Query 002166
Match_columns 957
No_of_seqs 380 out of 843
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 18:00:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 4.2E-61 9.1E-66 553.2 14.3 537 36-775 5-548 (635)
2 TIGR02250 FCP1_euk FCP1-like p 99.9 8.2E-27 1.8E-31 230.8 11.0 102 255-369 52-156 (156)
3 KOG3732 Staufen and related do 99.9 2.7E-23 5.9E-28 224.9 18.0 175 705-911 38-214 (339)
4 TIGR02251 HIF-SF_euk Dullard-l 99.8 3E-18 6.5E-23 170.1 11.9 117 256-395 37-159 (162)
5 PF03031 NIF: NLI interacting 99.8 2.9E-18 6.3E-23 166.8 10.1 118 255-394 30-153 (159)
6 PHA02701 ORF020 dsRNA-binding 99.6 9.6E-15 2.1E-19 148.5 10.6 70 703-772 106-177 (183)
7 smart00577 CPDc catalytic doma 99.5 2.8E-14 6.1E-19 139.1 11.3 102 254-370 38-145 (148)
8 PHA03103 double-strand RNA-bin 99.5 6.1E-14 1.3E-18 143.1 10.4 68 704-772 108-177 (183)
9 COG5190 FCP1 TFIIF-interacting 99.5 2.9E-14 6.2E-19 159.4 5.2 89 252-352 67-158 (390)
10 smart00358 DSRM Double-strande 99.5 3E-13 6.4E-18 113.1 9.4 64 707-770 1-66 (67)
11 cd00048 DSRM Double-stranded R 99.4 4.5E-13 9.8E-18 111.6 9.4 65 706-770 1-68 (68)
12 PF00035 dsrm: Double-stranded 99.4 7.2E-13 1.6E-17 111.5 10.4 64 707-770 1-67 (67)
13 PF00035 dsrm: Double-stranded 99.4 4.2E-13 9.2E-18 112.9 8.0 66 839-906 1-67 (67)
14 cd00048 DSRM Double-stranded R 99.4 5.2E-13 1.1E-17 111.2 7.9 67 838-906 1-68 (68)
15 smart00358 DSRM Double-strande 99.4 6.3E-13 1.4E-17 111.2 7.9 67 839-907 1-67 (67)
16 PHA03103 double-strand RNA-bin 99.4 7.7E-13 1.7E-17 135.2 9.1 73 835-910 107-179 (183)
17 PHA02701 ORF020 dsRNA-binding 99.4 2.9E-12 6.3E-17 130.6 13.2 74 835-910 106-179 (183)
18 KOG2777 tRNA-specific adenosin 99.4 8.9E-13 1.9E-17 151.7 10.3 164 722-942 10-180 (542)
19 PRK12371 ribonuclease III; Rev 99.4 1.1E-12 2.4E-17 138.4 10.0 68 705-772 161-231 (235)
20 KOG1605 TFIIF-interacting CTD 99.3 3.1E-13 6.8E-18 144.8 1.3 119 256-393 126-246 (262)
21 COG0571 Rnc dsRNA-specific rib 99.3 4.8E-12 1E-16 134.0 9.5 69 705-773 161-232 (235)
22 PRK14718 ribonuclease III; Pro 99.3 1.4E-11 2.9E-16 139.4 10.0 67 705-771 151-221 (467)
23 PRK12372 ribonuclease III; Rev 99.2 2.9E-11 6.4E-16 135.9 10.0 67 706-772 152-222 (413)
24 PRK00102 rnc ribonuclease III; 99.1 1.5E-10 3.2E-15 120.0 10.0 70 703-772 156-228 (229)
25 TIGR02245 HAD_IIID1 HAD-superf 99.1 1.7E-10 3.7E-15 119.3 10.2 127 259-394 43-179 (195)
26 PRK12371 ribonuclease III; Rev 99.1 1.3E-10 2.9E-15 122.8 8.1 72 836-908 160-231 (235)
27 TIGR02191 RNaseIII ribonucleas 99.1 3.1E-10 6.8E-15 116.5 9.3 68 703-770 150-220 (220)
28 COG0571 Rnc dsRNA-specific rib 99.1 2.4E-10 5.2E-15 121.2 8.5 72 836-908 160-231 (235)
29 PRK00102 rnc ribonuclease III; 99.0 4.7E-10 1E-14 116.2 8.6 73 835-908 156-228 (229)
30 TIGR02191 RNaseIII ribonucleas 99.0 1.1E-09 2.3E-14 112.7 8.5 71 835-906 150-220 (220)
31 PRK12372 ribonuclease III; Rev 99.0 1.3E-09 2.8E-14 122.9 9.0 86 836-922 150-238 (413)
32 PRK14718 ribonuclease III; Pro 99.0 1.3E-09 2.8E-14 123.8 8.2 86 836-922 150-238 (467)
33 KOG3732 Staufen and related do 98.9 3.1E-09 6.7E-14 116.7 7.4 71 837-910 38-108 (339)
34 PF14709 DND1_DSRM: double str 98.8 4.7E-09 1E-13 94.7 6.4 69 837-906 1-79 (80)
35 KOG4334 Uncharacterized conser 98.7 4E-08 8.7E-13 111.5 10.3 185 700-907 370-557 (650)
36 PF14709 DND1_DSRM: double str 98.4 7.2E-07 1.6E-11 80.6 6.9 65 706-770 2-79 (80)
37 KOG3792 Transcription factor N 98.0 4E-06 8.6E-11 99.1 3.4 189 721-928 385-592 (816)
38 KOG1817 Ribonuclease [RNA proc 97.9 3.7E-05 8.1E-10 87.3 8.5 68 707-774 429-505 (533)
39 TIGR01489 DKMTPPase-SF 2,3-dik 97.8 0.00016 3.5E-09 71.1 11.3 39 260-301 71-109 (188)
40 TIGR02253 CTE7 HAD superfamily 97.8 2E-05 4.3E-10 80.1 3.8 81 259-349 92-177 (221)
41 PF13419 HAD_2: Haloacid dehal 97.7 4.6E-05 9.9E-10 72.5 5.2 81 259-349 75-160 (176)
42 PLN02770 haloacid dehalogenase 97.7 0.00026 5.6E-09 74.8 10.5 80 260-349 107-191 (248)
43 TIGR01685 MDP-1 magnesium-depe 97.6 0.00014 3.1E-09 74.5 8.0 101 259-362 43-153 (174)
44 KOG2832 TFIIF-interacting CTD 97.6 0.00015 3.3E-09 81.4 8.5 118 254-394 207-329 (393)
45 KOG2777 tRNA-specific adenosin 97.6 9.7E-05 2.1E-09 86.6 7.3 65 704-773 89-155 (542)
46 TIGR01449 PGP_bact 2-phosphogl 97.5 0.00054 1.2E-08 69.2 10.4 82 259-350 83-169 (213)
47 PRK13288 pyrophosphatase PpaX; 97.5 0.00078 1.7E-08 68.8 10.9 81 259-349 80-165 (214)
48 TIGR03351 PhnX-like phosphonat 97.5 0.00025 5.5E-09 72.3 7.2 81 260-349 86-173 (220)
49 TIGR01454 AHBA_synth_RP 3-amin 97.5 0.00057 1.2E-08 69.3 9.5 81 259-349 73-158 (205)
50 TIGR01993 Pyr-5-nucltdase pyri 97.4 0.00079 1.7E-08 67.2 10.0 78 259-349 82-168 (184)
51 TIGR01548 HAD-SF-IA-hyp1 haloa 97.4 0.001 2.2E-08 67.3 10.7 79 261-349 106-188 (197)
52 TIGR01509 HAD-SF-IA-v3 haloaci 97.4 0.00099 2.1E-08 65.1 10.1 79 260-349 84-167 (183)
53 PLN03243 haloacid dehalogenase 97.4 0.00089 1.9E-08 72.1 10.5 80 260-349 108-192 (260)
54 PLN02575 haloacid dehalogenase 97.4 0.001 2.2E-08 75.9 11.2 81 260-350 215-300 (381)
55 PRK13223 phosphoglycolate phos 97.3 0.0005 1.1E-08 74.0 7.8 81 259-349 99-184 (272)
56 TIGR01488 HAD-SF-IB Haloacid D 97.3 0.0014 3E-08 64.3 10.1 46 260-309 72-117 (177)
57 TIGR01549 HAD-SF-IA-v1 haloaci 97.3 0.00097 2.1E-08 64.3 8.8 75 262-348 65-143 (154)
58 PRK13225 phosphoglycolate phos 97.3 0.00097 2.1E-08 72.3 9.6 80 260-349 141-222 (273)
59 COG5190 FCP1 TFIIF-interacting 97.3 0.00041 8.9E-09 79.1 6.5 100 255-366 246-347 (390)
60 TIGR00338 serB phosphoserine p 97.3 0.0011 2.5E-08 67.5 9.0 46 260-309 84-129 (219)
61 TIGR01428 HAD_type_II 2-haloal 97.2 0.00051 1.1E-08 69.2 6.2 80 260-349 91-175 (198)
62 PRK10826 2-deoxyglucose-6-phos 97.2 0.0019 4.2E-08 66.4 10.4 85 260-354 91-180 (222)
63 cd01427 HAD_like Haloacid deha 97.2 0.00064 1.4E-08 61.5 5.8 41 259-302 22-62 (139)
64 PLN02954 phosphoserine phospha 97.2 0.002 4.3E-08 66.0 10.1 47 260-309 83-130 (224)
65 TIGR01491 HAD-SF-IB-PSPlk HAD- 97.2 0.0031 6.6E-08 62.9 11.0 81 260-349 79-173 (201)
66 PRK13222 phosphoglycolate phos 97.2 0.0025 5.5E-08 64.8 10.5 81 259-349 91-176 (226)
67 PRK11587 putative phosphatase; 97.2 0.0013 2.8E-08 67.8 8.2 80 259-349 81-165 (218)
68 PRK13226 phosphoglycolate phos 97.2 0.0019 4.1E-08 67.4 9.5 81 259-349 93-178 (229)
69 PLN02940 riboflavin kinase 97.1 0.00034 7.4E-09 79.1 4.2 80 260-349 92-177 (382)
70 TIGR02252 DREG-2 REG-2-like, H 97.1 0.0016 3.6E-08 65.6 8.2 79 260-349 104-187 (203)
71 TIGR01422 phosphonatase phosph 97.1 0.0033 7E-08 66.1 10.5 87 260-355 98-191 (253)
72 COG0546 Gph Predicted phosphat 97.0 0.0062 1.3E-07 63.4 12.1 87 259-355 87-179 (220)
73 KOG3769 Ribonuclease III domai 97.0 0.00046 9.9E-09 75.9 3.5 70 703-772 230-303 (333)
74 TIGR01990 bPGM beta-phosphoglu 97.0 0.0037 8E-08 61.7 9.2 78 260-349 86-168 (185)
75 KOG3769 Ribonuclease III domai 96.9 0.0011 2.3E-08 73.1 5.5 75 835-910 230-305 (333)
76 PRK10725 fructose-1-P/6-phosph 96.9 0.00087 1.9E-08 66.6 3.9 77 261-349 88-169 (188)
77 KOG1817 Ribonuclease [RNA proc 96.8 0.0019 4.2E-08 74.0 6.6 71 837-908 427-503 (533)
78 COG1011 Predicted hydrolase (H 96.8 0.0015 3.2E-08 66.5 4.5 79 260-349 98-181 (229)
79 PRK06698 bifunctional 5'-methy 96.7 0.003 6.4E-08 72.8 7.3 79 259-349 328-410 (459)
80 PRK10563 6-phosphogluconate ph 96.7 0.00071 1.5E-08 69.3 2.0 92 259-363 86-183 (221)
81 KOG4334 Uncharacterized conser 96.7 0.0013 2.9E-08 75.9 4.1 70 835-907 373-442 (650)
82 PRK09552 mtnX 2-hydroxy-3-keto 96.6 0.0083 1.8E-07 62.1 8.6 39 260-301 73-111 (219)
83 TIGR01533 lipo_e_P4 5'-nucleot 96.6 0.011 2.3E-07 64.7 9.8 76 263-348 120-197 (266)
84 TIGR02247 HAD-1A3-hyp Epoxide 96.5 0.0043 9.2E-08 63.2 6.1 83 259-349 92-179 (211)
85 TIGR03333 salvage_mtnX 2-hydro 96.5 0.015 3.2E-07 60.2 9.8 47 260-309 69-115 (214)
86 PRK13582 thrH phosphoserine ph 96.3 0.024 5.1E-07 57.3 10.0 45 260-309 67-111 (205)
87 TIGR01672 AphA HAD superfamily 96.2 0.012 2.5E-07 63.4 7.2 72 264-349 117-194 (237)
88 PHA02597 30.2 hypothetical pro 96.1 0.0061 1.3E-07 61.5 4.6 83 259-350 72-156 (197)
89 TIGR01684 viral_ppase viral ph 96.0 0.013 2.8E-07 65.1 6.7 51 261-321 145-196 (301)
90 PRK09456 ?-D-glucose-1-phospha 95.9 0.026 5.5E-07 57.5 7.7 82 259-349 82-168 (199)
91 PRK11133 serB phosphoserine ph 95.7 0.044 9.6E-07 61.3 9.2 41 260-303 180-220 (322)
92 COG4996 Predicted phosphatase 95.7 0.024 5.2E-07 56.9 6.2 94 259-364 39-143 (164)
93 TIGR02137 HSK-PSP phosphoserin 95.5 0.044 9.6E-07 57.2 7.9 44 261-309 68-111 (203)
94 PRK08238 hypothetical protein; 95.4 0.071 1.5E-06 62.8 9.9 78 261-356 72-159 (479)
95 COG0560 SerB Phosphoserine pho 95.4 0.064 1.4E-06 56.6 8.6 86 260-348 76-169 (212)
96 PRK10748 flavin mononucleotide 95.2 0.023 4.9E-07 59.9 4.6 80 260-355 112-198 (238)
97 PLN02919 haloacid dehalogenase 95.1 0.077 1.7E-06 67.8 9.6 79 262-349 162-245 (1057)
98 KOG0921 Dosage compensation co 95.0 0.048 1E-06 67.5 7.2 198 707-908 3-240 (1282)
99 COG0637 Predicted phosphatase/ 94.9 0.027 5.9E-07 59.2 4.3 76 260-349 85-169 (221)
100 TIGR01686 FkbH FkbH-like domai 94.7 0.051 1.1E-06 60.1 6.1 81 263-349 33-113 (320)
101 KOG3109 Haloacid dehalogenase- 94.6 0.044 9.5E-07 58.9 4.8 79 262-350 99-189 (244)
102 TIGR01490 HAD-SF-IB-hyp1 HAD-s 94.4 0.018 3.8E-07 58.1 1.5 46 260-309 86-131 (202)
103 PF06888 Put_Phosphatase: Puta 94.4 0.23 4.9E-06 53.7 9.8 39 261-300 71-109 (234)
104 TIGR01664 DNA-3'-Pase DNA 3'-p 94.3 0.14 2.9E-06 52.0 7.6 81 260-349 41-137 (166)
105 TIGR01681 HAD-SF-IIIC HAD-supe 94.3 0.038 8.2E-07 53.4 3.3 86 261-349 29-118 (128)
106 TIGR02254 YjjG/YfnB HAD superf 94.1 0.076 1.6E-06 53.9 5.3 79 260-349 96-180 (224)
107 PRK11009 aphA acid phosphatase 93.9 0.19 4E-06 54.4 7.9 40 259-301 112-155 (237)
108 PRK14988 GMP/IMP nucleotidase; 93.7 0.09 2E-06 55.2 5.0 80 260-349 92-176 (224)
109 PRK11590 hypothetical protein; 93.3 0.15 3.3E-06 52.9 5.9 40 260-302 94-134 (211)
110 PRK09449 dUMP phosphatase; Pro 92.1 0.24 5.3E-06 50.8 5.5 84 260-354 94-185 (224)
111 PF03368 Dicer_dimer: Dicer di 90.5 0.33 7.2E-06 45.0 4.1 68 840-910 2-75 (90)
112 TIGR02009 PGMB-YQAB-SF beta-ph 90.0 0.37 8.1E-06 47.6 4.3 78 260-349 87-169 (185)
113 TIGR01691 enolase-ppase 2,3-di 89.1 0.6 1.3E-05 49.8 5.3 85 259-349 93-179 (220)
114 PRK13478 phosphonoacetaldehyde 88.9 0.75 1.6E-05 49.2 5.9 81 260-349 100-186 (267)
115 PF12689 Acid_PPase: Acid Phos 88.9 1.5 3.1E-05 45.5 7.7 88 258-349 42-134 (169)
116 PF12710 HAD: haloacid dehalog 87.5 1.2 2.6E-05 44.1 5.9 38 264-304 92-129 (192)
117 KOG0323 TFIIF-interacting CTD 87.0 0.94 2E-05 55.3 5.8 45 377-435 394-438 (635)
118 PLN02779 haloacid dehalogenase 86.5 0.97 2.1E-05 49.5 5.1 96 260-363 143-243 (286)
119 PF05152 DUF705: Protein of un 86.3 1.2 2.6E-05 49.8 5.6 102 264-401 145-249 (297)
120 TIGR01261 hisB_Nterm histidino 86.3 1.3 2.9E-05 44.8 5.6 80 259-349 27-130 (161)
121 PHA03398 viral phosphatase sup 85.3 1.8 3.8E-05 48.8 6.4 110 259-401 145-255 (303)
122 PF14954 LIX1: Limb expression 85.3 1.3 2.9E-05 47.7 5.1 80 835-918 19-104 (252)
123 PF03368 Dicer_dimer: Dicer di 84.7 4.3 9.3E-05 37.8 7.7 62 708-773 2-74 (90)
124 TIGR00099 Cof-subfamily Cof su 82.0 2.8 6E-05 44.3 6.0 30 145-175 2-31 (256)
125 TIGR01493 HAD-SF-IA-v2 Haloaci 81.7 0.56 1.2E-05 46.3 0.7 73 260-349 89-166 (175)
126 KOG3120 Predicted haloacid deh 80.4 4.2 9E-05 44.5 6.6 35 264-300 87-121 (256)
127 PLN02811 hydrolase 80.3 2.5 5.5E-05 43.9 4.9 79 260-349 77-167 (220)
128 TIGR01656 Histidinol-ppas hist 80.1 3.1 6.7E-05 40.9 5.2 39 261-302 27-80 (147)
129 PHA02530 pseT polynucleotide k 79.4 2 4.3E-05 46.5 4.0 81 259-351 185-281 (300)
130 TIGR01482 SPP-subfamily Sucros 78.7 1.7 3.8E-05 44.5 3.1 28 145-174 1-29 (225)
131 KOG1615 Phosphoserine phosphat 78.1 17 0.00037 39.3 10.1 41 261-304 88-128 (227)
132 PF08282 Hydrolase_3: haloacid 77.9 1.8 3.8E-05 43.9 2.8 29 145-174 1-29 (254)
133 smart00559 Ku78 Ku70 and Ku80 77.1 11 0.00024 37.5 8.1 86 35-127 33-124 (140)
134 PF03767 Acid_phosphat_B: HAD 74.0 2.5 5.3E-05 45.4 2.8 26 264-292 118-143 (229)
135 TIGR01485 SPP_plant-cyano sucr 72.4 1.8 3.9E-05 45.9 1.4 14 142-155 1-14 (249)
136 PTZ00174 phosphomannomutase; P 71.9 5.4 0.00012 42.6 4.8 31 142-174 5-36 (247)
137 TIGR01675 plant-AP plant acid 69.4 2.6 5.7E-05 45.7 1.8 95 264-369 123-227 (229)
138 PRK03669 mannosyl-3-phosphogly 69.1 3.6 7.9E-05 44.2 2.8 32 142-174 7-38 (271)
139 TIGR01668 YqeG_hyp_ppase HAD s 69.0 6.8 0.00015 39.7 4.5 81 261-355 43-126 (170)
140 PRK01158 phosphoglycolate phos 67.5 4.4 9.5E-05 41.8 2.9 29 144-174 5-34 (230)
141 TIGR02461 osmo_MPG_phos mannos 66.7 4.3 9.4E-05 43.0 2.7 28 145-174 2-29 (225)
142 TIGR01459 HAD-SF-IIA-hyp4 HAD- 65.8 8.5 0.00018 40.8 4.7 80 260-348 23-104 (242)
143 TIGR01493 HAD-SF-IA-v2 Haloaci 64.8 4 8.7E-05 40.3 1.9 14 144-157 1-14 (175)
144 PRK12702 mannosyl-3-phosphogly 64.7 6.4 0.00014 44.5 3.6 66 144-216 3-70 (302)
145 TIGR01544 HAD-SF-IE haloacid d 64.6 9.3 0.0002 42.7 4.8 38 260-300 120-157 (277)
146 TIGR01663 PNK-3'Pase polynucle 64.3 11 0.00024 45.6 5.7 38 262-302 198-247 (526)
147 PRK08942 D,D-heptose 1,7-bisph 63.8 19 0.0004 36.5 6.5 29 260-291 28-56 (181)
148 PRK10513 sugar phosphate phosp 63.8 5.8 0.00013 42.1 3.0 29 144-174 5-34 (270)
149 TIGR00213 GmhB_yaeD D,D-heptos 63.7 20 0.00043 36.2 6.7 29 260-291 25-53 (176)
150 TIGR02244 HAD-IG-Ncltidse HAD 62.7 9.9 0.00021 43.6 4.8 60 258-320 181-241 (343)
151 PF11019 DUF2608: Protein of u 62.7 39 0.00084 37.1 9.1 25 326-350 165-189 (252)
152 TIGR01689 EcbF-BcbF capsule bi 61.9 6.7 0.00015 38.9 2.9 13 144-156 3-15 (126)
153 TIGR01681 HAD-SF-IIIC HAD-supe 61.5 6.8 0.00015 38.0 2.8 14 144-157 2-15 (128)
154 PRK05446 imidazole glycerol-ph 61.3 13 0.00029 42.7 5.5 80 259-349 28-131 (354)
155 PRK09449 dUMP phosphatase; Pro 59.2 5.4 0.00012 41.1 1.7 12 144-155 5-16 (224)
156 PF00702 Hydrolase: haloacid d 58.8 19 0.00042 36.0 5.6 80 258-349 124-205 (215)
157 KOG3792 Transcription factor N 58.8 7.4 0.00016 48.1 3.0 62 704-770 505-569 (816)
158 PRK10530 pyridoxal phosphate ( 58.2 7.6 0.00017 41.0 2.7 30 144-174 5-34 (272)
159 TIGR01680 Veg_Stor_Prot vegeta 58.2 7.6 0.00016 43.4 2.8 15 140-154 99-113 (275)
160 PRK06769 hypothetical protein; 58.1 18 0.00038 36.9 5.2 29 260-291 27-55 (173)
161 TIGR01662 HAD-SF-IIIA HAD-supe 57.6 16 0.00035 34.7 4.5 83 260-355 24-121 (132)
162 PRK10976 putative hydrolase; P 56.8 8.6 0.00019 40.8 2.8 30 144-174 4-33 (266)
163 PRK15126 thiamin pyrimidine py 56.5 8.7 0.00019 41.1 2.8 30 144-174 4-33 (272)
164 TIGR01487 SPP-like sucrose-pho 55.2 9.9 0.00021 39.2 2.9 28 144-173 3-31 (215)
165 KOG2334 tRNA-dihydrouridine sy 54.6 4 8.6E-05 47.9 -0.1 66 705-772 375-442 (477)
166 TIGR02463 MPGP_rel mannosyl-3- 54.5 9.6 0.00021 39.3 2.7 28 145-173 2-29 (221)
167 TIGR02009 PGMB-YQAB-SF beta-ph 53.1 6.1 0.00013 39.1 1.0 14 144-157 3-16 (185)
168 TIGR02254 YjjG/YfnB HAD superf 52.4 6.3 0.00014 40.1 0.9 16 144-159 3-18 (224)
169 cd00594 KU Ku-core domain; inc 51.5 56 0.0012 35.3 8.0 87 35-128 86-176 (272)
170 PHA03398 viral phosphatase sup 50.6 12 0.00025 42.5 2.7 14 144-157 130-143 (303)
171 PF14954 LIX1: Limb expression 50.6 31 0.00067 37.7 5.7 63 705-769 21-94 (252)
172 PRK14988 GMP/IMP nucleotidase; 50.6 7.3 0.00016 41.1 1.1 12 144-155 12-23 (224)
173 PLN02423 phosphomannomutase 49.8 17 0.00036 39.2 3.7 30 142-173 7-37 (245)
174 PRK13478 phosphonoacetaldehyde 48.8 7.5 0.00016 41.7 0.9 14 144-157 6-19 (267)
175 COG0561 Cof Predicted hydrolas 48.3 14 0.00031 39.2 2.9 28 142-170 3-30 (264)
176 TIGR01662 HAD-SF-IIIA HAD-supe 47.6 16 0.00034 34.8 2.8 12 144-155 2-13 (132)
177 PF02169 LPP20: LPP20 lipoprot 47.4 22 0.00047 32.0 3.5 30 879-908 11-40 (92)
178 TIGR01456 CECR5 HAD-superfamil 46.8 14 0.00029 41.4 2.5 28 143-172 1-28 (321)
179 TIGR01486 HAD-SF-IIB-MPGP mann 44.8 15 0.00033 39.0 2.4 28 145-173 2-29 (256)
180 PF02169 LPP20: LPP20 lipoprot 44.6 30 0.00064 31.2 3.9 29 744-772 12-40 (92)
181 PLN02151 trehalose-phosphatase 44.4 22 0.00047 41.2 3.6 26 129-154 85-110 (354)
182 PLN02887 hydrolase family prot 43.4 21 0.00044 43.8 3.5 38 136-175 302-340 (580)
183 TIGR01484 HAD-SF-IIB HAD-super 43.0 18 0.00039 36.8 2.5 13 145-157 2-14 (204)
184 PLN03017 trehalose-phosphatase 42.2 16 0.00034 42.5 2.2 26 129-154 98-123 (366)
185 PLN02779 haloacid dehalogenase 41.3 11 0.00025 41.3 0.9 14 144-157 42-55 (286)
186 PRK00192 mannosyl-3-phosphogly 40.4 21 0.00045 38.6 2.6 30 143-173 5-34 (273)
187 COG2503 Predicted secreted aci 39.7 14 0.0003 41.1 1.1 17 139-155 76-92 (274)
188 COG2179 Predicted hydrolase of 39.7 17 0.00036 38.4 1.7 21 136-156 22-42 (175)
189 TIGR02471 sucr_syn_bact_C sucr 39.4 19 0.00041 37.8 2.1 23 145-169 2-24 (236)
190 PRK10187 trehalose-6-phosphate 38.6 24 0.00053 38.5 2.8 15 142-156 14-28 (266)
191 TIGR00578 ku70 ATP-dependent D 38.1 1E+02 0.0022 37.9 8.2 87 35-128 316-415 (584)
192 TIGR01656 Histidinol-ppas hist 37.4 27 0.00058 34.4 2.7 15 144-158 2-16 (147)
193 PF05116 S6PP: Sucrose-6F-phos 36.9 21 0.00046 38.5 2.0 13 142-154 2-14 (247)
194 PF02735 Ku: Ku70/Ku80 beta-ba 36.4 1.2E+02 0.0026 31.6 7.3 87 35-127 80-172 (200)
195 TIGR01457 HAD-SF-IIA-hyp2 HAD- 36.4 20 0.00044 38.5 1.8 29 144-174 3-31 (249)
196 TIGR01545 YfhB_g-proteo haloac 35.9 16 0.00034 38.6 0.8 38 260-300 93-131 (210)
197 KOG1033 eIF-2alpha kinase PEK/ 35.3 47 0.001 40.3 4.6 126 731-903 11-136 (516)
198 cd01773 Faf1_like1_UBX Faf1 ik 35.2 1.5E+02 0.0032 27.9 6.9 77 230-348 3-81 (82)
199 cd00789 KU_like Ku-core domain 34.6 1.3E+02 0.0029 33.3 7.6 78 35-127 84-163 (256)
200 smart00775 LNS2 LNS2 domain. T 34.3 31 0.00066 35.0 2.6 22 144-165 1-22 (157)
201 KOG0921 Dosage compensation co 33.4 15 0.00034 46.8 0.3 74 697-770 159-238 (1282)
202 PF09921 DUF2153: Uncharacteri 33.3 66 0.0014 32.5 4.5 40 162-206 42-85 (126)
203 TIGR00685 T6PP trehalose-phosp 32.1 44 0.00095 35.7 3.5 15 141-155 2-16 (244)
204 TIGR01458 HAD-SF-IIA-hyp3 HAD- 31.2 27 0.00058 37.8 1.7 34 264-300 123-156 (257)
205 PF00333 Ribosomal_S5: Ribosom 30.3 41 0.0009 30.2 2.4 39 732-770 20-62 (67)
206 cd00873 KU80 Ku-core domain, K 29.8 1.7E+02 0.0037 32.7 7.7 84 37-127 96-183 (300)
207 PRK10444 UMP phosphatase; Prov 29.7 31 0.00068 37.4 1.9 28 144-173 3-30 (248)
208 PLN02382 probable sucrose-phos 29.3 36 0.00078 39.8 2.4 17 140-156 7-23 (413)
209 cd00788 KU70 Ku-core domain, K 28.0 2.1E+02 0.0045 31.8 7.8 86 35-127 92-190 (287)
210 PF02839 CBM_5_12: Carbohydrat 27.6 32 0.00069 27.2 1.1 21 201-221 9-29 (41)
211 PF13344 Hydrolase_6: Haloacid 27.5 58 0.0013 30.7 3.1 46 145-192 1-54 (101)
212 PF08645 PNK3P: Polynucleotide 27.4 30 0.00064 35.2 1.1 16 145-160 3-18 (159)
213 TIGR01452 PGP_euk phosphoglyco 27.0 37 0.0008 37.0 1.8 28 144-173 4-31 (279)
214 PF09003 Phage_integ_N: Bacter 26.8 51 0.0011 30.6 2.4 33 872-906 29-61 (75)
215 PRK14502 bifunctional mannosyl 26.5 51 0.0011 41.3 3.1 33 141-174 415-447 (694)
216 TIGR01021 rpsE_bact ribosomal 24.8 80 0.0017 32.7 3.7 41 732-772 20-64 (154)
217 TIGR02772 Ku_bact Ku protein, 24.3 2.7E+02 0.0059 31.0 7.9 70 35-113 85-155 (258)
218 PF09419 PGP_phosphatase: Mito 24.2 58 0.0012 34.1 2.5 21 139-159 38-58 (168)
219 TIGR01525 ATPase-IB_hvy heavy 24.0 82 0.0018 38.0 4.1 43 258-303 381-424 (556)
220 TIGR01670 YrbI-phosphatas 3-de 23.0 37 0.00081 33.9 0.9 73 261-349 30-102 (154)
221 TIGR01545 YfhB_g-proteo haloac 22.6 96 0.0021 32.8 3.9 18 144-161 7-24 (210)
222 PF10195 Phospho_p8: DNA-bindi 22.5 37 0.0008 30.3 0.6 15 748-762 23-37 (60)
223 CHL00138 rps5 ribosomal protei 22.0 1E+02 0.0023 31.6 3.8 41 732-772 42-86 (143)
224 PF00702 Hydrolase: haloacid d 21.7 46 0.001 33.3 1.3 14 144-157 3-16 (215)
225 PRK09484 3-deoxy-D-manno-octul 21.0 43 0.00094 34.4 0.9 11 144-154 23-33 (183)
226 KOG1924 RhoA GTPase effector D 21.0 2.7E+02 0.0058 35.9 7.5 14 394-407 421-434 (1102)
227 COG4172 ABC-type uncharacteriz 20.7 2.3E+02 0.0049 34.3 6.6 38 182-219 196-241 (534)
228 KOG2334 tRNA-dihydrouridine sy 20.7 38 0.00082 40.3 0.5 66 836-906 374-440 (477)
229 COG3882 FkbH Predicted enzyme 20.7 48 0.001 40.2 1.3 23 135-157 215-237 (574)
230 cd00036 ChtBD3 Chitin/cellulos 20.3 58 0.0013 25.7 1.3 19 201-219 7-25 (41)
231 PRK00550 rpsE 30S ribosomal pr 20.2 1.1E+02 0.0023 32.2 3.6 41 732-772 31-75 (168)
232 TIGR01670 YrbI-phosphatas 3-de 20.1 1.6E+02 0.0035 29.4 4.7 11 144-154 3-13 (154)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=4.2e-61 Score=553.17 Aligned_cols=537 Identities=27% Similarity=0.346 Sum_probs=433.3
Q ss_pred cccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCCCc--cHHHHHHHHHhhhcccceEeecCCCceeEEEEeeecC
Q 002166 36 VFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSD--NIQLHLLHSSCIRENKTAVMPLGLTEELHLVAMYSRN 113 (957)
Q Consensus 36 ~~~~~~i~~~~~~~e~~~pl~~lh~i~~~~~~~~~~~~~~~--~~~l~~lh~~c~~e~ktav~~~~~~~elhlva~~~~~ 113 (957)
+..++++.+||...|+|++++++.+++.+++|++.+++-.. +..+...|+.|..+.++|||..+ .++.|+|||.+..
T Consensus 5 ~~~~~~~~~~~~~~e~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~e~~~v~~~-~~~~~~v~~~~~~ 83 (635)
T KOG0323|consen 5 PGPEERREAFSIVIERSPDLAELTALASGASDGVLESSDDSLVEKDLESFVAICRSKVEGAVVLLG-RDLEKKVALISGV 83 (635)
T ss_pred CCCcchhhhhhhhhccCcchhhhhhhhhhccccccccccccchhhcccchhheecccccchhhccc-cchhhhhcccccc
Confidence 34459999999999999999999999999999999988554 77789999999999999999999 8899999999998
Q ss_pred CCCCccEEEEEeeccchhhhHHHHhhcceeeEEEeCccchhhhccccchHHHHHHHHhhhccCCChhhhhhhHHHHHHhh
Q 002166 114 NEKQYPCFWAFSVGSGLYNSCLTMLNLRCLGIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRIAGMQAEVKRYQ 193 (957)
Q Consensus 114 ~~~~~p~F~~~~~~~~~y~~~~~ml~~r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~~~~dp~~~~~~~~e~kr~~ 193 (957)
-.. ++|||+|.|..|+|+.|+.+|+.+|...++||++|++.+++|.+|.++|.+...||.+.. +++++
T Consensus 84 ~~~-~~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------L~lv~ 151 (635)
T KOG0323|consen 84 SSS-TSCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKK-----------LHLVL 151 (635)
T ss_pred ccc-cCCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhc-----------ceeeh
Confidence 644 799999999999999999999999999999999999999999999999999999997664 78889
Q ss_pred hhHHHHHHHhhcCccccCCeEEEeecccccCCCccccccccceEeccccceeeeecCCCCCCceEEEeeCcChHHHHHHH
Q 002166 194 DDKNILKQYAENDQVNENGKVIKVQSEVVPALSDSHQALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYL 273 (957)
Q Consensus 194 ~D~~lL~q~~~~d~v~~~G~~~~~q~E~~~~~~d~~~~~~rpvirl~~~n~~ltrI~P~~r~~~~~vKLRPgv~eLr~FL 273 (957)
++...|.+|+..+.+..+++-.+.+.+.+ ..|..+++|+|..+.++|||||||||++ ||
T Consensus 152 Dld~tllh~~~~~~l~e~~~~l~~~~~~~------------------~sn~dl~~~~~~~~~~~~~vKlRP~~~e---fL 210 (635)
T KOG0323|consen 152 DLDHTLLHTILKSDLSETEKYLKEEAESV------------------ESNKDLFRFNPLGHDTEYLVKLRPFVHE---FL 210 (635)
T ss_pred hhhhHHHHhhccchhhhhhhhcccccccc------------------cccccceeecccCCCceEEEEeCccHHH---HH
Confidence 99999999999999999998888777664 3478899999999999999999999999 99
Q ss_pred hhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC---CccchhhhccCCCCCCcEEEEEcCCcc
Q 002166 274 TARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNVFQDGTCHPKMALVIDDRLK 350 (957)
Q Consensus 274 ~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg---~~KsL~~lfp~g~~~~~mvVIIDDR~d 350 (957)
+ +++++|||||||||+|.||++||+||||+|+||+ +|||||+++ ..++|..+|+ |+++||||||||.+
T Consensus 211 ~-~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~-----dRIisrde~~~~kt~dL~~~~p---~g~smvvIIDDr~d 281 (635)
T KOG0323|consen 211 K-EANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFG-----DRIISRDESPFFKTLDLVLLFP---CGDSMVVIIDDRSD 281 (635)
T ss_pred H-HHHhhceeEEEeccchHHHHHHHHHhCCCCcccc-----ceEEEecCCCcccccccccCCC---CCCccEEEEeCccc
Confidence 8 9999999999999999999999999999999999 999999765 4466666676 99999999999999
Q ss_pred cCCCCCCCCeEEeccccCccCchhhhcccCchHHHHHHHHhhhcccchhcchhhhhhccccccccCcCCCCCCCCCcccc
Q 002166 351 VWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNY 430 (957)
Q Consensus 351 VW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh~~FF~~~De~l~~ri~ev~~e~~~~~~~~~pDv~n~ 430 (957)
||+++++ |+++|.+|.||...-+-.+. +.+|.+++++|.++|.||+++|+.+..+|.++-|+++-.+.+..+++
T Consensus 282 VW~~~~~-nLI~i~~y~yF~~~gd~nap--~~~~~~~~~~~~~~~~~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~--- 355 (635)
T KOG0323|consen 282 VWPDHKR-NLIQIAPYPYFSGQGDINAP--PPLHVLRNVACSVRGAFFKEFDPSLKSRISEVRYEDDDESNPTSYSV--- 355 (635)
T ss_pred cccCCCc-ceEEeeeeecccCcccccCC--cccccccchhcccccccccccCcccccccccccccccccccCccccc---
Confidence 9999965 67789999766544322222 78999999999999999999999999999999999999999999998
Q ss_pred eeccccccccCCCCCCCCCCCCchHHHHHHHhhhhhhhccccccccccCCCCCCCcccccCCCCCCCcCCCccccccccc
Q 002166 431 LVSEDDAATANGIKDPLSFDGMADAEVERRLKEAIAASATISSAVANLDPRLAPFQYTMPSSSSTTTLPTSQAAVMPLAN 510 (957)
Q Consensus 431 l~~ed~~~~~~~n~~~~~~~gm~~~eve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~p~~~~~~~~~ 510 (957)
-+|+|.+++.+|||.+. +| .
T Consensus 356 --------~~~~~~~p~~~~~~~~~-------------------------------------~~---~------------ 375 (635)
T KOG0323|consen 356 --------ELSANPGPLKQDGMDEF-------------------------------------VP---E------------ 375 (635)
T ss_pred --------ccccccCcccccccccc-------------------------------------cc---c------------
Confidence 47888888889999876 00 0
Q ss_pred cCCCCCccccccccccCCCCCCcCCCcccccCCCCCCCCChhhhhhhhhhccCCCcCCCCCCCCCCCCCCCccccCCccC
Q 002166 511 MQFPPATSLVKPLGHVGPPEQSLQSSPAREEGEVPESELDPDTRRRLLILQHGMDTRENAPSEAPFPARTQMQVSVPRVP 590 (957)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~psl~~sP~reege~pe~eld~dtrrrllilqhgqd~r~~~~~~pp~~~r~p~q~s~~~v~ 590 (957)
.
T Consensus 376 ------------------------------------~------------------------------------------- 376 (635)
T KOG0323|consen 376 ------------------------------------E------------------------------------------- 376 (635)
T ss_pred ------------------------------------c-------------------------------------------
Confidence 0
Q ss_pred CCCCccccccccCccccCCCCCCCCCCCccccc-cccCCCCCCCCCCCCCCCCCCCC-ccccccCCchhcchhhhhhccc
Q 002166 591 SRGSWFPVEEEMSPRQLNRAVPKEFPLNSEAMQ-IEKHRPPHPSFFPKIENPSTSDR-PHENQRMPKEALRRDDRLRLNH 668 (957)
Q Consensus 591 ~~g~w~~veeem~~~~~nr~~~~~~~~~~~~~~-~~k~~~~~~s~~~~~~~~~~sd~-~~~~q~~p~~~~~~~~~~~~n~ 668 (957)
+.+++.+.+..+..+.+.+.++...+ ..+..+-|+.||.+.+ ...+. .+.+-|.......+.....-|-
T Consensus 377 -------~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~~~--~~~e~~~~~Dvr~~i~~~~~~v~~~~~~ 447 (635)
T KOG0323|consen 377 -------NAPEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAKYD--EVEETLESPDVRLLIPELRTKVLKGSQI 447 (635)
T ss_pred -------cchhhcccccccccccccccchhHHHHhhhhcccchhhhhccc--cccccccCCChhhhhhhhhhHHhhccce
Confidence 11111111111111222222333334 3445778999999865 22223 5555555555555555555566
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCCccccCCccCCCCCCchHHHHHHHHhcCCCeEEEEeeecCCCceEEEEEEECCEEEE
Q 002166 669 TLSDYQSFSGEEIPLSRSSSSSRDVDFESGRDVSSTETPSGVLQDIAMKCGTKVEFRPALVASTELQFSIEAWFAGEKIG 748 (957)
Q Consensus 669 ~~~~~~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~n~KS~LQE~~QK~~~~~~Y~~v~~~~Hdk~FtveV~I~G~~~G 748 (957)
..|+-+|+.....+ +......-+-+....+.+..-.++.++.+++....|.......-.-.|.+.+|--.+.||
T Consensus 448 vfSg~~P~~~~~~~------s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e~w~ 521 (635)
T KOG0323|consen 448 VFSGLHPTGSTDES------ADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAWLWRSLEKWG 521 (635)
T ss_pred eecccccCcCCcch------hhhhhhhhcccceecccccchhhhHHhhccCcceeeccccccceeEechhHHHHHHHHhc
Confidence 67777776655333 222223333335667888899999999999998888865444444577778888889999
Q ss_pred EeecCCHHHHHHHHHHHHHHHHHhhhh
Q 002166 749 EGIGRTRREAQRQAAEGSIKHLANVYM 775 (957)
Q Consensus 749 eG~GkSKKEAEq~AAk~AL~~L~~~~~ 775 (957)
.|.++.++.+...+|......+...+.
T Consensus 522 ~v~ek~~~l~~~~~~~~~~~~~a~~~~ 548 (635)
T KOG0323|consen 522 KVEEKLEPLDDDQRAAIRRESLARLYE 548 (635)
T ss_pred chhcccccccccccchhcccchhhhhh
Confidence 999999999999998888777765544
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=99.94 E-value=8.2e-27 Score=230.82 Aligned_cols=102 Identities=29% Similarity=0.548 Sum_probs=93.3
Q ss_pred CceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC---Cccchhhh
Q 002166 255 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSLFNV 331 (957)
Q Consensus 255 ~~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg---~~KsL~~l 331 (957)
++.+++++|||+.+ ||+ +++++||++|||+|.+.||.+|++.|||++.+|+ +||++++++ ..|+|+++
T Consensus 52 ~~~~~v~~rPgv~e---fL~-~l~~~yel~I~T~~~~~yA~~vl~~ldp~~~~F~-----~ri~~rd~~~~~~~KdL~~i 122 (156)
T TIGR02250 52 TMWYLTKLRPFLHE---FLK-EASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFG-----DRIISRDESGSPHTKSLLRL 122 (156)
T ss_pred CeEEEEEECCCHHH---HHH-HHHhhcEEEEEeCCcHHHHHHHHHHhCcCCCeec-----cEEEEeccCCCCccccHHHH
Confidence 56899999999999 888 8889999999999999999999999999999998 899999763 67999999
Q ss_pred ccCCCCCCcEEEEEcCCcccCCCCCCCCeEEeccccCc
Q 002166 332 FQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPY 369 (957)
Q Consensus 332 fp~g~~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf 369 (957)
|+ ++.+++|||||+++||..+. .|++.|++|.||
T Consensus 123 ~~---~d~~~vvivDd~~~~~~~~~-~N~i~i~~~~~f 156 (156)
T TIGR02250 123 FP---ADESMVVIIDDREDVWPWHK-RNLIQIEPYNYF 156 (156)
T ss_pred cC---CCcccEEEEeCCHHHhhcCc-cCEEEeCCcccC
Confidence 97 78999999999999999984 567789999887
No 3
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.90 E-value=2.7e-23 Score=224.89 Aligned_cols=175 Identities=19% Similarity=0.237 Sum_probs=137.4
Q ss_pred CCchHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhccccCCC
Q 002166 705 ETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDS 782 (957)
Q Consensus 705 ~n~KS~LQE~~QK~~~~~~Y~~v~~--~~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L~~~~~a~~~~~~ 782 (957)
+++++.||||+.+.+..+.|+++.+ +.|++.|+++|.|+ +..++|.|+|||.||+.||+.+|..|+..-..
T Consensus 38 KS~IS~l~E~~~r~~~~v~fevl~eeGp~H~~~fv~rvtvg-~~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l------ 110 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEVLREEGPPHMPNFVFRVTVG-EITATGEGKSKKLAKHRAAEALLKELKKLPPL------ 110 (339)
T ss_pred CChHHHHHHHHHHhCCCcceeeeeccCCccCCCeEEEEEEe-eeEEecCCCchhHHHHHHHHHHHHHHhcCCCc------
Confidence 8899999999999999999999875 67999999999987 77789999999999999999999999874321
Q ss_pred CCCCCCCCCCCCcccccccCcCCCCCCCCCCcCcCCCCCCCCcCCCcccCCCCCCChhHHHHHHhhhcCCceeeeecCCC
Q 002166 783 GSGHGDGSRFSNANENCFMGEINSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPS 862 (957)
Q Consensus 783 ~~~~~D~~~~p~~~eN~f~~~~ns~~~~~~s~~d~~sse~srl~~~~l~~s~~~~NpVglLNELcqkeGL~v~f~~~~~~ 862 (957)
.....|+..+.-++ .. +..... + ....-....|||+.|+||||..+|.+++|+. +.
T Consensus 111 ~~v~k~~~~~~~~~-----~~----~~~~~q--------~------~d~~~~~~~NPI~~L~e~~q~k~~k~P~yel-v~ 166 (339)
T KOG3732|consen 111 ANVRKDSLKFAKMK-----SS----GVKKDQ--------P------GDPEYGQVLNPIGRLQELAQAKKWKLPEYEL-VQ 166 (339)
T ss_pred cccccCcccccccc-----cC----CccccC--------C------CCcccccccChHHHHHHHHHHhCCCCCceEE-Ee
Confidence 11122222220000 00 000000 0 0000113569999999999999999999998 78
Q ss_pred CCCCCCCccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHHhhccC
Q 002166 863 SANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMFG 911 (957)
Q Consensus 863 ~sGp~h~keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL~s~~~ 911 (957)
+.|.+|.++|+|+|+|++.+- +|.|.|||.||++||++.|..|-....
T Consensus 167 E~G~~~~rEFv~q~sv~~~~~-~GkG~sKKiAKRnAAeamLe~l~~~~~ 214 (339)
T KOG3732|consen 167 ESGVPHRREFVIQCSVENFTE-EGKGPSKKIAKRNAAEAMLESLGFVKP 214 (339)
T ss_pred ccCCCccceEEEEEEecceee-ecCCchHHHHHHHHHHHHHHHhccCCC
Confidence 899999999999999999988 999999999999999999999986553
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.76 E-value=3e-18 Score=170.08 Aligned_cols=117 Identities=20% Similarity=0.177 Sum_probs=91.6
Q ss_pred ceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC------Cccchh
Q 002166 256 TSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG------SRKSLF 329 (957)
Q Consensus 256 ~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg------~~KsL~ 329 (957)
..|||++|||+.| ||+ .++++||++|||+|++.||..|++.|||.+.+|. .+++++++ ..|.|.
T Consensus 37 ~~~~v~~RPgl~e---FL~-~l~~~yei~I~Ts~~~~yA~~il~~ldp~~~~f~------~~l~r~~~~~~~~~~~K~L~ 106 (162)
T TIGR02251 37 IPVYVFKRPHVDE---FLE-RVSKWYELVIFTASLEEYADPVLDILDRGGKVIS------RRLYRESCVFTNGKYVKDLS 106 (162)
T ss_pred EEEEEEECCCHHH---HHH-HHHhcCEEEEEcCCcHHHHHHHHHHHCcCCCEEe------EEEEccccEEeCCCEEeEch
Confidence 5799999999999 887 7788899999999999999999999999998888 44455443 357888
Q ss_pred hhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEeccccCccCchhhhcccCchHHHHHHHHhhhcc
Q 002166 330 NVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRG 395 (957)
Q Consensus 330 ~lfp~g~~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh~ 395 (957)
.+- .+.+.+|||||+...|..+.+| .+.|.+|.. ...+-.|..++.+|..++.
T Consensus 107 ~l~----~~~~~vIiVDD~~~~~~~~~~N-gI~i~~f~~--------~~~D~~L~~l~~~L~~l~~ 159 (162)
T TIGR02251 107 LVG----KDLSKVIIIDNSPYSYSLQPDN-AIPIKSWFG--------DPNDTELLNLIPFLEGLRF 159 (162)
T ss_pred hcC----CChhhEEEEeCChhhhccCccC-EeecCCCCC--------CCCHHHHHHHHHHHHHHhc
Confidence 764 4678999999999999988544 556777752 1122247777788777643
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=99.75 E-value=2.9e-18 Score=166.76 Aligned_cols=118 Identities=22% Similarity=0.267 Sum_probs=84.0
Q ss_pred CceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC------Cccch
Q 002166 255 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG------SRKSL 328 (957)
Q Consensus 255 ~~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg------~~KsL 328 (957)
.+.+++++|||+++ ||+ .+++.|||+|||+|++.||..|++.|||.+.+|. ++++|++. ..|+|
T Consensus 30 ~~~~~v~~RP~l~~---FL~-~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~~~~------~~~~r~~~~~~~~~~~KdL 99 (159)
T PF03031_consen 30 RGGYYVKLRPGLDE---FLE-ELSKHYEVVIWTSASEEYAEPVLDALDPNGKLFS------RRLYRDDCTFDKGSYIKDL 99 (159)
T ss_dssp EEEEEEEE-TTHHH---HHH-HHHHHCEEEEE-SS-HHHHHHHHHHHTTTTSSEE------EEEEGGGSEEETTEEE--G
T ss_pred ccceeEeeCchHHH---HHH-HHHHhceEEEEEeehhhhhhHHHHhhhhhccccc------cccccccccccccccccch
Confidence 45789999999999 898 7899999999999999999999999999999997 55566543 25899
Q ss_pred hhhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEeccccCccCchhhhcccCchHHHHHHHHhhhc
Q 002166 329 FNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR 394 (957)
Q Consensus 329 ~~lfp~g~~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh 394 (957)
..+. .+.+.+|||||++.+|... +.|++.|++|.... ..+..|.....+|..+.
T Consensus 100 ~~l~----~~~~~vvivDD~~~~~~~~-~~N~i~v~~f~~~~-------~~D~~L~~l~~~L~~l~ 153 (159)
T PF03031_consen 100 SKLG----RDLDNVVIVDDSPRKWALQ-PDNGIPVPPFFGDT-------PNDRELLRLLPFLEELA 153 (159)
T ss_dssp GGSS----S-GGGEEEEES-GGGGTTS-GGGEEE----SSCH-------TT--HHHHHHHHHHHHH
T ss_pred HHHh----hccccEEEEeCCHHHeecc-CCceEEeccccCCC-------cchhHHHHHHHHHHHhC
Confidence 9884 3578999999999999887 56778899876543 12224566666666554
No 6
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.57 E-value=9.6e-15 Score=148.52 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=63.6
Q ss_pred CCCCchHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002166 703 STETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 772 (957)
Q Consensus 703 ~~~n~KS~LQE~~QK~~~~~~Y~~v~~--~~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L~~ 772 (957)
...+|||.||||+|+.+..+.|+++.+ ++|.+.|+++|+|+|+.+|.|.|+|||+|||+||+.||+.|..
T Consensus 106 k~~DpKS~LQE~~Q~~~~~l~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 106 KTLNPVSAVNEFCMRTHRPLEFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CCCCccHHHHHHHHhcCCCCeEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 445899999999999987669988765 6799999999999999999999999999999999999999854
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.54 E-value=2.8e-14 Score=139.14 Aligned_cols=102 Identities=22% Similarity=0.221 Sum_probs=80.8
Q ss_pred CCceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC------Cccc
Q 002166 254 RDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG------SRKS 327 (957)
Q Consensus 254 r~~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg------~~Ks 327 (957)
....+++++|||+.|++.+| ++.|++.|+|++.+.||+.+++.||+...+| ++|+++++. ..|.
T Consensus 38 ~~~~~~v~l~pG~~e~L~~L----~~~~~l~I~Ts~~~~~~~~il~~l~~~~~~f------~~i~~~~d~~~~KP~~~k~ 107 (148)
T smart00577 38 HPHGVYVKKRPGVDEFLKRA----SELFELVVFTAGLRMYADPVLDLLDPKKYFG------YRRLFRDECVFVKGKYVKD 107 (148)
T ss_pred ceEEEEEEECCCHHHHHHHH----HhccEEEEEeCCcHHHHHHHHHHhCcCCCEe------eeEEECccccccCCeEeec
Confidence 34579999999999954444 5679999999999999999999999976444 489998654 2245
Q ss_pred hhhhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEeccccCcc
Q 002166 328 LFNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYY 370 (957)
Q Consensus 328 L~~lfp~g~~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf~ 370 (957)
|+++ . ++++-+|+|||+...|.... .+.+.|++|+++.
T Consensus 108 l~~l-~---~~p~~~i~i~Ds~~~~~aa~-~ngI~i~~f~~~~ 145 (148)
T smart00577 108 LSLL-G---RDLSNVIIIDDSPDSWPFHP-ENLIPIKPWFGDP 145 (148)
T ss_pred HHHc-C---CChhcEEEEECCHHHhhcCc-cCEEEecCcCCCC
Confidence 6555 2 67899999999999999884 5566799997654
No 8
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.50 E-value=6.1e-14 Score=143.13 Aligned_cols=68 Identities=21% Similarity=0.281 Sum_probs=60.3
Q ss_pred CCCchHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002166 704 TETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 772 (957)
Q Consensus 704 ~~n~KS~LQE~~QK~~~~~~Y~~v~~--~~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L~~ 772 (957)
..+|||.||||||+++... |.++.+ ++|.+.|+++|+|+|+.+|+|.|+|||+|||+||+.||+.|..
T Consensus 108 ~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 108 DKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred cCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 4589999999999998776 444433 6799999999999999999999999999999999999999954
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.47 E-value=2.9e-14 Score=159.43 Aligned_cols=89 Identities=34% Similarity=0.555 Sum_probs=83.1
Q ss_pred CCCCceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC---Cccch
Q 002166 252 QIRDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---SRKSL 328 (957)
Q Consensus 252 ~~r~~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg---~~KsL 328 (957)
....|+|++|.||+... |+. +.+++||+|+||||+|.||.++++++||.|++|+ +|+++++.. ..|++
T Consensus 67 ~~~~~~~~~k~~~~l~~---~~~-~i~~~~e~~~~~~~~~~~~~~~~~i~d~~g~~~~-----d~~~~~~~~~~~~~~s~ 137 (390)
T COG5190 67 VQEKCAYYVKARPKLFP---FLT-KISPLYELHIYTMGTRAYAERIAKIIDPTGKLFN-----DRILSRDESGSLSQKSL 137 (390)
T ss_pred ccccccceeeecccccc---hhh-hhchhcceeeEeeccccchhhhhhcccccccccc-----cccccccccccchhhhh
Confidence 34578999999999988 998 9999999999999999999999999999999999 999999643 67999
Q ss_pred hhhccCCCCCCcEEEEEcCCcccC
Q 002166 329 FNVFQDGTCHPKMALVIDDRLKVW 352 (957)
Q Consensus 329 ~~lfp~g~~~~~mvVIIDDR~dVW 352 (957)
.++|| ++.+|++|+||+.+||
T Consensus 138 ~~l~p---~~~n~~vi~~d~~~~~ 158 (390)
T COG5190 138 SRLFP---KDQNMVVIIDDRGDVW 158 (390)
T ss_pred hhcCc---cccccccccccccccC
Confidence 99999 8999999999999999
No 10
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.46 E-value=3e-13 Score=113.12 Aligned_cols=64 Identities=31% Similarity=0.539 Sum_probs=59.3
Q ss_pred chHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002166 707 PSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 770 (957)
Q Consensus 707 ~KS~LQE~~QK~~~~~~Y~~v~~--~~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L 770 (957)
||+.|+||||+++..+.|+.... ++|.+.|++.|.|+|+.++.|.|+|||+||++||+.||+.|
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 68999999999998899998753 56889999999999999999999999999999999999877
No 11
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.44 E-value=4.5e-13 Score=111.58 Aligned_cols=65 Identities=29% Similarity=0.497 Sum_probs=58.5
Q ss_pred CchHHHHHHHHhc-CCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002166 706 TPSGVLQDIAMKC-GTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 770 (957)
Q Consensus 706 n~KS~LQE~~QK~-~~~~~Y~~v~~--~~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L 770 (957)
|||+.|+||||++ +..+.|+++.. ++|.+.|++.|.|+|+.++.|.|+|||+||+.||+.||+.|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 5899999999998 46789998644 46789999999999999999999999999999999999865
No 12
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.44 E-value=7.2e-13 Score=111.48 Aligned_cols=64 Identities=25% Similarity=0.393 Sum_probs=57.1
Q ss_pred chHHHHHHHHhcCCCeEEEEeee--cCCC-ceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002166 707 PSGVLQDIAMKCGTKVEFRPALV--ASTE-LQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 770 (957)
Q Consensus 707 ~KS~LQE~~QK~~~~~~Y~~v~~--~~Hd-k~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L 770 (957)
||+.|+||||+.+..+.|..+.. ++|. +.|+++|+|+|..+|.|.|+|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 68999999999999887776543 3444 8999999999999999999999999999999999986
No 13
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.42 E-value=4.2e-13 Score=112.87 Aligned_cols=66 Identities=33% Similarity=0.413 Sum_probs=59.5
Q ss_pred hhHHHHHHhhhcCCceeeeecCCCCCCCCCC-ccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHH
Q 002166 839 SVSALKELCMTEGLGVVFQQQPPSSANSVQK-DEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 906 (957)
Q Consensus 839 pVglLNELcqkeGL~v~f~~~~~~~sGp~h~-keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL 906 (957)
|++.|||||++.++.++|+.. ...+++|. +.|+++|+|+|+.|+.|.|+|||+||+.||+.||..|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYI--EEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE--EEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEE--EEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 789999999999999999874 24566555 8999999999999999999999999999999999876
No 14
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.41 E-value=5.2e-13 Score=111.20 Aligned_cols=67 Identities=30% Similarity=0.368 Sum_probs=57.9
Q ss_pred ChhHHHHHHhhhcCC-ceeeeecCCCCCCCCCCccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHH
Q 002166 838 GSVSALKELCMTEGL-GVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 906 (957)
Q Consensus 838 NpVglLNELcqkeGL-~v~f~~~~~~~sGp~h~keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL 906 (957)
||++.|+|+|++.++ .+.|.. ....|+.|.+.|+|.|.|+|+.++.|.|+|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~--~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYEL--VEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEE--eeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 799999999999855 444443 2346888889999999999999999999999999999999999875
No 15
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.41 E-value=6.3e-13 Score=111.16 Aligned_cols=67 Identities=33% Similarity=0.417 Sum_probs=59.9
Q ss_pred hhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHHh
Q 002166 839 SVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLR 907 (957)
Q Consensus 839 pVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL~ 907 (957)
|++.|+|+|++.++.+.|... ...|+.|.+.|+|.|.|+|+.++.|.|+|||+||++||+.||..|.
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~--~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L~ 67 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELV--KEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSLK 67 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEE--eeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhcC
Confidence 689999999999997777653 2368889999999999999999999999999999999999999873
No 16
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.39 E-value=7.7e-13 Score=135.17 Aligned_cols=73 Identities=25% Similarity=0.239 Sum_probs=64.8
Q ss_pred CCCChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHHhhcc
Q 002166 835 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMF 910 (957)
Q Consensus 835 ~~~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL~s~~ 910 (957)
+..||++.||||||++++.. ++. ..++|++|.+.|+++|.|+|+.||+|.|+|||+|+|+||+.||..|.+..
T Consensus 107 K~kNpKS~LQE~~Qk~~~~~-y~~--i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~~ 179 (183)
T PHA03103 107 KDKNPCTVINEYCQITSRDW-SIN--ITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILNYV 179 (183)
T ss_pred ccCChhHHHHHHHHHhCCCe-EEE--EEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhcc
Confidence 45699999999999998886 443 24689999999999999999999999999999999999999999997643
No 17
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.39 E-value=2.9e-12 Score=130.64 Aligned_cols=74 Identities=23% Similarity=0.279 Sum_probs=65.2
Q ss_pred CCCChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHHhhcc
Q 002166 835 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMF 910 (957)
Q Consensus 835 ~~~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL~s~~ 910 (957)
...||++.||||||+.+....|.. +.++|++|.+.|++.|.|+|+.||.|.|+|||+|+|+||+.||..|....
T Consensus 106 k~~DpKS~LQE~~Q~~~~~l~Y~l--i~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~~ 179 (183)
T PHA02701 106 KTLNPVSAVNEFCMRTHRPLEFCE--TRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINNC 179 (183)
T ss_pred CCCCccHHHHHHHHhcCCCCeEEE--EEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhhc
Confidence 356999999999999988775443 35679999999999999999999999999999999999999999996543
No 18
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=99.39 E-value=8.9e-13 Score=151.65 Aligned_cols=164 Identities=18% Similarity=0.187 Sum_probs=119.2
Q ss_pred eEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhccccC-----CCCCCCCCCCCCCC
Q 002166 722 VEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKS-----DSGSGHGDGSRFSN 794 (957)
Q Consensus 722 ~~Y~~v~~--~~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L~~~~~a~~~~-----~~~~~~~D~~~~p~ 794 (957)
..|..+.. +.|.+.|.++|.|+|..+. ||.|++.||+.|++.+.+.--+.++. ...++++|..+
T Consensus 10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 80 (542)
T KOG2777|consen 10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQAD--- 80 (542)
T ss_pred cccccccccCCCCCCcccceEEecccccc------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhH---
Confidence 56666544 5699999999999999885 99999999999999987632111100 00111111110
Q ss_pred cccccccCcCCCCCCCCCCcCcCCCCCCCCcCCCcccCCCCCCChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEE
Q 002166 795 ANENCFMGEINSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYA 874 (957)
Q Consensus 795 ~~eN~f~~~~ns~~~~~~s~~d~~sse~srl~~~~l~~s~~~~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~ 874 (957)
..+.......|||++|+||++ |+.+.|+.+ .|+.|.+.|.|
T Consensus 81 ---------------------------------~~~~~~~~~~npv~ll~e~~~--~~~~~~~~~----~~~~~~~~F~~ 121 (542)
T KOG2777|consen 81 ---------------------------------AFLSLGKEGKNPVSLLHELAN--GLFFDFVNE----SGPQHAPKFVM 121 (542)
T ss_pred ---------------------------------HHHhhhhccCCchHHHHHHhc--ccceeeecc----CCCCCCceEEE
Confidence 000111237799999999998 999999875 89999999999
Q ss_pred EEEECCEEEeecccCCHHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCCCCCCCCCCcchhhhhcC
Q 002166 875 QVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMFGQFPQKHQGSPRSLQGMPNKRLKPEFPRVLQR 942 (957)
Q Consensus 875 qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL~s~~~~~~pkrq~sp~~~~g~~~~~l~q~~~~~v~r 942 (957)
+|+|||+.|..| |+|||+||++||++||+.|+.+.-..... ...+. ...++.+.+.+..
T Consensus 122 ~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~~~~~~~-------~~~~~-~e~~~~~~~~Ia~ 180 (542)
T KOG2777|consen 122 SVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKIDENPERP-------SEALT-LENPSTLGDEIAE 180 (542)
T ss_pred EEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhccCCcccc-------ccccc-ccCCChHHHHHHH
Confidence 999999999777 99999999999999999999876543332 22233 5667777777654
No 19
>PRK12371 ribonuclease III; Reviewed
Probab=99.38 E-value=1.1e-12 Score=138.45 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=61.6
Q ss_pred CCchHHHHHHHHhcC-CCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002166 705 ETPSGVLQDIAMKCG-TKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 772 (957)
Q Consensus 705 ~n~KS~LQE~~QK~~-~~~~Y~~v~~--~~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L~~ 772 (957)
.+||+.||||||+++ ..++|+++.. ++|++.|+|+|+|+|+.+|+|.|+|||+|||+||+.||++|..
T Consensus 161 ~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 161 RDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 378999999999875 5689998754 5799999999999999999999999999999999999999864
No 20
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.32 E-value=3.1e-13 Score=144.78 Aligned_cols=119 Identities=22% Similarity=0.336 Sum_probs=94.9
Q ss_pred ceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEec-cCC-Cccchhhhcc
Q 002166 256 TSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCV-KSG-SRKSLFNVFQ 333 (957)
Q Consensus 256 ~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr-~sg-~~KsL~~lfp 333 (957)
..+||+.||++.+ ||. +++++||+.|||.+...||..|+.+|||++++|. +++.|=.|. .+| ..|+|..+-
T Consensus 126 ~~~yV~kRP~vde---FL~-~~s~~~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~--~RlyR~~C~~~~g~yvKdls~~~- 198 (262)
T KOG1605|consen 126 HQVYVRKRPHVDE---FLS-RVSKWYELVLFTASLEVYADPLLDILDPDRKIIS--HRLYRDSCTLKDGNYVKDLSVLG- 198 (262)
T ss_pred eEEEEEcCCCHHH---HHH-HhHHHHHHHHHHhhhHHHHHHHHHHccCCCCeee--eeecccceEeECCcEEEEcceec-
Confidence 4689999999999 999 9999999999999999999999999999999998 555666676 444 679986554
Q ss_pred CCCCCCcEEEEEcCCcccCCCCCCCCeEEeccccCccCchhhhcccCchHHHHHHHHhhh
Q 002166 334 DGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNV 393 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~V 393 (957)
++.+-++||||.+..+..+.+|.|. |+.| |..+.+. .|...+-.|+.+
T Consensus 199 ---~dL~~viIiDNsP~sy~~~p~NgIp-I~sw--~~d~~D~------eLL~LlpfLe~L 246 (262)
T KOG1605|consen 199 ---RDLSKVIIVDNSPQSYRLQPENGIP-IKSW--FDDPTDT------ELLKLLPFLEAL 246 (262)
T ss_pred ---cCcccEEEEcCChHHhccCccCCCc-cccc--ccCCChH------HHHHHHHHHHHh
Confidence 4678999999999999999888885 5544 2333322 356666666554
No 21
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.31 E-value=4.8e-12 Score=134.04 Aligned_cols=69 Identities=29% Similarity=0.498 Sum_probs=63.2
Q ss_pred CCchHHHHHHHHhcCC-CeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 002166 705 ETPSGVLQDIAMKCGT-KVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773 (957)
Q Consensus 705 ~n~KS~LQE~~QK~~~-~~~Y~~v~~--~~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L~~~ 773 (957)
..||+.||||+|+.+. .+.|+++.. ++|++.|+|+|+|+|..+|+|.|+|||+|||.||+.||+.|...
T Consensus 161 ~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~ 232 (235)
T COG0571 161 KDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVK 232 (235)
T ss_pred cChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhccc
Confidence 5799999999999885 589999876 46999999999999999999999999999999999999999653
No 22
>PRK14718 ribonuclease III; Provisional
Probab=99.26 E-value=1.4e-11 Score=139.44 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=60.8
Q ss_pred CCchHHHHHHHHhcCCC-eEEEEeee--cCCCceEEEEEEECCE-EEEEeecCCHHHHHHHHHHHHHHHHH
Q 002166 705 ETPSGVLQDIAMKCGTK-VEFRPALV--ASTELQFSIEAWFAGE-KIGEGIGRTRREAQRQAAEGSIKHLA 771 (957)
Q Consensus 705 ~n~KS~LQE~~QK~~~~-~~Y~~v~~--~~Hdk~FtveV~I~G~-~~GeG~GkSKKEAEq~AAk~AL~~L~ 771 (957)
.+|||.||||||+++.. ++|+++.+ ++|++.|+|+|+|+|. .+|+|+|+|||+|||+||+.||++|.
T Consensus 151 kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~ 221 (467)
T PRK14718 151 KDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVT 221 (467)
T ss_pred cCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 46899999999999865 79999765 6799999999999995 55999999999999999999999996
No 23
>PRK12372 ribonuclease III; Reviewed
Probab=99.22 E-value=2.9e-11 Score=135.88 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=60.4
Q ss_pred CchHHHHHHHHhcCCC-eEEEEeee--cCCCceEEEEEEECCE-EEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002166 706 TPSGVLQDIAMKCGTK-VEFRPALV--ASTELQFSIEAWFAGE-KIGEGIGRTRREAQRQAAEGSIKHLAN 772 (957)
Q Consensus 706 n~KS~LQE~~QK~~~~-~~Y~~v~~--~~Hdk~FtveV~I~G~-~~GeG~GkSKKEAEq~AAk~AL~~L~~ 772 (957)
+||+.||||||+++.. ++|+++.+ ++|++.|+++|+|+|. .+|+|.|+|||+|||+||+.||++|..
T Consensus 152 D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 152 DAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred CHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 5899999999999864 79998765 5799999999999995 568999999999999999999999974
No 24
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.14 E-value=1.5e-10 Score=120.03 Aligned_cols=70 Identities=24% Similarity=0.420 Sum_probs=62.1
Q ss_pred CCCCchHHHHHHHHhcCCC-eEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002166 703 STETPSGVLQDIAMKCGTK-VEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 772 (957)
Q Consensus 703 ~~~n~KS~LQE~~QK~~~~-~~Y~~v~~--~~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L~~ 772 (957)
...+||+.||||||+.+.. ++|+++.+ +.|.+.|+++|+|+|+.+|+|.|+|||+||++||+.||+.|..
T Consensus 156 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 156 LVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred ccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 3457999999999998864 79998754 4578999999999999999999999999999999999999864
No 25
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.14 E-value=1.7e-10 Score=119.33 Aligned_cols=127 Identities=15% Similarity=0.132 Sum_probs=82.6
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCc-cccccccCeE--E---eccCC--Cccchhh
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNL-INTKELLDRI--V---CVKSG--SRKSLFN 330 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~l-Fg~~~l~~RI--i---sr~sg--~~KsL~~ 330 (957)
++..|||+++ ||+ .+++.||+.|||.+...||..+++.|++.+.- +...-+.++- + +...| ..|.|..
T Consensus 43 ~~~kRP~l~e---FL~-~~~~~feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~ 118 (195)
T TIGR02245 43 EELMRPYLHE---FLT-SAYEDYDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGV 118 (195)
T ss_pred eEEeCCCHHH---HHH-HHHhCCEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEeecHH
Confidence 6789999999 999 89999999999999999999999999864421 1100011111 1 11223 3688998
Q ss_pred hccCCC--CCCcEEEEEcCCcccCCCCCCCCeEEeccccCccCchhhhcccCchHHHHHHHHhhhc
Q 002166 331 VFQDGT--CHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR 394 (957)
Q Consensus 331 lfp~g~--~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh 394 (957)
+...-+ .+.+-+|||||.+.....+.+|.| .|++|. ....+ ...+-.|...+..|+.+.
T Consensus 119 lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i-~I~~f~--~~~~~--~~~D~eL~~L~~yL~~la 179 (195)
T TIGR02245 119 IWALLPEFYSMKNTIMFDDLRRNFLMNPQNGL-KIRPFK--KAHAN--RGTDQELLKLTQYLKTIA 179 (195)
T ss_pred hhhhcccCCCcccEEEEeCCHHHHhcCCCCcc-ccCCcc--ccCCC--CcccHHHHHHHHHHHHHh
Confidence 753211 256789999999999988876665 466663 11101 112224555566666553
No 26
>PRK12371 ribonuclease III; Reviewed
Probab=99.11 E-value=1.3e-10 Score=122.84 Aligned_cols=72 Identities=19% Similarity=0.106 Sum_probs=62.4
Q ss_pred CCChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHHhh
Q 002166 836 LMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 908 (957)
Q Consensus 836 ~~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL~s 908 (957)
..||++.|+||||+.+...+.|.. +..+|+.|.+.|++.|.|+|+.+|+|.|+|||+|+|.||+.||..|..
T Consensus 160 ~~d~Ks~LqE~~q~~~~~~p~Y~~-~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 160 RRDAKTELQEWAHAQFGVTPVYRV-DSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred cCCHHHHHHHHHHhcCCCCCeEEE-EEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 359999999999987665444443 345799999999999999999999999999999999999999999854
No 27
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.08 E-value=3.1e-10 Score=116.54 Aligned_cols=68 Identities=28% Similarity=0.459 Sum_probs=60.6
Q ss_pred CCCCchHHHHHHHHhcCC-CeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002166 703 STETPSGVLQDIAMKCGT-KVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 770 (957)
Q Consensus 703 ~~~n~KS~LQE~~QK~~~-~~~Y~~v~~--~~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L 770 (957)
...+||+.||||||+++. .++|+++.. +.|.+.|++.|.++|+.+|+|.|+|||+||++||+.||++|
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 345799999999999775 689998744 46889999999999999999999999999999999999875
No 28
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.08 E-value=2.4e-10 Score=121.24 Aligned_cols=72 Identities=28% Similarity=0.354 Sum_probs=68.3
Q ss_pred CCChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHHhh
Q 002166 836 LMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 908 (957)
Q Consensus 836 ~~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL~s 908 (957)
..||.+.|||+||..++..+.|.+ +..+|++|.+.|++.|.|+|+++|+|.|+|||+|+|.||+.||.+|..
T Consensus 160 ~~D~Kt~LQe~~q~~~~~~p~Y~~-v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~ 231 (235)
T COG0571 160 FKDPKTRLQELLQAQGLVLPEYRL-VKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGV 231 (235)
T ss_pred ccChhHHHHHHHHhcCCCCCeEEE-eeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhcc
Confidence 379999999999999999999998 777899999999999999999999999999999999999999999864
No 29
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.04 E-value=4.7e-10 Score=116.23 Aligned_cols=73 Identities=27% Similarity=0.367 Sum_probs=64.3
Q ss_pred CCCChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHHhh
Q 002166 835 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 908 (957)
Q Consensus 835 ~~~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL~s 908 (957)
...||++.|+|+|+++++..+.|.. +..+|+.|.+.|+++|.|+|+.+|.|.|+|||+||++||+.||..|+.
T Consensus 156 ~~~~pk~~L~e~~~~~~~~~p~y~~-~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 156 LVKDYKTRLQELLQGRGLPLPEYEL-VKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred ccCCHHHHHHHHHHHcCCCCCceEE-eeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 4569999999999999987655543 345788899999999999999999999999999999999999999864
No 30
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=98.98 E-value=1.1e-09 Score=112.68 Aligned_cols=71 Identities=25% Similarity=0.310 Sum_probs=60.4
Q ss_pred CCCChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHH
Q 002166 835 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 906 (957)
Q Consensus 835 ~~~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL 906 (957)
...||++.|+|+|++.++..+-|.. ....|+.|.+.|+++|.++|+.+|+|+|.|||+||++||+.||..|
T Consensus 150 ~~~~pk~~L~e~~~~~~~~~p~y~~-~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 150 TLKDYKTALQEWAQARGKPLPEYRL-IKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred ccCChHHHHHHHHHHcCCCCceEEE-ecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 4569999999999988875333332 2346888999999999999999999999999999999999999875
No 31
>PRK12372 ribonuclease III; Reviewed
Probab=98.97 E-value=1.3e-09 Score=122.87 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=72.8
Q ss_pred CCChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEECC-EEEeecccCCHHHHHHHHHHHHHHHHhhcc--CC
Q 002166 836 LMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDG-QVLGKGIGSTWDEAKMQAAEKALGSLRSMF--GQ 912 (957)
Q Consensus 836 ~~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~IgG-kvyG~G~G~SKKeAKqqAAk~AL~sL~s~~--~~ 912 (957)
..||++.|+||||+.++..+.|.. +..+|+.|.+.|++.|.|+| +.+++|+|+|||+|+|+||+.||..|..-. .-
T Consensus 150 ~~D~KS~LQE~~Q~~~~~~P~Y~l-v~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~~~~~~~ 228 (413)
T PRK12372 150 GKDAKTLLQEYLQGHKIALPTYTV-VATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMAAAPMLA 228 (413)
T ss_pred cCCHHHHHHHHHHhcCCCCCeeEE-eeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhcccchhc
Confidence 459999999999999998776764 45689999999999999998 567899999999999999999999998422 24
Q ss_pred CCccccCCCC
Q 002166 913 FPQKHQGSPR 922 (957)
Q Consensus 913 ~~pkrq~sp~ 922 (957)
..|||+-+.|
T Consensus 229 ~~~~~~~~~~ 238 (413)
T PRK12372 229 AKPKRSKNAR 238 (413)
T ss_pred cccccccccc
Confidence 5677876666
No 32
>PRK14718 ribonuclease III; Provisional
Probab=98.95 E-value=1.3e-09 Score=123.76 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=72.0
Q ss_pred CCChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEECCE-EEeecccCCHHHHHHHHHHHHHHHHhhccC--C
Q 002166 836 LMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQ-VLGKGIGSTWDEAKMQAAEKALGSLRSMFG--Q 912 (957)
Q Consensus 836 ~~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~IgGk-vyG~G~G~SKKeAKqqAAk~AL~sL~s~~~--~ 912 (957)
..||+++|+||||+.++..+.|.. +.++|+.|.+.|.+.|.|+|+ .+|+|+|+|||+|+|.||+.||..|..... -
T Consensus 150 ~kDyKS~LQE~~Qk~~~~~PeY~l-i~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~~~~~~~ 228 (467)
T PRK14718 150 GKDAKTLLQEYLQGHKIALPTYTV-VATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTAVAPMLA 228 (467)
T ss_pred ccCHHHHHHHHHHhcCCCCCeeEE-eeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhcccchhhh
Confidence 459999999999999999877765 456899999999999999995 569999999999999999999999984433 3
Q ss_pred CCccccCCCC
Q 002166 913 FPQKHQGSPR 922 (957)
Q Consensus 913 ~~pkrq~sp~ 922 (957)
..+||.-|.|
T Consensus 229 ~~~~~~~~~~ 238 (467)
T PRK14718 229 AKPKRSKSAR 238 (467)
T ss_pred hhhhcccccc
Confidence 3456665555
No 33
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=98.87 E-value=3.1e-09 Score=116.74 Aligned_cols=71 Identities=23% Similarity=0.267 Sum_probs=64.1
Q ss_pred CChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHHhhcc
Q 002166 837 MGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMF 910 (957)
Q Consensus 837 ~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL~s~~ 910 (957)
+.+|++|+|+|.+.++.++|.-. .+.|+.|.+.|++.|+|+.. -..|.|+|||.||++||+.+|..|+...
T Consensus 38 KS~IS~l~E~~~r~~~~v~fevl--~eeGp~H~~~fv~rvtvg~~-~a~GeG~sKK~AKh~AA~~~L~~lk~l~ 108 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEVL--REEGPPHMPNFVFRVTVGEI-TATGEGKSKKLAKHRAAEALLKELKKLP 108 (339)
T ss_pred CChHHHHHHHHHHhCCCcceeee--eccCCccCCCeEEEEEEeee-EEecCCCchhHHHHHHHHHHHHHHhcCC
Confidence 67999999999999999999863 56899999999999999954 5599999999999999999999998655
No 34
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=98.85 E-value=4.7e-09 Score=94.65 Aligned_cols=69 Identities=30% Similarity=0.289 Sum_probs=60.8
Q ss_pred CChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEECCEEEe----------ecccCCHHHHHHHHHHHHHHHH
Q 002166 837 MGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLG----------KGIGSTWDEAKMQAAEKALGSL 906 (957)
Q Consensus 837 ~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~IgGkvyG----------~G~G~SKKeAKqqAAk~AL~sL 906 (957)
+++++.|+|||++.+|+.+-|.. ..+.|++|.+.|.++|+|.+..++ .=--.+||+||..||+.||..|
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l-~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYEL-VSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEE-EeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 36899999999999999999987 577899999999999999998883 2234789999999999999987
No 35
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=98.73 E-value=4e-08 Score=111.53 Aligned_cols=185 Identities=16% Similarity=0.177 Sum_probs=111.9
Q ss_pred cCCCCCCchHHHHHHHHhcCC-CeEEEEeeecCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhccc
Q 002166 700 DVSSTETPSGVLQDIAMKCGT-KVEFRPALVASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRV 778 (957)
Q Consensus 700 ~~~~~~n~KS~LQE~~QK~~~-~~~Y~~v~~~~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L~~~~~a~~ 778 (957)
.+.+.......|+||+|.+.. .+.|+.-......-.|.+.|.+|+-.||.|.|.|||.|+..||+++|++|........
T Consensus 370 ~npngks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~~~ 449 (650)
T KOG4334|consen 370 ANPNGKSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLRVSE 449 (650)
T ss_pred eCCCCceeeehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcchhhhcc
Confidence 344555668999999999875 5789765445667889999999999999999999999999999999999976543211
Q ss_pred cCCCCCCCCCCCCCCCcccccccCcCCCCCCCCCCcCcCCCCCCCCcCCCcccCCCCCCChhHHHHHHh-hhcCCc-eee
Q 002166 779 KSDSGSGHGDGSRFSNANENCFMGEINSFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELC-MTEGLG-VVF 856 (957)
Q Consensus 779 ~~~~~~~~~D~~~~p~~~eN~f~~~~ns~~~~~~s~~d~~sse~srl~~~~l~~s~~~~NpVglLNELc-qkeGL~-v~f 856 (957)
... .|.---.+++..+|+.--+ +..+ +.+|+.... +....-.|-.+|.+-- ...||+ +..
T Consensus 450 ~n~-----~d~k~~~~~k~q~~le~F~----------~I~I-edprv~e~c--tk~~~psPy~iL~~cl~Rn~g~~d~~i 511 (650)
T KOG4334|consen 450 DNV-----CDGKVEEDGKQQGFLELFK----------KIKI-EDPRVVEMC--TKCAIPSPYNILRDCLSRNLGWNDLVI 511 (650)
T ss_pred ccc-----ccccccccccchhHHHHhh----------cccc-cCchHHHHh--hhcCCCCHHHHHHHHHHhhcCCcceee
Confidence 110 0111001111111211100 0000 011110000 0112335666665533 334552 222
Q ss_pred eecCCCCCCCCCCccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHHh
Q 002166 857 QQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLR 907 (957)
Q Consensus 857 ~~~~~~~sGp~h~keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL~ 907 (957)
..+ + -.++...-+|+|.| |+.-.+|+.++|+++||.|.+.-|+.|.
T Consensus 512 k~E-~-i~~~nqkse~im~~---Gkht~~~~cknkr~gkQlASQ~ilq~lH 557 (650)
T KOG4334|consen 512 KKE-M-IGNGNQKSEVIMIL---GKHTEEAECKNKRQGKQLASQRILQKLH 557 (650)
T ss_pred eee-c-cCCCCccceeEeee---ccceeeeeeechhHHHHHHHHHHHHHhC
Confidence 222 1 13444556788765 5666699999999999999999888775
No 36
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=98.39 E-value=7.2e-07 Score=80.65 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=54.6
Q ss_pred CchHHHHHHHHhcCC-CeEEEEeee--cCCCceEEEEEEECCEEEE----------EeecCCHHHHHHHHHHHHHHHH
Q 002166 706 TPSGVLQDIAMKCGT-KVEFRPALV--ASTELQFSIEAWFAGEKIG----------EGIGRTRREAQRQAAEGSIKHL 770 (957)
Q Consensus 706 n~KS~LQE~~QK~~~-~~~Y~~v~~--~~Hdk~FtveV~I~G~~~G----------eG~GkSKKEAEq~AAk~AL~~L 770 (957)
.+++.|+|+|+|++. .+.|++..+ ++|.+.|+..|.|.+..+. .=--.+||+|+..||+.||..|
T Consensus 2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 578999999999885 589999744 5789999999999998873 1223689999999999999877
No 37
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=97.97 E-value=4e-06 Score=99.13 Aligned_cols=189 Identities=17% Similarity=0.128 Sum_probs=117.0
Q ss_pred CeEEE------Eeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCC
Q 002166 721 KVEFR------PALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDSGSGHGDGSRF 792 (957)
Q Consensus 721 ~~~Y~------~v~~--~~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L~~~~~a~~~~~~~~~~~D~~~~ 792 (957)
.+.|+ ++.. +.|.++|+++|.+||..+ +..|.|||.|+..||.+-|+...-...+.- .-..--.|+...
T Consensus 385 rLQYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~-~a~gps~~~~~wh~~~k~lq~~~~p~ga~~--r~~~~ge~~a~~ 461 (816)
T KOG3792|consen 385 RLQYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPA-EAEGPSKKTAKWHAARKRLQNEGRPTGAAQ--RFGRMGEDPASM 461 (816)
T ss_pred cceeccccCCCceeccCCcccchhhhhhhhcCCcc-ccCCcccccchHHHHHHHhhccCCCccccc--cccccCCCcccC
Confidence 36777 5543 679999999999999998 899999999999999998877632111100 000001233322
Q ss_pred CCcccccccCc----CC--CCCCCCCCcCcCCCCCCCCcCCCcccCCCCCCChhHHHHHHhhhcCCceeeeecCCCCCC-
Q 002166 793 SNANENCFMGE----IN--SFGGQPLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSAN- 865 (957)
Q Consensus 793 p~~~eN~f~~~----~n--s~~~~~~s~~d~~sse~srl~~~~l~~s~~~~NpVglLNELcqkeGL~v~f~~~~~~~sG- 865 (957)
|..+.-.+.+. +| ...-.+. + .+-+..+-+.+.++ ...+|+++.|||- ..|++|+.-++ +|
T Consensus 462 p~~~~r~~as~ddr~a~~~~a~~~Pt--~--~~l~nVqr~vs~~~--~alK~vsd~L~Ek--~rg~k~El~se----t~~ 529 (816)
T KOG3792|consen 462 PEPKGRRPASVDDRHANEKHAGIYPT--E--EELENVQRQVSHLE--RALKLVSDELAEK--RRGDKYELPSE----TGT 529 (816)
T ss_pred CCCCCcccCCCcchhhhccccccCcc--H--HHHHHHHHhhhHHH--HhhcchhHHHhhh--ccccceecccc----cCC
Confidence 32221111110 00 0000000 0 00000000111222 3577999999997 44888876654 55
Q ss_pred CCCCccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHHhhc----cCCCCccccCCCCCCCCCC
Q 002166 866 SVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSM----FGQFPQKHQGSPRSLQGMP 928 (957)
Q Consensus 866 p~h~keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL~s~----~~~~~pkrq~sp~~~~g~~ 928 (957)
++|.++|++-|+++|+.+ +|.|.+||-||..||-.|+..++.. ......|++ | ..+|..
T Consensus 530 gs~~~R~v~gV~rvG~~a-kG~~~~gd~a~~~a~Lca~~pt~~l~~~ia~~~~kk~~--~-~~~~~~ 592 (816)
T KOG3792|consen 530 GSHDKRFVKGVMRVGILA-KGLLLNGDRAVELALLCAEKPTSGLLPRIANLLPKKLV--P-DAEGFV 592 (816)
T ss_pred CCCCceeeeeeeeeehhh-ccccccchHHHHHHHHhccCccccchHHHHhhcccccc--c-cccccc
Confidence 899999999999999999 9999999999999999988877643 334445555 4 455555
No 38
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=97.86 E-value=3.7e-05 Score=87.34 Aligned_cols=68 Identities=16% Similarity=0.413 Sum_probs=56.5
Q ss_pred chHHHHHHHHhcC----C--Ce-EEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Q 002166 707 PSGVLQDIAMKCG----T--KV-EFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVY 774 (957)
Q Consensus 707 ~KS~LQE~~QK~~----~--~~-~Y~~v~~--~~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L~~~~ 774 (957)
+|+.||.+|-... . .+ .|.+++. +.+++.|+|.|+++|+.+|.|+|+|.|.|+..||+.||+.+...+
T Consensus 429 pkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~dF 505 (533)
T KOG1817|consen 429 PKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKMDF 505 (533)
T ss_pred cHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHhhh
Confidence 7999999994432 2 23 5665543 568999999999999999999999999999999999999997543
No 39
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.82 E-value=0.00016 Score=71.08 Aligned_cols=39 Identities=5% Similarity=0.224 Sum_probs=33.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhh
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL 301 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlL 301 (957)
++++|++.+++.+|+ ...|.++|.|+|.+.++..+++.+
T Consensus 71 ~~l~~g~~~ll~~l~---~~g~~~~i~S~~~~~~~~~~l~~~ 109 (188)
T TIGR01489 71 APIDPGFKEFIAFIK---EHGIDFIVISDGNDFFIDPVLEGI 109 (188)
T ss_pred CCCCccHHHHHHHHH---HcCCcEEEEeCCcHHHHHHHHHHc
Confidence 578899999888886 456999999999999999998874
No 40
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.76 E-value=2e-05 Score=80.10 Aligned_cols=81 Identities=17% Similarity=0.276 Sum_probs=56.3
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhcc
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~K----sL~~lfp 333 (957)
++++.||+.+++.+|+ .+.+.+.|.|++.+.++...++.+ +...+|+.|++.++. ..| .+..++.
T Consensus 92 ~~~~~~g~~~~L~~L~---~~g~~~~i~Tn~~~~~~~~~l~~~-------~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~ 161 (221)
T TIGR02253 92 YLRVYPGVRDTLMELR---ESGYRLGIITDGLPVKQWEKLERL-------GVRDFFDAVITSEEEGVEKPHPKIFYAALK 161 (221)
T ss_pred hCCCCCCHHHHHHHHH---HCCCEEEEEeCCchHHHHHHHHhC-------ChHHhccEEEEeccCCCCCCCHHHHHHHHH
Confidence 5688999999888886 446889999999999998888774 444556678876432 222 2222222
Q ss_pred CCCCCCcEEEEEcCCc
Q 002166 334 DGTCHPKMALVIDDRL 349 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR~ 349 (957)
.-+..++-+|+|+|+.
T Consensus 162 ~~~~~~~~~~~igDs~ 177 (221)
T TIGR02253 162 RLGVKPEEAVMVGDRL 177 (221)
T ss_pred HcCCChhhEEEECCCh
Confidence 2225667899999985
No 41
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.70 E-value=4.6e-05 Score=72.48 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=59.1
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Cc----cchhhhcc
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SR----KSLFNVFQ 333 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~----KsL~~lfp 333 (957)
..++.|++.+++..|+ ++.|.++|+|++.+.+...+++-+ +...+++.|++.++. .. .-+..+..
T Consensus 75 ~~~~~~~~~~~L~~l~---~~~~~~~i~Sn~~~~~~~~~l~~~-------~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~ 144 (176)
T PF13419_consen 75 KLQPYPGVRELLERLK---AKGIPLVIVSNGSRERIERVLERL-------GLDDYFDEIISSDDVGSRKPDPDAYRRALE 144 (176)
T ss_dssp GEEESTTHHHHHHHHH---HTTSEEEEEESSEHHHHHHHHHHT-------THGGGCSEEEEGGGSSSSTTSHHHHHHHHH
T ss_pred ccchhhhhhhhhhhcc---cccceeEEeecCCccccccccccc-------ccccccccccccchhhhhhhHHHHHHHHHH
Confidence 5788899999666665 578999999999999999999985 444556788887543 22 22444433
Q ss_pred CCCCCCcEEEEEcCCc
Q 002166 334 DGTCHPKMALVIDDRL 349 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR~ 349 (957)
...+.++-+|+|||+.
T Consensus 145 ~~~~~p~~~~~vgD~~ 160 (176)
T PF13419_consen 145 KLGIPPEEILFVGDSP 160 (176)
T ss_dssp HHTSSGGGEEEEESSH
T ss_pred HcCCCcceEEEEeCCH
Confidence 2236788899999985
No 42
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.66 E-value=0.00026 Score=74.79 Aligned_cols=80 Identities=13% Similarity=0.201 Sum_probs=57.5
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Cccc----hhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~Ks----L~~lfp~ 334 (957)
+++.||+.+++.+|+ ++-|.+.|.|++.+.++..+++. ++...+|+.|+|.++. ..|. +......
T Consensus 107 ~~l~pgv~e~L~~L~---~~g~~l~I~Tn~~~~~~~~~l~~-------~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~ 176 (248)
T PLN02770 107 LKPLNGLYKLKKWIE---DRGLKRAAVTNAPRENAELMISL-------LGLSDFFQAVIIGSECEHAKPHPDPYLKALEV 176 (248)
T ss_pred CCcCccHHHHHHHHH---HcCCeEEEEeCCCHHHHHHHHHH-------cCChhhCcEEEecCcCCCCCCChHHHHHHHHH
Confidence 467899999988887 56799999999999999999998 4445566788887542 1111 2222221
Q ss_pred CCCCCcEEEEEcCCc
Q 002166 335 GTCHPKMALVIDDRL 349 (957)
Q Consensus 335 g~~~~~mvVIIDDR~ 349 (957)
..+.++-+++|+|+.
T Consensus 177 ~~~~~~~~l~vgDs~ 191 (248)
T PLN02770 177 LKVSKDHTFVFEDSV 191 (248)
T ss_pred hCCChhHEEEEcCCH
Confidence 125677899999986
No 43
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.64 E-value=0.00014 Score=74.49 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=68.9
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCC-cHHHHHHHHHhhC--CCCCccccccccCeEEeccCC-CccchhhhccC
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMA-ERDYALEMWRLLD--PESNLINTKELLDRIVCVKSG-SRKSLFNVFQD 334 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG-tR~YA~~I~rlLD--P~g~lFg~~~l~~RIisr~sg-~~KsL~~lfp~ 334 (957)
-++++||+.+++.+|+ ++-+.+.|.|++ .+.|+..+++.++ =.|+-+....+|+.|++-++. ..|....++..
T Consensus 43 ~~~l~pGv~elL~~Lk---~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~ 119 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLK---DAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQK 119 (174)
T ss_pred EEEEcccHHHHHHHHH---HCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHH
Confidence 4678899999888887 577999999988 9999999999977 335444444566677776443 33443332221
Q ss_pred C------CCCCcEEEEEcCCcccCCCCCCCCeEE
Q 002166 335 G------TCHPKMALVIDDRLKVWDDKDQPRVHV 362 (957)
Q Consensus 335 g------~~~~~mvVIIDDR~dVW~~~~~~~v~v 362 (957)
. ...++-+++|||+..-........+.+
T Consensus 120 ~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~ 153 (174)
T TIGR01685 120 VNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTS 153 (174)
T ss_pred hhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEE
Confidence 0 156789999999986544443445544
No 44
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=97.62 E-value=0.00015 Score=81.37 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=88.7
Q ss_pred CCceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEec----cCC-Cccch
Q 002166 254 RDTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCV----KSG-SRKSL 328 (957)
Q Consensus 254 r~~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr----~sg-~~KsL 328 (957)
..|-+-++.|||+.- ||. .+++.|||.|||--.-.||.-++.-|||. .+|. .|+++- ++| ..|+|
T Consensus 207 ~~tGwRf~kRPgvD~---FL~-~~a~~yEIVi~sse~gmt~~pl~d~lDP~-g~Is-----YkLfr~~t~y~~G~HvKdl 276 (393)
T KOG2832|consen 207 YKTGWRFKKRPGVDY---FLG-HLAKYYEIVVYSSEQGMTVFPLLDALDPK-GYIS-----YKLFRGATKYEEGHHVKDL 276 (393)
T ss_pred hhcCceeccCchHHH---HHH-hhcccceEEEEecCCccchhhhHhhcCCc-ceEE-----EEEecCcccccCccchhhh
Confidence 346688999999998 998 99999999999999999999999999999 5566 788764 344 67999
Q ss_pred hhhccCCCCCCcEEEEEcCCcccCCCCCCCCeEEeccccCccCchhhhcccCchHHHHHHHHhhhc
Q 002166 329 FNVFQDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVR 394 (957)
Q Consensus 329 ~~lfp~g~~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh 394 (957)
+.|-. +.+-|||||=......-+..| -+.+++|. ++.++.+|-.....|+.||
T Consensus 277 s~LNR----dl~kVivVd~d~~~~~l~P~N-~l~l~~W~--------Gn~dDt~L~dL~~FL~~ia 329 (393)
T KOG2832|consen 277 SKLNR----DLQKVIVVDFDANSYKLQPEN-MLPLEPWS--------GNDDDTSLFDLLAFLEYIA 329 (393)
T ss_pred hhhcc----ccceeEEEEccccccccCccc-ccccCcCC--------CCcccchhhhHHHHHHHHH
Confidence 98875 689999999777777666443 45566662 2222324555555555444
No 45
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=97.62 E-value=9.7e-05 Score=86.57 Aligned_cols=65 Identities=22% Similarity=0.367 Sum_probs=56.2
Q ss_pred CCCchHHHHHHHHhcCCCeEEEEeee--cCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 002166 704 TETPSGVLQDIAMKCGTKVEFRPALV--ASTELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANV 773 (957)
Q Consensus 704 ~~n~KS~LQE~~QK~~~~~~Y~~v~~--~~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L~~~ 773 (957)
..|+.+.|.|+++ .+.|..+.. +.|.+.|.+.|.|||+.+.-| |+|||+|+++||..||+.|...
T Consensus 89 ~~npv~ll~e~~~----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~ 155 (542)
T KOG2777|consen 89 GKNPVSLLHELAN----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKI 155 (542)
T ss_pred cCCchHHHHHHhc----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhc
Confidence 5689999999999 455555544 568999999999999999777 9999999999999999999764
No 46
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.53 E-value=0.00054 Score=69.16 Aligned_cols=82 Identities=18% Similarity=0.155 Sum_probs=58.0
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhcc
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~K----sL~~lfp 333 (957)
.+++.||+.+++..|+ .+.|.+.|+|++.+.++..+++.+ +...+|+.|+|.++. ..| .+..+..
T Consensus 83 ~~~~~~g~~~~L~~l~---~~g~~~~i~S~~~~~~~~~~l~~~-------~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~ 152 (213)
T TIGR01449 83 LTSVFPGVEATLGALR---AKGLRLGLVTNKPTPLARPLLELL-------GLAKYFSVLIGGDSLAQRKPHPDPLLLAAE 152 (213)
T ss_pred cCccCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHc-------CcHhhCcEEEecCCCCCCCCChHHHHHHHH
Confidence 4678999999888886 456999999999999999999984 333455678887542 222 2333333
Q ss_pred CCCCCCcEEEEEcCCcc
Q 002166 334 DGTCHPKMALVIDDRLK 350 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR~d 350 (957)
.....++-+++|+|+..
T Consensus 153 ~~~~~~~~~~~igDs~~ 169 (213)
T TIGR01449 153 RLGVAPQQMVYVGDSRV 169 (213)
T ss_pred HcCCChhHeEEeCCCHH
Confidence 22256677999999853
No 47
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.48 E-value=0.00078 Score=68.78 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=58.1
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-----Cccchhhhcc
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----SRKSLFNVFQ 333 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-----~~KsL~~lfp 333 (957)
.+++.||+.+++.+|+ ++.+.+.|.|++.+.++..+++.+ +...+|+.|++.++. +...+.++..
T Consensus 80 ~~~~~~g~~~~l~~L~---~~g~~~~i~S~~~~~~~~~~l~~~-------gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~ 149 (214)
T PRK13288 80 LVTEYETVYETLKTLK---KQGYKLGIVTTKMRDTVEMGLKLT-------GLDEFFDVVITLDDVEHAKPDPEPVLKALE 149 (214)
T ss_pred hcccCcCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHc-------CChhceeEEEecCcCCCCCCCcHHHHHHHH
Confidence 3568899999888886 456899999999999999999884 445566788886542 1122333333
Q ss_pred CCCCCCcEEEEEcCCc
Q 002166 334 DGTCHPKMALVIDDRL 349 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR~ 349 (957)
.....++-+++|+|+.
T Consensus 150 ~~~~~~~~~~~iGDs~ 165 (214)
T PRK13288 150 LLGAKPEEALMVGDNH 165 (214)
T ss_pred HcCCCHHHEEEECCCH
Confidence 2224567889999985
No 48
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.47 E-value=0.00025 Score=72.32 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=56.9
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCC-CCccccccccCeEEeccCC-Cc----cchhhhcc
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPE-SNLINTKELLDRIVCVKSG-SR----KSLFNVFQ 333 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~-g~lFg~~~l~~RIisr~sg-~~----KsL~~lfp 333 (957)
+++.||+.+++..|+ ++.|.+.|.|++.+.++..+++.++=. +.+| +.|+|.++- .. .-+..++.
T Consensus 86 ~~l~~G~~~~L~~L~---~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f------~~i~~~~~~~~~KP~p~~~~~a~~ 156 (220)
T TIGR03351 86 PVALPGAEEAFRSLR---SSGIKVALTTGFDRDTAERLLEKLGWTVGDDV------DAVVCPSDVAAGRPAPDLILRAME 156 (220)
T ss_pred CccCCCHHHHHHHHH---HCCCEEEEEeCCchHHHHHHHHHhhhhhhccC------CEEEcCCcCCCCCCCHHHHHHHHH
Confidence 478899999888886 567999999999999999999986433 1444 478887542 11 22333333
Q ss_pred CCCCC-CcEEEEEcCCc
Q 002166 334 DGTCH-PKMALVIDDRL 349 (957)
Q Consensus 334 ~g~~~-~~mvVIIDDR~ 349 (957)
...+. ++-+|+|+|+.
T Consensus 157 ~~~~~~~~~~~~igD~~ 173 (220)
T TIGR03351 157 LTGVQDVQSVAVAGDTP 173 (220)
T ss_pred HcCCCChhHeEEeCCCH
Confidence 22244 57899999984
No 49
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.46 E-value=0.00057 Score=69.31 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=57.2
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-----Cccchhhhcc
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----SRKSLFNVFQ 333 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-----~~KsL~~lfp 333 (957)
.+++.||+.+++.+|+ ++-|.+.|+|++.+.++..+++.+ +..++|+.|++.++. +..-+..+..
T Consensus 73 ~~~~~~g~~~~L~~L~---~~g~~~~i~Sn~~~~~~~~~l~~~-------~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~ 142 (205)
T TIGR01454 73 EVEVFPGVPELLAELR---ADGVGTAIATGKSGPRARSLLEAL-------GLLPLFDHVIGSDEVPRPKPAPDIVREALR 142 (205)
T ss_pred ccccCCCHHHHHHHHH---HCCCeEEEEeCCchHHHHHHHHHc-------CChhheeeEEecCcCCCCCCChHHHHHHHH
Confidence 3578899999888887 557999999999999999998874 334455678776442 1122333332
Q ss_pred CCCCCCcEEEEEcCCc
Q 002166 334 DGTCHPKMALVIDDRL 349 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR~ 349 (957)
...+.++-+++|+|+.
T Consensus 143 ~~~~~~~~~l~igD~~ 158 (205)
T TIGR01454 143 LLDVPPEDAVMVGDAV 158 (205)
T ss_pred HcCCChhheEEEcCCH
Confidence 2225677899999985
No 50
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.43 E-value=0.00079 Score=67.19 Aligned_cols=78 Identities=19% Similarity=0.288 Sum_probs=51.8
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-C----ccc----hh
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-S----RKS----LF 329 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~----~Ks----L~ 329 (957)
.+++.||+.+ +|+ +.. |.++|+|++.+.++..+++.+ +...+|+.|+|.++. . .|- +.
T Consensus 82 ~~~~~~g~~~---~L~-~L~--~~~~i~Tn~~~~~~~~~l~~~-------gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~ 148 (184)
T TIGR01993 82 KLKPDPELRN---LLL-RLP--GRKIIFTNGDRAHARRALNRL-------GIEDCFDGIFCFDTANPDYLLPKPSPQAYE 148 (184)
T ss_pred hCCCCHHHHH---HHH-hCC--CCEEEEeCCCHHHHHHHHHHc-------CcHhhhCeEEEeecccCccCCCCCCHHHHH
Confidence 3567789988 554 333 679999999999999999884 333455678887542 2 132 23
Q ss_pred hhccCCCCCCcEEEEEcCCc
Q 002166 330 NVFQDGTCHPKMALVIDDRL 349 (957)
Q Consensus 330 ~lfp~g~~~~~mvVIIDDR~ 349 (957)
.++......++-+++|||+.
T Consensus 149 ~~~~~~~~~~~~~l~vgD~~ 168 (184)
T TIGR01993 149 KALREAGVDPERAIFFDDSA 168 (184)
T ss_pred HHHHHhCCCccceEEEeCCH
Confidence 33222225677889999985
No 51
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=97.42 E-value=0.001 Score=67.32 Aligned_cols=79 Identities=15% Similarity=0.028 Sum_probs=56.0
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCcc----chhhhccCCC
Q 002166 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRK----SLFNVFQDGT 336 (957)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg~~K----sL~~lfp~g~ 336 (957)
+..|+..+++..|+ .+-+.+.|.|++.+.++..+++. ++...+|+.|++.++...| .+..++....
T Consensus 106 ~~~~~~~~~L~~l~---~~g~~~~i~T~~~~~~~~~~l~~-------~gl~~~f~~~~~~~~~~~KP~p~~~~~~~~~~~ 175 (197)
T TIGR01548 106 ETLLTPKGLLRELH---RAPKGMAVVTGRPRKDAAKFLTT-------HGLEILFPVQIWMEDCPPKPNPEPLILAAKALG 175 (197)
T ss_pred ccccCHHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHH-------cCchhhCCEEEeecCCCCCcCHHHHHHHHHHhC
Confidence 45567789888886 45689999999999999999998 5555666788887653112 2222222223
Q ss_pred CCCcEEEEEcCCc
Q 002166 337 CHPKMALVIDDRL 349 (957)
Q Consensus 337 ~~~~mvVIIDDR~ 349 (957)
++++-+++|+|+.
T Consensus 176 ~~~~~~i~vGD~~ 188 (197)
T TIGR01548 176 VEACHAAMVGDTV 188 (197)
T ss_pred cCcccEEEEeCCH
Confidence 6777899999985
No 52
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.40 E-value=0.00099 Score=65.15 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=51.9
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEecc-CCCcc----chhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGSRK----SLFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~-sg~~K----sL~~lfp~ 334 (957)
+++.||+.+++..|+ .+-|.++|+|++.+.+ ..++.- ++...+|+.|++-+ .+..| .+..++..
T Consensus 84 ~~~~~g~~~~l~~l~---~~g~~~~i~Tn~~~~~-~~~~~~-------~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~ 152 (183)
T TIGR01509 84 LKPLPGVEPLLEALR---ARGKKLALLTNSPRDH-AVLVQE-------LGLRDLFDVVIFSGDVGRGKPDPDIYLLALKK 152 (183)
T ss_pred CccCcCHHHHHHHHH---HCCCeEEEEeCCchHH-HHHHHh-------cCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHH
Confidence 678899999666665 4568999999999999 555543 33344556777642 22222 23333332
Q ss_pred CCCCCcEEEEEcCCc
Q 002166 335 GTCHPKMALVIDDRL 349 (957)
Q Consensus 335 g~~~~~mvVIIDDR~ 349 (957)
....++-+|+|||+.
T Consensus 153 ~~~~~~~~~~vgD~~ 167 (183)
T TIGR01509 153 LGLKPEECLFVDDSP 167 (183)
T ss_pred cCCCcceEEEEcCCH
Confidence 225678899999985
No 53
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.40 E-value=0.00089 Score=72.09 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=56.5
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Cccc----hhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~Ks----L~~lfp~ 334 (957)
+++.||+.+++..|+ +.-|-+.|.|++.+.++..+++.+ +...+|+.|++.++. ..|. +..+...
T Consensus 108 ~~l~pg~~e~L~~L~---~~g~~l~I~Tn~~~~~~~~~l~~~-------gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~ 177 (260)
T PLN03243 108 YRLRPGSREFVQALK---KHEIPIAVASTRPRRYLERAIEAV-------GMEGFFSVVLAAEDVYRGKPDPEMFMYAAER 177 (260)
T ss_pred cccCCCHHHHHHHHH---HCCCEEEEEeCcCHHHHHHHHHHc-------CCHhhCcEEEecccCCCCCCCHHHHHHHHHH
Confidence 567899999888886 567999999999999999999984 444566788887542 1121 1112111
Q ss_pred CCCCCcEEEEEcCCc
Q 002166 335 GTCHPKMALVIDDRL 349 (957)
Q Consensus 335 g~~~~~mvVIIDDR~ 349 (957)
....++-+|+|+|+.
T Consensus 178 l~~~p~~~l~IgDs~ 192 (260)
T PLN03243 178 LGFIPERCIVFGNSN 192 (260)
T ss_pred hCCChHHeEEEcCCH
Confidence 125678899999984
No 54
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.38 E-value=0.001 Score=75.91 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=59.2
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Cccc----hhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~Ks----L~~lfp~ 334 (957)
+.+.||+.+++.+|+ ..-+.+.|.|++.+.|+..+++. ++...+|+.|++.++. ..|- +......
T Consensus 215 ~~l~pGa~ElL~~Lk---~~GiklaIaSn~~~~~~~~~L~~-------lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~ 284 (381)
T PLN02575 215 YRLRTGSQEFVNVLM---NYKIPMALVSTRPRKTLENAIGS-------IGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQL 284 (381)
T ss_pred CCcCcCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHH-------cCCHHHceEEEecCcCCCCCCCHHHHHHHHHH
Confidence 456799999888887 56799999999999999999998 5666677899998653 1121 1222211
Q ss_pred CCCCCcEEEEEcCCcc
Q 002166 335 GTCHPKMALVIDDRLK 350 (957)
Q Consensus 335 g~~~~~mvVIIDDR~d 350 (957)
....++-+|+|+|+..
T Consensus 285 lgl~Peecl~IGDS~~ 300 (381)
T PLN02575 285 LNFIPERCIVFGNSNQ 300 (381)
T ss_pred cCCCcccEEEEcCCHH
Confidence 1256788999999753
No 55
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.34 E-value=0.0005 Score=74.02 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=56.2
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhcc
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~K----sL~~lfp 333 (957)
.+++.||+.++++.|+ .+-|.+.|+|++.+.++..+++.++ ...+|+.|+|.++. ..| .+..++.
T Consensus 99 ~~~~~~g~~e~L~~Lk---~~g~~l~ivTn~~~~~~~~~l~~~~-------i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~ 168 (272)
T PRK13223 99 LTVVYPGVRDTLKWLK---KQGVEMALITNKPERFVAPLLDQMK-------IGRYFRWIIGGDTLPQKKPDPAALLFVMK 168 (272)
T ss_pred CCccCCCHHHHHHHHH---HCCCeEEEEECCcHHHHHHHHHHcC-------cHhhCeEEEecCCCCCCCCCcHHHHHHHH
Confidence 3578899999888886 4568999999999999998888743 23345578886432 111 2333333
Q ss_pred CCCCCCcEEEEEcCCc
Q 002166 334 DGTCHPKMALVIDDRL 349 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR~ 349 (957)
.....++-+++|||+.
T Consensus 169 ~~g~~~~~~l~IGD~~ 184 (272)
T PRK13223 169 MAGVPPSQSLFVGDSR 184 (272)
T ss_pred HhCCChhHEEEECCCH
Confidence 2225678899999984
No 56
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=97.33 E-value=0.0014 Score=64.26 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=36.4
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg 309 (957)
++++|++.+++..|+ +.-+.++|.|.|.+.|+..+++.+.=+ .+|+
T Consensus 72 ~~~~~g~~~~l~~l~---~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~ 117 (177)
T TIGR01488 72 VALRPGARELISWLK---ERGIDTVIVSGGFDFFVEPVAEKLGID-DVFA 117 (177)
T ss_pred CCcCcCHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCc-hhee
Confidence 346899999888886 456899999999999999999986433 3444
No 57
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.32 E-value=0.00097 Score=64.32 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=51.3
Q ss_pred eCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCcc----chhhhccCCCC
Q 002166 262 LRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRK----SLFNVFQDGTC 337 (957)
Q Consensus 262 LRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg~~K----sL~~lfp~g~~ 337 (957)
..||+.+++.+|+ ++-+.++|.|++.+.++..+++.+ -..+| +.|++.++...| .+..++....+
T Consensus 65 ~~~g~~e~l~~L~---~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f------~~i~~~~~~~~Kp~~~~~~~~~~~~~~ 133 (154)
T TIGR01549 65 YIRGAADLLKRLK---EAGIKLGIISNGSLRAQKLLLRKH--LGDYF------DLILGSDEFGAKPEPEIFLAALESLGL 133 (154)
T ss_pred eccCHHHHHHHHH---HCcCeEEEEeCCchHHHHHHHHHH--HHhcC------cEEEecCCCCCCcCHHHHHHHHHHcCC
Confidence 3489999888886 456899999999999999999984 22334 578877532122 23333322225
Q ss_pred CCcEEEEEcCC
Q 002166 338 HPKMALVIDDR 348 (957)
Q Consensus 338 ~~~mvVIIDDR 348 (957)
.+ -+++|+|+
T Consensus 134 ~~-~~l~iGDs 143 (154)
T TIGR01549 134 PP-EVLHVGDN 143 (154)
T ss_pred CC-CEEEEeCC
Confidence 56 68889997
No 58
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.31 E-value=0.00097 Score=72.34 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=54.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC--CccchhhhccCCCC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG--SRKSLFNVFQDGTC 337 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg--~~KsL~~lfp~g~~ 337 (957)
+++-||+.+++.+|+ .+.+.+.|.|++.+.++..+++.++ ..++|+.|++.+.. ....+..+......
T Consensus 141 ~~l~pg~~e~L~~L~---~~gi~laIvSn~~~~~~~~~L~~~g-------l~~~F~~vi~~~~~~~k~~~~~~~l~~~~~ 210 (273)
T PRK13225 141 LQLFPGVADLLAQLR---SRSLCLGILSSNSRQNIEAFLQRQG-------LRSLFSVVQAGTPILSKRRALSQLVAREGW 210 (273)
T ss_pred CCcCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcC-------ChhheEEEEecCCCCCCHHHHHHHHHHhCc
Confidence 466799999888887 5678999999999999999998854 33445567765442 11222222221114
Q ss_pred CCcEEEEEcCCc
Q 002166 338 HPKMALVIDDRL 349 (957)
Q Consensus 338 ~~~mvVIIDDR~ 349 (957)
.++-+++|+|+.
T Consensus 211 ~p~~~l~IGDs~ 222 (273)
T PRK13225 211 QPAAVMYVGDET 222 (273)
T ss_pred ChhHEEEECCCH
Confidence 567799999985
No 59
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=97.27 E-value=0.00041 Score=79.08 Aligned_cols=100 Identities=20% Similarity=0.321 Sum_probs=79.2
Q ss_pred CceEEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEec-cCC-Cccchhhhc
Q 002166 255 DTSVLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCV-KSG-SRKSLFNVF 332 (957)
Q Consensus 255 ~~~~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr-~sg-~~KsL~~lf 332 (957)
...+||..||++.+ ||. .+++.|+++++|...+.||+.|+++||+.+ .|+ ..+| |--|+ ..| ..|+|..++
T Consensus 246 ~~~~~v~kRp~l~~---fl~-~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~-~~lf-r~sc~~~~G~~ikDis~i~ 318 (390)
T COG5190 246 QHLVYVSKRPELDY---FLG-KLSKIHELVYFTASVKRYADPVLDILDSDK-VFS-HRLF-RESCVSYLGVYIKDISKIG 318 (390)
T ss_pred eeEEEEcCChHHHH---HHh-hhhhhEEEEEEecchhhhcchHHHhccccc-eee-hhhh-cccceeccCchhhhHHhhc
Confidence 36799999999999 887 889999999999999999999999999999 666 2222 22233 344 567888887
Q ss_pred cCCCCCCcEEEEEcCCcccCCCCCCCCeEEeccc
Q 002166 333 QDGTCHPKMALVIDDRLKVWDDKDQPRVHVVPAF 366 (957)
Q Consensus 333 p~g~~~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y 366 (957)
. +-.-++|||++.--|..+.++.| +++.+
T Consensus 319 r----~l~~viiId~~p~SY~~~p~~~i-~i~~W 347 (390)
T COG5190 319 R----SLDKVIIIDNSPASYEFHPENAI-PIEKW 347 (390)
T ss_pred c----CCCceEEeeCChhhhhhCcccee-ccCcc
Confidence 4 56889999999999988865554 56665
No 60
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.25 E-value=0.0011 Score=67.53 Aligned_cols=46 Identities=20% Similarity=0.149 Sum_probs=36.9
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg 309 (957)
++++||+.+++..|+ .+-+.++|.|+|.+.++..+++.+.=+. +|+
T Consensus 84 ~~~~~g~~~~l~~l~---~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~ 129 (219)
T TIGR00338 84 LPLTEGAEELVKTLK---EKGYKVAVISGGFDLFAEHVKDKLGLDA-AFA 129 (219)
T ss_pred CCcCCCHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCCc-eEe
Confidence 468899999777776 4579999999999999999999865332 554
No 61
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.25 E-value=0.00051 Score=69.16 Aligned_cols=80 Identities=8% Similarity=0.085 Sum_probs=53.9
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCccc----hhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~s-g~~Ks----L~~lfp~ 334 (957)
+++.|++.++++.|+ .+-|.++|.|||.+.++..+++.+ +...+|+.|++.++ +..|- +..++..
T Consensus 91 ~~~~~~~~~~L~~L~---~~g~~~~i~Sn~~~~~~~~~l~~~-------gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~ 160 (198)
T TIGR01428 91 LPPHPDVPAGLRALK---ERGYRLAILSNGSPAMLKSLVKHA-------GLDDPFDAVLSADAVRAYKPAPQVYQLALEA 160 (198)
T ss_pred CCCCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHC-------CChhhhheeEehhhcCCCCCCHHHHHHHHHH
Confidence 357799999666665 345999999999999999998874 33445668887643 22221 2222221
Q ss_pred CCCCCcEEEEEcCCc
Q 002166 335 GTCHPKMALVIDDRL 349 (957)
Q Consensus 335 g~~~~~mvVIIDDR~ 349 (957)
....++-+++|+|+.
T Consensus 161 ~~~~p~~~~~vgD~~ 175 (198)
T TIGR01428 161 LGVPPDEVLFVASNP 175 (198)
T ss_pred hCCChhhEEEEeCCH
Confidence 125677899999986
No 62
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.23 E-value=0.0019 Score=66.41 Aligned_cols=85 Identities=7% Similarity=0.120 Sum_probs=61.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-----CccchhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----SRKSLFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-----~~KsL~~lfp~ 334 (957)
.++.||+.+++.+|+ ++-|.++|.|++.+.++..+++. ++...+|+.|+|.+.. +...+..++..
T Consensus 91 ~~~~~g~~~~l~~l~---~~g~~~~i~S~~~~~~~~~~l~~-------~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~ 160 (222)
T PRK10826 91 RPLLPGVREALALCK---AQGLKIGLASASPLHMLEAVLTM-------FDLRDYFDALASAEKLPYSKPHPEVYLNCAAK 160 (222)
T ss_pred CCCCCCHHHHHHHHH---HCCCeEEEEeCCcHHHHHHHHHh-------CcchhcccEEEEcccCCCCCCCHHHHHHHHHH
Confidence 467799999888886 56799999999999999999998 4455667788887542 12234444443
Q ss_pred CCCCCcEEEEEcCCcccCCC
Q 002166 335 GTCHPKMALVIDDRLKVWDD 354 (957)
Q Consensus 335 g~~~~~mvVIIDDR~dVW~~ 354 (957)
....++-+++|+|+..=...
T Consensus 161 ~~~~~~~~~~igDs~~Di~a 180 (222)
T PRK10826 161 LGVDPLTCVALEDSFNGMIA 180 (222)
T ss_pred cCCCHHHeEEEcCChhhHHH
Confidence 33567889999999754443
No 63
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.20 E-value=0.00064 Score=61.48 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=32.9
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhC
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLD 302 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLD 302 (957)
..+++|++.++++.|+ ..-+.++|+|++.+.++..+++.+.
T Consensus 22 ~~~~~~~~~~~l~~l~---~~g~~i~ivS~~~~~~~~~~~~~~~ 62 (139)
T cd01427 22 ELELYPGVKEALKELK---EKGIKLALATNKSRREVLELLEELG 62 (139)
T ss_pred cCCcCcCHHHHHHHHH---HCCCeEEEEeCchHHHHHHHHHHcC
Confidence 3466789999666665 3458999999999999999998853
No 64
>PLN02954 phosphoserine phosphatase
Probab=97.20 E-value=0.002 Score=66.04 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=38.1
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCC-Cccc
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPES-NLIN 309 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g-~lFg 309 (957)
.+++||+.+++.+|+ ..-+.++|.|.|.+.++..+++.+.=+. .+|.
T Consensus 83 ~~l~pg~~e~l~~l~---~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~ 130 (224)
T PLN02954 83 PRLSPGIPELVKKLR---ARGTDVYLVSGGFRQMIAPVAAILGIPPENIFA 130 (224)
T ss_pred CCCCccHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHhCCChhhEEE
Confidence 357899999999997 5678999999999999999999865332 3554
No 65
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=97.18 E-value=0.0031 Score=62.92 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=54.1
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCC------------c--
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGS------------R-- 325 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg~------------~-- 325 (957)
++++||+.+++++|+ ++-+.++|.|+|.+.++..+++.+.-+ .+|. ..+++.+.+. .
T Consensus 79 ~~~~~g~~e~l~~l~---~~g~~~~IvS~~~~~~~~~~l~~~g~~-~~~~-----~~~~~~~~g~~~p~~~~~~~~~~k~ 149 (201)
T TIGR01491 79 ISLRDYAEELVRWLK---EKGLKTAIVSGGIMCLAKKVAEKLNPD-YVYS-----NELVFDEKGFIQPDGIVRVTFDNKG 149 (201)
T ss_pred CCCCccHHHHHHHHH---HCCCEEEEEeCCcHHHHHHHHHHhCCC-eEEE-----EEEEEcCCCeEecceeeEEccccHH
Confidence 468999999888886 567999999999999999999987643 3455 4444432221 1
Q ss_pred cchhhhccCCCCCCcEEEEEcCCc
Q 002166 326 KSLFNVFQDGTCHPKMALVIDDRL 349 (957)
Q Consensus 326 KsL~~lfp~g~~~~~mvVIIDDR~ 349 (957)
+.+.++.......++-+++|+|+.
T Consensus 150 ~~~~~~~~~~~~~~~~~i~iGDs~ 173 (201)
T TIGR01491 150 EAVERLKRELNPSLTETVAVGDSK 173 (201)
T ss_pred HHHHHHHHHhCCCHHHEEEEcCCH
Confidence 123333221124456688888884
No 66
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.17 E-value=0.0025 Score=64.80 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=55.8
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhcc
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~K----sL~~lfp 333 (957)
.++++||+.+++..|+ ...+.+.|+|++.+.++..+++.++= ..+++.+++.++. ..| .+..++.
T Consensus 91 ~~~~~~g~~~~l~~l~---~~g~~~~i~S~~~~~~~~~~l~~~~l-------~~~f~~~~~~~~~~~~kp~~~~~~~~~~ 160 (226)
T PRK13222 91 GSRLYPGVKETLAALK---AAGYPLAVVTNKPTPFVAPLLEALGI-------ADYFSVVIGGDSLPNKKPDPAPLLLACE 160 (226)
T ss_pred cCccCCCHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHcCC-------ccCccEEEcCCCCCCCCcChHHHHHHHH
Confidence 3578899999777776 45799999999999999999988642 2344577776432 122 1333332
Q ss_pred CCCCCCcEEEEEcCCc
Q 002166 334 DGTCHPKMALVIDDRL 349 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR~ 349 (957)
.....++-+++|+|+.
T Consensus 161 ~~~~~~~~~i~igD~~ 176 (226)
T PRK13222 161 KLGLDPEEMLFVGDSR 176 (226)
T ss_pred HcCCChhheEEECCCH
Confidence 2225678899999984
No 67
>PRK11587 putative phosphatase; Provisional
Probab=97.15 E-value=0.0013 Score=67.77 Aligned_cols=80 Identities=13% Similarity=-0.009 Sum_probs=52.2
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-----Cccchhhhcc
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----SRKSLFNVFQ 333 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-----~~KsL~~lfp 333 (957)
.+++.||+.+++.+|+ .+.|.+.|.|++.+.++..+++.+.= .+| .-|+|.++. +...+.....
T Consensus 81 ~~~~~pg~~e~L~~L~---~~g~~~~ivTn~~~~~~~~~l~~~~l--~~~------~~i~~~~~~~~~KP~p~~~~~~~~ 149 (218)
T PRK11587 81 GITALPGAIALLNHLN---KLGIPWAIVTSGSVPVASARHKAAGL--PAP------EVFVTAERVKRGKPEPDAYLLGAQ 149 (218)
T ss_pred CceeCcCHHHHHHHHH---HcCCcEEEEcCCCchHHHHHHHhcCC--CCc------cEEEEHHHhcCCCCCcHHHHHHHH
Confidence 4578999999888886 56799999999999988777665321 122 357776432 1112222222
Q ss_pred CCCCCCcEEEEEcCCc
Q 002166 334 DGTCHPKMALVIDDRL 349 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR~ 349 (957)
..+..++-+++|+|+.
T Consensus 150 ~~g~~p~~~l~igDs~ 165 (218)
T PRK11587 150 LLGLAPQECVVVEDAP 165 (218)
T ss_pred HcCCCcccEEEEecch
Confidence 1225678899999985
No 68
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.15 E-value=0.0019 Score=67.37 Aligned_cols=81 Identities=14% Similarity=-0.001 Sum_probs=56.0
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhcc
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~K----sL~~lfp 333 (957)
.+++.||+.++++.|+ +.-+-+.|.|++.+.++..+++.+ +...+|+.|++.++. ..| -+..+..
T Consensus 93 ~~~~~pg~~~~L~~L~---~~g~~l~i~Tn~~~~~~~~~l~~~-------~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~ 162 (229)
T PRK13226 93 QSQLFDGVEGMLQRLE---CAGCVWGIVTNKPEYLARLILPQL-------GWEQRCAVLIGGDTLAERKPHPLPLLVAAE 162 (229)
T ss_pred cCeeCCCHHHHHHHHH---HCCCeEEEECCCCHHHHHHHHHHc-------CchhcccEEEecCcCCCCCCCHHHHHHHHH
Confidence 4678999999888886 456899999999999999988874 333345677776432 111 1333332
Q ss_pred CCCCCCcEEEEEcCCc
Q 002166 334 DGTCHPKMALVIDDRL 349 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR~ 349 (957)
.....++-+++|+|+.
T Consensus 163 ~l~~~p~~~l~IGDs~ 178 (229)
T PRK13226 163 RIGVAPTDCVYVGDDE 178 (229)
T ss_pred HhCCChhhEEEeCCCH
Confidence 2225678899999985
No 69
>PLN02940 riboflavin kinase
Probab=97.14 E-value=0.00034 Score=79.15 Aligned_cols=80 Identities=19% Similarity=0.148 Sum_probs=56.7
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHH-hhCCCCCccccccccCeEEeccCC-Ccc----chhhhcc
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWR-LLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQ 333 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~r-lLDP~g~lFg~~~l~~RIisr~sg-~~K----sL~~lfp 333 (957)
+++.||+.+++++|+ +.-+.+.|.|++.+.++..+++ . ++..++|+.|+|.++. ..| -+..++.
T Consensus 92 ~~l~pGv~elL~~Lk---~~g~~l~IvTn~~~~~~~~~l~~~-------~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~ 161 (382)
T PLN02940 92 IKALPGANRLIKHLK---SHGVPMALASNSPRANIEAKISCH-------QGWKESFSVIVGGDEVEKGKPSPDIFLEAAK 161 (382)
T ss_pred CCCCcCHHHHHHHHH---HCCCcEEEEeCCcHHHHHHHHHhc-------cChHhhCCEEEehhhcCCCCCCHHHHHHHHH
Confidence 457799999888887 5679999999999999988775 4 4445566788887553 222 2333332
Q ss_pred CCCCCCcEEEEEcCCc
Q 002166 334 DGTCHPKMALVIDDRL 349 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR~ 349 (957)
.....++-+|+|+|+.
T Consensus 162 ~lgv~p~~~l~VGDs~ 177 (382)
T PLN02940 162 RLNVEPSNCLVIEDSL 177 (382)
T ss_pred HcCCChhHEEEEeCCH
Confidence 2225567899999986
No 70
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.10 E-value=0.0016 Score=65.64 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=51.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCccc----hhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~s-g~~Ks----L~~lfp~ 334 (957)
+++-||+.+++.+|+ .+.|.+.|+||+.+.+ ..+++. ++...+|+.|++.++ +..|. +..++..
T Consensus 104 ~~~~~g~~~~l~~L~---~~g~~~~i~Sn~~~~~-~~~l~~-------~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~ 172 (203)
T TIGR02252 104 WQVYPDAIKLLKDLR---ERGLILGVISNFDSRL-RGLLEA-------LGLLEYFDFVVTSYEVGAEKPDPKIFQEALER 172 (203)
T ss_pred ceeCcCHHHHHHHHH---HCCCEEEEEeCCchhH-HHHHHH-------CCcHHhcceEEeecccCCCCCCHHHHHHHHHH
Confidence 378899999888886 4568999999998865 555554 344455667776533 32221 2323222
Q ss_pred CCCCCcEEEEEcCCc
Q 002166 335 GTCHPKMALVIDDRL 349 (957)
Q Consensus 335 g~~~~~mvVIIDDR~ 349 (957)
.++.++-+|+|+|+.
T Consensus 173 ~~~~~~~~~~IgD~~ 187 (203)
T TIGR02252 173 AGISPEEALHIGDSL 187 (203)
T ss_pred cCCChhHEEEECCCc
Confidence 236778899999984
No 71
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.08 E-value=0.0033 Score=66.14 Aligned_cols=87 Identities=9% Similarity=0.021 Sum_probs=57.1
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~K----sL~~lfp~ 334 (957)
+++.||+.+++.+|+ ++-+.+.|.|++.+.++..+++.+.=.+ +| ++.|+|.++. ..| .+...+..
T Consensus 98 ~~~~pg~~e~L~~L~---~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f-----~d~ii~~~~~~~~KP~p~~~~~a~~~ 168 (253)
T TIGR01422 98 SSPIPGVIEVIAYLR---ARGIKIGSTTGYTREMMDVVAPEAALQG-YR-----PDYNVTTDDVPAGRPAPWMALKNAIE 168 (253)
T ss_pred CccCCCHHHHHHHHH---HCCCeEEEECCCcHHHHHHHHHHHHhcC-CC-----CceEEccccCCCCCCCHHHHHHHHHH
Confidence 567899999888887 4579999999999999999998854322 22 2688887542 111 22222221
Q ss_pred CCC-CCcEEEEEcCCc-ccCCCC
Q 002166 335 GTC-HPKMALVIDDRL-KVWDDK 355 (957)
Q Consensus 335 g~~-~~~mvVIIDDR~-dVW~~~ 355 (957)
..+ +++-+|+|+|+. |+-..+
T Consensus 169 l~~~~~~~~l~IGDs~~Di~aA~ 191 (253)
T TIGR01422 169 LGVYDVAACVKVGDTVPDIEEGR 191 (253)
T ss_pred cCCCCchheEEECCcHHHHHHHH
Confidence 123 367789999984 344333
No 72
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.05 E-value=0.0062 Score=63.40 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=58.2
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCc----cchhhhcc
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSR----KSLFNVFQ 333 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~s-g~~----KsL~~lfp 333 (957)
..++-||+.+++.-|+ ++-|.+.|+|+..+..+..+++. ++...+|.-|+|-++ ... ..|..+..
T Consensus 87 ~~~~~~gv~e~L~~L~---~~g~~l~i~T~k~~~~~~~~l~~-------~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~ 156 (220)
T COG0546 87 ESRLFPGVKELLAALK---SAGYKLGIVTNKPERELDILLKA-------LGLADYFDVIVGGDDVPPPKPDPEPLLLLLE 156 (220)
T ss_pred cCccCCCHHHHHHHHH---hCCCeEEEEeCCcHHHHHHHHHH-------hCCccccceEEcCCCCCCCCcCHHHHHHHHH
Confidence 3567799999888887 66799999999999999999998 666677778888322 222 23444433
Q ss_pred CCCCCCcEEEEEcCC-cccCCCC
Q 002166 334 DGTCHPKMALVIDDR-LKVWDDK 355 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR-~dVW~~~ 355 (957)
.....++-+|+|.|+ .|+=..+
T Consensus 157 ~~~~~~~~~l~VGDs~~Di~aA~ 179 (220)
T COG0546 157 KLGLDPEEALMVGDSLNDILAAK 179 (220)
T ss_pred HhCCChhheEEECCCHHHHHHHH
Confidence 322334456666665 4454334
No 73
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.00046 Score=75.90 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=62.5
Q ss_pred CCCCchHHHHHHHHhcCC-CeEEEEeeecC---CCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002166 703 STETPSGVLQDIAMKCGT-KVEFRPALVAS---TELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLAN 772 (957)
Q Consensus 703 ~~~n~KS~LQE~~QK~~~-~~~Y~~v~~~~---Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L~~ 772 (957)
....|...|-++|++.+. +++|+++.+.+ ..+.|.|.++-|.+.+|+|.|.|-|.||+.||.+||.++=.
T Consensus 230 ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~ 303 (333)
T KOG3769|consen 230 QLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYD 303 (333)
T ss_pred cccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHc
Confidence 556789999999999995 69999987654 57999999999999999999999999999999999998843
No 74
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.98 E-value=0.0037 Score=61.68 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=50.4
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCcc----chhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~s-g~~K----sL~~lfp~ 334 (957)
+++.||+.++++.|+ +..+.++|.|++.. +..+++. ++...+|+.+++.++ +..| .+..+...
T Consensus 86 ~~~~pg~~~~L~~L~---~~g~~~~i~s~~~~--~~~~l~~-------~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~ 153 (185)
T TIGR01990 86 ADVLPGIKNLLDDLK---KNNIKIALASASKN--APTVLEK-------LGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEG 153 (185)
T ss_pred cccCccHHHHHHHHH---HCCCeEEEEeCCcc--HHHHHHh-------cCcHhhCcEEEehhhcCCCCCChHHHHHHHHH
Confidence 367799999888886 45799999998753 5556655 344556678887643 2212 22222222
Q ss_pred CCCCCcEEEEEcCCc
Q 002166 335 GTCHPKMALVIDDRL 349 (957)
Q Consensus 335 g~~~~~mvVIIDDR~ 349 (957)
....++-+|+|+|+.
T Consensus 154 ~~~~~~~~v~vgD~~ 168 (185)
T TIGR01990 154 LGVSPSECIGIEDAQ 168 (185)
T ss_pred cCCCHHHeEEEecCH
Confidence 225677899999984
No 75
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0011 Score=73.12 Aligned_cols=75 Identities=23% Similarity=0.201 Sum_probs=64.1
Q ss_pred CCCChhHHHHHHhhhcCCceeeeecCCCCCCCCCC-ccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHHhhcc
Q 002166 835 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQK-DEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRSMF 910 (957)
Q Consensus 835 ~~~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~-keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL~s~~ 910 (957)
..-+|+.+|-+||+++|+.-+.... +.++|.-.. +.|+.-+--|.+.+|+|.|.|-++|+++||..||.+++...
T Consensus 230 ql~~P~~~L~~lckr~~l~epe~Rl-l~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~t 305 (333)
T KOG3769|consen 230 QLQWPRRLLSRLCKRRGLKEPESRL-LAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHT 305 (333)
T ss_pred cccchHHHHHHHHHHcCCCCchhHH-HHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCC
Confidence 4559999999999999999887765 444555444 67888888899999999999999999999999999998765
No 76
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=96.88 E-value=0.00087 Score=66.57 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=52.3
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Cccc----hhhhccCC
Q 002166 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQDG 335 (957)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~Ks----L~~lfp~g 335 (957)
++-|++ +++..|. +.+.+.|.|++.+.++..+++. ++...+|+.|+|.++. ..|. +..++..-
T Consensus 88 ~~~~~~-e~L~~L~----~~~~l~I~T~~~~~~~~~~l~~-------~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~ 155 (188)
T PRK10725 88 EPLPLI-EVVKAWH----GRRPMAVGTGSESAIAEALLAH-------LGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLM 155 (188)
T ss_pred CCccHH-HHHHHHH----hCCCEEEEcCCchHHHHHHHHh-------CCcHhHceEEEehhhccCCCCChHHHHHHHHHc
Confidence 445764 6555554 3479999999999999999998 5555566789998553 2222 44443322
Q ss_pred CCCCcEEEEEcCCc
Q 002166 336 TCHPKMALVIDDRL 349 (957)
Q Consensus 336 ~~~~~mvVIIDDR~ 349 (957)
.+.++-+|+|||+.
T Consensus 156 ~~~~~~~l~igDs~ 169 (188)
T PRK10725 156 GVQPTQCVVFEDAD 169 (188)
T ss_pred CCCHHHeEEEeccH
Confidence 35677889999984
No 77
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=96.83 E-value=0.0019 Score=73.95 Aligned_cols=71 Identities=24% Similarity=0.354 Sum_probs=57.6
Q ss_pred CChhHHHHHHhhhcCCc------eeeeecCCCCCCCCCCccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHHhh
Q 002166 837 MGSVSALKELCMTEGLG------VVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLRS 908 (957)
Q Consensus 837 ~NpVglLNELcqkeGL~------v~f~~~~~~~sGp~h~keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL~s 908 (957)
.+|+.-|+..|-..... .++|-+ ....|+.+.+.|.+.|.++|+.+|.|+|+|-|.|..+||+.||+.+..
T Consensus 427 ndpkskLqq~cl~~rys~~~epdip~y~V-~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 427 NDPKSKLQQCCLTLRYSLGGEPDIPLYKV-LGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred cCcHHHHHHHHHHHhcccCCCCCCceEEE-ecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHh
Confidence 37888898887533333 334443 234677889999999999999999999999999999999999999986
No 78
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.76 E-value=0.0015 Score=66.50 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=52.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEec-cCCCcc----chhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCV-KSGSRK----SLFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr-~sg~~K----sL~~lfp~ 334 (957)
++.-|++.+ +|+ +..++|.|+|-|||.+.++.+.++- .|...+|+-|++. +-|..| -...++..
T Consensus 98 ~~~~~~~~~---~L~-~l~~~~~l~ilTNg~~~~~~~~l~~-------~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~ 166 (229)
T COG1011 98 LPDYPEALE---ALK-ELGKKYKLGILTNGARPHQERKLRQ-------LGLLDYFDAVFISEDVGVAKPDPEIFEYALEK 166 (229)
T ss_pred CccChhHHH---HHH-HHHhhccEEEEeCCChHHHHHHHHH-------cCChhhhheEEEecccccCCCCcHHHHHHHHH
Confidence 455566666 665 4344499999999999999999997 3444455677666 334333 33333333
Q ss_pred CCCCCcEEEEEcCCc
Q 002166 335 GTCHPKMALVIDDRL 349 (957)
Q Consensus 335 g~~~~~mvVIIDDR~ 349 (957)
.+..++-++.|||+.
T Consensus 167 ~g~~p~~~l~VgD~~ 181 (229)
T COG1011 167 LGVPPEEALFVGDSL 181 (229)
T ss_pred cCCCcceEEEECCCh
Confidence 335688999999986
No 79
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=96.73 E-value=0.003 Score=72.82 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=56.3
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCC--cc--chhhhccC
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGS--RK--SLFNVFQD 334 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg~--~K--sL~~lfp~ 334 (957)
.+++.||+.+++.+|+ ++-+.+.|.|++.+.|+..+++. ++...+|+.|+|.++.. .| -+......
T Consensus 328 ~~~l~pG~~e~L~~Lk---~~g~~l~IvS~~~~~~~~~~l~~-------~~l~~~f~~i~~~d~v~~~~kP~~~~~al~~ 397 (459)
T PRK06698 328 KGALYPNVKEIFTYIK---ENNCSIYIASNGLTEYLRAIVSY-------YDLDQWVTETFSIEQINSLNKSDLVKSILNK 397 (459)
T ss_pred CCCcCCCHHHHHHHHH---HCCCeEEEEeCCchHHHHHHHHH-------CCcHhhcceeEecCCCCCCCCcHHHHHHHHh
Confidence 3578899999999997 56799999999999999999988 44455666888875431 11 12222211
Q ss_pred CCCCCcEEEEEcCCc
Q 002166 335 GTCHPKMALVIDDRL 349 (957)
Q Consensus 335 g~~~~~mvVIIDDR~ 349 (957)
..++-+|+|.|+.
T Consensus 398 --l~~~~~v~VGDs~ 410 (459)
T PRK06698 398 --YDIKEAAVVGDRL 410 (459)
T ss_pred --cCcceEEEEeCCH
Confidence 2345689998885
No 80
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.73 E-value=0.00071 Score=69.28 Aligned_cols=92 Identities=8% Similarity=-0.004 Sum_probs=57.0
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccC-eEEecc-CCCcc----chhhhc
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLD-RIVCVK-SGSRK----SLFNVF 332 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~-RIisr~-sg~~K----sL~~lf 332 (957)
.+++.||+.++++.| .+.+.|.||+.+.++..+++. ++...+|. -|+|.+ .+..| .+..++
T Consensus 86 ~~~~~~gv~~~L~~L------~~~~~ivTn~~~~~~~~~l~~-------~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~ 152 (221)
T PRK10563 86 ELEPIAGANALLESI------TVPMCVVSNGPVSKMQHSLGK-------TGMLHYFPDKLFSGYDIQRWKPDPALMFHAA 152 (221)
T ss_pred cCCcCCCHHHHHHHc------CCCEEEEeCCcHHHHHHHHHh-------cChHHhCcceEeeHHhcCCCCCChHHHHHHH
Confidence 356679999955544 289999999999999998877 44444553 566763 23222 233333
Q ss_pred cCCCCCCcEEEEEcCCcccCCCCCCCCeEEe
Q 002166 333 QDGTCHPKMALVIDDRLKVWDDKDQPRVHVV 363 (957)
Q Consensus 333 p~g~~~~~mvVIIDDR~dVW~~~~~~~v~vV 363 (957)
....+.++-+|+|+|+..=........+.+|
T Consensus 153 ~~~~~~p~~~l~igDs~~di~aA~~aG~~~i 183 (221)
T PRK10563 153 EAMNVNVENCILVDDSSAGAQSGIAAGMEVF 183 (221)
T ss_pred HHcCCCHHHeEEEeCcHhhHHHHHHCCCEEE
Confidence 2222567789999998654433323445443
No 81
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=96.70 E-value=0.0013 Score=75.87 Aligned_cols=70 Identities=23% Similarity=0.143 Sum_probs=52.3
Q ss_pred CCCChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHHh
Q 002166 835 KLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLR 907 (957)
Q Consensus 835 ~~~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL~ 907 (957)
..+..|..|.|++|..--..+.|+- ......+ --|.+.|.||+..||.|+|.|||.||..||+.+|..|-
T Consensus 373 ngks~vCiLhEy~q~~lk~~pvyef-~e~~n~s--tpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI 442 (650)
T KOG4334|consen 373 NGKSKVCILHEYAQQCLKSLPVYEF-AENDNNS--TPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI 442 (650)
T ss_pred CCceeeehHHHHHHHHhhhcceeeh-hhccCCC--CcccccccccccccccccccchHHHHHHHHHHHHHHhc
Confidence 3457899999999754433333432 0112222 34999999999999999999999999999999999873
No 82
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.58 E-value=0.0083 Score=62.12 Aligned_cols=39 Identities=10% Similarity=0.299 Sum_probs=34.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhh
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL 301 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlL 301 (957)
++++||+.+++.+|+ .+-+.+.|.|+|.+.|+..+++.+
T Consensus 73 ~~l~pG~~e~l~~l~---~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 73 AEIREGFHEFVQFVK---ENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CCcCcCHHHHHHHHH---HcCCeEEEECCCcHHHHHHHHHHh
Confidence 578999999888886 577999999999999999999874
No 83
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.57 E-value=0.011 Score=64.74 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=48.4
Q ss_pred CcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCccch--hhhccCCCCCCc
Q 002166 263 RPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSL--FNVFQDGTCHPK 340 (957)
Q Consensus 263 RPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg~~KsL--~~lfp~g~~~~~ 340 (957)
-||..+++.+|. ++-..++|.|+..+.+.....+.|.-.|--.- ..+.|+.+++...|.. ..|-. .-+
T Consensus 120 ipGA~e~L~~L~---~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~---~~d~lllr~~~~~K~~rr~~I~~----~y~ 189 (266)
T TIGR01533 120 VAGALDFLNYAN---SKGVKIFYVSNRSEKEKAATLKNLKRFGFPQA---DEEHLLLKKDKSSKESRRQKVQK----DYE 189 (266)
T ss_pred CccHHHHHHHHH---HCCCeEEEEeCCCcchHHHHHHHHHHcCcCCC---CcceEEeCCCCCCcHHHHHHHHh----cCC
Confidence 389999777776 56688999999887776655555543333110 1267888765433432 22222 246
Q ss_pred EEEEEcCC
Q 002166 341 MALVIDDR 348 (957)
Q Consensus 341 mvVIIDDR 348 (957)
.++.|+|+
T Consensus 190 Ivl~vGD~ 197 (266)
T TIGR01533 190 IVLLFGDN 197 (266)
T ss_pred EEEEECCC
Confidence 79999998
No 84
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=96.54 E-value=0.0043 Score=63.17 Aligned_cols=83 Identities=23% Similarity=0.158 Sum_probs=47.9
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCcc----chhhhcc
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQ 333 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~s-g~~K----sL~~lfp 333 (957)
.+++.|++.+++..|+ .+-|.++|+||+...+...+..++ . ++...+|+.|++.++ +..| -+..+..
T Consensus 92 ~~~~~~~~~~~L~~L~---~~g~~l~i~Sn~~~~~~~~~~~~~-~----~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~ 163 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLR---AKGFKTACITNNFPTDHSAEEALL-P----GDIMALFDAVVESCLEGLRKPDPRIYQLMLE 163 (211)
T ss_pred ccccChhHHHHHHHHH---HCCCeEEEEeCCCCccchhhhHhh-h----hhhHhhCCEEEEeeecCCCCCCHHHHHHHHH
Confidence 4678899999777776 456999999999876522222221 1 122234567776532 2222 2222222
Q ss_pred CCCCCCcEEEEEcCCc
Q 002166 334 DGTCHPKMALVIDDRL 349 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR~ 349 (957)
..+..++-+|+|||+.
T Consensus 164 ~~g~~~~~~l~i~D~~ 179 (211)
T TIGR02247 164 RLGVAPEECVFLDDLG 179 (211)
T ss_pred HcCCCHHHeEEEcCCH
Confidence 2125567777789974
No 85
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=96.50 E-value=0.015 Score=60.22 Aligned_cols=47 Identities=6% Similarity=0.222 Sum_probs=39.2
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg 309 (957)
+++|||+.+++.+|+ ..-+.++|.|.|.+.|+..+++.+.+...+++
T Consensus 69 ~~l~pg~~e~l~~l~---~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~ 115 (214)
T TIGR03333 69 AEIREGFREFVAFIN---EHGIPFYVISGGMDFFVYPLLEGIVEKDRIYC 115 (214)
T ss_pred CcccccHHHHHHHHH---HCCCeEEEECCCcHHHHHHHHHhhCCcccEEe
Confidence 578999999888886 56799999999999999999998765444444
No 86
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=96.33 E-value=0.024 Score=57.32 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=35.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg 309 (957)
+++.||+.+++.+|+ +. +.+.|.|++.+.++..+++.++=. .+|.
T Consensus 67 ~~~~pg~~e~L~~L~---~~-~~~~IvS~~~~~~~~~~l~~~gl~-~~f~ 111 (205)
T PRK13582 67 LDPLPGAVEFLDWLR---ER-FQVVILSDTFYEFAGPLMRQLGWP-TLFC 111 (205)
T ss_pred CCCCCCHHHHHHHHH---hc-CCEEEEeCCcHHHHHHHHHHcCCc-hhhc
Confidence 356799999888886 44 899999999999999998886533 3454
No 87
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=96.18 E-value=0.012 Score=63.38 Aligned_cols=72 Identities=8% Similarity=0.020 Sum_probs=45.4
Q ss_pred cChHHHHHHHhhhccccEEEEEEeCC----cHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc-chhhhccCCCC
Q 002166 264 PAWEDLRSYLTARGRKRFEVYVCTMA----ERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK-SLFNVFQDGTC 337 (957)
Q Consensus 264 Pgv~eLr~FL~a~~sk~FEl~VyTmG----tR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~K-sL~~lfp~g~~ 337 (957)
|++.+|+.+|. .+-+.++|+|+. .+.++..+++.+ +..+.+.-|++.++. ..| .-...+.
T Consensus 117 ~~a~elL~~l~---~~G~~i~iVTnr~~~k~~~~a~~ll~~l-------Gi~~~f~~i~~~d~~~~~Kp~~~~~l~---- 182 (237)
T TIGR01672 117 EVARQLIDMHQ---RRGDAIFFVTGRTPGKTDTVSKTLAKNF-------HIPAMNPVIFAGDKPGQYQYTKTQWIQ---- 182 (237)
T ss_pred hHHHHHHHHHH---HCCCEEEEEeCCCCCcCHHHHHHHHHHh-------CCchheeEEECCCCCCCCCCCHHHHHH----
Confidence 45999777776 677999999998 677999999874 333444456665442 111 1112222
Q ss_pred CCcEEEEEcCCc
Q 002166 338 HPKMALVIDDRL 349 (957)
Q Consensus 338 ~~~mvVIIDDR~ 349 (957)
....++.|.|+.
T Consensus 183 ~~~i~i~vGDs~ 194 (237)
T TIGR01672 183 DKNIRIHYGDSD 194 (237)
T ss_pred hCCCeEEEeCCH
Confidence 234567787774
No 88
>PHA02597 30.2 hypothetical protein; Provisional
Probab=96.13 E-value=0.0061 Score=61.52 Aligned_cols=83 Identities=10% Similarity=0.099 Sum_probs=50.1
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCcc--chhhhccCCC
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRK--SLFNVFQDGT 336 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg~~K--sL~~lfp~g~ 336 (957)
.+++.||+.+++..|+ +.|.+++.|+++......+.+.+.-. .+|. .+|+.|++.++...| -+..+...-
T Consensus 72 ~~~~~pG~~e~L~~L~----~~~~~~i~Tn~~~~~~~~~~~~~~l~-~~f~--~~f~~i~~~~~~~~kp~~~~~a~~~~- 143 (197)
T PHA02597 72 YLSAYDDALDVINKLK----EDYDFVAVTALGDSIDALLNRQFNLN-ALFP--GAFSEVLMCGHDESKEKLFIKAKEKY- 143 (197)
T ss_pred hccCCCCHHHHHHHHH----hcCCEEEEeCCccchhHHHHhhCCHH-HhCC--CcccEEEEeccCcccHHHHHHHHHHh-
Confidence 3567899999777775 23668888998876655555555322 4443 244577776554222 222222221
Q ss_pred CCCcEEEEEcCCcc
Q 002166 337 CHPKMALVIDDRLK 350 (957)
Q Consensus 337 ~~~~mvVIIDDR~d 350 (957)
+++-+|+|||+..
T Consensus 144 -~~~~~v~vgDs~~ 156 (197)
T PHA02597 144 -GDRVVCFVDDLAH 156 (197)
T ss_pred -CCCcEEEeCCCHH
Confidence 1567999999863
No 89
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=96.00 E-value=0.013 Score=65.14 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=39.6
Q ss_pred eeC-cChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEecc
Q 002166 261 RLR-PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK 321 (957)
Q Consensus 261 KLR-Pgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~ 321 (957)
++| |++.|++..|+ ++.+-+.|+|.|.|.+|.++++.++ ...+|+-|+|-+
T Consensus 145 ~irdPgV~EaL~~Lk---ekGikLaIaTS~~Re~v~~~L~~lG-------Ld~YFdvIIs~G 196 (301)
T TIGR01684 145 RIRDPRIYDSLTELK---KRGCILVLWSYGDRDHVVESMRKVK-------LDRYFDIIISGG 196 (301)
T ss_pred ccCCHHHHHHHHHHH---HCCCEEEEEECCCHHHHHHHHHHcC-------CCcccCEEEECC
Confidence 345 89999777776 5678999999999999999999844 444445787754
No 90
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=95.86 E-value=0.026 Score=57.50 Aligned_cols=82 Identities=22% Similarity=0.180 Sum_probs=50.6
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCccc----hhhhcc
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQ 333 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~s-g~~Ks----L~~lfp 333 (957)
+.++.||+.++++.|+ ++-|.++|.||+.+.....+... +.+...+|+.|++-++ +..|. +..+..
T Consensus 82 ~~~~~~g~~e~L~~l~---~~g~~~~i~Sn~~~~~~~~~~~~------~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~ 152 (199)
T PRK09456 82 FVALRPEVIAIMHKLR---EQGHRVVVLSNTNRLHTTFWPEE------YPEVRAAADHIYLSQDLGMRKPEARIYQHVLQ 152 (199)
T ss_pred HhccCHHHHHHHHHHH---hCCCcEEEEcCCchhhHHHHHhh------chhHHHhcCEEEEecccCCCCCCHHHHHHHHH
Confidence 4567899999777776 45699999999998876543322 1122334567776533 22221 222222
Q ss_pred CCCCCCcEEEEEcCCc
Q 002166 334 DGTCHPKMALVIDDRL 349 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR~ 349 (957)
.....++-+++|||+.
T Consensus 153 ~~~~~p~~~l~vgD~~ 168 (199)
T PRK09456 153 AEGFSAADAVFFDDNA 168 (199)
T ss_pred HcCCChhHeEEeCCCH
Confidence 2225778899999985
No 91
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=95.67 E-value=0.044 Score=61.33 Aligned_cols=41 Identities=17% Similarity=0.112 Sum_probs=34.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDP 303 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP 303 (957)
++++||+.+|+..|+ +.-|.+.|+|.|...+++.+.+.|+=
T Consensus 180 l~l~pGa~elL~~Lk---~~G~~~aIvSgg~~~~~~~l~~~Lgl 220 (322)
T PRK11133 180 LPLMPGLTELVLKLQ---ALGWKVAIASGGFTYFADYLRDKLRL 220 (322)
T ss_pred CCCChhHHHHHHHHH---HcCCEEEEEECCcchhHHHHHHHcCC
Confidence 457899999888887 56789999999999999998887653
No 92
>COG4996 Predicted phosphatase [General function prediction only]
Probab=95.66 E-value=0.024 Score=56.86 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=64.2
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-CccchhhhccC---
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKSLFNVFQD--- 334 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~KsL~~lfp~--- 334 (957)
-|+|+|.+.+++.+++ +.-|-+-..|=+-.+-|.++++.||-. .||. =++--.-. .-+-|..++..
T Consensus 39 ev~L~~~v~~~l~war---nsG~i~~~~sWN~~~kA~~aLral~~~-~yFh------y~ViePhP~K~~ML~~llr~i~~ 108 (164)
T COG4996 39 EVHLFPDVKETLKWAR---NSGYILGLASWNFEDKAIKALRALDLL-QYFH------YIVIEPHPYKFLMLSQLLREINT 108 (164)
T ss_pred EEEEcHHHHHHHHHHH---hCCcEEEEeecCchHHHHHHHHHhchh-hhEE------EEEecCCChhHHHHHHHHHHHHH
Confidence 5789999999666665 677899999999999999999997765 3455 33322111 22345544431
Q ss_pred ---CCCCCcEEEEEcCCc----ccCCCCCCCCeEEec
Q 002166 335 ---GTCHPKMALVIDDRL----KVWDDKDQPRVHVVP 364 (957)
Q Consensus 335 ---g~~~~~mvVIIDDR~----dVW~~~~~~~v~vV~ 364 (957)
--..|+-+|.+|||. ++|+.- .+|..++
T Consensus 109 er~~~ikP~~Ivy~DDR~iH~~~Iwe~~--G~V~~~~ 143 (164)
T COG4996 109 ERNQKIKPSEIVYLDDRRIHFGNIWEYL--GNVKCLE 143 (164)
T ss_pred hhccccCcceEEEEecccccHHHHHHhc--CCeeeeE
Confidence 113578999999996 578776 5665443
No 93
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=95.49 E-value=0.044 Score=57.24 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=35.3
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002166 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (957)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg 309 (957)
+++||+.+++.+|+ + .+.+.|.|.|.+.|+..+++.|.=+ .+|.
T Consensus 68 ~l~pga~ell~~lk-~---~~~~~IVS~~~~~~~~~il~~lgi~-~~~a 111 (203)
T TIGR02137 68 KPLEGAVEFVDWLR-E---RFQVVILSDTFYEFSQPLMRQLGFP-TLLC 111 (203)
T ss_pred CCCccHHHHHHHHH-h---CCeEEEEeCChHHHHHHHHHHcCCc-hhhc
Confidence 56899999777775 2 3699999999999999999997644 3455
No 94
>PRK08238 hypothetical protein; Validated
Probab=95.37 E-value=0.071 Score=62.78 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=53.2
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Cc----c--chhhhcc
Q 002166 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SR----K--SLFNVFQ 333 (957)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~----K--sL~~lfp 333 (957)
.++|++.++.+.++ ++-+.+.|.|++.+.|++.+++.+. +|+.|++-++. +. | .|...++
T Consensus 72 p~~pga~e~L~~lk---~~G~~v~LaTas~~~~a~~i~~~lG----------lFd~Vigsd~~~~~kg~~K~~~l~~~l~ 138 (479)
T PRK08238 72 PYNEEVLDYLRAER---AAGRKLVLATASDERLAQAVAAHLG----------LFDGVFASDGTTNLKGAAKAAALVEAFG 138 (479)
T ss_pred CCChhHHHHHHHHH---HCCCEEEEEeCCCHHHHHHHHHHcC----------CCCEEEeCCCccccCCchHHHHHHHHhC
Confidence 47789999555554 6779999999999999999999962 24688877543 11 2 2333343
Q ss_pred CCCCCCcEEEEEcCCc---ccCCCCC
Q 002166 334 DGTCHPKMALVIDDRL---KVWDDKD 356 (957)
Q Consensus 334 ~g~~~~~mvVIIDDR~---dVW~~~~ 356 (957)
++.++.+.|+. .+|...+
T Consensus 139 -----~~~~~yvGDS~~Dlp~~~~A~ 159 (479)
T PRK08238 139 -----ERGFDYAGNSAADLPVWAAAR 159 (479)
T ss_pred -----ccCeeEecCCHHHHHHHHhCC
Confidence 23345567776 4787774
No 95
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.36 E-value=0.064 Score=56.63 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=57.3
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCcc---cccc--ccCeEEec---cCCCccchhhh
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLI---NTKE--LLDRIVCV---KSGSRKSLFNV 331 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lF---g~~~--l~~RIisr---~sg~~KsL~~l 331 (957)
++++|+.++|..+|+ +.-+.+.|.|-|-..|+..|++.|.-+..+= ...+ +..+|+.. ..+..+.|.++
T Consensus 76 ~~l~~ga~elv~~lk---~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~ 152 (212)
T COG0560 76 LRLTPGAEELVAALK---AAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALREL 152 (212)
T ss_pred CcCCccHHHHHHHHH---HCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHH
Confidence 788999999999998 7789999999999999999999987643210 0000 11344322 22334556666
Q ss_pred ccCCCCCCcEEEEEcCC
Q 002166 332 FQDGTCHPKMALVIDDR 348 (957)
Q Consensus 332 fp~g~~~~~mvVIIDDR 348 (957)
+..-....+-++-+-|.
T Consensus 153 ~~~~g~~~~~~~a~gDs 169 (212)
T COG0560 153 AAELGIPLEETVAYGDS 169 (212)
T ss_pred HHHcCCCHHHeEEEcCc
Confidence 65322445567777775
No 96
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=95.18 E-value=0.023 Score=59.86 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=50.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCccc----hhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~s-g~~Ks----L~~lfp~ 334 (957)
+++-||+.+++..|+ +.|-+.|.|+|+... ..++...+|+.|++-++ +..|- +..++..
T Consensus 112 ~~~~~gv~~~L~~L~----~~~~l~i~Tn~~~~~------------~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~ 175 (238)
T PRK10748 112 IDVPQATHDTLKQLA----KKWPLVAITNGNAQP------------ELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEK 175 (238)
T ss_pred CCCCccHHHHHHHHH----cCCCEEEEECCCchH------------HHCCcHHhhceeEecccCCcCCCcHHHHHHHHHH
Confidence 456689999666664 348999999998751 23566677778887643 22222 2222222
Q ss_pred CCCCCcEEEEEcCC--cccCCCC
Q 002166 335 GTCHPKMALVIDDR--LKVWDDK 355 (957)
Q Consensus 335 g~~~~~mvVIIDDR--~dVW~~~ 355 (957)
..+.++-+|+|.|+ .||-..+
T Consensus 176 ~~~~~~~~~~VGD~~~~Di~~A~ 198 (238)
T PRK10748 176 LNVPIGEILHVGDDLTTDVAGAI 198 (238)
T ss_pred cCCChhHEEEEcCCcHHHHHHHH
Confidence 22567789999887 5786554
No 97
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.05 E-value=0.077 Score=67.80 Aligned_cols=79 Identities=19% Similarity=0.102 Sum_probs=54.0
Q ss_pred eCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Cccc----hhhhccCCC
Q 002166 262 LRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRKS----LFNVFQDGT 336 (957)
Q Consensus 262 LRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~Ks----L~~lfp~g~ 336 (957)
+-||+.+|+++|+ ++-|.+.|.|++.+.++..+++-++=.. .+|+.|++.++. ..|. +..+.....
T Consensus 162 ~~pG~~elL~~Lk---~~G~~l~IvSn~~~~~~~~~L~~~gl~~------~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~lg 232 (1057)
T PLN02919 162 GFPGALELITQCK---NKGLKVAVASSADRIKVDANLAAAGLPL------SMFDAIVSADAFENLKPAPDIFLAAAKILG 232 (1057)
T ss_pred cCccHHHHHHHHH---hCCCeEEEEeCCcHHHHHHHHHHcCCCh------hHCCEEEECcccccCCCCHHHHHHHHHHcC
Confidence 5699999999987 5679999999999999999988743222 344688887543 2221 222222112
Q ss_pred CCCcEEEEEcCCc
Q 002166 337 CHPKMALVIDDRL 349 (957)
Q Consensus 337 ~~~~mvVIIDDR~ 349 (957)
..++-+|+|+|+.
T Consensus 233 v~p~e~v~IgDs~ 245 (1057)
T PLN02919 233 VPTSECVVIEDAL 245 (1057)
T ss_pred cCcccEEEEcCCH
Confidence 5677899999985
No 98
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.99 E-value=0.048 Score=67.49 Aligned_cols=198 Identities=14% Similarity=0.094 Sum_probs=115.5
Q ss_pred chHHHHHHHHhcCCCeEEEEeeec-CCCceEEEEEEECCEEE-EEeecCCHHHHHHHHHHHHHHHHHhhhhccccCCCCC
Q 002166 707 PSGVLQDIAMKCGTKVEFRPALVA-STELQFSIEAWFAGEKI-GEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDSGS 784 (957)
Q Consensus 707 ~KS~LQE~~QK~~~~~~Y~~v~~~-~Hdk~FtveV~I~G~~~-GeG~GkSKKEAEq~AAk~AL~~L~~~~~a~~~~~~~~ 784 (957)
-|+.|-.|+-|+.+.+.|.+-.+. .....|..+|.+.+-.| +.|.-.+||.|+..||+.=++.|.-.-+-..+..+.+
T Consensus 3 ~k~fly~~~~k~~~~p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~~ 82 (1282)
T KOG0921|consen 3 VKEFLYAWLGKNKYGPTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPTL 82 (1282)
T ss_pred HHHHHHHHHhhhccCcceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCccc
Confidence 478899999999988999975443 34568999999888654 4555566999999999999988863222111111111
Q ss_pred CC---CCCCCCCCccc-ccccCcCCCCCCCCCCcC--cC---------------------------CCCCCCCcCCCccc
Q 002166 785 GH---GDGSRFSNANE-NCFMGEINSFGGQPLAKD--ES---------------------------LSSEPSKLVDPRLE 831 (957)
Q Consensus 785 ~~---~D~~~~p~~~e-N~f~~~~ns~~~~~~s~~--d~---------------------------~sse~srl~~~~l~ 831 (957)
+. .|++-.-+.++ ..|....--+.+++.+.+ ++ +-++.+ -.+..+.
T Consensus 83 ~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~-d~~~~ih 161 (1282)
T KOG0921|consen 83 TSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETV-DLNAEIH 161 (1282)
T ss_pred ccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhh-ccCcccc
Confidence 10 01110000000 000000000000010000 00 000100 0011111
Q ss_pred CCCCCCChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEE-----CCEEEeecccCCHHHHHHHHHHHHHHHH
Q 002166 832 GSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEI-----DGQVLGKGIGSTWDEAKMQAAEKALGSL 906 (957)
Q Consensus 832 ~s~~~~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~I-----gGkvyG~G~G~SKKeAKqqAAk~AL~sL 906 (957)
.--...|-+-.||++-|++.+..++... ..|+.|.++|.+...| .-++.+++.|++||.|...-|..-.+.|
T Consensus 162 g~wt~eN~K~~ln~~~q~~~~~~~y~~~---~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm 238 (1282)
T KOG0921|consen 162 GNWTMENAKKALNEYLQKMRIQDNYKYT---IVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQL 238 (1282)
T ss_pred CCCCcchhHHHHhHHHhhhhhcccccee---ecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHH
Confidence 1223448899999999999998877764 3789999999866544 5666778999999999887777777766
Q ss_pred hh
Q 002166 907 RS 908 (957)
Q Consensus 907 ~s 908 (957)
+-
T Consensus 239 ~h 240 (1282)
T KOG0921|consen 239 FH 240 (1282)
T ss_pred HH
Confidence 64
No 99
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=94.90 E-value=0.027 Score=59.18 Aligned_cols=76 Identities=16% Similarity=0.160 Sum_probs=51.8
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC---------Cccchhh
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG---------SRKSLFN 330 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg---------~~KsL~~ 330 (957)
+++.||+.+++..|+ ++..-+-|.|...|.-+..+++. .+...+|+=|++.++. ..+...+
T Consensus 85 ~~~~pGv~~~l~~L~---~~~i~~avaS~s~~~~~~~~L~~-------~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~ 154 (221)
T COG0637 85 LKPIPGVVELLEQLK---ARGIPLAVASSSPRRAAERVLAR-------LGLLDYFDVIVTADDVARGKPAPDIYLLAAER 154 (221)
T ss_pred CCCCccHHHHHHHHH---hcCCcEEEecCChHHHHHHHHHH-------ccChhhcchhccHHHHhcCCCCCHHHHHHHHH
Confidence 466799999777776 33388999999999999998877 3333444455554321 2344554
Q ss_pred hccCCCCCCcEEEEEcCCc
Q 002166 331 VFQDGTCHPKMALVIDDRL 349 (957)
Q Consensus 331 lfp~g~~~~~mvVIIDDR~ 349 (957)
+- ..+.-||+|+|..
T Consensus 155 Lg----v~P~~CvviEDs~ 169 (221)
T COG0637 155 LG----VDPEECVVVEDSP 169 (221)
T ss_pred cC----CChHHeEEEecch
Confidence 42 3578899999974
No 100
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=94.74 E-value=0.051 Score=60.10 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=50.2
Q ss_pred CcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCccchhhhccCCCCCCcEE
Q 002166 263 RPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMA 342 (957)
Q Consensus 263 RPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg~~KsL~~lfp~g~~~~~mv 342 (957)
.|++.+++..|+ ..-+-+.|||+..+..|.++++. ....|+..+.|.-+.+........+..+.......+.-+
T Consensus 33 ~~~~~e~L~~L~---~~Gi~lai~S~n~~~~a~~~l~~---~~~~~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~ 106 (320)
T TIGR01686 33 HKTLQEKIKTLK---KQGFLLALASKNDEDDAKKVFER---RKDFILQAEDFDARSINWGPKSESLRKIAKKLNLGTDSF 106 (320)
T ss_pred HHHHHHHHHHHH---hCCCEEEEEcCCCHHHHHHHHHh---CccccCcHHHeeEEEEecCchHHHHHHHHHHhCCCcCcE
Confidence 478888666665 56789999999999999988875 112333333334443332223333444433222567889
Q ss_pred EEEcCCc
Q 002166 343 LVIDDRL 349 (957)
Q Consensus 343 VIIDDR~ 349 (957)
|+|||+.
T Consensus 107 vfidD~~ 113 (320)
T TIGR01686 107 LFIDDNP 113 (320)
T ss_pred EEECCCH
Confidence 9999964
No 101
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.55 E-value=0.044 Score=58.92 Aligned_cols=79 Identities=20% Similarity=0.332 Sum_probs=59.6
Q ss_pred eCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-----------Cccchhh
Q 002166 262 LRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-----------SRKSLFN 330 (957)
Q Consensus 262 LRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-----------~~KsL~~ 330 (957)
|-|-+ .||++|- .+.+++ .++||||-|..|.++++. +|.+++|+.|+|-+.. ..+..+.
T Consensus 99 LkPD~-~LRnlLL-~l~~r~-k~~FTNa~k~HA~r~Lk~-------LGieDcFegii~~e~~np~~~~~vcKP~~~afE~ 168 (244)
T KOG3109|consen 99 LKPDP-VLRNLLL-SLKKRR-KWIFTNAYKVHAIRILKK-------LGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEK 168 (244)
T ss_pred cCCCH-HHHHHHH-hCcccc-EEEecCCcHHHHHHHHHH-------hChHHhccceeEeeccCCCCCceeecCCHHHHHH
Confidence 44444 3577888 777777 999999999999999999 8999999999998532 2344555
Q ss_pred hccCCCC-CCcEEEEEcCCcc
Q 002166 331 VFQDGTC-HPKMALVIDDRLK 350 (957)
Q Consensus 331 lfp~g~~-~~~mvVIIDDR~d 350 (957)
++.-.+. +++-++++||+..
T Consensus 169 a~k~agi~~p~~t~FfDDS~~ 189 (244)
T KOG3109|consen 169 AMKVAGIDSPRNTYFFDDSER 189 (244)
T ss_pred HHHHhCCCCcCceEEEcCchh
Confidence 5543323 4889999999853
No 102
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=94.44 E-value=0.018 Score=58.11 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=37.4
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccc
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLIN 309 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg 309 (957)
.+++|++.+++..|+ ++-+.++|.|.+.+.|+..+++.|.=+ .+|+
T Consensus 86 ~~~~~~~~~~l~~l~---~~g~~v~ivS~s~~~~v~~~~~~lg~~-~~~~ 131 (202)
T TIGR01490 86 SILYPEARDLIRWHK---AEGHTIVLVSASLTILVKPLARILGID-NAIG 131 (202)
T ss_pred HhccHHHHHHHHHHH---HCCCEEEEEeCCcHHHHHHHHHHcCCc-ceEe
Confidence 457899999777776 566899999999999999999987654 3566
No 103
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=94.37 E-value=0.23 Score=53.74 Aligned_cols=39 Identities=13% Similarity=0.359 Sum_probs=33.3
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 002166 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 300 (957)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rl 300 (957)
.+.||..++.+||. +....||++|-..|+--|-+.|++.
T Consensus 71 p~~pgm~~~l~~l~-~~~~~~~~~IiSDaNs~fI~~iL~~ 109 (234)
T PF06888_consen 71 PIDPGMKELLRFLA-KNQRGFDLIIISDANSFFIETILEH 109 (234)
T ss_pred CCCccHHHHHHHHH-hcCCCceEEEEeCCcHhHHHHHHHh
Confidence 34589999888885 4467899999999999999999988
No 104
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=94.34 E-value=0.14 Score=52.02 Aligned_cols=81 Identities=11% Similarity=0.068 Sum_probs=47.1
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHH---------HHHHHHHhhCCCCCccccccccCeEEeccCC-Cc----
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERD---------YALEMWRLLDPESNLINTKELLDRIVCVKSG-SR---- 325 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~---------YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~---- 325 (957)
..+-||+.+++..|. .+-|.+.|.|++... +...|.++|+--|..+ .-+++-+.. ..
T Consensus 41 ~~~~pgv~e~L~~Lk---~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~------~~ii~~~~~~~~KP~p 111 (166)
T TIGR01664 41 RFLYPEIPAKLQELD---DEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI------QVLAATHAGLYRKPMT 111 (166)
T ss_pred EEecCCHHHHHHHHH---HCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE------EEEEecCCCCCCCCcc
Confidence 335589999877776 678999999998874 3233334444333222 234433222 11
Q ss_pred cchhhhccCCC--CCCcEEEEEcCCc
Q 002166 326 KSLFNVFQDGT--CHPKMALVIDDRL 349 (957)
Q Consensus 326 KsL~~lfp~g~--~~~~mvVIIDDR~ 349 (957)
..+..+..... ++++-+++|+|+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 112 GMWEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred HHHHHHHHHcCCCCCchhcEEEECCC
Confidence 23333333222 5678899999985
No 105
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=94.27 E-value=0.038 Score=53.38 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=56.7
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCC-cHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCccchhhhccCCC--
Q 002166 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMA-ERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKSLFNVFQDGT-- 336 (957)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FEl~VyTmG-tR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~s-g~~KsL~~lfp~g~-- 336 (957)
++.||+.+++..|+ +.-|.+.|.|++ .+.|+..+++.+.+.+.+.+...+|+-+++-+. ...+.+..+....+
T Consensus 29 ~~~~gv~e~L~~Lk---~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~~~~pkp~~~~~a~~~lg~~ 105 (128)
T TIGR01681 29 VTIKEIRDKLQTLK---KNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDPLTIGYWLPKSPRLVEIALKLNGV 105 (128)
T ss_pred HHHHHHHHHHHHHH---HCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhhhhhcCCCcHHHHHHHHHHHhcCC
Confidence 56789999888886 567999999999 999999999987642222212344455555422 22222333222222
Q ss_pred CCCcEEEEEcCCc
Q 002166 337 CHPKMALVIDDRL 349 (957)
Q Consensus 337 ~~~~mvVIIDDR~ 349 (957)
+.++-+++|||+.
T Consensus 106 ~~p~~~l~igDs~ 118 (128)
T TIGR01681 106 LKPKSILFVDDRP 118 (128)
T ss_pred CCcceEEEECCCH
Confidence 5678999999985
No 106
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=94.12 E-value=0.076 Score=53.93 Aligned_cols=79 Identities=23% Similarity=0.288 Sum_probs=55.4
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCcc----chhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~s-g~~K----sL~~lfp~ 334 (957)
++++||+.+++..|+ +. |.+.|.|++.+.++..+++- ++...+|+.|++.++ +..| -+..++..
T Consensus 96 ~~~~~g~~~~L~~l~---~~-~~~~i~Sn~~~~~~~~~l~~-------~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~ 164 (224)
T TIGR02254 96 HQLLPGAFELMENLQ---QK-FRLYIVTNGVRETQYKRLRK-------SGLFPFFDDIFVSEDAGIQKPDKEIFNYALER 164 (224)
T ss_pred CeeCccHHHHHHHHH---hc-CcEEEEeCCchHHHHHHHHH-------CCcHhhcCEEEEcCccCCCCCCHHHHHHHHHH
Confidence 588999999777775 34 99999999999999998887 454556778888643 2111 12222221
Q ss_pred C-CCCCcEEEEEcCCc
Q 002166 335 G-TCHPKMALVIDDRL 349 (957)
Q Consensus 335 g-~~~~~mvVIIDDR~ 349 (957)
. ...++-+|+|+|+.
T Consensus 165 ~~~~~~~~~v~igD~~ 180 (224)
T TIGR02254 165 MPKFSKEEVLMIGDSL 180 (224)
T ss_pred hcCCCchheEEECCCc
Confidence 1 25678899999984
No 107
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=93.88 E-value=0.19 Score=54.36 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=31.8
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeC----CcHHHHHHHHHhh
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTM----AERDYALEMWRLL 301 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTm----GtR~YA~~I~rlL 301 (957)
+.++-||+.+|+.+|. ++-++|+|.|+ ..+.++..+++.+
T Consensus 112 ~a~p~~Ga~elL~~L~---~~G~~I~iVTnR~~~k~~~t~~~Llk~~ 155 (237)
T PRK11009 112 FSIPKEVARQLIDMHV---KRGDSIYFITGRTATKTETVSKTLADDF 155 (237)
T ss_pred cCcchHHHHHHHHHHH---HCCCeEEEEeCCCCcccHHHHHHHHHHc
Confidence 4556678999888876 67899999998 5677899888853
No 108
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=93.67 E-value=0.09 Score=55.16 Aligned_cols=80 Identities=18% Similarity=0.074 Sum_probs=56.3
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCccc----hhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~s-g~~Ks----L~~lfp~ 334 (957)
+++.||+.+++..|+ ++-|-++|.|++.+.++..+++. ++...+|+.|+|.++ +..|- +..+...
T Consensus 92 ~~~~~g~~e~L~~Lk---~~g~~~~i~Tn~~~~~~~~~l~~-------~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~ 161 (224)
T PRK14988 92 AVLREDTVPFLEALK---ASGKRRILLTNAHPHNLAVKLEH-------TGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEH 161 (224)
T ss_pred CCcCCCHHHHHHHHH---hCCCeEEEEeCcCHHHHHHHHHH-------CCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHH
Confidence 578899999888887 55789999999999999998877 344445667777643 22222 2222221
Q ss_pred CCCCCcEEEEEcCCc
Q 002166 335 GTCHPKMALVIDDRL 349 (957)
Q Consensus 335 g~~~~~mvVIIDDR~ 349 (957)
....++-+|+|||+.
T Consensus 162 ~~~~p~~~l~igDs~ 176 (224)
T PRK14988 162 TGLKAERTLFIDDSE 176 (224)
T ss_pred cCCChHHEEEEcCCH
Confidence 225678899999985
No 109
>PRK11590 hypothetical protein; Provisional
Probab=93.33 E-value=0.15 Score=52.86 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=32.8
Q ss_pred EeeCcChHHHH-HHHhhhccccEEEEEEeCCcHHHHHHHHHhhC
Q 002166 260 VRLRPAWEDLR-SYLTARGRKRFEVYVCTMAERDYALEMWRLLD 302 (957)
Q Consensus 260 vKLRPgv~eLr-~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLD 302 (957)
++++|++.+++ ..|+ +.-+.+.|.|+..+.|+..+++.|.
T Consensus 94 ~~~~pga~e~L~~~l~---~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLL---SSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHH---hCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 46689999965 4554 5689999999999999999998743
No 110
>PRK09449 dUMP phosphatase; Provisional
Probab=92.10 E-value=0.24 Score=50.84 Aligned_cols=84 Identities=13% Similarity=0.131 Sum_probs=56.2
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCcc----chhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~s-g~~K----sL~~lfp~ 334 (957)
+++.||+.+++..|+ +.|-+.|.||+.+.++..+++. ++...+|+.|++.++ +..| -+..++..
T Consensus 94 ~~~~~g~~~~L~~L~----~~~~~~i~Tn~~~~~~~~~l~~-------~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~ 162 (224)
T PRK09449 94 CTPLPGAVELLNALR----GKVKMGIITNGFTELQQVRLER-------TGLRDYFDLLVISEQVGVAKPDVAIFDYALEQ 162 (224)
T ss_pred CccCccHHHHHHHHH----hCCeEEEEeCCcHHHHHHHHHh-------CChHHHcCEEEEECccCCCCCCHHHHHHHHHH
Confidence 567899999777774 3499999999999999998877 455556678887644 2222 12222222
Q ss_pred CCC-CCcEEEEEcCCc--ccCCC
Q 002166 335 GTC-HPKMALVIDDRL--KVWDD 354 (957)
Q Consensus 335 g~~-~~~mvVIIDDR~--dVW~~ 354 (957)
.++ .++-+++|+|+. ||=..
T Consensus 163 ~~~~~~~~~~~vgD~~~~Di~~A 185 (224)
T PRK09449 163 MGNPDRSRVLMVGDNLHSDILGG 185 (224)
T ss_pred cCCCCcccEEEEcCCcHHHHHHH
Confidence 113 346799999984 56433
No 111
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=90.50 E-value=0.33 Score=45.00 Aligned_cols=68 Identities=21% Similarity=0.051 Sum_probs=36.5
Q ss_pred hHHHHHHhhhcCCceeeeecC-CCCCCCCCCccEEEEEEECC-----EEEeecccCCHHHHHHHHHHHHHHHHhhcc
Q 002166 840 VSALKELCMTEGLGVVFQQQP-PSSANSVQKDEVYAQVEIDG-----QVLGKGIGSTWDEAKMQAAEKALGSLRSMF 910 (957)
Q Consensus 840 VglLNELcqkeGL~v~f~~~~-~~~sGp~h~keF~~qV~IgG-----kvyG~G~G~SKKeAKqqAAk~AL~sL~s~~ 910 (957)
|++||+||+. |.-+.+... +.-.-......|.|+|..=. .+.|. .-.||+.||+.||-+|+..|+.+-
T Consensus 2 i~lL~~yC~~--Lp~d~~~~~~P~~~~~~~~~~~~c~v~LP~~~pi~~i~g~-~~~sk~~AK~sAAf~Ac~~L~~~g 75 (90)
T PF03368_consen 2 ISLLNRYCST--LPSDSFTNLKPEFEIEKIGSGFICTVILPINSPIRSIEGP-PMRSKKLAKRSAAFEACKKLHEAG 75 (90)
T ss_dssp HHHHHHHHTT--SSS-TT--SS-EEEEEE--G-EEEEEE--TT-SS--EEEE---SSHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhc--CCCCCCccCCceEEEEEcCCcEEEEEECCCCCCCCeEEcc-ccccHHHHHHHHHHHHHHHHHHcC
Confidence 7899999984 333211110 00000000114667666521 14444 678999999999999999999653
No 112
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=90.04 E-value=0.37 Score=47.62 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=51.3
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~K----sL~~lfp~ 334 (957)
+++.||+.+++++|+ +..|.+.|.|++ .++..+++. ++...+++-|++.++. ..| .+..+...
T Consensus 87 ~~~~~g~~~~l~~l~---~~g~~i~i~S~~--~~~~~~l~~-------~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~ 154 (185)
T TIGR02009 87 AEVLPGIENFLKRLK---KKGIAVGLGSSS--KNADRILAK-------LGLTDYFDAIVDADEVKEGKPHPETFLLAAEL 154 (185)
T ss_pred CCCCcCHHHHHHHHH---HcCCeEEEEeCc--hhHHHHHHH-------cChHHHCCEeeehhhCCCCCCChHHHHHHHHH
Confidence 578899999888886 457899999998 777777776 4444455677765432 111 12222222
Q ss_pred CCCCCcEEEEEcCCc
Q 002166 335 GTCHPKMALVIDDRL 349 (957)
Q Consensus 335 g~~~~~mvVIIDDR~ 349 (957)
....++-+|+|+|+.
T Consensus 155 ~~~~~~~~v~IgD~~ 169 (185)
T TIGR02009 155 LGVSPNECVVFEDAL 169 (185)
T ss_pred cCCCHHHeEEEeCcH
Confidence 124567788999984
No 113
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=89.12 E-value=0.6 Score=49.79 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=53.8
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCC--CCCccccccccCeEEeccCCCccchhhhccCCC
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDP--ESNLINTKELLDRIVCVKSGSRKSLFNVFQDGT 336 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP--~g~lFg~~~l~~RIisr~sg~~KsL~~lfp~g~ 336 (957)
..++.|++.++++.|+ ++-|.++|||+|++.+...+.+.++- -..||. .+++-+++.|.. ...+..++....
T Consensus 93 ~~~lypgv~e~L~~Lk---~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f~--~~fd~~~g~KP~-p~~y~~i~~~lg 166 (220)
T TIGR01691 93 TSHLYPDVPPALEAWL---QLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYFS--GYFDTTVGLKTE-AQSYVKIAGQLG 166 (220)
T ss_pred ccCcCcCHHHHHHHHH---HCCCEEEEEeCCCHHHHHHHHhhccccchhhhcc--eEEEeCcccCCC-HHHHHHHHHHhC
Confidence 3568899999777776 56799999999999999888876531 112343 222233333322 122333332222
Q ss_pred CCCcEEEEEcCCc
Q 002166 337 CHPKMALVIDDRL 349 (957)
Q Consensus 337 ~~~~mvVIIDDR~ 349 (957)
..++-+++|+|+.
T Consensus 167 v~p~e~lfVgDs~ 179 (220)
T TIGR01691 167 SPPREILFLSDII 179 (220)
T ss_pred cChhHEEEEeCCH
Confidence 6678899999985
No 114
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=88.92 E-value=0.75 Score=49.21 Aligned_cols=81 Identities=11% Similarity=0.056 Sum_probs=54.0
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCC-Ccc----chhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSG-SRK----SLFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg-~~K----sL~~lfp~ 334 (957)
+++-||+.+++.+|+ ++-|.+.|.|++.+.++..+++.+.=.+ +|- +.|+|.++. ..| -+..++..
T Consensus 100 ~~~~pg~~elL~~L~---~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~-----d~i~~~~~~~~~KP~p~~~~~a~~~ 170 (267)
T PRK13478 100 ATPIPGVLEVIAALR---ARGIKIGSTTGYTREMMDVVVPLAAAQG-YRP-----DHVVTTDDVPAGRPYPWMALKNAIE 170 (267)
T ss_pred CCCCCCHHHHHHHHH---HCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCc-----eEEEcCCcCCCCCCChHHHHHHHHH
Confidence 467799999999887 5679999999999999999988743222 222 577777542 222 12222221
Q ss_pred CCCC-CcEEEEEcCCc
Q 002166 335 GTCH-PKMALVIDDRL 349 (957)
Q Consensus 335 g~~~-~~mvVIIDDR~ 349 (957)
.... ++-+|+|+|+.
T Consensus 171 l~~~~~~e~l~IGDs~ 186 (267)
T PRK13478 171 LGVYDVAACVKVDDTV 186 (267)
T ss_pred cCCCCCcceEEEcCcH
Confidence 1133 47799999986
No 115
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=88.89 E-value=1.5 Score=45.54 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=46.5
Q ss_pred EEEeeCcChHHHHHHHhhhccccEEEEEEe-CCcHHHHHHHHHhhCCC---CCccccccccCeEEeccCC-Cccchhhhc
Q 002166 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCT-MAERDYALEMWRLLDPE---SNLINTKELLDRIVCVKSG-SRKSLFNVF 332 (957)
Q Consensus 258 ~~vKLRPgv~eLr~FL~a~~sk~FEl~VyT-mGtR~YA~~I~rlLDP~---g~lFg~~~l~~RIisr~sg-~~KsL~~lf 332 (957)
.-++|-|++.+++.-|+ ..-.+|-|.+ ..+-+.|.+++++|+=. +......++|+- +-.-.+ ..+.+.++.
T Consensus 42 ~~v~lypdv~~iL~~L~---~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~-~eI~~gsK~~Hf~~i~ 117 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELK---ERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDY-LEIYPGSKTTHFRRIH 117 (169)
T ss_dssp -EE---TTHHHHHHHHH---HCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECE-EEESSS-HHHHHHHHH
T ss_pred CEEEeCcCHHHHHHHHH---HCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcch-hheecCchHHHHHHHH
Confidence 35788899999888887 5889999999 67889999999998765 111111122222 111123 334455555
Q ss_pred cCCCCCCcEEEEEcCCc
Q 002166 333 QDGTCHPKMALVIDDRL 349 (957)
Q Consensus 333 p~g~~~~~mvVIIDDR~ 349 (957)
...+...+-++++||..
T Consensus 118 ~~tgI~y~eMlFFDDe~ 134 (169)
T PF12689_consen 118 RKTGIPYEEMLFFDDES 134 (169)
T ss_dssp HHH---GGGEEEEES-H
T ss_pred HhcCCChhHEEEecCch
Confidence 43335556789999964
No 116
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=87.48 E-value=1.2 Score=44.11 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=29.6
Q ss_pred cChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCC
Q 002166 264 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPE 304 (957)
Q Consensus 264 Pgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~ 304 (957)
|.+.+++..|+ +.-++++|.|.|.+.|+..+++.+.=+
T Consensus 92 ~~~~e~i~~~~---~~~~~v~IvS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 92 PDAMELIRELK---DNGIKVVIVSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp TTHHHHHHHHH---HTTSEEEEEEEEEHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHH---HCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 34448666655 668999999999999999999876533
No 117
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=87.03 E-value=0.94 Score=55.30 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=33.3
Q ss_pred cccCchHHHHHHHHhhhcccchhcchhhhhhccccccccCcCCCCCCCCCcccceeccc
Q 002166 377 NNAIPVLCVARNIACNVRGGFFKEFDEGLLQRIPEISYEDDVKDIPSPPDVSNYLVSED 435 (957)
Q Consensus 377 ~~~~p~L~~a~~vl~~Vh~~FF~~~De~l~~ri~ev~~e~~~~~~~~~pDv~n~l~~ed 435 (957)
...++.|...+++|.+||..||...+ +....+..+||+..|=+-.
T Consensus 394 ~~~D~~L~~~~kvl~~vH~~ff~~~~--------------~~~e~~~~~Dvr~~i~~~~ 438 (635)
T KOG0323|consen 394 SDEDGELANLLKVLKPVHKGFFAKYD--------------EVEETLESPDVRLLIPELR 438 (635)
T ss_pred cccchhHHHHhhhhcccchhhhhccc--------------cccccccCCChhhhhhhhh
Confidence 34456899999999999999999765 2244455788887764443
No 118
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=86.48 E-value=0.97 Score=49.53 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=58.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCcc----chhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRK----SLFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~s-g~~K----sL~~lfp~ 334 (957)
+++.||+.+++.+|+ .+.|.+.|.|++.+.++..+++.+.= -.+|. .+. +++.++ +..| -+..++..
T Consensus 143 ~~l~pGv~elL~~L~---~~g~~l~IvTn~~~~~~~~~l~~~~~-~~~~~---~~~-~v~~~~~~~~KP~p~~~~~a~~~ 214 (286)
T PLN02779 143 LPLRPGVLRLMDEAL---AAGIKVAVCSTSNEKAVSKIVNTLLG-PERAQ---GLD-VFAGDDVPKKKPDPDIYNLAAET 214 (286)
T ss_pred CCchhhHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHhcc-ccccC---ceE-EEeccccCCCCCCHHHHHHHHHH
Confidence 578899999888887 56799999999999999999886521 12333 111 333322 1112 22222222
Q ss_pred CCCCCcEEEEEcCCcccCCCCCCCCeEEe
Q 002166 335 GTCHPKMALVIDDRLKVWDDKDQPRVHVV 363 (957)
Q Consensus 335 g~~~~~mvVIIDDR~dVW~~~~~~~v~vV 363 (957)
....++-+++|+|+..=+.......+.+|
T Consensus 215 ~~~~p~~~l~IGDs~~Di~aA~~aG~~~i 243 (286)
T PLN02779 215 LGVDPSRCVVVEDSVIGLQAAKAAGMRCI 243 (286)
T ss_pred hCcChHHEEEEeCCHHhHHHHHHcCCEEE
Confidence 22567789999999754444333444433
No 119
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=86.35 E-value=1.2 Score=49.84 Aligned_cols=102 Identities=19% Similarity=0.260 Sum_probs=60.1
Q ss_pred cChHHHHHHHhhhccccE-EEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCccchhhhccCCCCCCcEE
Q 002166 264 PAWEDLRSYLTARGRKRF-EVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMA 342 (957)
Q Consensus 264 Pgv~eLr~FL~a~~sk~F-El~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg~~KsL~~lfp~g~~~~~mv 342 (957)
|.+.+ .|. +..+.+ -|+++.-|+++|+...++.+ +.+++|+=|||...... ....-
T Consensus 145 ~~v~~---sL~-~Lk~~g~vLvLWSyG~~eHV~~sl~~~-------~L~~~Fd~ii~~G~~~~------------~~~~~ 201 (297)
T PF05152_consen 145 PAVYD---SLR-ELKEQGCVLVLWSYGNREHVRHSLKEL-------KLEGYFDIIICGGNKAG------------EYNSR 201 (297)
T ss_pred hHHHH---HHH-HHHHcCCEEEEecCCCHHHHHHHHHHh-------CCccccEEEEeCCccCC------------cCCcc
Confidence 45555 444 444444 99999999999999999995 44456668999743211 11122
Q ss_pred EEEcCCcccCCCCCCCCeEEeccccCccCchhhhc--ccCchHHHHHHHHhhhcccchhcc
Q 002166 343 LVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEAN--NAIPVLCVARNIACNVRGGFFKEF 401 (957)
Q Consensus 343 VIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~--~~~p~L~~a~~vl~~Vh~~FF~~~ 401 (957)
+++|...+ .+.+.+ ||+....... -+.| -+++..|.+.-=.|||.+
T Consensus 202 ~~~d~~~~--------~~f~~~---~FylDv~~~~~LPKSP--rVVL~yL~k~gvny~Kti 249 (297)
T PF05152_consen 202 VIVDRQYK--------VIFVSK---PFYLDVTNVNNLPKSP--RVVLWYLRKKGVNYFKTI 249 (297)
T ss_pred ceeecccc--------eEEecc---ceEEeCCcCCCCCCCC--eehHHHHHHcCCceeeeE
Confidence 55665432 233333 3444433222 1223 557788888666888864
No 120
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=86.33 E-value=1.3 Score=44.82 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=51.7
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCC---------------cHHHHHHHHHhhCCCCCccccccccCeEEe----
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMA---------------ERDYALEMWRLLDPESNLINTKELLDRIVC---- 319 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG---------------tR~YA~~I~rlLDP~g~lFg~~~l~~RIis---- 319 (957)
.+++-||+.++++.|+ .+-|.++|.||. .+.|+..+++.++-. |. .-++|
T Consensus 27 ~~~~~pgv~e~L~~L~---~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd-----~ii~~~~~~ 95 (161)
T TIGR01261 27 KLRFEKGVIPALLKLK---KAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII---FD-----DVLICPHFP 95 (161)
T ss_pred HeeECCCHHHHHHHHH---HCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc---ee-----EEEECCCCC
Confidence 4567799999888886 567999999996 356777777765543 43 34455
Q ss_pred ccC-CCc----cchhhhccCCCCCCcEEEEEcCCc
Q 002166 320 VKS-GSR----KSLFNVFQDGTCHPKMALVIDDRL 349 (957)
Q Consensus 320 r~s-g~~----KsL~~lfp~g~~~~~mvVIIDDR~ 349 (957)
.++ +.. ..+..++....++++-+++|+|+.
T Consensus 96 ~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~ 130 (161)
T TIGR01261 96 DDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRE 130 (161)
T ss_pred CCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCH
Confidence 222 111 223444433336778899999983
No 121
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=85.30 E-value=1.8 Score=48.84 Aligned_cols=110 Identities=18% Similarity=0.250 Sum_probs=69.9
Q ss_pred EEeeC-cChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCccchhhhccCCCC
Q 002166 259 LVRLR-PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTC 337 (957)
Q Consensus 259 ~vKLR-Pgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg~~KsL~~lfp~g~~ 337 (957)
-+++| |++.+++..|+ ++-+.+.|+|+|.|.++..+++. ++...+|+-|+|-++...|.
T Consensus 145 ~v~irdp~V~EtL~eLk---ekGikLaIvTNg~Re~v~~~Le~-------lgL~~yFDvII~~g~i~~k~---------- 204 (303)
T PHA03398 145 PVRIRDPFVYDSLDELK---ERGCVLVLWSYGNREHVVHSLKE-------TKLEGYFDIIICGGRKAGEY---------- 204 (303)
T ss_pred ccccCChhHHHHHHHHH---HCCCEEEEEcCCChHHHHHHHHH-------cCCCccccEEEECCCccccc----------
Confidence 46788 99999777776 66799999999999999999998 44445555777765432222
Q ss_pred CCcEEEEEcCCcccCCCCCCCCeEEeccccCccCchhhhcccCchHHHHHHHHhhhcccchhcc
Q 002166 338 HPKMALVIDDRLKVWDDKDQPRVHVVPAFAPYYAPQAEANNAIPVLCVARNIACNVRGGFFKEF 401 (957)
Q Consensus 338 ~~~mvVIIDDR~dVW~~~~~~~v~vV~~Y~pf~~~q~e~~~~~p~L~~a~~vl~~Vh~~FF~~~ 401 (957)
+.-+++|++.+ .+.+.. ||+.......+-..+--+++..|.+.-=.|||.+
T Consensus 205 --~~~~~~d~~~~--------~~~~~~---~f~~d~~~~~~lPKSprvVl~yL~~~gvn~~Kti 255 (303)
T PHA03398 205 --SRRVIVDNKYK--------MVFVKK---PFYLDVTDVKNLPKSPRVVLWYLRKKGVNYFKTI 255 (303)
T ss_pred --ccceeecccce--------eEEecC---ceeEeCCcccCCCCCCeehHHHHHHcCcceeccE
Confidence 23456666532 233333 3444433221211122557888888666888864
No 122
>PF14954 LIX1: Limb expression 1
Probab=85.30 E-value=1.3 Score=47.71 Aligned_cols=80 Identities=20% Similarity=0.163 Sum_probs=52.8
Q ss_pred CCCChhHHHHHHhhhc-CCceeeeec--CCCCCCCCCCccEEEEEEE-CCEEEee-cccCCHHHHHHHHHHHHHH-HHhh
Q 002166 835 KLMGSVSALKELCMTE-GLGVVFQQQ--PPSSANSVQKDEVYAQVEI-DGQVLGK-GIGSTWDEAKMQAAEKALG-SLRS 908 (957)
Q Consensus 835 ~~~NpVglLNELcqke-GL~v~f~~~--~~~~sGp~h~keF~~qV~I-gGkvyG~-G~G~SKKeAKqqAAk~AL~-sL~s 908 (957)
..-|-|..|+|+=+.+ ..+..+... -+-++.|+..+-|+|-|++ ||--||. -...||.||++.|||.||- +++|
T Consensus 19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNSvfN 98 (252)
T PF14954_consen 19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNSVFN 98 (252)
T ss_pred ccchHHHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHHHHh
Confidence 3459999999987432 111111110 0112455566679999998 6766766 5788999999999999985 5555
Q ss_pred ccCCCCcccc
Q 002166 909 MFGQFPQKHQ 918 (957)
Q Consensus 909 ~~~~~~pkrq 918 (957)
.. |.|.
T Consensus 99 Eh----PsRr 104 (252)
T PF14954_consen 99 EH----PSRR 104 (252)
T ss_pred cC----Cccc
Confidence 54 6665
No 123
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=84.72 E-value=4.3 Score=37.77 Aligned_cols=62 Identities=23% Similarity=0.181 Sum_probs=40.9
Q ss_pred hHHHHHHHHhcC------CCeEEEEeeecCCCceEEEEEEECCE-----EEEEeecCCHHHHHHHHHHHHHHHHHhh
Q 002166 708 SGVLQDIAMKCG------TKVEFRPALVASTELQFSIEAWFAGE-----KIGEGIGRTRREAQRQAAEGSIKHLANV 773 (957)
Q Consensus 708 KS~LQE~~QK~~------~~~~Y~~v~~~~Hdk~FtveV~I~G~-----~~GeG~GkSKKEAEq~AAk~AL~~L~~~ 773 (957)
.+.|+.||++.. ..+.|.+....+ .|..+|.+=.. ..|. .-+|||.|++.||=.|+..|-+.
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~---~~~c~v~LP~~~pi~~i~g~-~~~sk~~AK~sAAf~Ac~~L~~~ 74 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS---GFICTVILPINSPIRSIEGP-PMRSKKLAKRSAAFEACKKLHEA 74 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G----EEEEEE--TT-SS--EEEE---SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC---cEEEEEECCCCCCCCeEEcc-ccccHHHHHHHHHHHHHHHHHHc
Confidence 578999998743 246787653322 77777765432 4555 67899999999999999999764
No 124
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=82.02 E-value=2.8 Score=44.34 Aligned_cols=30 Identities=30% Similarity=0.297 Sum_probs=20.6
Q ss_pred EEEeCccchhhhccccchHHHHHHHHhhhcc
Q 002166 145 IVFDLDETLIVANTMRSFEDRIEALLRKIST 175 (957)
Q Consensus 145 lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~~ 175 (957)
+++||||||+.... .--+..+++++++...
T Consensus 2 i~~DlDGTLl~~~~-~i~~~~~~~i~~l~~~ 31 (256)
T TIGR00099 2 IFIDLDGTLLNDDH-TISPSTKEALAKLREK 31 (256)
T ss_pred EEEeCCCCCCCCCC-ccCHHHHHHHHHHHHC
Confidence 78999999996532 1125667778777643
No 125
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=81.66 E-value=0.56 Score=46.27 Aligned_cols=73 Identities=16% Similarity=0.079 Sum_probs=49.5
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccC-CCccc----hhhhccC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKS-GSRKS----LFNVFQD 334 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~s-g~~Ks----L~~lfp~ 334 (957)
+++.||+.+ +|+ .+.|.||+.+.+...+++.+ +...+|+.|+|.++ +..|- ...++..
T Consensus 89 ~~~~~g~~~---~L~-------~~~i~Tn~~~~~~~~~l~~~-------~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~ 151 (175)
T TIGR01493 89 LPPWPDSAA---ALA-------RVAILSNASHWAFDQFAQQA-------GLPWYFDRAFSVDTVRAYKPDPVVYELVFDT 151 (175)
T ss_pred CCCCCchHH---HHH-------HHhhhhCCCHHHHHHHHHHC-------CCHHHHhhhccHhhcCCCCCCHHHHHHHHHH
Confidence 467899998 775 28899999999999998874 33444567888754 32221 1222221
Q ss_pred CCCCCcEEEEEcCCc
Q 002166 335 GTCHPKMALVIDDRL 349 (957)
Q Consensus 335 g~~~~~mvVIIDDR~ 349 (957)
.++.++-+++|+|+.
T Consensus 152 ~~~~p~~~l~vgD~~ 166 (175)
T TIGR01493 152 VGLPPDRVLMVAAHQ 166 (175)
T ss_pred HCCCHHHeEeEecCh
Confidence 226778899999983
No 126
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=80.43 E-value=4.2 Score=44.47 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=31.3
Q ss_pred cChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 002166 264 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 300 (957)
Q Consensus 264 Pgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rl 300 (957)
||.-+|.+|++ +.-. ||+-|..-++.-+-+++++.
T Consensus 87 Pgmv~lik~~a-k~g~-~eliIVSDaNsfFIe~~Lea 121 (256)
T KOG3120|consen 87 PGMVRLIKSAA-KLGC-FELIIVSDANSFFIEEILEA 121 (256)
T ss_pred ccHHHHHHHHH-hCCC-ceEEEEecCchhHHHHHHHH
Confidence 79999999998 5444 99999999999999999998
No 127
>PLN02811 hydrolase
Probab=80.30 E-value=2.5 Score=43.88 Aligned_cols=79 Identities=20% Similarity=0.130 Sum_probs=51.2
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHH-HHHhhCCCCCccccccccCeEEecc--CC-C--------ccc
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALE-MWRLLDPESNLINTKELLDRIVCVK--SG-S--------RKS 327 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~-I~rlLDP~g~lFg~~~l~~RIisr~--sg-~--------~Ks 327 (957)
+++.||+.+++++|+ ..-|.+.|-|++.+.+... +.+. .+...+|+.|+|.+ +- . .+.
T Consensus 77 ~~l~~gv~e~l~~L~---~~g~~~~i~S~~~~~~~~~~~~~~-------~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a 146 (220)
T PLN02811 77 SDLMPGAERLVRHLH---AKGIPIAIATGSHKRHFDLKTQRH-------GELFSLMHHVVTGDDPEVKQGKPAPDIFLAA 146 (220)
T ss_pred CCCCccHHHHHHHHH---HCCCcEEEEeCCchhhHHHHHccc-------HHHHhhCCEEEECChhhccCCCCCcHHHHHH
Confidence 467899999888887 4579999999999876643 2221 12223556888876 21 1 123
Q ss_pred hhhhccCCCCCCcEEEEEcCCc
Q 002166 328 LFNVFQDGTCHPKMALVIDDRL 349 (957)
Q Consensus 328 L~~lfp~g~~~~~mvVIIDDR~ 349 (957)
++++- .+...++-+|+|+|+.
T Consensus 147 ~~~~~-~~~~~~~~~v~IgDs~ 167 (220)
T PLN02811 147 ARRFE-DGPVDPGKVLVFEDAP 167 (220)
T ss_pred HHHhC-CCCCCccceEEEeccH
Confidence 34332 1125578899999986
No 128
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=80.12 E-value=3.1 Score=40.88 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=31.4
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCCcH---------------HHHHHHHHhhC
Q 002166 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAER---------------DYALEMWRLLD 302 (957)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR---------------~YA~~I~rlLD 302 (957)
++.||+.+++.+|+ .+-|.+.|.|++.+ .++..+++.++
T Consensus 27 ~~~~g~~~~l~~Lk---~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (147)
T TIGR01656 27 QLRPGAVPALLTLR---AAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLG 80 (147)
T ss_pred EEcCChHHHHHHHH---HCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCC
Confidence 67899999888887 78899999999985 56666666644
No 129
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=79.41 E-value=2 Score=46.50 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=58.7
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEecc--------CC-------
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK--------SG------- 323 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~--------sg------- 323 (957)
-..+.|++.+++..|. +.-+.+.|.|+....++..+++.|+-.+.+|. .|++.+ .+
T Consensus 185 ~~~~~~~~~~~l~~l~---~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~------~i~~~~~~~~~~~~~~~~kp~p~ 255 (300)
T PHA02530 185 EDKPNPMVVELVKMYK---AAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFD------DLIGRPPDMHFQREQGDKRPDDV 255 (300)
T ss_pred cCCCChhHHHHHHHHH---hCCCEEEEEeCCChhhHHHHHHHHHHcCCchh------hhhCCcchhhhcccCCCCCCcHH
Confidence 3467899999777775 55799999999999999999999988887776 344443 11
Q ss_pred -CccchhhhccCCCCCCcEEEEEcCCccc
Q 002166 324 -SRKSLFNVFQDGTCHPKMALVIDDRLKV 351 (957)
Q Consensus 324 -~~KsL~~lfp~g~~~~~mvVIIDDR~dV 351 (957)
..+.|.++.. ..++-+|.|||+..+
T Consensus 256 ~~~~~l~~~~~---~~~~~~~~vgD~~~d 281 (300)
T PHA02530 256 VKEEIFWEKIA---PKYDVLLAVDDRDQV 281 (300)
T ss_pred HHHHHHHHHhc---cCceEEEEEcCcHHH
Confidence 1233444421 146889999999765
No 130
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=78.65 E-value=1.7 Score=44.50 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=18.5
Q ss_pred EEEeCccchhhhccccch-HHHHHHHHhhhc
Q 002166 145 IVFDLDETLIVANTMRSF-EDRIEALLRKIS 174 (957)
Q Consensus 145 lV~DLDeTLi~A~t~~~~-e~ri~~l~~~~~ 174 (957)
|+|||||||+.. .+.+ +..+++|+++..
T Consensus 1 i~~DlDGTLl~~--~~~i~~~~~~al~~l~~ 29 (225)
T TIGR01482 1 IASDIDGTLTDP--NRAINESALEAIRKAES 29 (225)
T ss_pred CeEeccCccCCC--CcccCHHHHHHHHHHHH
Confidence 589999999954 3334 344566766553
No 131
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=78.09 E-value=17 Score=39.35 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=36.0
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCC
Q 002166 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPE 304 (957)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~ 304 (957)
+|-||++||-++|. .+--.+|+-.-|=|..|.-|...|+=+
T Consensus 88 ~lT~Gi~eLv~~L~---~~~~~v~liSGGF~~~i~~Va~~Lgi~ 128 (227)
T KOG1615|consen 88 TLTPGIRELVSRLH---ARGTQVYLISGGFRQLIEPVAEQLGIP 128 (227)
T ss_pred ccCCCHHHHHHHHH---HcCCeEEEEcCChHHHHHHHHHHhCCc
Confidence 45689999999998 566789999999999999999998844
No 132
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=77.87 E-value=1.8 Score=43.85 Aligned_cols=29 Identities=34% Similarity=0.320 Sum_probs=22.4
Q ss_pred EEEeCccchhhhccccchHHHHHHHHhhhc
Q 002166 145 IVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (957)
Q Consensus 145 lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (957)
|++||||||+..... --+..+++|++|..
T Consensus 1 i~~DlDGTLl~~~~~-i~~~~~~al~~l~~ 29 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGK-ISPETIEALKELQE 29 (254)
T ss_dssp EEEECCTTTCSTTSS-SCHHHHHHHHHHHH
T ss_pred cEEEECCceecCCCe-eCHHHHHHHHhhcc
Confidence 689999999986544 23677788888875
No 133
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=77.07 E-value=11 Score=37.53 Aligned_cols=86 Identities=15% Similarity=0.157 Sum_probs=60.4
Q ss_pred ccccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCCC----ccHHHHHHHHHhhhcccceEeec--CCCceeEEEE
Q 002166 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSS----DNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVA 108 (957)
Q Consensus 35 ~~~~~~~i~~~~~~~e~~~pl~~lh~i~~~~~~~~~~~~~~----~~~~l~~lh~~c~~e~ktav~~~--~~~~elhlva 108 (957)
+-.+.|+|.+|-+.+ ..|+ .|.+. ...|-. +... ...++..||..|.+.+|.||++. ..+.+-+|||
T Consensus 33 ~~~~~l~ilgF~~~~-~i~~---~~~~~--~s~~i~-P~~~~~~~s~~a~~aL~~am~~~~~~aiar~v~r~~~~p~l~a 105 (140)
T smart00559 33 KSEPGLELLGFKPLS-SLPP---YYFLR--PSYFLV-PDDKSVIGSTKAFSALVEALLETDKIAIARYTLRTKSNPRLVA 105 (140)
T ss_pred cCCCeEEEEeecChH-HCCH---hHccC--CcEEEe-eCCcccchhHHHHHHHHHHHHhcCCEEEEEEEEcCCCCCEEEE
Confidence 346899999999887 3443 24443 223322 3222 38899999999999999999998 5466799999
Q ss_pred eeecCCCCCccEEEEEeec
Q 002166 109 MYSRNNEKQYPCFWAFSVG 127 (957)
Q Consensus 109 ~~~~~~~~~~p~F~~~~~~ 127 (957)
+.....+....|||....+
T Consensus 106 L~P~~~~~~~~~l~~~~Lp 124 (140)
T smart00559 106 LRPYDEEDDGEGLVLVQLP 124 (140)
T ss_pred EEeeecccCCCcEEEEecC
Confidence 9887654444588766554
No 134
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=74.03 E-value=2.5 Score=45.39 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=19.1
Q ss_pred cChHHHHHHHhhhccccEEEEEEeCCcHH
Q 002166 264 PAWEDLRSYLTARGRKRFEVYVCTMAERD 292 (957)
Q Consensus 264 Pgv~eLr~FL~a~~sk~FEl~VyTmGtR~ 292 (957)
|+..+|..++. +.-++|++.|.=...
T Consensus 118 p~a~~l~~~~~---~~G~~V~~iT~R~~~ 143 (229)
T PF03767_consen 118 PGALELYNYAR---SRGVKVFFITGRPES 143 (229)
T ss_dssp TTHHHHHHHHH---HTTEEEEEEEEEETT
T ss_pred HHHHHHHHHHH---HCCCeEEEEecCCch
Confidence 67878666665 677999999975444
No 135
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=72.35 E-value=1.8 Score=45.85 Aligned_cols=14 Identities=50% Similarity=0.520 Sum_probs=12.4
Q ss_pred eeeEEEeCccchhh
Q 002166 142 CLGIVFDLDETLIV 155 (957)
Q Consensus 142 ~L~lV~DLDeTLi~ 155 (957)
++.|+.||||||+.
T Consensus 1 ~~li~tDlDGTLl~ 14 (249)
T TIGR01485 1 RLLLVSDLDNTLVD 14 (249)
T ss_pred CeEEEEcCCCcCcC
Confidence 47899999999995
No 136
>PTZ00174 phosphomannomutase; Provisional
Probab=71.89 E-value=5.4 Score=42.59 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=20.7
Q ss_pred eeeEEEeCccchhhhccccch-HHHHHHHHhhhc
Q 002166 142 CLGIVFDLDETLIVANTMRSF-EDRIEALLRKIS 174 (957)
Q Consensus 142 ~L~lV~DLDeTLi~A~t~~~~-e~ri~~l~~~~~ 174 (957)
.-.|++||||||+... +.+ +..+++|+++..
T Consensus 5 ~klia~DlDGTLL~~~--~~is~~~~~ai~~l~~ 36 (247)
T PTZ00174 5 KTILLFDVDGTLTKPR--NPITQEMKDTLAKLKS 36 (247)
T ss_pred CeEEEEECcCCCcCCC--CCCCHHHHHHHHHHHH
Confidence 4569999999999553 333 345666766543
No 137
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=69.39 E-value=2.6 Score=45.69 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=52.1
Q ss_pred cChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEecc-CCCc------cc--hhhhccC
Q 002166 264 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK-SGSR------KS--LFNVFQD 334 (957)
Q Consensus 264 Pgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~-sg~~------Ks--L~~lfp~ 334 (957)
|++.+|.++|. ++-++++++|.=.........+-|--.| |. +. ++++-|. ++.. |+ ...+-..
T Consensus 123 p~al~l~~~l~---~~G~~Vf~lTGR~e~~r~~T~~nL~~~G--~~--~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~ 194 (229)
T TIGR01675 123 PEGLKLYQKII---ELGIKIFLLSGRWEELRNATLDNLINAG--FT--GW-KHLILRGLEDSNKTVVTYKSEVRKSLMEE 194 (229)
T ss_pred HHHHHHHHHHH---HCCCEEEEEcCCChHHHHHHHHHHHHcC--CC--Cc-CeeeecCCCCCCchHhHHHHHHHHHHHhC
Confidence 67878666665 7788999999877666544544443333 22 11 5666664 2222 22 2223321
Q ss_pred CCCCCcEEEEEcCCcccCCCCCC-CCeEEeccccCc
Q 002166 335 GTCHPKMALVIDDRLKVWDDKDQ-PRVHVVPAFAPY 369 (957)
Q Consensus 335 g~~~~~mvVIIDDR~dVW~~~~~-~~v~vV~~Y~pf 369 (957)
.-+.+..|||...=...... .+..-.|-.+||
T Consensus 195 ---GYrIv~~iGDq~sDl~G~~~~~RtFKLPNPmYy 227 (229)
T TIGR01675 195 ---GYRIWGNIGDQWSDLLGSPPGRRTFKLPNPMYY 227 (229)
T ss_pred ---CceEEEEECCChHHhcCCCccCceeeCCCCccc
Confidence 34788999998432222222 255555555555
No 138
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=69.15 E-value=3.6 Score=44.23 Aligned_cols=32 Identities=31% Similarity=0.259 Sum_probs=22.5
Q ss_pred eeeEEEeCccchhhhccccchHHHHHHHHhhhc
Q 002166 142 CLGIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (957)
Q Consensus 142 ~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (957)
...|++||||||+..... .-+..++++++...
T Consensus 7 ~~lI~~DlDGTLL~~~~~-i~~~~~~ai~~l~~ 38 (271)
T PRK03669 7 PLLIFTDLDGTLLDSHTY-DWQPAAPWLTRLRE 38 (271)
T ss_pred CeEEEEeCccCCcCCCCc-CcHHHHHHHHHHHH
Confidence 467899999999965321 23677788876553
No 139
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=69.03 E-value=6.8 Score=39.71 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=50.2
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCCc-HHHHHHHHHhhCCCCCccccccccCeEEeccCCCccchhhhccCCCCCC
Q 002166 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAE-RDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHP 339 (957)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FEl~VyTmGt-R~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg~~KsL~~lfp~g~~~~ 339 (957)
++-|++.+++++|+ ..-+.++|.||+. +..+..+++.++-.- +++ +.+. ....+..++......+
T Consensus 43 ~~~pgv~e~L~~Lk---~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~-~~~---------~~KP-~p~~~~~~l~~~~~~~ 108 (170)
T TIGR01668 43 EAYPALRDWIEELK---AAGRKLLIVSNNAGEQRAKAVEKALGIPV-LPH---------AVKP-PGCAFRRAHPEMGLTS 108 (170)
T ss_pred CcChhHHHHHHHHH---HcCCEEEEEeCCchHHHHHHHHHHcCCEE-EcC---------CCCC-ChHHHHHHHHHcCCCH
Confidence 44589999777776 4458999999999 788888877654210 111 1122 1122333333222567
Q ss_pred cEEEEEcCCc--ccCCCC
Q 002166 340 KMALVIDDRL--KVWDDK 355 (957)
Q Consensus 340 ~mvVIIDDR~--dVW~~~ 355 (957)
+-+++|+|+. |+-..+
T Consensus 109 ~~~l~IGDs~~~Di~aA~ 126 (170)
T TIGR01668 109 EQVAVVGDRLFTDVMGGN 126 (170)
T ss_pred HHEEEECCcchHHHHHHH
Confidence 8899999995 777665
No 140
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=67.50 E-value=4.4 Score=41.80 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=20.3
Q ss_pred eEEEeCccchhhhccccch-HHHHHHHHhhhc
Q 002166 144 GIVFDLDETLIVANTMRSF-EDRIEALLRKIS 174 (957)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~-e~ri~~l~~~~~ 174 (957)
.|++||||||+.. .+.+ +..+++|+++..
T Consensus 5 li~~DlDGTLl~~--~~~i~~~~~~al~~l~~ 34 (230)
T PRK01158 5 AIAIDIDGTITDK--DRRLSLKAVEAIRKAEK 34 (230)
T ss_pred EEEEecCCCcCCC--CCccCHHHHHHHHHHHH
Confidence 5789999999954 3333 566777777653
No 141
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=66.75 E-value=4.3 Score=43.03 Aligned_cols=28 Identities=32% Similarity=0.199 Sum_probs=21.2
Q ss_pred EEEeCccchhhhccccchHHHHHHHHhhhc
Q 002166 145 IVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (957)
Q Consensus 145 lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (957)
++|||||||+.... ..+..+++++++..
T Consensus 2 i~~DlDGTLl~~~~--~~~~~~~ai~~l~~ 29 (225)
T TIGR02461 2 IFTDLDGTLLPPGY--EPGPAREALEELKD 29 (225)
T ss_pred EEEeCCCCCcCCCC--CchHHHHHHHHHHH
Confidence 78999999998544 35667888877654
No 142
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=65.77 E-value=8.5 Score=40.83 Aligned_cols=80 Identities=9% Similarity=0.053 Sum_probs=46.4
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHH--HHHHhhCCCCCccccccccCeEEeccCCCccchhhhccCCCC
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYAL--EMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTC 337 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~--~I~rlLDP~g~lFg~~~l~~RIisr~sg~~KsL~~lfp~g~~ 337 (957)
.++-||+.+++..|+ +.-+.++|.||++|..+. +.++-+.-+.. .++-|++-.......|.........
T Consensus 23 ~~~~pga~e~L~~L~---~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~------~~~~Ii~s~~~~~~~l~~~~~~~~~ 93 (242)
T TIGR01459 23 NHTYPGAVQNLNKII---AQGKPVYFVSNSPRNIFSLHKTLKSLGINAD------LPEMIISSGEIAVQMILESKKRFDI 93 (242)
T ss_pred CccCccHHHHHHHHH---HCCCEEEEEeCCCCChHHHHHHHHHCCCCcc------ccceEEccHHHHHHHHHhhhhhccC
Confidence 345699999888886 567899999999998776 44454332211 3456777543212223333221112
Q ss_pred CCcEEEEEcCC
Q 002166 338 HPKMALVIDDR 348 (957)
Q Consensus 338 ~~~mvVIIDDR 348 (957)
.++-+++|.|+
T Consensus 94 ~~~~~~~vGd~ 104 (242)
T TIGR01459 94 RNGIIYLLGHL 104 (242)
T ss_pred CCceEEEeCCc
Confidence 34456666664
No 143
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=64.84 E-value=4 Score=40.29 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=11.9
Q ss_pred eEEEeCccchhhhc
Q 002166 144 GIVFDLDETLIVAN 157 (957)
Q Consensus 144 ~lV~DLDeTLi~A~ 157 (957)
+|+|||||||+...
T Consensus 1 ~viFD~DGTL~D~~ 14 (175)
T TIGR01493 1 AMVFDVYGTLVDVH 14 (175)
T ss_pred CeEEecCCcCcccH
Confidence 58999999999654
No 144
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=64.65 E-value=6.4 Score=44.51 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=37.7
Q ss_pred eEEEeCccchhhhccccchHHHHHHHHhhhccCCChhhh--hhhHHHHHHhhhhHHHHHHHhhcCccccCCeEEE
Q 002166 144 GIVFDLDETLIVANTMRSFEDRIEALLRKISTEVDPQRI--AGMQAEVKRYQDDKNILKQYAENDQVNENGKVIK 216 (957)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~~~~dp~~~--~~~~~e~kr~~~D~~lL~q~~~~d~v~~~G~~~~ 216 (957)
.|++||||||+...+. ..+..+++|++.... .-|--+ .....|++.+..... .+.-.+..||-.|.
T Consensus 3 LIftDLDGTLLd~~~~-~~~~a~~aL~~Lk~~-GI~vVlaTGRt~~ev~~l~~~Lg-----l~~p~I~eNGA~I~ 70 (302)
T PRK12702 3 LVLSSLDGSLLDLEFN-SYGAARQALAALERR-SIPLVLYSLRTRAQLEHLCRQLR-----LEHPFICEDGSAIY 70 (302)
T ss_pred EEEEeCCCCCcCCCCc-CCHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhC-----CCCeEEEeCCcEEE
Confidence 5788999999986653 467777777655432 222111 123446655553222 11235777886664
No 145
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=64.58 E-value=9.3 Score=42.68 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=33.3
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 300 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rl 300 (957)
+++|||+.+|+.+|+ ..-..+.|.|.|-+.++..+++.
T Consensus 120 l~l~pG~~efl~~L~---~~GIpv~IvS~G~~~~Ie~vL~~ 157 (277)
T TIGR01544 120 VMLKDGYENFFDKLQ---QHSIPVFIFSAGIGNVLEEVLRQ 157 (277)
T ss_pred CccCcCHHHHHHHHH---HCCCcEEEEeCCcHHHHHHHHHH
Confidence 578999999777776 56689999999999999999995
No 146
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=64.30 E-value=11 Score=45.57 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=27.3
Q ss_pred eCcChHHHHHHHhhhccccEEEEEEeCCcH------------HHHHHHHHhhC
Q 002166 262 LRPAWEDLRSYLTARGRKRFEVYVCTMAER------------DYALEMWRLLD 302 (957)
Q Consensus 262 LRPgv~eLr~FL~a~~sk~FEl~VyTmGtR------------~YA~~I~rlLD 302 (957)
+-|++.+++..|. ..-|.+.|+||-.. .++..|++.|+
T Consensus 198 l~pgV~e~L~~L~---~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lg 247 (526)
T TIGR01663 198 IFPEIPEKLKELE---ADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLG 247 (526)
T ss_pred cccCHHHHHHHHH---HCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcC
Confidence 3488999777776 67899999999655 35666666543
No 147
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=63.76 E-value=19 Score=36.46 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=23.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcH
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAER 291 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR 291 (957)
+++.||+.+++..|+ .+-|.+.|.||+++
T Consensus 28 ~~~~pgv~e~L~~Lk---~~g~~l~I~Tn~~~ 56 (181)
T PRK08942 28 WIPIPGSIEAIARLK---QAGYRVVVATNQSG 56 (181)
T ss_pred eEECCCHHHHHHHHH---HCCCEEEEEeCCcc
Confidence 356799999888886 45699999999974
No 148
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=63.76 E-value=5.8 Score=42.13 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=20.4
Q ss_pred eEEEeCccchhhhccccch-HHHHHHHHhhhc
Q 002166 144 GIVFDLDETLIVANTMRSF-EDRIEALLRKIS 174 (957)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~-e~ri~~l~~~~~ 174 (957)
.|++||||||+... +.+ +..+++++++..
T Consensus 5 li~~DlDGTLl~~~--~~i~~~~~~ai~~l~~ 34 (270)
T PRK10513 5 LIAIDMDGTLLLPD--HTISPAVKQAIAAARA 34 (270)
T ss_pred EEEEecCCcCcCCC--CccCHHHHHHHHHHHH
Confidence 57899999999643 223 567777777653
No 149
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=63.69 E-value=20 Score=36.25 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=24.2
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcH
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAER 291 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR 291 (957)
+++-||+.+++..|+ ++-|.|.|.||+.+
T Consensus 25 ~~~~pgv~e~L~~Lk---~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 25 FEFIDGVIDALRELK---KMGYALVLVTNQSG 53 (176)
T ss_pred eEECCCHHHHHHHHH---HCCCEEEEEeCCcc
Confidence 456699999888886 56799999999985
No 150
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=62.72 E-value=9.9 Score=43.64 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=44.1
Q ss_pred EEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhh-CCCCCccccccccCeEEec
Q 002166 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLL-DPESNLINTKELLDRIVCV 320 (957)
Q Consensus 258 ~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlL-DP~g~lFg~~~l~~RIisr 320 (957)
-||+.-|++.+++..|+ +.-..+.|.||..+.|++.+++.| ++....=+-.++|+-||+-
T Consensus 181 ~yv~~~pgl~elL~~Lr---~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~ 241 (343)
T TIGR02244 181 KYVLRDPKLPLFLSKLK---EHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVD 241 (343)
T ss_pred HHhccchhHHHHHHHHH---HCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeC
Confidence 38888999999888886 456788899999999999999996 6322111123455677764
No 151
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=62.69 E-value=39 Score=37.07 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=19.0
Q ss_pred cchhhhccCCCCCCcEEEEEcCCcc
Q 002166 326 KSLFNVFQDGTCHPKMALVIDDRLK 350 (957)
Q Consensus 326 KsL~~lfp~g~~~~~mvVIIDDR~d 350 (957)
..|..+|......++-+|+|||+.+
T Consensus 165 ~~L~~fL~~~~~~pk~IIfIDD~~~ 189 (252)
T PF11019_consen 165 EVLKYFLDKINQSPKKIIFIDDNKE 189 (252)
T ss_pred HHHHHHHHHcCCCCCeEEEEeCCHH
Confidence 4566666655568899999999864
No 152
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=61.89 E-value=6.7 Score=38.93 Aligned_cols=13 Identities=38% Similarity=0.723 Sum_probs=11.2
Q ss_pred eEEEeCccchhhh
Q 002166 144 GIVFDLDETLIVA 156 (957)
Q Consensus 144 ~lV~DLDeTLi~A 156 (957)
.++|||||||+..
T Consensus 3 ~i~~DiDGTL~~~ 15 (126)
T TIGR01689 3 RLVMDLDNTITLT 15 (126)
T ss_pred EEEEeCCCCcccC
Confidence 6899999999854
No 153
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=61.52 E-value=6.8 Score=37.96 Aligned_cols=14 Identities=57% Similarity=0.750 Sum_probs=12.4
Q ss_pred eEEEeCccchhhhc
Q 002166 144 GIVFDLDETLIVAN 157 (957)
Q Consensus 144 ~lV~DLDeTLi~A~ 157 (957)
.||||||+||+..+
T Consensus 2 li~~DlD~Tl~~~~ 15 (128)
T TIGR01681 2 VIVFDLDNTLWTGE 15 (128)
T ss_pred EEEEeCCCCCCCCC
Confidence 48999999999885
No 154
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=61.27 E-value=13 Score=42.69 Aligned_cols=80 Identities=14% Similarity=0.268 Sum_probs=47.8
Q ss_pred EEeeCcChHHHHHHHhhhccccEEEEEEeCC---------------cHHHHHHHHHhhCCCCCccccccccCeEEec---
Q 002166 259 LVRLRPAWEDLRSYLTARGRKRFEVYVCTMA---------------ERDYALEMWRLLDPESNLINTKELLDRIVCV--- 320 (957)
Q Consensus 259 ~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmG---------------tR~YA~~I~rlLDP~g~lFg~~~l~~RIisr--- 320 (957)
.+++.|++.+++.+|+ .+-|.+.|.|++ .+.|+..+++. .|.+|. .-++|-
T Consensus 28 ~~~l~pGV~e~L~~Lk---~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~---~gl~fd-----~i~i~~~~~ 96 (354)
T PRK05446 28 KLAFEPGVIPALLKLQ---KAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFES---QGIKFD-----EVLICPHFP 96 (354)
T ss_pred cceECcCHHHHHHHHH---hCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHH---cCCcee-----eEEEeCCcC
Confidence 4788999999777776 677999999994 24444444444 344443 223442
Q ss_pred -cC-CCcc----chhhhccCCCCCCcEEEEEcCCc
Q 002166 321 -KS-GSRK----SLFNVFQDGTCHPKMALVIDDRL 349 (957)
Q Consensus 321 -~s-g~~K----sL~~lfp~g~~~~~mvVIIDDR~ 349 (957)
++ +..| -+..++.....+++-+++|.|+.
T Consensus 97 sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~ 131 (354)
T PRK05446 97 EDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRE 131 (354)
T ss_pred cccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCH
Confidence 11 1222 23333332235677889999984
No 155
>PRK09449 dUMP phosphatase; Provisional
Probab=59.24 E-value=5.4 Score=41.10 Aligned_cols=12 Identities=58% Similarity=0.725 Sum_probs=11.1
Q ss_pred eEEEeCccchhh
Q 002166 144 GIVFDLDETLIV 155 (957)
Q Consensus 144 ~lV~DLDeTLi~ 155 (957)
+|+||||||||.
T Consensus 5 ~iiFDlDGTLid 16 (224)
T PRK09449 5 WILFDADETLFH 16 (224)
T ss_pred EEEEcCCCchhc
Confidence 689999999995
No 156
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=58.83 E-value=19 Score=35.99 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=53.7
Q ss_pred EEEeeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEecc--CCCccchhhhccCC
Q 002166 258 VLVRLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVK--SGSRKSLFNVFQDG 335 (957)
Q Consensus 258 ~~vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~--sg~~KsL~~lfp~g 335 (957)
....+||++.+++..|+ ..-+.++|+|..++..|..+++.|.-.. ..|+++. ....|.+.++....
T Consensus 124 ~~d~~~~~~~~~l~~L~---~~Gi~~~i~TGD~~~~a~~~~~~lgi~~---------~~v~a~~~~kP~~k~~~~~i~~l 191 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELK---EAGIKVAILTGDNESTASAIAKQLGIFD---------SIVFARVIGKPEPKIFLRIIKEL 191 (215)
T ss_dssp EEEEBHTTHHHHHHHHH---HTTEEEEEEESSEHHHHHHHHHHTTSCS---------EEEEESHETTTHHHHHHHHHHHH
T ss_pred ecCcchhhhhhhhhhhh---ccCcceeeeecccccccccccccccccc---------ccccccccccccchhHHHHHHHH
Confidence 45678999999777776 4568999999999999999999976521 2233333 44444333333221
Q ss_pred CCCCcEEEEEcCCc
Q 002166 336 TCHPKMALVIDDRL 349 (957)
Q Consensus 336 ~~~~~mvVIIDDR~ 349 (957)
...+.-|+.|.|..
T Consensus 192 ~~~~~~v~~vGDg~ 205 (215)
T PF00702_consen 192 QVKPGEVAMVGDGV 205 (215)
T ss_dssp TCTGGGEEEEESSG
T ss_pred hcCCCEEEEEccCH
Confidence 13456788888864
No 157
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=58.80 E-value=7.4 Score=48.15 Aligned_cols=62 Identities=15% Similarity=0.006 Sum_probs=50.5
Q ss_pred CCCchHHHHHHHHhcCCCeEEEEeeec---CCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002166 704 TETPSGVLQDIAMKCGTKVEFRPALVA---STELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHL 770 (957)
Q Consensus 704 ~~n~KS~LQE~~QK~~~~~~Y~~v~~~---~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L 770 (957)
.++....|+|- .....|++..++ +|+++|...|.++|+++ .|.|-+||-|+.-||-.|++.+
T Consensus 505 lK~vsd~L~Ek----~rg~k~El~set~~gs~~~R~v~gV~rvG~~a-kG~~~~gd~a~~~a~Lca~~pt 569 (816)
T KOG3792|consen 505 LKLVSDELAEK----RRGDKYELPSETGTGSHDKRFVKGVMRVGILA-KGLLLNGDRAVELALLCAEKPT 569 (816)
T ss_pred hcchhHHHhhh----ccccceecccccCCCCCCceeeeeeeeeehhh-ccccccchHHHHHHHHhccCcc
Confidence 34456677774 445678887663 59999999999999998 9999999999999999888766
No 158
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=58.23 E-value=7.6 Score=41.01 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=20.6
Q ss_pred eEEEeCccchhhhccccchHHHHHHHHhhhc
Q 002166 144 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (957)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (957)
.|++||||||+.... .--+..+++++++..
T Consensus 5 li~~DlDGTLl~~~~-~i~~~~~~ai~~~~~ 34 (272)
T PRK10530 5 VIALDLDGTLLTPKK-TILPESLEALARARE 34 (272)
T ss_pred EEEEeCCCceECCCC-ccCHHHHHHHHHHHH
Confidence 578999999995432 123456777877654
No 159
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=58.19 E-value=7.6 Score=43.43 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=13.4
Q ss_pred cceeeEEEeCccchh
Q 002166 140 LRCLGIVFDLDETLI 154 (957)
Q Consensus 140 ~r~L~lV~DLDeTLi 154 (957)
..+.++|||+|||++
T Consensus 99 ~~~dA~V~DIDET~L 113 (275)
T TIGR01680 99 HEKDTFLFNIDGTAL 113 (275)
T ss_pred CCCCEEEEECccccc
Confidence 356999999999999
No 160
>PRK06769 hypothetical protein; Validated
Probab=58.09 E-value=18 Score=36.86 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=23.6
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCcH
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAER 291 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR 291 (957)
+.+-||+.+++.+|+ .+-|.|.|.|++..
T Consensus 27 ~~~~pgv~e~L~~Lk---~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 27 FTLFPFTKASLQKLK---ANHIKIFSFTNQPG 55 (173)
T ss_pred eEECCCHHHHHHHHH---HCCCEEEEEECCch
Confidence 356699999888887 45699999999875
No 161
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=57.58 E-value=16 Score=34.73 Aligned_cols=83 Identities=17% Similarity=0.212 Sum_probs=51.9
Q ss_pred EeeCcChHHHHHHHhhhccccEEEEEEeCCc--------HHHHHHHHHhhCCCCCccccccccCeE-Eec---cCCCccc
Q 002166 260 VRLRPAWEDLRSYLTARGRKRFEVYVCTMAE--------RDYALEMWRLLDPESNLINTKELLDRI-VCV---KSGSRKS 327 (957)
Q Consensus 260 vKLRPgv~eLr~FL~a~~sk~FEl~VyTmGt--------R~YA~~I~rlLDP~g~lFg~~~l~~RI-isr---~sg~~Ks 327 (957)
.++.|++.+++.+|+ ..-|.++|.|++. +.++.++++.++=. | ..+ +|- +. ....
T Consensus 24 ~~~~~~v~~~l~~L~---~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~---~------~~~~~~~~~~KP-~~~~ 90 (132)
T TIGR01662 24 RILYPEVPDALAELK---EAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP---I------DVLYACPHCRKP-KPGM 90 (132)
T ss_pred heeCCCHHHHHHHHH---HCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC---E------EEEEECCCCCCC-ChHH
Confidence 456799999888886 5679999999999 88888888876432 1 122 221 11 1112
Q ss_pred hhhhccCC-CCCCcEEEEEcCC--cccCCCC
Q 002166 328 LFNVFQDG-TCHPKMALVIDDR--LKVWDDK 355 (957)
Q Consensus 328 L~~lfp~g-~~~~~mvVIIDDR--~dVW~~~ 355 (957)
+..+.... ..+++-++.|+|+ .|+....
T Consensus 91 ~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~ 121 (132)
T TIGR01662 91 FLEALKRFNEIDPEESVYVGDQDLTDLQAAK 121 (132)
T ss_pred HHHHHHHcCCCChhheEEEcCCCcccHHHHH
Confidence 23333222 1467789999995 5665443
No 162
>PRK10976 putative hydrolase; Provisional
Probab=56.85 E-value=8.6 Score=40.84 Aligned_cols=30 Identities=23% Similarity=0.129 Sum_probs=20.8
Q ss_pred eEEEeCccchhhhccccchHHHHHHHHhhhc
Q 002166 144 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (957)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (957)
.+++||||||+.... .--+..+++++++..
T Consensus 4 li~~DlDGTLl~~~~-~is~~~~~ai~~l~~ 33 (266)
T PRK10976 4 VVASDLDGTLLSPDH-TLSPYAKETLKLLTA 33 (266)
T ss_pred EEEEeCCCCCcCCCC-cCCHHHHHHHHHHHH
Confidence 578999999996532 112556777877664
No 163
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=56.46 E-value=8.7 Score=41.09 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=20.4
Q ss_pred eEEEeCccchhhhccccchHHHHHHHHhhhc
Q 002166 144 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (957)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (957)
.+++||||||+.... .--+..+++++++..
T Consensus 4 li~~DlDGTLl~~~~-~i~~~~~~ai~~l~~ 33 (272)
T PRK15126 4 LAAFDMDGTLLMPDH-HLGEKTLSTLARLRE 33 (272)
T ss_pred EEEEeCCCcCcCCCC-cCCHHHHHHHHHHHH
Confidence 578999999996432 123556777777654
No 164
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=55.20 E-value=9.9 Score=39.24 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=18.2
Q ss_pred eEEEeCccchhhhccccch-HHHHHHHHhhh
Q 002166 144 GIVFDLDETLIVANTMRSF-EDRIEALLRKI 173 (957)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~-e~ri~~l~~~~ 173 (957)
.|++||||||+.. -+.+ +..+++++++.
T Consensus 3 ~v~~DlDGTLl~~--~~~i~~~~~~~i~~l~ 31 (215)
T TIGR01487 3 LVAIDIDGTLTEP--NRMISERAIEAIRKAE 31 (215)
T ss_pred EEEEecCCCcCCC--CcccCHHHHHHHHHHH
Confidence 5789999999943 2334 44556666553
No 165
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=54.63 E-value=4 Score=47.93 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=55.1
Q ss_pred CCchHHHHHHHHhcCC-CeEEEEeeecCCCceEEEEEEECCEEEEEeec-CCHHHHHHHHHHHHHHHHHh
Q 002166 705 ETPSGVLQDIAMKCGT-KVEFRPALVASTELQFSIEAWFAGEKIGEGIG-RTRREAQRQAAEGSIKHLAN 772 (957)
Q Consensus 705 ~n~KS~LQE~~QK~~~-~~~Y~~v~~~~Hdk~FtveV~I~G~~~GeG~G-kSKKEAEq~AAk~AL~~L~~ 772 (957)
.++|..|-.||-+.+. .+.|+++.. .++.|..-+.+.|++|-.+.+ ++||-|||.||..||.....
T Consensus 375 ~~~k~~l~~~~~~~~~~~~~ye~~~~--~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l 442 (477)
T KOG2334|consen 375 DTPKMVLADLCVKTKANGPVYETVQR--TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNL 442 (477)
T ss_pred CCHHHHHHHhhhhhcCCCcchhhhhh--hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCc
Confidence 4789999999998774 578887532 688999999999999987764 78999999999999988754
No 166
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=54.53 E-value=9.6 Score=39.34 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=19.4
Q ss_pred EEEeCccchhhhccccchHHHHHHHHhhh
Q 002166 145 IVFDLDETLIVANTMRSFEDRIEALLRKI 173 (957)
Q Consensus 145 lV~DLDeTLi~A~t~~~~e~ri~~l~~~~ 173 (957)
|++||||||+..... ..+..+++|+.+.
T Consensus 2 i~~DlDGTLL~~~~~-~~~~~~~~l~~l~ 29 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY-DWQPAAPWLTRLQ 29 (221)
T ss_pred EEEeCCCCCcCCCCC-CcHHHHHHHHHHH
Confidence 799999999965432 2455667776643
No 167
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=53.07 E-value=6.1 Score=39.07 Aligned_cols=14 Identities=21% Similarity=0.676 Sum_probs=12.0
Q ss_pred eEEEeCccchhhhc
Q 002166 144 GIVFDLDETLIVAN 157 (957)
Q Consensus 144 ~lV~DLDeTLi~A~ 157 (957)
+|+|||||||+...
T Consensus 3 ~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 3 AVIFDMDGVIVDTA 16 (185)
T ss_pred eEEEcCCCcccCCh
Confidence 58999999999664
No 168
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=52.40 E-value=6.3 Score=40.14 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=13.4
Q ss_pred eEEEeCccchhhhccc
Q 002166 144 GIVFDLDETLIVANTM 159 (957)
Q Consensus 144 ~lV~DLDeTLi~A~t~ 159 (957)
+|+||+|||||....+
T Consensus 3 ~viFD~DGTL~d~~~~ 18 (224)
T TIGR02254 3 TLLFDLDDTILDFQAA 18 (224)
T ss_pred EEEEcCcCcccccchH
Confidence 5899999999976654
No 169
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=51.49 E-value=56 Score=35.35 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=61.2
Q ss_pred ccccceEEEeecCCcCCCCcchhhhhcccCceeEeeccC--CCccHHHHHHHHHhhhcccceEeec--CCCceeEEEEee
Q 002166 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESK--SSDNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVAMY 110 (957)
Q Consensus 35 ~~~~~~~i~~~~~~~e~~~pl~~lh~i~~~~~~~~~~~~--~~~~~~l~~lh~~c~~e~ktav~~~--~~~~elhlva~~ 110 (957)
.-.++|+|-+|-+.+ ..|+ .|.+. ...|-.-.. ..-..++..|+.+|.+.+|.||++. ..+...+|||+.
T Consensus 86 ~~~~~l~ilgF~~~~-~i~~---~~~~~--~s~~l~P~~~~~~s~~af~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~ 159 (272)
T cd00594 86 ETSKGLDILGFVPAS-EIPP---YYFDK--ESYYLVPDDSDKGSEKAFSALRRALLEKDKVAIARYVLRRNSRPRLVALR 159 (272)
T ss_pred CCCCeEEEEeEechH-hCCc---ceecC--CcEEEEcCCCCcccHHHHHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEe
Confidence 346889999998876 3333 24443 344443222 2348899999999999999999998 445689999997
Q ss_pred ecCCCCCccEEEEEeecc
Q 002166 111 SRNNEKQYPCFWAFSVGS 128 (957)
Q Consensus 111 ~~~~~~~~p~F~~~~~~~ 128 (957)
....+ ..+|||....+.
T Consensus 160 P~~~~-~~~gl~l~~LPf 176 (272)
T cd00594 160 PQEEE-DPEGLVLVTLPF 176 (272)
T ss_pred ccccC-CCCEEEEEccCC
Confidence 77543 457887766664
No 170
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=50.63 E-value=12 Score=42.50 Aligned_cols=14 Identities=64% Similarity=0.852 Sum_probs=12.1
Q ss_pred eEEEeCccchhhhc
Q 002166 144 GIVFDLDETLIVAN 157 (957)
Q Consensus 144 ~lV~DLDeTLi~A~ 157 (957)
.||||||+|||...
T Consensus 130 ~i~~D~D~TL~~~~ 143 (303)
T PHA03398 130 VIVFDLDSTLITDE 143 (303)
T ss_pred EEEEecCCCccCCC
Confidence 68999999999664
No 171
>PF14954 LIX1: Limb expression 1
Probab=50.61 E-value=31 Score=37.74 Aligned_cols=63 Identities=24% Similarity=0.219 Sum_probs=43.5
Q ss_pred CCchHHHHHHHH-h--cCC------CeEEEEeeecCCCceEEEEEEECC-EEEEEe-ecCCHHHHHHHHHHHHHHH
Q 002166 705 ETPSGVLQDIAM-K--CGT------KVEFRPALVASTELQFSIEAWFAG-EKIGEG-IGRTRREAQRQAAEGSIKH 769 (957)
Q Consensus 705 ~n~KS~LQE~~Q-K--~~~------~~~Y~~v~~~~Hdk~FtveV~I~G-~~~GeG-~GkSKKEAEq~AAk~AL~~ 769 (957)
-|-...|||+=| | .+. .+.|+. .++..+-|..-|.+-| --||.= .=.||-||++.|||-||-+
T Consensus 21 vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs--~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 21 VNVVEALQEFWQMKQSRGADLKSEALVVYES--VPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred chHHHHHHHHHHHHHhccccCCCCCeeeeec--cCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHH
Confidence 367899999763 3 232 146765 3667888988888765 333321 2479999999999999843
No 172
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=50.57 E-value=7.3 Score=41.06 Aligned_cols=12 Identities=33% Similarity=0.656 Sum_probs=11.3
Q ss_pred eEEEeCccchhh
Q 002166 144 GIVFDLDETLIV 155 (957)
Q Consensus 144 ~lV~DLDeTLi~ 155 (957)
+++|||||||+.
T Consensus 12 ~vIFDlDGTL~d 23 (224)
T PRK14988 12 TVLLDMDGTLLD 23 (224)
T ss_pred EEEEcCCCCccc
Confidence 699999999997
No 173
>PLN02423 phosphomannomutase
Probab=49.84 E-value=17 Score=39.18 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=19.0
Q ss_pred eeeEEEeCccchhhhccccch-HHHHHHHHhhh
Q 002166 142 CLGIVFDLDETLIVANTMRSF-EDRIEALLRKI 173 (957)
Q Consensus 142 ~L~lV~DLDeTLi~A~t~~~~-e~ri~~l~~~~ 173 (957)
++.++|||||||+..+ +.+ +..++++++..
T Consensus 7 ~~i~~~D~DGTLl~~~--~~i~~~~~~ai~~l~ 37 (245)
T PLN02423 7 GVIALFDVDGTLTAPR--KEATPEMLEFMKELR 37 (245)
T ss_pred ceEEEEeccCCCcCCC--CcCCHHHHHHHHHHH
Confidence 4566699999999554 334 44456665543
No 174
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=48.83 E-value=7.5 Score=41.69 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=12.2
Q ss_pred eEEEeCccchhhhc
Q 002166 144 GIVFDLDETLIVAN 157 (957)
Q Consensus 144 ~lV~DLDeTLi~A~ 157 (957)
+|+||||||||...
T Consensus 6 ~vIFDlDGTLiDs~ 19 (267)
T PRK13478 6 AVIFDWAGTTVDFG 19 (267)
T ss_pred EEEEcCCCCeecCC
Confidence 78999999999753
No 175
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=48.27 E-value=14 Score=39.21 Aligned_cols=28 Identities=36% Similarity=0.356 Sum_probs=19.4
Q ss_pred eeeEEEeCccchhhhccccchHHHHHHHH
Q 002166 142 CLGIVFDLDETLIVANTMRSFEDRIEALL 170 (957)
Q Consensus 142 ~L~lV~DLDeTLi~A~t~~~~e~ri~~l~ 170 (957)
.-.|++||||||+..+.. --+..+++|+
T Consensus 3 ~kli~~DlDGTLl~~~~~-i~~~~~~al~ 30 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKT-ISPETKEALA 30 (264)
T ss_pred eeEEEEcCCCCccCCCCc-cCHHHHHHHH
Confidence 357899999999987754 2344455554
No 176
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=47.58 E-value=16 Score=34.77 Aligned_cols=12 Identities=58% Similarity=0.852 Sum_probs=10.7
Q ss_pred eEEEeCccchhh
Q 002166 144 GIVFDLDETLIV 155 (957)
Q Consensus 144 ~lV~DLDeTLi~ 155 (957)
+|+||+|+||+.
T Consensus 2 ~~~~D~dgtL~~ 13 (132)
T TIGR01662 2 GVVLDLDGTLTD 13 (132)
T ss_pred EEEEeCCCceec
Confidence 589999999994
No 177
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=47.45 E-value=22 Score=32.05 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=24.2
Q ss_pred CCEEEeecccCCHHHHHHHHHHHHHHHHhh
Q 002166 879 DGQVLGKGIGSTWDEAKMQAAEKALGSLRS 908 (957)
Q Consensus 879 gGkvyG~G~G~SKKeAKqqAAk~AL~sL~s 908 (957)
.+..+|.|.|.+.+.|++.|-...-++|+.
T Consensus 11 ~~~l~a~G~~~~~~~A~~~A~~~la~~i~~ 40 (92)
T PF02169_consen 11 QQYLYAVGSGSSREQAKQDALANLAEQISV 40 (92)
T ss_pred ccEEEEEEcccChHHHHHHHHHHHHHheeE
Confidence 345789999999999999987777777763
No 178
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=46.77 E-value=14 Score=41.41 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=21.7
Q ss_pred eeEEEeCccchhhhccccchHHHHHHHHhh
Q 002166 143 LGIVFDLDETLIVANTMRSFEDRIEALLRK 172 (957)
Q Consensus 143 L~lV~DLDeTLi~A~t~~~~e~ri~~l~~~ 172 (957)
++++||+||||+..... ++.-.++++..
T Consensus 1 ~~~ifD~DGvL~~g~~~--i~ga~eal~~L 28 (321)
T TIGR01456 1 FGFAFDIDGVLFRGKKP--IAGASDALRRL 28 (321)
T ss_pred CEEEEeCcCceECCccc--cHHHHHHHHHH
Confidence 58999999999976554 77777776553
No 179
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=44.82 E-value=15 Score=39.04 Aligned_cols=28 Identities=32% Similarity=0.318 Sum_probs=19.5
Q ss_pred EEEeCccchhhhccccchHHHHHHHHhhh
Q 002166 145 IVFDLDETLIVANTMRSFEDRIEALLRKI 173 (957)
Q Consensus 145 lV~DLDeTLi~A~t~~~~e~ri~~l~~~~ 173 (957)
|++||||||+..... .++..++++++..
T Consensus 2 i~~DlDGTll~~~~~-~~~~~~~~i~~l~ 29 (256)
T TIGR01486 2 IFTDLDGTLLDPHGY-DWGPAKEVLERLQ 29 (256)
T ss_pred EEEcCCCCCcCCCCc-CchHHHHHHHHHH
Confidence 789999999977641 2445667766544
No 180
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=44.61 E-value=30 Score=31.21 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=22.0
Q ss_pred CEEEEEeecCCHHHHHHHHHHHHHHHHHh
Q 002166 744 GEKIGEGIGRTRREAQRQAAEGSIKHLAN 772 (957)
Q Consensus 744 G~~~GeG~GkSKKEAEq~AAk~AL~~L~~ 772 (957)
+..+|.|.|.+++.|+++|-.+..+.|..
T Consensus 12 ~~l~a~G~~~~~~~A~~~A~~~la~~i~~ 40 (92)
T PF02169_consen 12 QYLYAVGSGSSREQAKQDALANLAEQISV 40 (92)
T ss_pred cEEEEEEcccChHHHHHHHHHHHHHheeE
Confidence 45789999999988888876666665543
No 181
>PLN02151 trehalose-phosphatase
Probab=44.38 E-value=22 Score=41.21 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.0
Q ss_pred chhhhHHHHhhcceeeEEEeCccchh
Q 002166 129 GLYNSCLTMLNLRCLGIVFDLDETLI 154 (957)
Q Consensus 129 ~~y~~~~~ml~~r~L~lV~DLDeTLi 154 (957)
..++..+.+.+.++++|+||+||||+
T Consensus 85 ~~~~~~~~~~~~~~~ll~lDyDGTL~ 110 (354)
T PLN02151 85 NMFEEILHKSEGKQIVMFLDYDGTLS 110 (354)
T ss_pred HHHHHHHHhhcCCceEEEEecCccCC
Confidence 36667777778889999999999999
No 182
>PLN02887 hydrolase family protein
Probab=43.44 E-value=21 Score=43.79 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=25.5
Q ss_pred HHhhcceeeEEEeCccchhhhccccc-hHHHHHHHHhhhcc
Q 002166 136 TMLNLRCLGIVFDLDETLIVANTMRS-FEDRIEALLRKIST 175 (957)
Q Consensus 136 ~ml~~r~L~lV~DLDeTLi~A~t~~~-~e~ri~~l~~~~~~ 175 (957)
|....+-=.|++||||||+... +. -+..+++++++...
T Consensus 302 ~~~~~~iKLIa~DLDGTLLn~d--~~Is~~t~eAI~kl~ek 340 (580)
T PLN02887 302 RFYKPKFSYIFCDMDGTLLNSK--SQISETNAKALKEALSR 340 (580)
T ss_pred hhhccCccEEEEeCCCCCCCCC--CccCHHHHHHHHHHHHC
Confidence 3333343468999999999653 22 36778888887653
No 183
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=42.99 E-value=18 Score=36.81 Aligned_cols=13 Identities=54% Similarity=0.846 Sum_probs=11.1
Q ss_pred EEEeCccchhhhc
Q 002166 145 IVFDLDETLIVAN 157 (957)
Q Consensus 145 lV~DLDeTLi~A~ 157 (957)
|++||||||+...
T Consensus 2 i~~D~DgTL~~~~ 14 (204)
T TIGR01484 2 LFFDLDGTLLDPN 14 (204)
T ss_pred EEEeCcCCCcCCC
Confidence 7899999999653
No 184
>PLN03017 trehalose-phosphatase
Probab=42.22 E-value=16 Score=42.46 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=22.7
Q ss_pred chhhhHHHHhhcceeeEEEeCccchh
Q 002166 129 GLYNSCLTMLNLRCLGIVFDLDETLI 154 (957)
Q Consensus 129 ~~y~~~~~ml~~r~L~lV~DLDeTLi 154 (957)
..++.-..+.+.+++.|++|+||||+
T Consensus 98 ~~~~~~~~~~~~k~~llflD~DGTL~ 123 (366)
T PLN03017 98 EMFEQIMEASRGKQIVMFLDYDGTLS 123 (366)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCcCc
Confidence 46677777789999999999999999
No 185
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=41.29 E-value=11 Score=41.31 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=11.9
Q ss_pred eEEEeCccchhhhc
Q 002166 144 GIVFDLDETLIVAN 157 (957)
Q Consensus 144 ~lV~DLDeTLi~A~ 157 (957)
+|+|||||||+...
T Consensus 42 ~VIFDlDGTLvDS~ 55 (286)
T PLN02779 42 ALLFDCDGVLVETE 55 (286)
T ss_pred EEEEeCceeEEccc
Confidence 68999999999543
No 186
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=40.43 E-value=21 Score=38.58 Aligned_cols=30 Identities=37% Similarity=0.304 Sum_probs=19.5
Q ss_pred eeEEEeCccchhhhccccchHHHHHHHHhhh
Q 002166 143 LGIVFDLDETLIVANTMRSFEDRIEALLRKI 173 (957)
Q Consensus 143 L~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~ 173 (957)
-.|++||||||+.... ...+.-+++++...
T Consensus 5 kli~~DlDGTLl~~~~-~~~~~~~~ai~~l~ 34 (273)
T PRK00192 5 LLVFTDLDGTLLDHHT-YSYEPAKPALKALK 34 (273)
T ss_pred eEEEEcCcccCcCCCC-cCcHHHHHHHHHHH
Confidence 3689999999996432 22455566665543
No 187
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=39.70 E-value=14 Score=41.11 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.1
Q ss_pred hcceeeEEEeCccchhh
Q 002166 139 NLRCLGIVFDLDETLIV 155 (957)
Q Consensus 139 ~~r~L~lV~DLDeTLi~ 155 (957)
..++-+||+|||||+|.
T Consensus 76 k~K~~aVvlDlDETvLd 92 (274)
T COG2503 76 KGKKKAVVLDLDETVLD 92 (274)
T ss_pred cCCCceEEEecchHhhc
Confidence 34557999999999995
No 188
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=39.69 E-value=17 Score=38.41 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=16.2
Q ss_pred HHhhcceeeEEEeCccchhhh
Q 002166 136 TMLNLRCLGIVFDLDETLIVA 156 (957)
Q Consensus 136 ~ml~~r~L~lV~DLDeTLi~A 156 (957)
.|.++--=+|++|||+|||-=
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~w 42 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPW 42 (175)
T ss_pred HHHHcCCcEEEEeccCceecc
Confidence 455555678999999999944
No 189
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=39.39 E-value=19 Score=37.80 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=17.0
Q ss_pred EEEeCccchhhhccccchHHHHHHH
Q 002166 145 IVFDLDETLIVANTMRSFEDRIEAL 169 (957)
Q Consensus 145 lV~DLDeTLi~A~t~~~~e~ri~~l 169 (957)
|++||||||+. +.+.+.++.+.+
T Consensus 2 i~~DlDgTLl~--~~~~~~~~~~~~ 24 (236)
T TIGR02471 2 IITDLDNTLLG--DDEGLASFVELL 24 (236)
T ss_pred eEEeccccccC--CHHHHHHHHHHH
Confidence 78999999995 556676666444
No 190
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=38.61 E-value=24 Score=38.47 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=13.2
Q ss_pred eeeEEEeCccchhhh
Q 002166 142 CLGIVFDLDETLIVA 156 (957)
Q Consensus 142 ~L~lV~DLDeTLi~A 156 (957)
++.|+||+||||+..
T Consensus 14 ~~li~~D~DGTLl~~ 28 (266)
T PRK10187 14 NYAWFFDLDGTLAEI 28 (266)
T ss_pred CEEEEEecCCCCCCC
Confidence 589999999999964
No 191
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=38.05 E-value=1e+02 Score=37.89 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=59.4
Q ss_pred ccccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCCC----ccHHHHHHHHHhhhcccceEeec--CCCceeEEEE
Q 002166 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSS----DNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVA 108 (957)
Q Consensus 35 ~~~~~~~i~~~~~~~e~~~pl~~lh~i~~~~~~~~~~~~~~----~~~~l~~lh~~c~~e~ktav~~~--~~~~elhlva 108 (957)
+....|+|-+|-+.+. .++ .|.+. .+.|-. +... -..++..||..|.+.+|.||+.. +.+.-=+|||
T Consensus 316 ~~~~~l~ilGF~~~s~-l~~---~~~~~--~s~fi~-Pde~~~~gs~~afsaL~~~l~~~~kvAI~~~v~r~~~~P~lva 388 (584)
T TIGR00578 316 FDPPGLQLMGFKPLSM-LKK---HHHLR--PSLFVY-PEESLVRGSTTLFSALLQKCLEKEVAALCRYISRRNQPPYFVA 388 (584)
T ss_pred cCCCceEEEeeccHHH-CCc---hhhcC--CceEEe-cCCcccccHHHHHHHHHHHHHhcCcEEEEEEEecCCCCCEEEE
Confidence 3567899999988873 333 35553 234433 3322 26789999999999999999998 5456678999
Q ss_pred eeecCCCC-------CccEEEEEeecc
Q 002166 109 MYSRNNEK-------QYPCFWAFSVGS 128 (957)
Q Consensus 109 ~~~~~~~~-------~~p~F~~~~~~~ 128 (957)
+.....+. ..+|||....|.
T Consensus 389 L~P~~~~~d~~~~q~~p~G~~l~~LPf 415 (584)
T TIGR00578 389 LVPQEEELDDQKIQVTPPGFHLVFLPF 415 (584)
T ss_pred EeCCcccccccCCccCCCeEEEEecCc
Confidence 88764211 127888877663
No 192
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=37.42 E-value=27 Score=34.36 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=12.6
Q ss_pred eEEEeCccchhhhcc
Q 002166 144 GIVFDLDETLIVANT 158 (957)
Q Consensus 144 ~lV~DLDeTLi~A~t 158 (957)
++.||+|+||+.-..
T Consensus 2 ~~~~d~dgtl~~~~~ 16 (147)
T TIGR01656 2 ALFLDRDGVINEDTV 16 (147)
T ss_pred eEEEeCCCceeccCC
Confidence 578999999997664
No 193
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=36.87 E-value=21 Score=38.52 Aligned_cols=13 Identities=46% Similarity=0.347 Sum_probs=11.8
Q ss_pred eeeEEEeCccchh
Q 002166 142 CLGIVFDLDETLI 154 (957)
Q Consensus 142 ~L~lV~DLDeTLi 154 (957)
++.||.|||+|||
T Consensus 2 ~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 2 PRLLASDLDGTLI 14 (247)
T ss_dssp SEEEEEETBTTTB
T ss_pred CEEEEEECCCCCc
Confidence 4679999999999
No 194
>PF02735 Ku: Ku70/Ku80 beta-barrel domain; InterPro: IPR006164 The Ku heterodimer is composed of Ku70 and Ku80 (or Ku86), 70 kDa and 80 kDa subunits of an ATP-dependent DNA helicase, which contributes to genomic integrity through its ability to bind DNA double-stranded breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-binding beta-barrel domain and is found in both the Ku70 and Ku80 proteins. Ku makes only a few contacts with the sugar-phosphate backbone, and none with the DNA bases, but it fits sterically to major and minor groove contours forming a ring that encircles duplex DNA, cradling two full turns of the DNA molecule. By forming a bridge between the broken DNA ends, Ku acts to structurally support and align the DNA ends, to protect them from degradation, and to prevent promiscuous binding to unbroken DNA. Ku effectively aligns the DNA, while still allowing access of polymerases, nucleases and ligases to the broken DNA ends to promote end joining [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0006303 double-strand break repair via nonhomologous end joining; PDB: 1JEY_B 1JEQ_B.
Probab=36.45 E-value=1.2e+02 Score=31.59 Aligned_cols=87 Identities=17% Similarity=0.175 Sum_probs=51.8
Q ss_pred ccccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCCCc---cHHHHHHHHHhhhcccceEeec--CCCceeEEEEe
Q 002166 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSD---NIQLHLLHSSCIRENKTAVMPL--GLTEELHLVAM 109 (957)
Q Consensus 35 ~~~~~~~i~~~~~~~e~~~pl~~lh~i~~~~~~~~~~~~~~~---~~~l~~lh~~c~~e~ktav~~~--~~~~elhlva~ 109 (957)
+...+|+|.+|-+.+. .|+ .|.+. ...|-.-..... ...+..|+..|.+.+|-||++. ..+.+-+|||+
T Consensus 80 ~~~~~l~ilGF~~~~~-i~~---~~~~~--~~~~i~p~~~~~~~s~~~f~aL~~am~~~~~vaI~r~v~r~~~~p~l~aL 153 (200)
T PF02735_consen 80 ETSPGLEILGFVPRSN-IPP---YYFMG--ESYFIVPDEKSGEGSAKAFSALVQAMLEKNKVAIARYVLRSNSRPRLVAL 153 (200)
T ss_dssp -S-SEEEEEEEEEGGG-S-C---CG-EC--EEEEEEEETTTECCHHHHHHHHHHHHHHCTEEEEEEEESSTTS--EEEEE
T ss_pred cCCCeEEEEEEEcchh-CCc---eEEeC--CcEEEEECCCCcchhHHHHHHHHHHHHhcCcEEEEEEEEcCCCCcEEEEE
Confidence 3458999999998773 333 23333 233333222221 6899999999999999999998 44569999999
Q ss_pred eecCCCC-CccEEEEEeec
Q 002166 110 YSRNNEK-QYPCFWAFSVG 127 (957)
Q Consensus 110 ~~~~~~~-~~p~F~~~~~~ 127 (957)
....... ..+||+....+
T Consensus 154 ~P~~~~~~~~~gl~~~~Lp 172 (200)
T PF02735_consen 154 IPQIEESDTPEGLVLIRLP 172 (200)
T ss_dssp EEEE-CEEC-CEEEEEE--
T ss_pred EEeccccCCCCeEEEEEcC
Confidence 8886431 11555544333
No 195
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=36.36 E-value=20 Score=38.54 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=22.2
Q ss_pred eEEEeCccchhhhccccchHHHHHHHHhhhc
Q 002166 144 GIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (957)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (957)
.++|||||||+.... .+...+++++++..
T Consensus 3 ~~~~D~DGtl~~~~~--~i~~a~~~l~~l~~ 31 (249)
T TIGR01457 3 GYLIDLDGTMYKGKE--RIPEAETFVHELQK 31 (249)
T ss_pred EEEEeCCCceEcCCe--eCcCHHHHHHHHHH
Confidence 589999999997764 46677888776654
No 196
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=35.90 E-value=16 Score=38.64 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=31.8
Q ss_pred EeeCcChHHHHH-HHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 002166 260 VRLRPAWEDLRS-YLTARGRKRFEVYVCTMAERDYALEMWRL 300 (957)
Q Consensus 260 vKLRPgv~eLr~-FL~a~~sk~FEl~VyTmGtR~YA~~I~rl 300 (957)
++++|++.+++. .|+ ++-+.+.|.|+..+.|+..+++.
T Consensus 93 ~~l~pga~e~L~~~l~---~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLE---SSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHH---hCCCEEEEEcCCcHHHHHHHHHh
Confidence 367899999653 554 56899999999999999999976
No 197
>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]
Probab=35.30 E-value=47 Score=40.31 Aligned_cols=126 Identities=8% Similarity=-0.087 Sum_probs=81.2
Q ss_pred CCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCCCCcccccccCcCCCCCCC
Q 002166 731 STELQFSIEAWFAGEKIGEGIGRTRREAQRQAAEGSIKHLANVYMLRVKSDSGSGHGDGSRFSNANENCFMGEINSFGGQ 810 (957)
Q Consensus 731 ~Hdk~FtveV~I~G~~~GeG~GkSKKEAEq~AAk~AL~~L~~~~~a~~~~~~~~~~~D~~~~p~~~eN~f~~~~ns~~~~ 810 (957)
.++..+++++.|++.....+-+++|+.+.++++ ...+. . |+..---.--++|...
T Consensus 11 ~~e~~~~~q~~ik~~e~s~~~~~~~~~~~~~~~-------~sr~a---~--------~~e~~~~~~~~g~~~~------- 65 (516)
T KOG1033|consen 11 RIERVATVQTQIKAREDSFPANKSKVRHNKRVI-------TSREA---N--------DFEPGQCLGRGGFGVV------- 65 (516)
T ss_pred ccccceeeeeeeccccccccccccchhhhhhhh-------hhhhh---c--------cccccccccccCcccc-------
Confidence 478899999999999999999999999999987 11110 0 0000000000111000
Q ss_pred CCCcCcCCCCCCCCcCCCcccCCCCCCChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEECCEEEeecccCC
Q 002166 811 PLAKDESLSSEPSKLVDPRLEGSKKLMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIGST 890 (957)
Q Consensus 811 ~~s~~d~~sse~srl~~~~l~~s~~~~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~IgGkvyG~G~G~S 890 (957)
.+. .-...+++.++++++.+....+..... ..+..-.+-+|.-++-.+..|.+|.|..
T Consensus 66 --------~~~-----------~n~~d~~~~avkritlkn~e~s~~rvl---~~~~s~a~feh~g~~~~~ha~~~~~~~~ 123 (516)
T KOG1033|consen 66 --------FSA-----------QNKADENKYAVKRITLKNREESRSRVL---REVSSLAEFEHPGIKRYFHAWYERPPLG 123 (516)
T ss_pred --------CCc-----------cccccchhhHHHHhcccchhhhhhhhh---ccccchhhhcccchhhheeceecCCCCc
Confidence 000 013457889999999877666654432 2333333445566777888999999999
Q ss_pred HHHHHHHHHHHHH
Q 002166 891 WDEAKMQAAEKAL 903 (957)
Q Consensus 891 KKeAKqqAAk~AL 903 (957)
|++++..++....
T Consensus 124 ~qe~~d~~~l~~~ 136 (516)
T KOG1033|consen 124 WQEEMDLKLLDDE 136 (516)
T ss_pred ccchhhhhhhhcc
Confidence 9999998887777
No 198
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=35.21 E-value=1.5e+02 Score=27.88 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=52.0
Q ss_pred cccccceEeccccceeeeecCCCCCCceEEEeeCcChHHHHHHHhhhc--cccEEEEEEeCCcHHHHHHHHHhhCCCCCc
Q 002166 230 QALVRPLIRLQEKNIILTRINPQIRDTSVLVRLRPAWEDLRSYLTARG--RKRFEVYVCTMAERDYALEMWRLLDPESNL 307 (957)
Q Consensus 230 ~~~~rpvirl~~~n~~ltrI~P~~r~~~~~vKLRPgv~eLr~FL~a~~--sk~FEl~VyTmGtR~YA~~I~rlLDP~g~l 307 (957)
+++++=.||+|....+-.|.+... -+.+|+.|+...+ ...|+| -|+
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~-----------~L~~v~~fv~~~g~~~~~f~L--~t~------------------- 50 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQA-----------KLLALVRHVQSKGYPNERFEL--LTN------------------- 50 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCC-----------cHHHHHHHHHhcCCCCCCEEE--ecC-------------------
Confidence 345666899999888888877655 3778888886321 223333 232
Q ss_pred cccccccCeEEeccCCCccchhhhccCCCCCCcEEEEEcCC
Q 002166 308 INTKELLDRIVCVKSGSRKSLFNVFQDGTCHPKMALVIDDR 348 (957)
Q Consensus 308 Fg~~~l~~RIisr~sg~~KsL~~lfp~g~~~~~mvVIIDDR 348 (957)
|. .|+++-++-. ++|+.+- -.++.++||-||
T Consensus 51 FP-----Rr~~~~~d~~-~TL~e~G----L~P~~~LfVq~r 81 (82)
T cd01773 51 FP-----RRKLSHLDYD-ITLQEAG----LCPQETVFVQER 81 (82)
T ss_pred CC-----CcccCCcccC-CCHHHcC----CCCCcEEEEecC
Confidence 77 7888765444 5777664 357899999998
No 199
>cd00789 KU_like Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.
Probab=34.60 E-value=1.3e+02 Score=33.31 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=55.7
Q ss_pred ccccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCCCccHHHHHHHHHhhhcccceEeec--CCCceeEEEEeeec
Q 002166 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVAMYSR 112 (957)
Q Consensus 35 ~~~~~~~i~~~~~~~e~~~pl~~lh~i~~~~~~~~~~~~~~~~~~l~~lh~~c~~e~ktav~~~--~~~~elhlva~~~~ 112 (957)
+..+.|.|.+|-+.++-.| .|+ +...| +.+......++..|+..|.+.+|.||++. + +.| ||||+...
T Consensus 84 ~~~~~i~IlgFv~~~~I~~----~y~---~~syy-l~P~~~~~kaf~~L~~Al~~~~kvaIar~V~r-~~~-~l~aL~P~ 153 (256)
T cd00789 84 ESTRTIEIVDFVPLDEIDP----IYF---DKPYY-LAPDKGGEKAYALLREALRDTGKVAIAKVVLR-TRE-RLAALRPR 153 (256)
T ss_pred CCCCeEEEEeEeCHHHCCH----hHc---CCCEE-EecCCCcchHHHHHHHHHHHcCCEEEEEEEEc-CCc-eEEEEEEC
Confidence 3568899999998876553 232 23344 54554558899999999999999999998 4 456 99999876
Q ss_pred CCCCCccEEEEEeec
Q 002166 113 NNEKQYPCFWAFSVG 127 (957)
Q Consensus 113 ~~~~~~p~F~~~~~~ 127 (957)
. .|||....+
T Consensus 154 ~-----~gL~l~~Lp 163 (256)
T cd00789 154 G-----KGLVLNTLR 163 (256)
T ss_pred C-----CEEEEEECC
Confidence 4 355554433
No 200
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=34.33 E-value=31 Score=35.02 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=15.5
Q ss_pred eEEEeCccchhhhccccchHHH
Q 002166 144 GIVFDLDETLIVANTMRSFEDR 165 (957)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~r 165 (957)
.+++|+|+||+...+...+-+.
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~ 22 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPI 22 (157)
T ss_pred CEEEecCCCCcccccccccccc
Confidence 3799999999977654433333
No 201
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=33.41 E-value=15 Score=46.84 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=60.1
Q ss_pred CCccCCCCCCchHHHHHHHHhcCCCeEEEEee-ecCCCceEEEEEEE-----CCEEEEEeecCCHHHHHHHHHHHHHHHH
Q 002166 697 SGRDVSSTETPSGVLQDIAMKCGTKVEFRPAL-VASTELQFSIEAWF-----AGEKIGEGIGRTRREAQRQAAEGSIKHL 770 (957)
Q Consensus 697 ~~~~~~~~~n~KS~LQE~~QK~~~~~~Y~~v~-~~~Hdk~FtveV~I-----~G~~~GeG~GkSKKEAEq~AAk~AL~~L 770 (957)
.++.+...+|.|..|++|-|+...+..|+.+. .++|.+.|+.+..| +-.+.+.+.|.+||.|+..-|..-++.|
T Consensus 159 ~ihg~wt~eN~K~~ln~~~q~~~~~~~y~~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm 238 (1282)
T KOG0921|consen 159 EIHGNWTMENAKKALNEYLQKMRIQDNYKYTIVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQL 238 (1282)
T ss_pred cccCCCCcchhHHHHhHHHhhhhhccccceeecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHH
Confidence 45666678899999999999988888777654 47899999987653 5567789999999999999888777665
No 202
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.31 E-value=66 Score=32.51 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=27.0
Q ss_pred hHHHHHHHHhhhccCCChhhhh----hhHHHHHHhhhhHHHHHHHhhcC
Q 002166 162 FEDRIEALLRKISTEVDPQRIA----GMQAEVKRYQDDKNILKQYAEND 206 (957)
Q Consensus 162 ~e~ri~~l~~~~~~~~dp~~~~----~~~~e~kr~~~D~~lL~q~~~~d 206 (957)
+.++|++...|+ .||.-++ .|+.||.+.- |++|.+|++=|
T Consensus 42 m~RTlKaFd~WL---qdP~ItshMPreML~dv~~~~--~~il~~llelD 85 (126)
T PF09921_consen 42 MMRTLKAFDQWL---QDPMITSHMPREMLEDVWETL--REILEQLLELD 85 (126)
T ss_pred HHHHHHHHHHHH---cCchhHhcCCHHHHHHHHHHH--HHHHHHHHHHh
Confidence 678899999999 5666554 6777776543 45555655543
No 203
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=32.09 E-value=44 Score=35.69 Aligned_cols=15 Identities=40% Similarity=0.439 Sum_probs=13.3
Q ss_pred ceeeEEEeCccchhh
Q 002166 141 RCLGIVFDLDETLIV 155 (957)
Q Consensus 141 r~L~lV~DLDeTLi~ 155 (957)
|+..|+||+||||+-
T Consensus 2 ~~~~l~lD~DGTL~~ 16 (244)
T TIGR00685 2 RKRAFFFDYDGTLSE 16 (244)
T ss_pred CcEEEEEecCccccC
Confidence 578899999999985
No 204
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=31.19 E-value=27 Score=37.83 Aligned_cols=34 Identities=9% Similarity=-0.091 Sum_probs=24.2
Q ss_pred cChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHh
Q 002166 264 PAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRL 300 (957)
Q Consensus 264 Pgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rl 300 (957)
+.+.+...+|. ..-+.+.|.|+..+.|+......
T Consensus 123 ~~l~~a~~~L~---~~~~~~~iatn~~~~~~~~~~~~ 156 (257)
T TIGR01458 123 QILNQAFRLLL---DGAKPLLIAIGKGRYYKRKDGLA 156 (257)
T ss_pred HHHHHHHHHHH---cCCCCEEEEeCCCCCCcCCCCCC
Confidence 56667677776 45567889999998887654444
No 205
>PF00333 Ribosomal_S5: Ribosomal protein S5, N-terminal domain; InterPro: IPR013810 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S5 is one of the proteins from the small ribosomal subunit, and is a protein of 166 to 254 amino-acid residues. In Escherichia coli, S5 is known to be important in the assembly and function of the 30S ribosomal subunit. Mutations in S5 have been shown to increase translational error frequencies. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial, cyanelle, red algal chloroplast, archaeal and fungal mitochondrial S5; mammalian, Caenorhabditis elegans, Drosophila and plant S2; and yeast S4 (SUP44). This entry represents the N-terminal domain of ribosomal protein S5, which has an alpha-beta(3)-alpha structure that folds into two layers, alpha/beta.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZKQ_e 2XZN_E 2XZM_E 3O30_B 1S1H_E 3IZB_E 3U5C_C 3U5G_C 3O2Z_B 3BBN_E ....
Probab=30.30 E-value=41 Score=30.25 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=29.4
Q ss_pred CCceEEEEEEECCEE----EEEeecCCHHHHHHHHHHHHHHHH
Q 002166 732 TELQFSIEAWFAGEK----IGEGIGRTRREAQRQAAEGSIKHL 770 (957)
Q Consensus 732 Hdk~FtveV~I~G~~----~GeG~GkSKKEAEq~AAk~AL~~L 770 (957)
.-..|.+-|.+++.. ||.|.++.-..|-++|-++|.++|
T Consensus 20 r~~~~~alvvvGn~~G~vG~G~gKa~~~~~Ai~kA~~~A~knl 62 (67)
T PF00333_consen 20 RIFSFRALVVVGNGNGLVGFGVGKAKEVPDAIRKAKRKAKKNL 62 (67)
T ss_dssp EEEEEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHCSE
T ss_pred ceeEEEEEEEEecCCCcEecCcccchhHHHHHHHHHHHHHhCC
Confidence 356788888887753 667777777889999988887654
No 206
>cd00873 KU80 Ku-core domain, Ku80 subfamily; Ku80 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=29.80 E-value=1.7e+02 Score=32.67 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=56.4
Q ss_pred ccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCC--CccHHHHHHHHHhhhcccceEeec--CCCceeEEEEeeec
Q 002166 37 FDEIRISYFSEASERCPPLAVLHTITASGICFKMESKS--SDNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVAMYSR 112 (957)
Q Consensus 37 ~~~~~i~~~~~~~e~~~pl~~lh~i~~~~~~~~~~~~~--~~~~~l~~lh~~c~~e~ktav~~~--~~~~elhlva~~~~ 112 (957)
.++|.|.+|-+.++- |+. |.+. ...|-.-... ....++..|+.+|.+.+|.||++. ..+++.+|+|+...
T Consensus 96 ~~~l~ilgF~~~~~i-~~~---~~~~--~s~~l~P~~~~~~~~~a~~aL~~am~~~~k~aI~r~v~r~~~~p~l~aL~P~ 169 (300)
T cd00873 96 SKGLDILGFIKASNV-PRY---YLMG--ESSYVVPQQDDEAAALAFSALVRALAELDKYAIARYVYKDNSEPQLGVLFPR 169 (300)
T ss_pred CCceEEEeeccHHHC-Chh---heeC--CcEEEEcCCCChhHHHHHHHHHHHHHhCCCEEEEEEEEcCCCCcEEEEEecc
Confidence 578888888777632 322 3332 3444333321 137899999999999999999998 55778999999887
Q ss_pred CCCCCccEEEEEeec
Q 002166 113 NNEKQYPCFWAFSVG 127 (957)
Q Consensus 113 ~~~~~~p~F~~~~~~ 127 (957)
... ...||+....+
T Consensus 170 ~~~-~~~~l~l~~LP 183 (300)
T cd00873 170 IKE-DYECLVLVRLP 183 (300)
T ss_pred ccC-CCCEEEEEecC
Confidence 532 24566655444
No 207
>PRK10444 UMP phosphatase; Provisional
Probab=29.67 E-value=31 Score=37.40 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=21.4
Q ss_pred eEEEeCccchhhhccccchHHHHHHHHhhh
Q 002166 144 GIVFDLDETLIVANTMRSFEDRIEALLRKI 173 (957)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~ 173 (957)
.++|||||||+...+. ++.-++++++..
T Consensus 3 ~v~~DlDGtL~~~~~~--~p~a~~~l~~L~ 30 (248)
T PRK10444 3 NVICDIDGVLMHDNVA--VPGAAEFLHRIL 30 (248)
T ss_pred EEEEeCCCceEeCCee--CccHHHHHHHHH
Confidence 5899999999988743 777777775443
No 208
>PLN02382 probable sucrose-phosphatase
Probab=29.31 E-value=36 Score=39.79 Aligned_cols=17 Identities=41% Similarity=0.362 Sum_probs=14.4
Q ss_pred cceeeEEEeCccchhhh
Q 002166 140 LRCLGIVFDLDETLIVA 156 (957)
Q Consensus 140 ~r~L~lV~DLDeTLi~A 156 (957)
.-+|.||-|||||||-.
T Consensus 7 ~~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCCEEEEEcCCCcCcCC
Confidence 45799999999999954
No 209
>cd00788 KU70 Ku-core domain, Ku70 subfamily; Ku70 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in the nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=27.96 E-value=2.1e+02 Score=31.84 Aligned_cols=86 Identities=22% Similarity=0.250 Sum_probs=55.9
Q ss_pred ccccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCC----CccHHHHHHHHHhhhcccceEeec--CCCceeEEEE
Q 002166 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKS----SDNIQLHLLHSSCIRENKTAVMPL--GLTEELHLVA 108 (957)
Q Consensus 35 ~~~~~~~i~~~~~~~e~~~pl~~lh~i~~~~~~~~~~~~~----~~~~~l~~lh~~c~~e~ktav~~~--~~~~elhlva 108 (957)
.-..+|+|.+|-+.++ -++ .|.+. ...|-. +.. +...++..|+.+|.+.+|.||++. ..+..-+|||
T Consensus 92 ~~~~~l~ilgF~~~~~-i~~---~~~~~--~s~fl~-P~~~~~~gs~~af~aL~~am~~~~kvaIa~~v~r~~~~p~l~a 164 (287)
T cd00788 92 FGEPGLRLIGFKPRST-LKP---YHNIK--KSYFIY-PDESDYKGSTRLFAALLRSCLKKNKVAICWYILRKNSPPRLVA 164 (287)
T ss_pred cCCCceEEEeeccHHH-CCh---hhccC--CceeEe-cCcccccCcHHHHHHHHHHHHhcCcEEEEEEEecCCCCCEEEE
Confidence 3467899999987762 222 24443 233333 333 337899999999999999999998 3344669999
Q ss_pred eeecCCCC-------CccEEEEEeec
Q 002166 109 MYSRNNEK-------QYPCFWAFSVG 127 (957)
Q Consensus 109 ~~~~~~~~-------~~p~F~~~~~~ 127 (957)
+....... ..+|||....+
T Consensus 165 L~P~~~~~~~~~~~~~~~gl~l~~LP 190 (287)
T cd00788 165 LVPQEEELDEPDGQVLPPGFHLVPLP 190 (287)
T ss_pred EeccccccCCCCCccCCCcEEEEecC
Confidence 87653211 13677765544
No 210
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=27.62 E-value=32 Score=27.25 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=15.9
Q ss_pred HHhhcCccccCCeEEEeeccc
Q 002166 201 QYAENDQVNENGKVIKVQSEV 221 (957)
Q Consensus 201 q~~~~d~v~~~G~~~~~q~E~ 221 (957)
.|..+|.|++||++++++--.
T Consensus 9 ~Y~~Gd~V~~~g~~y~a~~~~ 29 (41)
T PF02839_consen 9 TYNAGDRVSYNGKLYQAKWWT 29 (41)
T ss_dssp EE-TT-EEEETTEEEEESSSC
T ss_pred EEcCCCEEEECCCEEEEeecc
Confidence 477899999999999987643
No 211
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=27.55 E-value=58 Score=30.65 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=0.0
Q ss_pred EEEeCccchhhhccccchHHHHHHHHhhhccC-------CChhhh-hhhHHHHHHh
Q 002166 145 IVFDLDETLIVANTMRSFEDRIEALLRKISTE-------VDPQRI-AGMQAEVKRY 192 (957)
Q Consensus 145 lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~~~-------~dp~~~-~~~~~e~kr~ 192 (957)
++|||||||+.-.+. +..-.|+++...... +|+.+. ..+.+.++++
T Consensus 1 ~l~D~dGvl~~g~~~--ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~ 54 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEP--IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKL 54 (101)
T ss_dssp EEEESTTTSEETTEE---TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHT
T ss_pred CEEeCccEeEeCCCc--CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhc
No 212
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=27.38 E-value=30 Score=35.24 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=11.4
Q ss_pred EEEeCccchhhhcccc
Q 002166 145 IVFDLDETLIVANTMR 160 (957)
Q Consensus 145 lV~DLDeTLi~A~t~~ 160 (957)
+-||||+|||...+..
T Consensus 3 a~fD~DgTLi~~~s~~ 18 (159)
T PF08645_consen 3 AFFDLDGTLIKTKSGK 18 (159)
T ss_dssp EEE-SCTTTEE-STST
T ss_pred EEEeCCCCccCCCCCC
Confidence 5799999999887654
No 213
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=27.03 E-value=37 Score=37.01 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=20.1
Q ss_pred eEEEeCccchhhhccccchHHHHHHHHhhh
Q 002166 144 GIVFDLDETLIVANTMRSFEDRIEALLRKI 173 (957)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~ 173 (957)
+++||+||||+...+ .++...++|+++.
T Consensus 4 ~~~~D~DGtl~~~~~--~~~ga~e~l~~L~ 31 (279)
T TIGR01452 4 GFIFDCDGVLWLGER--VVPGAPELLDRLA 31 (279)
T ss_pred EEEEeCCCceEcCCe--eCcCHHHHHHHHH
Confidence 688999999997543 4666666665543
No 214
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=26.84 E-value=51 Score=30.59 Aligned_cols=33 Identities=30% Similarity=0.215 Sum_probs=21.5
Q ss_pred EEEEEEECCEEEeecccCCHHHHHHHHHHHHHHHH
Q 002166 872 VYAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSL 906 (957)
Q Consensus 872 F~~qV~IgGkvyG~G~G~SKKeAKqqAAk~AL~sL 906 (957)
|.+.--|.|+++|-|+ ++.+|+.+|.++=..-.
T Consensus 29 y~Yr~P~tGk~~~LG~--d~~~Ai~~A~eaN~~i~ 61 (75)
T PF09003_consen 29 YQYRNPITGKEHGLGT--DRAEAIAQAIEANLRIA 61 (75)
T ss_dssp EEEE-TTTS-EEEEES---HHHHHHHHHHHHHHHT
T ss_pred EEEecCCCCceeeCCC--CHHHHHHHHHHHHHHHH
Confidence 3355668999885555 99999999987655443
No 215
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=26.52 E-value=51 Score=41.34 Aligned_cols=33 Identities=27% Similarity=0.176 Sum_probs=23.1
Q ss_pred ceeeEEEeCccchhhhccccchHHHHHHHHhhhc
Q 002166 141 RCLGIVFDLDETLIVANTMRSFEDRIEALLRKIS 174 (957)
Q Consensus 141 r~L~lV~DLDeTLi~A~t~~~~e~ri~~l~~~~~ 174 (957)
.+-.|++||||||+...+. ..+..+++|++...
T Consensus 415 ~~KLIfsDLDGTLLd~d~~-i~~~t~eAL~~L~e 447 (694)
T PRK14502 415 FKKIVYTDLDGTLLNPLTY-SYSTALDALRLLKD 447 (694)
T ss_pred eeeEEEEECcCCCcCCCCc-cCHHHHHHHHHHHH
Confidence 3457889999999976542 24566777776553
No 216
>TIGR01021 rpsE_bact ribosomal protein S5, bacterial/organelle type. This model finds chloroplast ribosomal protein S5 as well as bacterial ribosomal protein S5. A candidate mitochondrial form (Saccharomyces cerevisiae YBR251W and its homolog) differs substantially and is not included in this model.
Probab=24.85 E-value=80 Score=32.69 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=29.9
Q ss_pred CCceEEEEEEECCEE----EEEeecCCHHHHHHHHHHHHHHHHHh
Q 002166 732 TELQFSIEAWFAGEK----IGEGIGRTRREAQRQAAEGSIKHLAN 772 (957)
Q Consensus 732 Hdk~FtveV~I~G~~----~GeG~GkSKKEAEq~AAk~AL~~L~~ 772 (957)
.-..|.+-|.|++.. ||.|.++.-.+|-++|.++|.++|..
T Consensus 20 r~~sf~alvvvGn~~G~vG~G~GKa~ev~~Ai~kA~~~Ak~nl~~ 64 (154)
T TIGR01021 20 RRFSFSALVVVGDGKGRVGFGFGKAKEVPDAIKKAVEKARKNLIN 64 (154)
T ss_pred cEEEEEEEEEEECCCCeEeeeeeecchHHHHHHHHHHHHHhCeEE
Confidence 345788888888764 55555666678888998888877753
No 217
>TIGR02772 Ku_bact Ku protein, prokaryotic. Members of this protein family are Ku proteins of non-homologous end joining (NHEJ) DNA repair in bacteria and in at least one member of the archaea (Archaeoglobus fulgidus). Most members are encoded by a gene adjacent to the gene for the DNA ligase that completes the repair. The NHEJ system is broadly but rather sparsely distributed, being present in about one fifth of the first 250 completed prokarytotic genomes. A few species (e.g. Archaeoglobus fulgidus and Bradyrhizobium japonicum) have multiple copies that appear to represent recent paralogous family expansion.
Probab=24.32 E-value=2.7e+02 Score=30.96 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=49.6
Q ss_pred ccccceEEEeecCCcCCCCcchhhhhcccCceeEeeccCCCccHHHHHHHHHhhhcccceEeec-CCCceeEEEEeeecC
Q 002166 35 KVFDEIRISYFSEASERCPPLAVLHTITASGICFKMESKSSDNIQLHLLHSSCIRENKTAVMPL-GLTEELHLVAMYSRN 113 (957)
Q Consensus 35 ~~~~~~~i~~~~~~~e~~~pl~~lh~i~~~~~~~~~~~~~~~~~~l~~lh~~c~~e~ktav~~~-~~~~elhlva~~~~~ 113 (957)
+..+.|.|.+|-+.++ .+|. |+ +.. |-+.+......++..|+..|.+.+|.||++. -++.| ||+|+....
T Consensus 85 ~~~~~i~I~gFv~~~~-i~~~---y~---~~s-yyl~P~~~~~~a~~~L~~Al~~~~kvaIar~v~r~r~-~l~aL~P~~ 155 (258)
T TIGR02772 85 ESTKTIEIEAFVDADE-IDPI---YF---DTP-YYLAPDKGGEKAYALLREALEDTGKVGIAKVVLRGRE-RLAALRPVG 155 (258)
T ss_pred cCCCeEEEEEEeCHHH-CChh---ee---CCC-EEEccCCCchHHHHHHHHHHHHcCCEEEEEEEEcCCc-EEEEEEECC
Confidence 3457899999987754 3442 22 223 4454544448899999999999999999988 22455 799998764
No 218
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=24.19 E-value=58 Score=34.10 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=15.3
Q ss_pred hcceeeEEEeCccchhhhccc
Q 002166 139 NLRCLGIVFDLDETLIVANTM 159 (957)
Q Consensus 139 ~~r~L~lV~DLDeTLi~A~t~ 159 (957)
..--=+||||+|.||..-+..
T Consensus 38 ~~Gik~li~DkDNTL~~~~~~ 58 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPYED 58 (168)
T ss_pred hcCceEEEEcCCCCCCCCCcC
Confidence 333468999999999865543
No 219
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=24.00 E-value=82 Score=38.01 Aligned_cols=43 Identities=21% Similarity=0.148 Sum_probs=36.9
Q ss_pred EEEeeCcChHHHHHHHhhhcccc-EEEEEEeCCcHHHHHHHHHhhCC
Q 002166 258 VLVRLRPAWEDLRSYLTARGRKR-FEVYVCTMAERDYALEMWRLLDP 303 (957)
Q Consensus 258 ~~vKLRPgv~eLr~FL~a~~sk~-FEl~VyTmGtR~YA~~I~rlLDP 303 (957)
+...+||++.++++.|+ +.- +.++|.|...+.+|.++++.++=
T Consensus 381 ~~d~~~~g~~e~l~~L~---~~g~i~v~ivTgd~~~~a~~i~~~lgi 424 (556)
T TIGR01525 381 LRDQLRPEAKEAIAALK---RAGGIKLVMLTGDNRSAAEAVAAELGI 424 (556)
T ss_pred ecccchHhHHHHHHHHH---HcCCCeEEEEeCCCHHHHHHHHHHhCC
Confidence 34579999999888886 456 99999999999999999999654
No 220
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=23.00 E-value=37 Score=33.87 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=44.2
Q ss_pred eeCcChHHHHHHHhhhccccEEEEEEeCCcHHHHHHHHHhhCCCCCccccccccCeEEeccCCCccchhhhccCCCCCCc
Q 002166 261 RLRPAWEDLRSYLTARGRKRFEVYVCTMAERDYALEMWRLLDPESNLINTKELLDRIVCVKSGSRKSLFNVFQDGTCHPK 340 (957)
Q Consensus 261 KLRPgv~eLr~FL~a~~sk~FEl~VyTmGtR~YA~~I~rlLDP~g~lFg~~~l~~RIisr~sg~~KsL~~lfp~g~~~~~ 340 (957)
.++++. ..+.|+ .+-+.+.|.|++.+..+..+++.+.-+ .+|. +.+ +....+..+...-...++
T Consensus 30 ~~~~~~--~i~~Lk---~~G~~i~IvTn~~~~~~~~~l~~~gi~-~~~~---------~~~-~k~~~~~~~~~~~~~~~~ 93 (154)
T TIGR01670 30 NVRDGY--GIRCAL---KSGIEVAIITGRKAKLVEDRCKTLGIT-HLYQ---------GQS-NKLIAFSDILEKLALAPE 93 (154)
T ss_pred echhHH--HHHHHH---HCCCEEEEEECCCCHHHHHHHHHcCCC-EEEe---------ccc-chHHHHHHHHHHcCCCHH
Confidence 344443 456776 677999999999999999999885433 2232 111 122223333322224567
Q ss_pred EEEEEcCCc
Q 002166 341 MALVIDDRL 349 (957)
Q Consensus 341 mvVIIDDR~ 349 (957)
.++.|.|+.
T Consensus 94 ~~~~vGDs~ 102 (154)
T TIGR01670 94 NVAYIGDDL 102 (154)
T ss_pred HEEEECCCH
Confidence 788888874
No 221
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=22.62 E-value=96 Score=32.81 Aligned_cols=18 Identities=44% Similarity=0.486 Sum_probs=14.9
Q ss_pred eEEEeCccchhhhccccc
Q 002166 144 GIVFDLDETLIVANTMRS 161 (957)
Q Consensus 144 ~lV~DLDeTLi~A~t~~~ 161 (957)
..+||+||||+.-.|+..
T Consensus 7 la~FDfDgTLt~~ds~~~ 24 (210)
T TIGR01545 7 IIFFDLDGTLHQQDMFGS 24 (210)
T ss_pred EEEEcCCCCCccCccHHH
Confidence 368999999998887754
No 222
>PF10195 Phospho_p8: DNA-binding nuclear phosphoprotein p8; InterPro: IPR018792 P8 is a short 80-82 amino acid protein that is conserved from nematodes to humans. It carries at least one protein kinase C domain suggesting a possible role in signal transduction and it is thought to be a phosphoprotein, but the sites of phosphorylation and the kinases involved remain to be determined [].
Probab=22.46 E-value=37 Score=30.31 Aligned_cols=15 Identities=47% Similarity=0.855 Sum_probs=11.9
Q ss_pred EEeecCCHHHHHHHH
Q 002166 748 GEGIGRTRREAQRQA 762 (957)
Q Consensus 748 GeG~GkSKKEAEq~A 762 (957)
|.|.|+|||||...-
T Consensus 23 GsgKgRTK~E~~~ht 37 (60)
T PF10195_consen 23 GSGKGRTKKEAAEHT 37 (60)
T ss_pred CCCCCccHHHHHHhc
Confidence 578899999987653
No 223
>CHL00138 rps5 ribosomal protein S5; Validated
Probab=21.96 E-value=1e+02 Score=31.60 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=30.2
Q ss_pred CCceEEEEEEECCEE----EEEeecCCHHHHHHHHHHHHHHHHHh
Q 002166 732 TELQFSIEAWFAGEK----IGEGIGRTRREAQRQAAEGSIKHLAN 772 (957)
Q Consensus 732 Hdk~FtveV~I~G~~----~GeG~GkSKKEAEq~AAk~AL~~L~~ 772 (957)
....|.+-|.+++.. ||.|.++.-.+|-++|.+.|.+.|..
T Consensus 42 R~~~f~alvvvGn~~G~vG~G~GKa~ev~~Ai~KA~~~Akknl~~ 86 (143)
T CHL00138 42 KKLSFRAIVVIGNENGWVGVGVGKADDVQNAVKKAVTDAKKNLIT 86 (143)
T ss_pred cEEEEEEEEEEECCCCeEEEeeEecchHHHHHHHHHHHHHhCeEE
Confidence 456888888888764 55555566678888888888887753
No 224
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=21.66 E-value=46 Score=33.32 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=11.5
Q ss_pred eEEEeCccchhhhc
Q 002166 144 GIVFDLDETLIVAN 157 (957)
Q Consensus 144 ~lV~DLDeTLi~A~ 157 (957)
+|+||.||||+.-.
T Consensus 3 ~i~fDktGTLt~~~ 16 (215)
T PF00702_consen 3 AICFDKTGTLTQGK 16 (215)
T ss_dssp EEEEECCTTTBESH
T ss_pred EEEEecCCCcccCe
Confidence 58999999997543
No 225
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=21.04 E-value=43 Score=34.37 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=0.0
Q ss_pred eEEEeCccchh
Q 002166 144 GIVFDLDETLI 154 (957)
Q Consensus 144 ~lV~DLDeTLi 154 (957)
.||||+|+||+
T Consensus 23 li~~D~Dgtl~ 33 (183)
T PRK09484 23 LLICDVDGVFS 33 (183)
T ss_pred EEEEcCCeeee
No 226
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.03 E-value=2.7e+02 Score=35.90 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=9.0
Q ss_pred cccchhcchhhhhh
Q 002166 394 RGGFFKEFDEGLLQ 407 (957)
Q Consensus 394 h~~FF~~~De~l~~ 407 (957)
+-.||+-++++++|
T Consensus 421 rpqYykLIEecISq 434 (1102)
T KOG1924|consen 421 RPQYYKLIEECISQ 434 (1102)
T ss_pred hHHHHHHHHHHHHH
Confidence 44566777777665
No 227
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=20.70 E-value=2.3e+02 Score=34.33 Aligned_cols=38 Identities=18% Similarity=0.476 Sum_probs=29.9
Q ss_pred hhhhHHHHHH-------h-hhhHHHHHHHhhcCccccCCeEEEeec
Q 002166 182 IAGMQAEVKR-------Y-QDDKNILKQYAENDQVNENGKVIKVQS 219 (957)
Q Consensus 182 ~~~~~~e~kr-------~-~~D~~lL~q~~~~d~v~~~G~~~~~q~ 219 (957)
+-.+++|+++ | .-|..+.++|++.=+|+..|+++-++.
T Consensus 196 IL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~ 241 (534)
T COG4172 196 ILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGT 241 (534)
T ss_pred HHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCc
Confidence 3456677764 2 339999999999999999999987765
No 228
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=20.70 E-value=38 Score=40.26 Aligned_cols=66 Identities=17% Similarity=0.071 Sum_probs=54.2
Q ss_pred CCChhHHHHHHhhhcCCceeeeecCCCCCCCCCCccEEEEEEECCEEEeeccc-CCHHHHHHHHHHHHHHHH
Q 002166 836 LMGSVSALKELCMTEGLGVVFQQQPPSSANSVQKDEVYAQVEIDGQVLGKGIG-STWDEAKMQAAEKALGSL 906 (957)
Q Consensus 836 ~~NpVglLNELcqkeGL~v~f~~~~~~~sGp~h~keF~~qV~IgGkvyG~G~G-~SKKeAKqqAAk~AL~sL 906 (957)
...+.+-|-.||.+.+.+-+-|+. ...-.+-|...++++|+.|..+.+ .|||.|.|.||..||...
T Consensus 374 ~~~~k~~l~~~~~~~~~~~~~ye~-----~~~~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s 440 (477)
T KOG2334|consen 374 WDTPKMVLADLCVKTKANGPVYET-----VQRTDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKS 440 (477)
T ss_pred CCCHHHHHHHhhhhhcCCCcchhh-----hhhhhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhc
Confidence 357899999999998888877753 222557899999999999988766 689999999999998765
No 229
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.70 E-value=48 Score=40.19 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=17.8
Q ss_pred HHHhhcceeeEEEeCccchhhhc
Q 002166 135 LTMLNLRCLGIVFDLDETLIVAN 157 (957)
Q Consensus 135 ~~ml~~r~L~lV~DLDeTLi~A~ 157 (957)
.-|--.++=+||+|||+||..-.
T Consensus 215 ~A~~g~~kK~LVLDLDNTLWGGV 237 (574)
T COG3882 215 AAMSGKSKKALVLDLDNTLWGGV 237 (574)
T ss_pred HHhhCcccceEEEecCCcccccc
Confidence 34556677789999999998654
No 230
>cd00036 ChtBD3 Chitin/cellulose binding domain. Putative carbohydrate binding domain found in many different glycosyl hydrolase enzymes. May occur in tandem arrangements.
Probab=20.27 E-value=58 Score=25.69 Aligned_cols=19 Identities=42% Similarity=0.523 Sum_probs=16.6
Q ss_pred HHhhcCccccCCeEEEeec
Q 002166 201 QYAENDQVNENGKVIKVQS 219 (957)
Q Consensus 201 q~~~~d~v~~~G~~~~~q~ 219 (957)
-|..+|.|++||+.|+++-
T Consensus 7 ~Y~~Gd~V~~~g~~y~a~w 25 (41)
T cd00036 7 VYTAGDLVSYNGKVYKAKW 25 (41)
T ss_pred EecCCCEEEECCeEEEEee
Confidence 4778999999999999865
No 231
>PRK00550 rpsE 30S ribosomal protein S5; Validated
Probab=20.24 E-value=1.1e+02 Score=32.23 Aligned_cols=41 Identities=29% Similarity=0.350 Sum_probs=30.0
Q ss_pred CCceEEEEEEECCEE----EEEeecCCHHHHHHHHHHHHHHHHHh
Q 002166 732 TELQFSIEAWFAGEK----IGEGIGRTRREAQRQAAEGSIKHLAN 772 (957)
Q Consensus 732 Hdk~FtveV~I~G~~----~GeG~GkSKKEAEq~AAk~AL~~L~~ 772 (957)
....|.+-|.|++.. ||.|.++.-.+|-++|...|.++|..
T Consensus 31 r~~~f~alvvvGn~~G~vG~G~gKa~ev~~Ai~kA~~~A~~nl~~ 75 (168)
T PRK00550 31 RRFSFSALVVVGDGKGRVGFGYGKAREVPEAIRKAVEDAKKNMIK 75 (168)
T ss_pred cEEEEEEEEEEECCCCeEeeeeeecchHHHHHHHHHHHHHhCEEE
Confidence 456888888888764 55555666678888888888777754
No 232
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=20.11 E-value=1.6e+02 Score=29.42 Aligned_cols=11 Identities=27% Similarity=0.525 Sum_probs=9.6
Q ss_pred eEEEeCccchh
Q 002166 144 GIVFDLDETLI 154 (957)
Q Consensus 144 ~lV~DLDeTLi 154 (957)
.++||+|+||+
T Consensus 3 ~~~~D~Dgtl~ 13 (154)
T TIGR01670 3 LLILDVDGVLT 13 (154)
T ss_pred EEEEeCceeEE
Confidence 47889999999
Done!