Query 002167
Match_columns 957
No_of_seqs 884 out of 5770
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 18:02:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.4E-72 1.2E-76 706.7 48.1 584 29-870 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.2E-56 7E-61 563.1 43.0 496 138-849 69-566 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 9.3E-39 2E-43 325.0 -11.0 228 162-427 44-272 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 1.3E-38 2.8E-43 324.0 -15.6 488 110-653 43-541 (565)
5 KOG0618 Serine/threonine phosp 100.0 5.7E-35 1.2E-39 327.0 -2.1 415 143-653 3-420 (1081)
6 KOG4194 Membrane glycoprotein 100.0 1.3E-33 2.9E-38 299.8 7.5 365 214-675 80-450 (873)
7 KOG0618 Serine/threonine phosp 100.0 1.6E-34 3.5E-39 323.4 -3.2 479 91-675 3-487 (1081)
8 KOG4194 Membrane glycoprotein 100.0 5.4E-33 1.2E-37 295.2 8.4 343 210-648 100-447 (873)
9 KOG0444 Cytoskeletal regulator 100.0 9.2E-33 2E-37 294.6 0.0 365 109-581 4-374 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.3E-31 2.9E-36 285.9 -2.1 365 135-603 4-373 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.6E-21 3.4E-26 246.9 29.3 341 210-603 556-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2.3E-21 4.9E-26 245.4 27.0 344 257-675 554-904 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 7.7E-21 1.7E-25 222.3 18.2 261 476-848 203-463 (788)
14 PRK15387 E3 ubiquitin-protein 99.8 2.6E-20 5.6E-25 217.9 19.2 94 546-654 283-376 (788)
15 KOG4237 Extracellular matrix p 99.8 2.5E-22 5.3E-27 205.7 -2.4 297 153-511 60-359 (498)
16 KOG4237 Extracellular matrix p 99.8 1.8E-22 4E-27 206.6 -3.3 89 565-653 270-359 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 3.3E-18 7.1E-23 202.0 21.4 247 138-419 178-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.1E-18 2.3E-23 206.1 12.3 263 387-680 182-448 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-18 2.7E-23 192.0 -0.9 84 758-841 221-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.2E-17 2.7E-22 184.0 3.1 202 117-322 3-234 (319)
21 KOG0617 Ras suppressor protein 99.7 2.6E-18 5.6E-23 156.2 -3.8 166 107-283 28-194 (264)
22 KOG0617 Ras suppressor protein 99.6 2.4E-17 5.1E-22 150.0 -4.6 163 136-331 31-194 (264)
23 PLN03150 hypothetical protein; 99.6 6.5E-15 1.4E-19 174.0 9.1 118 759-876 419-538 (623)
24 PLN03150 hypothetical protein; 99.5 2.3E-13 5.1E-18 160.9 15.2 152 26-223 367-526 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 1.4E-12 2.9E-17 140.8 -1.8 173 138-322 75-247 (722)
26 KOG0532 Leucine-rich repeat (L 99.1 2.6E-12 5.7E-17 138.6 -3.2 196 109-319 72-270 (722)
27 COG4886 Leucine-rich repeat (L 99.1 2.9E-10 6.2E-15 129.1 10.6 175 162-346 115-290 (394)
28 COG4886 Leucine-rich repeat (L 99.1 1.9E-10 4.2E-15 130.5 7.7 199 116-328 97-296 (394)
29 KOG3207 Beta-tubulin folding c 99.0 7.6E-11 1.7E-15 123.9 1.4 212 184-419 118-339 (505)
30 KOG3207 Beta-tubulin folding c 99.0 8.6E-11 1.9E-15 123.5 0.3 185 161-346 119-314 (505)
31 KOG1909 Ran GTPase-activating 98.9 1E-10 2.2E-15 119.9 -0.6 39 162-200 91-133 (382)
32 PF14580 LRR_9: Leucine-rich r 98.9 2E-09 4.3E-14 104.2 7.1 128 135-268 16-147 (175)
33 KOG4658 Apoptotic ATPase [Sign 98.9 2.3E-09 4.9E-14 129.6 8.9 44 382-425 746-789 (889)
34 KOG1259 Nischarin, modulator o 98.9 4E-10 8.6E-15 112.4 1.8 134 235-400 283-416 (490)
35 KOG1909 Ran GTPase-activating 98.9 5.5E-10 1.2E-14 114.5 2.0 141 182-322 87-254 (382)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.7E-09 3.7E-14 104.6 5.0 122 545-670 19-146 (175)
37 KOG4658 Apoptotic ATPase [Sign 98.9 2.8E-09 6E-14 128.9 7.9 204 210-420 521-731 (889)
38 KOG1259 Nischarin, modulator o 98.9 6.4E-10 1.4E-14 110.9 1.6 129 260-420 283-413 (490)
39 PF13855 LRR_8: Leucine rich r 98.7 6.5E-09 1.4E-13 82.5 2.9 60 783-842 2-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.7 9.7E-09 2.1E-13 81.5 2.9 61 758-818 1-61 (61)
41 PF08263 LRRNT_2: Leucine rich 98.7 1.8E-08 4E-13 72.9 4.0 40 30-82 2-43 (43)
42 KOG0531 Protein phosphatase 1, 98.6 4.6E-09 1E-13 119.3 -0.9 85 760-847 234-322 (414)
43 KOG0531 Protein phosphatase 1, 98.5 2.1E-08 4.5E-13 113.9 0.5 198 185-420 70-269 (414)
44 KOG2120 SCF ubiquitin ligase, 98.5 6.7E-09 1.5E-13 103.9 -4.4 108 188-295 186-296 (419)
45 KOG4341 F-box protein containi 98.5 7.2E-09 1.6E-13 108.7 -4.6 212 109-320 161-383 (483)
46 KOG2120 SCF ubiquitin ligase, 98.4 1.7E-08 3.8E-13 101.0 -4.1 179 139-319 186-373 (419)
47 KOG1859 Leucine-rich repeat pr 98.2 4.7E-08 1E-12 109.0 -5.1 176 107-297 104-291 (1096)
48 KOG1859 Leucine-rich repeat pr 98.2 8.5E-08 1.9E-12 107.0 -4.1 179 204-396 102-292 (1096)
49 KOG4341 F-box protein containi 98.2 8.4E-08 1.8E-12 100.9 -4.0 207 112-320 138-357 (483)
50 KOG2982 Uncharacterized conser 98.1 1.6E-06 3.4E-11 87.3 3.6 211 111-322 44-262 (418)
51 KOG2982 Uncharacterized conser 98.1 4.7E-07 1E-11 91.0 -0.3 86 186-271 70-156 (418)
52 KOG3665 ZYG-1-like serine/thre 98.1 2E-06 4.3E-11 101.8 3.5 150 138-291 122-281 (699)
53 KOG4579 Leucine-rich repeat (L 98.0 6.3E-07 1.4E-11 79.8 -1.9 114 139-257 28-143 (177)
54 COG5238 RNA1 Ran GTPase-activa 97.9 3.9E-06 8.5E-11 83.4 1.4 160 162-322 91-285 (388)
55 COG5238 RNA1 Ran GTPase-activa 97.9 1.1E-05 2.3E-10 80.4 4.2 89 136-225 28-133 (388)
56 KOG4579 Leucine-rich repeat (L 97.9 1.6E-06 3.6E-11 77.2 -1.7 107 163-274 27-136 (177)
57 PF12799 LRR_4: Leucine Rich r 97.7 2.7E-05 5.8E-10 56.4 3.0 36 783-819 2-37 (44)
58 PRK15386 type III secretion pr 97.7 0.00012 2.5E-09 80.0 9.2 53 592-650 52-104 (426)
59 KOG3665 ZYG-1-like serine/thre 97.7 2.2E-05 4.7E-10 93.2 3.0 135 163-300 122-265 (699)
60 PRK15386 type III secretion pr 97.6 0.00023 4.9E-09 77.8 9.5 36 471-508 69-104 (426)
61 PF12799 LRR_4: Leucine Rich r 97.6 4E-05 8.7E-10 55.5 2.5 37 806-843 1-37 (44)
62 KOG1644 U2-associated snRNP A' 97.4 0.00023 4.9E-09 68.4 5.1 59 261-321 42-100 (233)
63 KOG1644 U2-associated snRNP A' 97.4 0.00024 5.2E-09 68.3 5.0 103 263-369 21-124 (233)
64 KOG1947 Leucine rich repeat pr 96.9 0.00018 3.9E-09 84.2 -0.4 64 210-273 241-307 (482)
65 PF13306 LRR_5: Leucine rich r 96.9 0.0013 2.7E-08 61.3 5.1 59 134-195 8-66 (129)
66 PF13306 LRR_5: Leucine rich r 96.8 0.0023 5E-08 59.6 5.9 108 155-269 4-111 (129)
67 KOG1947 Leucine rich repeat pr 96.7 0.00026 5.6E-09 82.9 -1.3 175 135-320 185-373 (482)
68 KOG2739 Leucine-rich acidic nu 96.3 0.0039 8.4E-08 62.9 4.0 60 592-653 43-104 (260)
69 KOG2123 Uncharacterized conser 96.3 0.00027 5.9E-09 70.9 -4.2 86 137-227 18-103 (388)
70 KOG2739 Leucine-rich acidic nu 96.1 0.0044 9.5E-08 62.5 3.4 56 358-413 91-150 (260)
71 KOG2123 Uncharacterized conser 96.1 0.00056 1.2E-08 68.8 -3.0 85 186-276 18-103 (388)
72 PF00560 LRR_1: Leucine Rich R 95.5 0.0058 1.3E-07 36.8 0.9 19 808-827 2-20 (22)
73 PF00560 LRR_1: Leucine Rich R 95.2 0.0065 1.4E-07 36.5 0.3 19 760-779 2-20 (22)
74 KOG4308 LRR-containing protein 93.2 0.0016 3.6E-08 74.1 -9.6 86 114-199 89-184 (478)
75 KOG4308 LRR-containing protein 90.0 0.0064 1.4E-07 69.3 -9.2 84 140-224 89-184 (478)
76 PF13504 LRR_7: Leucine rich r 88.8 0.22 4.8E-06 27.7 1.0 13 139-151 2-14 (17)
77 KOG0473 Leucine-rich repeat pr 86.4 0.047 1E-06 54.0 -4.5 84 757-843 41-124 (326)
78 smart00370 LRR Leucine-rich re 86.1 0.72 1.6E-05 28.9 2.3 21 138-159 2-22 (26)
79 smart00369 LRR_TYP Leucine-ric 86.1 0.72 1.6E-05 28.9 2.3 21 138-159 2-22 (26)
80 KOG0473 Leucine-rich repeat pr 85.4 0.03 6.4E-07 55.3 -6.3 88 107-200 37-124 (326)
81 PF13516 LRR_6: Leucine Rich r 84.2 0.28 6.1E-06 30.1 -0.2 13 783-795 3-15 (24)
82 smart00369 LRR_TYP Leucine-ric 84.1 0.9 2E-05 28.4 2.1 14 806-819 2-15 (26)
83 smart00370 LRR Leucine-rich re 84.1 0.9 2E-05 28.4 2.1 14 806-819 2-15 (26)
84 KOG3864 Uncharacterized conser 83.0 0.16 3.6E-06 49.4 -2.4 81 545-625 101-185 (221)
85 PF13516 LRR_6: Leucine Rich r 78.3 0.72 1.6E-05 28.2 0.1 16 138-153 2-17 (24)
86 KOG3864 Uncharacterized conser 72.3 0.65 1.4E-05 45.4 -1.8 33 287-319 103-135 (221)
87 smart00365 LRR_SD22 Leucine-ri 66.6 4.6 0.0001 25.4 1.7 14 806-819 2-15 (26)
88 KOG4242 Predicted myosin-I-bin 65.1 16 0.00035 40.7 6.6 63 405-471 164-232 (553)
89 KOG4242 Predicted myosin-I-bin 64.0 15 0.00033 40.9 6.2 36 760-795 415-453 (553)
90 smart00368 LRR_RI Leucine rich 54.8 9.5 0.00021 24.4 1.7 13 807-819 3-15 (28)
91 PF15179 Myc_target_1: Myc tar 54.2 6.1 0.00013 37.6 1.1 26 899-924 16-41 (197)
92 smart00364 LRR_BAC Leucine-ric 44.4 15 0.00033 23.1 1.4 17 139-156 3-19 (26)
93 TIGR00864 PCC polycystin catio 39.7 17 0.00036 49.7 2.1 32 788-819 1-32 (2740)
94 KOG3763 mRNA export factor TAP 33.2 22 0.00048 40.6 1.4 83 135-218 215-307 (585)
95 KOG3763 mRNA export factor TAP 30.8 26 0.00057 40.0 1.6 35 382-416 217-254 (585)
96 TIGR00864 PCC polycystin catio 22.6 51 0.0011 45.5 2.2 32 764-795 1-32 (2740)
97 smart00367 LRR_CC Leucine-rich 22.5 59 0.0013 20.1 1.4 12 138-149 2-13 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.4e-72 Score=706.72 Aligned_cols=584 Identities=37% Similarity=0.614 Sum_probs=443.8
Q ss_pred CHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCccccCCCCCc
Q 002167 29 SHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSL 108 (957)
Q Consensus 29 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l 108 (957)
+++|++||++||+++.++.+ .+.+|...++||.|.||.|+. .++|+.|+|++++++|.+++ .+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~--------------~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~--~~ 89 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLK--------------YLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISS--AI 89 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcc--------------cCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCCh--HH
Confidence 67899999999999976543 678998888999999999986 47999999999999998876 78
Q ss_pred cCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCC
Q 002167 109 FFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQ 188 (957)
Q Consensus 109 ~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 188 (957)
..+++|++|+|++|.+.+. +|..++..+++|++|+|++|+++|.+|.. . +++|++|+|++|.+.+.+|..++++++
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~--~-l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRG--S-IPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred hCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCcc--c-cCCCCEEECcCCcccccCChHHhcCCC
Confidence 8899999999999988765 78777678899999999999888888753 3 788889999988888888888888888
Q ss_pred CCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEEC
Q 002167 189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDL 268 (957)
Q Consensus 189 L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~L 268 (957)
|++|++++|.+.+.+|..+. ++++|++|++++|.+++.+|..++++++|++|++++|++.+.+|..+.. +++|++|++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L 243 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDL 243 (968)
T ss_pred CCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEEC
Confidence 88888888888888888887 8888888888888888888888888888888888888888888888776 888888888
Q ss_pred cCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCccc
Q 002167 269 SSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGS 348 (957)
Q Consensus 269 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 348 (957)
++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~- 322 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG- 322 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC-
Confidence 8888888888888888888888888888877777777777888888888877777777766666666666666655542
Q ss_pred ccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhh
Q 002167 349 VELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWD 428 (957)
Q Consensus 349 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 428 (957)
.+|..+..+++|+.|++++|.+.+.+|..+..
T Consensus 323 ------------------------------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 323 ------------------------------------------------KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred ------------------------------------------------cCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 23334445555555555555555555544332
Q ss_pred hccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccC
Q 002167 429 IGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNN 508 (957)
Q Consensus 429 ~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n 508 (957)
. ++|+.|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 355 ~--------------------------------------------~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n 390 (968)
T PLN00113 355 H--------------------------------------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390 (968)
T ss_pred C--------------------------------------------CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence 2 23333333344444444444444444444444444
Q ss_pred cCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCcc
Q 002167 509 SLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPEC 588 (957)
Q Consensus 509 ~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 588 (957)
.+. +.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..
T Consensus 391 ~l~-----------------------~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~ 447 (968)
T PLN00113 391 SLE-----------------------GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSR 447 (968)
T ss_pred Eec-----------------------ccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChh
Confidence 444 444444555566777777777777777777777777777777777777777665
Q ss_pred ccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcccccccccccc
Q 002167 589 LGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQ 667 (957)
Q Consensus 589 ~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~ 667 (957)
+.. ++|+.|++++|++.+.+|..+. .++|+.|++++|++++.+ |..+..
T Consensus 448 ~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~------------------------~~~~~~----- 497 (968)
T PLN00113 448 KWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAV------------------------PRKLGS----- 497 (968)
T ss_pred hccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCcc------------------------Chhhhh-----
Confidence 544 7777777777777777766542 233444444443333332 222111
Q ss_pred EEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEe
Q 002167 668 VLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMK 747 (957)
Q Consensus 668 ~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (957)
T Consensus 498 -------------------------------------------------------------------------------- 497 (968)
T PLN00113 498 -------------------------------------------------------------------------------- 497 (968)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCc
Q 002167 748 GIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLA 827 (957)
Q Consensus 748 ~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~ 827 (957)
++.|+.|+|++|++++.+|+.++++++|++|+|++|.++|.+|..++.+++|++|||++|+++|.+|..+.
T Consensus 498 ---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 498 ---------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred ---------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHh
Confidence 23455566777777777888888899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEECccCcccccCCCCCCCCcccCCcccCCcCCCCCC
Q 002167 828 SLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFP 870 (957)
Q Consensus 828 ~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~ 870 (957)
.+++|++|++++|+++|.+|..++|.++...+|.||+++||.+
T Consensus 569 ~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 569 NVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.2e-56 Score=563.08 Aligned_cols=496 Identities=35% Similarity=0.583 Sum_probs=340.0
Q ss_pred CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhcc-CCCCCCEEEccCCcCCCCCchhhhhCCCCCcE
Q 002167 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFS-NLHQLRHLDLQSNNFVGKIPASLGNNITQLAY 216 (957)
Q Consensus 138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~ 216 (957)
.+++.|+|++|.+.|.+|..+.. +++|++|+|++|.+.+.+|..+. ++++|++|++++|++++.+|.. .+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~-l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhC-CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc---ccCCCCE
Confidence 46888888888888888877776 88888888888888877776554 7788888888888877777653 5677777
Q ss_pred EEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCc
Q 002167 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN 296 (957)
Q Consensus 217 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 296 (957)
|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 777777777777777777777777777777777667766665 7777777777777766666666666666666666666
Q ss_pred CcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccc
Q 002167 297 FVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKL 376 (957)
Q Consensus 297 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 376 (957)
+.+.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+.
T Consensus 224 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------------------------------ 273 (968)
T PLN00113 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS------------------------------ 273 (968)
T ss_pred cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee------------------------------
Confidence 66666666666666666666666655555544444444444444333322
Q ss_pred cCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccc
Q 002167 377 TANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLE 456 (957)
Q Consensus 377 ~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~ 456 (957)
+.+|..+..+++|++|++++|.+.
T Consensus 274 -------------------~~~p~~l~~l~~L~~L~Ls~n~l~------------------------------------- 297 (968)
T PLN00113 274 -------------------GPIPPSIFSLQKLISLDLSDNSLS------------------------------------- 297 (968)
T ss_pred -------------------ccCchhHhhccCcCEEECcCCeec-------------------------------------
Confidence 112222333333333333333333
Q ss_pred eeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCc
Q 002167 457 YLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGS 536 (957)
Q Consensus 457 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~ 536 (957)
+.+|..+.++++|+.|++++|.+++.+|
T Consensus 298 -------------------------------~~~p~~~~~l~~L~~L~l~~n~~~~~~~--------------------- 325 (968)
T PLN00113 298 -------------------------------GEIPELVIQLQNLEILHLFSNNFTGKIP--------------------- 325 (968)
T ss_pred -------------------------------cCCChhHcCCCCCcEEECCCCccCCcCC---------------------
Confidence 3333334444455555555554443333
Q ss_pred CCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccC
Q 002167 537 IPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKS 615 (957)
Q Consensus 537 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l 615 (957)
..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+.. ++|+.|++++|++.+.+|..+..+
T Consensus 326 --~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 326 --VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred --hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 23333455666666666666666666666666666666666666666665544 556666666666666666666666
Q ss_pred CCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEE
Q 002167 616 CVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIM 695 (957)
Q Consensus 616 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L 695 (957)
++|+.|++++|++++.+|..+.+++.|+.|++++|.+++.+|..+..+ ++|+.|
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------------------------~~L~~L 457 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM--------------------------PSLQML 457 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccC--------------------------CCCcEE
Confidence 666666666666666666666666666666666666666555544444 455555
Q ss_pred EcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCc
Q 002167 696 DCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIP 775 (957)
Q Consensus 696 dls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip 775 (957)
++++|++.|.+|... ...+|+.||+++|++++.+|
T Consensus 458 ~L~~n~~~~~~p~~~---------------------------------------------~~~~L~~L~ls~n~l~~~~~ 492 (968)
T PLN00113 458 SLARNKFFGGLPDSF---------------------------------------------GSKRLENLDLSRNQFSGAVP 492 (968)
T ss_pred ECcCceeeeecCccc---------------------------------------------ccccceEEECcCCccCCccC
Confidence 566666666555321 02568899999999999999
Q ss_pred ccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCC
Q 002167 776 EVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG 849 (957)
Q Consensus 776 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 849 (957)
..++++++|+.|+|++|++++.+|+.++++++|++|+|++|+++|.+|..+..+++|+.||+++|+++|.+|..
T Consensus 493 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred hhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=9.3e-39 Score=325.01 Aligned_cols=228 Identities=26% Similarity=0.388 Sum_probs=163.1
Q ss_pred CCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEE
Q 002167 162 ITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYL 241 (957)
Q Consensus 162 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 241 (957)
-..|+.+++++|.+... ...+.++..|.+|++.+|+++ .+|++++ .+..++.++.++|+++ .+|+.++.+.+|+.|
T Consensus 44 qv~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig-~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIG-ELEALKSLNVSHNKLS-ELPEQIGSLISLVKL 119 (565)
T ss_pred hcchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHH-HHHHHHHhhcccchHh-hccHHHhhhhhhhhh
Confidence 35677888888877643 345777888888888888877 7788887 7788888888888887 677888888888888
Q ss_pred eccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcC
Q 002167 242 DLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL 321 (957)
Q Consensus 242 ~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 321 (957)
++++|.+. ++|++++. +..|+.++..+|+++ ..|.++..+.+|..+++.+|++....|..+. ++.|++||...|.+
T Consensus 120 ~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 120 DCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLL 195 (565)
T ss_pred hcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhh
Confidence 88888887 78888877 788888888888887 6677788888888888888888755554444 88888888888876
Q ss_pred CCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChh
Q 002167 322 IGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDN 401 (957)
Q Consensus 322 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~ 401 (957)
+ .+|+.++.+.+|..|++..|.+. .+ +.+..+..|+++++..|.+..+|..
T Consensus 196 ~-tlP~~lg~l~~L~~LyL~~Nki~-~l---------------------------Pef~gcs~L~Elh~g~N~i~~lpae 246 (565)
T KOG0472|consen 196 E-TLPPELGGLESLELLYLRRNKIR-FL---------------------------PEFPGCSLLKELHVGENQIEMLPAE 246 (565)
T ss_pred h-cCChhhcchhhhHHHHhhhcccc-cC---------------------------CCCCccHHHHHHHhcccHHHhhHHH
Confidence 5 77888888888888888777765 11 1223344445555555555555555
Q ss_pred hh-cCCCCCEEECcCCcCCCCCChhhh
Q 002167 402 LR-TQHQLELLDLSENQIGGRIPSWMW 427 (957)
Q Consensus 402 l~-~~~~L~~L~Ls~n~l~~~~p~~~~ 427 (957)
.. +++++..||+.+|+++ +.|+.+.
T Consensus 247 ~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred Hhcccccceeeeccccccc-cCchHHH
Confidence 43 5566666666666654 4454443
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-38 Score=324.02 Aligned_cols=488 Identities=26% Similarity=0.367 Sum_probs=254.6
Q ss_pred CCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCC
Q 002167 110 FLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQL 189 (957)
Q Consensus 110 ~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 189 (957)
.-..++.|++++|++.. +.+.+ .++..|.+|++++|+++ ++|++++. +..++.++.++|.+. .+|..++.+.+|
T Consensus 43 ~qv~l~~lils~N~l~~--l~~dl-~nL~~l~vl~~~~n~l~-~lp~aig~-l~~l~~l~vs~n~ls-~lp~~i~s~~~l 116 (565)
T KOG0472|consen 43 EQVDLQKLILSHNDLEV--LREDL-KNLACLTVLNVHDNKLS-QLPAAIGE-LEALKSLNVSHNKLS-ELPEQIGSLISL 116 (565)
T ss_pred hhcchhhhhhccCchhh--ccHhh-hcccceeEEEeccchhh-hCCHHHHH-HHHHHHhhcccchHh-hccHHHhhhhhh
Confidence 34456777888877643 44555 67777788888888877 77777777 777777788777766 566677777777
Q ss_pred CEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECc
Q 002167 190 RHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS 269 (957)
Q Consensus 190 ~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls 269 (957)
++|++++|.+. .+|++++ .+..|..++..+|+++ ..|..+..+.+|..+++.+|++. ..|+.... ++.|++||.-
T Consensus 117 ~~l~~s~n~~~-el~~~i~-~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~ 191 (565)
T KOG0472|consen 117 VKLDCSSNELK-ELPDSIG-RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCN 191 (565)
T ss_pred hhhhcccccee-ecCchHH-HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccc
Confidence 77777777776 6677776 6777777777777776 55666777777777777777776 55555555 6777777776
Q ss_pred CCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchh-cccCCceEecCCCCCccc
Q 002167 270 SNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF-ELLNLTEIYLSFSNFSGS 348 (957)
Q Consensus 270 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~ 348 (957)
.|-+. .+|..++.+.+|+.|++..|++. .+| .|..+..|++++++.|++. .+|.... .+.++..||+..|++..
T Consensus 192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke- 266 (565)
T KOG0472|consen 192 SNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE- 266 (565)
T ss_pred hhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-
Confidence 66665 56666666666666666666665 344 4666666666666666654 3333322 34444444444443331
Q ss_pred ccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhh
Q 002167 349 VELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWD 428 (957)
Q Consensus 349 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 428 (957)
.......+.+|++||+++|.++.+|..++++ +|+.|.+.+|.+.. +-..+..
T Consensus 267 --------------------------~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~ 318 (565)
T KOG0472|consen 267 --------------------------VPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT-IRREIIS 318 (565)
T ss_pred --------------------------CchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHH-HHHHHHc
Confidence 1111123445555556666666666666666 66666666665531 1111100
Q ss_pred hc----cCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCC--CCCccEEEeccCCccCCCCccccCC--CCC
Q 002167 429 IG----VHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDL--PPHMVSFSISNNSLTGEIPSSFCNL--SSI 500 (957)
Q Consensus 429 ~~----~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~p~~l~~l--~~L 500 (957)
.+ ++.|+. .+..-.++......-. .-+ ...+..|+. ..+.+.|++++-+++....+.|..- .-.
T Consensus 319 ~gT~~vLKyLrs-~~~~dglS~se~~~e~---~~t----~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~V 390 (565)
T KOG0472|consen 319 KGTQEVLKYLRS-KIKDDGLSQSEGGTET---AMT----LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIV 390 (565)
T ss_pred ccHHHHHHHHHH-hhccCCCCCCcccccc---cCC----CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcce
Confidence 00 000110 0000000000000000 000 000001110 1234445555555442222222211 114
Q ss_pred CEEEcccCcCccCCCcccccc-ccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCC
Q 002167 501 QYLDLSNNSLSGQIPQCLGNS-TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNN 579 (957)
Q Consensus 501 ~~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 579 (957)
...+++.|++. ++|..+... .+.+.-+..|+..+.+|..+..+++|..|++++|.+. .+|..++.+..|+.|+++.|
T Consensus 391 t~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 391 TSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred EEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccc
Confidence 45555555555 344333221 2222222222222344555555555555555555443 44555555555555555555
Q ss_pred ccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccc
Q 002167 580 NLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653 (957)
Q Consensus 580 ~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 653 (957)
++. .+|.+... ..++.+-.++|++...-|+.+.++.+|.+|||.+|.+. .+|+.++++++|++|++.+|++.
T Consensus 469 rFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 469 RFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 554 44444433 33444444445554444444555555555555555554 34445555555555555555544
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-35 Score=326.97 Aligned_cols=415 Identities=28% Similarity=0.363 Sum_probs=216.8
Q ss_pred EECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCC
Q 002167 143 LDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSN 222 (957)
Q Consensus 143 L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n 222 (957)
+|.+.+.+. .||..+.. -..++.|+++.|.+....-+.+.+.-+|+.|++++|.+. ..|..+. .+.+|+.|+++.|
T Consensus 3 vd~s~~~l~-~ip~~i~~-~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it-~l~~L~~ln~s~n 78 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILN-NEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQIT-LLSHLRQLNLSRN 78 (1081)
T ss_pred cccccccCc-ccchhhcc-HHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhh-hHHHHhhcccchh
Confidence 455555555 66666654 344666666666554322233444555777777766665 5666665 5667777777777
Q ss_pred CCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCC
Q 002167 223 SFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIP 302 (957)
Q Consensus 223 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 302 (957)
.|. ..|....++.+|++|.|.+|.+. ..|.++.. +++|++|+++.|.+. .+|..+..++.++.+..++|.....
T Consensus 79 ~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~-lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~-- 152 (1081)
T KOG0618|consen 79 YIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISE-LKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR-- 152 (1081)
T ss_pred hHh-hCchhhhhhhcchhheeccchhh-cCchhHHh-hhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh--
Confidence 666 45566666777777777777666 66777665 777777777777766 5666677777777777777622212
Q ss_pred ccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCcc
Q 002167 303 DMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSF 382 (957)
Q Consensus 303 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l 382 (957)
++... ++.+++..|.+.+.++..+..++. .|+|.+|.+. . ..+..+.+|+.+....|.+
T Consensus 153 --lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~---~dls~~~~l~~l~c~rn~l------------ 211 (1081)
T KOG0618|consen 153 --LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V---LDLSNLANLEVLHCERNQL------------ 211 (1081)
T ss_pred --hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h---hhhhhccchhhhhhhhccc------------
Confidence 22222 667777777777666666665555 5666666654 1 1223333333333333321
Q ss_pred ccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccC
Q 002167 383 PNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDS 462 (957)
Q Consensus 383 ~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~ 462 (957)
.. ++++ .++++.|+.+.|.++.....+
T Consensus 212 -------------s~-------------l~~~----------------g~~l~~L~a~~n~l~~~~~~p----------- 238 (1081)
T KOG0618|consen 212 -------------SE-------------LEIS----------------GPSLTALYADHNPLTTLDVHP----------- 238 (1081)
T ss_pred -------------ce-------------EEec----------------CcchheeeeccCcceeecccc-----------
Confidence 11 1110 123333333333332211111
Q ss_pred ccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCC
Q 002167 463 NSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNA 542 (957)
Q Consensus 463 n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~ 542 (957)
.+.++++++++.|++++ +|++++.+.+|+.++..+|.++...-..+...+|+.|.+.+|.+. .+|....
T Consensus 239 ---------~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le 307 (1081)
T KOG0618|consen 239 ---------VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLE 307 (1081)
T ss_pred ---------ccccceeeecchhhhhc-chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCccc
Confidence 13566677777777663 457888888888888888888633223333336666666666655 3344444
Q ss_pred CCCCccEEEccCCcCCCCCCccccCCCC-CCeEEcCCCccccccCccccC--CcccEEECCCCcCCCCCccccccCCCcc
Q 002167 543 KGCKLTYLRLSGNHLEGPLPPSLTNCVK-LQFLDVGNNNLSGQIPECLGN--STLQVLDMRMNNFSGSLPQTFAKSCVLV 619 (957)
Q Consensus 543 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l~~~~p~~~~~--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 619 (957)
...+|++|+|..|++....+..+.-... |..|+.+.|.+. ..|..-.. +.|+.|++.+|.++...-..+.+..+|+
T Consensus 308 ~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLK 386 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLK 386 (1081)
T ss_pred ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhcccccee
Confidence 4555555555555554222222222221 444444444443 22211111 3344444444444443333344444444
Q ss_pred EEEccCCcCccCCCccccCCCCCcEEeCCCCccc
Q 002167 620 SLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653 (957)
Q Consensus 620 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 653 (957)
.|+|++|++.......+.++..|++|++|+|+++
T Consensus 387 VLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~ 420 (1081)
T KOG0618|consen 387 VLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT 420 (1081)
T ss_pred eeeecccccccCCHHHHhchHHhHHHhcccchhh
Confidence 4444444443222233344444444444444443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-33 Score=299.78 Aligned_cols=365 Identities=28% Similarity=0.310 Sum_probs=198.1
Q ss_pred CcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEec
Q 002167 214 LAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLE 293 (957)
Q Consensus 214 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 293 (957)
-+.|++++|.+....+..|.++++|+++++.+|.++ .||..... ..+|+.|+|.+|.|+..-.+.+..++.|+.|||+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 344555555555555555555555555555555555 55544333 4445555555555554444444445555555555
Q ss_pred cCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEccccccccc
Q 002167 294 YNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVS 373 (957)
Q Consensus 294 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 373 (957)
.|.++......|..-.++++|+|++|.++..-...|..+.+|..|
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl----------------------------------- 202 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL----------------------------------- 202 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee-----------------------------------
Confidence 554443333333333344444444444433222223333333333
Q ss_pred ccccCCCccccccccccccccCCCcChh-hhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCC
Q 002167 374 TKLTANSSFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW 452 (957)
Q Consensus 374 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 452 (957)
.|+.|.++.+|.. |..+++|+.|+|..|+|. +-+++.-.++++|+.|.+..|.+..+
T Consensus 203 ---------------kLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir--ive~ltFqgL~Sl~nlklqrN~I~kL----- 260 (873)
T KOG4194|consen 203 ---------------KLSRNRITTLPQRSFKRLPKLESLDLNRNRIR--IVEGLTFQGLPSLQNLKLQRNDISKL----- 260 (873)
T ss_pred ---------------ecccCcccccCHHHhhhcchhhhhhcccccee--eehhhhhcCchhhhhhhhhhcCcccc-----
Confidence 3333333445443 333566666666666553 22222222334444444444433333
Q ss_pred CccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccc-cccccceeecccc
Q 002167 453 KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL-GNSTLETLDLRMN 531 (957)
Q Consensus 453 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~~~L~~L~L~~n 531 (957)
-...|..+.++++|+|+.|++...-..++ +...|+.|++++|
T Consensus 261 -------------------------------------~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 261 -------------------------------------DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred -------------------------------------cCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 33345555555566666665554333332 3335666666666
Q ss_pred cccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCc-
Q 002167 532 NFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLP- 609 (957)
Q Consensus 532 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p- 609 (957)
.|...-++.+..+++|++|+|+.|+++...+..|..+..|++|+|++|.+...-...+.. ++|++|||++|.++..+.
T Consensus 304 aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 304 AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 666555666666667777777777777666666777777777777777766433333322 667777777777665443
Q ss_pred --cccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEccccc
Q 002167 610 --QTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNR 675 (957)
Q Consensus 610 --~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 675 (957)
..|.++++|+.|++.+|++....-.+|..+.+|+.|||.+|.|..+-|.+|..+ .|+.|.+..-.
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence 346667777777777777775444677777777777777777777777777776 67766655433
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=1.6e-34 Score=323.38 Aligned_cols=479 Identities=29% Similarity=0.384 Sum_probs=292.8
Q ss_pred EEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEc
Q 002167 91 LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170 (957)
Q Consensus 91 l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~L 170 (957)
+|.++..++ .||. .+..-..+..|+++.|.+-... .+.+ .+.-+|+.||+++|.+. ..|..+.. +.+|+.|++
T Consensus 3 vd~s~~~l~-~ip~--~i~~~~~~~~ln~~~N~~l~~p-l~~~-~~~v~L~~l~lsnn~~~-~fp~~it~-l~~L~~ln~ 75 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPE--QILNNEALQILNLRRNSLLSRP-LEFV-EKRVKLKSLDLSNNQIS-SFPIQITL-LSHLRQLNL 75 (1081)
T ss_pred cccccccCc-ccch--hhccHHHHHhhhccccccccCc-hHHh-hheeeeEEeeccccccc-cCCchhhh-HHHHhhccc
Confidence 455665554 3443 4444455777888888765432 1223 55555888888888876 77777776 778888888
Q ss_pred cCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCcc
Q 002167 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG 250 (957)
Q Consensus 171 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 250 (957)
+.|.+. ..|....++.+|++|.|.+|.+. .+|.++. .+.+|++|+++.|.+. .+|..+..++.++.+..++|....
T Consensus 76 s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~ 151 (1081)
T KOG0618|consen 76 SRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ 151 (1081)
T ss_pred chhhHh-hCchhhhhhhcchhheeccchhh-cCchhHH-hhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh
Confidence 887665 55677777888888888777766 6777776 7778888888887776 667777777777777777772221
Q ss_pred ccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchh
Q 002167 251 EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIF 330 (957)
Q Consensus 251 ~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 330 (957)
. ++ -..++.+++..|.+.+.++.++..+++ .|+|++|.+. ...+.++.+|+.+....|++... .-
T Consensus 152 ~----lg--~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~ 216 (1081)
T KOG0618|consen 152 R----LG--QTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EI 216 (1081)
T ss_pred h----hc--cccchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----Ee
Confidence 1 11 122666777777777777766666666 6777777665 12355666666666666655411 11
Q ss_pred cccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCE
Q 002167 331 ELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLEL 410 (957)
Q Consensus 331 ~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~ 410 (957)
..++|+.|+.+.|.+. .........+|++++++.+.+..+|+|+..+.+|+.
T Consensus 217 ~g~~l~~L~a~~n~l~----------------------------~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLT----------------------------TLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEA 268 (1081)
T ss_pred cCcchheeeeccCcce----------------------------eeccccccccceeeecchhhhhcchHHHHhcccceE
Confidence 2234444444444433 111122345788888888888899999999999999
Q ss_pred EECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCC
Q 002167 411 LDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEI 490 (957)
Q Consensus 411 L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~ 490 (957)
++..+|+++ .+|..+... .+|+.|.+..|.++.+
T Consensus 269 l~~n~N~l~-~lp~ri~~~--~~L~~l~~~~nel~yi------------------------------------------- 302 (1081)
T KOG0618|consen 269 LNANHNRLV-ALPLRISRI--TSLVSLSAAYNELEYI------------------------------------------- 302 (1081)
T ss_pred ecccchhHH-hhHHHHhhh--hhHHHHHhhhhhhhhC-------------------------------------------
Confidence 999999884 666665544 4444444444444433
Q ss_pred CccccCCCCCCEEEcccCcCccCCCccc-ccc--ccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccC
Q 002167 491 PSSFCNLSSIQYLDLSNNSLSGQIPQCL-GNS--TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTN 567 (957)
Q Consensus 491 p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 567 (957)
|.....++.|++|+|..|.+. ..|+.+ ... +|+.|+.+.|++.......-...+.|+.|++.+|+++...-..+.+
T Consensus 303 p~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 303 PPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN 381 (1081)
T ss_pred CCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence 333344455555555555554 233221 111 3455555555554333222233455666666666666665556666
Q ss_pred CCCCCeEEcCCCccccccCccc-cC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEE
Q 002167 568 CVKLQFLDVGNNNLSGQIPECL-GN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVL 645 (957)
Q Consensus 568 l~~L~~L~Ls~n~l~~~~p~~~-~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 645 (957)
.+.|+.|+|++|++. .+|... .. ..|++|+||+|+++ .+|.+...+..|++|...+|++. ..| .+.+++.|+.+
T Consensus 382 ~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~l 457 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVL 457 (1081)
T ss_pred ccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEE
Confidence 666666666666665 444433 22 56666666666666 55666666666777776666666 444 56666677777
Q ss_pred eCCCCccccC-ccccccccccccEEEccccc
Q 002167 646 DVGNNQIDDT-FPYWLDVLLELQVLILRSNR 675 (957)
Q Consensus 646 ~ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~ 675 (957)
|++.|+++.. +|+... -++|++||+++|.
T Consensus 458 DlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred ecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 7777666543 222222 2566666666665
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.98 E-value=5.4e-33 Score=295.20 Aligned_cols=343 Identities=25% Similarity=0.283 Sum_probs=176.5
Q ss_pred CCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcE
Q 002167 210 NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW 289 (957)
Q Consensus 210 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 289 (957)
++++|+++++.+|.++ .+|.......+|+.|+|.+|.++..-.+++.. ++.|+.|||+.|.|+..-...|..-.++++
T Consensus 100 nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~-l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSA-LPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred cCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHh-HhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 4455555555555444 34443333444555555555554222223322 555555555555555433334444455666
Q ss_pred EEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEccccc
Q 002167 290 LNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS 369 (957)
Q Consensus 290 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~ 369 (957)
|+|++|.|+..-...|..+.+|..|.|+.|.++...+..|.++++|+.|+|..|.+. .++...|.+++
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~----------- 245 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLP----------- 245 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCch-----------
Confidence 666666666555555666666666666666665433344444666666666555554 22222333343
Q ss_pred ccccccccCCCccccccccccccccCCCcChh-hhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCC
Q 002167 370 LSVSTKLTANSSFPNLSALDLSACNISEFPDN-LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSID 448 (957)
Q Consensus 370 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~ 448 (957)
+|+.|.+..|++..+.+. |..+.++++|+|+.|++...--.|++.+ .+|+.|++
T Consensus 246 --------------Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL--t~L~~L~l--------- 300 (873)
T KOG4194|consen 246 --------------SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL--TSLEQLDL--------- 300 (873)
T ss_pred --------------hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc--chhhhhcc---------
Confidence 444444444444444432 4556667777777777665444454433 33333333
Q ss_pred CCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeec
Q 002167 449 HLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDL 528 (957)
Q Consensus 449 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L 528 (957)
++|.+....++++..+++|++|+|++|+++..-+..+
T Consensus 301 ---------------------------------S~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf---------- 337 (873)
T KOG4194|consen 301 ---------------------------------SYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF---------- 337 (873)
T ss_pred ---------------------------------chhhhheeecchhhhcccceeEeccccccccCChhHH----------
Confidence 3333333334445555666666666666654444333
Q ss_pred ccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccc----cCCcccEEECCCCcC
Q 002167 529 RMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECL----GNSTLQVLDMRMNNF 604 (957)
Q Consensus 529 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~~~L~~L~Ls~n~l 604 (957)
..+..|++|+|++|.++..-...|..+++|++|||++|.++..+.+.- +.++|+.|++.+|++
T Consensus 338 -------------~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql 404 (873)
T KOG4194|consen 338 -------------RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL 404 (873)
T ss_pred -------------HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence 333444444444444443333445555555555555555554443321 125555566666655
Q ss_pred CCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCC
Q 002167 605 SGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVG 648 (957)
Q Consensus 605 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls 648 (957)
....-.+|.++++|++|||.+|.+-..-|.+|..+ .|++|.+.
T Consensus 405 k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 405 KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred eecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 54444566666666666666666666666666666 66666554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=9.2e-33 Score=294.64 Aligned_cols=365 Identities=30% Similarity=0.469 Sum_probs=240.2
Q ss_pred cCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCC
Q 002167 109 FFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQ 188 (957)
Q Consensus 109 ~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 188 (957)
+-++..|-.|+++|+|+|...|..+ ..++.++.|.|....+. .+|..++. +.+|++|.+++|++.. +-..++.++.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~-lqkLEHLs~~HN~L~~-vhGELs~Lp~ 79 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSR-LQKLEHLSMAHNQLIS-VHGELSDLPR 79 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHH-HhhhhhhhhhhhhhHh-hhhhhccchh
Confidence 4466778888888888888888888 88999999999999998 99999998 9999999999998873 3445788899
Q ss_pred CCEEEccCCcCC-CCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEE
Q 002167 189 LRHLDLQSNNFV-GKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLD 267 (957)
Q Consensus 189 L~~L~L~~n~l~-~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~ 267 (957)
|+.+.+++|++. .-+|..++ .+..|+.||||+|++. ..|..+..-+++-+|+||+|++. .||..++-+++.|-.||
T Consensus 80 LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLD 156 (1255)
T ss_pred hHHHhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhc
Confidence 999999998874 35788888 8888888999988887 66788888888888888888887 88888777777888888
Q ss_pred CcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCC-CCCCcchhcccCCceEecCCCCCc
Q 002167 268 LSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELI-GSIPSSIFELLNLTEIYLSFSNFS 346 (957)
Q Consensus 268 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~ 346 (957)
|++|++. .+|..+..+..|++|+|++|.+...--..+..+++|++|.+++.+-+ ..+|.++..+.+
T Consensus 157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N------------ 223 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN------------ 223 (1255)
T ss_pred cccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhh------------
Confidence 8888877 55666777777777777777654322222333444555555444322 123333333333
Q ss_pred ccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhh
Q 002167 347 GSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWM 426 (957)
Q Consensus 347 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~ 426 (957)
|..++++.|.+..+|+.+.++++|+.|+|++|+|+
T Consensus 224 --------------------------------------L~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it------- 258 (1255)
T KOG0444|consen 224 --------------------------------------LRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT------- 258 (1255)
T ss_pred --------------------------------------hhhccccccCCCcchHHHhhhhhhheeccCcCcee-------
Confidence 33333333333445555555555555555555554
Q ss_pred hhhccCcceEEECCCcccCCCCC--CCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEE
Q 002167 427 WDIGVHTLIELDLSRNFLTSIDH--LPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLD 504 (957)
Q Consensus 427 ~~~~~~~L~~L~Ls~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 504 (957)
.+.. ..|.+|+ +|+++.|+++ .+|.+++++++|+.|.
T Consensus 259 -------------------eL~~~~~~W~~lE---------------------tLNlSrNQLt-~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 259 -------------------ELNMTEGEWENLE---------------------TLNLSRNQLT-VLPDAVCKLTKLTKLY 297 (1255)
T ss_pred -------------------eeeccHHHHhhhh---------------------hhccccchhc-cchHHHhhhHHHHHHH
Confidence 2221 1233333 3334444443 6778888888888888
Q ss_pred cccCcCcc-CCCcccccc-ccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCcc
Q 002167 505 LSNNSLSG-QIPQCLGNS-TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNL 581 (957)
Q Consensus 505 L~~n~l~~-~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 581 (957)
+.+|+++- -+|..++.. .|+++...+|.+. ..|..++.|.+|+.|.|+.|++. .+|+.+.-++.|+.||+..|.-
T Consensus 298 ~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 298 ANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 88888752 345444443 5555555555543 44555555555555555555554 3455555555555555555543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.3e-31 Score=285.85 Aligned_cols=365 Identities=28% Similarity=0.464 Sum_probs=196.3
Q ss_pred cCCCCCcEEECCCCccC-ccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCC
Q 002167 135 DQFPSLTLLDLCSCNFT-GSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQ 213 (957)
Q Consensus 135 ~~l~~L~~L~Ls~n~l~-~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~ 213 (957)
+-++-.|-.|+++|.++ +.+|.++-+ +++++.|.|....+. .+|..++.|.+|++|.+.+|++. .+...+. .++.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs-~Lp~ 79 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELS-DLPR 79 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhc-cchh
Confidence 34566777888888888 567877777 888888888777765 56777777888888888777776 4444554 5667
Q ss_pred CcEEEccCCCCCC-CCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEe
Q 002167 214 LAYLDLSSNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNL 292 (957)
Q Consensus 214 L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 292 (957)
|+.+.+.+|++.. -+|..+.++..|..||||+|++. +.|..+.. -+++-+|+|++|+|..+....+.+++.|-.|||
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence 7777777766542 34555555666666666666665 55555544 455555555555555222222334444445555
Q ss_pred ccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccc
Q 002167 293 EYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSV 372 (957)
Q Consensus 293 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~ 372 (957)
++|++. .+|+.+..+..|++|+|++|.+. ......+..+++|++|.+++.+-+
T Consensus 158 S~NrLe-------------------------~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRT- 210 (1255)
T KOG0444|consen 158 SNNRLE-------------------------MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRT- 210 (1255)
T ss_pred ccchhh-------------------------hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccch-
Confidence 554444 34444445555555555554432 111112223333444444443311
Q ss_pred cccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCC
Q 002167 373 STKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW 452 (957)
Q Consensus 373 ~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 452 (957)
+..+|..+..+.+|..+|++.|.+. .+|+.+...
T Consensus 211 ----------------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l----------------------- 244 (1255)
T KOG0444|consen 211 ----------------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKL----------------------- 244 (1255)
T ss_pred ----------------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhh-----------------------
Confidence 2467777777777777777777764 444444332
Q ss_pred CccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCcccccc-ccceeecccc
Q 002167 453 KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNS-TLETLDLRMN 531 (957)
Q Consensus 453 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n 531 (957)
++|+.|++++|.++. +........+|++|+++.|+++ .+|.++... .|+.|.+.+|
T Consensus 245 ---------------------~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 245 ---------------------RNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred ---------------------hhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccC
Confidence 333333444443331 1122233445555555555555 444443322 4555555555
Q ss_pred ccc-CcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCc
Q 002167 532 NFQ-GSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNN 603 (957)
Q Consensus 532 ~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~ 603 (957)
+++ .-+|..++++..|+.+..++|.+. ..|+.++.|..|+.|.|+.|++. .+|+.+.. +.|+.||+..|.
T Consensus 302 kL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 302 KLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred cccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 444 234444555555555555544443 44555555555555555555544 44444433 444444444443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.6e-21 Score=246.87 Aligned_cols=341 Identities=24% Similarity=0.301 Sum_probs=193.5
Q ss_pred CCCCCcEEEccCCC------CCCCCCcccCCCC-cccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCccccc
Q 002167 210 NITQLAYLDLSSNS------FSGHIPSSFSNLQ-QLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFS 282 (957)
Q Consensus 210 ~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~ 282 (957)
++++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+. ..+|++|++.+|.+. .++..+.
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~-~L~~~~~ 631 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE-KLWDGVH 631 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-ccccccc
Confidence 45555555554332 1122344444432 4555555555554 5554442 455666666655554 3444555
Q ss_pred CcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcE
Q 002167 283 NLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKV 362 (957)
Q Consensus 283 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 362 (957)
.+++|+.|+++++.....+|. ++.+++|++|++++|.....+|..+..+++|+.|++++|.....++... ++++|+.
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~ 708 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYR 708 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCE
Confidence 556666666655544334443 5555666666666655445556666666666666666554333333211 4555555
Q ss_pred EEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCc
Q 002167 363 LSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRN 442 (957)
Q Consensus 363 L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n 442 (957)
|++++|.. ....+. ..++|+.|+++++.+..+|..+ .+++|++|.+.++..
T Consensus 709 L~Lsgc~~--L~~~p~--~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~------------------------ 759 (1153)
T PLN03210 709 LNLSGCSR--LKSFPD--ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKS------------------------ 759 (1153)
T ss_pred EeCCCCCC--cccccc--ccCCcCeeecCCCccccccccc-cccccccccccccch------------------------
Confidence 55555531 111110 1234455555555555554433 234444444433221
Q ss_pred ccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccc
Q 002167 443 FLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNST 522 (957)
Q Consensus 443 ~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~ 522 (957)
..+... + ..+.......+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|......+
T Consensus 760 --~~l~~~----~-------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~s 826 (1153)
T PLN03210 760 --EKLWER----V-------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLES 826 (1153)
T ss_pred --hhcccc----c-------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccc
Confidence 100000 0 000000111246778888888877778888888899999999998876667787766668
Q ss_pred cceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCC
Q 002167 523 LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRM 601 (957)
Q Consensus 523 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~ 601 (957)
|+.|++++|.....+|.. ..+|++|++++|.++ .+|..+..+++|++|++++|+-...+|..... ++|+.+++++
T Consensus 827 L~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred cCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence 888888888766555543 357888888888887 56778888888888888886555566665544 7788888887
Q ss_pred Cc
Q 002167 602 NN 603 (957)
Q Consensus 602 n~ 603 (957)
|.
T Consensus 903 C~ 904 (1153)
T PLN03210 903 CG 904 (1153)
T ss_pred Cc
Confidence 75
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.3e-21 Score=245.41 Aligned_cols=344 Identities=22% Similarity=0.269 Sum_probs=189.1
Q ss_pred hhhccCCcEEECcCCc------CCccCcccccCcC-CCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcch
Q 002167 257 GNNITQLAYLDLSSNG------FSGHIPSSFSNLQ-QLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSI 329 (957)
Q Consensus 257 ~~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 329 (957)
+.++++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|++|++.+|.+. .++..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~ 630 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV 630 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence 3346677777665442 2224555555553 5777777777665 456655 4577888888887765 456666
Q ss_pred hcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCC
Q 002167 330 FELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLE 409 (957)
Q Consensus 330 ~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~ 409 (957)
..+++|+.|+++++.....++ .+..+++|+.|++++|. .+..+|..+..+++|+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~------------------------~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCS------------------------SLVELPSSIQYLNKLE 684 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCC------------------------CccccchhhhccCCCC
Confidence 677777777777654332222 13334444444444432 2356777777778888
Q ss_pred EEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCC
Q 002167 410 LLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGE 489 (957)
Q Consensus 410 ~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~ 489 (957)
.|++++|...+.+|..+ .++ +|+.|++++|.....+|..+.+|+.|++++|.+. .
T Consensus 685 ~L~L~~c~~L~~Lp~~i---~l~---------------------sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~ 739 (1153)
T PLN03210 685 DLDMSRCENLEILPTGI---NLK---------------------SLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-E 739 (1153)
T ss_pred EEeCCCCCCcCccCCcC---CCC---------------------CCCEEeCCCCCCccccccccCCcCeeecCCCccc-c
Confidence 88887776544555432 123 4444444444444444555567777777777765 4
Q ss_pred CCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCC
Q 002167 490 IPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCV 569 (957)
Q Consensus 490 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 569 (957)
+|..+ .+++|++|++.++.... ++... ....+......++|+.|++++|...+.+|..+++++
T Consensus 740 lP~~~-~l~~L~~L~l~~~~~~~-l~~~~---------------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~ 802 (1153)
T PLN03210 740 FPSNL-RLENLDELILCEMKSEK-LWERV---------------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH 802 (1153)
T ss_pred ccccc-cccccccccccccchhh-ccccc---------------cccchhhhhccccchheeCCCCCCccccChhhhCCC
Confidence 55444 46777777777654321 11000 000011111224555555555555555555555566
Q ss_pred CCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCC
Q 002167 570 KLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGN 649 (957)
Q Consensus 570 ~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~ 649 (957)
+|+.|++++|...+.+|.....++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|++++
T Consensus 803 ~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 803 KLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 666666655544445555544455666666655444334332 245556666666555 3555566666666666665
Q ss_pred CccccCccccccccccccEEEccccc
Q 002167 650 NQIDDTFPYWLDVLLELQVLILRSNR 675 (957)
Q Consensus 650 n~l~~~~p~~l~~l~~L~~L~L~~n~ 675 (957)
|.-...+|..+..+++|+.+++++|.
T Consensus 879 C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 879 CNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCcCccCcccccccCCCeeecCCCc
Confidence 44333455555556666666666554
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=7.7e-21 Score=222.33 Aligned_cols=261 Identities=28% Similarity=0.335 Sum_probs=138.2
Q ss_pred ccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCC
Q 002167 476 MVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN 555 (957)
Q Consensus 476 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 555 (957)
-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|.. .++|++|++++|+++.
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l--p~~Lk~LdLs~N~Lts-------------------- 256 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL--PPELRTLEVSGNQLTS-------------------- 256 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC--CCCCcEEEecCCccCc--------------------
Confidence 345666666665 3454443 35666666666665 23431 1244444444444442
Q ss_pred cCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCcc
Q 002167 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPS 635 (957)
Q Consensus 556 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 635 (957)
+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++++ +|..
T Consensus 257 -----LP~l---p~sL~~L~Ls~N~L~-~Lp~l--p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l 320 (788)
T PRK15387 257 -----LPVL---PPGLLELSIFSNPLT-HLPAL--PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL 320 (788)
T ss_pred -----ccCc---ccccceeeccCCchh-hhhhc--hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC
Confidence 2221 234445555555444 23321 1345555555555542 232 12445555555555553 2221
Q ss_pred ccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhh
Q 002167 636 LVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFK 715 (957)
Q Consensus 636 l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~ 715 (957)
...|+.|++++|++++ +|.. ..+|+.|+|++|++.+ +|.. .++|+.|++++|++++ +|..
T Consensus 321 ---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l-----p~~L~~L~Ls~N~L~~-LP~l------ 380 (788)
T PRK15387 321 ---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL-----PSELYKLWAYNNRLTS-LPAL------ 380 (788)
T ss_pred ---cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC-----Ccccceehhhcccccc-Cccc------
Confidence 1234455555555543 2221 1345556666655543 2211 2355666666666653 3311
Q ss_pred ccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCC
Q 002167 716 AMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLT 795 (957)
Q Consensus 716 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 795 (957)
+..|+.|++++|+|++ +|... ++|+.|++++|+++
T Consensus 381 -----------------------------------------~~~L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~Ls 415 (788)
T PRK15387 381 -----------------------------------------PSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLT 415 (788)
T ss_pred -----------------------------------------ccccceEEecCCcccC-CCCcc---cCCCEEEccCCcCC
Confidence 1346677777777764 44432 46777777777777
Q ss_pred CCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCC
Q 002167 796 GCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG 848 (957)
Q Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 848 (957)
+ +|... .+|+.|++++|+++ .+|..+.++++|+.|++++|+|+|.+|.
T Consensus 416 s-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 416 S-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred C-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 4 56432 35667777777776 5777777777777777777777777664
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=2.6e-20 Score=217.94 Aligned_cols=94 Identities=32% Similarity=0.335 Sum_probs=50.5
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccC
Q 002167 546 KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNG 625 (957)
Q Consensus 546 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 625 (957)
+|+.|++++|+++. +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.+++ +|.. ..+|+.|+|++
T Consensus 283 ~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~ 351 (788)
T PRK15387 283 GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSD 351 (788)
T ss_pred hcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC--cccccccccccCcccc-cccc---ccccceEecCC
Confidence 45555555555552 2321 2456666666666653 3331 2346666666666653 3421 13567777777
Q ss_pred CcCccCCCccccCCCCCcEEeCCCCcccc
Q 002167 626 NRLKGPLPPSLVNCQYLEVLDVGNNQIDD 654 (957)
Q Consensus 626 n~l~~~~p~~l~~l~~L~~L~ls~n~l~~ 654 (957)
|++++ +|.. ..+|+.|++++|+++.
T Consensus 352 N~Ls~-LP~l---p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 352 NQLAS-LPTL---PSELYKLWAYNNRLTS 376 (788)
T ss_pred CccCC-CCCC---Ccccceehhhcccccc
Confidence 77763 4432 2355666666666653
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=2.5e-22 Score=205.65 Aligned_cols=297 Identities=25% Similarity=0.283 Sum_probs=170.1
Q ss_pred cCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccC-CCCCCCCCcc
Q 002167 153 SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSS-NSFSGHIPSS 231 (957)
Q Consensus 153 ~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~-n~l~~~~p~~ 231 (957)
++|..+. +.-..++|..|.|+...|.+|+.+++||.|||++|+|+..-|..+. .+++|..|-+.+ |+|+......
T Consensus 60 eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~-GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 60 EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK-GLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhh-hhHhhhHHHhhcCCchhhhhhhH
Confidence 5565543 2456677888888777777777777777777777777744444443 666666655544 6666555556
Q ss_pred cCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcC
Q 002167 232 FSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQL 311 (957)
Q Consensus 232 l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 311 (957)
|++|..|+.|.+.-|++. .++...+..+++|..|.+..|.+...-...|..+..++.+.+..|.+.. ..+++.+
T Consensus 136 F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wl 209 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWL 209 (498)
T ss_pred hhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccccchh
Confidence 666666666666666665 4554444446666666666666653323355566666666655554321 1111111
Q ss_pred ceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccc
Q 002167 312 SFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLS 391 (957)
Q Consensus 312 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~ 391 (957)
... +. ..|..++...-..-..+.+.++.. ++...|. .....+.+=..+
T Consensus 210 a~~-~a------~~~ietsgarc~~p~rl~~~Ri~q-~~a~kf~------------------------c~~esl~s~~~~ 257 (498)
T KOG4237|consen 210 ADD-LA------MNPIETSGARCVSPYRLYYKRINQ-EDARKFL------------------------CSLESLPSRLSS 257 (498)
T ss_pred hhH-Hh------hchhhcccceecchHHHHHHHhcc-cchhhhh------------------------hhHHhHHHhhcc
Confidence 111 00 011111111111111111111110 0000000 000011111111
Q ss_pred cc-cCCCcCh-hhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCC
Q 002167 392 AC-NISEFPD-NLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSL 469 (957)
Q Consensus 392 ~~-~l~~lp~-~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~ 469 (957)
.| .....|. .+..+++|+.|++++|++++.-+.+|... ..+++|.|..|++..+....|..|
T Consensus 258 ~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~--a~l~eL~L~~N~l~~v~~~~f~~l-------------- 321 (498)
T KOG4237|consen 258 EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA--AELQELYLTRNKLEFVSSGMFQGL-------------- 321 (498)
T ss_pred ccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch--hhhhhhhcCcchHHHHHHHhhhcc--------------
Confidence 22 1123332 37788888999999998888777777654 888888888888888777666655
Q ss_pred CCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCc
Q 002167 470 PDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLS 511 (957)
Q Consensus 470 ~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 511 (957)
..|+.|++++|+++...|.+|..+..|.+|++-.|.+.
T Consensus 322 ----s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 322 ----SGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred ----ccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 56777888888888888888988899999998887653
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=1.8e-22 Score=206.56 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=60.8
Q ss_pred ccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCc
Q 002167 565 LTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLE 643 (957)
Q Consensus 565 l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 643 (957)
|..+++|++|++++|++++.-+.++.. ..+++|.|..|++...-...|.++..|+.|+|++|+|+...|.+|..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 556666666666666666555555543 6666666666666655556677777777777777777777777777777777
Q ss_pred EEeCCCCccc
Q 002167 644 VLDVGNNQID 653 (957)
Q Consensus 644 ~L~ls~n~l~ 653 (957)
+|++-.|.+.
T Consensus 350 ~l~l~~Np~~ 359 (498)
T KOG4237|consen 350 TLNLLSNPFN 359 (498)
T ss_pred eeehccCccc
Confidence 7777776653
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=3.3e-18 Score=202.05 Aligned_cols=247 Identities=23% Similarity=0.330 Sum_probs=149.6
Q ss_pred CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL 217 (957)
Q Consensus 138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L 217 (957)
.+.+.|+++++.++ .+|..+. ++|+.|+|++|.++ .+|..+. .+|++|++++|+++ .+|..+. .+|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEE
Confidence 35667777777777 6776553 36777777777776 3454443 47777777777776 5666554 467777
Q ss_pred EccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcC
Q 002167 218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNF 297 (957)
Q Consensus 218 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 297 (957)
+|++|.+. .+|..+. ++|++|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.+
T Consensus 247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSL 316 (754)
T ss_pred ECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcc
Confidence 77777776 4555543 46777777777776 5666543 467778888777773 454432 3677777888777
Q ss_pred cccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEccccccccccccc
Q 002167 298 VGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLT 377 (957)
Q Consensus 298 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 377 (957)
+. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|++.. ++.. + .++|+.|++++|.+.....
T Consensus 317 t~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~-l--p~~L~~LdLs~N~Lt~LP~-- 384 (754)
T PRK15370 317 TA-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPET-L--PPTITTLDVSRNALTNLPE-- 384 (754)
T ss_pred cc-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChh-h--cCCcCEEECCCCcCCCCCH--
Confidence 64 44433 2577788888887764 555443 578888888877652 2211 1 2455666666555321110
Q ss_pred CCCccccccccccccccCCCcChhhhc----CCCCCEEECcCCcCC
Q 002167 378 ANSSFPNLSALDLSACNISEFPDNLRT----QHQLELLDLSENQIG 419 (957)
Q Consensus 378 ~~~~l~~L~~L~L~~~~l~~lp~~l~~----~~~L~~L~Ls~n~l~ 419 (957)
. -...|+.|++++|++..+|..+.. .+.+..+++.+|.+.
T Consensus 385 ~--l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 385 N--LPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred h--HHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 0 112455566666665555543322 244455555555543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.1e-18 Score=206.12 Aligned_cols=263 Identities=26% Similarity=0.400 Sum_probs=161.6
Q ss_pred ccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCC
Q 002167 387 ALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQ 466 (957)
Q Consensus 387 ~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~ 466 (957)
.|+++++.++.+|..+. +.++.|++++|.++ .+|..+. .+|+.|++++|.++.++.....+|+.|++++|.+.
T Consensus 182 ~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 182 ELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLTSIPATLPDTIQEMELSINRIT 254 (754)
T ss_pred EEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccccCChhhhccccEEECcCCccC
Confidence 34444444444444332 34555555555554 3343321 34555555555555554433345566666666555
Q ss_pred CCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCC
Q 002167 467 GSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCK 546 (957)
Q Consensus 467 ~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 546 (957)
.....++.+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. .+|+.|++++|+++. +|..+. ++
T Consensus 255 ~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp-~sL~~L~Ls~N~Lt~-LP~~l~--~s 326 (754)
T PRK15370 255 ELPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP-SGITHLNVQSNSLTA-LPETLP--PG 326 (754)
T ss_pred cCChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch-hhHHHHHhcCCcccc-CCcccc--cc
Confidence 322223456777777777776 3555443 478888888888773 454332 367888888888874 343332 57
Q ss_pred ccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCC
Q 002167 547 LTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGN 626 (957)
Q Consensus 547 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 626 (957)
|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ..|+.|++++|
T Consensus 327 L~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N 398 (754)
T PRK15370 327 LKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-PTITTLDVSRNALT-NLPENLP--AALQIMQASRN 398 (754)
T ss_pred ceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccC
Confidence 8888888888875 565553 68888888888887 5665442 67888888888888 4555543 36888888888
Q ss_pred cCccCCCccc----cCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccC
Q 002167 627 RLKGPLPPSL----VNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPI 680 (957)
Q Consensus 627 ~l~~~~p~~l----~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 680 (957)
+++ .+|..+ ..++.+..|++.+|+++. ..+.+|+.| ++.+.+.|++
T Consensus 399 ~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~ 448 (754)
T PRK15370 399 NLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPR 448 (754)
T ss_pred Ccc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCc
Confidence 887 455543 345778888888888763 344555555 4455555544
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=1.3e-18 Score=191.96 Aligned_cols=84 Identities=23% Similarity=0.302 Sum_probs=38.6
Q ss_pred ccceEEEcccCccCccCcccccc-----cCCCcEEECCCCcCC----CCCchhhhhccCCCEEECCCCccccc----Ccc
Q 002167 758 TTFATIDLSSNRFQRKIPEVVGK-----LNSLKSLNISHNNLT----GCIPSSLRNLTELESLDLSSNKLAGR----IPT 824 (957)
Q Consensus 758 ~~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~L~Ls~N~l~----~~ip~~l~~L~~L~~L~Ls~N~l~g~----ip~ 824 (957)
++|+.|++++|.+++.....+.. .+.|+.|++++|.++ ..+...+..+++|+++|+++|+++.. +..
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 44555555555554422222211 245555555555554 12233344445555555555555533 222
Q ss_pred cCcCC-CCCCeEECccCc
Q 002167 825 QLASL-NYLSVLNLSNNQ 841 (957)
Q Consensus 825 ~l~~l-~~L~~L~ls~N~ 841 (957)
.+... ..|+++|+.+|+
T Consensus 301 ~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 301 SLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHhhcCCchhhcccCCCC
Confidence 33333 445555555554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=1.2e-17 Score=184.01 Aligned_cols=202 Identities=21% Similarity=0.258 Sum_probs=92.8
Q ss_pred eeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCcc----CchhhhhcCCCCCEEEccCCcCCC------CcchhccCC
Q 002167 117 LNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGS----IPPSLGNNITQLAYLDLSINSFIG------HIPSSFSNL 186 (957)
Q Consensus 117 L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~----ip~~l~~~l~~L~~L~Ls~n~l~~------~~p~~l~~l 186 (957)
|+|.++.+++......+ ..++.|++|+++++.+++. ++..+.. .+.|++|+++++.+.+ .++..+..+
T Consensus 3 l~L~~~~l~~~~~~~~~-~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~-~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATELL-PKLLCLQVLRLEGNTLGEEAAKALASALRP-QPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred cccccCcccccchHHHH-HHHhhccEEeecCCCCcHHHHHHHHHHHhh-CCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 34444444433333222 4455555555555555321 2333332 4455555555554431 123344455
Q ss_pred CCCCEEEccCCcCCCCCchhhhhCCCC---CcEEEccCCCCCC----CCCcccCCC-CcccEEeccCCCCccccch----
Q 002167 187 HQLRHLDLQSNNFVGKIPASLGNNITQ---LAYLDLSSNSFSG----HIPSSFSNL-QQLCYLDLDDNHFVGEIPA---- 254 (957)
Q Consensus 187 ~~L~~L~L~~n~l~~~~p~~l~~~l~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~Ls~n~l~~~ip~---- 254 (957)
++|++|++++|.+.+..+..+. .+.+ |++|++++|.+++ .+...+..+ ++|+.|++++|.+++....
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~-~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHHH-HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 5555555555555433333332 2222 5555555555542 112223344 5556666666655532221
Q ss_pred hHhhhccCCcEEECcCCcCCcc----CcccccCcCCCcEEEeccCcCccc----CCccccccCcCceeeccCCcCC
Q 002167 255 SLGNNITQLAYLDLSSNGFSGH----IPSSFSNLQQLLWLNLEYNNFVGK----IPDMFTNLTQLSFLGLAYNELI 322 (957)
Q Consensus 255 ~l~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 322 (957)
.+.. +++|++|++++|.+++. ++..+..+++|++|++++|.+.+. +...+..+++|++|++++|.++
T Consensus 160 ~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 160 ALRA-NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHh-CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 1221 44566666666555531 222233444566666665555422 2223344555555555555554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=2.6e-18 Score=156.20 Aligned_cols=166 Identities=26% Similarity=0.519 Sum_probs=129.9
Q ss_pred CccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCC
Q 002167 107 SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL 186 (957)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 186 (957)
.++.+.+.+.|.||+|.++. +|+.+ ..+.+|++|++++|++. ++|.++.. +++|+.|+++-|++. .+|..|+.+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~--vppni-a~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~ 101 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV--VPPNI-AELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSF 101 (264)
T ss_pred cccchhhhhhhhcccCceee--cCCcH-HHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCC
Confidence 56677788888888888864 67777 78888888888888887 88888887 888888888888776 678888888
Q ss_pred CCCCEEEccCCcCCC-CCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcE
Q 002167 187 HQLRHLDLQSNNFVG-KIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAY 265 (957)
Q Consensus 187 ~~L~~L~L~~n~l~~-~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~ 265 (957)
+.|++|||.+|++.. .+|..++ .++.|+.|.|++|.+. .+|..++++++|+.|.+++|.+. .+|.+++. ++.|++
T Consensus 102 p~levldltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~-lt~lre 177 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD-LTRLRE 177 (264)
T ss_pred chhhhhhccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH-HHHHHH
Confidence 888888888887753 5677777 7778888888888877 66777888888888888888777 77777776 777777
Q ss_pred EECcCCcCCccCcccccC
Q 002167 266 LDLSSNGFSGHIPSSFSN 283 (957)
Q Consensus 266 L~Ls~n~l~~~~p~~l~~ 283 (957)
|++.+|+++ .+|..+++
T Consensus 178 lhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 178 LHIQGNRLT-VLPPELAN 194 (264)
T ss_pred Hhcccceee-ecChhhhh
Confidence 777777776 44544444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=2.4e-17 Score=150.00 Aligned_cols=163 Identities=29% Similarity=0.475 Sum_probs=90.3
Q ss_pred CCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCc
Q 002167 136 QFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLA 215 (957)
Q Consensus 136 ~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~ 215 (957)
.+.+++.|.||.|+++ .+|+.+.. +.+|++|++++|++. .+|..++.+++|++|+++-|++.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--------------- 92 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--------------- 92 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh---------------
Confidence 4455555666666665 55666655 566666666655554 44445555555555555555444
Q ss_pred EEEccCCCCCCCCCcccCCCCcccEEeccCCCCcc-ccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEecc
Q 002167 216 YLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG-EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEY 294 (957)
Q Consensus 216 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 294 (957)
..|..|+.++.|++||+.+|++.. .+|..++. +..|+.|.++.|.+. .+|..++++++|+.|.+..
T Consensus 93 -----------~lprgfgs~p~levldltynnl~e~~lpgnff~-m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 93 -----------ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY-MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred -----------cCccccCCCchhhhhhccccccccccCCcchhH-HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeecc
Confidence 444455555555555555554432 34445544 555555556655555 5555566666666666666
Q ss_pred CcCcccCCccccccCcCceeeccCCcCCCCCCcchhc
Q 002167 295 NNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFE 331 (957)
Q Consensus 295 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 331 (957)
|.+. .+|..++.++.|++|.+.+|.++ .+|+.++.
T Consensus 160 ndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~ 194 (264)
T KOG0617|consen 160 NDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN 194 (264)
T ss_pred Cchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence 6555 45566666666666666666665 44544443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=6.5e-15 Score=174.04 Aligned_cols=118 Identities=36% Similarity=0.630 Sum_probs=105.4
Q ss_pred cceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECc
Q 002167 759 TFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS 838 (957)
Q Consensus 759 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls 838 (957)
.++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCC--CCcccCCcccCCcCCCCCCCCCCCC
Q 002167 839 NNQLEGPIPGGPQ--FNTFGNDSYSGNSGLCGFPLSKSCS 876 (957)
Q Consensus 839 ~N~l~g~ip~~~~--~~~~~~~~~~gn~~lcg~~~~~~c~ 876 (957)
+|+++|.+|.... +.......+.||+++||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 9999999997532 1122345678999999977556674
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.49 E-value=2.3e-13 Score=160.91 Aligned_cols=152 Identities=34% Similarity=0.611 Sum_probs=99.2
Q ss_pred CCCCHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCCCCCc----cccceEecCC--C--CcEEEEEcCCCC
Q 002167 26 ILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCC----SWDGVTCDSA--T--GHVIGLDLSCSW 97 (957)
Q Consensus 26 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~c----~w~gv~c~~~--~--~~v~~l~L~~~~ 97 (957)
..+.++|.+||+++|+.+..+. ..+|.. ..|| .|.||.|... . .+|+.|+|++++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~----------------~~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~ 429 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL----------------RFGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQG 429 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc----------------cCCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCC
Confidence 3567789999999999986432 247964 3332 7999999532 1 247777777776
Q ss_pred CccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCC
Q 002167 98 LHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIG 177 (957)
Q Consensus 98 l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~ 177 (957)
+.|.+|+ .+ +.+++|+.|+|++|.+.|.+|..+.. +++|++|+|++|.+.+
T Consensus 430 L~g~ip~---------------------------~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~-l~~L~~LdLs~N~lsg 480 (623)
T PLN03150 430 LRGFIPN---------------------------DI-SKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNG 480 (623)
T ss_pred ccccCCH---------------------------HH-hCCCCCCEEECCCCcccCcCChHHhC-CCCCCEEECCCCCCCC
Confidence 6665544 34 55666666666666666666666665 6667777777776666
Q ss_pred CcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCC
Q 002167 178 HIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNS 223 (957)
Q Consensus 178 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~ 223 (957)
.+|..++++++|++|+|++|.++|.+|..+.....++..+++.+|.
T Consensus 481 ~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 481 SIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 6666666667777777777766666666665323445555555554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=1.4e-12 Score=140.81 Aligned_cols=173 Identities=28% Similarity=0.467 Sum_probs=100.0
Q ss_pred CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL 217 (957)
Q Consensus 138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L 217 (957)
+--...||+.|++. ++|..+.. +..|+.+.|..|.+. .+|..+.++..|.+|+|+.|+++ .+|..++ .+ -|+.|
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~l-pLkvl 148 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DL-PLKVL 148 (722)
T ss_pred cchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cC-cceeE
Confidence 33344566666665 66665555 556666666666554 45555666666666666666665 5565554 33 36666
Q ss_pred EccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcC
Q 002167 218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNF 297 (957)
Q Consensus 218 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 297 (957)
-+++|+++ .+|..++.+.+|..||.+.|++. .+|..++. +.+|+.|.+..|++. .+|..+..+ .|..||++.|++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~-l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY-LTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh-HHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence 66666665 55555665566666666666665 55555554 566666666666655 344444432 355566666655
Q ss_pred cccCCccccccCcCceeeccCCcCC
Q 002167 298 VGKIPDMFTNLTQLSFLGLAYNELI 322 (957)
Q Consensus 298 ~~~~p~~l~~l~~L~~L~L~~n~l~ 322 (957)
. .+|-.|.+|+.|++|-|.+|.+.
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCC
Confidence 5 45555666666666666666554
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=2.6e-12 Score=138.62 Aligned_cols=196 Identities=29% Similarity=0.442 Sum_probs=164.9
Q ss_pred cCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCC
Q 002167 109 FFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQ 188 (957)
Q Consensus 109 ~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 188 (957)
-.+..-...||+.|.+.. +|..+ ..+..|+.+.|..|.+. .+|..+++ +..|.+|||+.|+++ .+|..+..|+
T Consensus 72 ~~ltdt~~aDlsrNR~~e--lp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~lp- 144 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFSE--LPEEA-CAFVSLESLILYHNCIR-TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCDLP- 144 (722)
T ss_pred ccccchhhhhcccccccc--CchHH-HHHHHHHHHHHHhccce-ecchhhhh-hhHHHHhhhccchhh-cCChhhhcCc-
Confidence 345556778999999865 67666 77888999999999998 99999998 999999999999987 6677777765
Q ss_pred CCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEEC
Q 002167 189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDL 268 (957)
Q Consensus 189 L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~L 268 (957)
|+.|-+++|+++ .+|..++ .+..|..||.+.|.+. .+|..++.+.+|+.|.++.|++. .+|+.+. .-.|..||+
T Consensus 145 Lkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~--~LpLi~lDf 218 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC--SLPLIRLDF 218 (722)
T ss_pred ceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh--CCceeeeec
Confidence 999999999998 8999998 8999999999999998 77888999999999999999998 8999887 346899999
Q ss_pred cCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccc---cCcCceeeccCC
Q 002167 269 SSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTN---LTQLSFLGLAYN 319 (957)
Q Consensus 269 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~---l~~L~~L~L~~n 319 (957)
+.|+++ .+|-.|.+|+.|++|.|.+|.+.. .|..+.. ..--++|+..-|
T Consensus 219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ccCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence 999999 889999999999999999999973 4444432 222345555555
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=2.9e-10 Score=129.07 Aligned_cols=175 Identities=37% Similarity=0.531 Sum_probs=78.7
Q ss_pred CCCCCEEEccCCcCCCCcchhccCCC-CCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccE
Q 002167 162 ITQLAYLDLSINSFIGHIPSSFSNLH-QLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCY 240 (957)
Q Consensus 162 l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 240 (957)
++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+. .+++|+.|++++|+++ .+|...+.++.|+.
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN 190 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence 344444555444444 2233333332 4555555555444 3333333 4455555555555544 22333334445555
Q ss_pred EeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCc
Q 002167 241 LDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNE 320 (957)
Q Consensus 241 L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 320 (957)
|++++|++. .+|..+.. ...|+++.+++|.+. ..+..+.++.++..+.+.+|++.. .+..++.++.++.|++++|.
T Consensus 191 L~ls~N~i~-~l~~~~~~-~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 191 LDLSGNKIS-DLPPEIEL-LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred eeccCCccc-cCchhhhh-hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccc
Confidence 555555554 44444322 334555555555322 233344444555555544444432 13444445555555555555
Q ss_pred CCCCCCcchhcccCCceEecCCCCCc
Q 002167 321 LIGSIPSSIFELLNLTEIYLSFSNFS 346 (957)
Q Consensus 321 l~~~~p~~l~~l~~L~~L~L~~n~l~ 346 (957)
++. ++. ++.+.+++.|++++|.+.
T Consensus 267 i~~-i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 267 ISS-ISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccc-ccc-ccccCccCEEeccCcccc
Confidence 442 222 444555555555554444
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=1.9e-10 Score=130.48 Aligned_cols=199 Identities=36% Similarity=0.521 Sum_probs=159.3
Q ss_pred eeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCC-CCCEEEccCCcCCCCcchhccCCCCCCEEEc
Q 002167 116 KLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNIT-QLAYLDLSINSFIGHIPSSFSNLHQLRHLDL 194 (957)
Q Consensus 116 ~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 194 (957)
.++++.+.+... ...+ ..++.++.|++.+|.++ .+|..... +. +|+.|++++|.+. .+|..+..+++|+.|++
T Consensus 97 ~l~~~~~~~~~~--~~~~-~~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRSN--ISEL-LELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170 (394)
T ss_pred eeeccccccccC--chhh-hcccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhcccccccccc
Confidence 577777766332 2233 55678999999999998 88888775 64 8999999999887 45566889999999999
Q ss_pred cCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCC
Q 002167 195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFS 274 (957)
Q Consensus 195 ~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~ 274 (957)
++|++. .+|...+ ..+.|+.|++++|.++ .+|..+.....|++|.+++|... .++..+.. +.++..+.+.+|++.
T Consensus 171 ~~N~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~-~~~l~~l~l~~n~~~ 245 (394)
T COG4886 171 SFNDLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN-LKNLSGLELSNNKLE 245 (394)
T ss_pred CCchhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh-cccccccccCCceee
Confidence 999998 7777665 7899999999999998 56666667778999999999654 56666665 888999998888887
Q ss_pred ccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcc
Q 002167 275 GHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSS 328 (957)
Q Consensus 275 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 328 (957)
..+..++.++++++|++++|.++...+ ++.+.+++.|++++|.+....+..
T Consensus 246 -~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 246 -DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred -eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 346788899999999999999985433 889999999999999988665543
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=7.6e-11 Score=123.88 Aligned_cols=212 Identities=26% Similarity=0.303 Sum_probs=97.2
Q ss_pred cCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCC--cccCCCCcccEEeccCCCCccccchhHhhhcc
Q 002167 184 SNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIP--SSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT 261 (957)
Q Consensus 184 ~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~ 261 (957)
.++.+|+...|.++...........+.|++++.|||++|-+....| .....+++|+.|+++.|++..........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~--- 194 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL--- 194 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---
Confidence 4566666666666655421111233356666666666665543211 11234455555555555443222111111
Q ss_pred CCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCccc-CCccccccCcCceeeccCCcCCCCCCcchhcccCCceEec
Q 002167 262 QLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK-IPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYL 340 (957)
Q Consensus 262 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 340 (957)
.+++|+.|.++.|.++.. +-..+..+++|+.|+|..|.....-.....-+..|++|+|
T Consensus 195 ---------------------~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 195 ---------------------LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred ---------------------hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 334455555555554421 1112234455555555555322111122223445555555
Q ss_pred CCCCCcccccchhhhcCCCCcEEEcccccccccccccC-----CCccccccccccccccCCCcCh--hhhcCCCCCEEEC
Q 002167 341 SFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTA-----NSSFPNLSALDLSACNISEFPD--NLRTQHQLELLDL 413 (957)
Q Consensus 341 ~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-----~~~l~~L~~L~L~~~~l~~lp~--~l~~~~~L~~L~L 413 (957)
++|++.........+.++.|+.|+++.+.+........ ...+++|++|++..|++.+++. .+..+++|+.|.+
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 55555433333344455555555555555433322222 2345666666666666654442 2444455555555
Q ss_pred cCCcCC
Q 002167 414 SENQIG 419 (957)
Q Consensus 414 s~n~l~ 419 (957)
..|.+.
T Consensus 334 ~~n~ln 339 (505)
T KOG3207|consen 334 TLNYLN 339 (505)
T ss_pred cccccc
Confidence 555544
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=8.6e-11 Score=123.49 Aligned_cols=185 Identities=24% Similarity=0.191 Sum_probs=127.1
Q ss_pred cCCCCCEEEccCCcCCCCcc--hhccCCCCCCEEEccCCcCCCCCc-hhhhhCCCCCcEEEccCCCCCCCCCcc-cCCCC
Q 002167 161 NITQLAYLDLSINSFIGHIP--SSFSNLHQLRHLDLQSNNFVGKIP-ASLGNNITQLAYLDLSSNSFSGHIPSS-FSNLQ 236 (957)
Q Consensus 161 ~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~ 236 (957)
++.+|+.+.|.++.+. ..+ .....|++++.|||+.|-+..-.+ ..+.+.+++|+.|+|+.|.+....... -..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 3889999999988764 223 356789999999999997653222 345568999999999999986332221 13578
Q ss_pred cccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccC-CccccccCcCceee
Q 002167 237 QLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI-PDMFTNLTQLSFLG 315 (957)
Q Consensus 237 ~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~ 315 (957)
+|+.|.++.|.++-.--..+...+++|+.|+|..|............+..|++|+|++|.+.... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 99999999999984444445555899999999999643344444566788999999998876421 13467788888888
Q ss_pred ccCCcCCCC-CCcc-----hhcccCCceEecCCCCCc
Q 002167 316 LAYNELIGS-IPSS-----IFELLNLTEIYLSFSNFS 346 (957)
Q Consensus 316 L~~n~l~~~-~p~~-----l~~l~~L~~L~L~~n~l~ 346 (957)
++.+.+... .|+. ....++|++|++..|++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 888876532 2221 223444555555555443
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.95 E-value=1e-10 Score=119.87 Aligned_cols=39 Identities=28% Similarity=0.202 Sum_probs=23.0
Q ss_pred CCCCCEEEccCCcCCCCcch----hccCCCCCCEEEccCCcCC
Q 002167 162 ITQLAYLDLSINSFIGHIPS----SFSNLHQLRHLDLQSNNFV 200 (957)
Q Consensus 162 l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~ 200 (957)
+++|++||||+|.+....+. .+..+..|++|.|.+|.+.
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 45677777777765433332 2345667777777766553
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=2e-09 Score=104.19 Aligned_cols=128 Identities=28% Similarity=0.339 Sum_probs=45.4
Q ss_pred cCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCC
Q 002167 135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQL 214 (957)
Q Consensus 135 ~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L 214 (957)
.+..++++|+|.+|.|+ .|. .++..+.+|+.|+|++|.++.. + .+..+++|++|++++|+++ .+...+...+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 45556788888888776 443 4543377888888888887743 2 4777888888888888887 4555554467888
Q ss_pred cEEEccCCCCCCCC-CcccCCCCcccEEeccCCCCccccch---hHhhhccCCcEEEC
Q 002167 215 AYLDLSSNSFSGHI-PSSFSNLQQLCYLDLDDNHFVGEIPA---SLGNNITQLAYLDL 268 (957)
Q Consensus 215 ~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~ip~---~l~~~l~~L~~L~L 268 (957)
++|++++|+|...- -..++.+++|++|++.+|.+.. .+. .+...+|+|+.||-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCC
Confidence 88888888886421 2345667788888888887762 231 22233677777664
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.91 E-value=2.3e-09 Score=129.62 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=29.2
Q ss_pred cccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChh
Q 002167 382 FPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSW 425 (957)
Q Consensus 382 l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~ 425 (957)
++++..+.+.+|.....+.|..-.++|+.|.+..+.....+.+.
T Consensus 746 f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 746 FPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred HHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCH
Confidence 55666666666666666666666778888888877665554443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=4e-10 Score=112.38 Aligned_cols=134 Identities=25% Similarity=0.269 Sum_probs=79.3
Q ss_pred CCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCcee
Q 002167 235 LQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFL 314 (957)
Q Consensus 235 l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 314 (957)
...|+++|+++|.++ .+.+++.- .+.++.|++++|.+... ..++.+++|+.|||++|.++ .+..+-..+.++++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL-~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKL-APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhh-ccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 455677777777766 66666654 66777777777776632 23666667777777777665 233344456666666
Q ss_pred eccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCcccccccccccccc
Q 002167 315 GLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACN 394 (957)
Q Consensus 315 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 394 (957)
.|++|.+.. -+.++++-+|..||+++|++. ..........+|.|+.+.+.+|.
T Consensus 358 ~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie-------------------------~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQNKIET--LSGLRKLYSLVNLDLSSNQIE-------------------------ELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhhhhHhh--hhhhHhhhhheeccccccchh-------------------------hHHHhcccccccHHHHHhhcCCC
Confidence 666666531 133445555555555555554 33344444556666666666666
Q ss_pred CCCcCh
Q 002167 395 ISEFPD 400 (957)
Q Consensus 395 l~~lp~ 400 (957)
+..+++
T Consensus 411 l~~~vd 416 (490)
T KOG1259|consen 411 LAGSVD 416 (490)
T ss_pred ccccch
Confidence 665554
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.89 E-value=5.5e-10 Score=114.53 Aligned_cols=141 Identities=21% Similarity=0.178 Sum_probs=76.0
Q ss_pred hccCCCCCCEEEccCCcCCCCCchhh---hhCCCCCcEEEccCCCCCCCCCc-------------ccCCCCcccEEeccC
Q 002167 182 SFSNLHQLRHLDLQSNNFVGKIPASL---GNNITQLAYLDLSSNSFSGHIPS-------------SFSNLQQLCYLDLDD 245 (957)
Q Consensus 182 ~l~~l~~L~~L~L~~n~l~~~~p~~l---~~~l~~L~~L~Ls~n~l~~~~p~-------------~l~~l~~L~~L~Ls~ 245 (957)
.+.++++|++|+||+|.+....+..+ .+.+..|++|.|.+|.+.-..-. ..+.-++|+++....
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 45567788888888887764444332 23677788888888776422111 123345666666666
Q ss_pred CCCccccc---hhHhhhccCCcEEECcCCcCCcc----CcccccCcCCCcEEEeccCcCccc----CCccccccCcCcee
Q 002167 246 NHFVGEIP---ASLGNNITQLAYLDLSSNGFSGH----IPSSFSNLQQLLWLNLEYNNFVGK----IPDMFTNLTQLSFL 314 (957)
Q Consensus 246 n~l~~~ip---~~l~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L 314 (957)
|++...-. ...++..+.|+.+.++.|.|... +...+..+++|+.|||.+|.++.. +...+..+++|+.|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 66542111 11222345666666666655421 223345566666666666655421 22334445555555
Q ss_pred eccCCcCC
Q 002167 315 GLAYNELI 322 (957)
Q Consensus 315 ~L~~n~l~ 322 (957)
++++|.+.
T Consensus 247 ~l~dcll~ 254 (382)
T KOG1909|consen 247 NLGDCLLE 254 (382)
T ss_pred cccccccc
Confidence 55555554
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.7e-09 Score=104.61 Aligned_cols=122 Identities=26% Similarity=0.311 Sum_probs=35.9
Q ss_pred CCccEEEccCCcCCCCCCcccc-CCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCcccc-ccCCCccEEE
Q 002167 545 CKLTYLRLSGNHLEGPLPPSLT-NCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTF-AKSCVLVSLN 622 (957)
Q Consensus 545 ~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~ 622 (957)
.++++|+|++|.|+.. +.++ .+.+|+.|++++|.++ .++..-..+.|++|++++|+|+.. ++.+ ..+++|++|+
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 3455555555555532 2333 3456666666666665 333322335666666666666633 2223 3466666666
Q ss_pred ccCCcCccCC-CccccCCCCCcEEeCCCCccccCc---cccccccccccEEE
Q 002167 623 LNGNRLKGPL-PPSLVNCQYLEVLDVGNNQIDDTF---PYWLDVLLELQVLI 670 (957)
Q Consensus 623 Ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~---p~~l~~l~~L~~L~ 670 (957)
+++|++...- -..+..+++|+.|++.+|+++... ...+..+|+|+.||
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 6666665421 134556666666666666665431 11344555665555
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=2.8e-09 Score=128.86 Aligned_cols=204 Identities=26% Similarity=0.363 Sum_probs=124.7
Q ss_pred CCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCC--CccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCC
Q 002167 210 NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH--FVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQL 287 (957)
Q Consensus 210 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~--l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 287 (957)
+....+...+-+|.+. .++... ..++|++|-+..|. +. .++..++..++.|++|||++|.-.+.+|..++.+-+|
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 3456677777776664 223322 23467777777775 33 6666666668888888888777666788888888888
Q ss_pred cEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCC-cccccchhhhcCCCCcEEEcc
Q 002167 288 LWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNF-SGSVELYDFAKLKNLKVLSLS 366 (957)
Q Consensus 288 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~~~~~l~~l~~L~~L~L~ 366 (957)
++|++++..+. .+|..++++..|.+|++..+.....+|.....+.+|++|.+..... .+......+..+..|+.+...
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 88888888777 6777788888888888887765555566666688888888766541 122223334445555555553
Q ss_pred cccccccccccCCCcccccc----ccccccccCCCcChhhhcCCCCCEEECcCCcCCC
Q 002167 367 NISLSVSTKLTANSSFPNLS----ALDLSACNISEFPDNLRTQHQLELLDLSENQIGG 420 (957)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~L~----~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~ 420 (957)
.... .........+.|. .+.+..+.....+..+..+.+|+.|.+.++.+..
T Consensus 677 ~~s~---~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 677 ISSV---LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred cchh---HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCch
Confidence 3321 1111112222222 3333334444555566667777777777776653
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.86 E-value=6.4e-10 Score=110.92 Aligned_cols=129 Identities=29% Similarity=0.334 Sum_probs=81.2
Q ss_pred ccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEe
Q 002167 260 ITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIY 339 (957)
Q Consensus 260 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 339 (957)
...|+++||++|.|+ .+.++..-.+.++.|++++|.+... ..+..+.+|+.|||++|.++ .+..+-.+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~K-------- 350 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLK-------- 350 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhh--------
Confidence 345666666666665 4445555566666666666666532 22555666666666666554 22222233
Q ss_pred cCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcCh--hhhcCCCCCEEECcCCc
Q 002167 340 LSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPD--NLRTQHQLELLDLSENQ 417 (957)
Q Consensus 340 L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~--~l~~~~~L~~L~Ls~n~ 417 (957)
+.+++.|.+++|.+ ........+-+|..|++++|+|.++.+ .++++|-|+++.+.+|.
T Consensus 351 -----------------LGNIKtL~La~N~i---E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 351 -----------------LGNIKTLKLAQNKI---ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred -----------------hcCEeeeehhhhhH---hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 44455555555542 233445566788999999999877643 58899999999999999
Q ss_pred CCC
Q 002167 418 IGG 420 (957)
Q Consensus 418 l~~ 420 (957)
+.+
T Consensus 411 l~~ 413 (490)
T KOG1259|consen 411 LAG 413 (490)
T ss_pred ccc
Confidence 974
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=6.5e-09 Score=82.54 Aligned_cols=60 Identities=47% Similarity=0.657 Sum_probs=34.5
Q ss_pred CCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcc
Q 002167 783 SLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL 842 (957)
Q Consensus 783 ~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l 842 (957)
+|+.|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555554445555566666666666666555555556666666666666553
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.69 E-value=9.7e-09 Score=81.52 Aligned_cols=61 Identities=38% Similarity=0.624 Sum_probs=57.3
Q ss_pred ccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcc
Q 002167 758 TTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKL 818 (957)
Q Consensus 758 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l 818 (957)
++|+.|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3688999999999988888999999999999999999998889999999999999999986
No 41
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.68 E-value=1.8e-08 Score=72.92 Aligned_cols=40 Identities=40% Similarity=0.815 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCC--CCCccccceEec
Q 002167 30 HDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKED--ADCCSWDGVTCD 82 (957)
Q Consensus 30 ~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~--~~~c~w~gv~c~ 82 (957)
++|++||++||+++..++. ..+.+|... ++||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~-------------~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPS-------------GVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC--------------CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccC-------------cccccCCCcCCCCCeeeccEEeC
Confidence 6899999999999986543 389999886 799999999995
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=4.6e-09 Score=119.27 Aligned_cols=85 Identities=29% Similarity=0.347 Sum_probs=57.0
Q ss_pred ceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCccccc---Cccc-CcCCCCCCeE
Q 002167 760 FATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGR---IPTQ-LASLNYLSVL 835 (957)
Q Consensus 760 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~---ip~~-l~~l~~L~~L 835 (957)
|+.+++++|.+.. +++.+..+..+..|++++|++... ..+.....+..+..+.|.+... .... ......+...
T Consensus 234 L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 5667777777753 235666777888888888887754 2355666777777777776522 1121 4566778888
Q ss_pred ECccCcccccCC
Q 002167 836 NLSNNQLEGPIP 847 (957)
Q Consensus 836 ~ls~N~l~g~ip 847 (957)
.+.+|+.....+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 888888776655
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.51 E-value=2.1e-08 Score=113.93 Aligned_cols=198 Identities=32% Similarity=0.385 Sum_probs=92.0
Q ss_pred CCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCc
Q 002167 185 NLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLA 264 (957)
Q Consensus 185 ~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~ 264 (957)
.+..++.++++.|.+. .+-..+. .+++|+.|++.+|.+... ...+..+++|++|++++|.|+ .+.. +.. ++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~-~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~-l~~-l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLS-KLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEG-LST-LTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccc-cccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccc-hhh-ccchh
Confidence 3445555556666554 2122222 455566666666655532 111444555555555555554 2211 111 34455
Q ss_pred EEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCC
Q 002167 265 YLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSN 344 (957)
Q Consensus 265 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 344 (957)
.|++++|.+... ..+..++.|+.+++++|.+...-+ . . ...+.+++.+++..|.
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~----------------------~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-D----------------------E-LSELISLEELDLGGNS 197 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhh-h----------------------h-hhhccchHHHhccCCc
Confidence 555555554421 223334444555555554443222 0 1 2344444444444444
Q ss_pred CcccccchhhhcCCCCcEEEcccccccccccccCCCccc--cccccccccccCCCcChhhhcCCCCCEEECcCCcCCC
Q 002167 345 FSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFP--NLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGG 420 (957)
Q Consensus 345 l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~--~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~ 420 (957)
+..... +..+..+..+++..|.+... ......+ +|+.+++.++.+..++..+..+..+..+++.+|++..
T Consensus 198 i~~i~~---~~~~~~l~~~~l~~n~i~~~---~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 198 IREIEG---LDLLKKLVLLSLLDNKISKL---EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred hhcccc---hHHHHHHHHhhcccccceec---cCcccchhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence 431111 11222222234444432221 1112222 3677777777777666666667777777777777653
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=6.7e-09 Score=103.91 Aligned_cols=108 Identities=20% Similarity=0.169 Sum_probs=61.0
Q ss_pred CCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCC-CccccchhHhhhccCCcEE
Q 002167 188 QLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH-FVGEIPASLGNNITQLAYL 266 (957)
Q Consensus 188 ~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~ip~~l~~~l~~L~~L 266 (957)
.|++|||+...++..--..+...|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++..--..+..+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477777776666533333333466777777777777776666666667777777777654 3322223344446667777
Q ss_pred ECcCCcCCccCcccc-cC-cCCCcEEEeccC
Q 002167 267 DLSSNGFSGHIPSSF-SN-LQQLLWLNLEYN 295 (957)
Q Consensus 267 ~Ls~n~l~~~~p~~l-~~-l~~L~~L~L~~n 295 (957)
++++|.+.......+ .. -++|+.|+++++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 777766553322111 11 134555555554
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.46 E-value=7.2e-09 Score=108.74 Aligned_cols=212 Identities=19% Similarity=0.151 Sum_probs=83.7
Q ss_pred cCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCC-ccCccCchhhhhcCCCCCEEEccCCc-CCC-CcchhccC
Q 002167 109 FFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSC-NFTGSIPPSLGNNITQLAYLDLSINS-FIG-HIPSSFSN 185 (957)
Q Consensus 109 ~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~ip~~l~~~l~~L~~L~Ls~n~-l~~-~~p~~l~~ 185 (957)
..++++++|++.++.......-..+...+++|++|+|..| .++...-..+...+++|++|+++.+. +++ .+.....+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 3455555555555432111111122244555555555553 23322223344445555555555552 221 11222334
Q ss_pred CCCCCEEEccCCcCC-CCCchhhhhCCCCCcEEEccCCC-CCCCCC-cccCCCCcccEEeccCCCC-ccccchhHhhhcc
Q 002167 186 LHQLRHLDLQSNNFV-GKIPASLGNNITQLAYLDLSSNS-FSGHIP-SSFSNLQQLCYLDLDDNHF-VGEIPASLGNNIT 261 (957)
Q Consensus 186 l~~L~~L~L~~n~l~-~~~p~~l~~~l~~L~~L~Ls~n~-l~~~~p-~~l~~l~~L~~L~Ls~n~l-~~~ip~~l~~~l~ 261 (957)
+..++.+.+.+|.=. ......+...+..+..+++.++. +++..- ..=..+..|++|+.+++.. +...-..++++..
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 444555544444211 00001111123334444444442 221110 0112345566666655432 2222234444555
Q ss_pred CCcEEECcCCcC-CccCcccc-cCcCCCcEEEeccCcCcc--cCCccccccCcCceeeccCCc
Q 002167 262 QLAYLDLSSNGF-SGHIPSSF-SNLQQLLWLNLEYNNFVG--KIPDMFTNLTQLSFLGLAYNE 320 (957)
Q Consensus 262 ~L~~L~Ls~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~ 320 (957)
+|+.|.++.++- +..-...+ .+++.|+.+++..+.... .+...-.+++.|+.+.+++|.
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence 666666665542 21111112 134555555555554321 111112245555555555554
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.7e-08 Score=101.02 Aligned_cols=179 Identities=20% Similarity=0.156 Sum_probs=98.4
Q ss_pred CCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCc-CCCCCchhhhhCCCCCcEE
Q 002167 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNN-FVGKIPASLGNNITQLAYL 217 (957)
Q Consensus 139 ~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~~l~~L~~L 217 (957)
+|++||||+..++-.--..+...+.+|+.|.|.++++.+.+...+++-.+|+.|+++.+. ++..-..-+..+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 577777777766532222333337777777777777777777777777777777777664 3322233344567777777
Q ss_pred EccCCCCCCCCCcc-cCC-CCcccEEeccCCCC--ccccchhHhhhccCCcEEECcCCc-CCccCcccccCcCCCcEEEe
Q 002167 218 DLSSNSFSGHIPSS-FSN-LQQLCYLDLDDNHF--VGEIPASLGNNITQLAYLDLSSNG-FSGHIPSSFSNLQQLLWLNL 292 (957)
Q Consensus 218 ~Ls~n~l~~~~p~~-l~~-l~~L~~L~Ls~n~l--~~~ip~~l~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L 292 (957)
+|+.|.++...... +.. -.+|..|+++++.- ...--..+...+++|.+|||++|. ++......|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77777654322111 111 14566666666531 111112333346777777777654 23223334556666666666
Q ss_pred ccCcCcccCCcc---ccccCcCceeeccCC
Q 002167 293 EYNNFVGKIPDM---FTNLTQLSFLGLAYN 319 (957)
Q Consensus 293 ~~n~l~~~~p~~---l~~l~~L~~L~L~~n 319 (957)
+.|.. .+|.. +...+.|.+|++.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 66642 33432 233445555555443
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=4.7e-08 Score=109.02 Aligned_cols=176 Identities=30% Similarity=0.366 Sum_probs=80.6
Q ss_pred CccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccC----------ccCchhhhhcCCCCCEEEccCCcCC
Q 002167 107 SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFT----------GSIPPSLGNNITQLAYLDLSINSFI 176 (957)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~----------~~ip~~l~~~l~~L~~L~Ls~n~l~ 176 (957)
+++.|+.||+|.|.++++... .++..--..|++|-.++. +. |.+..+.. -..|.+.+.++|.+.
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~---~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTA---KGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPV--WNKLATASFSYNRLV 177 (1096)
T ss_pred eeccccceeeEEecCcchhhh---hhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchh--hhhHhhhhcchhhHH
Confidence 678889999999998887532 111010112222222211 00 11111111 013444555555544
Q ss_pred CCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCc-ccCCCCcccEEeccCCCCccccchh
Q 002167 177 GHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS-SFSNLQQLCYLDLDDNHFVGEIPAS 255 (957)
Q Consensus 177 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~ip~~ 255 (957)
.+..++.-++.|++|+|++|++.. +. .+. .+++|++|||++|.+.. +|. ....+. |+.|.+++|.++ .+ ..
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~-v~-~Lr-~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lrnN~l~-tL-~g 249 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTK-VD-NLR-RLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLRNNALT-TL-RG 249 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhh-hH-HHH-hcccccccccccchhcc-ccccchhhhh-heeeeecccHHH-hh-hh
Confidence 333444555555555665555542 11 332 55556666666655552 222 122222 555566655554 11 12
Q ss_pred HhhhccCCcEEECcCCcCCccC-cccccCcCCCcEEEeccCcC
Q 002167 256 LGNNITQLAYLDLSSNGFSGHI-PSSFSNLQQLLWLNLEYNNF 297 (957)
Q Consensus 256 l~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l 297 (957)
+.+ +++|+.||+++|-+.+.- -.-+..+..|+.|.|.+|.+
T Consensus 250 ie~-LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 250 IEN-LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHh-hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 333 555556666655554321 11233444555555555544
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.20 E-value=8.5e-08 Score=106.99 Aligned_cols=179 Identities=28% Similarity=0.291 Sum_probs=94.2
Q ss_pred chhhhhCCCCCcEEEccCCCCCCCCCcccCCC-CcccEEeccCCCCc----------cccchhHhhhccCCcEEECcCCc
Q 002167 204 PASLGNNITQLAYLDLSSNSFSGHIPSSFSNL-QQLCYLDLDDNHFV----------GEIPASLGNNITQLAYLDLSSNG 272 (957)
Q Consensus 204 p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~----------~~ip~~l~~~l~~L~~L~Ls~n~ 272 (957)
|..++ ...+|++|.|.++.+... ..+..+ .+|++|.-.+ .+. |++..+.. .-.|...+.++|.
T Consensus 102 pi~if-pF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 102 PISIF-PFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPV--WNKLATASFSYNR 175 (1096)
T ss_pred Cceec-cccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchh--hhhHhhhhcchhh
Confidence 66777 788999999999887531 111111 1233332211 110 11111111 2245555556666
Q ss_pred CCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCc-chhcccCCceEecCCCCCcccccc
Q 002167 273 FSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPS-SIFELLNLTEIYLSFSNFSGSVEL 351 (957)
Q Consensus 273 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~ 351 (957)
+. .+..++.-++.|+.|+|+.|+++.. +.+..+++|++|||++|.+. .+|. ....+. |+.|.+++|.++. .
T Consensus 176 L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t---L 247 (1096)
T KOG1859|consen 176 LV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT---L 247 (1096)
T ss_pred HH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh---h
Confidence 55 4445555666666666666666543 25566666666666666655 2222 122232 6666666665542 2
Q ss_pred hhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCC
Q 002167 352 YDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNIS 396 (957)
Q Consensus 352 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 396 (957)
..+.++.+|+.||++.|-+........++.+..|+.|.|.+|.+.
T Consensus 248 ~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 234555666666666665544444555555666666666666553
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.20 E-value=8.4e-08 Score=100.89 Aligned_cols=207 Identities=19% Similarity=0.105 Sum_probs=101.8
Q ss_pred CCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCc-cCccCchhhhhcCCCCCEEEccCC-cCCCCcch-hccCCCC
Q 002167 112 PRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCN-FTGSIPPSLGNNITQLAYLDLSIN-SFIGHIPS-SFSNLHQ 188 (957)
Q Consensus 112 ~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~ip~~l~~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~~ 188 (957)
..|+.|.+.++.-.+..-...+...++++++|++.+|. +++..-.++...+++|++|+|..| .++...-. -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 35677777776543322222333678888888888774 333333455566778888888775 23322222 2346777
Q ss_pred CCEEEccCCc-CCCCCchhhhhCCCCCcEEEccCCCCCCCCCccc----CCCCcccEEeccCCC-CccccchhHhhhccC
Q 002167 189 LRHLDLQSNN-FVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSF----SNLQQLCYLDLDDNH-FVGEIPASLGNNITQ 262 (957)
Q Consensus 189 L~~L~L~~n~-l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~Ls~n~-l~~~ip~~l~~~l~~ 262 (957)
|++|+++.|. +++.-...+..++..++.+.+.+|.=. .-+.+ +.+..+.++++..|. ++.+--..+...+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 7777777763 343333344445556666655544211 11111 223334445544443 221111223334566
Q ss_pred CcEEECcCCcCCc-cCccc-ccCcCCCcEEEeccCcC-cccCCccc-cccCcCceeeccCCc
Q 002167 263 LAYLDLSSNGFSG-HIPSS-FSNLQQLLWLNLEYNNF-VGKIPDMF-TNLTQLSFLGLAYNE 320 (957)
Q Consensus 263 L~~L~Ls~n~l~~-~~p~~-l~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~ 320 (957)
|+.|+.+++.-.+ ..-.. ..+..+|+.|.++.|+- +..--..+ .+...|+.+++..+.
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 6777666654321 11111 23456666666666542 11111111 234555555555554
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.13 E-value=1.6e-06 Score=87.30 Aligned_cols=211 Identities=19% Similarity=0.119 Sum_probs=109.2
Q ss_pred CCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCc--hhhhhcCCCCCEEEccCCcCCCCcchhccCCCC
Q 002167 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIP--PSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQ 188 (957)
Q Consensus 111 l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip--~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 188 (957)
..-++.|.+.++.+....-...+...+++++.+||.+|.+++ .. ..+..++++|++|+|+.|++...+...-..+.+
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSd-WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISD-WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhcc-HHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 334445555566554433333344567788888888888873 22 234445888888888888876554322135668
Q ss_pred CCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCC--CcccCCC-CcccEEeccCCCCcccc-chhHhhhccCCc
Q 002167 189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHI--PSSFSNL-QQLCYLDLDDNHFVGEI-PASLGNNITQLA 264 (957)
Q Consensus 189 L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~--p~~l~~l-~~L~~L~Ls~n~l~~~i-p~~l~~~l~~L~ 264 (957)
|++|-|.+..+.-.-..++...++.+++|.++.|++.... .+..... +.+++|+.-.|...--. -..+.+-++++.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 8888887776654444444457777888888777432111 1111111 23444444333211000 001112245555
Q ss_pred EEECcCCcCCcc-CcccccCcCCCcEEEeccCcCccc-CCccccccCcCceeeccCCcCC
Q 002167 265 YLDLSSNGFSGH-IPSSFSNLQQLLWLNLEYNNFVGK-IPDMFTNLTQLSFLGLAYNELI 322 (957)
Q Consensus 265 ~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~ 322 (957)
.+-+..|.+... .......++.+-.|+|+.+++... --+.+..++.|..|.++++.+.
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 555555554321 122334445555556665555421 1123445555555555555543
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=4.7e-07 Score=90.96 Aligned_cols=86 Identities=24% Similarity=0.261 Sum_probs=37.7
Q ss_pred CCCCCEEEccCCcCCCC-CchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCc
Q 002167 186 LHQLRHLDLQSNNFVGK-IPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLA 264 (957)
Q Consensus 186 l~~L~~L~L~~n~l~~~-~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~ 264 (957)
++.++.+||.+|.++.- -...+.++++.|+.|+++.|.+...+-..-..+.+|++|-|.+..+.-.-..++...++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 34444444444444320 01122235555555555555554322111123445555555555443222223333355555
Q ss_pred EEECcCC
Q 002167 265 YLDLSSN 271 (957)
Q Consensus 265 ~L~Ls~n 271 (957)
.|+++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 5555555
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.07 E-value=2e-06 Score=101.79 Aligned_cols=150 Identities=20% Similarity=0.332 Sum_probs=90.3
Q ss_pred CCCcEEECCCCc-cCccCchhhhhcCCCCCEEEccCCcCCC-CcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCc
Q 002167 138 PSLTLLDLCSCN-FTGSIPPSLGNNITQLAYLDLSINSFIG-HIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLA 215 (957)
Q Consensus 138 ~~L~~L~Ls~n~-l~~~ip~~l~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~ 215 (957)
.+|++||+++.. +....|..++..+|.|+.|.+++-.+.. ..-....++++|+.||+++.+++ .+ .+++ ++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS-~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGIS-RLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHh-ccccHH
Confidence 467777777753 2334566666667777777777655432 23334456777777777777776 22 5555 777777
Q ss_pred EEEccCCCCCC-CCCcccCCCCcccEEeccCCCCccccch------hHhhhccCCcEEECcCCcCCccCcccc-cCcCCC
Q 002167 216 YLDLSSNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPA------SLGNNITQLAYLDLSSNGFSGHIPSSF-SNLQQL 287 (957)
Q Consensus 216 ~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip~------~l~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L 287 (957)
.|.+.+=.+.. ..-..+.+|++|++||+|..... ..+. +-+..+|+|+.||.|++.+...+-+.+ ...++|
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 77777666542 11224566778888888776543 2221 112237888888888887776443332 234455
Q ss_pred cEEE
Q 002167 288 LWLN 291 (957)
Q Consensus 288 ~~L~ 291 (957)
+.+.
T Consensus 278 ~~i~ 281 (699)
T KOG3665|consen 278 QQIA 281 (699)
T ss_pred hhhh
Confidence 5443
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.00 E-value=6.3e-07 Score=79.77 Aligned_cols=114 Identities=26% Similarity=0.316 Sum_probs=65.7
Q ss_pred CCcEEECCCCccCccCchhhhh--cCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcE
Q 002167 139 SLTLLDLCSCNFTGSIPPSLGN--NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAY 216 (957)
Q Consensus 139 ~L~~L~Ls~n~l~~~ip~~l~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~ 216 (957)
.+..++|++|.+- .+++.... ...+|...+|++|.+....+..-.+.+.++.|++.+|.++ .+|..+. .++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~A-am~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELA-AMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHh-hhHHhhh
Confidence 3445566666553 44443322 1345555666666665333333334456666666666666 6666655 6677777
Q ss_pred EEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHh
Q 002167 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLG 257 (957)
Q Consensus 217 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~ 257 (957)
|+++.|.+. ..|..+..+.+|-.|+..+|.+. +||..++
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~ 143 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF 143 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh
Confidence 777777665 45555656666666666666665 5655543
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.90 E-value=3.9e-06 Score=83.42 Aligned_cols=160 Identities=22% Similarity=0.164 Sum_probs=75.5
Q ss_pred CCCCCEEEccCCcCCCCcch----hccCCCCCCEEEccCCcCCC----CCchhhh--------hCCCCCcEEEccCCCCC
Q 002167 162 ITQLAYLDLSINSFIGHIPS----SFSNLHQLRHLDLQSNNFVG----KIPASLG--------NNITQLAYLDLSSNSFS 225 (957)
Q Consensus 162 l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~----~~p~~l~--------~~l~~L~~L~Ls~n~l~ 225 (957)
|++|+..+||+|.+....|. .+++-+.|++|.+++|.+-- .+-..++ .+-|.|+.....+|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 56666666666665544332 23455666666666665421 1111111 13455666666666654
Q ss_pred CCCC----cccCCCCcccEEeccCCCCcccc-----chhHhhhccCCcEEECcCCcCCccC----cccccCcCCCcEEEe
Q 002167 226 GHIP----SSFSNLQQLCYLDLDDNHFVGEI-----PASLGNNITQLAYLDLSSNGFSGHI----PSSFSNLQQLLWLNL 292 (957)
Q Consensus 226 ~~~p----~~l~~l~~L~~L~Ls~n~l~~~i-----p~~l~~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L 292 (957)
.-.. ..+..-.+|+++.+..|.+.-+- -..++. +.+|+.||+..|.++-.. ...+...+.|++|.+
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 2111 11122245666666666554110 011222 556666666666655321 222334445666666
Q ss_pred ccCcCcccCCccc----c--ccCcCceeeccCCcCC
Q 002167 293 EYNNFVGKIPDMF----T--NLTQLSFLGLAYNELI 322 (957)
Q Consensus 293 ~~n~l~~~~p~~l----~--~l~~L~~L~L~~n~l~ 322 (957)
..|-++......+ . ..++|..|...+|...
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 6665543222111 1 2345555555555443
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.89 E-value=1.1e-05 Score=80.44 Aligned_cols=89 Identities=25% Similarity=0.386 Sum_probs=49.6
Q ss_pred CCCCCcEEECCCCccCccCchhhhhc---CCCCCEEEccCCcCCCC----c-------chhccCCCCCCEEEccCCcCCC
Q 002167 136 QFPSLTLLDLCSCNFTGSIPPSLGNN---ITQLAYLDLSINSFIGH----I-------PSSFSNLHQLRHLDLQSNNFVG 201 (957)
Q Consensus 136 ~l~~L~~L~Ls~n~l~~~ip~~l~~~---l~~L~~L~Ls~n~l~~~----~-------p~~l~~l~~L~~L~L~~n~l~~ 201 (957)
.+..++.++||+|.|..+-...+++. -.+|+..++++- ++|. + -..+.+|++|+..+|+.|.+..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 35556666666666653333333221 345555555543 1211 1 2345677888888888887766
Q ss_pred CCchhhh---hCCCCCcEEEccCCCCC
Q 002167 202 KIPASLG---NNITQLAYLDLSSNSFS 225 (957)
Q Consensus 202 ~~p~~l~---~~l~~L~~L~Ls~n~l~ 225 (957)
..|..+. .+-+.|.+|.+++|.+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC
Confidence 6554332 25566777777777653
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.86 E-value=1.6e-06 Score=77.18 Aligned_cols=107 Identities=25% Similarity=0.389 Sum_probs=69.0
Q ss_pred CCCCEEEccCCcCCCCcch---hccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCccc
Q 002167 163 TQLAYLDLSINSFIGHIPS---SFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLC 239 (957)
Q Consensus 163 ~~L~~L~Ls~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 239 (957)
..+..+||++|++- .+++ .+.+...|...+|++|.+. .+|..+....+.++.|++++|.++ .+|..++.++.|+
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALR 103 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhh
Confidence 34566777777654 2333 3444556666677777776 666666655567777777777776 4566677777777
Q ss_pred EEeccCCCCccccchhHhhhccCCcEEECcCCcCC
Q 002167 240 YLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFS 274 (957)
Q Consensus 240 ~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~ 274 (957)
.|+++.|.+. ..|.-+.. +.++-.|+..+|.+.
T Consensus 104 ~lNl~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAP-LIKLDMLDSPENARA 136 (177)
T ss_pred hcccccCccc-cchHHHHH-HHhHHHhcCCCCccc
Confidence 7777777766 56666665 666666666666554
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=2.7e-05 Score=56.42 Aligned_cols=36 Identities=42% Similarity=0.756 Sum_probs=17.1
Q ss_pred CCcEEECCCCcCCCCCchhhhhccCCCEEECCCCccc
Q 002167 783 SLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLA 819 (957)
Q Consensus 783 ~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~ 819 (957)
+|++|++++|+++. +|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 34555555555552 3444555555555555555554
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=0.00012 Score=79.97 Aligned_cols=53 Identities=23% Similarity=0.208 Sum_probs=26.0
Q ss_pred CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCC
Q 002167 592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNN 650 (957)
Q Consensus 592 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n 650 (957)
..++.|++++|.++ .+|. -.++|+.|.+++|.-...+|..+. ++|+.|++++|
T Consensus 52 ~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 45666666666555 3331 123466666655443334444332 34555555555
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=2.2e-05 Score=93.16 Aligned_cols=135 Identities=23% Similarity=0.249 Sum_probs=96.4
Q ss_pred CCCCEEEccCCcC-CCCcchhcc-CCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccE
Q 002167 163 TQLAYLDLSINSF-IGHIPSSFS-NLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCY 240 (957)
Q Consensus 163 ~~L~~L~Ls~n~l-~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 240 (957)
.+|++||+++... ....|..++ .+|+|++|.+.+-.+...--..++.++++|+.||+|+++++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 5799999988754 223333443 5799999999887665433345566889999999999998855 67889999999
Q ss_pred EeccCCCCcc-ccchhHhhhccCCcEEECcCCcCCccC--c----ccccCcCCCcEEEeccCcCccc
Q 002167 241 LDLDDNHFVG-EIPASLGNNITQLAYLDLSSNGFSGHI--P----SSFSNLQQLLWLNLEYNNFVGK 300 (957)
Q Consensus 241 L~Ls~n~l~~-~ip~~l~~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~ 300 (957)
|.+.+-.+.. ..-..++. +++|+.||+|........ . +.-..+++|+.||.+++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 9988877653 22346676 999999999876554221 1 1223578999999998877654
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00023 Score=77.78 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=16.0
Q ss_pred CCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccC
Q 002167 471 DLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNN 508 (957)
Q Consensus 471 ~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n 508 (957)
.+|++|++|.+++|.-...+|..+. ++|+.|++++|
T Consensus 69 ~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 69 VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 3344555555554432233333221 34555555555
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.61 E-value=4e-05 Score=55.53 Aligned_cols=37 Identities=46% Similarity=0.734 Sum_probs=32.2
Q ss_pred cCCCEEECCCCcccccCcccCcCCCCCCeEECccCccc
Q 002167 806 TELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843 (957)
Q Consensus 806 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 843 (957)
++|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 47999999999999 57778999999999999999988
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.00023 Score=68.39 Aligned_cols=59 Identities=29% Similarity=0.319 Sum_probs=26.5
Q ss_pred cCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcC
Q 002167 261 TQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL 321 (957)
Q Consensus 261 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 321 (957)
.+...+||++|.+... ..|..++.|.+|.+++|+|+.+-|..-..+++|+.|.|.+|++
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 3445555555554321 2344444555555555555544333333334444444444443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.36 E-value=0.00024 Score=68.26 Aligned_cols=103 Identities=22% Similarity=0.165 Sum_probs=62.7
Q ss_pred CcEEECcCCcCCccCccccc-CcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecC
Q 002167 263 LAYLDLSSNGFSGHIPSSFS-NLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLS 341 (957)
Q Consensus 263 L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 341 (957)
=+.+++.+.++... . .++ -+.....+||++|.+... ..|..++.|.+|.+.+|.++..-|.--.-+++|+.|.+.
T Consensus 21 e~e~~LR~lkip~i-e-nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI-E-NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccch-h-hccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 34556666555421 1 122 234567788888877532 456777888888888888875544444455667777777
Q ss_pred CCCCcccccchhhhcCCCCcEEEccccc
Q 002167 342 FSNFSGSVELYDFAKLKNLKVLSLSNIS 369 (957)
Q Consensus 342 ~n~l~~~~~~~~l~~l~~L~~L~L~~~~ 369 (957)
+|.+....+...+..|++|++|.+-+|.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCc
Confidence 7777655555555566666666665555
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.95 E-value=0.00018 Score=84.23 Aligned_cols=64 Identities=25% Similarity=0.173 Sum_probs=29.0
Q ss_pred CCCCCcEEEccCCC-CCCCCCcccCC-CCcccEEeccCCC-CccccchhHhhhccCCcEEECcCCcC
Q 002167 210 NITQLAYLDLSSNS-FSGHIPSSFSN-LQQLCYLDLDDNH-FVGEIPASLGNNITQLAYLDLSSNGF 273 (957)
Q Consensus 210 ~l~~L~~L~Ls~n~-l~~~~p~~l~~-l~~L~~L~Ls~n~-l~~~ip~~l~~~l~~L~~L~Ls~n~l 273 (957)
.+++|+.|+++.+. +++..-..++. +++|++|.+.++. ++..--..+...++.|++|+++++..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 44555555555554 33322222222 4455555544444 33333333444455555555555443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.90 E-value=0.0013 Score=61.32 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=20.5
Q ss_pred hcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEcc
Q 002167 134 TDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ 195 (957)
Q Consensus 134 ~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 195 (957)
|..+++|+.+.+.. .+. .++...+.++++|+.+++..+ +...-...|.++++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 34455555555543 233 344333333444555555443 332223334444444444443
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.79 E-value=0.0023 Score=59.56 Aligned_cols=108 Identities=19% Similarity=0.232 Sum_probs=42.2
Q ss_pred chhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCC
Q 002167 155 PPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSN 234 (957)
Q Consensus 155 p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 234 (957)
++..+.++++|+.+.+.. .+...-...|.++++|+.+.+.++ +. .++...+.++++|+.+.+.. .+.......|..
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence 333333455666666653 344334445566666666666553 33 44444444555566666644 332222334455
Q ss_pred CCcccEEeccCCCCccccchhHhhhccCCcEEECc
Q 002167 235 LQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS 269 (957)
Q Consensus 235 l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls 269 (957)
+++|+.+++..+ +. .++...+.++ +|+.+.+.
T Consensus 80 ~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred cccccccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence 555555555443 32 3333333333 44444443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.74 E-value=0.00026 Score=82.91 Aligned_cols=175 Identities=24% Similarity=0.157 Sum_probs=97.5
Q ss_pred cCCCCCcEEECCCCccCccCc-hhhhhcCCCCCEEEccCC-cCCCCc----chhccCCCCCCEEEccCCc-CCCCCchhh
Q 002167 135 DQFPSLTLLDLCSCNFTGSIP-PSLGNNITQLAYLDLSIN-SFIGHI----PSSFSNLHQLRHLDLQSNN-FVGKIPASL 207 (957)
Q Consensus 135 ~~l~~L~~L~Ls~n~l~~~ip-~~l~~~l~~L~~L~Ls~n-~l~~~~----p~~l~~l~~L~~L~L~~n~-l~~~~p~~l 207 (957)
..++.|+.|.+.++.-..... ..+...+++|+.|+++++ ...... ......+++|+.|+++.+. +++..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 457788888888774332311 223334788888888763 211111 1234556788888888887 555555556
Q ss_pred hhCCCCCcEEEccCCC-CCCCCCcc-cCCCCcccEEeccCCCCccc--cchhHhhhccCCcEEECcCCcCCccCcccccC
Q 002167 208 GNNITQLAYLDLSSNS-FSGHIPSS-FSNLQQLCYLDLDDNHFVGE--IPASLGNNITQLAYLDLSSNGFSGHIPSSFSN 283 (957)
Q Consensus 208 ~~~l~~L~~L~Ls~n~-l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~--ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 283 (957)
...+++|++|.+.++. +++..-.. ..+++.|++|+++++..... +... ..++++|+.|.+....-
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~---------- 333 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNG---------- 333 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCC----------
Confidence 5567888888877776 45332222 34577788888888765311 2222 33477776655433221
Q ss_pred cCCCcEEEeccCcCc---ccCCccccccCcCceeeccCCc
Q 002167 284 LQQLLWLNLEYNNFV---GKIPDMFTNLTQLSFLGLAYNE 320 (957)
Q Consensus 284 l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~ 320 (957)
+..++.+.+...... .........+++++.+.+..+.
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 333444443332221 1122234556666666666665
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.29 E-value=0.0039 Score=62.92 Aligned_cols=60 Identities=27% Similarity=0.344 Sum_probs=28.6
Q ss_pred CcccEEECCCCcCCCCCccccccCCCccEEEccCC--cCccCCCccccCCCCCcEEeCCCCccc
Q 002167 592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGN--RLKGPLPPSLVNCQYLEVLDVGNNQID 653 (957)
Q Consensus 592 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~ls~n~l~ 653 (957)
..|+.|.+.+..++.. ..|-.+++|+.|.++.| ++.+.++.....+++|++|++++|++.
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3455555555544422 12334455555555555 444444433444455555555555544
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.00027 Score=70.93 Aligned_cols=86 Identities=23% Similarity=0.329 Sum_probs=54.2
Q ss_pred CCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcE
Q 002167 137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAY 216 (957)
Q Consensus 137 l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~ 216 (957)
+.+.+.|++.+|.+. .| +++..++.|++|.||-|.++..-| +..|++|++|+|..|.|...-.-...+++++|+.
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 456677777777776 33 345557888888888887775544 6777888888888777653222222235666666
Q ss_pred EEccCCCCCCC
Q 002167 217 LDLSSNSFSGH 227 (957)
Q Consensus 217 L~Ls~n~l~~~ 227 (957)
|-|..|.-.+.
T Consensus 93 LWL~ENPCc~~ 103 (388)
T KOG2123|consen 93 LWLDENPCCGE 103 (388)
T ss_pred HhhccCCcccc
Confidence 66665555443
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.12 E-value=0.0044 Score=62.55 Aligned_cols=56 Identities=32% Similarity=0.422 Sum_probs=23.5
Q ss_pred CCCcEEEcccccccccccccCCCccccccccccccccCCCcCh----hhhcCCCCCEEEC
Q 002167 358 KNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPD----NLRTQHQLELLDL 413 (957)
Q Consensus 358 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~----~l~~~~~L~~L~L 413 (957)
++|+++++++|++...........+++|..|++.+|..+.+-+ .+.-+++|++||-
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 3333444444433333333333444445555555554433321 1333455555543
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.00056 Score=68.78 Aligned_cols=85 Identities=24% Similarity=0.264 Sum_probs=53.7
Q ss_pred CCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccch-hHhhhccCCc
Q 002167 186 LHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPA-SLGNNITQLA 264 (957)
Q Consensus 186 l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~-~l~~~l~~L~ 264 (957)
+.+.+.|++-+|.+. ..++...|+.|++|.|+-|.|+..-| +..|++|++|+|..|.|. .+.+ ....++++|+
T Consensus 18 l~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 445566677677665 23455578888888888888775433 667788888888888775 3332 1223366666
Q ss_pred EEECcCCcCCcc
Q 002167 265 YLDLSSNGFSGH 276 (957)
Q Consensus 265 ~L~Ls~n~l~~~ 276 (957)
.|.|..|.-.+.
T Consensus 92 ~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 92 TLWLDENPCCGE 103 (388)
T ss_pred hHhhccCCcccc
Confidence 666666655543
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.50 E-value=0.0058 Score=36.75 Aligned_cols=19 Identities=53% Similarity=0.814 Sum_probs=9.1
Q ss_pred CCEEECCCCcccccCcccCc
Q 002167 808 LESLDLSSNKLAGRIPTQLA 827 (957)
Q Consensus 808 L~~L~Ls~N~l~g~ip~~l~ 827 (957)
|++|||++|+++ .||..++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4444443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.17 E-value=0.0065 Score=36.54 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=8.7
Q ss_pred ceEEEcccCccCccCccccc
Q 002167 760 FATIDLSSNRFQRKIPEVVG 779 (957)
Q Consensus 760 L~~L~Ls~N~l~~~ip~~l~ 779 (957)
|+.|||++|+++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 344455555444 3444443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.15 E-value=0.0016 Score=74.09 Aligned_cols=86 Identities=24% Similarity=0.295 Sum_probs=41.3
Q ss_pred CCeeeCCCCCCCCCCCC--chhhcCCCCCcEEECCCCccCccCchhhhhcC----CCCCEEEccCCcCCCC----cchhc
Q 002167 114 LRKLNLAFNDFNGSKIS--SGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNI----TQLAYLDLSINSFIGH----IPSSF 183 (957)
Q Consensus 114 L~~L~Ls~n~~~~~~i~--~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l----~~L~~L~Ls~n~l~~~----~p~~l 183 (957)
+.+|.|.+|.+...... ...+...+.|..|++++|.+.+.--..+...+ ..|++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56666666666443111 01124555666666666666533322232222 2344555555554432 33344
Q ss_pred cCCCCCCEEEccCCcC
Q 002167 184 SNLHQLRHLDLQSNNF 199 (957)
Q Consensus 184 ~~l~~L~~L~L~~n~l 199 (957)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4455555555555544
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.02 E-value=0.0064 Score=69.33 Aligned_cols=84 Identities=26% Similarity=0.267 Sum_probs=43.7
Q ss_pred CcEEECCCCccCccCchhhhh---cCCCCCEEEccCCcCCCCcc----hhccCC-CCCCEEEccCCcCCCC----Cchhh
Q 002167 140 LTLLDLCSCNFTGSIPPSLGN---NITQLAYLDLSINSFIGHIP----SSFSNL-HQLRHLDLQSNNFVGK----IPASL 207 (957)
Q Consensus 140 L~~L~Ls~n~l~~~ip~~l~~---~l~~L~~L~Ls~n~l~~~~p----~~l~~l-~~L~~L~L~~n~l~~~----~p~~l 207 (957)
+..|.|.+|.+.......++. ...+|..|++++|.+.+.-- ..+... ..|++|++..|.+++. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 777888888777544433332 25567777777777653211 111221 3455556655555432 22333
Q ss_pred hhCCCCCcEEEccCCCC
Q 002167 208 GNNITQLAYLDLSSNSF 224 (957)
Q Consensus 208 ~~~l~~L~~L~Ls~n~l 224 (957)
. ....++.++++.|.+
T Consensus 169 ~-~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 E-KNEHLTELDLSLNGL 184 (478)
T ss_pred h-cccchhHHHHHhccc
Confidence 3 245555555555554
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.81 E-value=0.22 Score=27.69 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=4.6
Q ss_pred CCcEEECCCCccC
Q 002167 139 SLTLLDLCSCNFT 151 (957)
Q Consensus 139 ~L~~L~Ls~n~l~ 151 (957)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.40 E-value=0.047 Score=53.95 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=71.8
Q ss_pred cccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEE
Q 002167 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 836 (957)
Q Consensus 757 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ 836 (957)
....+.||++.|++.. .-..|.-++.|..||+|.|++. ..|..++++..+..+++..|..+ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 3567889999998863 3456777888999999999988 67888999999999999888887 6889999999999999
Q ss_pred CccCccc
Q 002167 837 LSNNQLE 843 (957)
Q Consensus 837 ls~N~l~ 843 (957)
+-.|+|.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999865
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.09 E-value=0.72 Score=28.87 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=11.7
Q ss_pred CCCcEEECCCCccCccCchhhh
Q 002167 138 PSLTLLDLCSCNFTGSIPPSLG 159 (957)
Q Consensus 138 ~~L~~L~Ls~n~l~~~ip~~l~ 159 (957)
++|++|+|++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666655 5555443
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.09 E-value=0.72 Score=28.87 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=11.7
Q ss_pred CCCcEEECCCCccCccCchhhh
Q 002167 138 PSLTLLDLCSCNFTGSIPPSLG 159 (957)
Q Consensus 138 ~~L~~L~Ls~n~l~~~ip~~l~ 159 (957)
++|++|+|++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666655 5555443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.45 E-value=0.03 Score=55.29 Aligned_cols=88 Identities=16% Similarity=0.213 Sum_probs=53.1
Q ss_pred CccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCC
Q 002167 107 SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL 186 (957)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 186 (957)
.+..++..++||++.|.+.. +-..+ +.++.|..||++.|.+. .+|.++.+ +..++.+++..|..+ ..|.++...
T Consensus 37 ei~~~kr~tvld~~s~r~vn--~~~n~-s~~t~~~rl~~sknq~~-~~~~d~~q-~~e~~~~~~~~n~~~-~~p~s~~k~ 110 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN--LGKNF-SILTRLVRLDLSKNQIK-FLPKDAKQ-QRETVNAASHKNNHS-QQPKSQKKE 110 (326)
T ss_pred hhhccceeeeehhhhhHHHh--hccch-HHHHHHHHHhccHhhHh-hChhhHHH-HHHHHHHHhhccchh-hCCcccccc
Confidence 44555666666666665432 12223 45566666777777666 66666666 666666666666554 456666666
Q ss_pred CCCCEEEccCCcCC
Q 002167 187 HQLRHLDLQSNNFV 200 (957)
Q Consensus 187 ~~L~~L~L~~n~l~ 200 (957)
++++++++.++.+.
T Consensus 111 ~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFF 124 (326)
T ss_pred CCcchhhhccCcch
Confidence 66666666666543
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.16 E-value=0.28 Score=30.06 Aligned_cols=13 Identities=38% Similarity=0.764 Sum_probs=4.7
Q ss_pred CCcEEECCCCcCC
Q 002167 783 SLKSLNISHNNLT 795 (957)
Q Consensus 783 ~L~~L~Ls~N~l~ 795 (957)
+|+.|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444444
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.12 E-value=0.9 Score=28.40 Aligned_cols=14 Identities=50% Similarity=0.757 Sum_probs=6.5
Q ss_pred cCCCEEECCCCccc
Q 002167 806 TELESLDLSSNKLA 819 (957)
Q Consensus 806 ~~L~~L~Ls~N~l~ 819 (957)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444444444444
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.12 E-value=0.9 Score=28.40 Aligned_cols=14 Identities=50% Similarity=0.757 Sum_probs=6.5
Q ss_pred cCCCEEECCCCccc
Q 002167 806 TELESLDLSSNKLA 819 (957)
Q Consensus 806 ~~L~~L~Ls~N~l~ 819 (957)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34444444444444
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.05 E-value=0.16 Score=49.39 Aligned_cols=81 Identities=19% Similarity=0.074 Sum_probs=46.2
Q ss_pred CCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCcccccc-Cccc--cCCcccEEECCCCc-CCCCCccccccCCCccE
Q 002167 545 CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQI-PECL--GNSTLQVLDMRMNN-FSGSLPQTFAKSCVLVS 620 (957)
Q Consensus 545 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~~--~~~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~ 620 (957)
..++.++-++..|..+--+.+.++++++.|.+.+|.--+.- -+.+ ..++|+.|+|++|. |+..--..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 45667777777766655566667777777777776432110 0001 12667777777663 55444445555666666
Q ss_pred EEccC
Q 002167 621 LNLNG 625 (957)
Q Consensus 621 L~Ls~ 625 (957)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 65544
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.30 E-value=0.72 Score=28.22 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=7.6
Q ss_pred CCCcEEECCCCccCcc
Q 002167 138 PSLTLLDLCSCNFTGS 153 (957)
Q Consensus 138 ~~L~~L~Ls~n~l~~~ 153 (957)
++|++|+|++|.+++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 4555556665555543
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.31 E-value=0.65 Score=45.39 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=14.9
Q ss_pred CcEEEeccCcCcccCCccccccCcCceeeccCC
Q 002167 287 LLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYN 319 (957)
Q Consensus 287 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 319 (957)
++.++-+++.+....-+.+.+++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 444555554444333333444444444444444
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.61 E-value=4.6 Score=25.36 Aligned_cols=14 Identities=64% Similarity=0.850 Sum_probs=8.9
Q ss_pred cCCCEEECCCCccc
Q 002167 806 TELESLDLSSNKLA 819 (957)
Q Consensus 806 ~~L~~L~Ls~N~l~ 819 (957)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=65.15 E-value=16 Score=40.65 Aligned_cols=63 Identities=27% Similarity=0.239 Sum_probs=31.6
Q ss_pred CCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCC------CCccceeeccCccCCCCCCC
Q 002167 405 QHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLP------WKNLEYLHLDSNSLQGSLPD 471 (957)
Q Consensus 405 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~------~~~L~~L~l~~n~l~~~~~~ 471 (957)
.+.+++++++.|.+....|-.+.....+ +.++.|.++.-.... -..+.+++++.|.....+|.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~ 232 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPR 232 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchh
Confidence 4556777777777776666554433222 334444433321111 12345566666655555543
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=64.02 E-value=15 Score=40.86 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=16.6
Q ss_pred ceEEEcccCccCccCc---ccccccCCCcEEECCCCcCC
Q 002167 760 FATIDLSSNRFQRKIP---EVVGKLNSLKSLNISHNNLT 795 (957)
Q Consensus 760 L~~L~Ls~N~l~~~ip---~~l~~l~~L~~L~Ls~N~l~ 795 (957)
++.+.++.|.+....- ..++.-+.++.|++++|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 4455566555543211 11222345555666666543
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=54.75 E-value=9.5 Score=24.36 Aligned_cols=13 Identities=62% Similarity=0.823 Sum_probs=7.2
Q ss_pred CCCEEECCCCccc
Q 002167 807 ELESLDLSSNKLA 819 (957)
Q Consensus 807 ~L~~L~Ls~N~l~ 819 (957)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 91
>PF15179 Myc_target_1: Myc target protein 1
Probab=54.23 E-value=6.1 Score=37.55 Aligned_cols=26 Identities=35% Similarity=0.753 Sum_probs=13.2
Q ss_pred chhhhhhhcceeehhhHHHHHHHHHH
Q 002167 899 FDWKLAKLGYASGVVIGLSIGYMAFV 924 (957)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (957)
|+|.-++++|.+.+++|++++.++|.
T Consensus 16 f~~~~lIlaF~vSm~iGLviG~li~~ 41 (197)
T PF15179_consen 16 FDWEDLILAFCVSMAIGLVIGALIWA 41 (197)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555544
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=44.42 E-value=15 Score=23.05 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=9.8
Q ss_pred CCcEEECCCCccCccCch
Q 002167 139 SLTLLDLCSCNFTGSIPP 156 (957)
Q Consensus 139 ~L~~L~Ls~n~l~~~ip~ 156 (957)
+|++|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666665 4543
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.65 E-value=17 Score=49.71 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=21.2
Q ss_pred ECCCCcCCCCCchhhhhccCCCEEECCCCccc
Q 002167 788 NISHNNLTGCIPSSLRNLTELESLDLSSNKLA 819 (957)
Q Consensus 788 ~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~ 819 (957)
||++|+|+..-+..|..|++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46677777666666666666777777766664
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.22 E-value=22 Score=40.57 Aligned_cols=83 Identities=24% Similarity=0.283 Sum_probs=50.4
Q ss_pred cCCCCCcEEECCCCccCccCc--hhhhhcCCCCCEEEccCCcCCCCcchhccC--CCCCCEEEccCCcCCCCCc------
Q 002167 135 DQFPSLTLLDLCSCNFTGSIP--PSLGNNITQLAYLDLSINSFIGHIPSSFSN--LHQLRHLDLQSNNFVGKIP------ 204 (957)
Q Consensus 135 ~~l~~L~~L~Ls~n~l~~~ip--~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p------ 204 (957)
.+.+.+..++|++|++. .+. .++...-++|..|+|++|...-.....+.+ ...|++|-+.+|.+....-
T Consensus 215 ~n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv 293 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV 293 (585)
T ss_pred cCCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence 56677788888888776 332 234444678889999988221111122332 3467889999998754322
Q ss_pred hhhhhCCCCCcEEE
Q 002167 205 ASLGNNITQLAYLD 218 (957)
Q Consensus 205 ~~l~~~l~~L~~L~ 218 (957)
..+.+..|+|..||
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 12333567887775
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.84 E-value=26 Score=39.97 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=18.0
Q ss_pred cccccccccccccCCCc---ChhhhcCCCCCEEECcCC
Q 002167 382 FPNLSALDLSACNISEF---PDNLRTQHQLELLDLSEN 416 (957)
Q Consensus 382 l~~L~~L~L~~~~l~~l---p~~l~~~~~L~~L~Ls~n 416 (957)
+|.+..+.|++|++..+ ..-....|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44555555555544322 222344566666666666
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.55 E-value=51 Score=45.46 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=29.4
Q ss_pred EcccCccCccCcccccccCCCcEEECCCCcCC
Q 002167 764 DLSSNRFQRKIPEVVGKLNSLKSLNISHNNLT 795 (957)
Q Consensus 764 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 795 (957)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999888889999999999999999876
No 97
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=22.50 E-value=59 Score=20.13 Aligned_cols=12 Identities=50% Similarity=0.963 Sum_probs=6.9
Q ss_pred CCCcEEECCCCc
Q 002167 138 PSLTLLDLCSCN 149 (957)
Q Consensus 138 ~~L~~L~Ls~n~ 149 (957)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455666666653
Done!