BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002167
(957 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 231/835 (27%), Positives = 346/835 (41%), Gaps = 193/835 (23%)
Query: 43 FSFQKHSSLSCEIFQQISRPKMM-------SWKEDADCCSWDGVTCDSATGHVIGLDLSC 95
F SL EI Q IS ++ W + + C++DGVTC V +DLS
Sbjct: 2 FQASPSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDD--KVTSIDLSS 59
Query: 96 SWLH-GNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSI 154
L+ G +SSL L L L L+ + NGS SGF CS + T
Sbjct: 60 KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV--SGFK-----------CSASLTS-- 104
Query: 155 PPSLGNNITQLAYLDLSINSFIGHIPS--SFSNLHQLRHLDLQSN--NFVGKIPASLGNN 210
LDLS NS G + + S + L+ L++ SN +F GK+ L
Sbjct: 105 -------------LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--K 149
Query: 211 ITQLAYLDLSSNSFSG----------------HIPSS---------FSNLQQLCYLDLDD 245
+ L LDLS+NS SG H+ S S L +LD+
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS 209
Query: 246 NHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMF 305
N+F IP LG + + L +LD+S N SG + S +L LN+ N FVG IP +
Sbjct: 210 NNFSTGIPF-LG-DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL- 266
Query: 306 TNLTQLSFLGLAYNELIGSIPSSIFELLN-LTEIYLSFSNFSGSVELYDFAXXXXXXXXX 364
L L +L LA N+ G IP + + LT + LS ++F G+V +
Sbjct: 267 -PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF------------ 313
Query: 365 XXXXXXXXXTKLTANSSFPNLSALDLSACNISEFP-DNLRTQHQLELLDLSENQIGGRIP 423
+ S N S E P D L L++LDLS N+ G +P
Sbjct: 314 ----FGSCSLLESLALSSNNFSG---------ELPMDTLLKMRGLKVLDLSFNEFSGELP 360
Query: 424 SWMWDIGVHTLIELDLSRN-----FLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVS 478
+ ++ +L+ LDLS N L ++ P L+ L+L
Sbjct: 361 ESLTNLSA-SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ----------------- 402
Query: 479 FSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSI 537
NN TG+IP + N S + L LS N LSG IP LG+ S L L L +N +G I
Sbjct: 403 ----NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 538 PQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQV 596
PQ L L L N L G +P L+NC L ++ + NN L+G+IP+ +G L +
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 597 LDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSL------------VNCQYLEV 644
L + N+FSG++P L+ L+LN N G +P ++ +Y+ +
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 645 LDVGNNQ----IDDTFPYWXXXXXXXXXXXXR-----SNRFWG----PIGDTKTRVPFPK 691
+ G + + + R ++R +G P D + F
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF-- 636
Query: 692 LRIMDCSHNQLTGVLP-----LWYLESFKAMMHGNNNSV--EVGYMRLPGSSNYYESIFL 744
+D S+N L+G +P + YL + + S+ EVG +R
Sbjct: 637 ---LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR------------- 680
Query: 745 TMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIP 799
G+++ +DLSSN+ +IP+ + L L +++S+NNL+G IP
Sbjct: 681 ---GLNI-----------LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 188/691 (27%), Positives = 278/691 (40%), Gaps = 121/691 (17%)
Query: 261 TQLAYLDLSSNGFSGHIPS--SFSNLQQLLWLNLEYN--NFVGKIPDMFTNLTQLSFLGL 316
L LDLS N SG + + S + L +LN+ N +F GK+ L L L L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDL 158
Query: 317 AYNELIGS------IPSSIFELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXX 370
+ N + G+ + EL +L +S + SG V++
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDV------------------- 196
Query: 371 XXXTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIG 430
S NL LD+S+ N S L L+ LD+S N++ G +
Sbjct: 197 ---------SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-----FSRA 242
Query: 431 VHTLIELDL----SRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPD--------------- 471
+ T EL L S F+ I LP K+L+YL L N G +PD
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302
Query: 472 -------LPPHM------VSFSISNNSLTGEIP-SSFCNLSSIQYLDLSNNSLSGQIPQC 517
+PP S ++S+N+ +GE+P + + ++ LDLS N SG++P+
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 518 LGN--STLETLDLRMNNFQGSIPQTNAKGCK--LTYLRLSGNHLEGPLPPSLTNCVKLQF 573
L N ++L TLDL NNF G I + K L L L N G +PP+L+NC +L
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 574 LDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPL 632
L + N LSG IP LG+ S L+ L + +N G +PQ L +L L+ N L G +
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Query: 633 PPSLVNCQYLEVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPI----GDTKTRVP 688
P L NC L + + NN++ P W +N F G I GD ++ +
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI- 541
Query: 689 FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESI--FLTM 746
+D + N G +P + + Y++ G L
Sbjct: 542 -----WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 747 KGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNL------------ 794
+GI + L+T +++S + S+ L++S+N L
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 795 ------------TGCIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXXX 842
+G IP + +L L LDLSSNKL GRIP
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 843 EGPIPGGPQFNTFGNDSYSGNSGLCGFPLSK 873
GPIP QF TF + N GLCG+PL +
Sbjct: 717 SGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 116/283 (40%), Gaps = 75/283 (26%)
Query: 91 LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTD--------------- 135
L L + L G IP L ++ L L L FND G +I SG ++
Sbjct: 447 LKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLT 503
Query: 136 --------QFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSF---- 183
+ +L +L L + +F+G+IP LG+ L +LDL+ N F G IP++
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQS 562
Query: 184 ----------------------------SNL--------HQLRHL------DLQSNNFVG 201
NL QL L ++ S + G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 202 KIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT 261
+ NN + +LD+S N SG+IP ++ L L+L N G IP +G+ +
Sbjct: 623 HTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LR 680
Query: 262 QLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDM 304
L LDLSSN G IP + S L L ++L NN G IP+M
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 230/828 (27%), Positives = 345/828 (41%), Gaps = 193/828 (23%)
Query: 50 SLSCEIFQQISRPKMM-------SWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLH-GN 101
SL EI Q IS ++ W + + C++DGVTC V +DLS L+ G
Sbjct: 6 SLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCRDD--KVTSIDLSSKPLNVGF 63
Query: 102 IPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNN 161
+SSL L L L L+ + NGS SGF CS + T
Sbjct: 64 SAVSSSLLSLTGLESLFLSNSHINGS--VSGFK-----------CSASLTS--------- 101
Query: 162 ITQLAYLDLSINSFIGHIPS--SFSNLHQLRHLDLQSN--NFVGKIPASLGNNITQLAYL 217
LDLS NS G + + S + L+ L++ SN +F GK+ L + L L
Sbjct: 102 ------LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--KLNSLEVL 153
Query: 218 DLSSNSFSG----------------HIPSS---------FSNLQQLCYLDLDDNHFVGEI 252
DLS+NS SG H+ S S L +LD+ N+F I
Sbjct: 154 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 213
Query: 253 PASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLS 312
P LG + + L +LD+S N SG + S +L LN+ N FVG IP + L L
Sbjct: 214 PF-LG-DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 269
Query: 313 FLGLAYNELIGSIPSSIFELLN-LTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXX 371
+L LA N+ G IP + + LT + LS ++F G+V +
Sbjct: 270 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF----------------FGS 313
Query: 372 XXTKLTANSSFPNLSALDLSACNISEFP-DNLRTQHQLELLDLSENQIGGRIPSWMWDIG 430
+ S N S E P D L L++LDLS N+ G +P + ++
Sbjct: 314 CSLLESLALSSNNFSG---------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 431 VHTLIELDLSRN-----FLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNS 485
+L+ LDLS N L ++ P L+ L+L NN
Sbjct: 365 A-SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ---------------------NNG 402
Query: 486 LTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKG 544
TG+IP + N S + L LS N LSG IP LG+ S L L L +N +G IPQ
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 545 CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNN 603
L L L N L G +P L+NC L ++ + NN L+G+IP+ +G L +L + N+
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 604 FSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSL------------VNCQYLEVLDVGNNQ 651
FSG++P L+ L+LN N G +P ++ +Y+ + + G +
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 582
Query: 652 ----IDDTFPYWXXXXXXXXXXXXR-----SNRFWG----PIGDTKTRVPFPKLRIMDCS 698
+ + R ++R +G P D + F +D S
Sbjct: 583 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF-----LDMS 637
Query: 699 HNQLTGVLP-----LWYLESFKAMMHGNNNSV--EVGYMRLPGSSNYYESIFLTMKGIDL 751
+N L+G +P + YL + + S+ EVG +R G+++
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR----------------GLNI 681
Query: 752 QMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIP 799
+DLSSN+ +IP+ + L L +++S+NNL+G IP
Sbjct: 682 -----------LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 188/691 (27%), Positives = 279/691 (40%), Gaps = 121/691 (17%)
Query: 261 TQLAYLDLSSNGFSGHIPS--SFSNLQQLLWLNLEYN--NFVGKIPDMFTNLTQLSFLGL 316
L LDLS N SG + + S + L +LN+ N +F GK+ L L L L
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LNSLEVLDL 155
Query: 317 AYNELIGS------IPSSIFELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXX 370
+ N + G+ + EL +L +S + SG V++
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDV------------------- 193
Query: 371 XXXTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIG 430
S NL LD+S+ N S L L+ LD+S N++ G +
Sbjct: 194 ---------SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-----FSRA 239
Query: 431 VHTLIELDL----SRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPD--------------- 471
+ T EL L S F+ I LP K+L+YL L N G +PD
Sbjct: 240 ISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 299
Query: 472 -------LPPHM------VSFSISNNSLTGEIP-SSFCNLSSIQYLDLSNNSLSGQIPQC 517
+PP S ++S+N+ +GE+P + + ++ LDLS N SG++P+
Sbjct: 300 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 359
Query: 518 LGN--STLETLDLRMNNFQGSIPQTNAKGCK--LTYLRLSGNHLEGPLPPSLTNCVKLQF 573
L N ++L TLDL NNF G I + K L L L N G +PP+L+NC +L
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 419
Query: 574 LDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPL 632
L + N LSG IP LG+ S L+ L + +N G +PQ L +L L+ N L G +
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Query: 633 PPSLVNCQYLEVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPI----GDTKTRVP 688
P L NC L + + NN++ P W +N F G I GD ++ +
Sbjct: 480 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI- 538
Query: 689 FPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSN--YYESIFLTM 746
+D + N G +P + + Y++ G + L
Sbjct: 539 -----WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 747 KGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNL------------ 794
+GI + L+T +++S + S+ L++S+N L
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 795 ------------TGCIPSSLRNLTELESLDLSSNKLAGRIPTQXXXXXXXXXXXXXXXXX 842
+G IP + +L L LDLSSNKL GRIP
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 843 EGPIPGGPQFNTFGNDSYSGNSGLCGFPLSK 873
GPIP QF TF + N GLCG+PL +
Sbjct: 714 SGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 116/283 (40%), Gaps = 75/283 (26%)
Query: 91 LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTD--------------- 135
L L + L G IP L ++ L L L FND G +I SG ++
Sbjct: 444 LKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLT 500
Query: 136 --------QFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSF---- 183
+ +L +L L + +F+G+IP LG+ L +LDL+ N F G IP++
Sbjct: 501 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTIPAAMFKQS 559
Query: 184 ----------------------------SNL--------HQLRHL------DLQSNNFVG 201
NL QL L ++ S + G
Sbjct: 560 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 202 KIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT 261
+ NN + +LD+S N SG+IP ++ L L+L N G IP +G+ +
Sbjct: 620 HTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LR 677
Query: 262 QLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDM 304
L LDLSSN G IP + S L L ++L NN G IP+M
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 130/304 (42%), Gaps = 48/304 (15%)
Query: 27 LCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMS-WKEDADCC--SWDGVTCDS 83
LC+ ALLQ K+ + P +S W DCC +W GV CD+
Sbjct: 2 LCNPQDKQALLQIKK----------------DLGNPTTLSSWLPTTDCCNRTWLGVLCDT 45
Query: 84 ATG--HVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLA-FNDFNGSKISSGFTDQFPSL 140
T V LDLS L P SSL LP L L + N+ G + + L
Sbjct: 46 DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA--IAKLTQL 103
Query: 141 TLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFV 200
L + N +G+IP L + I L LD S N+ G +P S S+L L + N
Sbjct: 104 HYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 201 GKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNI 260
G IP S G+ + +S N +G IP +F+NL L ++DL N G+ G++
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK 221
Query: 261 -TQ--------LAY-------------LDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV 298
TQ LA+ LDL +N G +P + L+ L LN+ +NN
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 299 GKIP 302
G+IP
Sbjct: 282 GEIP 285
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 139/317 (43%), Gaps = 39/317 (12%)
Query: 513 QIPQCLGNST-----LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGP--LPPSL 565
QI + LGN T L T D + G + T+ + ++ L LSG +L P +P SL
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72
Query: 566 TNCVKLQFLDVGN-NNLSGQIPECLGNST-LQVLDMRMNNFSGSLPQTFAKSCVLVSLNL 623
N L FL +G NNL G IP + T L L + N SG++P ++ LV+L+
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 624 NGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPIGDT 683
+ N L G LPPS+ + N + TF NR G I D+
Sbjct: 133 SYNALSGTLPPSISSLP---------NLVGITF---------------DGNRISGAIPDS 168
Query: 684 KTRVPFPKLRI-MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESI 742
F KL M S N+LTG +P + A + + N +E L GS + I
Sbjct: 169 YGS--FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 743 FLTMKGI--DLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPS 800
L + DL + +DL +NR +P+ + +L L SLN+S NNL G IP
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 801 SLRNLTELESLDLSSNK 817
NL + ++NK
Sbjct: 287 G-GNLQRFDVSAYANNK 302
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 113/274 (41%), Gaps = 64/274 (23%)
Query: 252 IPASLGNNITQLAYLDL----SSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTN 307
IP+SL N L YL+ N G IP + + L QL +L + + N G IPD +
Sbjct: 68 IPSSLAN----LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 308 LTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXX 367
+ L L +YN L G++P SI L NL I + SG++
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP----------------- 166
Query: 368 XXXXXXTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMW 427
S+ + S L S + +S N++ G+IP
Sbjct: 167 ------------DSYGSFSKLFTS-------------------MTISRNRLTGKIPPTFA 195
Query: 428 DIGVHTLIELDLSRNFL---TSIDHLPWKNLEYLHLDSNSLQGSLPD--LPPHMVSFSIS 482
++ L +DLSRN L S+ KN + +HL NSL L L ++ +
Sbjct: 196 NL---NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252
Query: 483 NNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ 516
NN + G +P L + L++S N+L G+IPQ
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 7/202 (3%)
Query: 455 LEYLHLDSNSLQGSLPDLPPH---MVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
L YL++ ++ G++PD +V+ S N+L+G +P S +L ++ + N +S
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 512 GQIPQCLGN--STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCV 569
G IP G+ ++ + N G IP T A L ++ LS N LEG +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDK 221
Query: 570 KLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLK 629
Q + + N+L+ + + + L LD+R N G+LPQ + L SLN++ N L
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 630 GPLPPSLVNCQYLEVLDVGNNQ 651
G +P N Q +V NN+
Sbjct: 282 GEIPQG-GNLQRFDVSAYANNK 302
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 116/278 (41%), Gaps = 70/278 (25%)
Query: 277 IPSSFSNLQQLLWLNLE-YNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNL 335
IPSS +NL L +L + NN VG IP LTQL +L + + + G+IP + ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 336 TEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLTANSSFPNLSALDLSACNI 395
+ S++ SG++ + SS PNL + I
Sbjct: 128 VTLDFSYNALSGTLP--------------------------PSISSLPNLVGITFDGNRI 161
Query: 396 S-EFPDNLRTQHQL-ELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFL--------- 444
S PD+ + +L + +S N++ G+IP ++ L +DLSRN L
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---NLAFVDLSRNMLEGDASVLFG 218
Query: 445 ----TSIDHLPW-------------KNLEYLHLDSNSLQGSLPDLPPHMV---SFSISNN 484
T HL KNL L L +N + G+LP + S ++S N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 485 SLTGEIPSSFCNLSSIQYLDLS----NNSLSGQ-IPQC 517
+L GEIP ++Q D+S N L G +P C
Sbjct: 279 NLCGEIPQG----GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 109/247 (44%), Gaps = 27/247 (10%)
Query: 490 IPSSFCNLSSIQYLDLSN-NSLSGQIPQCLGNST-LETLDLRMNNFQGSIPQTNAKGCKL 547
IPSS NL + +L + N+L G IP + T L L + N G+IP ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 548 TYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRM--NNFS 605
L S N L G LPPS+++ L + N +SG IP+ G+ + M + N +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 606 GSLPQTFAKSCVLVSLNLNGNRLKGP---LPPSLVNCQYLEV------LDVGNNQIDDTF 656
G +P TFA + L ++L+ N L+G L S N Q + + D+G +
Sbjct: 188 GKIPPTFA-NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246
Query: 657 PYWXXXXXXXXXXXXRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPL-WYLESFK 715
R+NR +G + T++ F L ++ S N L G +P L+ F
Sbjct: 247 ----------NGLDLRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCGEIPQGGNLQRFD 294
Query: 716 AMMHGNN 722
+ NN
Sbjct: 295 VSAYANN 301
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 768 NRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIP 823
N IP + KL L L I+H N++G IP L + L +LD S N L+G +P
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 37/67 (55%)
Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
LT + ++ IP+ + ++ +L +L+ S+N L+G +P S+ +L L + N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 817 KLAGRIP 823
+++G IP
Sbjct: 160 RISGAIP 166
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 104/237 (43%), Gaps = 13/237 (5%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTD-QFPSLTLLDLCS--CNFTGSIPPSLGNNITQLAY 167
P L+ +L F +K + F++ PSL LDL +F G S I+ L Y
Sbjct: 343 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTIS-LKY 401
Query: 168 LDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGH 227
LDLS N I + S+F L QL HLD Q +N S+ ++ L YLD+S
Sbjct: 402 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 460
Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
F+ L L L + N F + + L +LDLS P++F++L L
Sbjct: 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 520
Query: 288 LWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS-------IPSSIFELLNLTE 337
LN+ +NNF + L L L + N ++ S PSS+ LNLT+
Sbjct: 521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL-AFLNLTQ 576
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 29/210 (13%)
Query: 408 LELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI--DHLPWKNLEYLHLDSNSL 465
LE LDLS N + + D G +L LDLS N + ++ + L + LE+L ++L
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 432
Query: 466 QGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL-GNSTLE 524
+ M FS+ F +L ++ YLD+S+ G S+LE
Sbjct: 433 K--------QMSEFSV------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 472
Query: 525 TLDLRMNNFQGS-IPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG 583
L + N+FQ + +P + LT+L LS LE P + + LQ L++ +NN
Sbjct: 473 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532
Query: 584 --QIP-ECLGNSTLQVLDMRMNNFSGSLPQ 610
P +CL ++LQVLD +N+ S Q
Sbjct: 533 LDTFPYKCL--NSLQVLDYSLNHIMTSKKQ 560
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 95/206 (46%), Gaps = 11/206 (5%)
Query: 143 LDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN--NFV 200
L+L +C F G P ++ +L + S G S +L L LDL N +F
Sbjct: 333 LELVNCKF-GQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 386
Query: 201 GKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNI 260
G S I+ L YLDLS N + S+F L+QL +LD ++ S+ ++
Sbjct: 387 GCCSQSDFGTIS-LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444
Query: 261 TQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK-IPDMFTNLTQLSFLGLAYN 319
L YLD+S F+ L L L + N+F +PD+FT L L+FL L+
Sbjct: 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 504
Query: 320 ELIGSIPSSIFELLNLTEIYLSFSNF 345
+L P++ L +L + +S +NF
Sbjct: 505 QLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 88 VIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCS 147
+I LD+S + H + N L L L +A N F + + FT + +LT LDL
Sbjct: 447 LIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQ 503
Query: 148 CNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASL 207
C + P+ N+++ L L++S N+F + L+ L+ LD N+ + L
Sbjct: 504 CQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Query: 208 GNNITQLAYLDLSSNSFS 225
+ + LA+L+L+ N F+
Sbjct: 563 QHFPSSLAFLNLTQNDFA 580
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 778 VGKLNSLKSLNISHNNLTGC-IPSSLRNLTELESLDLSSNKL 818
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 11/203 (5%)
Query: 73 CCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSG 132
CCS D T + LDLS +G I +S+ L +L L+ ++ S
Sbjct: 388 CCSQS----DFGTISLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440
Query: 133 FTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGH-IPSSFSNLHQLRH 191
F +L LD+ S T + N ++ L L ++ NSF + +P F+ L L
Sbjct: 441 FLS-LRNLIYLDI-SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498
Query: 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGE 251
LDL P + N+++ L L++S N+F + L L LD NH +
Sbjct: 499 LDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557
Query: 252 IPASLGNNITQLAYLDLSSNGFS 274
L + + LA+L+L+ N F+
Sbjct: 558 KKQELQHFPSSLAFLNLTQNDFA 580
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 27/164 (16%)
Query: 499 SIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNF-QGSIPQTNAKGCKLTYLRLSGNHL 557
S++YLDLS N + LG LE LD + +N Q S L YL +S H
Sbjct: 398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH- 456
Query: 558 EGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGS-LPQTFAKSC 616
++ F + N G S+L+VL M N+F + LP F +
Sbjct: 457 -----------TRVAFNGIFN-----------GLSSLEVLKMAGNSFQENFLPDIFTELR 494
Query: 617 VLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID--DTFPY 658
L L+L+ +L+ P + + L+VL++ +N DTFPY
Sbjct: 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 26/134 (19%)
Query: 381 SFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
SFP L LDLS C I D ++ L L L+ N I G+ +L +L
Sbjct: 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVA 131
Query: 440 SRNFLTSIDHLP---WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCN 496
L S+++ P K L+ L++ N +Q + ++P F N
Sbjct: 132 VETNLASLENFPIGHLKTLKELNVAHNLIQ--------------------SFKLPEYFSN 171
Query: 497 LSSIQYLDLSNNSL 510
L+++++LDLS+N +
Sbjct: 172 LTNLEHLDLSSNKI 185
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 16/98 (16%)
Query: 724 SVEVGYMRLPGSS---NYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGK 780
S+EV +++ G+S N+ IF ++ + TF +DLS + ++ P
Sbjct: 470 SLEV--LKMAGNSFQENFLPDIFTELRNL---------TF--LDLSQCQLEQLSPTAFNS 516
Query: 781 LNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKL 818
L+SL+ LN+SHNN + L L+ LD S N +
Sbjct: 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 103/237 (43%), Gaps = 13/237 (5%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTD-QFPSLTLLDLCS--CNFTGSIPPSLGNNITQLAY 167
P L+ +L F +K + F++ PSL LDL +F G S T L Y
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS-DFGTTSLKY 377
Query: 168 LDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGH 227
LDLS N I + S+F L QL HLD Q +N S+ ++ L YLD+S
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
F+ L L L + N F + + L +LDLS P++F++L L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 288 LWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS-------IPSSIFELLNLTE 337
LN+ +NNF + L L L + N ++ S PSS+ LNLT+
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL-AFLNLTQ 552
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 29/210 (13%)
Query: 408 LELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI--DHLPWKNLEYLHLDSNSL 465
LE LDLS N + + D G +L LDLS N + ++ + L + LE+L ++L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 466 QGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL-GNSTLE 524
+ M FS+ F +L ++ YLD+S+ G S+LE
Sbjct: 409 K--------QMSEFSV------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 525 TLDLRMNNFQGS-IPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG 583
L + N+FQ + +P + LT+L LS LE P + + LQ L++ +NN
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508
Query: 584 --QIP-ECLGNSTLQVLDMRMNNFSGSLPQ 610
P +CL ++LQVLD +N+ S Q
Sbjct: 509 LDTFPYKCL--NSLQVLDYSLNHIMTSKKQ 536
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 9/205 (4%)
Query: 143 LDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGK 202
L+L +C F G P ++ +L + S G S +L L LDL N K
Sbjct: 309 LELVNCKF-GQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362
Query: 203 IPASLGN-NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT 261
S + T L YLDLS N + S+F L+QL +LD ++ S+ ++
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421
Query: 262 QLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK-IPDMFTNLTQLSFLGLAYNE 320
L YLD+S F+ L L L + N+F +PD+FT L L+FL L+ +
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
Query: 321 LIGSIPSSIFELLNLTEIYLSFSNF 345
L P++ L +L + +S +NF
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 88 VIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCS 147
+I LD+S + H + N L L L +A N F + + FT+ +LT LDL
Sbjct: 423 LIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQ 479
Query: 148 CNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASL 207
C + P+ N+++ L L++S N+F + L+ L+ LD N+ + L
Sbjct: 480 CQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 208 GNNITQLAYLDLSSNSFS 225
+ + LA+L+L+ N F+
Sbjct: 539 QHFPSSLAFLNLTQNDFA 556
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 778 VGKLNSLKSLNISHNNLTGC-IPSSLRNLTELESLDLSSNKL 818
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 11/203 (5%)
Query: 73 CCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSG 132
CCS D T + LDLS +G I +S+ L +L L+ ++ S
Sbjct: 364 CCSQS----DFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 133 FTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGH-IPSSFSNLHQLRH 191
F +L LD+ S T + N ++ L L ++ NSF + +P F+ L L
Sbjct: 417 FLS-LRNLIYLDI-SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGE 251
LDL P + N+++ L L++S N+F + L L LD NH +
Sbjct: 475 LDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533
Query: 252 IPASLGNNITQLAYLDLSSNGFS 274
L + + LA+L+L+ N F+
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDFA 556
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 93/216 (43%), Gaps = 30/216 (13%)
Query: 450 LPWKNLEYLHLDSNSLQGSLPDLP-PHMVSFSISNNSLT--GEIPSSFCNLSSIQYLDLS 506
L K+L+ L SN + ++ P + +S N L+ G S +S++YLDLS
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 507 NNSLSGQIPQCLGNSTLETLDLRMNNF-QGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSL 565
N + LG LE LD + +N Q S L YL +S H
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--------- 432
Query: 566 TNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGS-LPQTFAKSCVLVSLNLN 624
++ F + N G S+L+VL M N+F + LP F + L L+L+
Sbjct: 433 ---TRVAFNGIFN-----------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 625 GNRLKGPLPPSLVNCQYLEVLDVGNNQID--DTFPY 658
+L+ P + + L+VL++ +N DTFPY
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 26/134 (19%)
Query: 381 SFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
SFP L LDLS C I D ++ L L L+ N I G+ +L +L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVA 107
Query: 440 SRNFLTSIDHLP---WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCN 496
L S+++ P K L+ L++ N +Q + ++P F N
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQ--------------------SFKLPEYFSN 147
Query: 497 LSSIQYLDLSNNSL 510
L+++++LDLS+N +
Sbjct: 148 LTNLEHLDLSSNKI 161
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 16/98 (16%)
Query: 724 SVEVGYMRLPGSS---NYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGK 780
S+EV +++ G+S N+ IF ++ + TF +DLS + ++ P
Sbjct: 446 SLEV--LKMAGNSFQENFLPDIFTELRNL---------TF--LDLSQCQLEQLSPTAFNS 492
Query: 781 LNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKL 818
L+SL+ LN+SHNN + L L+ LD S N +
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 93/215 (43%), Gaps = 12/215 (5%)
Query: 132 GFTDQFPSLTLLDLCS--CNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQL 189
G D+ LT L L S +F G S T L YLDLS N I + S+F L QL
Sbjct: 46 GVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQL 103
Query: 190 RHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFV 249
HLD Q +N S+ ++ L YLD+S F+ L L L + N F
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163
Query: 250 GEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLT 309
+ + L +LDLS P++F++L L LN+ +NNF + L
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223
Query: 310 QLSFLGLAYNELIGS-------IPSSIFELLNLTE 337
L L + N ++ S PSS+ LNLT+
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSL-AFLNLTQ 257
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 12/204 (5%)
Query: 148 CNFTG--SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPA 205
CN G S+P + ++ T+L +L N F L QL L L SN K
Sbjct: 14 CNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70
Query: 206 SLGN-NITQLAYLDLSSNSFSGHIP--SSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQ 262
S + T L YLDLS F+G I S+F L+QL +LD ++ S+ ++
Sbjct: 71 SQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127
Query: 263 LAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK-IPDMFTNLTQLSFLGLAYNEL 321
L YLD+S F+ L L L + N+F +PD+FT L L+FL L+ +L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 322 IGSIPSSIFELLNLTEIYLSFSNF 345
P++ L +L + +S +NF
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 94/211 (44%), Gaps = 34/211 (16%)
Query: 458 LHLDSNSLQGSLP----DLPPHMVSFSISNNSLT--GEIPSSFCNLSSIQYLDLSNNSLS 511
L L+SN LQ SLP D + S+S+N L+ G S +S++YLDLS N +
Sbjct: 33 LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 512 GQIPQCLGNSTLETLDLRMNNF-QGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVK 570
LG LE LD + +N Q S L YL +S H +
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH------------TR 139
Query: 571 LQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGS-LPQTFAKSCVLVSLNLNGNRLK 629
+ F + N G S+L+VL M N+F + LP F + L L+L+ +L+
Sbjct: 140 VAFNGIFN-----------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 630 GPLPPSLVNCQYLEVLDVGNNQID--DTFPY 658
P + + L+VL++ +N DTFPY
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Query: 88 VIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCS 147
+I LD+S H + N L L L +A N F + + FT+ +LT LDL
Sbjct: 128 LIYLDIS--HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQ 184
Query: 148 CNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASL 207
C + P+ N+++ L L++S N+F + L+ L+ LD N+ + L
Sbjct: 185 CQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Query: 208 GNNITQLAYLDLSSNSFS 225
+ + LA+L+L+ N F+
Sbjct: 244 QHFPSSLAFLNLTQNDFA 261
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNG--FSGHIPSSFSNLQ 285
IPSS + L +L+ N + +P + + +TQL L LSSNG F G S
Sbjct: 26 IPSSATRL------ELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 286 QLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF-ELLNLTEIYLSFSN 344
L +L+L +N + + F L QL L ++ L S+F L NL IYL S+
Sbjct: 79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL--IYLDISH 135
Query: 345 FSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLTANSSFPNLSALDLSACNISEF-----P 399
T++ N F LS+L++ + F P
Sbjct: 136 ---------------------------THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168
Query: 400 DNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLH 459
D L LDLS+ Q+ P+ + +L L++S N S+D P+K L L
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLS--SLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 460 LDSNSL 465
+ SL
Sbjct: 227 VLDYSL 232
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 11/203 (5%)
Query: 73 CCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSG 132
CCS D T + LDLS +G I +S+ L +L L+ ++ S
Sbjct: 69 CCSQS----DFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121
Query: 133 FTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGH-IPSSFSNLHQLRH 191
F +L LD+ S T + N ++ L L ++ NSF + +P F+ L L
Sbjct: 122 FLS-LRNLIYLDI-SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Query: 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGE 251
LDL P + N+++ L L++S N+F + L L LD NH +
Sbjct: 180 LDLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
Query: 252 IPASLGNNITQLAYLDLSSNGFS 274
L + + LA+L+L+ N F+
Sbjct: 239 KKQELQHFPSSLAFLNLTQNDFA 261
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 16/98 (16%)
Query: 724 SVEVGYMRLPGSS---NYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGK 780
S+EV +++ G+S N+ IF ++ + TF +DLS + ++ P
Sbjct: 151 SLEV--LKMAGNSFQENFLPDIFTELRNL---------TF--LDLSQCQLEQLSPTAFNS 197
Query: 781 LNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKL 818
L+SL+ LN+SHNN + L L+ LD S N +
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 96/220 (43%), Gaps = 7/220 (3%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTD-QFPSLTLLDLCS--CNFTGSIPPSLGNNITQLAY 167
P L+ +L F +K + F++ PSL LDL +F G S T L Y
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS-DFGTTSLKY 377
Query: 168 LDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGH 227
LDLS N I + S+F L QL HLD Q +N S+ ++ L YLD+S
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
F+ L L L + N F + + L +LDLS P++F++L L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 288 LWLNLEYNNFVGKIPD-MFTNLTQLSFLGLAYNELIGSIP 326
LN+ N + +PD +F LT L + L N S P
Sbjct: 497 QVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 27/209 (12%)
Query: 408 LELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSI--DHLPWKNLEYLHLDSNSL 465
LE LDLS N + + D G +L LDLS N + ++ + L + LE+L ++L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 466 QGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL-GNSTLE 524
+ M FS+ F +L ++ YLD+S+ G S+LE
Sbjct: 409 K--------QMSEFSV------------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 525 TLDLRMNNFQGS-IPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG 583
L + N+FQ + +P + LT+L LS LE P + + LQ L++ +N L
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508
Query: 584 QIPECLGN--STLQVLDMRMNNFSGSLPQ 610
+P+ + + ++LQ + + N + S P+
Sbjct: 509 -VPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 13/190 (6%)
Query: 143 LDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGK 202
L+L +C F G P ++ +L + S G S +L L LDL N K
Sbjct: 309 LELVNCKF-GQFPTLKLKSLKRLTF-----TSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362
Query: 203 IPASLGN-NITQLAYLDLSSNSFSGHIP--SSFSNLQQLCYLDLDDNHFVGEIPASLGNN 259
S + T L YLDLS F+G I S+F L+QL +LD ++ S+ +
Sbjct: 363 GCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 260 ITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK-IPDMFTNLTQLSFLGLAY 318
+ L YLD+S F+ L L L + N+F +PD+FT L L+FL L+
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 319 NELIGSIPSS 328
+L P++
Sbjct: 480 CQLEQLSPTA 489
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 778 VGKLNSLKSLNISHNNLTGC-IPSSLRNLTELESLDLSSNKL 818
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 90/208 (43%), Gaps = 28/208 (13%)
Query: 450 LPWKNLEYLHLDSNSLQGSLPDLP-PHMVSFSISNNSLT--GEIPSSFCNLSSIQYLDLS 506
L K+L+ L SN + ++ P + +S N L+ G S +S++YLDLS
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 507 NNSLSGQIPQCLGNSTLETLDLRMNNF-QGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSL 565
N + LG LE LD + +N Q S L YL +S H
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--------- 432
Query: 566 TNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGS-LPQTFAKSCVLVSLNLN 624
++ F + N G S+L+VL M N+F + LP F + L L+L+
Sbjct: 433 ---TRVAFNGIFN-----------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 625 GNRLKGPLPPSLVNCQYLEVLDVGNNQI 652
+L+ P + + L+VL++ +NQ+
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 26/134 (19%)
Query: 381 SFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
SFP L LDLS C I D ++ L L L+ N I G+ +L +L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVA 107
Query: 440 SRNFLTSIDHLP---WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCN 496
L S+++ P K L+ L++ N +Q + ++P F N
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQ--------------------SFKLPEYFSN 147
Query: 497 LSSIQYLDLSNNSL 510
L+++++LDLS+N +
Sbjct: 148 LTNLEHLDLSSNKI 161
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 96/215 (44%), Gaps = 12/215 (5%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTD-QFPSLTLLDLC--SCNFTGSIPPS-LGNNITQLA 166
LP L+ L L N K S F PSL+ LDL + +F+G S LG N L
Sbjct: 327 LPFLKSLTLTMN-----KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN--SLR 379
Query: 167 YLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG 226
+LDLS N I + ++F L +L+HLD Q + S ++ +L YLD+S +
Sbjct: 380 HLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438
Query: 227 HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQ 286
F L L L + N F +++ N T L +LDLS F L +
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498
Query: 287 LLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL 321
L LN+ +NN + + L LS L ++N +
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 62/260 (23%)
Query: 214 LAYLDLSSNSFSGHIPSSFSNL--QQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN 271
L+YLDLS N+ S S+S+L L +LDL N + +G + +L +LD +
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG--LEELQHLDFQHS 409
Query: 272 GFSGHIP-SSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF 330
S+F +L++LL+L++ Y N +F LT L+ L +A N + S++F
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469
Query: 331 ELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLTANSSFPNLSALDL 390
AN++ NL+ LDL
Sbjct: 470 -----------------------------------------------ANTT--NLTFLDL 480
Query: 391 SACNISEFP-DNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTS--- 446
S C + + T H+L+LL++S N + + S ++ +++L LD S N + +
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYN-QLYSLSTLDCSFNRIETSKG 538
Query: 447 -IDHLPWKNLEYLHLDSNSL 465
+ H P K+L + +L +NS+
Sbjct: 539 ILQHFP-KSLAFFNLTNNSV 557
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 778 VGKLNSLKSLNISHNNLTGC-IPSSLRNLTELESLDLSSN 816
+G+L +LK LN++HN + C +P+ NLT L +DLS N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 91 LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
+D S + +IPS++ + ++L+FN K S F++ F L LDL C
Sbjct: 19 MDQKLSKVPDDIPSST--------KNIDLSFNPLKILK-SYSFSN-FSELQWLDLSRCEI 68
Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNN 210
+I + + L+ L L+ N P SFS L L +L +G
Sbjct: 69 E-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 127
Query: 211 ITQLAYLDLSSNSF-SGHIPSSFSNLQQLCYLDLDDNH 247
IT L L+++ N S +P+ FSNL L ++DL N+
Sbjct: 128 IT-LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 26/194 (13%)
Query: 449 HLPWKNLEYLHLDSNSLQGSLPDLP----PHMVSFSISNNSLTGEIPSSFCNLSSIQYLD 504
H W++L + + L P P + S +++ N G I L S+ YLD
Sbjct: 306 HFKWQSLSII-------RCQLKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLD 356
Query: 505 LSNNSLSGQIPQC-----LGNSTLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGNHLE 558
LS N+LS C LG ++L LDL N I N G +L +L + L+
Sbjct: 357 LSRNALS--FSGCCSYSDLGTNSLRHLDLSFNG--AIIMSANFMGLEELQHLDFQHSTLK 412
Query: 559 GPLP-PSLTNCVKLQFLDVGNNNLSGQIPEC-LGNSTLQVLDMRMNNFS-GSLPQTFAKS 615
+ + KL +LD+ N LG ++L L M N+F +L FA +
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472
Query: 616 CVLVSLNLNGNRLK 629
L L+L+ +L+
Sbjct: 473 TNLTFLDLSKCQLE 486
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 758 TTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNK 817
T +DLS + ++ V L+ L+ LN+SHNNL S L L +LD S N+
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532
Query: 818 L 818
+
Sbjct: 533 I 533
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 96/215 (44%), Gaps = 12/215 (5%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTD-QFPSLTLLDLC--SCNFTGSIPPS-LGNNITQLA 166
LP L+ L L N K S F PSL+ LDL + +F+G S LG N L
Sbjct: 322 LPFLKSLTLTMN-----KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN--SLR 374
Query: 167 YLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG 226
+LDLS N I + ++F L +L+HLD Q + S ++ +L YLD+S +
Sbjct: 375 HLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 433
Query: 227 HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQ 286
F L L L + N F +++ N T L +LDLS F L +
Sbjct: 434 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 493
Query: 287 LLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL 321
L LN+ +NN + + L LS L ++N +
Sbjct: 494 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 114/261 (43%), Gaps = 64/261 (24%)
Query: 214 LAYLDLSSNSFSGHIPSSFSNL--QQLCYLDLDDNHFVGEIPASLG-NNITQLAYLDLSS 270
L+YLDLS N+ S S+S+L L +LDL F G I S + +L +LD
Sbjct: 347 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS---FNGAIIMSANFMGLEELQHLDFQH 403
Query: 271 NGFSGHIP-SSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSI 329
+ S+F +L++LL+L++ Y N +F LT L+ L +A N + S++
Sbjct: 404 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 463
Query: 330 FELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLTANSSFPNLSALD 389
F AN++ NL+ LD
Sbjct: 464 F-----------------------------------------------ANTT--NLTFLD 474
Query: 390 LSACNISEFP-DNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTS-- 446
LS C + + T H+L+LL++S N + + S ++ +++L LD S N + +
Sbjct: 475 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYN-QLYSLSTLDCSFNRIETSK 532
Query: 447 --IDHLPWKNLEYLHLDSNSL 465
+ H P K+L + +L +NS+
Sbjct: 533 GILQHFP-KSLAFFNLTNNSV 552
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 778 VGKLNSLKSLNISHNNLTGC-IPSSLRNLTELESLDLSSN 816
+G+L +LK LN++HN + C +P+ NLT L +DLS N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 13/158 (8%)
Query: 91 LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150
+D S + +IPS++ + ++L+FN K S F++ F L LDL C
Sbjct: 14 MDQKLSKVPDDIPSST--------KNIDLSFNPLKILK-SYSFSN-FSELQWLDLSRCEI 63
Query: 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNN 210
+I + + L+ L L+ N P SFS L L +L +G
Sbjct: 64 E-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 122
Query: 211 ITQLAYLDLSSNSF-SGHIPSSFSNLQQLCYLDLDDNH 247
IT L L+++ N S +P+ FSNL L ++DL N+
Sbjct: 123 IT-LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 159
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 26/194 (13%)
Query: 449 HLPWKNLEYLHLDSNSLQGSLPDLP----PHMVSFSISNNSLTGEIPSSFCNLSSIQYLD 504
H W++L + + L P P + S +++ N G I L S+ YLD
Sbjct: 301 HFKWQSLSII-------RCQLKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLD 351
Query: 505 LSNNSLSGQIPQC-----LGNSTLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGNHLE 558
LS N+LS C LG ++L LDL N I N G +L +L + L+
Sbjct: 352 LSRNALS--FSGCCSYSDLGTNSLRHLDLSFNG--AIIMSANFMGLEELQHLDFQHSTLK 407
Query: 559 GPLP-PSLTNCVKLQFLDVGNNNLSGQIPEC-LGNSTLQVLDMRMNNFS-GSLPQTFAKS 615
+ + KL +LD+ N LG ++L L M N+F +L FA +
Sbjct: 408 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 467
Query: 616 CVLVSLNLNGNRLK 629
L L+L+ +L+
Sbjct: 468 TNLTFLDLSKCQLE 481
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 758 TTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNK 817
T +DLS + ++ V L+ L+ LN+SHNNL S L L +LD S N+
Sbjct: 468 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 527
Query: 818 L 818
+
Sbjct: 528 I 528
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
LDL SN S +F L +L L L+DN +PA + + L L ++ N
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNL 335
F L L L L+ N P +F +LT+L++L L YNEL S+P +F+ L +L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSL 159
Query: 336 TEIYL 340
E+ L
Sbjct: 160 KELRL 164
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 21/194 (10%)
Query: 145 LCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIP 204
+CSCN NN + + + +IP+ + LDLQSN +P
Sbjct: 11 VCSCN----------NNKNSVDCSSKKLTAIPSNIPADT------KKLDLQSNKL-SSLP 53
Query: 205 ASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLA 264
+ + +T+L L L+ N F L+ L L + DN +P + + + LA
Sbjct: 54 SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLA 112
Query: 265 YLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS 324
L L N P F +L +L +L+L YN +F LT L L L YN +
Sbjct: 113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL-YNNQLKR 171
Query: 325 IPSSIFELLNLTEI 338
+P F+ LTE+
Sbjct: 172 VPEGAFD--KLTEL 183
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 132 GFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRH 191
G DQ +L L L N S+PP + +++T+L YL L N F L L+
Sbjct: 103 GVFDQLVNLAELRL-DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161
Query: 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDN 246
L L NN + ++P + +T+L L L +N +F +L++L L L +N
Sbjct: 162 LRLY-NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
LT + L N Q V KL SLK L + +N L + LTEL++L L +N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191
Query: 817 KLAGRIP 823
+L R+P
Sbjct: 192 QLK-RVP 197
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 266 LDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSI 325
LDL S G + ++F L +L WLNL+YN +F +LT+L LGLA N+L S+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98
Query: 326 PSSIFE-LLNLTEIYL 340
P +F+ L L ++YL
Sbjct: 99 PLGVFDHLTQLDKLYL 114
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 162 ITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSS 221
+T+L +L+L N F +L +L L L +NN + +P + +++TQL L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL-ANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 222 NSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSF 281
N F L +L L L+ N IPA + +T L L LS+N +F
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 282 SNLQQLLWLNLEYNNF 297
L +L + L N F
Sbjct: 176 DRLGKLQTITLFGNQF 191
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 4/145 (2%)
Query: 104 SNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNIT 163
S+++ L +L LNL +N +S+G D L L L + N S+P + +++T
Sbjct: 51 SDATFRGLTKLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGLAN-NQLASLPLGVFDHLT 107
Query: 164 QLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNS 223
QL L L N F L +L+ L L +N IPA + +T L L LS+N
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ 166
Query: 224 FSGHIPSSFSNLQQLCYLDLDDNHF 248
+F L +L + L N F
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 266 LDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSI 325
LDL S G + ++F L +L WLNL+YN +F +LT+L LGLA N+L S+
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASL 98
Query: 326 PSSIFE-LLNLTEIYL 340
P +F+ L L ++YL
Sbjct: 99 PLGVFDHLTQLDKLYL 114
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 162 ITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSS 221
+T+L +L+L N F +L +L L L +NN + +P + +++TQL L L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL-ANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 222 NSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSF 281
N F L +L L L+ N IPA + +T L L LS+N +F
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 282 SNLQQLLWLNLEYNNF 297
L +L + L N F
Sbjct: 176 DRLGKLQTITLFGNQF 191
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 4/145 (2%)
Query: 104 SNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNIT 163
S+++ L +L LNL +N +S+G D L L L + N S+P + +++T
Sbjct: 51 SDATFRGLTKLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGLAN-NQLASLPLGVFDHLT 107
Query: 164 QLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNS 223
QL L L N F L +L+ L L +N IPA + +T L L LS+N
Sbjct: 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQ 166
Query: 224 FSGHIPSSFSNLQQLCYLDLDDNHF 248
+F L +L + L N F
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFGNQF 191
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 213 QLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNG 272
Q YLDL +NS F L L L L N +P + N +T L YL+LS+N
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 273 FSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE- 331
F L QL L L N +F LTQL L L N+L S+P +F+
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDR 146
Query: 332 LLNLTEIYL 340
L +L I+L
Sbjct: 147 LTSLQYIWL 155
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 55/126 (43%), Gaps = 2/126 (1%)
Query: 129 ISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQ 188
+ +G D+ SLT L L N S+P + N +T L YL+LS N F L Q
Sbjct: 43 LPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101
Query: 189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHF 248
L+ L L +N +P + + +TQL L L N F L L Y+ L DN +
Sbjct: 102 LKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160
Query: 249 VGEIPA 254
P
Sbjct: 161 DCTCPG 166
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 732 LPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISH 791
+P + Y + ++K + + LT+ + L N+ Q V KL SL LN+S
Sbjct: 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85
Query: 792 NNLTGCIPSSLRNLTELESLDLSSNKL 818
N L LT+L+ L L++N+L
Sbjct: 86 NQLQSLPNGVFDKLTQLKELALNTNQL 112
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
LT+ ++LS+N+ Q V KL LK L ++ N L LT+L+ L L N
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Query: 817 KL 818
+L
Sbjct: 135 QL 136
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 80/199 (40%), Gaps = 10/199 (5%)
Query: 135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL 194
D F +L + T ++ + N+I Q+ + I S G L +R+L L
Sbjct: 16 DAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVRYLAL 70
Query: 195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPA 254
N S +T L YL L+ N F L L L L +N +P
Sbjct: 71 GGNKLHD---ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPD 126
Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFL 314
+ + +T L YL+L+ N F L L L+L YN +F LTQL L
Sbjct: 127 GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186
Query: 315 GLAYNELIGSIPSSIFELL 333
L N+L S+P +F+ L
Sbjct: 187 RLYQNQL-KSVPDGVFDRL 204
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 260 ITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD-MFTNLTQLSFLGLAY 318
+T L YL L+ N F L L L L N + +PD +F LT L++L LA+
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL-VENQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 319 NELIGSIPSSIFE-LLNLTEIYLSFSNF 345
N+L S+P +F+ L NLTE+ LS++
Sbjct: 143 NQL-QSLPKGVFDKLTNLTELDLSYNQL 169
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 118 NLAFNDFNGSKISS---GFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINS 174
NL + G+++ S G D+ +L L L N S+P + + +T L YL+L+ N
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 175 FIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSN 234
F L L LDL S N + +P + + +TQL L L N F
Sbjct: 145 LQSLPKGVFDKLTNLTELDL-SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 203
Query: 235 LQQLCYLDLDDN 246
L L Y+ L DN
Sbjct: 204 LTSLQYIWLHDN 215
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
LT + L N+ Q V KL +L LN++HN L LT L LDLS N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 817 KL 818
+L
Sbjct: 168 QL 169
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
LT ++L+ N+ Q V KL +L L++S+N L LT+L+ L L N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 817 KL 818
+L
Sbjct: 192 QL 193
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 13/165 (7%)
Query: 439 LSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLS 498
+++N L SID + N D S+QG P++ ++ N L S+ L+
Sbjct: 35 VTQNELNSIDQIIANNS-----DIKSVQGI--QYLPNVRYLALGGNKLHD--ISALKELT 85
Query: 499 SIQYLDLSNNSLSGQIPQCLGN--STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNH 556
++ YL L+ N L +P + + + L+ L L N Q K LTYL L+ N
Sbjct: 86 NLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 557 LEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRM 601
L+ L LD+ N L +PE + + Q+ D+R+
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRL 188
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 66/157 (42%), Gaps = 1/157 (0%)
Query: 198 NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG 257
N + +PA+ + L L L SN+ +G ++F+ L L LDL DN + + +
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLA 317
+ L L L G P F L L +L L+ NN + F +L L+ L L
Sbjct: 101 RGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLH 160
Query: 318 YNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDF 354
N I S+P F L+ + L N V + F
Sbjct: 161 GNR-IPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAF 196
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
Query: 143 LDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGK 202
LD C G P L + L YL L N+ ++F +L L HL L N +
Sbjct: 111 LDRCGLQELG---PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNR-IPS 166
Query: 203 IPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQ 262
+P + L L L N + P +F +L +L L L N+ + +PA + +
Sbjct: 167 VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANN-LSMLPAEVLVPLRS 225
Query: 263 LAYLDLSSN 271
L YL L+ N
Sbjct: 226 LQYLRLNDN 234
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 19/181 (10%)
Query: 481 ISNNSLTGEIPSSFCNLSSIQYLDLSNNS-LSGQIPQCL-GNSTLETLDLRMNNFQGSIP 538
+ +N+L G ++F L+ ++ LDLS+N+ L P G L TL L Q P
Sbjct: 62 LHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGP 121
Query: 539 QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGN-------NNLSGQIPECL-- 589
L YL L N+L+ LP + F D+GN N +PE
Sbjct: 122 GLFRGLAALQYLYLQDNNLQA-LPDN-------TFRDLGNLTHLFLHGNRIPSVPEHAFR 173
Query: 590 GNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGN 649
G +L L + N+ + P F L++L L N L LV + L+ L + +
Sbjct: 174 GLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
Query: 650 N 650
N
Sbjct: 234 N 234
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 104/246 (42%), Gaps = 30/246 (12%)
Query: 78 GVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQF 137
G C ++ LDLS S + + N L L L+ LNL++N+ G + +
Sbjct: 341 GTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLG--LEDQAFKEC 398
Query: 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN 197
P L LLD+ + P S N+ L L+LS + L LRHL+LQ N
Sbjct: 399 PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGN 458
Query: 198 NFV-GKIPAS-LGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255
+F G I + L + L L LSS + L +D F G
Sbjct: 459 SFQDGSISKTNLLQMVGSLEILILSSCNL----------------LSIDQQAFHG----- 497
Query: 256 LGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLG 315
+ + +LDLS N +G + S+L+ L+LN+ NN P + L+Q S +
Sbjct: 498 ----LRNVNHLDLSHNSLTGDSMDALSHLKG-LYLNMASNNIRIIPPHLLPALSQQSIIN 552
Query: 316 LAYNEL 321
L++N L
Sbjct: 553 LSHNPL 558
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 4/160 (2%)
Query: 181 SSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCY 240
S+F +++ LDL + + G +P+ + + L L L++NSF + ++ L
Sbjct: 271 STFRCFTRVQELDLTAAHLNG-LPSGI-EGMNSLKKLVLNANSFDQLCQINAASFPSLRD 328
Query: 241 LDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH--IPSSFSNLQQLLWLNLEYNNFV 298
L + N ++ + L LDLS + NL+ L +LNL YN +
Sbjct: 329 LYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPL 388
Query: 299 GKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEI 338
G F QL L +A+ L P S F+ L+L +
Sbjct: 389 GLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRV 428
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 28/273 (10%)
Query: 567 NCVKLQFLDVGNNNLSG-QIPECLGNSTLQVLDMRMN--NFSGSLPQTFAKSCVLVSLNL 623
N L+ L +G+N++S +PE L+VLD + N ++ + +SLN
Sbjct: 126 NLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNF 185
Query: 624 NGNRLKGPLPPSLVNCQYLEVLDVGNN----------QIDDTFPYWXXXXXXXXXXXXRS 673
NGN +KG P + ++ + + L G + Q W S
Sbjct: 186 NGNDIKGIEPGAFIS-KIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTS 244
Query: 674 NRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLP 733
F G + + K R D S + + L+ A ++G + +E
Sbjct: 245 ATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLPSGIE------- 297
Query: 734 GSSNYYESIFLTMKGIDLQMERILTTFATI-DLSSNRFQRKI---PEVVGKLNSLKSLNI 789
N + + L D + +F ++ DL RK+ + KL +L+ L++
Sbjct: 298 -GMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDL 356
Query: 790 SHNNLTG--CIPSSLRNLTELESLDLSSNKLAG 820
SH+++ C L+NL L+ L+LS N+ G
Sbjct: 357 SHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLG 389
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 407 QLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFL-TSIDHL--PWKNLEYLHLDSN 463
QLELLD++ + + P + +H L L+LS L TS HL ++L +L+L N
Sbjct: 400 QLELLDVAFTHLHVKAPHSPFQ-NLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGN 458
Query: 464 SLQG---SLPDLPPHMVSFSI---SNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQC 517
S Q S +L + S I S+ +L +F L ++ +LDLS+NSL+G
Sbjct: 459 SFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDA 518
Query: 518 LGNSTLETLDLRMNNFQ 534
L + L++ NN +
Sbjct: 519 LSHLKGLYLNMASNNIR 535
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 160/391 (40%), Gaps = 71/391 (18%)
Query: 189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCY-------- 240
LR LDL SN P I +L L L++ + H+ ++LC+
Sbjct: 173 LRKLDLSSNPLKEFSPGCF-QTIGKLFALLLNNAQLNPHLT------EKLCWELSNTSIQ 225
Query: 241 -LDLDDNHFVGEIPASL-GNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV 298
L L +N + ++ G T L LDLS N SFS L L +L+LEYNN
Sbjct: 226 NLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQ 285
Query: 299 GKIPDMFTNLTQLSFLGL--AYNELIGSIPS------------SIFELLNLTE--IYLSF 342
P F L+ L +L L A+ + S+ S E LN+ + I +
Sbjct: 286 RLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTK 345
Query: 343 SN-FSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLTANSSFPNLS-----ALDLSACNIS 396
SN F+G V L + + N +F +L+ L+L+ +IS
Sbjct: 346 SNTFTGLVSLKYLSLSKTFTSL-----------QTLTNETFVSLAHSPLLTLNLTKNHIS 394
Query: 397 EFPD-NLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNL 455
+ + QL +LDL N+I ++ W G+ + E+ LS N
Sbjct: 395 KIANGTFSWLGQLRILDLGLNEIEQKLSGQEWR-GLRNIFEIYLSYN------------- 440
Query: 456 EYLHLDSNSLQGSLPDLPPHMV-SFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQI 514
+YL L ++S +P L M+ ++ N ++ PS F L ++ LDLSNN+++
Sbjct: 441 KYLQLSTSSF-ALVPSLQRLMLRRVALKNVDIS---PSPFRPLRNLTILDLSNNNIANIN 496
Query: 515 PQCL-GNSTLETLDLRMNNFQGSIPQTNAKG 544
L G LE LD + NN + N G
Sbjct: 497 EDLLEGLENLEILDFQHNNLARLWKRANPGG 527
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 117/438 (26%), Positives = 175/438 (39%), Gaps = 58/438 (13%)
Query: 114 LRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNN----ITQLAYLD 169
++ L+LA N + S+ ++ +LT LDL N +GN + L YL
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHD-----VGNGSFSYLPSLRYLS 278
Query: 170 LSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIP 229
L N+ P SF L LR+L L+ + + NI
Sbjct: 279 LEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDF--------------- 323
Query: 230 SSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT---QLAYLDLSSNGFSGHIPS--SFSNL 284
SF L+ L YL++DDN+ IP++ N T L YL LS S + +F +L
Sbjct: 324 -SFQWLKYLEYLNMDDNN----IPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSL 378
Query: 285 QQ--LLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLS 341
LL LNL N+ F+ L QL L L NE+ + + L N+ EIYLS
Sbjct: 379 AHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLS 438
Query: 342 FSNFSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLTANSSF---PNLSALDLSACNISEF 398
++ + ++L + + S F NL+ LDLS NI+
Sbjct: 439 YNKY---LQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANI 495
Query: 399 -PDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEY 457
D L LE+LD N + +W NFL + HL NLE
Sbjct: 496 NEDLLEGLENLEILDFQHNNLAR-----LWKRA-----NPGGPVNFLKGLSHLHILNLES 545
Query: 458 LHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQC 517
LD + G +L + S ++ N+L P F + +S++ L+L N ++
Sbjct: 546 NGLDEIPV-GVFKNL-FELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKNLITSVEKDV 603
Query: 518 LGN--STLETLDLRMNNF 533
G L +LD+R N F
Sbjct: 604 FGPPFQNLNSLDMRFNPF 621
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 101/246 (41%), Gaps = 41/246 (16%)
Query: 135 DQFPS-LTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLD 193
D PS +T+L+L + N +PP+ +QLA LD NS P L L+ L+
Sbjct: 21 DDLPSNITVLNL-THNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLN 79
Query: 194 LQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIP 253
LQ N + +I T L LDL SNS + F N + L LDL N G
Sbjct: 80 LQHNE-LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN---GLSS 135
Query: 254 ASLGNNI----------------------------TQLAYLDLSSNGFSGHIPSSFSNLQ 285
LG + + L LDLSSN P F +
Sbjct: 136 TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIG 195
Query: 286 QLLWL---NLEYN-NFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSI--FELLNLTEIY 339
+L L N + N + K+ +N T + L LA N+L+ + S+ + NLT++
Sbjct: 196 KLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSLANNQLLATSESTFSGLKWTNLTQLD 254
Query: 340 LSFSNF 345
LS++N
Sbjct: 255 LSYNNL 260
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 97/427 (22%), Positives = 162/427 (37%), Gaps = 64/427 (14%)
Query: 249 VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNL 308
+ IP L +NIT L+L+ N P++F+ QL L+ +N+ P++ L
Sbjct: 16 LTHIPDDLPSNIT---VLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQIL 72
Query: 309 TQLSFLGLAYNELIGSIPSSIFELLNLTEIYL-----------SFSNFSGSVEL------ 351
L L L +NEL + NLTE+ L F N ++L
Sbjct: 73 PLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNG 132
Query: 352 ----------YDFAXXXXXXXXXXXXXXXXXXTKLTANSSFPNLSALDLSACNISEF-PD 400
+ NSS L LDLS+ + EF P
Sbjct: 133 LSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSS---LRKLDLSSNPLKEFSPG 189
Query: 401 NLRTQHQLELLDLSENQIGGRIPSWM-WDIGVHTLIELDLSRNFL-----TSIDHLPWKN 454
+T +L L L+ Q+ + + W++ ++ L L+ N L ++ L W N
Sbjct: 190 CFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTN 249
Query: 455 LEYLHLDSNSLQ----GSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSL 510
L L L N+L GS LP + S+ N++ P SF LS+++YL L +
Sbjct: 250 LTQLDLSYNNLHDVGNGSFSYLPS-LRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK-RAF 307
Query: 511 SGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVK 570
+ Q + ++ + + L YL + N++ + T V
Sbjct: 308 TKQSVSLASHPNIDDFSFQWLKY-------------LEYLNMDDNNIPSTKSNTFTGLVS 354
Query: 571 LQFLDVGN-----NNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNG 625
L++L + L+ + L +S L L++ N+ S TF+ L L+L
Sbjct: 355 LKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGL 414
Query: 626 NRLKGPL 632
N ++ L
Sbjct: 415 NEIEQKL 421
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 547 LTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPE-CLGNSTLQVLDMRMNNFS 605
+T L L+ N L P + T +L LD G N++S PE C L+VL+++ N S
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 606 GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDT 655
QTF L L+L N + N + L LD+ +N + T
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 85/374 (22%), Positives = 131/374 (35%), Gaps = 64/374 (17%)
Query: 471 DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ-CLGNSTLETLDLR 529
DLP ++ ++++N L P++F S + LD NS+S P+ C L+ L+L+
Sbjct: 22 DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 530 MNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG------ 583
N QT LT L L N + N L LD+ +N LS
Sbjct: 82 HNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTG 141
Query: 584 ---------------------QIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLN 622
+ E LGNS+L+ LD+ N P F L +L
Sbjct: 142 VQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALL 201
Query: 623 LNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPIGD 682
LN +L L L W +N+
Sbjct: 202 LNNAQLNPHLTEKLC---------------------WELSNTSIQNLSLANNQLLATSES 240
Query: 683 TKTRVPFPKLRIMDCSHNQL--TGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYE 740
T + + + L +D S+N L G YL S + + NN + G SN
Sbjct: 241 TFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLR- 299
Query: 741 SIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPS 800
+L++K + L + ID S ++ L L+ LN+ NN+ +
Sbjct: 300 --YLSLKRAFTKQSVSLASHPNIDDFSFQW----------LKYLEYLNMDDNNIPSTKSN 347
Query: 801 SLRNLTELESLDLS 814
+ L L+ L LS
Sbjct: 348 TFTGLVSLKYLSLS 361
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 99/247 (40%), Gaps = 13/247 (5%)
Query: 114 LRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSIN 173
L LNL N SKI++G L +LDL + + + + LS N
Sbjct: 383 LLTLNLTKNHI--SKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYN 440
Query: 174 SFIGHIPSSFSNLHQLRHLDLQSNNFVG-KIPASLGNNITQLAYLDLSSNSFSGHIPSSF 232
++ SSF+ + L+ L L+ I S + L LDLS+N+ +
Sbjct: 441 KYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLL 500
Query: 233 SNLQQLCYLDLDDNHFVGEI-------PASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQ 285
L+ L LD N+ P + ++ L L+L SNG F NL
Sbjct: 501 EGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLF 560
Query: 286 QLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF--ELLNLTEIYLSFS 343
+L +NL NN P +F + T L L L N LI S+ +F NL + + F+
Sbjct: 561 ELKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKN-LITSVEKDVFGPPFQNLNSLDMRFN 619
Query: 344 NFSGSVE 350
F + E
Sbjct: 620 PFDCTCE 626
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 148/633 (23%), Positives = 239/633 (37%), Gaps = 71/633 (11%)
Query: 210 NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS 269
N+ ++L L+ HIP + + L+L N + +P + +QLA LD
Sbjct: 7 NVADCSHLKLT------HIPDDLPS--NITVLNLTHNQ-LRRLPPTNFTRYSQLAILDAG 57
Query: 270 SNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSI 329
N S P L L LNL++N F T L+ L L N I I S+
Sbjct: 58 FNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNS-IHKIKSNP 116
Query: 330 FE-LLNLTEIYLSFSNFSGS---VELYDFAXXXXXXXXXXXXXXXXXXTKLTANSSFPNL 385
F+ NL ++ LS + S + + + NSS L
Sbjct: 117 FKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSS---L 173
Query: 386 SALDLSACNISEF-PDNLRTQHQLELLDLSENQIGGRIPSWM-WDIGVHTLIELDLSRNF 443
LDLS+ + EF P +T +L L L+ Q+ + + W++ ++ L L+ N
Sbjct: 174 RKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQ 233
Query: 444 L-----TSIDHLPWKNLEYLHLDSNSLQ----GSLPDLPPHMVSFSISNNSLTGEIPSSF 494
L ++ L W NL L L N+L GS LP + S+ N++ P SF
Sbjct: 234 LLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPS-LRYLSLEYNNIQRLSPRSF 292
Query: 495 CNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSG 554
LS+++YL L + + Q + ++ + + L YL +
Sbjct: 293 YGLSNLRYLSLKR-AFTKQSVSLASHPNIDDFSFQWLKY-------------LEYLNMDD 338
Query: 555 NHLEGPLPPSLTNCVKLQFLDVGN-----NNLSGQIPECLGNSTLQVLDMRMNNFSGSLP 609
N++ + T V L++L + L+ + L +S L L++ N+ S
Sbjct: 339 NNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIAN 398
Query: 610 QTFAKSCVLVSLNLNGN----RLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWXXXXXX 665
TF+ L L+L N +L G L N E+ N + + +
Sbjct: 399 GTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNI--FEIYLSYNKYLQLSTSSFALVPSL 456
Query: 666 XXXXXXRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLP--LWYLESFKAMMHGNNN 723
R I + R P L I+D S+N + + L LE+ + + +NN
Sbjct: 457 QRLMLRRVALKNVDISPSPFR-PLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNN 515
Query: 724 SVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNS 783
+ PG + +KG L+ ++L SN V L
Sbjct: 516 LARLWKRANPGGPVNF------LKG--------LSHLHILNLESNGLDEIPVGVFKNLFE 561
Query: 784 LKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
LKS+N+ NNL P + T L SL+L N
Sbjct: 562 LKSINLGLNNLNKLEPFIFDDQTSLRSLNLQKN 594
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 105/269 (39%), Gaps = 44/269 (16%)
Query: 78 GVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQF 137
+C + VI + + +IP N+ R LNL N + TD F
Sbjct: 9 ACSCSNQASRVICTRRELAEVPASIPVNT--------RYLNLQENSIQVIR-----TDTF 55
Query: 138 PSLTLLDLC--SCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ 195
L L++ S N I N + L L+L N +F L +LR L L+
Sbjct: 56 KHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHI-PSSFSNLQQLCYLDLDDNHFVGEIPA 254
NN + IP+ N + L LDL +I ++F L L YL+L + + +IP
Sbjct: 116 -NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDIPN 173
Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL--LWL---------------------- 290
+ +L L+LS N P SF L L LWL
Sbjct: 174 LTA--LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 291 NLEYNNFVGKIPDMFTNLTQLSFLGLAYN 319
NL +NN + D+FT L +L + L +N
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 4/185 (2%)
Query: 164 QLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNS 223
L L+L+ N P +F+NL LR L L+SN + IP + ++ L LD+S N
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENK 115
Query: 224 FSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSN 283
+ F +L L L++ DN V I + + L L L + + S+
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174
Query: 284 LQQLLWLNLEYNNFVGKIPDM-FTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSF 342
L L+ L L + N + I D F L +L L +++ + ++ + LNLT + ++
Sbjct: 175 LHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233
Query: 343 SNFSG 347
N +
Sbjct: 234 CNLTA 238
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 120/304 (39%), Gaps = 34/304 (11%)
Query: 261 TQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNE 320
T+ LDL N F++ L L L N P F NL L LGL N
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 321 LIGSIPSSIFE-LLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXX-XXXXXXTKLTA 378
L IP +F L NLT++ +S + V L D+ A
Sbjct: 92 L-KLIPLGVFTGLSNLTKLDISENKI---VILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147
Query: 379 NSSFPNLSALDLSACNISEFP-DNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIEL 437
S +L L L CN++ P + L H L +L L I + D L L
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA-----IRDYSFKRLYRL 202
Query: 438 DLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNL 497
+ I H P+ + + N L G ++ S SI++ +LT + +L
Sbjct: 203 K-----VLEISHWPYLDT----MTPNCLYGL------NLTSLSITHCNLTAVPYLAVRHL 247
Query: 498 SSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNA-KGCKLTYLR---LS 553
+++L+LS N +S I + + L ++++ Q ++ + A +G L YLR +S
Sbjct: 248 VYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG--LNYLRVLNVS 304
Query: 554 GNHL 557
GN L
Sbjct: 305 GNQL 308
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 112/277 (40%), Gaps = 25/277 (9%)
Query: 380 SSFPNLSALDLSACNISEF-PDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELD 438
+SFP+L L+L+ +S P L L L N++ IP ++ G+ L +LD
Sbjct: 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVF-TGLSNLTKLD 110
Query: 439 LSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLS 498
+S N + + L+Y+ D +L+ S + +N L +F L+
Sbjct: 111 ISENKIVIL-------LDYMFQDLYNLK-----------SLEVGDNDLVYISHRAFSGLN 152
Query: 499 SIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHL 557
S++ L L +L+ + L + L L LR N + + +L L +S
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 558 EGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNST--LQVLDMRMNNFSGSLPQTFAKS 615
+ P+ + L L + + NL+ +P L+ L++ N S +
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271
Query: 616 CVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQI 652
L + L G +L P + YL VL+V NQ+
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 96/408 (23%), Positives = 150/408 (36%), Gaps = 86/408 (21%)
Query: 167 YLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG 226
Y+DLS+NS +SFS L L+ L ++ Q L + +N+F G
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQ----------------QTPGLVIRNNTFRG 77
Query: 227 HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSS--FSNL 284
L L L LD N F+ ++ N + L L L+ G + S F L
Sbjct: 78 --------LSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128
Query: 285 QQLLWLNLEYNNFVGKIP-DMFTNLTQLSFLGLAYNELIGSIPSSI-------FELLNLT 336
L L L NN P F N+ + L L +N++ + F LL L+
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188
Query: 337 EIYLSFSN-------------FSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLTA----- 378
I L N + S+ D + TK+ +
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248
Query: 379 -----------------NSSFPNLSALDLSACNISE------FPDNLRTQHQLELLDLSE 415
N +F L A + C++S+ LE L L++
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308
Query: 416 NQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKN---LEYLHLDSNSLQGSLPDL 472
N+I + W G+ L++L+LS+NFL SID ++N LE L L N ++ +L D
Sbjct: 309 NEINKIDDNAFW--GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQ 365
Query: 473 P----PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ 516
P++ ++ N L F L+S+Q + L N P+
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 96/207 (46%), Gaps = 22/207 (10%)
Query: 139 SLTLLDLCSCNFTGSIPPSLGNNI--TQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQS 196
S+T LDL F S+ + I T++ L LS NS+ ++ SSF H + +
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS-NSY--NMGSSFG------HTNFKD 263
Query: 197 -NNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255
+NF K G + + DLS + + S FS+ L L L N + +I +
Sbjct: 264 PDNFTFK-----GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDN 317
Query: 256 LGNNITQLAYLDLSSNGFSGHIPSS-FSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFL 314
+T L L+LS N F G I S F NL +L L+L YN+ F L L L
Sbjct: 318 AFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
Query: 315 GLAYNELIGSIPSSIFE-LLNLTEIYL 340
L N+L S+P IF+ L +L +I+L
Sbjct: 377 ALDTNQL-KSVPDGIFDRLTSLQKIWL 402
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 86/383 (22%), Positives = 138/383 (36%), Gaps = 77/383 (20%)
Query: 469 LPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDL 528
+P+LP H+ +S NS+ +SF L +Q+L + Q P L +
Sbjct: 25 VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ-----QTP---------GLVI 70
Query: 529 RMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPEC 588
R N F+G L L+L N + L+ L + NL G +
Sbjct: 71 RNNTFRGL--------SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS- 121
Query: 589 LGN-----STLQVLDMRMNNFSGSLPQTFAKSCVLVS-LNLNGNRLKGPLPPSLVNCQ-- 640
GN ++L++L +R NN P +F + L+L N++K L+N Q
Sbjct: 122 -GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180
Query: 641 YLEVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPIGDTKTRVPFPKLRI--MDCS 698
+ +L + + + D YW W G+ PF I +D S
Sbjct: 181 HFTLLRLSSITLQDMNEYWLG---------------WEKCGN-----PFKNTSITTLDLS 220
Query: 699 HNQLTGVLPLWYLESFKAMMHGN---NNSVEVGYMRLPGSSNYYESIFLTMKGI------ 749
N + + ++ + +NS +G G +N+ + T KG+
Sbjct: 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--GHTNFKDPDNFTFKGLEASGVK 278
Query: 750 --DLQMERIL----------TTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGC 797
DL +I T + L+ N + L L LN+S N L
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338
Query: 798 IPSSLRNLTELESLDLSSNKLAG 820
NL +LE LDLS N +
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRA 361
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 153 SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNIT 212
++ S+ ++ T L L L+ N ++F L L L+L S NF+G I + + N+
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL-SQNFLGSIDSRMFENLD 347
Query: 213 QLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNG 272
+L LDLS N SF L L L LD N + +P + + +T L + L +N
Sbjct: 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406
Query: 273 FSGHIP 278
+ P
Sbjct: 407 WDCSCP 412
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 247 HFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD-MF 305
H V E+PA + Y+DLS N + +SFS LQ L +L +E I + F
Sbjct: 23 HQVPELPA-------HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75
Query: 306 TNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSV 349
L+ L L L YN+ + + L NL + L+ N G+V
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 100/399 (25%), Positives = 148/399 (37%), Gaps = 104/399 (26%)
Query: 100 GNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLG 159
G + N++ L L L L +N F ++ +G + +L +L L CN G++ L
Sbjct: 67 GLVIRNNTFRGLSSLIILKLDYNQF--LQLETGAFNGLANLEVLTLTQCNLDGAV---LS 121
Query: 160 NNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL 219
N F L L L L+ NN PAS N+ + LDL
Sbjct: 122 GNF--------------------FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
Query: 220 SSNSFSGHIPSSFSNLQ-------QLCYLDLDD--NHFVGEIPASLGNNITQLAYLDLSS 270
+ N N Q +L + L D +++G T + LDLS
Sbjct: 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221
Query: 271 NGFSGHIPSSF------SNLQQLLWLN-------LEYNNFVGKIPDMFTNLTQLSFLGLA 317
NGF + F + +Q L+ N + NF K PD FT L G+
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF--KDPDNFT-FKGLEASGVK 278
Query: 318 YNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLT 377
+L S IF LL +
Sbjct: 279 TCDL---SKSKIFALLK------------------------------------------S 293
Query: 378 ANSSFPNLSALDLSACNISEFPDNL--RTQHQLELLDLSENQIGGRIPSWMWDIGVHTLI 435
S F +L L L+ I++ DN H L+ L+LS+N +G I S M++ + L
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK-LNLSQNFLGS-IDSRMFE-NLDKLE 350
Query: 436 ELDLSRNFLTSI---DHLPWKNLEYLHLDSNSLQGSLPD 471
LDLS N + ++ L NL+ L LD+N L+ S+PD
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPD 388
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 695 MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQME 754
++ S+NQLT + PL L ++ NN ++ L +N + D+
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDPL 125
Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLS 814
+ LT ++LSSN I + G L SL+ LN S N +T P L NLT LE LD+S
Sbjct: 126 KNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 815 SNKLA 819
SNK++
Sbjct: 182 SNKVS 186
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 26/191 (13%)
Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220
N+T+L + ++ N P +NL L L L +N P N+T L L+LS
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELS 137
Query: 221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSG-HIPS 279
SN+ S S+ S L L L+ N P + N+T L LD+SSN S + +
Sbjct: 138 SNTISDI--SALSGLTSLQQLNFSSNQVTDLKPLA---NLTTLERLDISSNKVSDISVLA 192
Query: 280 SFSNLQQLLWLNLEYNNFVGKIP--DMFTNLTQLSFLGLAYNEL--IGSIPSSIFELLNL 335
+NL+ L + NN + I + TNL +LS G N+L IG++ S L NL
Sbjct: 193 KLTNLESL----IATNNQISDITPLGILTNLDELSLNG---NQLKDIGTLAS----LTNL 241
Query: 336 TEIYLSFSNFS 346
T++ L+ + S
Sbjct: 242 TDLDLANNQIS 252
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 94/209 (44%), Gaps = 18/209 (8%)
Query: 382 FPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSR 441
NL+ L+LS+ IS+ L L+ L+ S NQ+ P + TL LD+S
Sbjct: 128 LTNLNRLELSSNTISDISA-LSGLTSLQQLNFSSNQVTDLKPLA----NLTTLERLDISS 182
Query: 442 NFLTSIDHLP-WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG---EIPSSFCNL 497
N ++ I L NLE L +N + D+ P + ++ SL G + + +L
Sbjct: 183 NKVSDISVLAKLTNLESLIATNNQIS----DITPLGILTNLDELSLNGNQLKDIGTLASL 238
Query: 498 SSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHL 557
+++ LDL+NN +S P G + L L L N P A LT L L+ N L
Sbjct: 239 TNLTDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISPL--AGLTALTNLELNENQL 295
Query: 558 EGPLPPSLTNCVKLQFLDVGNNNLSGQIP 586
E P ++N L +L + NN+S P
Sbjct: 296 EDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 103/250 (41%), Gaps = 48/250 (19%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
L L +L L+ N + SG T SL L+ S T P + N+T L LD+
Sbjct: 128 LTNLNRLELSSNTISDISALSGLT----SLQQLNFSSNQVTDLKPLA---NLTTLERLDI 180
Query: 171 SINSFIGHIPSSFSNLHQLRHLD--LQSNNFVGKIPA----------SLGNN-------- 210
S N S S L +L +L+ + +NN + I SL N
Sbjct: 181 SSNKV-----SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 235
Query: 211 --ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDL 268
+T L LDL++N S P S L +L L L N P + +T L L+L
Sbjct: 236 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA---GLTALTNLEL 290
Query: 269 SSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSS 328
+ N P SNL+ L +L L +NN P ++LT+L L YN + + S
Sbjct: 291 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVSS- 344
Query: 329 IFELLNLTEI 338
L NLT I
Sbjct: 345 ---LANLTNI 351
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 765 LSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIP 823
L ++R K + V LN+L +N S+N LT P L+NLT+L + +++N++A P
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 102
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 104/269 (38%), Gaps = 44/269 (16%)
Query: 78 GVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQF 137
+C + VI + + +IP N+ R LNL N + TD F
Sbjct: 9 ACSCSNQASRVICTRRELAEVPASIPVNT--------RYLNLQENSIQVIR-----TDTF 55
Query: 138 PSLTLLDLC--SCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ 195
L L++ S N I N + L L+L N +F L +LR L L+
Sbjct: 56 KHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHI-PSSFSNLQQLCYLDLDDNHFVGEIPA 254
NN + IP+ N + L LDL +I ++F L L YL+L + +IP
Sbjct: 116 -NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIPN 173
Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL--LWL---------------------- 290
+ +L L+LS N P SF L L LWL
Sbjct: 174 LTA--LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 291 NLEYNNFVGKIPDMFTNLTQLSFLGLAYN 319
NL +NN + D+FT L +L + L +N
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 13/208 (6%)
Query: 135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL 194
D F +L + T ++ + N+I Q+ + I S G L +R+L L
Sbjct: 16 DAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-----IQYLPNVRYLAL 70
Query: 195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPA 254
N S +T L YL L+ N F L L L L +N +P
Sbjct: 71 GGNKLHD---ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPD 126
Query: 255 SLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD-MFTNLTQLSF 313
+ + +T L YL L N F L L L+L+ NN + +P+ +F LTQL
Sbjct: 127 GVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD-NNQLQSLPEGVFDKLTQLKQ 185
Query: 314 LGLAYNELIGSIPSSIFE-LLNLTEIYL 340
L L N+L S+P +F+ L +LT I+L
Sbjct: 186 LSLNDNQL-KSVPDGVFDRLTSLTHIWL 212
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 118 NLAFNDFNGSKISS---GFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINS 174
NL + G+++ S G D+ +L L L N S+P + + +T L YL L N
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLYLYHNQ 144
Query: 175 FIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSN 234
F L L LDL NN + +P + + +TQL L L+ N F
Sbjct: 145 LQSLPKGVFDKLTNLTRLDL-DNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDR 203
Query: 235 LQQLCYL 241
L L ++
Sbjct: 204 LTSLTHI 210
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 94/233 (40%), Gaps = 38/233 (16%)
Query: 115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINS 174
R LNL N K++S L +L L S N +I N + L L+L N
Sbjct: 67 RLLNLHENQIQIIKVNS--FKHLRHLEILQL-SRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 175 FIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS-SFS 233
+F L +L+ L L+ NN + IP+ N I L LDL +I +F
Sbjct: 124 LTTIPNGAFVYLSKLKELWLR-NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFE 182
Query: 234 NLQQLCYLDLDDNHFVGEIPASLGNNIT---QLAYLDLSSNGFSGHIPSSFS-------- 282
L L YL+L + EIP N+T +L LDLS N S P SF
Sbjct: 183 GLSNLRYLNLAMCNL-REIP-----NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
Query: 283 ----------------NLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYN 319
NLQ L+ +NL +NN D+FT L L + L +N
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 96/239 (40%), Gaps = 32/239 (13%)
Query: 251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ 310
E+P + N T+L L+L N +SF +L+ L L L N+ F L
Sbjct: 57 EVPDGISTN-TRL--LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113
Query: 311 LSFLGLAYNELIGSIPSSIFELL-NLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXX 369
L+ L L N L +IP+ F L L E++L +N S+ Y F
Sbjct: 114 LNTLELFDNRLT-TIPNGAFVYLSKLKELWLR-NNPIESIPSYAFNRIPSLRRLDLGELK 171
Query: 370 XXXXTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPS----- 424
A NL L+L+ CN+ E P NL +L+ LDLS N + P
Sbjct: 172 RLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Query: 425 ------WMWDIGV-----------HTLIELDLSRNFLTSIDH---LPWKNLEYLHLDSN 463
WM + +L+E++L+ N LT + H P +LE +HL N
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 103/243 (42%), Gaps = 37/243 (15%)
Query: 394 NISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWK 453
N+ E PD + T +L L+L ENQI +I+++ S HL +
Sbjct: 54 NLREVPDGISTNTRL--LNLHENQI--------------QIIKVN-------SFKHL--R 88
Query: 454 NLEYLHLDSNSLQ----GSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNS 509
+LE L L N ++ G+ L ++ + + +N LT +F LS ++ L L NN
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147
Query: 510 LSGQIPQCLGNS--TLETLDLRMNNFQGSIPQTNAKG-CKLTYLRLSGNHLEGPLPPSLT 566
+ IP N +L LDL I + +G L YL L+ +L P+LT
Sbjct: 148 IES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLT 204
Query: 567 NCVKLQFLDVGNNNLSGQIPECL-GNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNG 625
+KL LD+ N+LS P G LQ L M + F LV +NL
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264
Query: 626 NRL 628
N L
Sbjct: 265 NNL 267
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 98/239 (41%), Gaps = 23/239 (9%)
Query: 117 LNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN-NITQLAYLDLSINSF 175
L++ FN S S + F + D+ S G S+ + N+ + + D+S
Sbjct: 212 LSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDIS---- 267
Query: 176 IGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNL 235
++F QL+ LDL + + G G N+ L L LS N F S +N
Sbjct: 268 ----STTFQCFTQLQELDLTATHLKGLPSGMKGLNL--LKKLVLSVNHFDQLCQISAANF 321
Query: 236 QQLCYLDLDDNHFVGEIPASLG--NNITQLAYLDLSSNGFSGHIPSSF--SNLQQLLWLN 291
L +L + N V ++ +G + L LDLS N S NL L LN
Sbjct: 322 PSLTHLYIRGN--VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLN 379
Query: 292 LEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF------ELLNLTEIYLSFSN 344
L +N +G F QL L LA+ L + P S F ++LNLT +L SN
Sbjct: 380 LSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSN 438
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 98/220 (44%), Gaps = 6/220 (2%)
Query: 78 GVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQF 137
GV C G++ LDLS + + + + L L L+ LNL+ N+ G + S +
Sbjct: 339 GVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG--LQSQAFKEC 396
Query: 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN 197
P L LLDL + P S N+ L L+L+ + L LRHL+L+ N
Sbjct: 397 PQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGN 456
Query: 198 NFV-GKIPAS-LGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255
+F G I + L + L L LSS +F +L ++ ++DL N + S
Sbjct: 457 HFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDS 516
Query: 256 LGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYN 295
L + + YL+L++N + P L Q +NL +N
Sbjct: 517 LSH--LKGIYLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 15/166 (9%)
Query: 492 SSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLR 551
++F + +Q LDL+ L G G + L+ L L +N+F + A LT+L
Sbjct: 269 TTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLY 328
Query: 552 LSGN----HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPEC----LGN-STLQVLDMRMN 602
+ GN HL L N LQ LD+ +N++ +C L N S LQ L++ N
Sbjct: 329 IRGNVKKLHLGVGCLEKLGN---LQTLDLSHNDIEA--SDCCSLQLKNLSHLQTLNLSHN 383
Query: 603 NFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPS-LVNCQYLEVLDV 647
G Q F + L L+L RL P S N +L+VL++
Sbjct: 384 EPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL 429
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 33/219 (15%)
Query: 386 SALDLSACNISEFPDNLRTQHQLELLDLSENQIGG--RIPSWMWDIGVHTLIELDLSRNF 443
S L L+ N+S PDNL Q+ +L++++N + +P+ +L LD N
Sbjct: 62 SELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELPA--------SLEYLDACDNR 111
Query: 444 LTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG--EIPSSFCNLSSIQ 501
L+++ LP +L++L +D+N L LP+LP + + NN LT E+P +S++
Sbjct: 112 LSTLPELP-ASLKHLDVDNNQL-TXLPELPALLEYINADNNQLTXLPELP------TSLE 163
Query: 502 YLDLSNNSLS--GQIPQCLGNSTLETLDLRMNNFQG--SIPQTNAKGCKLT-YLRLSGNH 556
L + NN L+ ++P+ +LE LD+ N + ++P N + + R N
Sbjct: 164 VLSVRNNQLTFLPELPE-----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218
Query: 557 LEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQ 595
+ +P ++ + + + +N LS +I E L T Q
Sbjct: 219 ITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 249 VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNL 308
+ +PA + T L L N + P F +L QL +LNL N +F L
Sbjct: 31 LASVPAGIP---TTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKL 87
Query: 309 TQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYL 340
T+L+ L L N+L SIP +F+ L +LT IYL
Sbjct: 88 TKLTHLALHINQL-KSIPMGVFDNLKSLTHIYL 119
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 176 IGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNL 235
+ +P+ Q+ HL + N + K+ + +++TQL YL+L+ N + F L
Sbjct: 31 LASVPAGIPTTTQVLHLYI---NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKL 87
Query: 236 QQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN 271
+L +L L N IP + +N+ L ++ L +N
Sbjct: 88 TKLTHLALHINQL-KSIPMGVFDNLKSLTHIYLFNN 122
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 156 PSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLA 215
P + +++TQL YL+L++N F L +L HL L N IP + +N+ L
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL-KSIPMGVFDNLKSLT 115
Query: 216 YLDLSSNSF 224
++ L +N +
Sbjct: 116 HIYLFNNPW 124
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINS 174
+ L+L N +K+ G D LT L+L + N ++P + + +T+L +L L IN
Sbjct: 43 QVLHLYINQI--TKLEPGVFDSLTQLTYLNL-AVNQLTALPVGVFDKLTKLTHLALHINQ 99
Query: 175 FIGHIPSSFSNLHQLRHLDLQSN 197
F NL L H+ L +N
Sbjct: 100 LKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 9/128 (7%)
Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
IPSS + L +L+ N +P + + +TQL L LS N F L +L
Sbjct: 26 IPSSATRL------ELESNKL-QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78
Query: 288 LWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFS 346
L L N +F LTQL L L N+L S+P IF+ L +L +I+L + +
Sbjct: 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 137
Query: 347 GSVELYDF 354
S D+
Sbjct: 138 CSCPRIDY 145
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 132 GFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRH 191
G D+ LT L L S N S+P + + +T+L L L N F L QL+
Sbjct: 46 GVFDKLTQLTKLSL-SQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE 104
Query: 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIP 229
L L +N +P + + +T L + L +N + P
Sbjct: 105 LALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
Query: 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNN 198
S T L+L S N S+P + + +TQL L LS N F L +L L L N
Sbjct: 29 SATRLELES-NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 199 FVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIP 253
+P + + +TQL L L +N F L L + L N + P
Sbjct: 88 LQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNN 198
S+ LDL S F S+ + + L L+L+ N +F L L+ L+L S N
Sbjct: 267 SVRHLDL-SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL-SYN 324
Query: 199 FVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDN-----HFVGEIP 253
+G++ +S + ++AY+DL N + +F L++L LDL DN HF+ IP
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384
Query: 254 ASL--GNNITQLAYLDLSSN 271
GN + L ++L++N
Sbjct: 385 DIFLSGNKLVTLPKINLTAN 404
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 145/577 (25%), Positives = 202/577 (35%), Gaps = 110/577 (19%)
Query: 147 SCNFTGSIPPSLGNNITQL-------AYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNF 199
SC+F G I N+TQ+ L LS N SSF L QL+ L+L S
Sbjct: 1 SCSFDGRIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60
Query: 200 VGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGN- 258
I N+ L LDL S+ P +F L L L L +F G A L +
Sbjct: 61 PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL---YFCGLSDAVLKDG 117
Query: 259 ---NITQLAYLDLSSNGF-SGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNL--TQLS 312
N+ L LDLS N S ++ SF L L ++ N L LS
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177
Query: 313 FLGLAYNELIGSIPSSIFELLN-LTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXX 371
F LA N L + + +N + L + SG+ D
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237
Query: 372 XXTKLT-ANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSEN---QIGGRIPSWMW 427
+ A F N+ D + F R+ + LDLS + R+ +
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNT-----FAGLARS--SVRHLDLSHGFVFSLNSRVFETLK 290
Query: 428 DIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLT 487
D+ V L+L+ N + I + L+ L + ++S N L
Sbjct: 291 DLKV-----LNLAYNKINKIADEAFYGLDNLQV------------------LNLSYNLLG 327
Query: 488 GEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMN-----NFQGSIPQTN 541
S+F L + Y+DL N ++ Q L+TLDLR N +F SIP
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387
Query: 542 AKGCKLTYL----------RLSGNHLE----------------------------GPLPP 563
G KL L LS N LE G P
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447
Query: 564 SLTNCVKLQFLDVGNNNLSGQIPECL----GNSTLQVLDMRMNNFSGSLPQTFAKSCVLV 619
S ++ FL L+ + C G S LQVL + N + P F+ L
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507
Query: 620 SLNLNGNRL----KGPLPPSLVNCQYLEVLDVGNNQI 652
L+LN NRL LP + LE+LD+ NQ+
Sbjct: 508 GLSLNSNRLTVLSHNDLPAN------LEILDISRNQL 538
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 695 MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQME 754
++ S+NQLT + PL L ++ NN ++ L +N + D+
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDPL 125
Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLS 814
+ LT ++LSSN I + G L SL+ L+ S N +T P L NLT LE LD+S
Sbjct: 126 KNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 815 SNKLA 819
SNK++
Sbjct: 182 SNKVS 186
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 26/191 (13%)
Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220
N+T+L + ++ N P +NL L L L +N P N+T L L+LS
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELS 137
Query: 221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSG-HIPS 279
SN+ S S+ S L L L N P + N+T L LD+SSN S + +
Sbjct: 138 SNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLA---NLTTLERLDISSNKVSDISVLA 192
Query: 280 SFSNLQQLLWLNLEYNNFVGKIP--DMFTNLTQLSFLGLAYNEL--IGSIPSSIFELLNL 335
+NL+ L + NN + I + TNL +LS G N+L IG++ S L NL
Sbjct: 193 KLTNLESL----IATNNQISDITPLGILTNLDELSLNG---NQLKDIGTLAS----LTNL 241
Query: 336 TEIYLSFSNFS 346
T++ L+ + S
Sbjct: 242 TDLDLANNQIS 252
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 103/250 (41%), Gaps = 48/250 (19%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
L L +L L+ N + SG T SL L S T P + N+T L LD+
Sbjct: 128 LTNLNRLELSSNTISDISALSGLT----SLQQLSFSSNQVTDLKPLA---NLTTLERLDI 180
Query: 171 SINSFIGHIPSSFSNLHQLRHLD--LQSNNFVGKIPA----------SLGNN-------- 210
S N S S L +L +L+ + +NN + I SL N
Sbjct: 181 SSNKV-----SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 235
Query: 211 --ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDL 268
+T L LDL++N S P S L +L L L N P + +T L L+L
Sbjct: 236 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA---GLTALTNLEL 290
Query: 269 SSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSS 328
+ N P SNL+ L +L L +NN P ++LT+L L + N++ S
Sbjct: 291 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKV-----SD 341
Query: 329 IFELLNLTEI 338
+ L NLT I
Sbjct: 342 VSSLANLTNI 351
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 93/209 (44%), Gaps = 18/209 (8%)
Query: 382 FPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSR 441
NL+ L+LS+ IS+ L L+ L S NQ+ P + TL LD+S
Sbjct: 128 LTNLNRLELSSNTISDISA-LSGLTSLQQLSFSSNQVTDLKPLA----NLTTLERLDISS 182
Query: 442 NFLTSIDHLP-WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG---EIPSSFCNL 497
N ++ I L NLE L +N + D+ P + ++ SL G + + +L
Sbjct: 183 NKVSDISVLAKLTNLESLIATNNQIS----DITPLGILTNLDELSLNGNQLKDIGTLASL 238
Query: 498 SSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHL 557
+++ LDL+NN +S P G + L L L N P A LT L L+ N L
Sbjct: 239 TNLTDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISPL--AGLTALTNLELNENQL 295
Query: 558 EGPLPPSLTNCVKLQFLDVGNNNLSGQIP 586
E P ++N L +L + NN+S P
Sbjct: 296 EDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 765 LSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIP 823
L ++R K + V LN+L +N S+N LT P L+NLT+L + +++N++A P
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 102
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 99/225 (44%), Gaps = 16/225 (7%)
Query: 78 GVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQF 137
G C ++ LDLS + + N L L L+ LNL++N+ K + +
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA--FKEC 399
Query: 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN 197
P L LLDL S N+ L L+LS + F L L+HL+LQ N
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459
Query: 198 NF-VGKIPA-----SLGN-NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG 250
+F G I +LG I L++ DLS S H +F++L+ + ++DL N
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLS--SIDQH---AFTSLKMMNHVDLSHNRLTS 514
Query: 251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYN 295
+L + + YL+L+SN S +PS L Q +NL N
Sbjct: 515 SSIEALSH--LKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 136/324 (41%), Gaps = 39/324 (12%)
Query: 479 FSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIP 538
F+IS+N+ F S +Q LDL+ LS +G STL+ L L N F+
Sbjct: 267 FNISSNT--------FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ 318
Query: 539 QTNAKGCKLTYLRLSGNHLEGPLPPS-LTNCVKLQFLDVGNNNLSGQIPEC----LGN-S 592
+ + LT+L + GN L L N L+ LD+ ++++ + +C L N S
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI--ETSDCCNLQLRNLS 376
Query: 593 TLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPS-LVNCQYLEVLDVGNNQ 651
LQ L++ N + F + L L+L RLK S N L+VL++ ++
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 652 IDDTFPYWXXXXXXXXXXXXRSNRF-WGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWY 710
+D + + N F G I T + +L I+ S L+ + +
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496
Query: 711 LESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRF 770
S K M H V++ + RL SS S +KGI L +L+SN
Sbjct: 497 -TSLKMMNH-----VDLSHNRLTSSSIEALS---HLKGIYL------------NLASNHI 535
Query: 771 QRKIPEVVGKLNSLKSLNISHNNL 794
+P ++ L+ +++N+ N L
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPL 559
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query: 695 MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQME 754
++ S+NQLT + PL L ++ NN ++ L +N + D+
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDPL 125
Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLS 814
+ LT ++LSSN I + G L SL+ L+ S N +T P L NLT LE LD+S
Sbjct: 126 KNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 815 SNKLA 819
SNK++
Sbjct: 182 SNKVS 186
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 89/191 (46%), Gaps = 26/191 (13%)
Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220
N+T+L + ++ N P +NL L L L +N P N+T L L+LS
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELS 137
Query: 221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSG-HIPS 279
SN+ S S+ S L L L N P + N+T L LD+SSN S + +
Sbjct: 138 SNTISDI--SALSGLTSLQQLSFSSNQVTDLKPLA---NLTTLERLDISSNKVSDISVLA 192
Query: 280 SFSNLQQLLWLNLEYNNFVGKIP--DMFTNLTQLSFLGLAYNEL--IGSIPSSIFELLNL 335
+NL+ L + NN + I + TNL +LS G N+L IG++ S L NL
Sbjct: 193 KLTNLESL----IATNNQISDITPLGILTNLDELSLNG---NQLKDIGTLAS----LTNL 241
Query: 336 TEIYLSFSNFS 346
T++ L+ + S
Sbjct: 242 TDLDLANNQIS 252
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 93/209 (44%), Gaps = 18/209 (8%)
Query: 382 FPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSR 441
NL+ L+LS+ IS+ L L+ L S NQ+ P + TL LD+S
Sbjct: 128 LTNLNRLELSSNTISDISA-LSGLTSLQQLSFSSNQVTDLKPLA----NLTTLERLDISS 182
Query: 442 NFLTSIDHLP-WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG---EIPSSFCNL 497
N ++ I L NLE L +N + D+ P + ++ SL G + + +L
Sbjct: 183 NKVSDISVLAKLTNLESLIATNNQIS----DITPLGILTNLDELSLNGNQLKDIGTLASL 238
Query: 498 SSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHL 557
+++ LDL+NN +S P G + L L L N P A LT L L+ N L
Sbjct: 239 TNLTDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISPL--AGLTALTNLELNENQL 295
Query: 558 EGPLPPSLTNCVKLQFLDVGNNNLSGQIP 586
E P ++N L +L + NN+S P
Sbjct: 296 EDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 102/250 (40%), Gaps = 48/250 (19%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
L L +L L+ N + SG T SL L S T P + N+T L LD+
Sbjct: 128 LTNLNRLELSSNTISDISALSGLT----SLQQLSFSSNQVTDLKPLA---NLTTLERLDI 180
Query: 171 SINSFIGHIPSSFSNLHQLRHLD--LQSNNFVGKIPA----------SLGNN-------- 210
S N S S L +L +L+ + +NN + I SL N
Sbjct: 181 SSNKV-----SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL 235
Query: 211 --ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDL 268
+T L LDL++N S P S L +L L L N P + +T L L+L
Sbjct: 236 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA---GLTALTNLEL 290
Query: 269 SSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSS 328
+ N P SNL+ L +L L +NN P ++LT+L L YN + + S
Sbjct: 291 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDVSS- 344
Query: 329 IFELLNLTEI 338
L NLT I
Sbjct: 345 ---LANLTNI 351
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 765 LSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIP 823
L ++R K + V LN+L +N S+N LT P L+NLT+L + +++N++A P
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 102
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 241 LDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK 300
L LD N F +P L +N L +DLS+N S SFSN+ QLL L L YN
Sbjct: 36 LYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 301 IPDMFTNLTQLSFLGLAYNELIGSIPSSIF 330
P F L L L L N+ I +P F
Sbjct: 94 PPRTFDGLKSLRLLSLHGND-ISVVPEGAF 122
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 187 HQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDN 246
+ L L N F +P L +N L +DLS+N S SFSN+ QL L L N
Sbjct: 31 RDVTELYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
Query: 247 HFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYN 295
IP + + L L L N S +F++L L L + N
Sbjct: 89 RLRC-IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 153 SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNIT 212
++ P +N L +DLS N SFSN+ QL L L S N + IP + +
Sbjct: 44 TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL-SYNRLRCIPPRTFDGLK 102
Query: 213 QLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDN 246
L L L N S +F++L L +L + N
Sbjct: 103 SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 17/129 (13%)
Query: 408 LELLDLSENQIGG--RIPSWMWDIGVHT------------LIELDLSRNFLTSIDHLPWK 453
L+ L +S+NQ+ +PS ++ + + L EL +S N LTS+ LP
Sbjct: 183 LQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP-S 241
Query: 454 NLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ 513
L+ L + N L SLP LP ++S S+ N LT +P S +LSS ++L N LS +
Sbjct: 242 ELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299
Query: 514 IPQCLGNST 522
Q L T
Sbjct: 300 TLQALREIT 308
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 442 NFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG--EIPSSFCNL 497
N LTS+ LP L L + N L SLP LPP ++ SI +N LT +PS C L
Sbjct: 71 NNLTSLPALP-PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 94/241 (39%), Gaps = 32/241 (13%)
Query: 249 VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNL 308
+ E+P + +N YL+L N +F +L L L L N+ F L
Sbjct: 66 LSEVPQGIPSNTR---YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL 122
Query: 309 TQLSFLGLAYNELIGSIPSSIFELL-NLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXX 367
L+ L L ++ + IPS FE L L E++L +N S+ Y F
Sbjct: 123 ASLNTLEL-FDNWLTVIPSGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRLDLGE 180
Query: 368 XXXXXXTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIP---- 423
A NL L+L CNI + P NL LE L++S N P
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFH 239
Query: 424 -----SWMWDI-------------GVHTLIELDLSRNFLTSIDH---LPWKNLEYLHLDS 462
+W + G+ +L+EL+L+ N L+S+ H P + L LHL
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299
Query: 463 N 463
N
Sbjct: 300 N 300
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 107/264 (40%), Gaps = 38/264 (14%)
Query: 80 TCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPS 139
+C + V+ S + IPSN+ R LNL N N I +
Sbjct: 51 SCSNQFSKVVCTRRGLSEVPQGIPSNT--------RYLNLMEN--NIQMIQADTFRHLHH 100
Query: 140 LTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPS-SFSNLHQLRHLDLQSNN 198
L +L L N I N + L L+L ++++ IPS +F L +LR L L+ NN
Sbjct: 101 LEVLQLGR-NSIRQIEVGAFNGLASLNTLEL-FDNWLTVIPSGAFEYLSKLRELWLR-NN 157
Query: 199 FVGKIPASLGNNITQLAYLDL---------SSNSFSGHIPSSFSNLQQ------------ 237
+ IP+ N + L LDL S +F G + NL
Sbjct: 158 PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL 217
Query: 238 --LCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYN 295
L L++ NHF P S + ++ L L + ++ S ++F L L+ LNL +N
Sbjct: 218 VGLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276
Query: 296 NFVGKIPDMFTNLTQLSFLGLAYN 319
N D+FT L L L L +N
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHN 300
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 97/232 (41%), Gaps = 29/232 (12%)
Query: 400 DNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLH 459
D R H LE+L L N I +I ++ G+ +L L+L N+LT I P EYL
Sbjct: 93 DTFRHLHHLEVLQLGRNSIR-QIEVGAFN-GLASLNTLELFDNWLTVI---PSGAFEYL- 146
Query: 460 LDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPS-SFCNLSSIQYLDLSNNSLSGQIPQCL 518
+ + NN + IPS +F + S+ LDL I +
Sbjct: 147 --------------SKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEGA 191
Query: 519 --GNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDV 576
G L+ L+L M N + T G L L +SGNH P S L+ L V
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMPNLTPLVG--LEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249
Query: 577 GNNNLSGQIPECL-GNSTLQVLDMRMNNFSGSLPQT-FAKSCVLVSLNLNGN 626
N+ +S G ++L L++ NN S SLP F LV L+L+ N
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/363 (21%), Positives = 138/363 (38%), Gaps = 65/363 (17%)
Query: 469 LPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDL 528
+P+LP H+ +S NS+ +SF L +Q+L + Q P L +
Sbjct: 25 VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ-----QTP---------GLVI 70
Query: 529 RMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPEC 588
R N F+G L L+L N + L+ L + NL G +
Sbjct: 71 RNNTFRGL--------SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS- 121
Query: 589 LGN-----STLQVLDMRMNNFSGSLPQTFAKSCVLVS-LNLNGNRLKGPLPPSLVNCQ-- 640
GN ++L++L +R NN P +F + L+L N++K L+N Q
Sbjct: 122 -GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180
Query: 641 YLEVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPIGDTKTRVPFPKLRI--MDCS 698
+ +L + + + D YW W G+ PF I +D S
Sbjct: 181 HFTLLRLSSITLQDMNEYWLG---------------WEKCGN-----PFKNTSITTLDLS 220
Query: 699 HNQLTGVLPLWYLESFKAMMHGN---NNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMER 755
N + + ++ + +NS +G G +N+ + T KG++
Sbjct: 221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--GHTNFKDPDNFTFKGLE----- 273
Query: 756 ILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSS 815
+ T DLS ++ + V L+ L ++ N + ++ LT L+ L L +
Sbjct: 274 -ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDT 332
Query: 816 NKL 818
N+L
Sbjct: 333 NQL 335
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 101/255 (39%), Gaps = 27/255 (10%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
L L L L + +G+ +S F SL +L L N P S N+ + LDL
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161
Query: 171 SINSFIGHIPSSFSNLH-------QLRHLDLQSNNFVGKIPASLGNNI--TQLAYLDLSS 221
+ N N +L + LQ N GN T + LDLS
Sbjct: 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221
Query: 222 NSFSGHIPSSFSNL---QQLCYLDLDDNHFVG--------EIPASL---GNNITQLAYLD 267
N F + F + ++ L L +++ +G + P + G + + D
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281
Query: 268 LSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD-MFTNLTQLSFLGLAYNELIGSIP 326
LS + + S FS+ L L L N + KI D F LT L L L N+L S+P
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLKELALDTNQL-KSVP 339
Query: 327 SSIFE-LLNLTEIYL 340
IF+ L +L +I+L
Sbjct: 340 DGIFDRLTSLQKIWL 354
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 247 HFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD-MF 305
H V E+PA + Y+DLS N + +SFS LQ L +L +E I + F
Sbjct: 23 HQVPELPA-------HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF 75
Query: 306 TNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSV 349
L+ L L L YN+ + + L NL + L+ N G+V
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV 119
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 71/184 (38%), Gaps = 35/184 (19%)
Query: 167 YLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG 226
Y+DLS+NS +SFS L L+ L ++ Q L + +N+F G
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQ----------------QTPGLVIRNNTFRG 77
Query: 227 HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSS--FSNL 284
L L L LD N F+ ++ N + L L L+ G + S F L
Sbjct: 78 --------LSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128
Query: 285 QQLLWLNLEYNNFVGKIP-DMFTNLTQLSFLGLAYNELIGSIPSSI-------FELLNLT 336
L L L NN P F N+ + L L +N++ + F LL L+
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188
Query: 337 EIYL 340
I L
Sbjct: 189 SITL 192
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 1/157 (0%)
Query: 198 NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG 257
N + +PA+ L L L SN + ++F+ L L LDL DN + + +
Sbjct: 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLA 317
+ + +L L L G P F L L +L L+ N D F +L L+ L L
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161
Query: 318 YNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDF 354
N I S+P F L+ + L N V + F
Sbjct: 162 GNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 9/184 (4%)
Query: 92 DLSCSWLHGNIPSN---SSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTL-LDLCS 147
+L+ WLH N+ + ++ L L +L+L+ N S + F TL LD C
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116
Query: 148 CNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASL 207
G P L + L YL L N+ +F +L L HL L N + +P
Sbjct: 117 LQELG---PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERA 172
Query: 208 GNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLD 267
+ L L L N + P +F +L +L L L N+ + +P + L YL
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLR 231
Query: 268 LSSN 271
L+ N
Sbjct: 232 LNDN 235
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 37/184 (20%)
Query: 430 GVHTLIELDLSRNF-LTSIDHLPWKNL---EYLHLDSNSLQGSLPDLPPHMVSFSISNNS 485
G+ L +LDLS N L S+D + L LHLD LQ P L
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL------------- 124
Query: 486 LTGEIPSSFCNLSSIQYLDLSNNSLSGQIP----QCLGNSTLETLDLRMNNFQGSIPQTN 541
F L+++QYL L +N+L +P + LGN L L L N S+P+
Sbjct: 125 --------FRGLAALQYLYLQDNALQA-LPDDTFRDLGN--LTHLFLHGNRIS-SVPERA 172
Query: 542 AKGC-KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLD-M 599
+G L L L N + P + + +L L + NNLS E L + L+ L +
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRALQYL 230
Query: 600 RMNN 603
R+N+
Sbjct: 231 RLND 234
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 1/157 (0%)
Query: 198 NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG 257
N + +PA+ L L L SN + ++F+ L L LDL DN + + +
Sbjct: 41 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 100
Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLA 317
+ + +L L L G P F L L +L L+ N D F +L L+ L L
Sbjct: 101 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 160
Query: 318 YNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDF 354
N I S+P F L+ + L N V + F
Sbjct: 161 GNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 196
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 9/184 (4%)
Query: 92 DLSCSWLHGNIPSN---SSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTL-LDLCS 147
+L+ WLH N+ + ++ L L +L+L+ N S + F TL LD C
Sbjct: 56 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 115
Query: 148 CNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASL 207
G P L + L YL L N+ +F +L L HL L N + +P
Sbjct: 116 LQELG---PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERA 171
Query: 208 GNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLD 267
+ L L L N + P +F +L +L L L N+ + +P + L YL
Sbjct: 172 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLR 230
Query: 268 LSSN 271
L+ N
Sbjct: 231 LNDN 234
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 37/184 (20%)
Query: 430 GVHTLIELDLSRNF-LTSIDHLPWKNL---EYLHLDSNSLQGSLPDLPPHMVSFSISNNS 485
G+ L +LDLS N L S+D + L LHLD LQ P L
Sbjct: 77 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL------------- 123
Query: 486 LTGEIPSSFCNLSSIQYLDLSNNSLSGQIP----QCLGNSTLETLDLRMNNFQGSIPQTN 541
F L+++QYL L +N+L +P + LGN L L L N S+P+
Sbjct: 124 --------FRGLAALQYLYLQDNALQA-LPDDTFRDLGN--LTHLFLHGNRIS-SVPERA 171
Query: 542 AKGC-KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLD-M 599
+G L L L N + P + + +L L + NNLS E L + L+ L +
Sbjct: 172 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL--APLRALQYL 229
Query: 600 RMNN 603
R+N+
Sbjct: 230 RLND 233
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 194 LQSNNFVGKIPAS-LGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEI 252
L ++N +G+I + L + L L+L N +G P++F + L L +N + EI
Sbjct: 35 LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEI 93
Query: 253 PASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNF 297
+ + QL L+L N S +P SF +L L LNL N F
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 59/146 (40%), Gaps = 14/146 (9%)
Query: 84 ATGHVIGLDLSCSWLHGNIPSNSSLFFLPR---LRKLNLAFNDFNGSKISS-GFTDQFPS 139
A H G + C+ L +PR L L ND +ISS G + P
Sbjct: 4 AMCHCEGTTVDCT--------GRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPH 55
Query: 140 LTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNF 199
L L+L TG I P+ + + L L N F LHQL+ L+L N
Sbjct: 56 LVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 200 VGKIPASLGNNITQLAYLDLSSNSFS 225
+P S ++ L L+L+SN F+
Sbjct: 115 SCVMPGSF-EHLNSLTSLNLASNPFN 139
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 456 EYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIP 515
E + S+ L G LP H+V + N LTG P++F S IQ L L N +
Sbjct: 40 ELGRISSDGLFGRLP----HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 516 QC-LGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN 555
+ LG L+TL+L N +P + LT L L+ N
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 771 QRKIPEVVGK----LNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
+ KI E+ K L+ LK+LN+ N ++ +P S +L L SL+L+SN
Sbjct: 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 73/160 (45%), Gaps = 8/160 (5%)
Query: 163 TQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASL-GNNITQLAYLDLSS 221
+ +L+ + N F + S L +L+ L LQ N +L N++ L LD+S
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 222 NSFSGHI-PSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSS 280
NS + H + + + + L+L N G + L ++ LDL +N IP
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---PKVKVLDLHNNRIMS-IPKD 468
Query: 281 FSNLQQLLWLNLEYNNFVGKIPD-MFTNLTQLSFLGLAYN 319
++LQ L LN+ N + +PD +F LT L ++ L N
Sbjct: 469 VTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDN 507
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 471 DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSL-SGQIPQCLGNSTLETLDLR 529
DLPP + S+S NS++ LS ++ L LS+N + S L N LE LD+
Sbjct: 49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108
Query: 530 MNNFQGSIPQTNAKGCKLTYLR---LSGNHLEG-PLPPSLTNCVKLQFL 574
N Q N C + LR LS N + P+ N KL FL
Sbjct: 109 HNRLQ------NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 61/137 (44%), Gaps = 11/137 (8%)
Query: 165 LAYLDLSINSF--IGHIPSSFSNLHQLRHLDLQSNNF-VGKIPASLGNNITQLAYLDLSS 221
L YLD+S N I P + LRHLDL N+F V + G N+T+L +L LS+
Sbjct: 102 LEYLDVSHNRLQNISCCP-----MASLRHLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSA 155
Query: 222 NSFSGHIPSSFSNLQQLCY-LDLDDNHFVGEIPASLGNNITQLAYLDLSSNG-FSGHIPS 279
F ++L C LDL H G SL T + +L N FS +
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215
Query: 280 SFSNLQQLLWLNLEYNN 296
S + L L N++ N+
Sbjct: 216 SVNALGHLQLSNIKLND 232
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG-EIPASLGNNITQLAYLDLSSNGFSG 275
L LS NS S S L +L L L N + L N L YLD+S N
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ--DLEYLDVSHNRLQN 114
Query: 276 HIPSSFSNLQQLLWLNLEYNNF-VGKIPDMFTNLTQLSFLGLA 317
++L+ L +L +N+F V + F NLT+L+FLGL+
Sbjct: 115 ISCCPMASLRHL---DLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 404 TQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDH---LPW-KNLEYLH 459
T +L+ L L N + + + +L LD+S N L S + W +++ L+
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434
Query: 460 LDSNSLQGSLPD-LPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSG 512
L SN L GS+ LPP + + NN + IP +L ++Q L++++N L
Sbjct: 435 LSSNMLTGSVFRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS 487
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 496 NLSSIQYLDLSNNSLSGQI--PQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLS 553
N+SS++ LD+S NSL+ C ++ L+L N GS+ + K+ L L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKV--LDLH 458
Query: 554 GNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPE 587
N + +P +T+ LQ L+V +N L +P+
Sbjct: 459 NNRIMS-IPKDVTHLQALQELNVASNQLKS-VPD 490
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
Query: 478 SFSISNNSLTGEIPSSFCNLS-SIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGS 536
+ +S NSL C + SI L+LS+N L+G + +CL ++ LDL NN S
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLH-NNRIMS 464
Query: 537 IPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNN 579
IP+ L L ++ N L+ LQ++ + +N
Sbjct: 465 IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 751 LQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810
LQ++ L T+DLS N+ Q +P + L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 811 LDLSSNKLAGRIP 823
L L N+L P
Sbjct: 129 LYLKGNELKTLPP 141
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 90/209 (43%), Gaps = 39/209 (18%)
Query: 461 DSNSLQGSLPDLPPHMVSFSISNN-----SLTGEIPSSF--------CNLSSIQY----- 502
D L PDLP +S N SL +P + C L+ +Q
Sbjct: 18 DKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP 77
Query: 503 ----LDLSNNSLSGQIPQCLGNS--TLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGN 555
LDLS+N L Q LG + L LD+ N S+P +G +L L L GN
Sbjct: 78 VLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 134
Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQTFA 613
L+ P LT KL+ L + NN+L+ ++P L G L L ++ N+ ++P+ F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Query: 614 KSCVLVSLNLNGNRLKGPLPPSLVNCQYL 642
S +L L+GN P L NC+ L
Sbjct: 193 GSHLLPFAFLHGN-------PWLCNCEIL 214
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 34/144 (23%)
Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
TKL + + P L LDLS +QL+ L L +G +P+
Sbjct: 68 TKLQVDGTLPVLGTLDLS-------------HNQLQSLPL----LGQTLPA--------- 101
Query: 434 LIELDLSRNFLTSIDHLPWK---NLEYLHLDSNSLQGSLPDL---PPHMVSFSISNNSLT 487
L LD+S N LTS+ + L+ L+L N L+ P L P + S++NN LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
Query: 488 GEIPSSFCN-LSSIQYLDLSNNSL 510
E+P+ N L ++ L L NSL
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSL 184
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
LP L L+L+ N + P+LT+LD+ S N S+P + +L L L
Sbjct: 76 LPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQELYL 131
Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230
N P + +L L L +NN + ++PA L N + L L L NS IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSL-ANNDLTELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 231 SF 232
F
Sbjct: 190 GF 191
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 751 LQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810
LQ++ L T+DLS N+ Q +P + L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 811 LDLSSNKLAGRIP 823
L L N+L P
Sbjct: 129 LYLKGNELKTLPP 141
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 89/209 (42%), Gaps = 39/209 (18%)
Query: 461 DSNSLQGSLPDLPPHMVSFSISNN-----SLTGEIPSSF--------CNLSSIQY----- 502
D L PDLP +S N SL +P + C L+ +Q
Sbjct: 18 DKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP 77
Query: 503 ----LDLSNNSLSGQIPQCLGNS--TLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGN 555
LDLS+N L Q LG + L LD+ N S+P +G +L L L GN
Sbjct: 78 VLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 134
Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQTFA 613
L+ P LT KL+ L + NN L+ ++P L G L L ++ N+ ++P+ F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Query: 614 KSCVLVSLNLNGNRLKGPLPPSLVNCQYL 642
S +L L+GN P L NC+ L
Sbjct: 193 GSHLLPFAFLHGN-------PWLCNCEIL 214
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 34/144 (23%)
Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
TKL + + P L LDLS +QL+ L L +G +P+
Sbjct: 68 TKLQVDGTLPVLGTLDLS-------------HNQLQSLPL----LGQTLPA--------- 101
Query: 434 LIELDLSRNFLTSIDHLPWK---NLEYLHLDSNSLQGSLPDL---PPHMVSFSISNNSLT 487
L LD+S N LTS+ + L+ L+L N L+ P L P + S++NN LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 488 GEIPSSFCN-LSSIQYLDLSNNSL 510
E+P+ N L ++ L L NSL
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSL 184
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
LP L L+L+ N + P+LT+LD+ S N S+P + +L L L
Sbjct: 76 LPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQELYL 131
Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230
N P + +L L L +NN + ++PA L N + L L L NS IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 231 SF 232
F
Sbjct: 190 GF 191
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 20/120 (16%)
Query: 539 QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNS--TLQV 596
Q N C+LT L++ G LP L LD+ +N L Q LG + L V
Sbjct: 59 QLNLDRCELTKLQVDGT-----LP-------VLGTLDLSHNQL--QSLPLLGQTLPALTV 104
Query: 597 LDMRMNNFSGSLPQTFAKSC-VLVSLNLNGNRLKGPLPPSLVN-CQYLEVLDVGNNQIDD 654
LD+ N + SLP + L L L GN LK LPP L+ LE L + NNQ+ +
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLTE 162
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 751 LQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810
LQ++ L T+DLS N+ Q +P + L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 811 LDLSSNKLAGRIP 823
L L N+L P
Sbjct: 129 LYLKGNELKTLPP 141
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 89/209 (42%), Gaps = 39/209 (18%)
Query: 461 DSNSLQGSLPDLPPHMVSFSISNN-----SLTGEIPSSF--------CNLSSIQY----- 502
D L PDLP +S N SL +P + C L+ +Q
Sbjct: 18 DKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP 77
Query: 503 ----LDLSNNSLSGQIPQCLGNS--TLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGN 555
LDLS+N L Q LG + L LD+ N S+P +G +L L L GN
Sbjct: 78 VLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 134
Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQTFA 613
L+ P LT KL+ L + NN L+ ++P L G L L ++ N+ ++P+ F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Query: 614 KSCVLVSLNLNGNRLKGPLPPSLVNCQYL 642
S +L L+GN P L NC+ L
Sbjct: 193 GSHLLPFAFLHGN-------PWLCNCEIL 214
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 34/144 (23%)
Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
TKL + + P L LDLS +QL+ L L +G +P+
Sbjct: 68 TKLQVDGTLPVLGTLDLS-------------HNQLQSLPL----LGQTLPA--------- 101
Query: 434 LIELDLSRNFLTSIDHLPWK---NLEYLHLDSNSLQGSLPDL---PPHMVSFSISNNSLT 487
L LD+S N LTS+ + L+ L+L N L+ P L P + S++NN LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 488 GEIPSSFCN-LSSIQYLDLSNNSL 510
E+P+ N L ++ L L NSL
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSL 184
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
LP L L+L+ N + P+LT+LD+ S N S+P + +L L L
Sbjct: 76 LPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQELYL 131
Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230
N P + +L L L +NN + ++PA L N + L L L NS IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 231 SF 232
F
Sbjct: 190 GF 191
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 20/120 (16%)
Query: 539 QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNS--TLQV 596
Q N C+LT L++ G LP L LD+ +N L Q LG + L V
Sbjct: 59 QLNLDRCELTKLQVDGT-----LP-------VLGTLDLSHNQL--QSLPLLGQTLPALTV 104
Query: 597 LDMRMNNFSGSLPQTFAKSC-VLVSLNLNGNRLKGPLPPSLVN-CQYLEVLDVGNNQIDD 654
LD+ N + SLP + L L L GN LK LPP L+ LE L + NNQ+ +
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLTE 162
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 751 LQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810
LQ++ L T+DLS N+ Q +P + L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 811 LDLSSNKLAGRIP 823
L L N+L P
Sbjct: 129 LYLKGNELKTLPP 141
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 24/221 (10%)
Query: 431 VHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQG-SLPDLPPH--MVSFSISNNSLT 487
V + +E++ + LT++ K+ LHL N L SL L P+ + ++ LT
Sbjct: 9 VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 488 G-EIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNS--TLETLDLRMNNFQGSIPQTNAKG 544
++ + L + LDLS+N L Q LG + L LD+ N S+P +G
Sbjct: 69 KLQVDGTLPVLGT---LDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG 122
Query: 545 C-KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRM 601
+L L L GN L+ P LT KL+ L + NNNL+ ++P L G L L ++
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 602 NNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYL 642
N+ ++P+ F S +L L+GN P L NC+ L
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGN-------PWLCNCEIL 214
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
LP L L+L+ N + P+LT+LD+ S N S+P + +L L L
Sbjct: 76 LPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQELYL 131
Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230
N P + +L L L +NN ++PA L N + L L L NS IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 231 SF 232
F
Sbjct: 190 GF 191
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 34/144 (23%)
Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
TKL + + P L LDLS +QL+ L L +G +P+
Sbjct: 68 TKLQVDGTLPVLGTLDLS-------------HNQLQSLPL----LGQTLPA--------- 101
Query: 434 LIELDLSRNFLTSIDHLPWK---NLEYLHLDSNSLQGSLPDL---PPHMVSFSISNNSLT 487
L LD+S N LTS+ + L+ L+L N L+ P L P + S++NN+LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 488 GEIPSSFCN-LSSIQYLDLSNNSL 510
E+P+ N L ++ L L NSL
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 751 LQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810
LQ++ L T+DLS N+ Q +P + L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 811 LDLSSNKLAGRIP 823
L L N+L P
Sbjct: 129 LYLKGNELKTLPP 141
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 90/209 (43%), Gaps = 39/209 (18%)
Query: 461 DSNSLQGSLPDLPPHMVSFSISNN-----SLTGEIPSSF--------CNLSSIQY----- 502
D L PDLP +S N SL +P + C L+ +Q
Sbjct: 18 DKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP 77
Query: 503 ----LDLSNNSLSGQIPQCLGNS--TLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGN 555
LDLS+N L Q LG + L LD+ N S+P +G +L L L GN
Sbjct: 78 VLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 134
Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQTFA 613
L+ P LT KL+ L + NNNL+ ++P L G L L ++ N+ ++P+ F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Query: 614 KSCVLVSLNLNGNRLKGPLPPSLVNCQYL 642
S +L L+GN P L NC+ L
Sbjct: 193 GSHLLPFAFLHGN-------PWLCNCEIL 214
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 28/141 (19%)
Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
TKL + + P L LDLS + P +T L +LD+S N++ + +G
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG--- 124
Query: 434 LIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDL---PPHMVSFSISNNSLTGEI 490
L+ L+L N L+ P L P + S++NN+LT E+
Sbjct: 125 --------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL 163
Query: 491 PSSFCN-LSSIQYLDLSNNSL 510
P+ N L ++ L L NSL
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
LP L L+L+ N + P+LT+LD+ S N S+P + +L L L
Sbjct: 76 LPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQELYL 131
Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230
N P + +L L L +NN ++PA L N + L L L NS IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 231 SF 232
F
Sbjct: 190 GF 191
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 751 LQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810
LQ++ L T+DLS N+ Q +P + L +L L++S N LT +LR L EL+
Sbjct: 71 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 129
Query: 811 LDLSSNKLAGRIP 823
L L N+L P
Sbjct: 130 LYLKGNELKTLPP 142
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 91/209 (43%), Gaps = 39/209 (18%)
Query: 461 DSNSLQGSLPDLPPHMVSFSISNN-----SLTGEIPSSF--------CNLSSIQY----- 502
D +L PDLP +S N SL +P + C L+ +Q
Sbjct: 19 DKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP 78
Query: 503 ----LDLSNNSLSGQIPQCLGNS--TLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGN 555
LDLS+N L Q LG + L LD+ N S+P +G +L L L GN
Sbjct: 79 VLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 135
Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQTFA 613
L+ P LT KL+ L + NNNL+ ++P L G L L ++ N+ ++P+ F
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 193
Query: 614 KSCVLVSLNLNGNRLKGPLPPSLVNCQYL 642
S +L L+GN P L NC+ L
Sbjct: 194 GSHLLPFAFLHGN-------PWLCNCEIL 215
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
LP L L+L+ N + P+LT+LD+ S N S+P + +L L L
Sbjct: 77 LPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQELYL 132
Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230
N P + +L L L +NN ++PA L N + L L L NS IP
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPK 190
Query: 231 SF 232
F
Sbjct: 191 GF 192
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 28/141 (19%)
Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
TKL + + P L LDLS + P +T L +LD+S N++ + +G
Sbjct: 69 TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG--- 125
Query: 434 LIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDL---PPHMVSFSISNNSLTGEI 490
L+ L+L N L+ P L P + S++NN+LT E+
Sbjct: 126 --------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-EL 164
Query: 491 PSSFCN-LSSIQYLDLSNNSL 510
P+ N L ++ L L NSL
Sbjct: 165 PAGLLNGLENLDTLLLQENSL 185
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 751 LQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810
LQ++ L T+DLS N+ Q +P + L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 811 LDLSSNKLAGRIP 823
L L N+L P
Sbjct: 129 LYLKGNELKTLPP 141
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 24/221 (10%)
Query: 431 VHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQG-SLPDLPPH--MVSFSISNNSLT 487
V + +E++ + LT++ K+ LHL N L SL L P+ + ++ LT
Sbjct: 9 VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 488 G-EIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNS--TLETLDLRMNNFQGSIPQTNAKG 544
++ + L + LDLS+N L Q LG + L LD+ N S+P +G
Sbjct: 69 KLQVDGTLPVLGT---LDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG 122
Query: 545 C-KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRM 601
+L L L GN L+ P LT KL+ L + NNNL+ ++P L G L L ++
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 602 NNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYL 642
N+ ++P+ F S +L L+GN P L NC+ L
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGN-------PWLCNCEIL 214
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
LP L L+L+ N + P+LT+LD+ S N S+P + +L L L
Sbjct: 76 LPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQELYL 131
Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230
N P + +L L L +NN ++PA L N + L L L NS IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 231 SF 232
F
Sbjct: 190 GF 191
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 34/144 (23%)
Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
TKL + + P L LDLS +QL+ L L +G +P+
Sbjct: 68 TKLQVDGTLPVLGTLDLS-------------HNQLQSLPL----LGQTLPA--------- 101
Query: 434 LIELDLSRNFLTSIDHLPWK---NLEYLHLDSNSLQGSLPDL---PPHMVSFSISNNSLT 487
L LD+S N LTS+ + L+ L+L N L+ P L P + S++NN+LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 488 GEIPSSFCN-LSSIQYLDLSNNSL 510
E+P+ N L ++ L L NSL
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 751 LQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810
LQ++ L T+DLS N+ Q +P + L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 811 LDLSSNKLAGRIP 823
L L N+L P
Sbjct: 129 LYLKGNELKTLPP 141
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 24/221 (10%)
Query: 431 VHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQG-SLPDLPPH--MVSFSISNNSLT 487
V + +E++ + LT++ K+ LHL N L SL L P+ + ++ LT
Sbjct: 9 VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 488 G-EIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNS--TLETLDLRMNNFQGSIPQTNAKG 544
++ + L + LDLS+N L Q LG + L LD+ N S+P +G
Sbjct: 69 KLQVDGTLPVLGT---LDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG 122
Query: 545 C-KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRM 601
+L L L GN L+ P LT KL+ L + NNNL+ ++P L G L L ++
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181
Query: 602 NNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYL 642
N+ ++P+ F S +L L+GN P L NC+ L
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGN-------PWLCNCEIL 214
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
LP L L+L+ N + P+LT+LD+ S N S+P + +L L L
Sbjct: 76 LPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQELYL 131
Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230
N P + +L L L +NN ++PA L N + L L L NS IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 231 SF 232
F
Sbjct: 190 GF 191
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 34/144 (23%)
Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
TKL + + P L LDLS +QL+ L L +G +P+
Sbjct: 68 TKLQVDGTLPVLGTLDLS-------------HNQLQSLPL----LGQTLPA--------- 101
Query: 434 LIELDLSRNFLTSIDHLPWK---NLEYLHLDSNSLQGSLPDL---PPHMVSFSISNNSLT 487
L LD+S N LTS+ + L+ L+L N L+ P L P + S++NN+LT
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
Query: 488 GEIPSSFCN-LSSIQYLDLSNNSL 510
E+P+ N L ++ L L NSL
Sbjct: 162 -ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 751 LQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810
LQ++ L T+DLS N+ Q +P + L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 811 LDLSSNKLAGRIP 823
L L N+L P
Sbjct: 129 LYLKGNELKTLPP 141
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 89/209 (42%), Gaps = 39/209 (18%)
Query: 461 DSNSLQGSLPDLPPHMVSFSISNN-----SLTGEIPSSF--------CNLSSIQY----- 502
D L PDLP +S N SL +P + C L+ +Q
Sbjct: 18 DKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP 77
Query: 503 ----LDLSNNSLSGQIPQCLGNS--TLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGN 555
LDLS+N L Q LG + L LD+ N S+P +G +L L L GN
Sbjct: 78 VLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 134
Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQTFA 613
L+ P LT KL+ L + NN L+ ++P L G L L ++ N+ ++P+ F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Query: 614 KSCVLVSLNLNGNRLKGPLPPSLVNCQYL 642
S +L L+GN P L NC+ L
Sbjct: 193 GSHLLPFAFLHGN-------PWLCNCEIL 214
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 28/141 (19%)
Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
TKL + + P L LDLS + P +T L +LD+S N++ + +G
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG--- 124
Query: 434 LIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDL---PPHMVSFSISNNSLTGEI 490
L+ L+L N L+ P L P + S++NN LT E+
Sbjct: 125 --------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-EL 163
Query: 491 PSSFCN-LSSIQYLDLSNNSL 510
P+ N L ++ L L NSL
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
LP L L+L+ N + P+LT+LD+ S N S+P + +L L L
Sbjct: 76 LPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQELYL 131
Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230
N P + +L L L +NN + ++PA L N + L L L NS IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 231 SF 232
F
Sbjct: 190 GF 191
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 20/120 (16%)
Query: 539 QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNS--TLQV 596
Q N C+LT L++ G LP L LD+ +N L Q LG + L V
Sbjct: 59 QLNLDRCELTKLQVDGT-----LP-------VLGTLDLSHNQL--QSLPLLGQTLPALTV 104
Query: 597 LDMRMNNFSGSLPQTFAKSC-VLVSLNLNGNRLKGPLPPSLVN-CQYLEVLDVGNNQIDD 654
LD+ N + SLP + L L L GN LK LPP L+ LE L + NNQ+ +
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLTE 162
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 751 LQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810
LQ++ L T+DLS N+ Q +P + L +L L++S N LT +LR L EL+
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 811 LDLSSNKLAGRIP 823
L L N+L P
Sbjct: 129 LYLKGNELKTLPP 141
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 89/209 (42%), Gaps = 39/209 (18%)
Query: 461 DSNSLQGSLPDLPPHMVSFSISNN-----SLTGEIPSSF--------CNLSSIQY----- 502
D L PDLP +S N SL +P + C L+ +Q
Sbjct: 18 DKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLP 77
Query: 503 ----LDLSNNSLSGQIPQCLGNS--TLETLDLRMNNFQGSIPQTNAKGC-KLTYLRLSGN 555
LDLS+N L Q LG + L LD+ N S+P +G +L L L GN
Sbjct: 78 VLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGN 134
Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL--GNSTLQVLDMRMNNFSGSLPQTFA 613
L+ P LT KL+ L + NN L+ ++P L G L L ++ N+ ++P+ F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192
Query: 614 KSCVLVSLNLNGNRLKGPLPPSLVNCQYL 642
S +L L+GN P L NC+ L
Sbjct: 193 GSHLLPFAFLHGN-------PWLCNCEIL 214
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 28/141 (19%)
Query: 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
TKL + + P L LDLS + P +T L +LD+S N++ + +G
Sbjct: 68 TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG--- 124
Query: 434 LIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDL---PPHMVSFSISNNSLTGEI 490
L+ L+L N L+ P L P + S++NN LT E+
Sbjct: 125 --------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-EL 163
Query: 491 PSSFCN-LSSIQYLDLSNNSL 510
P+ N L ++ L L NSL
Sbjct: 164 PAGLLNGLENLDTLLLQENSL 184
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170
LP L L+L+ N + P+LT+LD+ S N S+P + +L L L
Sbjct: 76 LPVLGTLDLSHNQLQSLPL---LGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQELYL 131
Query: 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230
N P + +L L L +NN + ++PA L N + L L L NS IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSL-ANNQLTELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 231 SF 232
F
Sbjct: 190 GF 191
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 55/120 (45%), Gaps = 20/120 (16%)
Query: 539 QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNS--TLQV 596
Q N C+LT L++ G LP L LD+ +N L Q LG + L V
Sbjct: 59 QLNLDRCELTKLQVDGT-----LP-------VLGTLDLSHNQL--QSLPLLGQTLPALTV 104
Query: 597 LDMRMNNFSGSLPQTFAKSC-VLVSLNLNGNRLKGPLPPSLVN-CQYLEVLDVGNNQIDD 654
LD+ N + SLP + L L L GN LK LPP L+ LE L + NNQ+ +
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNQLTE 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 778 VGKLNSLKSLNISHNNLTGC-IPSSLRNLTELESLDLSSNKL 818
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 381 SFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
SFP L LDLS C I D ++ L L L+ N I G+ +L +L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVA 108
Query: 440 SRNFLTSIDHLP---WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCN 496
L S+++ P K L+ L++ N +Q SF ++P F N
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQ-----------SF---------KLPEYFSN 148
Query: 497 LSSIQYLDLSNNSL 510
L+++++LDLS+N +
Sbjct: 149 LTNLEHLDLSSNKI 162
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 104/252 (41%), Gaps = 49/252 (19%)
Query: 115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINS 174
+ L+L+FN S F+ FP L +LDL C +I +++ L+ L L+ N
Sbjct: 32 KNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 88
Query: 175 FIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN----NITQLAYLDLSSNSF-SGHIP 229
+FS L L+ L N ASL N ++ L L+++ N S +P
Sbjct: 89 IQSLALGAFSGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNLIQSFKLP 143
Query: 230 SSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW 289
FSNL T L +LDLSSN + L Q+
Sbjct: 144 EYFSNL-------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPL 178
Query: 290 LNLEYN------NFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSF 342
LNL + NF+ P F + +L L L N+L S+P IF+ L +L +I+L
Sbjct: 179 LNLSLDLSLNPMNFIQ--PGAFKEI-RLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHT 234
Query: 343 SNFSGSVELYDF 354
+ + S D+
Sbjct: 235 NPWDCSCPRIDY 246
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 778 VGKLNSLKSLNISHNNLTGC-IPSSLRNLTELESLDLSSNKL 818
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 381 SFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
SFP L LDLS C I D ++ L L L+ N I G+ +L +L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS--GLSSLQKLVA 107
Query: 440 SRNFLTSIDHLP---WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCN 496
L S+++ P K L+ L++ N +Q SF ++P F N
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQ-----------SF---------KLPEYFSN 147
Query: 497 LSSIQYLDLSNNSL 510
L+++++LDLS+N +
Sbjct: 148 LTNLEHLDLSSNKI 161
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 104/252 (41%), Gaps = 49/252 (19%)
Query: 115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINS 174
+ L+L+FN S F+ FP L +LDL C +I +++ L+ L L+ N
Sbjct: 31 KNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87
Query: 175 FIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN----NITQLAYLDLSSNSF-SGHIP 229
+FS L L+ L N ASL N ++ L L+++ N S +P
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 230 SSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW 289
FSNL T L +LDLSSN + L Q+
Sbjct: 143 EYFSNL-------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177
Query: 290 LNLEYN------NFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSF 342
LNL + NF+ P F + +L L L N+L S+P IF+ L +L +I+L
Sbjct: 178 LNLSLDLSLNPMNFIQ--PGAFKEI-RLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHT 233
Query: 343 SNFSGSVELYDF 354
+ + S D+
Sbjct: 234 NPWDCSCPRIDY 245
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 695 MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQME 754
++ S+NQLT + PL L ++ NN ++ L +N + D+
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDPL 125
Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLS 814
+ LT ++LSSN I + G L SL+ LN N +T P L NLT LE LD+S
Sbjct: 126 KNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFG-NQVTDLKP--LANLTTLERLDIS 180
Query: 815 SNKLA 819
SNK++
Sbjct: 181 SNKVS 185
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 29/192 (15%)
Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220
N+T+L + ++ N P +NL L L L +N P N+T L L+LS
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELS 137
Query: 221 SNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSG-HIP 278
SN+ S S ++LQQL + N P + N+T L LD+SSN S +
Sbjct: 138 SNTISDISALSGLTSLQQLNF----GNQVTDLKPLA---NLTTLERLDISSNKVSDISVL 190
Query: 279 SSFSNLQQLLWLNLEYNNFVGKIP--DMFTNLTQLSFLGLAYNEL--IGSIPSSIFELLN 334
+ +NL+ L + NN + I + TNL +LS G N+L IG++ S L N
Sbjct: 191 AKLTNLESL----IATNNQISDITPLGILTNLDELSLNG---NQLKDIGTLAS----LTN 239
Query: 335 LTEIYLSFSNFS 346
LT++ L+ + S
Sbjct: 240 LTDLDLANNQIS 251
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 84/200 (42%), Gaps = 41/200 (20%)
Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLD--LQSNNFVGKIPA----------SLG 208
N+T L LD+S N S S L +L +L+ + +NN + I SL
Sbjct: 170 NLTTLERLDISSNKV-----SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 224
Query: 209 NN----------ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGN 258
N +T L LDL++N S P S L +L L L N P +
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--- 279
Query: 259 NITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAY 318
+T L L+L+ N P SNL+ L +L L +NN P ++LT+L L Y
Sbjct: 280 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFY 334
Query: 319 NELIGSIPSSIFELLNLTEI 338
N + + S L NLT I
Sbjct: 335 NNKVSDVSS----LANLTNI 350
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 91/211 (43%), Gaps = 23/211 (10%)
Query: 382 FPNLSALDLSACNISEFP--DNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
NL+ L+LS+ IS+ L + QL G ++ + TL LD+
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLNF--------GNQVTDLKPLANLTTLERLDI 179
Query: 440 SRNFLTSIDHLP-WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG---EIPSSFC 495
S N ++ I L NLE L +N + D+ P + ++ SL G + +
Sbjct: 180 SSNKVSDISVLAKLTNLESLIATNNQIS----DITPLGILTNLDELSLNGNQLKDIGTLA 235
Query: 496 NLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN 555
+L+++ LDL+NN +S P G + L L L N P A LT L L+ N
Sbjct: 236 SLTNLTDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISPL--AGLTALTNLELNEN 292
Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIP 586
LE P ++N L +L + NN+S P
Sbjct: 293 QLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 765 LSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIP 823
L ++R K + V LN+L +N S+N LT P L+NLT+L + +++N++A P
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 102
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 778 VGKLNSLKSLNISHNNLTGC-IPSSLRNLTELESLDLSSNKL 818
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 381 SFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
SFP L LDLS C I D ++ L L L+ N I G+ +L +L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVA 109
Query: 440 SRNFLTSIDHLP---WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCN 496
L S+++ P K L+ L++ N +Q SF ++P F N
Sbjct: 110 LETNLASLENFPIGHLKTLKELNVAHNLIQ-----------SF---------KLPEYFSN 149
Query: 497 LSSIQYLDLSNNSL 510
L+++++LDLS+N +
Sbjct: 150 LTNLEHLDLSSNKI 163
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 104/252 (41%), Gaps = 49/252 (19%)
Query: 115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINS 174
+ L+L+FN S F+ FP L +LDL C +I +++ L+ L L+ N
Sbjct: 33 KNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 89
Query: 175 FIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN----NITQLAYLDLSSNSF-SGHIP 229
+FS L L+ L N ASL N ++ L L+++ N S +P
Sbjct: 90 IQSLALGAFSGLSSLQKLVALETNL-----ASLENFPIGHLKTLKELNVAHNLIQSFKLP 144
Query: 230 SSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW 289
FSNL T L +LDLSSN + L Q+
Sbjct: 145 EYFSNL-------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPL 179
Query: 290 LNLEYN------NFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSF 342
LNL + NF+ P F + +L L L N+L S+P IF+ L +L +I+L
Sbjct: 180 LNLSLDLSLNPMNFIQ--PGAFKEI-RLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHT 235
Query: 343 SNFSGSVELYDF 354
+ + S D+
Sbjct: 236 NPWDCSCPRIDY 247
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 778 VGKLNSLKSLNISHNNLTGC-IPSSLRNLTELESLDLSSNKL 818
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 381 SFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
SFP L LDLS C I D ++ L L L+ N I G+ +L +L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVA 108
Query: 440 SRNFLTSIDHLP---WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCN 496
L S+++ P K L+ L++ N +Q SF ++P F N
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQ-----------SF---------KLPEYFSN 148
Query: 497 LSSIQYLDLSNNSL 510
L+++++LDLS+N +
Sbjct: 149 LTNLEHLDLSSNKI 162
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 104/252 (41%), Gaps = 49/252 (19%)
Query: 115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINS 174
+ L+L++N S F+ FP L +LDL C +I +++ L+ L L+ N
Sbjct: 32 KNLDLSWNPLRHLGSYSFFS--FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 88
Query: 175 FIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN----NITQLAYLDLSSNSF-SGHIP 229
+FS L L+ L N ASL N ++ L L+++ N S +P
Sbjct: 89 IQSLALGAFSGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNLIQSFKLP 143
Query: 230 SSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW 289
FSNL T L +LDLSSN + L Q+
Sbjct: 144 EYFSNL-------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPL 178
Query: 290 LNLEYN------NFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSF 342
LNL + NF+ P F + +L L L N+L S+P IF+ L +L +I+L
Sbjct: 179 LNLSLDLSLNPMNFIQ--PGAFKEI-RLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHT 234
Query: 343 SNFSGSVELYDF 354
+ + S D+
Sbjct: 235 NPWDCSCPRIDY 246
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 695 MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQME 754
++ S+NQLT + PL L ++ NN ++ L +N + D+
Sbjct: 68 INFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDPL 125
Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLS 814
+ LT ++LSSN I + G L SL+ LN N +T P L NLT LE LD+S
Sbjct: 126 KNLTNLNRLELSSNTI-SDISALSG-LTSLQQLNFG-NQVTDLKP--LANLTTLERLDIS 180
Query: 815 SNKLA 819
SNK++
Sbjct: 181 SNKVS 185
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 29/192 (15%)
Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220
N+T+L + ++ N P +NL L L L +N P N+T L L+LS
Sbjct: 83 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELS 137
Query: 221 SNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSG-HIP 278
SN+ S S ++LQQL + N P + N+T L LD+SSN S +
Sbjct: 138 SNTISDISALSGLTSLQQLNF----GNQVTDLKPLA---NLTTLERLDISSNKVSDISVL 190
Query: 279 SSFSNLQQLLWLNLEYNNFVGKIP--DMFTNLTQLSFLGLAYNEL--IGSIPSSIFELLN 334
+ +NL+ L + NN + I + TNL +LS G N+L IG++ S L N
Sbjct: 191 AKLTNLESL----IATNNQISDITPLGILTNLDELSLNG---NQLKDIGTLAS----LTN 239
Query: 335 LTEIYLSFSNFS 346
LT++ L+ + S
Sbjct: 240 LTDLDLANNQIS 251
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 85/200 (42%), Gaps = 41/200 (20%)
Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLD--LQSNNFVGKIPA----------SLG 208
N+T L LD+S N S S L +L +L+ + +NN + I SL
Sbjct: 170 NLTTLERLDISSNKV-----SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 224
Query: 209 NN----------ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGN 258
N +T L LDL++N S P S L +L L L N P +
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--- 279
Query: 259 NITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAY 318
+T L L+L+ N P SNL+ L +L L +NN P ++LT+L L +
Sbjct: 280 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSN 335
Query: 319 NELIGSIPSSIFELLNLTEI 338
N++ S + L NLT I
Sbjct: 336 NKV-----SDVSSLANLTNI 350
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 91/211 (43%), Gaps = 23/211 (10%)
Query: 382 FPNLSALDLSACNISEFP--DNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
NL+ L+LS+ IS+ L + QL G ++ + TL LD+
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLNF--------GNQVTDLKPLANLTTLERLDI 179
Query: 440 SRNFLTSIDHLP-WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG---EIPSSFC 495
S N ++ I L NLE L +N + D+ P + ++ SL G + +
Sbjct: 180 SSNKVSDISVLAKLTNLESLIATNNQIS----DITPLGILTNLDELSLNGNQLKDIGTLA 235
Query: 496 NLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN 555
+L+++ LDL+NN +S P G + L L L N P A LT L L+ N
Sbjct: 236 SLTNLTDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISPL--AGLTALTNLELNEN 292
Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIP 586
LE P ++N L +L + NN+S P
Sbjct: 293 QLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 765 LSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIP 823
L ++R K + V LN+L +N S+N LT P L+NLT+L + +++N++A P
Sbjct: 46 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 102
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 778 VGKLNSLKSLNISHNNLTGC-IPSSLRNLTELESLDLSSNKL 818
+G L +LK LN++HN + +P NLT LE LDLSSNK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 381 SFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
SFP L LDLS C I D ++ L L L+ N I G+ +L +L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVA 109
Query: 440 SRNFLTSIDHLP---WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCN 496
L S+++ P K L+ L++ N +Q SF ++P F N
Sbjct: 110 VETNLASLENFPIGHLKTLKELNVAHNLIQ-----------SF---------KLPEYFSN 149
Query: 497 LSSIQYLDLSNNSL 510
L+++++LDLS+N +
Sbjct: 150 LTNLEHLDLSSNKI 163
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 104/252 (41%), Gaps = 49/252 (19%)
Query: 115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINS 174
+ L+L++N S F+ FP L +LDL C +I +++ L+ L L+ N
Sbjct: 33 KNLDLSWNPLRHLGSYSFFS--FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 89
Query: 175 FIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN----NITQLAYLDLSSNSF-SGHIP 229
+FS L L+ L N ASL N ++ L L+++ N S +P
Sbjct: 90 IQSLALGAFSGLSSLQKLVAVETNL-----ASLENFPIGHLKTLKELNVAHNLIQSFKLP 144
Query: 230 SSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW 289
FSNL T L +LDLSSN + L Q+
Sbjct: 145 EYFSNL-------------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPL 179
Query: 290 LNLEYN------NFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSF 342
LNL + NF+ P F + +L L L N+L S+P IF+ L +L +I+L
Sbjct: 180 LNLSLDLSLNPMNFIQ--PGAFKEI-RLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHT 235
Query: 343 SNFSGSVELYDF 354
+ + S D+
Sbjct: 236 NPWDCSCPRIDY 247
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 15/151 (9%)
Query: 146 CSCNFT---------GSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQS 196
CSC+ T S+P + N Q+ YL N P F +L L+ L L S
Sbjct: 17 CSCSGTTVDCRSKRHASVPAGIPTN-AQILYL--HDNQITKLEPGVFDSLINLKELYLGS 73
Query: 197 NNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASL 256
N G +P + +++TQL LDL +N + + F L L L + N E+P +
Sbjct: 74 NQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI 131
Query: 257 GNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
+T L +L L N +F L L
Sbjct: 132 -ERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 250 GEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIP-DMFTNL 308
+PA + N Q+ YL N + P F +L L L L N G +P +F +L
Sbjct: 32 ASVPAGIPTN-AQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL 87
Query: 309 TQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYLSFSNFS 346
TQL+ L L N+L +PS++F+ L++L E+++ + +
Sbjct: 88 TQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT 125
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 101/426 (23%), Positives = 167/426 (39%), Gaps = 71/426 (16%)
Query: 176 IGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNL 235
+ IPS + ++ LDL SNN + I S L L L+SN + SFS+L
Sbjct: 17 LNSIPSGLT--EAVKSLDL-SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 73
Query: 236 QQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSS-FSNLQQLLWLNLEY 294
L +LDL N ++ + +S ++ L +L+L N + +S FS+L +L L +
Sbjct: 74 GSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 132
Query: 295 NNFVGKIPDM-FTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLS----------FS 343
+ KI F LT L L + ++L P S+ + N++ + L F
Sbjct: 133 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 192
Query: 344 NFSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLTANSSFPNLSALDLSACNISEFPDNLR 403
+ + SVE + + L +F N+ D S + + + +
Sbjct: 193 DVTSSVECLELRDTDLDTFHFSELSTGETNS-LIKKFTFRNVKITDESLFQVMKLLNQIS 251
Query: 404 TQHQLELLDLSENQIGG-----------------------RIPSWMWDIGVHTL------ 434
+LE D + N +G IP + + TL
Sbjct: 252 GLLELEFDDCTLNGVGNFRASDNDRVIDPGKVETLTIRRLHIPRFYLFYDLSTLYSLTER 311
Query: 435 ---IELDLSRNFLTSI---DHLPWKNLEYLHLDSNSL------QGSLPDLPPHMVSFSIS 482
I ++ S+ FL HL K+LEYL L N + + D P + + +
Sbjct: 312 VKRITVENSKVFLVPCLLSQHL--KSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILR 369
Query: 483 NNSL-----TGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDL---RMNNFQ 534
N L TGE + NL++I D+S NS C ++ L+L R+++
Sbjct: 370 QNHLASLEKTGETLLTLKNLTNI---DISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVT 426
Query: 535 GSIPQT 540
G IP+T
Sbjct: 427 GCIPKT 432
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 18/173 (10%)
Query: 146 CSCNFTGSIPPSLGNNITQLAYLDLSINSF----IGHIPSSFSNLHQLRHLDLQSNNFVG 201
CS ++P SL + A LDLS N+ P+ +NLH L L S+N +
Sbjct: 25 CSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSL----LLSHNHLN 77
Query: 202 KIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT 261
I + + L YLDLSSN FS+LQ L L L +NH V + + ++
Sbjct: 78 FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMA 136
Query: 262 QLAYLDLSSNG---FSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQL 311
QL L LS N F + + L +L+ L+L N + K+P T+L +L
Sbjct: 137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLP--LTDLQKL 186
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 9/155 (5%)
Query: 137 FPSLT-LLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ 195
PS T LLDL N + +T L L LS N +F + LR+LDL
Sbjct: 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96
Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255
SN+ + + L +++ L L L +N ++F ++ QL L L N + P
Sbjct: 97 SNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVE 154
Query: 256 L---GNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
L GN + +L LDLSSN +P ++LQ+L
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKK-LP--LTDLQKL 186
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 410 LLDLSENQIGGRIPSWMWD--IGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQG 467
LLDLS N + W +H+L+ NF++S +P NL YL L SN L
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 468 SLPDLPPHMVSFSI---SNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
L + + + NN + ++F +++ +Q L LS N +S
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 761 ATIDLSSNRFQRKIPEVV-GKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKL 818
A +DLS N R E +L +L SL +SHN+L + + L LDLSSN L
Sbjct: 42 ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 29/192 (15%)
Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220
N+T+L + ++ N P +NL L L L +N P N+T L L+LS
Sbjct: 87 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELS 141
Query: 221 SNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSG-HIP 278
SN+ S S ++LQQL + N P + N+T L LD+SSN S +
Sbjct: 142 SNTISDISALSGLTSLQQLSF----GNQVTDLKPLA---NLTTLERLDISSNKVSDISVL 194
Query: 279 SSFSNLQQLLWLNLEYNNFVGKIP--DMFTNLTQLSFLGLAYNEL--IGSIPSSIFELLN 334
+ +NL+ L + NN + I + TNL +LS G N+L IG++ S L N
Sbjct: 195 AKLTNLESL----IATNNQISDITPLGILTNLDELSLNG---NQLKDIGTLAS----LTN 243
Query: 335 LTEIYLSFSNFS 346
LT++ L+ + S
Sbjct: 244 LTDLDLANNQIS 255
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 695 MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQME 754
++ S+NQLT + PL L ++ NN ++ L +N + D+
Sbjct: 72 INFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDPL 129
Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLS 814
+ LT ++LSSN I + G L SL+ L+ N +T P L NLT LE LD+S
Sbjct: 130 KNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFG-NQVTDLKP--LANLTTLERLDIS 184
Query: 815 SNKLA 819
SNK++
Sbjct: 185 SNKVS 189
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 85/200 (42%), Gaps = 41/200 (20%)
Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLD--LQSNNFVGKIPA----------SLG 208
N+T L LD+S N S S L +L +L+ + +NN + I SL
Sbjct: 174 NLTTLERLDISSNKV-----SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 228
Query: 209 NN----------ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGN 258
N +T L LDL++N S P S L +L L L N P +
Sbjct: 229 GNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--- 283
Query: 259 NITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAY 318
+T L L+L+ N P SNL+ L +L L +NN P ++LT+L L A
Sbjct: 284 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFAN 339
Query: 319 NELIGSIPSSIFELLNLTEI 338
N++ S + L NLT I
Sbjct: 340 NKV-----SDVSSLANLTNI 354
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 91/211 (43%), Gaps = 23/211 (10%)
Query: 382 FPNLSALDLSACNISEFP--DNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
NL+ L+LS+ IS+ L + QL G ++ + TL LD+
Sbjct: 132 LTNLNRLELSSNTISDISALSGLTSLQQLSF--------GNQVTDLKPLANLTTLERLDI 183
Query: 440 SRNFLTSIDHLP-WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG---EIPSSFC 495
S N ++ I L NLE L +N + D+ P + ++ SL G + +
Sbjct: 184 SSNKVSDISVLAKLTNLESLIATNNQIS----DITPLGILTNLDELSLNGNQLKDIGTLA 239
Query: 496 NLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN 555
+L+++ LDL+NN +S P G + L L L N P A LT L L+ N
Sbjct: 240 SLTNLTDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISPL--AGLTALTNLELNEN 296
Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIP 586
LE P ++N L +L + NN+S P
Sbjct: 297 QLEDISP--ISNLKNLTYLTLYFNNISDISP 325
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 765 LSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIP 823
L ++R K + V LN+L +N S+N LT P L+NLT+L + +++N++A P
Sbjct: 50 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 106
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 29/192 (15%)
Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220
N+T+L + ++ N P +NL L L L +N P N+T L L+LS
Sbjct: 88 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK---NLTNLNRLELS 142
Query: 221 SNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSG-HIP 278
SN+ S S ++LQQL + N P + N+T L LD+SSN S +
Sbjct: 143 SNTISDISALSGLTSLQQLSF----GNQVTDLKPLA---NLTTLERLDISSNKVSDISVL 195
Query: 279 SSFSNLQQLLWLNLEYNNFVGKIP--DMFTNLTQLSFLGLAYNEL--IGSIPSSIFELLN 334
+ +NL+ L + NN + I + TNL +LS G N+L IG++ S L N
Sbjct: 196 AKLTNLESL----IATNNQISDITPLGILTNLDELSLNG---NQLKDIGTLAS----LTN 244
Query: 335 LTEIYLSFSNFS 346
LT++ L+ + S
Sbjct: 245 LTDLDLANNQIS 256
Score = 37.4 bits (85), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 695 MDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQME 754
++ S+NQLT + PL L ++ NN ++ L +N + D+
Sbjct: 73 INFSNNQLTDITPLKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDIDPL 130
Query: 755 RILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLS 814
+ LT ++LSSN I + G L SL+ L+ N +T P L NLT LE LD+S
Sbjct: 131 KNLTNLNRLELSSNTI-SDISALSG-LTSLQQLSFG-NQVTDLKP--LANLTTLERLDIS 185
Query: 815 SNKLA 819
SNK++
Sbjct: 186 SNKVS 190
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 84/200 (42%), Gaps = 41/200 (20%)
Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLD--LQSNNFVGKIPA----------SLG 208
N+T L LD+S N S S L +L +L+ + +NN + I SL
Sbjct: 175 NLTTLERLDISSNKV-----SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 229
Query: 209 NN----------ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGN 258
N +T L LDL++N S P S L +L L L N P +
Sbjct: 230 GNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA--- 284
Query: 259 NITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAY 318
+T L L+L+ N P SNL+ L +L L +NN P ++LT+L L Y
Sbjct: 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL-FFY 339
Query: 319 NELIGSIPSSIFELLNLTEI 338
N + + S L NLT I
Sbjct: 340 NNKVSDVSS----LANLTNI 355
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 91/211 (43%), Gaps = 23/211 (10%)
Query: 382 FPNLSALDLSACNISEFP--DNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDL 439
NL+ L+LS+ IS+ L + QL G ++ + TL LD+
Sbjct: 133 LTNLNRLELSSNTISDISALSGLTSLQQLSF--------GNQVTDLKPLANLTTLERLDI 184
Query: 440 SRNFLTSIDHLP-WKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG---EIPSSFC 495
S N ++ I L NLE L +N + D+ P + ++ SL G + +
Sbjct: 185 SSNKVSDISVLAKLTNLESLIATNNQIS----DITPLGILTNLDELSLNGNQLKDIGTLA 240
Query: 496 NLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN 555
+L+++ LDL+NN +S P G + L L L N P A LT L L+ N
Sbjct: 241 SLTNLTDLDLANNQISNLAPLS-GLTKLTELKLGANQISNISPL--AGLTALTNLELNEN 297
Query: 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIP 586
LE P ++N L +L + NN+S P
Sbjct: 298 QLEDISP--ISNLKNLTYLTLYFNNISDISP 326
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 765 LSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIP 823
L ++R K + V LN+L +N S+N LT P L+NLT+L + +++N++A P
Sbjct: 51 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP 107
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 53/244 (21%)
Query: 437 LDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCN 496
LDL N +T I +KNL+ LH + + NN ++ P +F
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLH------------------TLILINNKISKISPGAFAP 98
Query: 497 LSSIQYLDLSNNSLS---GQIPQCLGNSTL---ETLDLRMNNFQG--------------- 535
L ++ L LS N L ++P+ L + E +R + F G
Sbjct: 99 LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 536 --SIPQTNAKGC-KLTYLRLSGNHL----EGPLPPSLTNCVKLQFLDVGNNNLSGQIPEC 588
I +G KL+Y+R++ ++ +G LPPSLT LD GN
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTEL----HLD-GNKITKVDAASL 212
Query: 589 LGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVG 648
G + L L + N+ S + A + L L+LN N+L +P L + +Y++V+ +
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLH 271
Query: 649 NNQI 652
NN I
Sbjct: 272 NNNI 275
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 104/257 (40%), Gaps = 42/257 (16%)
Query: 264 AYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI-PDMFTNLTQLSFLGLAYN--- 319
A LDL +N + F NL+ L L L NN + KI P F L +L L L+ N
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLIL-INNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 320 ELIGSIPSSIFELL----NLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXXXXTK 375
EL +P ++ EL +T++ S N + + +
Sbjct: 114 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-------- 165
Query: 376 LTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLI 435
A LS + ++ NI+ P L L L L N+I + + G++ L
Sbjct: 166 --AFQGMKKLSYIRIADTNITTIPQGLPPS--LTELHLDGNKITKVDAASLK--GLNNLA 219
Query: 436 ELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFC 495
+L LS N ++++D+ GSL + P H+ ++NN L ++P
Sbjct: 220 KLGLSFNSISAVDN-----------------GSLANTP-HLRELHLNNNKLV-KVPGGLA 260
Query: 496 NLSSIQYLDLSNNSLSG 512
+ IQ + L NN++S
Sbjct: 261 DHKYIQVVYLHNNNISA 277
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 385 LSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFL 444
L L LS + E P+ + L+ L + EN+I ++ +++ G++ +I ++L N L
Sbjct: 102 LERLYLSKNQLKELPE--KMPKTLQELRVHENEIT-KVRKSVFN-GLNQMIVVELGTNPL 157
Query: 445 TS--IDHLPW---KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSS 499
S I++ + K L Y+ + ++ LPP + + N +T +S L++
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN 217
Query: 500 IQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNN 532
+ L LS NS+S L N T +L +NN
Sbjct: 218 LAKLGLSFNSISAVDNGSLAN-TPHLRELHLNN 249
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 10/162 (6%)
Query: 471 DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLR 529
DLPP + NN +T F NL ++ L L NN +S P LE L L
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 530 MNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPE-- 587
N + +P+ K L LR+ N + ++ +++G N L E
Sbjct: 109 KNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 588 -CLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRL 628
G L + + N + ++PQ S L L+L+GN++
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKI 204
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 101/244 (41%), Gaps = 53/244 (21%)
Query: 437 LDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCN 496
LDL N +T I +KNL+ LH + + NN ++ P +F
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLH------------------TLILINNKISKISPGAFAP 98
Query: 497 LSSIQYLDLSNNSLS---GQIPQCLGNSTL---ETLDLRMNNFQG--------------- 535
L ++ L LS N L ++P+ L + E +R + F G
Sbjct: 99 LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 536 --SIPQTNAKGC-KLTYLRLSGNHL----EGPLPPSLTNCVKLQFLDVGNNNLSGQIPEC 588
I +G KL+Y+R++ ++ +G LPPSLT LD GN
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTEL----HLD-GNKITKVDAASL 212
Query: 589 LGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVG 648
G + L L + N+ S + A + L L+LN N+L +P L + +Y++V+ +
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLH 271
Query: 649 NNQI 652
NN I
Sbjct: 272 NNNI 275
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 104/257 (40%), Gaps = 42/257 (16%)
Query: 264 AYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI-PDMFTNLTQLSFLGLAYN--- 319
A LDL +N + F NL+ L L L NN + KI P F L +L L L+ N
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLIL-INNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 320 ELIGSIPSSIFELL----NLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXXXXTK 375
EL +P ++ EL +T++ S N + + +
Sbjct: 114 ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG-------- 165
Query: 376 LTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLI 435
A LS + ++ NI+ P L L L L N+I + + G++ L
Sbjct: 166 --AFQGMKKLSYIRIADTNITTIPQGLPPS--LTELHLDGNKITKVDAASLK--GLNNLA 219
Query: 436 ELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFC 495
+L LS N ++++D+ GSL + P H+ ++NN L ++P
Sbjct: 220 KLGLSFNSISAVDN-----------------GSLANTP-HLRELHLNNNKLV-KVPGGLA 260
Query: 496 NLSSIQYLDLSNNSLSG 512
+ IQ + L NN++S
Sbjct: 261 DHKYIQVVYLHNNNISA 277
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 385 LSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFL 444
L L LS + E P+ + L+ L + EN+I ++ +++ G++ +I ++L N L
Sbjct: 102 LERLYLSKNQLKELPE--KMPKTLQELRVHENEIT-KVRKSVFN-GLNQMIVVELGTNPL 157
Query: 445 TS--IDHLPW---KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSS 499
S I++ + K L Y+ + ++ LPP + + N +T +S L++
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN 217
Query: 500 IQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNN 532
+ L LS NS+S L N T +L +NN
Sbjct: 218 LAKLGLSFNSISAVDNGSLAN-TPHLRELHLNN 249
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 10/162 (6%)
Query: 471 DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLR 529
DLPP + NN +T F NL ++ L L NN +S P LE L L
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 530 MNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPE-- 587
N + +P+ K L LR+ N + ++ +++G N L E
Sbjct: 109 KNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165
Query: 588 -CLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRL 628
G L + + N + ++PQ S L L+L+GN++
Sbjct: 166 AFQGMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKI 204
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 547 LTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPE-CLGNSTLQVLDMRMNNFS 605
+T L L+ N L + T +L LDVG N +S PE C L+VL+++ N S
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 606 GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDT 655
+TFA L L+L N ++ V + L LD+ +N + T
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 211 ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDN-------HFVGEIPASLGNNITQL 263
+ L LDLS+N+ + L++L LDL N H P ++ L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538
Query: 264 AYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIG 323
L+L SNGF F +L +L ++L NN +F N L L L N LI
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LIT 597
Query: 324 SIPSSIF--ELLNLTEIYLSFSNFSGSVE 350
S+ +F NLTE+ + F+ F + E
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPFDCTCE 626
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 249 VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNL 308
+ ++P L NIT L+L+ N ++F+ QL L++ +N P++ L
Sbjct: 16 LTQVPDDLPTNIT---VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL 72
Query: 309 TQLSFLGLAYNELIGSIPSSIFELLNLTEIYL 340
L L L +NEL + NLTE++L
Sbjct: 73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 760 FATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKL 818
++D+ N + PE+ KL LK LN+ HN L+ + T L L L SN +
Sbjct: 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 547 LTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPE-CLGNSTLQVLDMRMNNFS 605
+T L L+ N L + T +L LDVG N +S PE C L+VL+++ N S
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 606 GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDT 655
+TFA L L+L N ++ V + L LD+ +N + T
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 211 ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDN-------HFVGEIPASLGNNITQL 263
+ L LDLS+N+ + L++L LDL N H P ++ L
Sbjct: 489 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 548
Query: 264 AYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIG 323
L+L SNGF F +L +L ++L NN +F N L L L N LI
Sbjct: 549 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LIT 607
Query: 324 SIPSSIF--ELLNLTEIYLSFSNFSGSVE 350
S+ +F NLTE+ + F+ F + E
Sbjct: 608 SVEKKVFGPAFRNLTELDMRFNPFDCTCE 636
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 249 VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNL 308
+ ++P L NIT L+L+ N ++F+ QL L++ +N P++ L
Sbjct: 26 LTQVPDDLPTNIT---VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL 82
Query: 309 TQLSFLGLAYNELIGSIPSSIFELLNLTEIYL 340
L L L +NEL + NLTE++L
Sbjct: 83 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 114
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 760 FATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKL 818
++D+ N + PE+ KL LK LN+ HN L+ + T L L L SN +
Sbjct: 61 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 119
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 547 LTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPE-CLGNSTLQVLDMRMNNFS 605
+T L L+ N L + T +L LDVG N +S PE C L+VL+++ N S
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 606 GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDT 655
+TFA L L+L N ++ V + L LD+ +N + T
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 211 ITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDN-------HFVGEIPASLGNNITQL 263
+ L LDLS+N+ + L++L LDL N H P ++ L
Sbjct: 484 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 543
Query: 264 AYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIG 323
L+L SNGF F +L +L ++L NN +F N L L L N LI
Sbjct: 544 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LIT 602
Query: 324 SIPSSIF--ELLNLTEIYLSFSNFSGSVE 350
S+ +F NLTE+ + F+ F + E
Sbjct: 603 SVEKKVFGPAFRNLTELDMRFNPFDCTCE 631
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 249 VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNL 308
+ ++P L NIT L+L+ N ++F+ QL L++ +N P++ L
Sbjct: 21 LTQVPDDLPTNIT---VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL 77
Query: 309 TQLSFLGLAYNELIGSIPSSIFELLNLTEIYL 340
L L L +NEL + NLTE++L
Sbjct: 78 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 109
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 760 FATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKL 818
++D+ N + PE+ KL LK LN+ HN L+ + T L L L SN +
Sbjct: 56 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 114
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 101/277 (36%), Gaps = 40/277 (14%)
Query: 545 CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNF 604
L YL L+GN + P L+N VKL L +G N ++ I + L+ L + +N
Sbjct: 66 TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDNI 122
Query: 605 SGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWXXXXX 664
S P A SLNL N L P L N L L V +++ D P
Sbjct: 123 SDISP--LANLTKXYSLNLGANHNLSDLSP-LSNXTGLNYLTVTESKVKDVTPIANLTDL 179
Query: 665 XXXXXXXRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNS 724
+ I D L NQ+T + P+ ++ GNN
Sbjct: 180 YSLSLN------YNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNN-- 231
Query: 725 VEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSL 784
K DL L+ +++ +N+ V L L
Sbjct: 232 ----------------------KITDLSPLANLSQLTWLEIGTNQISD--INAVKDLTKL 267
Query: 785 KSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR 821
K LN+ N ++ S L NL++L SL L++N+L
Sbjct: 268 KXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE 302
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 161 NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220
N T L YL ++ + P +NL L L L N P + ++T L Y
Sbjct: 153 NXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLA---SLTSLHYFTAY 207
Query: 221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSS 280
N + P +N +L L + +N P + N++QL +L++ +N S ++
Sbjct: 208 VNQITDITP--VANXTRLNSLKIGNNKITDLSPLA---NLSQLTWLEIGTNQISD--INA 260
Query: 281 FSNLQQLLWLNLEYNNFVGKIPDM--FTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEI 338
+L +L LN+ N +I D+ NL+QL+ L L N+L I L NLT +
Sbjct: 261 VKDLTKLKXLNVGSN----QISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTL 316
Query: 339 YLS 341
+LS
Sbjct: 317 FLS 319
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 139/535 (25%), Positives = 212/535 (39%), Gaps = 103/535 (19%)
Query: 153 SIPPSLGNNITQLAYLDLSIN--SFIGHIP-SSFSNLHQLRHLDLQSNNFVGKIPASLGN 209
SIP L + LDLS N ++IGH + +NL L + N G SLG+
Sbjct: 45 SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 101
Query: 210 NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS 269
L +LDLS N S S F L L YL+L N + SL N+T L L +
Sbjct: 102 ----LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI- 156
Query: 270 SNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSI 329
G++ +FS ++++ +F G T+L +L L+ SI
Sbjct: 157 -----GNV-ETFSEIRRI--------DFAG-----LTSLNELEIKALSLRNYQSQSLKSI 197
Query: 330 FELLNLT----------EIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLT-- 377
++ +LT EI+ + +EL D KL
Sbjct: 198 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 257
Query: 378 ----ANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
+ SF L L +SE +E D + N +G PS +
Sbjct: 258 GSVLTDESFNELLKLLRYILELSE----------VEFDDCTLNGLGDFNPSESDVVSELG 307
Query: 434 LIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSS 493
+E R H+P YL D +++ L + V NS +P S
Sbjct: 308 KVETVTIRRL-----HIPQF---YLFYDLSTVYSLLEKVKRITV-----ENSKVFLVPCS 354
Query: 494 FC-NLSSIQYLDLSNNSLSGQIPQCLGNS-------TLETLDLRMNNFQ-----GSIPQT 540
F +L S+++LDLS N + + + L NS +L+TL L N+ + G I T
Sbjct: 355 FSQHLKSLEFLDLSENLM---VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 411
Query: 541 NAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMR 600
LT L +S N P+P S K++FL++ + + + C+ TL+VLD+
Sbjct: 412 LK---NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ-TLEVLDVS 465
Query: 601 MNN---FSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQI 652
NN FS LP+ L L ++ N+LK SL L V+ + +NQ+
Sbjct: 466 NNNLDSFSLFLPR-------LQELYISRNKLKTLPDASLF--PVLLVMKIASNQL 511
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 144 DLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIP---------SSFSNLHQLRHLDL 194
D C+ N G PS + +++L ++ ++ HIP + +S L +++ + +
Sbjct: 285 DDCTLNGLGDFNPSESDVVSELGKVE-TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 343
Query: 195 QSNNFVGKIPASLGNNITQLAYLDLSSNSF------SGHIPSSFSNLQQLCYLDLDDNHF 248
+ N+ V +P S ++ L +LDLS N + ++ +LQ L L NH
Sbjct: 344 E-NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV---LSQNHL 399
Query: 249 -----VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNL 292
GEI +L N L LD+S N F +P S +++ +LNL
Sbjct: 400 RSMQKTGEILLTLKN----LTSLDISRNTFHP-MPDSCQWPEKMRFLNL 443
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 381 SFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLS 440
+ NL++LD+S PD+ + ++ L+LS G R+ + TL LD+S
Sbjct: 411 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST--GIRV---VKTCIPQTLEVLDVS 465
Query: 441 RNFLTSID-HLPWKNLEYLHLDSNSLQGSLPD--LPPHMVSFSISNNSLTGEIPSSFCNL 497
N L S LP L+ L++ N L+ +LPD L P ++ I++N L F L
Sbjct: 466 NNNLDSFSLFLP--RLQELYISRNKLK-TLPDASLFPVLLVMKIASNQLKSVPDGIFDRL 522
Query: 498 SSIQYLDLSNNSLSGQIPQ 516
+S+Q + L N P+
Sbjct: 523 TSLQKIWLHTNPWDCSCPR 541
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 476 MVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQG 535
+ ++ NSLT E+P+ NLS+++ LDLS+N L+ +P LG+ +N
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 536 SIPQTNAKGCKLTYLRLSGNHLE 558
++P C L +L + GN LE
Sbjct: 307 TLPWEFGNLCNLQFLGVEGNPLE 329
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 547 LTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSG 606
LT L L+GN L LP + N L+ LD+ +N L+ +P LG+ +N
Sbjct: 249 LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 607 SLPQTFAKSCVLVSLNLNGNRLK 629
+LP F C L L + GN L+
Sbjct: 307 TLPWEFGNLCNLQFLGVEGNPLE 329
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 29/122 (23%)
Query: 437 LDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIP----- 491
LD+S N + + LP NL YL+ SN ++ SL DLPP + ++SNN L E+P
Sbjct: 282 LDVSENIFSGLSELP-PNLYYLNASSNEIR-SLCDLPPSLEELNVSNNKLI-ELPALPPR 338
Query: 492 -----SSFCNLSSI-------QYLDLSNNSLSG--QIPQCLGNSTLETLDLRMNNFQGSI 537
+SF +L+ + + L + N L IP+ + DLRMN+ +
Sbjct: 339 LERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVE-------DLRMNSHLAEV 391
Query: 538 PQ 539
P+
Sbjct: 392 PE 393
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 61/137 (44%), Gaps = 46/137 (33%)
Query: 467 GSLPDLPPHMVSFSISNNSLTG--EIPSSFCNL--------------SSIQYLDLSNNSL 510
SLP+LPPH+ S S NSLT E+P S +L ++YL +SNN L
Sbjct: 84 SSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL 143
Query: 511 SGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVK 570
++P+ +S L+ +D+ NN +P LPPS
Sbjct: 144 E-KLPELQNSSFLKIIDVD-NNSLKKLPD---------------------LPPS------ 174
Query: 571 LQFLDVGNNNLSGQIPE 587
L+F+ GNN L ++PE
Sbjct: 175 LEFIAAGNNQLE-ELPE 190
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 261 TQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNE 320
TQ+ YL N + P F L QL L+L+ N +F LTQL+ L L N+
Sbjct: 32 TQVLYL--YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 321 LIGSIPSSIFE-LLNLTEIYL 340
L SIP F+ L +LT I+L
Sbjct: 90 L-KSIPRGAFDNLRSLTHIWL 109
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 176 IGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNL 235
+ +P+ Q+ +L +N + K+ + + +TQL LDL +N + F L
Sbjct: 21 LASVPTGIPTTTQVLYL---YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 236 QQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGF 273
QL L L+DN IP +N+ L ++ L +N +
Sbjct: 78 TQLTQLSLNDNQL-KSIPRGAFDNLRSLTHIWLLNNPW 114
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 275 GHIPSSFSNLQQLLWLNLEYNNFVGKI-PDMFTNLTQLSFLGLAYNELIGSIPSSIFE-L 332
+P+ Q+L+L Y+N + K+ P +F LTQL+ L L N+L +P+ +F+ L
Sbjct: 22 ASVPTGIPTTTQVLYL---YDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 77
Query: 333 LNLTEIYL 340
LT++ L
Sbjct: 78 TQLTQLSL 85
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 756 ILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSS 815
I TT + L NR + P V +L L L++ +N LT LT+L L L+
Sbjct: 28 IPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87
Query: 816 NKL 818
N+L
Sbjct: 88 NQL 90
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 119 LAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGH 178
L D +K+ G D+ LT LDL + T +P + + +TQL L L+ N
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSI 93
Query: 179 IPSSFSNLHQLRHLDLQSN 197
+F NL L H+ L +N
Sbjct: 94 PRGAFDNLRSLTHIWLLNN 112
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
+D S S + +P+ Q+ YL DN P + +TQL LDL +N +
Sbjct: 14 VDCSGKSLAS-VPTGIPTTTQVLYLY--DNRITKLEPGVF-DRLTQLTRLDLDNNQLTVL 69
Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYN 319
F L QL L+L N F NL L+ + L N
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNN 112
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 261 TQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNE 320
TQ+ YL N + P F L QL L+L+ N +F LTQL+ L L N+
Sbjct: 40 TQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 97
Query: 321 LIGSIPSSIFE-LLNLTEIYL 340
L SIP F+ L +LT I+L
Sbjct: 98 L-KSIPRGAFDNLKSLTHIWL 117
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 176 IGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNL 235
+ +P+ Q+ +L +N + K+ + + +TQL LDL +N + F L
Sbjct: 29 LASVPTGIPTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 85
Query: 236 QQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN 271
QL L L+DN IP +N+ L ++ L +N
Sbjct: 86 TQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 120
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 275 GHIPSSFSNLQQLLWLNLEYNNFVGKI-PDMFTNLTQLSFLGLAYNELIGSIPSSIFE-L 332
+P+ Q+L+L Y+N + K+ P +F LTQL+ L L N+L +P+ +F+ L
Sbjct: 30 ASVPTGIPTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 85
Query: 333 LNLTEIYL 340
LT++ L
Sbjct: 86 TQLTQLSL 93
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
+D S S + +P+ Q+ YL DN P + +TQL LDL +N +
Sbjct: 22 VDCSGKSLAS-VPTGIPTTTQVLYLY--DNQITKLEPGVF-DRLTQLTRLDLDNNQLTVL 77
Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYN 319
F L QL L+L N F NL L+ + L N
Sbjct: 78 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 127 SKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL 186
+K+ G D+ LT LDL + T +P + + +TQL L L+ N +F NL
Sbjct: 51 TKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 109
Query: 187 HQLRHLDLQSN 197
L H+ L +N
Sbjct: 110 KSLTHIWLLNN 120
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 261 TQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNE 320
TQ+ YL N + P F L QL L+L+ N +F LTQL+ L L N+
Sbjct: 32 TQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 321 LIGSIPSSIFE-LLNLTEIYL 340
L SIP F+ L +LT I+L
Sbjct: 90 L-KSIPRGAFDNLKSLTHIWL 109
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 176 IGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNL 235
+ +P+ Q+ +L +N + K+ + + +TQL LDL +N + F L
Sbjct: 21 LASVPTGIPTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 236 QQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN 271
QL L L+DN IP +N+ L ++ L +N
Sbjct: 78 TQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 112
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 275 GHIPSSFSNLQQLLWLNLEYNNFVGKI-PDMFTNLTQLSFLGLAYNELIGSIPSSIFE-L 332
+P+ Q+L+L Y+N + K+ P +F LTQL+ L L N+L +P+ +F+ L
Sbjct: 22 ASVPTGIPTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 77
Query: 333 LNLTEIYL 340
LT++ L
Sbjct: 78 TQLTQLSL 85
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH 276
+D S S + +P+ Q+ YL DN P + +TQL LDL +N +
Sbjct: 14 VDCSGKSLAS-VPTGIPTTTQVLYLY--DNQITKLEPGVF-DRLTQLTRLDLDNNQLTVL 69
Query: 277 IPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYN 319
F L QL L+L N F NL L+ + L N
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 127 SKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL 186
+K+ G D+ LT LDL + T +P + + +TQL L L+ N +F NL
Sbjct: 43 TKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101
Query: 187 HQLRHLDLQSN 197
L H+ L +N
Sbjct: 102 KSLTHIWLLNN 112
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%)
Query: 756 ILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSS 815
I TT + L N+ + P V +L L L++ +N LT LT+L L L+
Sbjct: 28 IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87
Query: 816 NKL 818
N+L
Sbjct: 88 NQL 90
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 139/535 (25%), Positives = 211/535 (39%), Gaps = 103/535 (19%)
Query: 153 SIPPSLGNNITQLAYLDLSIN--SFIGHIP-SSFSNLHQLRHLDLQSNNFVGKIPASLGN 209
SIP L + LDLS N ++IGH + +NL L + N G SLG+
Sbjct: 19 SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75
Query: 210 NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS 269
L +LDLS N S S F L L YL+L N + SL N+T L L +
Sbjct: 76 ----LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI- 130
Query: 270 SNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSI 329
G++ +FS ++++ +F G T+L +L L+ SI
Sbjct: 131 -----GNV-ETFSEIRRI--------DFAG-----LTSLNELEIKALSLRNYQSQSLKSI 171
Query: 330 FELLNLT----------EIYLSFSNFSGSVELYDFAXXXXXXXXXXXXXXXXXXTKLT-- 377
++ +LT EI+ + +EL D KL
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231
Query: 378 ----ANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
+ SF L L +SE +E D + N +G PS +
Sbjct: 232 GSVLTDESFNELLKLLRYILELSE----------VEFDDCTLNGLGDFNPSESDVVSELG 281
Query: 434 LIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSS 493
+E R H+P YL D +++ L + V NS +P S
Sbjct: 282 KVETVTIRRL-----HIPQF---YLFYDLSTVYSLLEKVKRITV-----ENSKVFLVPCS 328
Query: 494 FC-NLSSIQYLDLSNNSLSGQIPQCLGNS-------TLETLDLRMNNFQ-----GSIPQT 540
F +L S+++LDLS N + + + L NS +L+TL L N+ + G I T
Sbjct: 329 FSQHLKSLEFLDLSENLM---VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385
Query: 541 NAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMR 600
LT L +S N P+P S K++FL++ + + + C+ TL+VLD+
Sbjct: 386 LK---NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ-TLEVLDVS 439
Query: 601 MNN---FSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQI 652
NN FS LP+ L L ++ N+LK SL L V+ + NQ+
Sbjct: 440 NNNLDSFSLFLPR-------LQELYISRNKLKTLPDASLF--PVLLVMKISRNQL 485
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 30/169 (17%)
Query: 144 DLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIP---------SSFSNLHQLRHLDL 194
D C+ N G PS + +++L ++ ++ HIP + +S L +++ + +
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVE-TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317
Query: 195 QSNNFVGKIPASLGNNITQLAYLDLSSNSF------SGHIPSSFSNLQQLCYLDLDDNHF 248
+ N+ V +P S ++ L +LDLS N + ++ +LQ L L NH
Sbjct: 318 E-NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV---LSQNHL 373
Query: 249 -----VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNL 292
GEI +L N L LD+S N F +P S +++ +LNL
Sbjct: 374 RSMQKTGEILLTLKN----LTSLDISRNTFHP-MPDSCQWPEKMRFLNL 417
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 381 SFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLS 440
+ NL++LD+S PD+ + ++ L+LS G R+ + TL LD+S
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST--GIRV---VKTCIPQTLEVLDVS 439
Query: 441 RNFLTSIDHLPWKNLEYLHLDSNSLQGSLPD--LPPHMVSFSISNNSLTGEIPSSFCNLS 498
N L S L L+ L++ N L+ +LPD L P ++ IS N L F L+
Sbjct: 440 NNNLDSFS-LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLT 497
Query: 499 SIQYLDLSNNSLSGQIPQ 516
S+Q + L N P+
Sbjct: 498 SLQKIWLHTNPWDCSCPR 515
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 12/165 (7%)
Query: 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGE 251
LDLQ NN + ++ + L L L +N S +FS L++L L + NH V E
Sbjct: 59 LDLQ-NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E 116
Query: 252 IPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV--GKIPDMFTNLT 309
IP +L +++ +L D N FS L+ + + + N G P F L
Sbjct: 117 IPPNLPSSLVELRIHD---NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172
Query: 310 QLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDF 354
+L++L ++ +L G IP + E LN E++L + ++EL D
Sbjct: 173 KLNYLRISEAKLTG-IPKDLPETLN--ELHLDHNKIQ-AIELEDL 213
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 179 IPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQL 238
IPS + ++ LDL SNN + I S L L L+SN + SFS+L L
Sbjct: 46 IPSGLT--EAVKSLDL-SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102
Query: 239 CYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSS-FSNLQQLLWLNLEYNNF 297
+LDL N ++ + +S ++ L +L+L N + +S FS+L +L L
Sbjct: 103 EHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILR------ 155
Query: 298 VGKIPDMFTNLTQLSFLGLAYNE 320
VG + D FT + + F GL + E
Sbjct: 156 VGNM-DTFTKIQRKDFAGLTFLE 177
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 207 LGNNITQLAYLD----LSSNSFSG----HIPSSF-SNLQQLCYLDLDDNHFVGEIPASLG 257
LG NIT+ +LD L F+ HIP++ ++++ L +L+L N + E+P+ L
Sbjct: 110 LGMNITR-QHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN--IEEMPSHLF 166
Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPD-MFTNLTQLSFLGL 316
+++ L ++ SN F + +L LNL N + +PD +F LT L + L
Sbjct: 167 DDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQ-LKSVPDGIFDRLTSLQKIWL 225
Query: 317 AYNELIGSIP 326
N S P
Sbjct: 226 HTNPWDCSCP 235
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
L +I+ SN+ ++ + GK+ LK LN++ N L LT L+ + L +N
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 12/157 (7%)
Query: 168 LDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGH 227
+D S N I H+P S + ++ S N++ ++ S ++++L L +S N
Sbjct: 5 VDRSKNGLI-HVPKDLSQKTTILNI---SQNYISELWTSDILSLSKLRILIISHNRIQYL 60
Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGH-IPSSFSNLQQ 286
S F Q+L YLDL N V +I N L +LDLS N F I F N+ Q
Sbjct: 61 DISVFKFNQELEYLDLSHNKLV-KISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQ 116
Query: 287 LLWLNLEYNNFVGK--IPDMFTNLTQ-LSFLGLAYNE 320
L +L L + +P N+++ L LG Y E
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE 153
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 760 FATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSN 816
+DL SN+ + IP+ V KL +L+ LN++ N L LT L+ + L +N
Sbjct: 423 IKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 8/153 (5%)
Query: 191 HLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFS--GHIPSSFSNLQQLCYLDLDDNHF 248
HLD +N + + G+ +T+L L L N I + ++ L LD+ N
Sbjct: 328 HLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386
Query: 249 VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNL 308
+ + L L++SSN + I ++L L ++N + IP L
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDL---HSNKIKSIPKQVVKL 443
Query: 309 TQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYL 340
L L +A N+L S+P IF+ L +L +I+L
Sbjct: 444 EALQELNVASNQL-KSVPDGIFDRLTSLQKIWL 475
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255
+NN + K+ + +++ L L +SN + F L QL LDL+DNH IP
Sbjct: 41 NNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRG 99
Query: 256 LGNNITQLAYLDLSSNGF 273
+N+ L ++ L +N +
Sbjct: 100 AFDNLKSLTHIYLYNNPW 117
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 249 VGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNL 308
+ +PA + + +L L++N + P F +L L L N +F L
Sbjct: 24 LASVPAGIPTDKQRLW---LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKL 80
Query: 309 TQLSFLGLAYNELIGSIPSSIFE-LLNLTEIYL 340
TQL+ L L N L SIP F+ L +LT IYL
Sbjct: 81 TQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYL 112
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 200 VGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNN 259
+ +PA + + +L L++N + P F +L L L + N IP + +
Sbjct: 24 LASVPAGIPTDKQRLW---LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDK 79
Query: 260 ITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN 296
+TQL LDL+ N +F NL+ L + L YNN
Sbjct: 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL-YNN 115
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 116 KLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSF 175
K L N+ +K+ G D +L L S T +IP + + +TQL LDL+ N
Sbjct: 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHL 93
Query: 176 IGHIPSSFSNLHQLRHLDLQSN 197
+F NL L H+ L +N
Sbjct: 94 KSIPRGAFDNLKSLTHIYLYNN 115
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 198 NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG 257
N + IP + +L +DLS+N S P +F L+ L L L N + E+P SL
Sbjct: 42 NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLF 100
Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLA 317
+ L L L++N + +F +L L L+L N F+ L + + LA
Sbjct: 101 EGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160
Query: 318 YNELI 322
N I
Sbjct: 161 QNPFI 165
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 149 NFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLG 208
N IPP + +L +DLS N P +F L L L L N + ++P SL
Sbjct: 42 NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLF 100
Query: 209 NNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHF 248
+ L L L++N + +F +L L L L DN
Sbjct: 101 EGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKL 140
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 198 NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG 257
N + IP + +L +DLS+N S P +F L+ L L L N + E+P SL
Sbjct: 42 NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLF 100
Query: 258 NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLA 317
+ L L L++N + +F +L L L+L N F+ L + + LA
Sbjct: 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160
Query: 318 YNELI 322
N I
Sbjct: 161 QNPFI 165
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 149 NFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLG 208
N IPP + +L +DLS N P +F L L L L N + ++P SL
Sbjct: 42 NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLF 100
Query: 209 NNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHF 248
+ L L L++N + +F +L L L L DN
Sbjct: 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 408 LELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQG 467
L+ L LS NQI P + D+ L EL ++RN L +++ +P L L LD+N L+
Sbjct: 65 LKELHLSHNQISDLSP--LKDLT--KLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRD 120
Query: 468 SLPDLPPHMVS---FSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511
+ D H+ + SI NN L + F LS ++ LDL N ++
Sbjct: 121 T--DSLIHLKNLEILSIRNNKLKSIVMLGF--LSKLEVLDLHGNEIT 163
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 783 SLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLA 819
+LK L++SHN ++ P L++LT+LE L ++ N+L
Sbjct: 64 NLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK 98
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 479 FSISNNSLT----GEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQ 534
S+ N SLT G +PS+ +L +++ L LS+N LG++ L L +
Sbjct: 86 LSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNP--------LGDAGLRLL------CE 131
Query: 535 GSI-PQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLG--- 590
G + PQ + + +L Y RL+ E PL L L+ L V NN++ LG
Sbjct: 132 GLLDPQCHLEKLQLEYCRLTAASCE-PLASVLRATRALKELTVSNNDIGEAGARVLGQGL 190
Query: 591 -NSTLQVLDMRMNNFSGSLPQTFAKSCVLVS 620
+S Q+ +R+ N G P C +V+
Sbjct: 191 ADSACQLETLRLENC-GLTPANCKDLCGIVA 220
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 131/309 (42%), Gaps = 78/309 (25%)
Query: 407 QLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLP---WKN---LEYLHL 460
Q+ELL+L++ QI I ++ + HT+ +L + N +I +LP ++N L L L
Sbjct: 70 QVELLNLNDLQIE-EIDTYAFAYA-HTIQKLYMGFN---AIRYLPPHVFQNVPLLTVLVL 124
Query: 461 DSNSLQGSLP----DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ 516
+ N L SLP P + + S+SNN+L +F +S+Q L LS+N L+
Sbjct: 125 ERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---- 179
Query: 517 CLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDV 576
+DL + IP L + +S N L P + ++ LD
Sbjct: 180 ---------VDLSL------IP-------SLFHANVSYNLLSTLAIP-----IAVEELDA 212
Query: 577 GNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSL 636
+N+++ + N L +L ++ NN + + LV ++L+ N L+ +
Sbjct: 213 SHNSIN--VVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268
Query: 637 VNCQYLEVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPIGDTKTRVPFPKLRIMD 696
V Q LE L + NN++ + +G P P L+++D
Sbjct: 269 VKMQRLERLYISNNRL-------------------VALNLYGQ--------PIPTLKVLD 301
Query: 697 CSHNQLTGV 705
SHN L V
Sbjct: 302 LSHNHLLHV 310
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 111/282 (39%), Gaps = 16/282 (5%)
Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255
N+ + K+PA+L ++ Q+ L+L+ +F+ + L + N + +P
Sbjct: 53 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPH 111
Query: 256 LGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLG 315
+ N+ L L L N S F N +L L++ NN D F T L L
Sbjct: 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171
Query: 316 LAYNEL----IGSIPSSI-----FELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXX 366
L+ N L + IPS + LL+ I ++ S +
Sbjct: 172 LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 231
Query: 367 XXXXXXXTKLTANSSFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSW 425
T ++P L +DLS + + + +LE L +S N++ +
Sbjct: 232 KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL---VALN 288
Query: 426 MWDIGVHTLIELDLSRNFLTSID--HLPWKNLEYLHLDSNSL 465
++ + TL LDLS N L ++ + LE L+LD NS+
Sbjct: 289 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 330
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 33/158 (20%)
Query: 687 VPFPKLRIMDCSHNQLTGVLPLWYLESFKAM------------------MHGNNNSV-EV 727
PF KL +++ S N L L L L + + + +H NN++ V
Sbjct: 55 APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114
Query: 728 GYMRLPGSSNYY--ESIFLTMKGIDLQMERILTTFATIDLSSNRFQR-KIPEVVGKLNSL 784
R G N Y + ++ +D E + +DL N E+ ++L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLD---EGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 785 KSLNISHN---NLTGCIPSSLRNLTELESLDLSSNKLA 819
+ LN+ +N ++ G + +L++LDLSSNKLA
Sbjct: 172 EHLNLQYNFIYDVKGQVV-----FAKLKTLDLSSNKLA 204
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 72/189 (38%), Gaps = 37/189 (19%)
Query: 526 LDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQI 585
L+L+ N P N K+T L LSGN L+ ++ ++ LD+ + ++
Sbjct: 74 LELKDNQITDLTPLKNL--TKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT 129
Query: 586 PECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVL 645
P G S LQVL + +N + P L G L N QYL +
Sbjct: 130 PLA-GLSNLQVLYLDLNQITNISP------------------LAG-----LTNLQYLSI- 164
Query: 646 DVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV 705
GNNQ++D P R++ I D P L + NQ++ V
Sbjct: 165 --GNNQVNDLTPLA----NLSKLTTLRADD--NKISDISPLASLPNLIEVHLKDNQISDV 216
Query: 706 LPLWYLESF 714
PL L +
Sbjct: 217 SPLANLSNL 225
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 131/309 (42%), Gaps = 78/309 (25%)
Query: 407 QLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLP---WKN---LEYLHL 460
Q+ELL+L++ QI I ++ + HT+ +L + N +I +LP ++N L L L
Sbjct: 76 QVELLNLNDLQIE-EIDTYAFAYA-HTIQKLYMGFN---AIRYLPPHVFQNVPLLTVLVL 130
Query: 461 DSNSLQGSLP----DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQ 516
+ N L SLP P + + S+SNN+L +F +S+Q L LS+N L+
Sbjct: 131 ERNDL-SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---- 185
Query: 517 CLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDV 576
+DL + IP L + +S N L P + ++ LD
Sbjct: 186 ---------VDLSL------IP-------SLFHANVSYNLLSTLAIP-----IAVEELDA 218
Query: 577 GNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSL 636
+N+++ + N L +L ++ NN + + LV ++L+ N L+ +
Sbjct: 219 SHNSIN--VVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 274
Query: 637 VNCQYLEVLDVGNNQIDDTFPYWXXXXXXXXXXXXRSNRFWGPIGDTKTRVPFPKLRIMD 696
V Q LE L + NN++ + +G P P L+++D
Sbjct: 275 VKMQRLERLYISNNRL-------------------VALNLYGQ--------PIPTLKVLD 307
Query: 697 CSHNQLTGV 705
SHN L V
Sbjct: 308 LSHNHLLHV 316
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 111/282 (39%), Gaps = 16/282 (5%)
Query: 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255
N+ + K+PA+L ++ Q+ L+L+ +F+ + L + N + +P
Sbjct: 59 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPH 117
Query: 256 LGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLG 315
+ N+ L L L N S F N +L L++ NN D F T L L
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177
Query: 316 LAYNEL----IGSIPSSI-----FELLNLTEIYLSFSNFSGSVELYDFAXXXXXXXXXXX 366
L+ N L + IPS + LL+ I ++ S +
Sbjct: 178 LSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL 237
Query: 367 XXXXXXXTKLTANSSFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSW 425
T ++P L +DLS + + + +LE L +S N++ +
Sbjct: 238 KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL---VALN 294
Query: 426 MWDIGVHTLIELDLSRNFLTSID--HLPWKNLEYLHLDSNSL 465
++ + TL LDLS N L ++ + LE L+LD NS+
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 33/158 (20%)
Query: 687 VPFPKLRIMDCSHNQLTGVLPLWYLESFKAM------------------MHGNNNSV-EV 727
PF KL +++ S N L L L L + + + +H NN++ V
Sbjct: 55 APFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114
Query: 728 GYMRLPGSSNYY--ESIFLTMKGIDLQMERILTTFATIDLSSNRFQR-KIPEVVGKLNSL 784
R G N Y + ++ +D E + +DL N E+ ++L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLD---EGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
Query: 785 KSLNISHN---NLTGCIPSSLRNLTELESLDLSSNKLA 819
+ LN+ +N ++ G + +L++LDLSSNKLA
Sbjct: 172 EHLNLQYNFIYDVKGQVV-----FAKLKTLDLSSNKLA 204
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 517 CLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPL 561
C LET+ +++N G IP T+ + + Y+ G+ LEG L
Sbjct: 296 CTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKL 340
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 517 CLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPL 561
C LET+ +++N G IP T+ + + Y+ G+ LEG L
Sbjct: 296 CTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKL 340
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 13/180 (7%)
Query: 114 LRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSIN 173
L K+ ++ ND I + P L + + N I P N+ L YL +S N
Sbjct: 56 LEKIEISQNDV-LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS-N 113
Query: 174 SFIGHIPSSFSNLHQLRH--LDLQSNNFVGKIPASLGNNITQLAY----LDLSSNSFSGH 227
+ I H+P +H L+ LD+Q N + I N+ L++ L L+ N
Sbjct: 114 TGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIER---NSFVGLSFESVILWLNKNGIQ-E 168
Query: 228 IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287
I +S N QL L+L DN+ + E+P + + + LD+S NL++L
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 228
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 110/288 (38%), Gaps = 64/288 (22%)
Query: 375 KLTANSSFPNLSALDLSACNISEFPDNL-RTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433
KL A S L++L+L+ I+E P N Q+E L + N++ IP+ V
Sbjct: 345 KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403
Query: 434 LIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSL------- 486
+D S N + S+D KN + LD +G ++ S ++SNN +
Sbjct: 404 XSAIDFSYNEIGSVDG---KNFD--PLDPTPFKGI------NVSSINLSNNQISKFPKEL 452
Query: 487 --TGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKG 544
TG P S NL ++ NSL + L ++DLR N
Sbjct: 453 FSTGS-PLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFN------------- 498
Query: 545 CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNF 604
KLT +LS + LP L +D+ N+ S + L +STL+ +R
Sbjct: 499 -KLT--KLSDDFRATTLP-------YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR- 547
Query: 605 SGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQI 652
+ GNR P + C L L +G+N I
Sbjct: 548 -----------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,726,122
Number of Sequences: 62578
Number of extensions: 1110426
Number of successful extensions: 3610
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 2053
Number of HSP's gapped (non-prelim): 750
length of query: 957
length of database: 14,973,337
effective HSP length: 108
effective length of query: 849
effective length of database: 8,214,913
effective search space: 6974461137
effective search space used: 6974461137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)