Query 002167
Match_columns 957
No_of_seqs 884 out of 5770
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 15:13:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.1E-91 7.1E-96 860.2 48.5 712 24-879 5-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 3E-72 1E-76 690.0 39.9 633 88-845 79-743 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4E-58 1.4E-62 559.8 50.2 606 142-855 8-634 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 7.7E-56 2.6E-60 539.7 53.7 598 91-823 9-626 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-54 1.1E-58 535.4 38.6 573 141-879 7-592 (844)
6 3t6q_A CD180 antigen; protein- 100.0 2.5E-53 8.5E-58 510.5 40.3 542 116-849 16-566 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 8.3E-53 2.8E-57 506.0 40.5 540 115-849 14-564 (606)
8 3t6q_A CD180 antigen; protein- 100.0 7.4E-51 2.5E-55 489.0 48.2 537 91-823 17-564 (606)
9 4eco_A Uncharacterized protein 100.0 1.5E-53 5.3E-58 511.6 22.8 499 29-655 28-602 (636)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-50 4.1E-55 503.3 35.7 294 521-871 266-565 (844)
11 3vq2_A TLR4, TOLL-like recepto 100.0 8E-50 2.7E-54 480.0 38.0 527 90-708 15-563 (606)
12 4ecn_A Leucine-rich repeat pro 100.0 1.1E-50 3.8E-55 493.2 30.3 513 26-628 264-863 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 1.6E-47 5.4E-52 456.8 36.0 275 476-850 259-538 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3.2E-46 1.1E-50 443.1 31.5 483 138-852 26-519 (549)
15 2z63_A TOLL-like receptor 4, v 100.0 2.9E-45 1E-49 437.2 35.9 495 112-682 28-536 (570)
16 4eco_A Uncharacterized protein 100.0 2.6E-45 9E-50 440.1 23.6 357 392-844 192-601 (636)
17 4ecn_A Leucine-rich repeat pro 100.0 2.5E-43 8.7E-48 428.7 28.3 388 222-676 435-863 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 6.1E-43 2.1E-47 411.8 28.2 462 115-708 3-486 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-42 3.9E-47 409.5 30.5 445 141-717 3-470 (520)
20 4g8a_A TOLL-like receptor 4; l 100.0 7.3E-42 2.5E-46 413.6 37.9 531 117-707 36-584 (635)
21 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-42 5.8E-47 411.2 30.3 489 73-657 3-514 (549)
22 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-41 1.2E-45 407.8 39.7 536 168-848 36-585 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.6E-40 2.9E-44 388.2 31.1 467 138-709 31-516 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.9E-40 3E-44 388.0 28.6 196 111-320 30-232 (562)
25 1ogq_A PGIP-2, polygalacturona 100.0 2.7E-40 9.3E-45 360.9 18.3 293 27-344 2-302 (313)
26 1jl5_A Outer protein YOPM; leu 100.0 1.3E-39 4.6E-44 373.2 24.6 284 474-850 131-418 (454)
27 1jl5_A Outer protein YOPM; leu 100.0 4.6E-38 1.6E-42 360.5 27.0 372 382-849 10-394 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 9.4E-38 3.2E-42 361.2 24.9 379 387-855 14-420 (455)
29 3v47_A TOLL-like receptor 5B a 100.0 5.1E-37 1.7E-41 355.0 29.6 176 141-322 13-193 (455)
30 2id5_A Lingo-1, leucine rich r 100.0 6.9E-35 2.3E-39 339.1 24.9 329 473-870 31-360 (477)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.9E-34 6.5E-39 330.7 26.5 355 402-849 38-393 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 7.7E-34 2.6E-38 325.7 27.6 129 476-636 266-394 (457)
33 1o6v_A Internalin A; bacterial 100.0 2.5E-33 8.5E-38 324.3 32.0 283 494-845 108-390 (466)
34 1o6v_A Internalin A; bacterial 100.0 8.7E-33 3E-37 319.8 31.2 261 494-821 130-390 (466)
35 1ogq_A PGIP-2, polygalacturona 100.0 3E-33 1E-37 305.2 16.7 259 545-875 50-312 (313)
36 3o6n_A APL1; leucine-rich repe 100.0 2E-31 6.7E-36 301.2 29.6 349 63-465 2-351 (390)
37 3oja_B Anopheles plasmodium-re 100.0 6.5E-32 2.2E-36 322.1 26.8 332 474-870 51-384 (597)
38 2id5_A Lingo-1, leucine rich r 100.0 5E-32 1.7E-36 314.9 23.2 321 501-869 14-336 (477)
39 3o6n_A APL1; leucine-rich repe 100.0 2.1E-31 7.1E-36 301.0 26.3 331 474-869 45-377 (390)
40 4fcg_A Uncharacterized protein 100.0 2.5E-32 8.5E-37 299.7 15.7 275 24-346 20-314 (328)
41 3oja_B Anopheles plasmodium-re 100.0 1.5E-30 5E-35 310.4 31.3 346 63-465 8-357 (597)
42 4fmz_A Internalin; leucine ric 100.0 3.9E-30 1.3E-34 285.9 29.5 303 474-843 44-346 (347)
43 4fmz_A Internalin; leucine ric 100.0 4.3E-29 1.5E-33 277.5 30.5 237 107-368 39-275 (347)
44 2ft3_A Biglycan; proteoglycan, 100.0 5.2E-29 1.8E-33 274.7 24.7 288 499-841 34-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 1.4E-28 4.8E-33 271.0 26.6 197 499-704 32-230 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 7.1E-32 2.4E-36 312.5 -2.7 392 138-608 3-443 (461)
47 1z7x_W Ribonuclease inhibitor; 100.0 5.5E-32 1.9E-36 313.4 -7.6 388 189-658 5-445 (461)
48 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-27 5.2E-32 262.9 25.9 222 473-703 53-277 (332)
49 1xku_A Decorin; proteoglycan, 100.0 4.7E-27 1.6E-31 258.8 28.2 196 473-674 51-250 (330)
50 2z80_A TOLL-like receptor 2, v 99.9 3.3E-27 1.1E-31 262.6 20.6 257 546-849 53-320 (353)
51 3ogk_B Coronatine-insensitive 99.9 2.8E-29 9.6E-34 300.4 0.7 443 72-584 40-528 (592)
52 4fcg_A Uncharacterized protein 99.9 1.6E-26 5.6E-31 253.4 19.3 226 136-370 79-313 (328)
53 2z66_A Variable lymphocyte rec 99.9 3.5E-26 1.2E-30 249.0 21.6 233 545-847 28-265 (306)
54 2z80_A TOLL-like receptor 2, v 99.9 3.6E-27 1.2E-31 262.3 13.4 282 496-823 29-318 (353)
55 3zyi_A Leucine-rich repeat-con 99.9 9.9E-26 3.4E-30 259.5 24.8 252 524-848 57-308 (452)
56 2z66_A Variable lymphocyte rec 99.9 4.5E-26 1.5E-30 248.1 20.3 256 74-351 7-266 (306)
57 1wwl_A Monocyte differentiatio 99.9 3.3E-28 1.1E-32 265.3 2.6 249 522-845 44-311 (312)
58 3zyj_A Leucine-rich repeat-con 99.9 1.7E-25 5.8E-30 256.6 24.3 252 523-847 45-296 (440)
59 3ogk_B Coronatine-insensitive 99.9 6.5E-29 2.2E-33 297.3 -5.1 187 210-420 110-307 (592)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-25 3.9E-30 242.2 15.5 228 548-848 14-243 (285)
61 1wwl_A Monocyte differentiatio 99.9 1.8E-27 6E-32 259.6 1.3 247 110-371 41-309 (312)
62 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-24 4.8E-29 255.8 25.9 172 476-676 42-213 (622)
63 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-24 1.1E-28 253.0 27.5 263 498-848 40-302 (622)
64 3o53_A Protein LRIM1, AGAP0063 99.9 4.9E-27 1.7E-31 256.7 3.0 247 543-848 32-281 (317)
65 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-24 8.8E-29 231.5 20.9 224 89-322 14-238 (285)
66 3zyi_A Leucine-rich repeat-con 99.9 5.7E-24 1.9E-28 244.8 24.1 227 138-369 75-301 (452)
67 2p1m_B Transport inhibitor res 99.9 6.6E-27 2.3E-31 280.0 -0.8 205 162-368 104-324 (594)
68 3oja_A Leucine-rich immune mol 99.9 1.5E-25 5E-30 259.4 9.8 235 546-838 35-270 (487)
69 3o53_A Protein LRIM1, AGAP0063 99.9 6.5E-26 2.2E-30 247.8 5.1 245 522-825 35-282 (317)
70 3zyj_A Leucine-rich repeat-con 99.9 1.2E-23 4.2E-28 241.1 24.1 229 112-347 64-293 (440)
71 2o6q_A Variable lymphocyte rec 99.9 2.8E-23 9.7E-28 221.3 21.6 217 71-322 2-218 (270)
72 2p1m_B Transport inhibitor res 99.9 1.5E-26 5.3E-31 276.8 -4.6 133 210-342 103-244 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 3.1E-23 1.1E-27 222.0 19.6 212 593-851 29-245 (276)
74 3oja_A Leucine-rich immune mol 99.9 6.4E-24 2.2E-28 245.6 13.8 222 567-847 32-255 (487)
75 2o6q_A Variable lymphocyte rec 99.9 7.2E-22 2.5E-26 210.4 23.1 207 571-849 18-224 (270)
76 4glp_A Monocyte differentiatio 99.9 3.5E-23 1.2E-27 225.4 9.7 205 594-844 93-308 (310)
77 3rfs_A Internalin B, repeat mo 99.9 1.9E-22 6.4E-27 215.1 13.9 203 567-849 39-241 (272)
78 2z62_A TOLL-like receptor 4, v 99.9 1.3E-21 4.4E-26 209.3 20.0 211 472-707 26-241 (276)
79 1p9a_G Platelet glycoprotein I 99.9 3E-21 1E-25 207.4 20.6 206 565-846 6-211 (290)
80 3rfs_A Internalin B, repeat mo 99.9 1.9E-21 6.3E-26 207.4 18.2 212 107-334 36-247 (272)
81 2ast_B S-phase kinase-associat 99.9 9E-23 3.1E-27 225.3 7.1 263 71-350 34-310 (336)
82 3goz_A Leucine-rich repeat-con 99.9 6.6E-23 2.3E-27 228.4 5.1 260 526-845 3-299 (362)
83 3goz_A Leucine-rich repeat-con 99.9 5.8E-23 2E-27 228.9 4.1 175 502-676 2-208 (362)
84 1p9a_G Platelet glycoprotein I 99.9 9.2E-21 3.2E-25 203.5 20.7 202 135-346 7-208 (290)
85 3m19_A Variable lymphocyte rec 99.8 7.7E-21 2.6E-25 200.0 17.1 121 757-878 106-232 (251)
86 2ast_B S-phase kinase-associat 99.8 2.2E-22 7.7E-27 222.1 5.0 250 547-849 49-312 (336)
87 2ca6_A RAN GTPase-activating p 99.8 1.6E-22 5.4E-27 227.8 2.4 196 613-847 91-320 (386)
88 4glp_A Monocyte differentiatio 99.8 3.8E-20 1.3E-24 201.3 17.1 225 137-370 63-306 (310)
89 2xwt_C Thyrotropin receptor; s 99.8 3.9E-20 1.3E-24 193.2 14.4 197 592-840 31-236 (239)
90 2ca6_A RAN GTPase-activating p 99.8 2.8E-21 9.6E-26 217.5 6.0 238 107-346 27-316 (386)
91 1h6u_A Internalin H; cell adhe 99.8 1.2E-19 4E-24 196.9 18.5 195 565-844 37-231 (308)
92 3m19_A Variable lymphocyte rec 99.8 4E-19 1.4E-23 186.9 19.7 175 499-675 15-190 (251)
93 1h6u_A Internalin H; cell adhe 99.8 2.2E-19 7.6E-24 194.8 18.2 194 108-322 37-230 (308)
94 2xwt_C Thyrotropin receptor; s 99.8 2.6E-19 9E-24 186.8 16.0 183 469-654 26-219 (239)
95 3cvr_A Invasion plasmid antige 99.8 5.9E-20 2E-24 213.7 11.4 209 63-308 32-253 (571)
96 3cvr_A Invasion plasmid antige 99.8 3E-19 1E-23 207.7 16.5 188 570-830 60-254 (571)
97 2o6s_A Variable lymphocyte rec 99.8 5.7E-19 1.9E-23 180.0 16.1 183 74-285 7-189 (208)
98 4ay9_X Follicle-stimulating ho 99.8 3.7E-19 1.3E-23 197.0 13.5 244 74-343 9-256 (350)
99 4ay9_X Follicle-stimulating ho 99.8 3.6E-18 1.2E-22 189.0 18.1 243 524-842 12-258 (350)
100 2o6s_A Variable lymphocyte rec 99.8 4.9E-18 1.7E-22 173.0 16.0 161 164-333 29-189 (208)
101 3e6j_A Variable lymphocyte rec 99.7 2.5E-17 8.7E-22 170.2 18.8 168 63-252 8-175 (229)
102 4b8c_D Glucose-repressible alc 99.7 4.5E-19 1.5E-23 214.4 5.0 233 28-295 129-369 (727)
103 2v70_A SLIT-2, SLIT homolog 2 99.7 4.8E-18 1.6E-22 174.4 11.9 93 757-849 80-172 (220)
104 2v9t_B SLIT homolog 2 protein 99.7 4.2E-17 1.4E-21 167.3 15.3 90 758-847 80-169 (220)
105 1h6t_A Internalin B; cell adhe 99.7 8.9E-17 3E-21 172.6 17.4 172 108-298 42-213 (291)
106 1h6t_A Internalin B; cell adhe 99.7 6.2E-17 2.1E-21 173.8 15.7 189 114-323 26-214 (291)
107 1m9s_A Internalin B; cell inva 99.7 3.6E-16 1.2E-20 184.1 19.7 176 107-301 38-213 (605)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 3.1E-16 1.1E-20 160.8 16.2 152 90-249 15-166 (220)
109 1m9s_A Internalin B; cell inva 99.7 2E-16 6.8E-21 186.2 16.4 192 112-324 21-212 (605)
110 3e6j_A Variable lymphocyte rec 99.7 5.1E-16 1.8E-20 160.3 17.3 153 140-299 21-173 (229)
111 2v9t_B SLIT homolog 2 protein 99.7 3.7E-16 1.3E-20 160.2 15.8 150 501-675 14-163 (220)
112 2xot_A Amphoterin-induced prot 99.7 1.9E-16 6.5E-21 175.9 14.5 174 501-676 21-201 (361)
113 2xot_A Amphoterin-induced prot 99.7 1.6E-16 5.4E-21 176.5 13.0 128 115-249 21-149 (361)
114 1w8a_A SLIT protein; signaling 99.7 6.7E-17 2.3E-21 162.0 8.2 113 757-870 53-166 (192)
115 1xeu_A Internalin C; cellular 99.7 2.6E-16 8.7E-21 166.2 12.5 169 592-845 19-187 (263)
116 1xeu_A Internalin C; cellular 99.7 9.1E-17 3.1E-21 169.7 8.8 171 110-300 17-187 (263)
117 1dce_A Protein (RAB geranylger 99.7 2.9E-18 9.8E-23 200.8 -3.0 182 135-325 346-549 (567)
118 4ezg_A Putative uncharacterize 99.7 2.9E-16 9.9E-21 158.2 11.2 152 162-322 43-194 (197)
119 4ezg_A Putative uncharacterize 99.6 9.1E-16 3.1E-20 154.6 13.8 154 135-298 41-194 (197)
120 1dce_A Protein (RAB geranylger 99.6 1.9E-18 6.4E-23 202.4 -8.3 215 380-670 346-566 (567)
121 4b8c_D Glucose-repressible alc 99.6 2.9E-16 9.9E-21 189.8 6.3 142 536-681 215-358 (727)
122 1w8a_A SLIT protein; signaling 99.6 1.2E-14 4.2E-19 145.4 11.6 113 139-253 30-143 (192)
123 2ell_A Acidic leucine-rich nuc 99.5 2.6E-14 8.9E-19 139.8 13.1 134 136-274 22-160 (168)
124 2je0_A Acidic leucine-rich nuc 99.5 3.5E-14 1.2E-18 135.8 11.0 128 137-269 16-148 (149)
125 2ell_A Acidic leucine-rich nuc 99.5 6.4E-14 2.2E-18 137.0 12.1 132 187-322 24-160 (168)
126 2je0_A Acidic leucine-rich nuc 99.5 2.8E-14 9.7E-19 136.5 8.9 126 545-672 17-148 (149)
127 3sb4_A Hypothetical leucine ri 99.5 3.9E-14 1.3E-18 155.1 11.1 194 162-363 100-326 (329)
128 2wfh_A SLIT homolog 2 protein 99.5 4.4E-13 1.5E-17 134.0 14.9 109 138-249 31-139 (193)
129 3g39_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 134.8 10.1 93 758-850 30-122 (170)
130 2o6r_A Variable lymphocyte rec 99.4 6.6E-13 2.3E-17 131.0 14.0 129 115-250 10-138 (177)
131 2wfh_A SLIT homolog 2 protein 99.4 9.3E-13 3.2E-17 131.6 14.7 109 237-347 32-140 (193)
132 2o6r_A Variable lymphocyte rec 99.4 1.5E-12 5.2E-17 128.3 14.8 113 545-657 28-141 (177)
133 2r9u_A Variable lymphocyte rec 99.4 4.9E-13 1.7E-17 131.1 10.1 91 758-848 33-123 (174)
134 1a9n_A U2A', U2A'; complex (nu 99.4 6.3E-13 2.1E-17 131.0 10.7 132 135-274 16-153 (176)
135 3sb4_A Hypothetical leucine ri 99.4 4.3E-13 1.5E-17 146.8 9.7 44 474-518 101-144 (329)
136 4fdw_A Leucine rich hypothetic 99.4 1.2E-11 4.2E-16 138.2 21.0 241 110-369 111-356 (401)
137 1ds9_A Outer arm dynein; leuci 99.4 8.1E-15 2.8E-19 147.7 -5.7 85 157-248 43-127 (198)
138 4fdw_A Leucine rich hypothetic 99.4 1E-11 3.4E-16 138.8 18.1 246 107-370 131-382 (401)
139 1a9n_A U2A', U2A'; complex (nu 99.4 1.7E-12 5.8E-17 127.9 10.4 130 542-676 16-152 (176)
140 1ds9_A Outer arm dynein; leuci 99.3 2E-14 6.8E-19 144.8 -4.5 134 162-302 17-157 (198)
141 3g39_A Variable lymphocyte rec 99.3 1.8E-11 6.2E-16 119.5 12.0 102 572-675 12-113 (170)
142 4fs7_A Uncharacterized protein 99.3 1.1E-10 3.8E-15 131.0 19.3 62 180-244 64-125 (394)
143 2r9u_A Variable lymphocyte rec 99.2 3.6E-11 1.2E-15 117.7 12.0 103 572-676 15-117 (174)
144 4fs7_A Uncharacterized protein 99.2 3.6E-10 1.2E-14 126.8 18.5 158 153-319 61-218 (394)
145 3un9_A NLR family member X1; l 99.2 1.8E-12 6E-17 143.6 -1.2 137 112-249 72-224 (372)
146 3un9_A NLR family member X1; l 99.2 1.4E-12 4.7E-17 144.4 -2.4 63 260-322 182-252 (372)
147 2ifg_A High affinity nerve gro 99.1 6.6E-11 2.2E-15 130.5 9.1 90 757-847 30-120 (347)
148 2ifg_A High affinity nerve gro 99.0 1.7E-09 5.8E-14 119.2 11.2 102 143-249 13-116 (347)
149 4gt6_A Cell surface protein; l 98.9 6.5E-08 2.2E-12 108.3 22.9 108 539-650 259-367 (394)
150 4gt6_A Cell surface protein; l 98.9 8.5E-08 2.9E-12 107.4 23.2 132 491-652 258-390 (394)
151 2ra8_A Uncharacterized protein 98.8 7.9E-09 2.7E-13 113.1 8.4 142 154-299 164-321 (362)
152 2ra8_A Uncharacterized protein 98.8 2.2E-09 7.6E-14 117.5 3.3 203 86-296 107-341 (362)
153 4h09_A Hypothetical leucine ri 98.6 3.4E-06 1.2E-10 93.7 21.6 107 539-648 234-341 (379)
154 4h09_A Hypothetical leucine ri 98.4 1.2E-05 4E-10 89.4 22.0 99 540-641 258-357 (379)
155 3rw6_A Nuclear RNA export fact 98.3 1.8E-07 6.1E-12 96.8 3.7 84 763-848 148-238 (267)
156 3rw6_A Nuclear RNA export fact 98.3 4.3E-07 1.5E-11 94.0 6.1 80 755-836 167-257 (267)
157 1io0_A Tropomodulin; LRR prote 98.3 2.8E-07 9.6E-12 90.8 3.3 86 758-843 65-164 (185)
158 1io0_A Tropomodulin; LRR prote 98.1 1.1E-06 3.8E-11 86.5 3.7 17 135-151 33-50 (185)
159 3e4g_A ATP synthase subunit S, 97.8 9.3E-06 3.2E-10 77.7 3.0 83 164-247 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.7 1.2E-05 4E-10 77.0 2.3 84 758-841 61-150 (176)
161 3rfe_A Platelet glycoprotein I 96.7 0.0018 6.3E-08 58.9 5.7 60 786-847 12-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00036 1.2E-08 68.0 0.5 61 545-605 41-111 (197)
163 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00096 3.3E-08 65.0 2.7 86 565-650 37-136 (197)
164 3rfe_A Platelet glycoprotein I 96.5 0.004 1.4E-07 56.6 6.5 57 761-819 11-68 (130)
165 2lz0_A Uncharacterized protein 25.4 96 0.0033 25.8 5.1 46 533-579 8-53 (100)
166 2lz0_A Uncharacterized protein 21.4 1.8E+02 0.0061 24.1 6.0 42 276-318 11-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-91 Score=860.24 Aligned_cols=712 Identities=32% Similarity=0.491 Sum_probs=536.1
Q ss_pred cCCCCCHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCccc--
Q 002167 24 SAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGN-- 101 (957)
Q Consensus 24 ~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~-- 101 (957)
+++.+.++|++||++||+++.++. ++++|+.+++||.|+||+|+ .++|++|+|+++++.|.
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~---------------~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~ 67 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN---------------LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFS 67 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT---------------SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHH
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc---------------cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccC
Confidence 445567899999999999997542 58899988899999999998 58999999999999998
Q ss_pred -cCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCch--hhhhcCCCCCEEEccCCcCCCC
Q 002167 102 -IPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPP--SLGNNITQLAYLDLSINSFIGH 178 (957)
Q Consensus 102 -~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~--~l~~~l~~L~~L~Ls~n~l~~~ 178 (957)
+++ ++..+++|+.++++.+.+.. +|+.+ +.+++|++|+|++|.+.|.+|. .++. +++|++|+|++|.+.+.
T Consensus 68 ~l~~--~l~~L~~L~~l~~~~~~~~~--l~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~ 141 (768)
T 3rgz_A 68 AVSS--SLLSLTGLESLFLSNSHING--SVSGF-KCSASLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFP 141 (768)
T ss_dssp HHHH--HTTTCTTCCEEECTTSCEEE--CCCCC-CCCTTCCEEECCSSEEEEEGGGGGGGGG-CTTCCEEECCSSEEECC
T ss_pred ccCh--hHhccCcccccCCcCCCcCC--Cchhh-ccCCCCCEEECCCCcCCCcCCChHHHhC-CCCCCEEECcCCccCCc
Confidence 877 88999999999999987743 55666 9999999999999999999998 8887 99999999999999988
Q ss_pred cchhc-cCCCCCCEEEccCCcCCCCCchhh--hhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchh
Q 002167 179 IPSSF-SNLHQLRHLDLQSNNFVGKIPASL--GNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS 255 (957)
Q Consensus 179 ~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l--~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~ 255 (957)
+|..+ .++++|++|++++|.+++..|..+ ..++++|++|++++|.+++..|. .++++|++|++++|++++.+|.
T Consensus 142 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~- 218 (768)
T 3rgz_A 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF- 218 (768)
T ss_dssp SSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-
T ss_pred CCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-
Confidence 88766 899999999999999998877762 23899999999999999876653 8899999999999999987877
Q ss_pred HhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcc-cC
Q 002167 256 LGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFEL-LN 334 (957)
Q Consensus 256 l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~ 334 (957)
+.. +++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++
T Consensus 219 l~~-l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~ 295 (768)
T 3rgz_A 219 LGD-CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDT 295 (768)
T ss_dssp CTT-CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTT
T ss_pred ccc-CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCc
Confidence 655 999999999999999999999999999999999999999887765 88999999999999998899888775 88
Q ss_pred CceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChh-hhcCCCCCEEEC
Q 002167 335 LTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDN-LRTQHQLELLDL 413 (957)
Q Consensus 335 L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~-l~~~~~L~~L~L 413 (957)
|++|++++|.+.+.++. .+..+++|++|++++|.+. +.+|.. +..+++|++|++
T Consensus 296 L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~------------------------~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 296 LTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFS------------------------GELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp CSEEECCSSEEEECCCG-GGGGCTTCCEEECCSSEEE------------------------EECCHHHHTTCTTCCEEEC
T ss_pred CCEEECcCCcCCCccch-HHhcCCCccEEECCCCccc------------------------CcCCHHHHhcCCCCCEEeC
Confidence 99999998888754432 3455555666555555421 255654 677777777777
Q ss_pred cCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCcc
Q 002167 414 SENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSS 493 (957)
Q Consensus 414 s~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 493 (957)
++|.+++.+|..+... + ++|+.|++++|.+++.+|..
T Consensus 351 s~n~l~~~~p~~l~~l--~-----------------------------------------~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 351 SFNEFSGELPESLTNL--S-----------------------------------------ASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp CSSEEEECCCTTHHHH--T-----------------------------------------TTCSEEECCSSEEEEECCTT
T ss_pred cCCccCccccHHHHhh--h-----------------------------------------cCCcEEEccCCCcCCCcChh
Confidence 7777777777766554 2 13334444444444444444
Q ss_pred ccC--CCCCCEEEcccCcCccCCCcccccc-ccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCC
Q 002167 494 FCN--LSSIQYLDLSNNSLSGQIPQCLGNS-TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVK 570 (957)
Q Consensus 494 l~~--l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 570 (957)
+.. +++|++|++++|.+++.+|..+... +|++|++++|++++.+|..+..+++|++|++++|++++.+|..+..+++
T Consensus 388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 333 4455555555555555555444332 5555555555555555555555566666666666666666666666666
Q ss_pred CCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCC
Q 002167 571 LQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGN 649 (957)
Q Consensus 571 L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~ 649 (957)
|++|++++|++++.+|..+.. ++|++|++++|++++.+|.+++.+++|+.|+|++|++++.+|..+.++++|+.|++++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 666666666666666665554 6666666666666666666666666666666666666666666666666666666666
Q ss_pred CccccCccccccccccccEEEccccc---------c-------------cccCCCCCCccCCCCceEEEcCCCcCcCCCc
Q 002167 650 NQIDDTFPYWLDVLLELQVLILRSNR---------F-------------WGPIGDTKTRVPFPKLRIMDCSHNQLTGVLP 707 (957)
Q Consensus 650 n~l~~~~p~~l~~l~~L~~L~L~~n~---------~-------------~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip 707 (957)
|++++.+|.++.....+..+.+..+. . .+..+.. ...++.+..++++.|.+.|.+|
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ--LNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG--GGGGGGTCCSCTTSCEEEEECC
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchh--hhccccccccccccceecccCc
Confidence 66666666665555444333322211 0 0000000 0111222233333344433333
Q ss_pred hHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEE
Q 002167 708 LWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSL 787 (957)
Q Consensus 708 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L 787 (957)
. .+..++.|+.|||++|+++|.+|++++++++|+.|
T Consensus 626 ~--------------------------------------------~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 661 (768)
T 3rgz_A 626 P--------------------------------------------TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661 (768)
T ss_dssp C--------------------------------------------SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred h--------------------------------------------hhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence 2 12236789999999999999999999999999999
Q ss_pred ECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCCCCCCcccCCcccCCcCCC
Q 002167 788 NISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLC 867 (957)
Q Consensus 788 ~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc 867 (957)
||++|+++|.||+.|+++++|++||||+|+++|.||..++++++|++||+|+|+|+|+||.++||.+|...+|.||++||
T Consensus 662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEE
T ss_pred eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC
Q 002167 868 GFPLSKSCSIDE 879 (957)
Q Consensus 868 g~~~~~~c~~~~ 879 (957)
|.|+. .|....
T Consensus 742 g~~l~-~C~~~~ 752 (768)
T 3rgz_A 742 GYPLP-RCDPSN 752 (768)
T ss_dssp STTSC-CCCSCC
T ss_pred CCCCc-CCCCCc
Confidence 99987 897633
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3e-72 Score=689.97 Aligned_cols=633 Identities=31% Similarity=0.450 Sum_probs=540.0
Q ss_pred EEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCc--hhhcCCCCCcEEECCCCccCccCchhhhhcCCCC
Q 002167 88 VIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISS--GFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQL 165 (957)
Q Consensus 88 v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~--~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L 165 (957)
+..++++.++ .++....+..+++|++|+|++|.+.+. +|. .+ +.+++|++|++++|.+.+.+|..+...+++|
T Consensus 79 L~~l~~~~~~---~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 153 (768)
T 3rgz_A 79 LESLFLSNSH---INGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSL-GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153 (768)
T ss_dssp CCEEECTTSC---EEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGG-GGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred ccccCCcCCC---cCCCchhhccCCCCCEEECCCCcCCCc-CCChHHH-hCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence 3444555444 333223799999999999999999765 665 66 9999999999999999999998874459999
Q ss_pred CEEEccCCcCCCCcchh---ccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEe
Q 002167 166 AYLDLSINSFIGHIPSS---FSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLD 242 (957)
Q Consensus 166 ~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 242 (957)
++|+|++|.+++..|.. +.++++|++|++++|.+.+..|. . ++++|++|++++|.+++.+|. ++++++|++|+
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~-~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~ 229 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--S-RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--T-TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEE
T ss_pred CEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--c-cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEE
Confidence 99999999999888877 89999999999999999877765 3 899999999999999988887 99999999999
Q ss_pred ccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCcccccc-CcCceeeccCCcC
Q 002167 243 LDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNL-TQLSFLGLAYNEL 321 (957)
Q Consensus 243 Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l 321 (957)
+++|++++.+|..+.. +++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+
T Consensus 230 Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 230 ISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp CCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred CcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence 9999999899988877 999999999999999888765 89999999999999999999988775 9999999999999
Q ss_pred CCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChh
Q 002167 322 IGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDN 401 (957)
Q Consensus 322 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~ 401 (957)
++.+|..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+. +.+|..
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~------------------------~~~p~~ 362 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS------------------------GELPES 362 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE------------------------ECCCTT
T ss_pred CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC------------------------ccccHH
Confidence 99999999999999999999999998888877888888888888888742 367777
Q ss_pred hhcCC-CCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEE
Q 002167 402 LRTQH-QLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFS 480 (957)
Q Consensus 402 l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ 480 (957)
+..++ +|++|++++|.+++.+|..+..... ++|++|+
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~------------------------------------------~~L~~L~ 400 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPK------------------------------------------NTLQELY 400 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTT------------------------------------------CCCCEEE
T ss_pred HHhhhcCCcEEEccCCCcCCCcChhhhhccc------------------------------------------CCccEEE
Confidence 87776 8999999999998887776543111 4566667
Q ss_pred eccCCccCCCCccccCCCCCCEEEcccCcCccCCCcccccc-ccceeecccccccCcCCCcCCCCCCccEEEccCCcCCC
Q 002167 481 ISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNS-TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEG 559 (957)
Q Consensus 481 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 559 (957)
+++|.+++.+|..+.++++|++|++++|.+++.+|..+... +|++|++++|++++.+|..+..+++|++|++++|++++
T Consensus 401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 77777777777788888888888888888888777776554 78888888888888888888888888888888888888
Q ss_pred CCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccC
Q 002167 560 PLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVN 638 (957)
Q Consensus 560 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 638 (957)
.+|..+.++++|++|++++|++++.+|.+++. ++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+..
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 88888888888888888888888888888876 88888888888888888888888888999999999888888888877
Q ss_pred CCCCcEEeCCCC----------------------ccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEE
Q 002167 639 CQYLEVLDVGNN----------------------QIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMD 696 (957)
Q Consensus 639 l~~L~~L~ls~n----------------------~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ld 696 (957)
+..+..+++..+ .+.+..+..+..++.++.+++..|.+.|.+|... ..+++|+.||
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~--~~l~~L~~Ld 638 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF--DNNGSMMFLD 638 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC--SSSBCCCEEE
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh--hccccccEEE
Confidence 766665554431 2445667777888888999999999999988766 6688999999
Q ss_pred cCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcc
Q 002167 697 CSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPE 776 (957)
Q Consensus 697 ls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~ 776 (957)
+++|+++|.+|..+ ..++.|+.|||++|+++|.||+
T Consensus 639 Ls~N~l~g~ip~~l--------------------------------------------~~l~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 639 MSYNMLSGYIPKEI--------------------------------------------GSMPYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp CCSSCCBSCCCGGG--------------------------------------------GGCTTCCEEECCSSCCCSCCCG
T ss_pred CcCCcccccCCHHH--------------------------------------------hccccCCEEeCcCCccCCCCCh
Confidence 99999999999653 1257889999999999999999
Q ss_pred cccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCc-cccc
Q 002167 777 VVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQ-LEGP 845 (957)
Q Consensus 777 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~-l~g~ 845 (957)
.|+++++|++||||+|+++|.||+.++++++|++||+|+|+++|.||.. ..+..+....+.+|+ |+|.
T Consensus 675 ~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 9999999999999999999999999999999999999999999999975 445556666777885 7774
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4e-58 Score=559.79 Aligned_cols=606 Identities=22% Similarity=0.248 Sum_probs=401.5
Q ss_pred EEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccC
Q 002167 142 LLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSS 221 (957)
Q Consensus 142 ~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~ 221 (957)
.+++++++++ ++|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+.+..|..+. ++++|++|++++
T Consensus 8 ~~~cs~~~L~-~ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~ 82 (680)
T 1ziw_A 8 VADCSHLKLT-QVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ-KLPMLKVLNLQH 82 (680)
T ss_dssp EEECCSSCCS-SCCSCSC---TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH-HCTTCCEEECCS
T ss_pred eeECCCCCcc-ccccccC---CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh-cccCcCEEECCC
Confidence 4555555554 5554432 3556666666665555555556666666666666665544444444 566666666666
Q ss_pred CCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccC
Q 002167 222 NSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI 301 (957)
Q Consensus 222 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 301 (957)
|.+++..+..|+++++|++|++++|++++..|..+.. +++|++|++++|.+++..|..+.++++|++|++++|.+++..
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTT-CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccc-cCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence 6666444445666666666666666665322333433 666666666666666666666666666777777766666555
Q ss_pred Ccccc--ccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCC
Q 002167 302 PDMFT--NLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTAN 379 (957)
Q Consensus 302 p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 379 (957)
+..+. .+++|++|++++|.+++..|..+..+.+|+.|++.++.+.+....
T Consensus 162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~---------------------------- 213 (680)
T 1ziw_A 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE---------------------------- 213 (680)
T ss_dssp HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHH----------------------------
T ss_pred HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHH----------------------------
Confidence 54443 346677777777777666666666666666666666554321110
Q ss_pred CccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceee
Q 002167 380 SSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLH 459 (957)
Q Consensus 380 ~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~ 459 (957)
.++..+ ..++|+.|++++|.+.+..|.++.....++|+.|++++|.++++.+..+..+
T Consensus 214 -----------------~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l---- 271 (680)
T 1ziw_A 214 -----------------KLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL---- 271 (680)
T ss_dssp -----------------HHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTC----
T ss_pred -----------------HHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCc----
Confidence 000001 1234445555555554444444443322335555555554444433222221
Q ss_pred ccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccC-----CCc----cc-cccccceeecc
Q 002167 460 LDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ-----IPQ----CL-GNSTLETLDLR 529 (957)
Q Consensus 460 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----~p~----~~-~~~~L~~L~L~ 529 (957)
++|++|++++|.+.+..|..|..+++|++|++++|...+. +|. .+ ...+|++|+++
T Consensus 272 --------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~ 337 (680)
T 1ziw_A 272 --------------PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337 (680)
T ss_dssp --------------TTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred --------------ccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence 5666666677777666777777777788887777655432 221 22 23478888888
Q ss_pred cccccCcCCCcCCCCCCccEEEccCCcCCCC--CCccccC--CCCCCeEEcCCCccccccCccccC-CcccEEECCCCcC
Q 002167 530 MNNFQGSIPQTNAKGCKLTYLRLSGNHLEGP--LPPSLTN--CVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNF 604 (957)
Q Consensus 530 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l 604 (957)
+|++.+..+..+..+++|++|++++|.+... ....+.. .++|+.|++++|++++..|..+.. ++|++|++++|.+
T Consensus 338 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 417 (680)
T 1ziw_A 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417 (680)
T ss_dssp SCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC
Confidence 8888877777788888888888888875432 1222332 257888888888888777777765 7888888888888
Q ss_pred CCCCc-cccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccc--cCccccccccccccEEEcccccccccCC
Q 002167 605 SGSLP-QTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID--DTFPYWLDVLLELQVLILRSNRFWGPIG 681 (957)
Q Consensus 605 ~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~--~~~p~~l~~l~~L~~L~L~~n~~~~~~~ 681 (957)
++.+| ..|..+++|++|++++|++++..+..|..+++|+.|++++|.+. +..|.++..+++|++|++++|++.+..+
T Consensus 418 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~ 497 (680)
T 1ziw_A 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497 (680)
T ss_dssp EEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh
Confidence 77665 57888888888888888888877888888888888888888876 5678888888888888888888876555
Q ss_pred CCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccce
Q 002167 682 DTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFA 761 (957)
Q Consensus 682 ~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 761 (957)
... ..+++|+.|++++|++++..+..+-+ .....+..+++|+
T Consensus 498 ~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 498 DML--EGLEKLEILDLQHNNLARLWKHANPG------------------------------------GPIYFLKGLSHLH 539 (680)
T ss_dssp TTT--TTCTTCCEEECCSSCCGGGGSTTSTT------------------------------------SCCCTTTTCTTCC
T ss_pred hhh--ccccccCEEeCCCCCccccchhhccC------------------------------------CcchhhcCCCCCC
Confidence 433 56788888999988887642211000 0000112368899
Q ss_pred EEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCc-CCCCCCeEECccC
Q 002167 762 TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLA-SLNYLSVLNLSNN 840 (957)
Q Consensus 762 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~L~ls~N 840 (957)
.|+|++|+++...+..|+++++|+.|+|++|++++..+..|.++++|++|+|++|++++.+|..+. .+++|+.+++++|
T Consensus 540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence 999999999965556799999999999999999988888899999999999999999999888887 7899999999999
Q ss_pred cccccCCCCCCCCcc
Q 002167 841 QLEGPIPGGPQFNTF 855 (957)
Q Consensus 841 ~l~g~ip~~~~~~~~ 855 (957)
++.|.++...+|..|
T Consensus 620 ~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 620 PFDCTCESIAWFVNW 634 (680)
T ss_dssp CCCBCCCCCSSEECC
T ss_pred CcccCCccHHHHHHH
Confidence 999999863445444
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.7e-56 Score=539.69 Aligned_cols=598 Identities=22% Similarity=0.252 Sum_probs=412.9
Q ss_pred EEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEc
Q 002167 91 LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170 (957)
Q Consensus 91 l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~L 170 (957)
+|+++++++ .+|. .+. +++++|+|++|.+.+ +++..|.++++|++|++++|.+.+..|..+.. +++|++|+|
T Consensus 9 ~~cs~~~L~-~ip~--~~~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L 80 (680)
T 1ziw_A 9 ADCSHLKLT-QVPD--DLP--TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNL 80 (680)
T ss_dssp EECCSSCCS-SCCS--CSC--TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEEC
T ss_pred eECCCCCcc-cccc--ccC--CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEEC
Confidence 566666664 3554 332 789999999999876 55554589999999999999999767777776 999999999
Q ss_pred cCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCcc
Q 002167 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG 250 (957)
Q Consensus 171 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 250 (957)
++|.+++..+..|+++++|++|++++|.+.+..|..+. ++++|++|++++|.+++..|..++++++|++|++++|.+++
T Consensus 81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTT-TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred CCCccCccChhhhccCCCCCEEECCCCccCccChhHcc-ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 99999876666799999999999999999855455665 89999999999999998888889999999999999999986
Q ss_pred ccchhHhh-hccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCcccc---ccCcCceeeccCCcCCCCCC
Q 002167 251 EIPASLGN-NITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFT---NLTQLSFLGLAYNELIGSIP 326 (957)
Q Consensus 251 ~ip~~l~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p 326 (957)
..+..+.. .+++|++|++++|.+++..|..+..+.+|+.|+++++.+.+.....+. ..++|++|++++|.+++..|
T Consensus 160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~ 239 (680)
T 1ziw_A 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239 (680)
T ss_dssp BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT
T ss_pred cCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh
Confidence 55554432 257899999999999988888888999999999988877543222111 23678888888888887777
Q ss_pred cchhcccC--CceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCC-cChhhh
Q 002167 327 SSIFELLN--LTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISE-FPDNLR 403 (957)
Q Consensus 327 ~~l~~l~~--L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-lp~~l~ 403 (957)
..+..++. |++|++++|.+.+.. ...+..+++|++|++++|. +.. .|..+.
T Consensus 240 ~~~~~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~-------------------------l~~~~~~~~~ 293 (680)
T 1ziw_A 240 TTFLGLKWTNLTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNN-------------------------IQHLFSHSLH 293 (680)
T ss_dssp TTTGGGGGSCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSCC-------------------------BSEECTTTTT
T ss_pred hHhhccCcCCCCEEECCCCCcCccC-cccccCcccccEeeCCCCc-------------------------cCccChhhhc
Confidence 77776654 777777777665322 2223344444444444333 222 233455
Q ss_pred cCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEecc
Q 002167 404 TQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISN 483 (957)
Q Consensus 404 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 483 (957)
.+++|++|++++|...+.++.. .+..+....+ ...++|++|++++
T Consensus 294 ~l~~L~~L~L~~~~~~~~~~~~-----------------~lp~i~~~~~------------------~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 294 GLFNVRYLNLKRSFTKQSISLA-----------------SLPKIDDFSF------------------QWLKCLEHLNMED 338 (680)
T ss_dssp TCTTCCEEECTTCBCCC-----------------------CCEECTTTT------------------TTCTTCCEEECCS
T ss_pred CCCCccEEeccchhhhcccccc-----------------cccccChhhc------------------ccCCCCCEEECCC
Confidence 5666666666655443322100 0000000000 1126777888888
Q ss_pred CCccCCCCccccCCCCCCEEEcccCcCccC-CCc-cccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCC
Q 002167 484 NSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ-IPQ-CLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPL 561 (957)
Q Consensus 484 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 561 (957)
|.+++..+..|..+++|++|++++|.+... ++. .+.. ...++|+.|++++|++++..
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~---------------------~~~~~L~~L~L~~n~l~~~~ 397 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS---------------------LAHSPLHILNLTKNKISKIE 397 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGG---------------------GTTSCCCEEECTTSCCCEEC
T ss_pred CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcc---------------------cccCcCceEECCCCCCCeEC
Confidence 888877777777788888888887765432 111 1110 01135556666666665555
Q ss_pred CccccCCCCCCeEEcCCCccccccCc-cccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCc--cCCCcccc
Q 002167 562 PPSLTNCVKLQFLDVGNNNLSGQIPE-CLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLK--GPLPPSLV 637 (957)
Q Consensus 562 p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~--~~~p~~l~ 637 (957)
|..+..+++|++|++++|.+++.+|. .+.. ++|++|++++|++.+..+..|..+++|+.|++++|.++ +.+|..+.
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 55566666666666666666555542 3332 56666666666666555666666666666666666665 34566666
Q ss_pred CCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCC------CCccCCCCceEEEcCCCcCcCCCchHHH
Q 002167 638 NCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDT------KTRVPFPKLRIMDCSHNQLTGVLPLWYL 711 (957)
Q Consensus 638 ~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~------~~~~~l~~L~~Ldls~N~l~g~ip~~~~ 711 (957)
++++|+.|++++|++++..|..+..+++|++|++++|++.+..+.. .....+++|+.|++++|+++ .+|...+
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~ 556 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVF 556 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHc
Confidence 6666666777666666666666666667777777776665432211 12356788999999999988 4553221
Q ss_pred hhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCC
Q 002167 712 ESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISH 791 (957)
Q Consensus 712 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~ 791 (957)
..++.|+.|||++|++++..+..|..+++|+.|+|++
T Consensus 557 -------------------------------------------~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 557 -------------------------------------------KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp -------------------------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred -------------------------------------------ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCC
Confidence 1257899999999999988888889999999999999
Q ss_pred CcCCCCCchhhh-hccCCCEEECCCCcccccCc
Q 002167 792 NNLTGCIPSSLR-NLTELESLDLSSNKLAGRIP 823 (957)
Q Consensus 792 N~l~~~ip~~l~-~L~~L~~L~Ls~N~l~g~ip 823 (957)
|++++..|..++ .+++|+.|++++|++....+
T Consensus 594 N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp SCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999999999898 89999999999999998654
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-54 Score=535.39 Aligned_cols=573 Identities=24% Similarity=0.254 Sum_probs=367.3
Q ss_pred cEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEcc
Q 002167 141 TLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220 (957)
Q Consensus 141 ~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls 220 (957)
+..+.++++++ .+|. + .++|++|||++|.+++..|..|.++++|++|+|++|...+.++...+.++++|++|+|+
T Consensus 7 ~~~dcs~~~L~-~vP~-l---p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ-V---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS-CCCS-S---CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCC-CCCC-C---CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 35677777777 7776 2 56788888888888877778888888888888888866666643333378888888888
Q ss_pred CCCCCCCCCcccCCCCcccEEeccCCCCccccchh--HhhhccCCcEEECcCCcCCccCc-ccccCcCCCcEEEeccCcC
Q 002167 221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS--LGNNITQLAYLDLSSNGFSGHIP-SSFSNLQQLLWLNLEYNNF 297 (957)
Q Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~--l~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l 297 (957)
+|.+++..|..|+++++|++|++++|.+++.+|.. +.. +++|++|++++|.+++..+ ..|+++++|++|++++|.+
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN-LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS-CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc-cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 88888777888888888888888888887656554 443 7778888888777776544 4677777777777777777
Q ss_pred cccCCcccccc--CcCceeeccCCcCCCCCCcchhcccC------CceEecCCCCCcccccchhhhcCCCCcEEEccccc
Q 002167 298 VGKIPDMFTNL--TQLSFLGLAYNELIGSIPSSIFELLN------LTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS 369 (957)
Q Consensus 298 ~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~ 369 (957)
.+..+..+..+ ++|+.|+++.|.+.+..|..+..+.+ |++|++++|.+.+..+......
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~------------- 227 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA------------- 227 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT-------------
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh-------------
Confidence 77777777666 67777777777776665555444333 4444444444332221110000
Q ss_pred ccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCC
Q 002167 370 LSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDH 449 (957)
Q Consensus 370 ~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~ 449 (957)
.....++.+.++.+.+... ...+.+.....
T Consensus 228 ---------------------------------l~~~~l~~L~l~~~~~~~~-----------------~~~~~l~~~~~ 257 (844)
T 3j0a_A 228 ---------------------------------ISKSQAFSLILAHHIMGAG-----------------FGFHNIKDPDQ 257 (844)
T ss_dssp ---------------------------------SCSCCBSEEECCSSCCBCS-----------------SSCSSSTTGGG
T ss_pred ---------------------------------cCcccccceeccccccccc-----------------ccccccCCCCh
Confidence 0011223333322111100 00001111100
Q ss_pred CCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecc
Q 002167 450 LPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLR 529 (957)
Q Consensus 450 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~ 529 (957)
..+..+ .+++++.|++++|.+.+..+..|..+++|+.|++++|.+++..|..
T Consensus 258 ~~f~~l----------------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~------------ 309 (844)
T 3j0a_A 258 NTFAGL----------------ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA------------ 309 (844)
T ss_dssp TTTTTT----------------TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT------------
T ss_pred hhhhcc----------------ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH------------
Confidence 000000 0245666666666666666666666677777777766666554443
Q ss_pred cccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCC
Q 002167 530 MNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSL 608 (957)
Q Consensus 530 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~ 608 (957)
+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+.. ++|++|++++|.+++.
T Consensus 310 -----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i- 377 (844)
T 3j0a_A 310 -----------FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI- 377 (844)
T ss_dssp -----------TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-
T ss_pred -----------hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-
Confidence 344445555555555555444555555555555555555554444444433 5555555555555421
Q ss_pred ccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccC-ccccccccccccEEEcccccccccCCCCCCcc
Q 002167 609 PQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDT-FPYWLDVLLELQVLILRSNRFWGPIGDTKTRV 687 (957)
Q Consensus 609 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 687 (957)
..+++|+.|++++|+++ .+|.. ..+++.|++++|++++. .+..+..+++|++|++++|++.+..+.. ...
T Consensus 378 ----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~ 448 (844)
T 3j0a_A 378 ----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ-TPS 448 (844)
T ss_dssp ----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS-SSC
T ss_pred ----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc-ccc
Confidence 12556666666666666 33432 34567777777777654 2234556777777777777776543322 223
Q ss_pred CCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEccc
Q 002167 688 PFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSS 767 (957)
Q Consensus 688 ~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 767 (957)
.+++|+.|++++|.+++..+.... ...+..+++|+.|||++
T Consensus 449 ~~~~L~~L~Ls~N~l~~~~~~~~~---------------------------------------~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 449 ENPSLEQLFLGENMLQLAWETELC---------------------------------------WDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp SCTTCCBCEEESCCCSSSCCSCCC---------------------------------------SSCSSCBCCEECCCCCH
T ss_pred cCCccccccCCCCccccccccccc---------------------------------------hhhhcCcccccEEECCC
Confidence 467888888888888754331100 00012267899999999
Q ss_pred CccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCC
Q 002167 768 NRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 847 (957)
Q Consensus 768 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip 847 (957)
|++++.+|..|+.+++|+.|+|++|++++..|..+. ++|++|||++|++++.+|..+. +|+.|++++|++.|.|+
T Consensus 490 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECE 564 (844)
T ss_dssp HHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSS
T ss_pred CcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccc
Confidence 999999999999999999999999999998887776 8999999999999999998764 78899999999999988
Q ss_pred CCCCCCcccCCcccCCcCCCCCCCCCCCCCCC
Q 002167 848 GGPQFNTFGNDSYSGNSGLCGFPLSKSCSIDE 879 (957)
Q Consensus 848 ~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~~ 879 (957)
.. .|..|...++..+||.+....|..+.
T Consensus 565 ~~----~f~~~~~~~~~~~~~~~~~~~C~~p~ 592 (844)
T 3j0a_A 565 LS----TFINWLNHTNVTIAGPPADIYCVYPD 592 (844)
T ss_dssp CC----SHHHHHHHTTTTTCCCGGGCCCSSCS
T ss_pred cH----HHHHHHHhcCcccccccccCccCCch
Confidence 53 24445556778888887777887654
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-53 Score=510.53 Aligned_cols=542 Identities=23% Similarity=0.226 Sum_probs=301.2
Q ss_pred eeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEcc
Q 002167 116 KLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ 195 (957)
Q Consensus 116 ~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 195 (957)
.++.++..++. +|..+ .+++++|++++|.+++..|..+.. +++|++|+|++|.+.+..|..|+++++|++|+++
T Consensus 16 ~~~c~~~~l~~--iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 16 TYNCENLGLNE--IPGTL---PNSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp EEECTTSCCSS--CCTTS---CTTCCEEECTTCCCSEECTTTSTT-CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred eEECCCCCccc--CcCCC---CCcCcEEEccCCccCcCChhHhcc-CccceEEECCCCccceeChhhccCccccCeeeCC
Confidence 45555555432 45444 235566666666665443444444 6666666666666655555556666666666666
Q ss_pred CCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCc
Q 002167 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSG 275 (957)
Q Consensus 196 ~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~ 275 (957)
+|.+.+..|..+. ++++|++|++++|.+++..|..++++++|++|++++|++.+..+..+.. +++|++|++++|.+++
T Consensus 90 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 90 ANPLIFMAETALS-GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP-TEKLKVLDFQNNAIHY 167 (606)
T ss_dssp TCCCSEECTTTTS-SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCC-CTTCCEEECCSSCCCE
T ss_pred CCcccccChhhhc-ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccC-CcccCEEEcccCcccc
Confidence 6655544444444 5556666666666555544455555555555555555555311122222 5555555555555554
Q ss_pred cCcccccCcCCCc--EEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchh
Q 002167 276 HIPSSFSNLQQLL--WLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYD 353 (957)
Q Consensus 276 ~~p~~l~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~ 353 (957)
..+..++.+++|+ +|++++|.+.+..|..+.. .+|++|++++|. .++..+..
T Consensus 168 ~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~---------------------- 221 (606)
T 3t6q_A 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKG---------------------- 221 (606)
T ss_dssp ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHH----------------------
T ss_pred cChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhh----------------------
Confidence 4444455555555 4455555554444433322 344444444432 11111111
Q ss_pred hhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCc
Q 002167 354 FAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHT 433 (957)
Q Consensus 354 l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~ 433 (957)
+.+++...+.-.. +..+...+ +. +..+.....
T Consensus 222 ---l~~~~l~~l~~~~-----------------------------------~~~~~~~~-----i~---~~~~~~l~~-- 253 (606)
T 3t6q_A 222 ---LKNSTIQSLWLGT-----------------------------------FEDMDDED-----IS---PAVFEGLCE-- 253 (606)
T ss_dssp ---TTTCEEEEEECCC-----------------------------------CTTSCCCC-----CC---GGGGGGGGG--
T ss_pred ---ccccchhheechh-----------------------------------hccccccc-----cC---hhHhchhhc--
Confidence 1111111111000 00000000 00 000100000
Q ss_pred ceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccC
Q 002167 434 LIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQ 513 (957)
Q Consensus 434 L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 513 (957)
.+++.|++++|.+++..+..|..+++|++|++++|.++ .
T Consensus 254 ----------------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~ 292 (606)
T 3t6q_A 254 ----------------------------------------MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-E 292 (606)
T ss_dssp ----------------------------------------SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-C
T ss_pred ----------------------------------------CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-C
Confidence 13444555555555555555666777777777777666 4
Q ss_pred CCccccc-cccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCc-cccCCCCCCeEEcCCCcccccc--Cccc
Q 002167 514 IPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPP-SLTNCVKLQFLDVGNNNLSGQI--PECL 589 (957)
Q Consensus 514 ~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~--p~~~ 589 (957)
+|..+.. .+|++|++++|++.+..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++.. +..+
T Consensus 293 lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 372 (606)
T 3t6q_A 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372 (606)
T ss_dssp CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence 4443322 2455555555554444444455555566666666655544433 2555566666666666555433 3333
Q ss_pred cC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCc-cccCCCCCcEEeCCCCccccCcccccccccccc
Q 002167 590 GN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPP-SLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQ 667 (957)
Q Consensus 590 ~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~ 667 (957)
.. ++|++|++++|++.+..|..|..+++|+.|++++|++++..|. .+.++++|++|++++|.+.+..|..+..
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----- 447 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG----- 447 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT-----
T ss_pred ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC-----
Confidence 33 4555555555555544455555555555555555555544332 2455555555555555555544444444
Q ss_pred EEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCC-CchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEE
Q 002167 668 VLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV-LPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTM 746 (957)
Q Consensus 668 ~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~-ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (957)
+++|+.|++++|++++. +|..
T Consensus 448 ---------------------l~~L~~L~L~~n~l~~~~~~~~------------------------------------- 469 (606)
T 3t6q_A 448 ---------------------LPALQHLNLQGNHFPKGNIQKT------------------------------------- 469 (606)
T ss_dssp ---------------------CTTCCEEECTTCBCGGGEECSS-------------------------------------
T ss_pred ---------------------CCCCCEEECCCCCCCccccccc-------------------------------------
Confidence 44555555555555542 1110
Q ss_pred echhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccC
Q 002167 747 KGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQL 826 (957)
Q Consensus 747 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l 826 (957)
..+..+++|+.|+|++|++++.+|..|+.+++|+.|+|++|++++.+|+.++++++| +|++++|++++.+|..+
T Consensus 470 -----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~ 543 (606)
T 3t6q_A 470 -----NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543 (606)
T ss_dssp -----CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGH
T ss_pred -----hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhc
Confidence 001125789999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cCCCCCCeEECccCcccccCCCC
Q 002167 827 ASLNYLSVLNLSNNQLEGPIPGG 849 (957)
Q Consensus 827 ~~l~~L~~L~ls~N~l~g~ip~~ 849 (957)
..+++|++|++++|+++|.++..
T Consensus 544 ~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 544 PILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp HHHHTSSEEECTTCCEECSGGGH
T ss_pred ccCCCCCEEeCCCCCccccCCcH
Confidence 99999999999999999988743
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.3e-53 Score=505.98 Aligned_cols=540 Identities=21% Similarity=0.193 Sum_probs=306.1
Q ss_pred CeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEc
Q 002167 115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL 194 (957)
Q Consensus 115 ~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 194 (957)
++++.+++.++. +|..+ .++|++|++++|.+++..+..+.. +++|++|++++|.+++..|..|.++++|++|++
T Consensus 14 ~~~~c~~~~l~~--ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 14 ITYQCMDQKLSK--VPDDI---PSSTKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TEEECTTSCCSS--CCTTS---CTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CceEccCCCccc--CCCCC---CCCcCEEECCCCCcCEeChhhccC-CccCcEEeCCCCcccccCHHHhhchhhcCEeEC
Confidence 345555555543 44433 255566666666655333334443 556666666666555555555555555555555
Q ss_pred cCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCcc-ccchhHhhhccCCcEEECcCCcC
Q 002167 195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG-EIPASLGNNITQLAYLDLSSNGF 273 (957)
Q Consensus 195 ~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~l~~~l~~L~~L~Ls~n~l 273 (957)
++|.+.+..|..+. ++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+
T Consensus 88 s~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 88 TGNPIQSFSPGSFS-GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN-LTNLVHVDLSYNYI 165 (606)
T ss_dssp TTCCCCCCCTTSST-TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT-CTTCCEEECCSSCC
T ss_pred CCCcccccChhhcC-CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhh-cCCCCEEEccCCcc
Confidence 55555544444444 55555555555555554444555555555555555555543 34444443 55555555555555
Q ss_pred CccCcccccCcCCCc----EEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccc
Q 002167 274 SGHIPSSFSNLQQLL----WLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSV 349 (957)
Q Consensus 274 ~~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 349 (957)
++..+..++.+++|+ +|++++|.+.+..+..+.. .+|++|++++|.+.+..
T Consensus 166 ~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-------------------------~~L~~L~L~~n~~~~~~ 220 (606)
T 3vq2_A 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-------------------------IKLHELTLRGNFNSSNI 220 (606)
T ss_dssp CEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-------------------------CEEEEEEEESCCSCHHH
T ss_pred eecChhhhhhhhccccccceeeccCCCcceeCcccccC-------------------------ceeeeeeccCCccchhH
Confidence 544444444443332 4444444444333333322 24555555555444333
Q ss_pred cchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEEC-cCCcCCCCCChhhhh
Q 002167 350 ELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDL-SENQIGGRIPSWMWD 428 (957)
Q Consensus 350 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~L-s~n~l~~~~p~~~~~ 428 (957)
....+.++++|+.+++............... ...+..+..+ .++.+++ ..+
T Consensus 221 ~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~---------------~~~~~~l~~l-~l~~l~l~~~~------------ 272 (606)
T 3vq2_A 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFE---------------PSIMEGLCDV-TIDEFRLTYTN------------ 272 (606)
T ss_dssp HHHHHHTTTTCEEEEEEEECCTTSCCCSCCC---------------GGGGTTGGGS-EEEEEEECCCT------------
T ss_pred HHHHhccccccccccccccccccCCcccccC---------------hHHhhhhhhc-cHhheeccccc------------
Confidence 3334445555555544433211100000000 0000011111 1222232 222
Q ss_pred hccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccC
Q 002167 429 IGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNN 508 (957)
Q Consensus 429 ~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n 508 (957)
.+.+.+|. +..+++|+.|++++|
T Consensus 273 --------------------------------------------------------~~~~~~~~-~~~l~~L~~L~l~~~ 295 (606)
T 3vq2_A 273 --------------------------------------------------------DFSDDIVK-FHCLANVSAMSLAGV 295 (606)
T ss_dssp --------------------------------------------------------TCCGGGGS-CGGGTTCSEEEEESC
T ss_pred --------------------------------------------------------cccccccc-cccCCCCCEEEecCc
Confidence 22233332 333444444444444
Q ss_pred cCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccc--cC
Q 002167 509 SLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQ--IP 586 (957)
Q Consensus 509 ~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p 586 (957)
.+. .+|......+|++|++++|++ +.+| .+ .+++|++|++++|+..+.. .+..+++|++|++++|.+++. +|
T Consensus 296 ~~~-~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~ 369 (606)
T 3vq2_A 296 SIK-YLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCS 369 (606)
T ss_dssp CCC-CCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECC
T ss_pred cch-hhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchh
Confidence 443 222111122444444444444 3333 22 4455555555555433322 345566666666666666544 24
Q ss_pred ccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCC-ccccCCCCCcEEeCCCCccccCccccccccc
Q 002167 587 ECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLP-PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLL 664 (957)
Q Consensus 587 ~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~ 664 (957)
..+.. ++|++|++++|.+++ +|..+..+++|+.|++++|++++..| ..+.++++|++|++++|.+.+..|..+..++
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 44433 666777777766663 44667777778888888888777766 5777788888888888888777777776666
Q ss_pred cccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEE
Q 002167 665 ELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFL 744 (957)
Q Consensus 665 ~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (957)
+|++|++++|++.+. .+|..
T Consensus 449 ~L~~L~l~~n~l~~~-------------------------~~~~~----------------------------------- 468 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDN-------------------------TLSNV----------------------------------- 468 (606)
T ss_dssp TCCEEECTTCEEGGG-------------------------EECSC-----------------------------------
T ss_pred CCCEEECCCCcCCCc-------------------------chHHh-----------------------------------
Confidence 666666655554331 11111
Q ss_pred EEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcc
Q 002167 745 TMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPT 824 (957)
Q Consensus 745 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~ 824 (957)
+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|..++++++|++|||++|+++ .+|.
T Consensus 469 ---------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 469 ---------FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp ---------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred ---------hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 011467788888888888888999999999999999999999999999999999999999999999 6787
Q ss_pred cCcCCC-CCCeEECccCcccccCCCC
Q 002167 825 QLASLN-YLSVLNLSNNQLEGPIPGG 849 (957)
Q Consensus 825 ~l~~l~-~L~~L~ls~N~l~g~ip~~ 849 (957)
.+..++ +|++|++++|++.|.+|..
T Consensus 539 ~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred hHhhhcccCcEEEccCCCcccCCccH
Confidence 799886 6999999999999988853
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.4e-51 Score=488.98 Aligned_cols=537 Identities=21% Similarity=0.234 Sum_probs=400.9
Q ss_pred EEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEc
Q 002167 91 LDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDL 170 (957)
Q Consensus 91 l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~L 170 (957)
++.++.++. .+|. .+ -+++++|+|++|.+++. .|..+ +++++|++|++++|.+.+..|..+.. +++|++|+|
T Consensus 17 ~~c~~~~l~-~iP~--~l--~~~l~~L~Ls~n~i~~~-~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L 88 (606)
T 3t6q_A 17 YNCENLGLN-EIPG--TL--PNSTECLEFSFNVLPTI-QNTTF-SRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVL 88 (606)
T ss_dssp EECTTSCCS-SCCT--TS--CTTCCEEECTTCCCSEE-CTTTS-TTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEEC
T ss_pred EECCCCCcc-cCcC--CC--CCcCcEEEccCCccCcC-ChhHh-ccCccceEEECCCCccceeChhhccC-ccccCeeeC
Confidence 455555554 3443 22 24799999999999763 34455 99999999999999999777778887 999999999
Q ss_pred cCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCcc
Q 002167 171 SINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG 250 (957)
Q Consensus 171 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 250 (957)
++|.+.+..|..|+++++|++|++++|.+++..+..+. ++++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 89 TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp TTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT-TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred CCCcccccChhhhcccccccEeeccccCcccCCcchhc-cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence 99999998899999999999999999999865456665 89999999999999997554555569999999999999996
Q ss_pred ccchhHhhhccCCc--EEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcc
Q 002167 251 EIPASLGNNITQLA--YLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSS 328 (957)
Q Consensus 251 ~ip~~l~~~l~~L~--~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 328 (957)
..|..+.. +++|+ .|++++|.+.+..|..+.. .+|++|++++|. .++..+..+.+++...+....+.+
T Consensus 168 ~~~~~~~~-l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~----- 237 (606)
T 3t6q_A 168 LSKEDMSS-LQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFED----- 237 (606)
T ss_dssp ECHHHHHT-TTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTT-----
T ss_pred cChhhhhh-hcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhcc-----
Confidence 55666665 99999 9999999999877766654 689999999986 344555555555544443322211
Q ss_pred hhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCC
Q 002167 329 IFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQL 408 (957)
Q Consensus 329 l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L 408 (957)
+...++.. .....+.. .+|
T Consensus 238 ------~~~~~i~~------------------------------------------------------~~~~~l~~-~~L 256 (606)
T 3t6q_A 238 ------MDDEDISP------------------------------------------------------AVFEGLCE-MSV 256 (606)
T ss_dssp ------SCCCCCCG------------------------------------------------------GGGGGGGG-SEE
T ss_pred ------ccccccCh------------------------------------------------------hHhchhhc-Cce
Confidence 11000000 00011111 156
Q ss_pred CEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccC
Q 002167 409 ELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTG 488 (957)
Q Consensus 409 ~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~ 488 (957)
+.|++++|.+++..+..+... + +|++|++++|.++
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l--~------------------------------------------~L~~L~l~~n~l~- 291 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCF--S------------------------------------------GLQELDLTATHLS- 291 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTC--T------------------------------------------TCSEEECTTSCCS-
T ss_pred eEEEeecCccCccCHHHhccc--c------------------------------------------CCCEEeccCCccC-
Confidence 777777777776555544433 3 4444444444444
Q ss_pred CCCccccCCCCCCEEEcccCcCccCCCccccc-cccceeecccccccCcCCC-cCCCCCCccEEEccCCcCCCCC--Ccc
Q 002167 489 EIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQ-TNAKGCKLTYLRLSGNHLEGPL--PPS 564 (957)
Q Consensus 489 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~--p~~ 564 (957)
.+|..+..+++|++|++++|.+++..|..+.. ++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 44555666667777777777766555544433 3677777777776655544 3777888899999998888765 777
Q ss_pred ccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCcc-ccccCCCccEEEccCCcCccCCCccccCCCCC
Q 002167 565 LTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQ-TFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYL 642 (957)
Q Consensus 565 l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 642 (957)
+..+++|++|++++|.+.+..|..+.. ++|++|++++|++.+..+. .+..+++|+.|++++|.+++..|..+..+++|
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 888999999999999998888887766 8899999999998877655 48889999999999999998889999999999
Q ss_pred cEEeCCCCccccCc---cccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhcccc
Q 002167 643 EVLDVGNNQIDDTF---PYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMH 719 (957)
Q Consensus 643 ~~L~ls~n~l~~~~---p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~ 719 (957)
++|++++|++.+.. +..+..+++|+ .|++++|++++..|..+
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~--------------------------~L~Ls~n~l~~~~~~~~--------- 496 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLE--------------------------ILVLSFCDLSSIDQHAF--------- 496 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCC--------------------------EEECTTSCCCEECTTTT---------
T ss_pred CEEECCCCCCCccccccchhhccCCCcc--------------------------EEECCCCccCccChhhh---------
Confidence 99999999987632 23455555444 45555555554444221
Q ss_pred CCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCc
Q 002167 720 GNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIP 799 (957)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 799 (957)
..++.|+.|||++|++++.+|+.+++++.| .|+|++|++++.+|
T Consensus 497 -----------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 497 -----------------------------------TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp -----------------------------------TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred -----------------------------------ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 114678889999999999999999999999 99999999999999
Q ss_pred hhhhhccCCCEEECCCCcccccCc
Q 002167 800 SSLRNLTELESLDLSSNKLAGRIP 823 (957)
Q Consensus 800 ~~l~~L~~L~~L~Ls~N~l~g~ip 823 (957)
..++.+++|++|++++|++.+..+
T Consensus 541 ~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 541 SLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp GGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999999998665
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-53 Score=511.55 Aligned_cols=499 Identities=19% Similarity=0.274 Sum_probs=301.9
Q ss_pred CHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCCCCCccc---cceEecCCCCcEEEEEcCCCCCccccCCC
Q 002167 29 SHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCSW---DGVTCDSATGHVIGLDLSCSWLHGNIPSN 105 (957)
Q Consensus 29 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~c~w---~gv~c~~~~~~v~~l~L~~~~l~g~~~~~ 105 (957)
...|+.||.+|++++..+.- .+....++...+|..+++||.| .||+|+.. ++|++|+|+++++.|.+|+
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w------~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~- 99 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNW------SQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPD- 99 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGC------CCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECG-
T ss_pred HHHHHHHHHHHHHHcCCCCc------ccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCCh-
Confidence 34799999999999876531 1111234566799988999999 99999875 8999999999999999998
Q ss_pred CCccCCCCCCeeeCCCCCCC------C-----CCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEcc---
Q 002167 106 SSLFFLPRLRKLNLAFNDFN------G-----SKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLS--- 171 (957)
Q Consensus 106 ~~l~~l~~L~~L~Ls~n~~~------~-----~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls--- 171 (957)
+++.+++|++|+|++|.+. + ..+|... +.+|+ ++++++.+.+.+|..+...+..+..+++.
T Consensus 100 -~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~ 174 (636)
T 4eco_A 100 -AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174 (636)
T ss_dssp -GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred -HHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence 9999999999999999651 1 0234333 45566 77777777777776655322222222222
Q ss_pred -----------------CCcCCCCcchhccCCCCCCEEEccCCcCCCC-----------------Cchhhh-hCCCCCcE
Q 002167 172 -----------------INSFIGHIPSSFSNLHQLRHLDLQSNNFVGK-----------------IPASLG-NNITQLAY 216 (957)
Q Consensus 172 -----------------~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~l~-~~l~~L~~ 216 (957)
.|.+++ +|..++++++|++|+|++|.+++. +|..++ .++++|++
T Consensus 175 ~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~ 253 (636)
T 4eco_A 175 IKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTD 253 (636)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred cccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCE
Confidence 345555 666666666666666666666653 555542 24666666
Q ss_pred EEccCCCCCCCCCcccCCCCcccEEeccCCC-Ccc-ccchhHhhhc------cCCcEEECcCCcCCccCcc--cccCcCC
Q 002167 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH-FVG-EIPASLGNNI------TQLAYLDLSSNGFSGHIPS--SFSNLQQ 286 (957)
Q Consensus 217 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~ip~~l~~~l------~~L~~L~Ls~n~l~~~~p~--~l~~l~~ 286 (957)
|++++|.+.+.+|..++++++|++|++++|+ ++| .+|..++. + ++|++|++++|.++ .+|. .++++++
T Consensus 254 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~-L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~ 331 (636)
T 4eco_A 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA-LADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK 331 (636)
T ss_dssp EEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHH-HHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT
T ss_pred EEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHh-hhccccCCCCCEEECCCCcCC-ccCchhhhccCCC
Confidence 6666666666666666666666666666665 655 56665554 3 56666666666665 5555 5666666
Q ss_pred CcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccC-CceEecCCCCCcccccchhhhcCCCCcEEEc
Q 002167 287 LLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLN-LTEIYLSFSNFSGSVELYDFAKLKNLKVLSL 365 (957)
Q Consensus 287 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 365 (957)
|++|++++|.+.|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.+.
T Consensus 332 L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~------------------- 390 (636)
T 4eco_A 332 LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK------------------- 390 (636)
T ss_dssp CCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-------------------
T ss_pred CCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-------------------
Confidence 6666666666655555 5555556666666655555 44444444444 444444444433
Q ss_pred ccccccccccccCCCccccccccccccccCCCcChhhhcC--CCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcc
Q 002167 366 SNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQ--HQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNF 443 (957)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~--~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~ 443 (957)
.+|..+... ++|++|++++|.+++.+|..+......
T Consensus 391 -------------------------------~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~----------- 428 (636)
T 4eco_A 391 -------------------------------YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT----------- 428 (636)
T ss_dssp -------------------------------SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS-----------
T ss_pred -------------------------------ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc-----------
Confidence 233333222 255666666666655555443210000
Q ss_pred cCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccc-ccc-
Q 002167 444 LTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL-GNS- 521 (957)
Q Consensus 444 l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~~- 521 (957)
. ...++|+.|++++|.++...+..+..+++|++|++++|.++ .+|... ...
T Consensus 429 -------------~-------------~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~ 481 (636)
T 4eco_A 429 -------------P-------------FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN 481 (636)
T ss_dssp -------------C-------------CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT
T ss_pred -------------c-------------ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc
Confidence 0 00135555666666665333333455777888888888777 455432 211
Q ss_pred -------ccceeecccccccCcCCCcCC--CCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCC
Q 002167 522 -------TLETLDLRMNNFQGSIPQTNA--KGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNS 592 (957)
Q Consensus 522 -------~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 592 (957)
+|++|++++|+++ .+|..+. .+++|++|++++|++++ +|..+.++++|++|++++|+
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~------------ 547 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR------------ 547 (636)
T ss_dssp EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB------------
T ss_pred ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc------------
Confidence 4455555555444 3444443 44555555555555554 44445555555555554443
Q ss_pred cccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccC
Q 002167 593 TLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDT 655 (957)
Q Consensus 593 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~ 655 (957)
++++|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|++++|++...
T Consensus 548 -----~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 548 -----DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp -----CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred -----ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence 2366778888888888888888888888888 57777665 7888888888876543
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-50 Score=503.29 Aligned_cols=294 Identities=22% Similarity=0.209 Sum_probs=248.2
Q ss_pred cccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEEC
Q 002167 521 STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDM 599 (957)
Q Consensus 521 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~L 599 (957)
.+|+.|++++|.+.+..+..+..+++|++|++++|++++..|..+.++++|++|++++|.+++..|..+.. ++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 47888999999888888888999999999999999999988999999999999999999999888888866 99999999
Q ss_pred CCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEccccccccc
Q 002167 600 RMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGP 679 (957)
Q Consensus 600 s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~ 679 (957)
++|.+.+..+..|..+++|+.|+|++|.+++. ..+++|+.|++++|+++. +|.. ..+++.|++++|++.+.
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLTANLIHLSENRLENL 416 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTTCCEEECCSCCCCSS
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc---ccccceeecccCccccC
Confidence 99999988888899999999999999999842 337889999999999984 3433 56789999999998664
Q ss_pred CCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhccc
Q 002167 680 IGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTT 759 (957)
Q Consensus 680 ~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 759 (957)
.. ......+++|+.|++++|++++..+...+ ..+++
T Consensus 417 ~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------------------------------------~~~~~ 452 (844)
T 3j0a_A 417 DI-LYFLLRVPHLQILILNQNRFSSCSGDQTP-------------------------------------------SENPS 452 (844)
T ss_dssp TT-HHHHTTCTTCCEEEEESCCCCCCCSSSSS-------------------------------------------CSCTT
T ss_pred ch-hhhhhcCCccceeeCCCCccccccccccc-------------------------------------------ccCCc
Confidence 21 11123688999999999999875442110 01467
Q ss_pred ceEEEcccCccC-----ccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCe
Q 002167 760 FATIDLSSNRFQ-----RKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSV 834 (957)
Q Consensus 760 L~~L~Ls~N~l~-----~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~ 834 (957)
|+.|+|++|.++ +..|..|..+++|+.|+|++|++++.+|..|+++++|+.|+|++|++++..|..+. ++|++
T Consensus 453 L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~ 530 (844)
T 3j0a_A 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEI 530 (844)
T ss_dssp CCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCE
T ss_pred cccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccE
Confidence 899999999997 45567789999999999999999999999999999999999999999998887776 89999
Q ss_pred EECccCcccccCCCCCCCCcccCCcccCCcCCCCCCC
Q 002167 835 LNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFPL 871 (957)
Q Consensus 835 L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~~ 871 (957)
||+++|+++|.+|.. |.......+.|||..|.++.
T Consensus 531 L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 531 LDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp EEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred EECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 999999999999964 44555566789999997754
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8e-50 Score=479.98 Aligned_cols=527 Identities=21% Similarity=0.242 Sum_probs=334.5
Q ss_pred EEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEE
Q 002167 90 GLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLD 169 (957)
Q Consensus 90 ~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~ 169 (957)
.++.++.+++ .+|. .+ .+++++|+|++|.+.+ +++..|.++++|++|++++|.+++..|..+.. +++|++|+
T Consensus 15 ~~~c~~~~l~-~ip~--~~--~~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~-l~~L~~L~ 86 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPD--DI--PSSTKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLI 86 (606)
T ss_dssp EEECTTSCCS-SCCT--TS--CTTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEE
T ss_pred ceEccCCCcc-cCCC--CC--CCCcCEEECCCCCcCE--eChhhccCCccCcEEeCCCCcccccCHHHhhc-hhhcCEeE
Confidence 4577777765 4454 23 3799999999999976 44434499999999999999999666667776 99999999
Q ss_pred ccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCC-CCCcccCCCCcccEEeccCCCC
Q 002167 170 LSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG-HIPSSFSNLQQLCYLDLDDNHF 248 (957)
Q Consensus 170 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l 248 (957)
|++|.+++..|..|+++++|++|++++|.+.+..+..+. ++++|++|++++|.+++ .+|..++++++|++|++++|++
T Consensus 87 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l 165 (606)
T 3vq2_A 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165 (606)
T ss_dssp CTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT-TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred CCCCcccccChhhcCCcccCCEEEccCCccccccccccC-CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence 999999998899999999999999999999865556666 99999999999999986 5799999999999999999999
Q ss_pred ccccchhHhhhccCCc----EEECcCCcCCccCcccccCcCCCcEEEeccCcCc-ccCCccccccCcCceeeccCCcCCC
Q 002167 249 VGEIPASLGNNITQLA----YLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV-GKIPDMFTNLTQLSFLGLAYNELIG 323 (957)
Q Consensus 249 ~~~ip~~l~~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~ 323 (957)
++..|..+.. +++|+ +|++++|.+++..+..+... +|++|++++|.+. +..|..+.+++.|+.+++..+.+.+
T Consensus 166 ~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 243 (606)
T 3vq2_A 166 QTITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243 (606)
T ss_dssp CEECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred eecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccccc
Confidence 9766666654 66554 89999999996666555554 8999999999987 4677788999999998887655432
Q ss_pred CC------Ccchhccc--CCceEec-CCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCcccccccccccccc
Q 002167 324 SI------PSSIFELL--NLTEIYL-SFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACN 394 (957)
Q Consensus 324 ~~------p~~l~~l~--~L~~L~L-~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 394 (957)
.. +..+..+. .++.+++ ..+.+.+..+ .+..+++|+.|++++|.
T Consensus 244 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~---------------------------~~~~l~~L~~L~l~~~~ 296 (606)
T 3vq2_A 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV---------------------------KFHCLANVSAMSLAGVS 296 (606)
T ss_dssp SCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG---------------------------SCGGGTTCSEEEEESCC
T ss_pred CCcccccChHHhhhhhhccHhheecccccccccccc---------------------------ccccCCCCCEEEecCcc
Confidence 11 11111111 2333333 3333333322 23344555555555555
Q ss_pred CCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCC-CCCCCCCccceeeccCccCCCCCCCCC
Q 002167 395 ISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTS-IDHLPWKNLEYLHLDSNSLQGSLPDLP 473 (957)
Q Consensus 395 l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~ 473 (957)
+..+| .+..+++|++|++++|.+ +.+|.. .+++|+.|++++|.... ..... .
T Consensus 297 ~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~----~l~~L~~L~l~~n~~~~~~~~~~---------------------l 349 (606)
T 3vq2_A 297 IKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL----DLPFLKSLTLTMNKGSISFKKVA---------------------L 349 (606)
T ss_dssp CCCCC-CCCTTCCCSEEEEESCCC-SSCCCC----CCSSCCEEEEESCSSCEECCCCC---------------------C
T ss_pred chhhh-hccccccCCEEEcccccC-cccccC----CCCccceeeccCCcCccchhhcc---------------------C
Confidence 55555 556666677777777766 455532 22444444444331111 00001 1
Q ss_pred CCccEEEeccCCccCC--CCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEE
Q 002167 474 PHMVSFSISNNSLTGE--IPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLR 551 (957)
Q Consensus 474 ~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 551 (957)
++|+.|++++|.+++. .|..+..+++|++|++++|.+++ +|..+..+++|++|+
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~------------------------~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII------------------------MSANFMGLEELQHLD 405 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE------------------------ECCCCTTCTTCCEEE
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc------------------------chhhccCCCCCCeeE
Confidence 3444444444444433 24445555555555555555543 223344445555555
Q ss_pred ccCCcCCCCCC-ccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCC-CCccccccCCCccEEEccCCcC
Q 002167 552 LSGNHLEGPLP-PSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSG-SLPQTFAKSCVLVSLNLNGNRL 628 (957)
Q Consensus 552 Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l 628 (957)
+++|++.+..| ..+.++++|++|++++|.+++..|..+.. ++|++|++++|.+++ .+|..+..+++|+.|++++|++
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 55555554444 34555555555555555555545544433 555555555555554 2455555555555555555555
Q ss_pred ccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCC-CceEEEcCCCcCcCCCc
Q 002167 629 KGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFP-KLRIMDCSHNQLTGVLP 707 (957)
Q Consensus 629 ~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~-~L~~Ldls~N~l~g~ip 707 (957)
++..|..+.++++|++|++++|++++..|..+..+++|++|++++|++.. +|.. ...++ +|+.+++++|++.+..+
T Consensus 486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~--~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGI--LQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESC--GGGSCTTCCEEECCSCCCCCSST
T ss_pred CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHh--HhhhcccCcEEEccCCCcccCCc
Confidence 55555555555555666666555555555555555566666666665542 3322 23343 46677777777766555
Q ss_pred h
Q 002167 708 L 708 (957)
Q Consensus 708 ~ 708 (957)
.
T Consensus 563 ~ 563 (606)
T 3vq2_A 563 H 563 (606)
T ss_dssp T
T ss_pred c
Confidence 4
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-50 Score=493.23 Aligned_cols=513 Identities=19% Similarity=0.262 Sum_probs=285.0
Q ss_pred CCCCHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCC-----CCC--ccc------------cceEecCCCC
Q 002167 26 ILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKED-----ADC--CSW------------DGVTCDSATG 86 (957)
Q Consensus 26 ~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~-----~~~--c~w------------~gv~c~~~~~ 86 (957)
..+..+|+.||++||+++.++ +|+.+ .+| |.| .||.|+. .+
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-------------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~ 323 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-------------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NG 323 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-------------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TS
T ss_pred cccchHHHHHHHHHHHHcCCC-------------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CC
Confidence 345568999999999999543 46443 255 999 9999987 58
Q ss_pred cEEEEEcCCCCCccccCCCCCccCCCCCCeeeC-CCCCCCCCCCCchhhcC---CCC-----CcE------EEC-CCCcc
Q 002167 87 HVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNL-AFNDFNGSKISSGFTDQ---FPS-----LTL------LDL-CSCNF 150 (957)
Q Consensus 87 ~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~L-s~n~~~~~~i~~~~~~~---l~~-----L~~------L~L-s~n~l 150 (957)
+|++|+|+++++.|.+|+ +++.+++|++|+| ++|.+.+. .+...... +.. ++. ++. ....+
T Consensus 324 ~V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 324 RVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp CEEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CEEEEECccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 999999999999999998 9999999999999 88876554 11110000 000 000 000 00000
Q ss_pred CccCchhhhh----------cCCCCCEEEccC--CcCCCCcchhccCCCCCCEEEccCCcCCC-----------------
Q 002167 151 TGSIPPSLGN----------NITQLAYLDLSI--NSFIGHIPSSFSNLHQLRHLDLQSNNFVG----------------- 201 (957)
Q Consensus 151 ~~~ip~~l~~----------~l~~L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~L~~n~l~~----------------- 201 (957)
.+.++..+.. ....++.+.+.. |.+++ +|..|+++++|++|+|++|.+++
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 0000000000 011122222222 44444 45555555555555555555554
Q ss_pred CCchhh-hhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCC-Ccc-ccchhHhhhcc-------CCcEEECcCC
Q 002167 202 KIPASL-GNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH-FVG-EIPASLGNNIT-------QLAYLDLSSN 271 (957)
Q Consensus 202 ~~p~~l-~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~-~ip~~l~~~l~-------~L~~L~Ls~n 271 (957)
.+|..+ +.++++|++|+|++|.+.+.+|..|+++++|++|++++|+ ++| .+|..++. ++ +|++|++++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-LADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh-hhhcccccCCccEEEeeCC
Confidence 255554 2256666666666666666666666666666666666665 665 56655544 43 6666666666
Q ss_pred cCCccCcc--cccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccC-CceEecCCCCCccc
Q 002167 272 GFSGHIPS--SFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLN-LTEIYLSFSNFSGS 348 (957)
Q Consensus 272 ~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~ 348 (957)
.++ .+|. .++++++|++|++++|.+. .+| .++.+++|+.|++++|.++ .+|..+..+++ |++|++++|.+. .
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-c
Confidence 666 5665 6666666666666666666 555 5666666666666666666 56666666666 666666666665 2
Q ss_pred ccchhhhcC--CCCcEEEcccccccccc-cc---cCCCccccccccccccccCCCcChhhh-cCCCCCEEECcCCcCCCC
Q 002167 349 VELYDFAKL--KNLKVLSLSNISLSVST-KL---TANSSFPNLSALDLSACNISEFPDNLR-TQHQLELLDLSENQIGGR 421 (957)
Q Consensus 349 ~~~~~l~~l--~~L~~L~L~~~~~~~~~-~~---~~~~~l~~L~~L~L~~~~l~~lp~~l~-~~~~L~~L~Ls~n~l~~~ 421 (957)
++ ..+..+ ++|+.|++++|.+.... .. ......++|+.|++++|.+..+|..+. .+++|+.|++++|.++ .
T Consensus 634 lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ 711 (876)
T 4ecn_A 634 IP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-S 711 (876)
T ss_dssp CC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-C
T ss_pred Cc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-c
Confidence 22 112222 23555555555432110 00 000123355555555555555555443 4555555555555554 3
Q ss_pred CChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCcccc--CCCC
Q 002167 422 IPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFC--NLSS 499 (957)
Q Consensus 422 ~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~--~l~~ 499 (957)
+|..++....+ .+. -.++|+.|++++|+++ .+|..+. .+++
T Consensus 712 ip~~~~~~~~~------------------~l~------------------nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~ 754 (876)
T 4ecn_A 712 IPENSLKPKDG------------------NYK------------------NTYLLTTIDLRFNKLT-SLSDDFRATTLPY 754 (876)
T ss_dssp CCTTSSSCTTS------------------CCT------------------TGGGCCEEECCSSCCC-CCCGGGSTTTCTT
T ss_pred cChHHhccccc------------------ccc------------------ccCCccEEECCCCCCc-cchHHhhhccCCC
Confidence 43332111000 000 0024455555555555 4455554 5566
Q ss_pred CCEEEcccCcCccCCCccccc-cccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCC
Q 002167 500 IQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGN 578 (957)
Q Consensus 500 L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 578 (957)
|+.|++++|.+++ +|..+.. .+|+.|+|++|+ ++++|++.+.+|..+.++++|+.|+|++
T Consensus 755 L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGS 815 (876)
T ss_dssp CCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred cCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCC
Confidence 6666666666654 3433322 244444444443 2345777777777788888888888888
Q ss_pred CccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcC
Q 002167 579 NNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRL 628 (957)
Q Consensus 579 n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 628 (957)
|++ +.+|..+. ++|+.|+|++|++....+..+.....+..+.|.+|+.
T Consensus 816 N~L-~~Ip~~l~-~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 816 NDI-RKVDEKLT-PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp SCC-CBCCSCCC-SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CCC-CccCHhhc-CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 877 57776654 5777777777777655444444443444455555443
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-47 Score=456.80 Aligned_cols=275 Identities=19% Similarity=0.229 Sum_probs=184.7
Q ss_pred ccEEEeccC-CccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccC
Q 002167 476 MVSFSISNN-SLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSG 554 (957)
Q Consensus 476 L~~L~l~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 554 (957)
++.++++++ .+.+..|..+..+++|++|++++|.+. .+|..+...+|++|++++|.
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~---------------------- 315 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCK---------------------- 315 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCB----------------------
T ss_pred hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCc----------------------
Confidence 344555555 555566677777777777777777776 34443332244444444444
Q ss_pred CcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCC--ccccccCCCccEEEccCCcCccCC
Q 002167 555 NHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSL--PQTFAKSCVLVSLNLNGNRLKGPL 632 (957)
Q Consensus 555 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~Ls~n~l~~~~ 632 (957)
+. .+|. ..+++|++|++++|.+.+..+. ...++|++|++++|.+++.. |..+..+++|+.|++++|.+++..
T Consensus 316 --~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 316 --FG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389 (570)
T ss_dssp --CS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred --cc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc
Confidence 43 2222 2344555555555555444433 22255666666666655433 556667777777777777776543
Q ss_pred CccccCCCCCcEEeCCCCccccCcc-ccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHH
Q 002167 633 PPSLVNCQYLEVLDVGNNQIDDTFP-YWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYL 711 (957)
Q Consensus 633 p~~l~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~ 711 (957)
+. +..+++|++|++++|.+.+..| ..+..+++|++|++++| .+++.+|..+
T Consensus 390 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--------------------------~l~~~~~~~~- 441 (570)
T 2z63_A 390 SN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--------------------------HTRVAFNGIF- 441 (570)
T ss_dssp EE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS--------------------------CCEECCTTTT-
T ss_pred cc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC--------------------------cccccchhhh-
Confidence 33 7777777777777777766544 33444444444444444 3333333211
Q ss_pred hhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccC-ccCcccccccCCCcEEECC
Q 002167 712 ESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQ-RKIPEVVGKLNSLKSLNIS 790 (957)
Q Consensus 712 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls 790 (957)
..+++|+.|++++|.++ +.+|..++.+++|+.|+|+
T Consensus 442 -------------------------------------------~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 442 -------------------------------------------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp -------------------------------------------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred -------------------------------------------hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 11466778888888887 5788999999999999999
Q ss_pred CCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCCC
Q 002167 791 HNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGP 850 (957)
Q Consensus 791 ~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~ 850 (957)
+|++++..|..++.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|...
T Consensus 479 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 999999999999999999999999999999999999999999999999999999999754
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.2e-46 Score=443.13 Aligned_cols=483 Identities=19% Similarity=0.216 Sum_probs=268.5
Q ss_pred CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL 217 (957)
Q Consensus 138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L 217 (957)
++|++|++++|++++..|..+.. +++|++|++++|.+++..|..|+++++|++|++++|.+.+..|..+. ++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRA-CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG-PLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT-TCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhc-CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc-cCCCCcEE
Confidence 45566666666655444445544 66666666666666655556666666666666666666644444444 66667777
Q ss_pred EccCCCCCC-CCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCc
Q 002167 218 DLSSNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN 296 (957)
Q Consensus 218 ~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 296 (957)
++++|.+++ ..|..++++++|++|++++|++.+.+|......+++|++|++++|.+++..|..++.+++|++|+++.|.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 777666664 2455667777777777777764445554322336666666666666666666666666666666666666
Q ss_pred CcccCCccccccCcCceeeccCCcCCCCC--Cc-chhcccCCceEecCCCCCcccccchhhhcCCCCcEEEccccccccc
Q 002167 297 FVGKIPDMFTNLTQLSFLGLAYNELIGSI--PS-SIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVS 373 (957)
Q Consensus 297 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~-~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 373 (957)
+....+..+..+++|++|++++|.+++.. |. ....+++|+.|++++|.+.+...
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----------------------- 240 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF----------------------- 240 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH-----------------------
T ss_pred ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH-----------------------
Confidence 54322222234566666666666554321 00 01112233333333322221100
Q ss_pred ccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCC
Q 002167 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWK 453 (957)
Q Consensus 374 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 453 (957)
..++..+..+++|+.+++++|.+.+. ....
T Consensus 241 ----------------------~~l~~~~~~~~~L~~l~l~~~~~~~~--------------------------~~~~-- 270 (549)
T 2z81_A 241 ----------------------NELLKLLRYILELSEVEFDDCTLNGL--------------------------GDFN-- 270 (549)
T ss_dssp ----------------------HHHHGGGGGCTTCCEEEEESCEEECC--------------------------SCCC--
T ss_pred ----------------------HHHHHHhhhhcccccccccccccccc--------------------------cccc--
Confidence 01112223334444444444433211 0000
Q ss_pred ccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccc
Q 002167 454 NLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNF 533 (957)
Q Consensus 454 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l 533 (957)
......+..+++|+.|++.++.+... ....
T Consensus 271 ----------------------------------~~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~------------ 300 (549)
T 2z81_A 271 ----------------------------------PSESDVVSELGKVETVTIRRLHIPQF----YLFY------------ 300 (549)
T ss_dssp ----------------------------------CCTTTCCCCCTTCCEEEEESCBCSCG----GGSC------------
T ss_pred ----------------------------------ccchhhhhhhcccccccccccccchh----hhcc------------
Confidence 00011233455666666666654321 0000
Q ss_pred cCcCCCcCCCCCCccEEEccCCcCCCCCCccc-cCCCCCCeEEcCCCccccccCc---cccC-CcccEEECCCCcCCCCC
Q 002167 534 QGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSL-TNCVKLQFLDVGNNNLSGQIPE---CLGN-STLQVLDMRMNNFSGSL 608 (957)
Q Consensus 534 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~---~~~~-~~L~~L~Ls~n~l~~~~ 608 (957)
.++..+....+|++|++++|.+. .+|..+ ..+++|++|++++|++++.+|. +++. ++|++|++++|++++..
T Consensus 301 --~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 377 (549)
T 2z81_A 301 --DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQ 377 (549)
T ss_dssp --CCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHH
T ss_pred --cchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccc
Confidence 00111112246677777777765 455544 4677777777777777765532 2322 55666666666555432
Q ss_pred c--cccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCc
Q 002167 609 P--QTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTR 686 (957)
Q Consensus 609 p--~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 686 (957)
+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++..
T Consensus 378 ~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l------------------------------- 425 (549)
T 2z81_A 378 KTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV------------------------------- 425 (549)
T ss_dssp HHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-------------------------------
T ss_pred cchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-------------------------------
Confidence 1 23445555555555555554 3444444444444444444433211
Q ss_pred cCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcc
Q 002167 687 VPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLS 766 (957)
Q Consensus 687 ~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 766 (957)
|.. ..+.|+.|||+
T Consensus 426 --------------------~~~----------------------------------------------~~~~L~~L~Ls 439 (549)
T 2z81_A 426 --------------------KTC----------------------------------------------IPQTLEVLDVS 439 (549)
T ss_dssp --------------------CTT----------------------------------------------SCTTCSEEECC
T ss_pred --------------------cch----------------------------------------------hcCCceEEECC
Confidence 100 01345667777
Q ss_pred cCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccC
Q 002167 767 SNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPI 846 (957)
Q Consensus 767 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 846 (957)
+|++++.+ +.+++|+.|+|++|+++ .+|+ .+.+++|++|||++|++++.+|..+..+++|++|++++|+++|.+
T Consensus 440 ~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 440 NNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp SSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred CCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 77776643 46788999999999998 5676 577899999999999999988888999999999999999999998
Q ss_pred CCCCCC
Q 002167 847 PGGPQF 852 (957)
Q Consensus 847 p~~~~~ 852 (957)
|....+
T Consensus 514 ~~~~~l 519 (549)
T 2z81_A 514 PRIDYL 519 (549)
T ss_dssp HHHHHH
T ss_pred ccHHHH
Confidence 854333
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-45 Score=437.22 Aligned_cols=495 Identities=23% Similarity=0.262 Sum_probs=250.2
Q ss_pred CCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCE
Q 002167 112 PRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRH 191 (957)
Q Consensus 112 ~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 191 (957)
+++++|+|++|.+++ +++..|..+++|++|++++|++.+..|..+.. +++|++|+|++|.+++..|..|+++++|++
T Consensus 28 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCCCE--ECTTTTTTCSSCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCccCc--cChhHhhCCCCceEEECCCCcCCccCcccccC-chhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 356666666666644 22222255666666666666665333333443 666666666666655555555666666666
Q ss_pred EEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCC-CCCcccCCCCcccEEeccCCCCccccchhHhhhccCC----cEE
Q 002167 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQL----AYL 266 (957)
Q Consensus 192 L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L----~~L 266 (957)
|++++|.+.+..+..+. ++++|++|++++|.+++ .+|..++++++|++|++++|++++..+..+.. +++| +.|
T Consensus 105 L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~~~~~L 182 (570)
T 2z63_A 105 LVAVETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSL 182 (570)
T ss_dssp EECTTSCCCCSTTCSCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHTCTTCCCEE
T ss_pred ccccccccccCCCcccc-ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhccchhhhhc
Confidence 66666655522222233 55555555555555554 24555555555555555555555333333333 4444 455
Q ss_pred ECcCCcCCccCcccccCcCCCcEEEeccCcCcc-cCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCC
Q 002167 267 DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG-KIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNF 345 (957)
Q Consensus 267 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 345 (957)
++++|.+.+..|..+... +|++|++++|.... .++..+..+++++.+.+....+.. ..+++
T Consensus 183 ~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~l~--------- 244 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGNLE--------- 244 (570)
T ss_dssp ECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSSCE---------
T ss_pred ccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC--------chhhh---------
Confidence 555555554444444333 45555554442211 122223333333333322211110 00000
Q ss_pred cccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccc-cC-CCcChhhhcCCCCCEEECcCCcCCCCCC
Q 002167 346 SGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSAC-NI-SEFPDNLRTQHQLELLDLSENQIGGRIP 423 (957)
Q Consensus 346 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~l-~~lp~~l~~~~~L~~L~Ls~n~l~~~~p 423 (957)
.++...+..++++ .++.+++.++ .+ ..+|..+..+++|++|++++|.+. .+|
T Consensus 245 --~~~~~~~~~l~~l-----------------------~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~ 298 (570)
T 2z63_A 245 --KFDKSALEGLCNL-----------------------TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVK 298 (570)
T ss_dssp --ECCTTTTGGGGGS-----------------------EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCC
T ss_pred --hcchhhhcccccc-----------------------chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhh
Confidence 0111111111111 1223333333 11 334455555666666666666655 345
Q ss_pred hhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCC-CCCCccEEEeccCCccCCC--CccccCCCCC
Q 002167 424 SWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPD-LPPHMVSFSISNNSLTGEI--PSSFCNLSSI 500 (957)
Q Consensus 424 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~--p~~l~~l~~L 500 (957)
.++.. . +|+.|++++|.+..++...+++|+.|++++|.+.+..+. ..++|+.|++++|.+++.. |..+..++
T Consensus 299 ~~~~~--~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-- 373 (570)
T 2z63_A 299 DFSYN--F-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-- 373 (570)
T ss_dssp BCCSC--C-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCS--
T ss_pred hhhcc--C-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccC--
Confidence 44432 2 555666666655554444444455554444444333321 1344444444444443322 33344444
Q ss_pred CEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCC-ccccCCCCCCeEEcCCC
Q 002167 501 QYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLP-PSLTNCVKLQFLDVGNN 579 (957)
Q Consensus 501 ~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n 579 (957)
+|++|++++|++.+..+. +..+++|++|++++|.+.+..+ ..+.++++|++|++++|
T Consensus 374 ---------------------~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 431 (570)
T 2z63_A 374 ---------------------SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431 (570)
T ss_dssp ---------------------CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred ---------------------ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence 455555555544433332 4555666666666666655444 34556666666666666
Q ss_pred ccccccCccccC-CcccEEECCCCcCC-CCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcc
Q 002167 580 NLSGQIPECLGN-STLQVLDMRMNNFS-GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP 657 (957)
Q Consensus 580 ~l~~~~p~~~~~-~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 657 (957)
.+.+..|..+.. ++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..+.++++|++|++++|++++..|
T Consensus 432 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence 666655555544 66666666666665 4566666666666667776666666666666666677777777776666666
Q ss_pred ccccccccccEEEcccccccccCCC
Q 002167 658 YWLDVLLELQVLILRSNRFWGPIGD 682 (957)
Q Consensus 658 ~~l~~l~~L~~L~L~~n~~~~~~~~ 682 (957)
..+..+++|++|++++|++.+..+.
T Consensus 512 ~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 512 GIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred HHhhcccCCcEEEecCCcccCCCcc
Confidence 6666667777777777766655543
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.6e-45 Score=440.10 Aligned_cols=357 Identities=20% Similarity=0.270 Sum_probs=306.0
Q ss_pred cccCCCcChhhhcCCCCCEEECcCCcCCCC-----------------CChhhh--hhccCcceEEECCCcccCCCCCCCC
Q 002167 392 ACNISEFPDNLRTQHQLELLDLSENQIGGR-----------------IPSWMW--DIGVHTLIELDLSRNFLTSIDHLPW 452 (957)
Q Consensus 392 ~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~-----------------~p~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~~ 452 (957)
.|.++.+|..++.+++|++|++++|.+++. +|..+. ..
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l----------------------- 248 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL----------------------- 248 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-----------------------
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc-----------------------
Confidence 456666999999999999999999999874 554433 22
Q ss_pred CccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCc-Ccc-CCCccccc-------ccc
Q 002167 453 KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNS-LSG-QIPQCLGN-------STL 523 (957)
Q Consensus 453 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~-------~~L 523 (957)
++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++. .+|
T Consensus 249 ---------------------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L 307 (636)
T 4eco_A 249 ---------------------KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307 (636)
T ss_dssp ---------------------TTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTC
T ss_pred ---------------------CCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCC
Confidence 678888899999999999999999999999999998 888 78877654 699
Q ss_pred ceeecccccccCcCCC--cCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-Cc-ccEEEC
Q 002167 524 ETLDLRMNNFQGSIPQ--TNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-ST-LQVLDM 599 (957)
Q Consensus 524 ~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~-L~~L~L 599 (957)
++|++++|+++ .+|. .+..+++|++|++++|+++|.+| .+..+++|++|++++|+++ .+|..+.. ++ |++|++
T Consensus 308 ~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 308 QIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSF 384 (636)
T ss_dssp CEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEEC
T ss_pred CEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEc
Confidence 99999999999 7888 89999999999999999998899 8999999999999999998 88887766 77 999999
Q ss_pred CCCcCCCCCccccccCC--CccEEEccCCcCccCCCcccc-------CCCCCcEEeCCCCccccCccccccccccccEEE
Q 002167 600 RMNNFSGSLPQTFAKSC--VLVSLNLNGNRLKGPLPPSLV-------NCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLI 670 (957)
Q Consensus 600 s~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~p~~l~-------~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~ 670 (957)
++|.++ .+|..+..++ +|+.|++++|++++.+|..+. .+++|++|++++|+++...+..+..+++|++|+
T Consensus 385 s~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 385 AHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463 (636)
T ss_dssp CSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEE
T ss_pred cCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEE
Confidence 999999 7888887755 899999999999999998888 888999999999999965555566799999999
Q ss_pred cccccccccCCCCCCcc------CCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEE
Q 002167 671 LRSNRFWGPIGDTKTRV------PFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFL 744 (957)
Q Consensus 671 L~~n~~~~~~~~~~~~~------~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (957)
+++|++. .+|...... .+++|+.|++++|+++ .+|..+..
T Consensus 464 Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-------------------------------- 509 (636)
T 4eco_A 464 LMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA-------------------------------- 509 (636)
T ss_dssp CCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST--------------------------------
T ss_pred CCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh--------------------------------
Confidence 9999998 555443211 1238999999999998 56744210
Q ss_pred EEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEEC------CCCcCCCCCchhhhhccCCCEEECCCCcc
Q 002167 745 TMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNI------SHNNLTGCIPSSLRNLTELESLDLSSNKL 818 (957)
Q Consensus 745 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~L~~L~~L~Ls~N~l 818 (957)
..+++|+.|+|++|++++ +|..++++++|+.|+| ++|++.+.+|..++++++|++|+|++|++
T Consensus 510 ----------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 510 ----------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp ----------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred ----------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 025789999999999998 8999999999999999 56889999999999999999999999999
Q ss_pred cccCcccCcCCCCCCeEECccCcccc
Q 002167 819 AGRIPTQLASLNYLSVLNLSNNQLEG 844 (957)
Q Consensus 819 ~g~ip~~l~~l~~L~~L~ls~N~l~g 844 (957)
+.+|..+. ++|++||+++|++..
T Consensus 579 -~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 579 -RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp -CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred -CccCHhHh--CcCCEEECcCCCCcc
Confidence 78898876 799999999998774
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.5e-43 Score=428.66 Aligned_cols=388 Identities=21% Similarity=0.258 Sum_probs=228.9
Q ss_pred CCCCCCCCcccCCCCcccEEeccCCCCcc-----------------ccchhHh--hhccCCcEEECcCCcCCccCccccc
Q 002167 222 NSFSGHIPSSFSNLQQLCYLDLDDNHFVG-----------------EIPASLG--NNITQLAYLDLSSNGFSGHIPSSFS 282 (957)
Q Consensus 222 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~ip~~l~--~~l~~L~~L~Ls~n~l~~~~p~~l~ 282 (957)
|.+++ +|..|+++++|++|+|++|++++ .+|..++ . +++|++|++++|.+.+.+|..++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~-L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-CTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc-CCCCCEEECcCCCCCccChHHHh
Confidence 44554 55556666666666666666654 3666653 4 66777777777766666676677
Q ss_pred CcCCCcEEEeccCc-Ccc-cCCccccccC-------cCceeeccCCcCCCCCCc--chhcccCCceEecCCCCCcccccc
Q 002167 283 NLQQLLWLNLEYNN-FVG-KIPDMFTNLT-------QLSFLGLAYNELIGSIPS--SIFELLNLTEIYLSFSNFSGSVEL 351 (957)
Q Consensus 283 ~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~ 351 (957)
++++|++|++++|+ +++ .+|..++.++ +|++|++++|.++ .+|. .+..+++|++|++++|.+. .++
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-
Confidence 77777777777776 665 5665555554 7777777777777 6666 6777777777777777665 332
Q ss_pred hhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCC-CCEEECcCCcCCCCCChhhhhhc
Q 002167 352 YDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQ-LELLDLSENQIGGRIPSWMWDIG 430 (957)
Q Consensus 352 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~-L~~L~Ls~n~l~~~~p~~~~~~~ 430 (957)
.+..++ +|+.|++++|.+..+|..+..+++ |+.|++++|.++ .+|..+....
T Consensus 590 -~~~~L~-------------------------~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 590 -AFGTNV-------------------------KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp -CCCTTS-------------------------EESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred -hhcCCC-------------------------cceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 333333 344444444444556666666666 777777777766 5565544333
Q ss_pred cCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCcc-ccCCCCCCEEEcccCc
Q 002167 431 VHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSS-FCNLSSIQYLDLSNNS 509 (957)
Q Consensus 431 ~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 509 (957)
.++|+.|++++|.+++..+.....+..+ ..++|+.|++++|.++ .+|.. +..+++|+.|++++|.
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~-------------~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDY-------------KGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTC-------------CCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC
T ss_pred cCCCCEEECcCCcCCCccccchhhhccc-------------cCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc
Confidence 3335555555555544321100000000 0135666777777766 34443 3467777777777777
Q ss_pred CccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCcccc--CCCCCCeEEcCCCccccccCc
Q 002167 510 LSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLT--NCVKLQFLDVGNNNLSGQIPE 587 (957)
Q Consensus 510 l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~ 587 (957)
++ .+|...... .+....++++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|.
T Consensus 709 L~-~ip~~~~~~---------------~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~ 770 (876)
T 4ecn_A 709 MT-SIPENSLKP---------------KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPT 770 (876)
T ss_dssp CS-CCCTTSSSC---------------TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred CC-ccChHHhcc---------------ccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cch
Confidence 77 455432210 0000111224555555555444 3444443 45555555555555543 344
Q ss_pred cccC-CcccEEEC------CCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccc
Q 002167 588 CLGN-STLQVLDM------RMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWL 660 (957)
Q Consensus 588 ~~~~-~~L~~L~L------s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l 660 (957)
.+.. ++|+.|+| ++|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|++++|++....+..+
T Consensus 771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 3333 44555555 45888888888888899999999999998 67887765 589999999998887766666
Q ss_pred cccccccEEEcccccc
Q 002167 661 DVLLELQVLILRSNRF 676 (957)
Q Consensus 661 ~~l~~L~~L~L~~n~~ 676 (957)
.....+..+.|.+|+.
T Consensus 848 ~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 848 CPYIEAGMYVLLYDKT 863 (876)
T ss_dssp HHHHHTTCCEEECCTT
T ss_pred cccccchheeecCCCc
Confidence 6555555566655543
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.1e-43 Score=411.81 Aligned_cols=462 Identities=21% Similarity=0.212 Sum_probs=249.6
Q ss_pred CeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEc
Q 002167 115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL 194 (957)
Q Consensus 115 ~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 194 (957)
++||+++|.++. +|..+ . ++|++|++++|.+.+..|..+.. +++|++|+|++|.+++..|..|+++++|++|++
T Consensus 3 ~~l~ls~n~l~~--ip~~~-~--~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIH--VPKDL-S--QKTTILNISQNYISELWTSDILS-LSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSS--CCCSC-C--TTCSEEECCSSCCCCCCHHHHTT-CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCccc--ccccc-c--ccccEEECCCCcccccChhhccc-cccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 466777777653 56555 2 66777777777766444445554 667777777777666666666666666777776
Q ss_pred cCCcCCCCCchhhhhCCCCCcEEEccCCCCCC-CCCcccCCCCcccEEeccCCCCccccchhHhhhccCC--cEEECcCC
Q 002167 195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSG-HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQL--AYLDLSSN 271 (957)
Q Consensus 195 ~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L--~~L~Ls~n 271 (957)
++|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|++++ ..+.. +++| ++|++++|
T Consensus 77 s~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~-l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 77 SHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLP-IAHLNISKVLLVLG 148 (520)
T ss_dssp CSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGG-GTTSCEEEEEEEEC
T ss_pred CCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccc-cccceeeEEEeecc
Confidence 666665 45544 46666666666666654 345566666666666666666553 12222 4444 55555555
Q ss_pred cC--CccCcccccCcC-CCcEEEeccCcCcccCCc-cccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcc
Q 002167 272 GF--SGHIPSSFSNLQ-QLLWLNLEYNNFVGKIPD-MFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSG 347 (957)
Q Consensus 272 ~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 347 (957)
.+ .+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|....... .+.+
T Consensus 149 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----------------~~~~ 211 (520)
T 2z7x_B 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-----------------YFLS 211 (520)
T ss_dssp TTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-----------------HHHH
T ss_pred cccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-----------------eeec
Confidence 55 444444444433 122233333333332221 22333333333333332000000 0111
Q ss_pred cccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhh
Q 002167 348 SVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMW 427 (957)
Q Consensus 348 ~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 427 (957)
.++ .+..+++|+. |++++|.+++..+..+.
T Consensus 212 ~~~--~l~~l~~L~~------------------------------------------------L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 212 ILA--KLQTNPKLSN------------------------------------------------LTLNNIETTWNSFIRIL 241 (520)
T ss_dssp HHH--GGGGCTTCCE------------------------------------------------EEEEEEEEEHHHHHHHH
T ss_pred chh--hhccccchhh------------------------------------------------ccccccccCHHHHHHHH
Confidence 111 2223333333 33333332221111110
Q ss_pred hh-ccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccc-----cCCCCCC
Q 002167 428 DI-GVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSF-----CNLSSIQ 501 (957)
Q Consensus 428 ~~-~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~ 501 (957)
.. . .++|++|++++|.+++.+|..+ ..+++|+
T Consensus 242 ~~~~------------------------------------------~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~ 279 (520)
T 2z7x_B 242 QLVW------------------------------------------HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279 (520)
T ss_dssp HHHH------------------------------------------TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEE
T ss_pred HHhh------------------------------------------hCcccEEEeecccccCccccchhhcccccCceeE
Confidence 00 0 0123333333333333333333 4455555
Q ss_pred EEEcccCcCccCCCc-cc----cccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEc
Q 002167 502 YLDLSNNSLSGQIPQ-CL----GNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDV 576 (957)
Q Consensus 502 ~L~L~~n~l~~~~p~-~~----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 576 (957)
.+++++|.+ .+|. .+ ...+|+.|++++|.+.+... ...+++|++|++++|++++..|..+..+++|++|++
T Consensus 280 ~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 355 (520)
T 2z7x_B 280 IHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355 (520)
T ss_dssp EEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred eccccccce--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence 555555555 3331 11 11245555555555443211 134566777777777777666666777777777777
Q ss_pred CCCcccc--ccCccccC-CcccEEECCCCcCCCCCcc-ccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCcc
Q 002167 577 GNNNLSG--QIPECLGN-STLQVLDMRMNNFSGSLPQ-TFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQI 652 (957)
Q Consensus 577 s~n~l~~--~~p~~~~~-~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l 652 (957)
++|++++ .+|..+.. ++|++|++++|.+++.+|. .+..+++|+.|++++|++++..|..+. ++|+.|++++|++
T Consensus 356 ~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l 433 (520)
T 2z7x_B 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI 433 (520)
T ss_dssp CSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCC
T ss_pred cCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcc
Confidence 7777765 44454544 6777777777777764554 366677777777777777766665554 6777777777777
Q ss_pred ccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCch
Q 002167 653 DDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPL 708 (957)
Q Consensus 653 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~ 708 (957)
+ .+|.++..+++|++|++++|++.+ +|.. ....+++|+.+++++|++++..+.
T Consensus 434 ~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~-~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 434 K-SIPKQVVKLEALQELNVASNQLKS-VPDG-IFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp C-CCCGGGGGCTTCCEEECCSSCCCC-CCTT-TTTTCTTCCEEECCSSCBCCCHHH
T ss_pred c-ccchhhhcCCCCCEEECCCCcCCc-cCHH-HhccCCcccEEECcCCCCcccCCc
Confidence 7 566666677777777777777763 3333 235577888888888888887664
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=409.48 Aligned_cols=445 Identities=21% Similarity=0.230 Sum_probs=283.6
Q ss_pred cEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEcc
Q 002167 141 TLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220 (957)
Q Consensus 141 ~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls 220 (957)
++||+++|+++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------- 58 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-------------------- 58 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC--------------------
T ss_pred ceEecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccC--------------------
Confidence 34566666665 4555443 45555555555555554455555555555555555554
Q ss_pred CCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCc-cCcccccCcCCCcEEEeccCcCcc
Q 002167 221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSG-HIPSSFSNLQQLLWLNLEYNNFVG 299 (957)
Q Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~ 299 (957)
+..|..|+++++|++|++++|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+
T Consensus 59 -----~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 59 -----YLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp -----EEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred -----CcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence 333444444444455555554444 34443 25555555555555554 345555555555555555555543
Q ss_pred cCCccccccCcC--ceeeccCCcC--CCCCCcchhccc-CCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccc
Q 002167 300 KIPDMFTNLTQL--SFLGLAYNEL--IGSIPSSIFELL-NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVST 374 (957)
Q Consensus 300 ~~p~~l~~l~~L--~~L~L~~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 374 (957)
..+..+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.+....+..+++|+.+++++|.
T Consensus 130 ---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~----- 201 (520)
T 2z7x_B 130 ---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL----- 201 (520)
T ss_dssp ---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC-----
T ss_pred ---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccc-----
Confidence 234445555 6666666665 455555554443 222344555555443333333333333333333332
Q ss_pred cccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCc
Q 002167 375 KLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKN 454 (957)
Q Consensus 375 ~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 454 (957)
...-... +.+.+| .+...
T Consensus 202 --------------------~~~~~~~----------------~~~~~~-~l~~l------------------------- 219 (520)
T 2z7x_B 202 --------------------EDNKCSY----------------FLSILA-KLQTN------------------------- 219 (520)
T ss_dssp --------------------STTTTHH----------------HHHHHH-GGGGC-------------------------
T ss_pred --------------------cccccce----------------eecchh-hhccc-------------------------
Confidence 0000000 111111 12111
Q ss_pred cceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccc---cCCCCCCEEEcccCcCccCCCccc-----cc-cccce
Q 002167 455 LEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSF---CNLSSIQYLDLSNNSLSGQIPQCL-----GN-STLET 525 (957)
Q Consensus 455 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~~p~~~-----~~-~~L~~ 525 (957)
++|+.|++++|.+++..+..+ ...++|++|++++|.++|.+|..+ .. ..|+.
T Consensus 220 -------------------~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~ 280 (520)
T 2z7x_B 220 -------------------PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSI 280 (520)
T ss_dssp -------------------TTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEE
T ss_pred -------------------cchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEe
Confidence 455555665555544322111 124699999999999999998876 33 38999
Q ss_pred eecccccccCcCC-CcCCCC---CCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECC
Q 002167 526 LDLRMNNFQGSIP-QTNAKG---CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMR 600 (957)
Q Consensus 526 L~L~~n~l~~~~~-~~~~~l---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls 600 (957)
+++++|.+ .+| ..+..+ .+|+.|++++|.+.... ....+++|++|++++|++++.+|..++. ++|++|+++
T Consensus 281 l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 356 (520)
T 2z7x_B 281 HQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356 (520)
T ss_dssp EEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred ccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence 99999998 455 333332 67999999999987543 1268899999999999999988988876 999999999
Q ss_pred CCcCCC--CCccccccCCCccEEEccCCcCccCCCc-cccCCCCCcEEeCCCCccccCccccccccccccEEEccccccc
Q 002167 601 MNNFSG--SLPQTFAKSCVLVSLNLNGNRLKGPLPP-SLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFW 677 (957)
Q Consensus 601 ~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~ 677 (957)
+|++++ .+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|++.
T Consensus 357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK 434 (520)
T ss_dssp SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC
T ss_pred CCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc
Confidence 999997 6678899999999999999999986775 488999999999999999988877665 79999999999987
Q ss_pred ccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhcc
Q 002167 678 GPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAM 717 (957)
Q Consensus 678 ~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l 717 (957)
.+|... ..+++|+.|++++|++++ +|...+..++.+
T Consensus 435 -~ip~~~--~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L 470 (520)
T 2z7x_B 435 -SIPKQV--VKLEALQELNVASNQLKS-VPDGIFDRLTSL 470 (520)
T ss_dssp -CCCGGG--GGCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred -ccchhh--hcCCCCCEEECCCCcCCc-cCHHHhccCCcc
Confidence 555544 378999999999999994 665544444444
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.3e-42 Score=413.59 Aligned_cols=531 Identities=22% Similarity=0.209 Sum_probs=322.8
Q ss_pred eeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCch-hhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEcc
Q 002167 117 LNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPP-SLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQ 195 (957)
Q Consensus 117 L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~-~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 195 (957)
.+-++..++. +|+.+ -+++++|||++|+|+ .+|+ ++.. +++|++|+|++|.+++..|.+|.++++|++|+|+
T Consensus 36 ~~c~~~~l~~--vP~~l---p~~~~~LdLs~N~i~-~l~~~~f~~-l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 36 YQCMELNFYK--IPDNL---PFSTKNLDLSFNPLR-HLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp EECTTSCCSS--CCSSS---CTTCCEEECTTSCCC-EECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred EECCCCCcCc--cCCCC---CcCCCEEEeeCCCCC-CCCHHHHhC-CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEcc
Confidence 3444444543 67655 357899999999998 5554 5555 9999999999999988778889999999999999
Q ss_pred CCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCcc-ccchhHhhhccCCcEEECcCCcCC
Q 002167 196 SNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG-EIPASLGNNITQLAYLDLSSNGFS 274 (957)
Q Consensus 196 ~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~l~~~l~~L~~L~Ls~n~l~ 274 (957)
+|+++ .+|...+.++++|++|++++|++++..+..|+++++|++|++++|++++ .+|..+.. +++|++|++++|.++
T Consensus 109 ~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~-l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 109 GNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN-LTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-CTTCCEEECCSSCCC
T ss_pred CCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhcc-chhhhhhcccCcccc
Confidence 99988 5665554589999999999999987777788999999999999998874 34555555 888999999988888
Q ss_pred ccCcccccCcCCCc----EEEeccCcCcccCCccccccCcCceeeccCCcCCCC-CCcchhcccCCceEecCCCCCcccc
Q 002167 275 GHIPSSFSNLQQLL----WLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS-IPSSIFELLNLTEIYLSFSNFSGSV 349 (957)
Q Consensus 275 ~~~p~~l~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~ 349 (957)
+..+..+..+.+++ .++++.|.+....+..+ ....++.+++.+|..... .+..+..+..++...+..+......
T Consensus 187 ~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 265 (635)
T 4g8a_A 187 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 265 (635)
T ss_dssp EECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred ccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccc
Confidence 87777777665443 56777777765444433 334456666666644321 1222334444444443322211100
Q ss_pred cchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccC----CCcChhhhcCCCCCEEECcCCcCCCCCChh
Q 002167 350 ELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNI----SEFPDNLRTQHQLELLDLSENQIGGRIPSW 425 (957)
Q Consensus 350 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l----~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~ 425 (957)
.. .............+....+..+.. ..++..+....+++.+++.++.+....+
T Consensus 266 ~l--------------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-- 323 (635)
T 4g8a_A 266 NL--------------------EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-- 323 (635)
T ss_dssp CC--------------------SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--
T ss_pred cc--------------------ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--
Confidence 00 000001111122222222222211 1223334455566666666665543211
Q ss_pred hhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEc
Q 002167 426 MWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDL 505 (957)
Q Consensus 426 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 505 (957)
+. ....++.|++.+|.+..+....+..++.+++..|...... ....+++|+.+++
T Consensus 324 ~~--~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~-----------------------~~~~l~~L~~L~l 378 (635)
T 4g8a_A 324 FS--YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-----------------------SEVDLPSLEFLDL 378 (635)
T ss_dssp GG--SCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC-----------------------CCCBCTTCCEEEC
T ss_pred cc--cchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc-----------------------ccccccccccchh
Confidence 11 1245556666666555555444444444444444333222 2234555666666
Q ss_pred ccCcCccC--CCccc-cccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCC-CccccCCCCCCeEEcCCCcc
Q 002167 506 SNNSLSGQ--IPQCL-GNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPL-PPSLTNCVKLQFLDVGNNNL 581 (957)
Q Consensus 506 ~~n~l~~~--~p~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l 581 (957)
++|.+... .+... ...+|+.+++..|.... .+..+..+++|+.+++++|...... +..+..+++++.++++.|.+
T Consensus 379 s~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l 457 (635)
T 4g8a_A 379 SRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457 (635)
T ss_dssp CSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC
T ss_pred hccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence 66655421 12111 12256666666555543 2334555666666666666554433 23456666777777777777
Q ss_pred ccccCccccC-CcccEEECCCCcCC-CCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcccc
Q 002167 582 SGQIPECLGN-STLQVLDMRMNNFS-GSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYW 659 (957)
Q Consensus 582 ~~~~p~~~~~-~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~ 659 (957)
.+..+..+.. ++|++|++++|.+. +..|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..
T Consensus 458 ~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~ 537 (635)
T 4g8a_A 458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537 (635)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG
T ss_pred ccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH
Confidence 6666665544 66777777776533 345666777777777777777777666777777777777777777777776777
Q ss_pred ccccccccEEEcccccccccCCCCCCccCC-CCceEEEcCCCcCcCCCc
Q 002167 660 LDVLLELQVLILRSNRFWGPIGDTKTRVPF-PKLRIMDCSHNQLTGVLP 707 (957)
Q Consensus 660 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l-~~L~~Ldls~N~l~g~ip 707 (957)
|..+++|++|+|++|++.+..+... ..+ ++|+.|++++|+++..-.
T Consensus 538 ~~~l~~L~~L~Ls~N~l~~~~~~~l--~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 538 YKCLNSLQVLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp GTTCTTCCEEECTTSCCCBCCSSCT--TCCCTTCCEEECTTCCBCCSGG
T ss_pred HhCCCCCCEEECCCCcCCCCCHHHH--HhhhCcCCEEEeeCCCCcccCC
Confidence 7777777777777777766665544 233 567788888888776543
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-42 Score=411.18 Aligned_cols=489 Identities=22% Similarity=0.243 Sum_probs=309.8
Q ss_pred CccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCc
Q 002167 73 CCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTG 152 (957)
Q Consensus 73 ~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 152 (957)
.|.|.|+ |+.. +++++ .+|+ .+ .++|++|+|++|.+++. .|..+ ..+++|++|++++|++.+
T Consensus 3 ~C~~~~~-c~~~----------~~~l~-~ip~--~~--~~~L~~L~Ls~n~l~~~-~~~~~-~~l~~L~~L~Ls~n~i~~ 64 (549)
T 2z81_A 3 SCDASGV-CDGR----------SRSFT-SIPS--GL--TAAMKSLDLSFNKITYI-GHGDL-RACANLQVLILKSSRINT 64 (549)
T ss_dssp EECTTSE-EECT----------TSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CSSTT-SSCTTCCEEECTTSCCCE
T ss_pred cCCCCce-EECC----------CCccc-cccc--cC--CCCccEEECcCCccCcc-Chhhh-hcCCcccEEECCCCCcCc
Confidence 4999998 8543 33443 3444 23 26888888888888653 34444 888888888888888886
Q ss_pred cCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCC-CCchhhhhCCCCCcEEEccCCCCCCCCC-c
Q 002167 153 SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVG-KIPASLGNNITQLAYLDLSSNSFSGHIP-S 230 (957)
Q Consensus 153 ~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~~l~~L~~L~Ls~n~l~~~~p-~ 230 (957)
..|..+.. +++|++|+|++|.+.+..|..|+++++|++|++++|.+.+ ..|..+. ++++|++|++++|.+.+.+| .
T Consensus 65 ~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~ 142 (549)
T 2z81_A 65 IEGDAFYS-LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRI 142 (549)
T ss_dssp ECTTTTTT-CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT-TCTTCCEEEEEESSSCCEECTT
T ss_pred cChhhccc-cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhh-ccCCccEEECCCCccccccCHh
Confidence 55566665 8888888888888888777778888888888888888875 3455555 78888888888888444444 5
Q ss_pred ccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCccc-ccCcCCCcEEEeccCcCcccC---Ccccc
Q 002167 231 SFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSS-FSNLQQLLWLNLEYNNFVGKI---PDMFT 306 (957)
Q Consensus 231 ~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~---p~~l~ 306 (957)
.++++++|++|++++|++++.+|..+.. +++|++|++++|.+.. +|.. +..+++|++|++++|.+.+.. .....
T Consensus 143 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 220 (549)
T 2z81_A 143 DFAGLTSLNELEIKALSLRNYQSQSLKS-IRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220 (549)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTT-CSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCC
T ss_pred hhhcccccCeeeccCCcccccChhhhhc-cccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhh
Confidence 7888888888888888888777877776 8888888888888763 3333 456888888888888887642 12234
Q ss_pred ccCcCceeeccCCcCCCCCCc----chhcccCCceEecCCCCCcccccc-----hhhhcCCCCcEEEccccccccccccc
Q 002167 307 NLTQLSFLGLAYNELIGSIPS----SIFELLNLTEIYLSFSNFSGSVEL-----YDFAKLKNLKVLSLSNISLSVSTKLT 377 (957)
Q Consensus 307 ~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~~~-----~~l~~l~~L~~L~L~~~~~~~~~~~~ 377 (957)
.+++|+.|++++|.+++..+. .+..+++|+.+++++|.+.+.... ..+..+++|+.|++.++.+.......
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 300 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSC
T ss_pred hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcc
Confidence 577888888888887654333 334567788888888776543211 22345566666666665532211110
Q ss_pred CC----CccccccccccccccCCCcChhh-hcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCC
Q 002167 378 AN----SSFPNLSALDLSACNISEFPDNL-RTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPW 452 (957)
Q Consensus 378 ~~----~~l~~L~~L~L~~~~l~~lp~~l-~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 452 (957)
.. ...++|+.|++++|.++.+|..+ ..+++|++|++++|++++.+|..
T Consensus 301 ~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------------------------- 353 (549)
T 2z81_A 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN--------------------------- 353 (549)
T ss_dssp CCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHH---------------------------
T ss_pred cchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccc---------------------------
Confidence 00 01233444444444444444433 23444444444444443322211
Q ss_pred CccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCC--ccc-cccccceeecc
Q 002167 453 KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIP--QCL-GNSTLETLDLR 529 (957)
Q Consensus 453 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p--~~~-~~~~L~~L~L~ 529 (957)
+..+..+++|++|++++|.+++..+ ..+ ...+|++|+++
T Consensus 354 --------------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 354 --------------------------------------SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp --------------------------------------HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred --------------------------------------hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence 0112333344444444444432111 111 11244444444
Q ss_pred cccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCc
Q 002167 530 MNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLP 609 (957)
Q Consensus 530 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p 609 (957)
+|+++ .+|..+..+++|++|++++|++++ +|..+ .++|++|++++|++++.++ ..++|++|++++|+++ .+|
T Consensus 396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~~---~l~~L~~L~Ls~N~l~-~ip 467 (549)
T 2z81_A 396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFSL---FLPRLQELYISRNKLK-TLP 467 (549)
T ss_dssp TCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-SCC
T ss_pred CCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhcc---cCChhcEEECCCCccC-cCC
Confidence 44444 344445555666666666666653 22222 2467777777777765331 2367888888888887 555
Q ss_pred cccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcc
Q 002167 610 QTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP 657 (957)
Q Consensus 610 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 657 (957)
. ...+++|+.|+|++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 468 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 468 D-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp C-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred C-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 5 4567888888888888888878888888899999999998887766
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-41 Score=407.78 Aligned_cols=536 Identities=22% Similarity=0.224 Sum_probs=309.5
Q ss_pred EEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCC
Q 002167 168 LDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH 247 (957)
Q Consensus 168 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 247 (957)
.+-++-.++ .+|..+. +++++|+|++|++++..+..+. ++++|++|+|++|++++..|.+|.++++|++|+|++|+
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~-~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHh-CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 343443444 4554332 4678888888877733333444 77888888888888776666777778888888888887
Q ss_pred CccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcc-cCCccccccCcCceeeccCCcCCCCCC
Q 002167 248 FVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG-KIPDMFTNLTQLSFLGLAYNELIGSIP 326 (957)
Q Consensus 248 l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p 326 (957)
++ .+|...+.++++|++|++++|.+++..+..|+++++|++|++++|.+.+ ..|..++.+++|++|++++|++++..+
T Consensus 112 l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 112 IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 77 5555544447778888887777776666667777777777777777764 346667777777777777777776666
Q ss_pred cchhcccCCc----eEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCCcChhh
Q 002167 327 SSIFELLNLT----EIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNL 402 (957)
Q Consensus 327 ~~l~~l~~L~----~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l 402 (957)
..+..+.+++ .++++.|.+....+ ..+ ....++.+++.++.... ...+..+
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~-~~~-~~~~~~~l~l~~n~~~~-----------------------~~~~~~~ 245 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAF-KEIRLHKLTLRNNFDSL-----------------------NVMKTCI 245 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECT-TTT-TTCEEEEEEEESCCSSH-----------------------HHHHHHH
T ss_pred ccccchhhhhhhhhhhhcccCcccccCc-ccc-cchhhhhhhhhcccccc-----------------------cccchhh
Confidence 6665554433 34444444432111 100 11112222222221000 0111223
Q ss_pred hcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEec
Q 002167 403 RTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSIS 482 (957)
Q Consensus 403 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~ 482 (957)
..+..++...+..+..... ..+.......+..+ ..+....+.
T Consensus 246 ~~l~~l~~~~l~~~~~~~~--------------------~~l~~~~~~~~~~~------------------~~l~~~~l~ 287 (635)
T 4g8a_A 246 QGLAGLEVHRLVLGEFRNE--------------------GNLEKFDKSALEGL------------------CNLTIEEFR 287 (635)
T ss_dssp HTTTTCEEEEEEEECCTTS--------------------CCCSCCCTTTTGGG------------------GGSEEEEEE
T ss_pred cCCcccccccccccccccc--------------------cccccccccccccc------------------cchhhhhhh
Confidence 3333333333322111100 00000000111110 111122221
Q ss_pred cCCc---cCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCC
Q 002167 483 NNSL---TGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEG 559 (957)
Q Consensus 483 ~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 559 (957)
.+.. ....+..+..+.+++.+++.++.+.+. +.......++.|++.+|++.+..+. .+..|+.+++.+|.+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC-GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccc-cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCC
Confidence 1111 111223344455666666666665532 2222223556666666555433322 23455666666665543
Q ss_pred CCCccccCCCCCCeEEcCCCcccc--ccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCC-cc
Q 002167 560 PLPPSLTNCVKLQFLDVGNNNLSG--QIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLP-PS 635 (957)
Q Consensus 560 ~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~ 635 (957)
.. ....+++|+.|++++|.+.. ..+..... .+|+.++++.|.+.. .+..+..+++|+.+++++|+.....+ ..
T Consensus 364 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 364 AF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp BC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred Cc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccc
Confidence 22 23355666666666666542 22222222 455666666555542 23345555566666666555544433 34
Q ss_pred ccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCC-CchHHHhhh
Q 002167 636 LVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV-LPLWYLESF 714 (957)
Q Consensus 636 l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~-ip~~~~~~l 714 (957)
+..+++++.+++++|.+.+..+..+..++ .++.+++++|++.+. +|..
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~--------------------------~L~~L~Ls~N~~~~~~~~~~----- 489 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLS--------------------------SLEVLKMAGNSFQENFLPDI----- 489 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCT--------------------------TCCEEECTTCEEGGGEECSC-----
T ss_pred cccccccccccccccccccccccccccch--------------------------hhhhhhhhhcccccccCchh-----
Confidence 55555566666666655555554444444 445555555543322 2211
Q ss_pred hccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcC
Q 002167 715 KAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNL 794 (957)
Q Consensus 715 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 794 (957)
+..+++|+.|||++|++++.+|..|+++++|++|+|++|++
T Consensus 490 ---------------------------------------~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 490 ---------------------------------------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp ---------------------------------------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ---------------------------------------hhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 11257889999999999999999999999999999999999
Q ss_pred CCCCchhhhhccCCCEEECCCCcccccCcccCcCC-CCCCeEECccCcccccCCC
Q 002167 795 TGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASL-NYLSVLNLSNNQLEGPIPG 848 (957)
Q Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~g~ip~ 848 (957)
++..|..|+++++|++|||++|++++.+|..+..+ ++|++|++++|+++|.|..
T Consensus 531 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 99999999999999999999999999999999998 7899999999999998864
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.6e-40 Score=388.17 Aligned_cols=467 Identities=21% Similarity=0.227 Sum_probs=253.1
Q ss_pred CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL 217 (957)
Q Consensus 138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L 217 (957)
...+++++++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..+. ++++|++|
T Consensus 31 ~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L 105 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYL 105 (562)
T ss_dssp --CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT-TCTTCCEE
T ss_pred CCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC-CCCCCCEE
Confidence 33456666666665 4555442 4566666666665555555555555555555555555543344443 55555555
Q ss_pred EccCCCCCCCCCcccCCCCcccEEeccCCCCcc-ccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCc
Q 002167 218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG-EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN 296 (957)
Q Consensus 218 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 296 (957)
++++|.++ .+|.. .+++|++|++++|++++ .+|..+.. +++|++|++++|.+.+. .+..+++|
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~-l~~L~~L~L~~n~l~~~---~~~~l~~L--------- 169 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGN-LTKLTFLGLSAAKFRQL---DLLPVAHL--------- 169 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGG-CTTCCEEEEECSBCCTT---TTGGGTTS---------
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcc-cCcccEEecCCCccccC---chhhhhhc---------
Confidence 55555554 33333 45555555555555542 12233333 45555555555544431 22233333
Q ss_pred CcccCCccccccCcCceeeccCCcC--CCCCCcchhccc-CCceEecCCCCCcccccchhhhcCCCCcEEEccccccccc
Q 002167 297 FVGKIPDMFTNLTQLSFLGLAYNEL--IGSIPSSIFELL-NLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVS 373 (957)
Q Consensus 297 l~~~~p~~l~~l~~L~~L~L~~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~ 373 (957)
+|++|++++|.+ ++..|..+..+. ..-.++++.|.+.+.+....+..+++|+.+++++|.....
T Consensus 170 -------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 236 (562)
T 3a79_B 170 -------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236 (562)
T ss_dssp -------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH
T ss_pred -------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc
Confidence 114444444444 444444443322 0112344444444333333333444444444444321000
Q ss_pred ccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhh-hccCcceEEECCCcccCCCCCCCC
Q 002167 374 TKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWD-IGVHTLIELDLSRNFLTSIDHLPW 452 (957)
Q Consensus 374 ~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~ 452 (957)
.+...+..+..++.|+.++++++.+.+.....+.. ..
T Consensus 237 --------------------~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~---------------------- 274 (562)
T 3a79_B 237 --------------------RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW---------------------- 274 (562)
T ss_dssp --------------------HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT----------------------
T ss_pred --------------------hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh----------------------
Confidence 00111223445555555655555444221111100 00
Q ss_pred CccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccc-----cCCCCCCEEEcccCcCccCCCcc-----ccccc
Q 002167 453 KNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSF-----CNLSSIQYLDLSNNSLSGQIPQC-----LGNST 522 (957)
Q Consensus 453 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~~p~~-----~~~~~ 522 (957)
.++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+|.. +...+
T Consensus 275 --------------------~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 275 --------------------PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMN 332 (562)
T ss_dssp --------------------TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCC
T ss_pred --------------------cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCc
Confidence 0234444444444444444444 4444455555555554 33321 11235
Q ss_pred cceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCcccc--ccCccccC-CcccEEEC
Q 002167 523 LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG--QIPECLGN-STLQVLDM 599 (957)
Q Consensus 523 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~-~~L~~L~L 599 (957)
|++|++++|.+..... ...+++|++|++++|++++..|..+.++++|++|++++|++++ .+|..+.. ++|++|++
T Consensus 333 L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l 410 (562)
T 3a79_B 333 IKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410 (562)
T ss_dssp CSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred ceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence 6677777766643221 1456777888888888777777777778888888888887775 33444544 77888888
Q ss_pred CCCcCCCCCcc-ccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccc
Q 002167 600 RMNNFSGSLPQ-TFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWG 678 (957)
Q Consensus 600 s~n~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~ 678 (957)
++|.+++.+|. .+..+++|+.|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++.+
T Consensus 411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS 487 (562)
T ss_dssp TTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC
T ss_pred CCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC
Confidence 88888774544 477778888888888888776665554 67888888888877 456666688888888888888774
Q ss_pred cCCCCCCccCCCCceEEEcCCCcCcCCCchH
Q 002167 679 PIGDTKTRVPFPKLRIMDCSHNQLTGVLPLW 709 (957)
Q Consensus 679 ~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~ 709 (957)
+|.. ....+++|+.+++++|++.+..|..
T Consensus 488 -l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 488 -VPDG-VFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp -CCTT-STTTCTTCCCEECCSCCBCCCHHHH
T ss_pred -CCHH-HHhcCCCCCEEEecCCCcCCCcchH
Confidence 4433 2356788899999999998877753
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.9e-40 Score=388.03 Aligned_cols=196 Identities=20% Similarity=0.249 Sum_probs=156.5
Q ss_pred CCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCC
Q 002167 111 LPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLR 190 (957)
Q Consensus 111 l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 190 (957)
+...+++++++|.+++ +|..+ .++|++|++++|.+.+..|..+.. +++|++|+|++|.+++..|..|.++++|+
T Consensus 30 ~~~~~~l~ls~~~L~~--ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 103 (562)
T 3a79_B 30 NELESMVDYSNRNLTH--VPKDL---PPRTKALSLSQNSISELRMPDISF-LSELRVLRLSHNRIRSLDFHVFLFNQDLE 103 (562)
T ss_dssp ---CCEEECTTSCCCS--CCTTS---CTTCCEEECCSSCCCCCCGGGTTT-CTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred cCCCcEEEcCCCCCcc--CCCCC---CCCcCEEECCCCCccccChhhhcc-CCCccEEECCCCCCCcCCHHHhCCCCCCC
Confidence 4455899999999975 78766 389999999999999555567776 99999999999999988899999999999
Q ss_pred EEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCC-CCcccCCCCcccEEeccCCCCccccchhHhhhccCC--cEEE
Q 002167 191 HLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGH-IPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQL--AYLD 267 (957)
Q Consensus 191 ~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L--~~L~ 267 (957)
+|++++|.++ .+|.. .+++|++|++++|.+++. .|..|+++++|++|++++|++++. .+.. +++| ++|+
T Consensus 104 ~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~-l~~L~L~~L~ 175 (562)
T 3a79_B 104 YLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLP-VAHLHLSCIL 175 (562)
T ss_dssp EEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGG-GTTSCEEEEE
T ss_pred EEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhh-hhhceeeEEE
Confidence 9999999998 77876 799999999999999873 468999999999999999999852 2332 5666 9999
Q ss_pred CcCCcC--CccCcccccCcC-CCcEEEeccCcCcccCCc-cccccCcCceeeccCCc
Q 002167 268 LSSNGF--SGHIPSSFSNLQ-QLLWLNLEYNNFVGKIPD-MFTNLTQLSFLGLAYNE 320 (957)
Q Consensus 268 Ls~n~l--~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~ 320 (957)
+++|.+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 232 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS
T ss_pred eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccc
Confidence 999999 888888877764 122456677776654443 34456666667666664
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.7e-40 Score=360.94 Aligned_cols=293 Identities=32% Similarity=0.515 Sum_probs=237.3
Q ss_pred CCCHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCCCCCCcc--ccceEecCCC--CcEEEEEcCCCCCcc--
Q 002167 27 LCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKEDADCCS--WDGVTCDSAT--GHVIGLDLSCSWLHG-- 100 (957)
Q Consensus 27 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~~~~~c~--w~gv~c~~~~--~~v~~l~L~~~~l~g-- 100 (957)
.|.++|++||++||+++.++. .+++|..+++||. |.||.|+..+ ++|++|+|+++.+.|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~---------------~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~ 66 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT---------------TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPY 66 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG---------------GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCE
T ss_pred CCCHHHHHHHHHHHHhcCCcc---------------cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCc
Confidence 599999999999999996542 5789988889998 9999998655 799999999999998
Q ss_pred ccCCCCCccCCCCCCeeeCCC-CCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCc
Q 002167 101 NIPSNSSLFFLPRLRKLNLAF-NDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHI 179 (957)
Q Consensus 101 ~~~~~~~l~~l~~L~~L~Ls~-n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~ 179 (957)
.+++ .+..+++|++|++++ |.+.+. +|..+ +.+++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+
T Consensus 67 ~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~ 141 (313)
T 1ogq_A 67 PIPS--SLANLPYLNFLYIGGINNLVGP-IPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTL 141 (313)
T ss_dssp ECCG--GGGGCTTCSEEEEEEETTEESC-CCGGG-GGCTTCSEEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCC
T ss_pred ccCh--hHhCCCCCCeeeCCCCCccccc-CChhH-hcCCCCCEEECcCCeeCCcCCHHHhC-CCCCCEEeCCCCccCCcC
Confidence 7776 788888888888884 777654 67666 78888888888888888788887776 888888888888888788
Q ss_pred chhccCCCCCCEEEccCCcCCCCCchhhhhCCC-CCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhh
Q 002167 180 PSSFSNLHQLRHLDLQSNNFVGKIPASLGNNIT-QLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGN 258 (957)
Q Consensus 180 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~ 258 (957)
|..+.++++|++|++++|.+++.+|..++ .++ +|++|++++|.+++.+|..++.++ |++|++++|++++.+|..+..
T Consensus 142 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~ 219 (313)
T 1ogq_A 142 PPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS 219 (313)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT
T ss_pred ChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc
Confidence 88888888888888888888777887777 666 788888888888877787777776 888888888887666666655
Q ss_pred hccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceE
Q 002167 259 NITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEI 338 (957)
Q Consensus 259 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 338 (957)
+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+
T Consensus 220 -l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l 296 (313)
T 1ogq_A 220 -DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296 (313)
T ss_dssp -TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred -CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence 78888888888888765554 677788888888888887777888888888888888888887777765 677777777
Q ss_pred ecCCCC
Q 002167 339 YLSFSN 344 (957)
Q Consensus 339 ~L~~n~ 344 (957)
++++|.
T Consensus 297 ~l~~N~ 302 (313)
T 1ogq_A 297 AYANNK 302 (313)
T ss_dssp GTCSSS
T ss_pred HhcCCC
Confidence 777776
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-39 Score=373.23 Aligned_cols=284 Identities=29% Similarity=0.351 Sum_probs=170.2
Q ss_pred CCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEcc
Q 002167 474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLS 553 (957)
Q Consensus 474 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 553 (957)
++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|... .+|++|++++|++++ +| .+..+++|++|+++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 567777777777775 56 58888889999999998885 55443 378888888888776 44 57777888888888
Q ss_pred CCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCC
Q 002167 554 GNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLP 633 (957)
Q Consensus 554 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 633 (957)
+|++++ +|... ++|++|++++|.++ .+|.....++|++|++++|++++ +|.. .++|+.|++++|++++ +|
T Consensus 204 ~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~ 273 (454)
T 1jl5_A 204 NNSLKK-LPDLP---LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LP 273 (454)
T ss_dssp SSCCSS-CCCCC---TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CC
T ss_pred CCcCCc-CCCCc---CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cC
Confidence 887775 33322 47778888888777 56653333778888888877775 3432 3677778888877775 44
Q ss_pred ccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhh
Q 002167 634 PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLES 713 (957)
Q Consensus 634 ~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~ 713 (957)
.. .++|++|++++|++++. |.. .++|++|++++|++.+. +. ..++|+.|++++|++++ +|..
T Consensus 274 ~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~~-----~~~~L~~L~Ls~N~l~~-lp~~---- 335 (454)
T 1jl5_A 274 EL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL-CD-----LPPSLEELNVSNNKLIE-LPAL---- 335 (454)
T ss_dssp CC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE-CC-----CCTTCCEEECCSSCCSC-CCCC----
T ss_pred cc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc-cC-----CcCcCCEEECCCCcccc-cccc----
Confidence 43 36777788887777762 111 15677777777776552 11 11467777777777765 4421
Q ss_pred hhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCc
Q 002167 714 FKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNN 793 (957)
Q Consensus 714 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 793 (957)
+++|+.|++++|++++ +|. .+++|+.|+|++|+
T Consensus 336 -------------------------------------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 336 -------------------------------------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp -------------------------------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred -------------------------------------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCC
Confidence 2456777777777774 555 36777777777777
Q ss_pred CCC--CCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccc--cCCCCC
Q 002167 794 LTG--CIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEG--PIPGGP 850 (957)
Q Consensus 794 l~~--~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g--~ip~~~ 850 (957)
+++ .+|.+++.+ +.|++.|.+|.. +++|++||+++|+++| .||...
T Consensus 369 l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 369 LREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp CSSCCCCCTTCCEE--------ECCC-----------------------------------
T ss_pred CCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchhhH
Confidence 777 666655433 346666666653 3678899999999988 788653
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.6e-38 Score=360.47 Aligned_cols=372 Identities=25% Similarity=0.324 Sum_probs=255.2
Q ss_pred cccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhh-----------ccCcceEEECCCcccCCCCCC
Q 002167 382 FPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDI-----------GVHTLIELDLSRNFLTSIDHL 450 (957)
Q Consensus 382 l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-----------~~~~L~~L~Ls~n~l~~~~~~ 450 (957)
..+|++|++++|.++.+|+.++.+++|++|++++|.+.+.+|..++.. ....+++|++++|.+++++..
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 456777777777777788777888888888888887777777665432 113458889999988887663
Q ss_pred CCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeeccc
Q 002167 451 PWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRM 530 (957)
Q Consensus 451 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~ 530 (957)
.++|++|++++|.+++ +|..+++|+.|++++|.+++. |.. .++|++|++++|.+++ +|......+|++|++++
T Consensus 90 -~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 90 -PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDN 162 (454)
T ss_dssp -CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCS
T ss_pred -cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCC
Confidence 4788888998888887 677778899999999888753 221 2688999999998885 67544445899999999
Q ss_pred ccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCcc
Q 002167 531 NNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQ 610 (957)
Q Consensus 531 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~ 610 (957)
|++++ +|... .+|++|++++|++++ +| .+.++++|++|++++|++++ +|... ++|++|++++|.++ .+|.
T Consensus 163 N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp~ 232 (454)
T 1jl5_A 163 NSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP--LSLESIVAGNNILE-ELPE 232 (454)
T ss_dssp SCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCS-SCCC
T ss_pred CcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc--CcccEEECcCCcCC-cccc
Confidence 98886 44433 588999999998886 45 58888999999999998875 55432 57889999999888 5664
Q ss_pred ccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCC
Q 002167 611 TFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFP 690 (957)
Q Consensus 611 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 690 (957)
+..+++|++|++++|++++ +|.. .++|+.|++++|++++ +|.. .++|++|++++|++.+.. . ..+
T Consensus 233 -~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~-----~~~ 297 (454)
T 1jl5_A 233 -LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E-----LPP 297 (454)
T ss_dssp -CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C-----CCT
T ss_pred -cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C-----cCC
Confidence 8888889999999998885 4543 3788889999988886 4443 378888888888877621 1 125
Q ss_pred CceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCcc
Q 002167 691 KLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRF 770 (957)
Q Consensus 691 ~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 770 (957)
+|+.|++++|++++. |. ...+|+.|++++|++
T Consensus 298 ~L~~L~l~~N~l~~i-~~-----------------------------------------------~~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 298 NLYYLNASSNEIRSL-CD-----------------------------------------------LPPSLEELNVSNNKL 329 (454)
T ss_dssp TCCEEECCSSCCSEE-CC-----------------------------------------------CCTTCCEEECCSSCC
T ss_pred cCCEEECcCCcCCcc-cC-----------------------------------------------CcCcCCEEECCCCcc
Confidence 788888888888751 10 024678899999999
Q ss_pred CccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccc--cCcccCcCCCCCCeEECccCcccccCCC
Q 002167 771 QRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAG--RIPTQLASLNYLSVLNLSNNQLEGPIPG 848 (957)
Q Consensus 771 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 848 (957)
++ +|.. +++|+.|++++|++++ +|. .+++|++|++++|++++ .+|.++.. +++|++.|.+|.
T Consensus 330 ~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~ 393 (454)
T 1jl5_A 330 IE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPE 393 (454)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-------
T ss_pred cc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhccccccccc
Confidence 87 6654 5788999999999984 666 47889999999999998 77776543 346888888886
Q ss_pred C
Q 002167 849 G 849 (957)
Q Consensus 849 ~ 849 (957)
.
T Consensus 394 ~ 394 (454)
T 1jl5_A 394 L 394 (454)
T ss_dssp -
T ss_pred c
Confidence 4
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=9.4e-38 Score=361.18 Aligned_cols=379 Identities=17% Similarity=0.197 Sum_probs=237.9
Q ss_pred ccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCC-CCCCCCCccceeeccCccC
Q 002167 387 ALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTS-IDHLPWKNLEYLHLDSNSL 465 (957)
Q Consensus 387 ~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~L~~L~l~~n~l 465 (957)
.++.+++.++.+|. -.++|++|++++|.+++..|..+... ++|++|++++|.+.. +....+..
T Consensus 14 ~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~n~~~~~i~~~~~~~----------- 77 (455)
T 3v47_A 14 NAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRL--QDLQFLKVEQQTPGLVIRNNTFRG----------- 77 (455)
T ss_dssp EEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSC--TTCCEEECCCCSTTCEECTTTTTT-----------
T ss_pred ccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccC--ccccEEECcCCcccceECcccccc-----------
Confidence 34555556666665 22567777777777766555555433 444444444443321 11111111
Q ss_pred CCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCC
Q 002167 466 QGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGC 545 (957)
Q Consensus 466 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 545 (957)
.++|++|++++|.+++..|..|..+++|++|++++|.+++.++.. ..+..++
T Consensus 78 -------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------------~~~~~l~ 129 (455)
T 3v47_A 78 -------LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG---------------------NFFKPLT 129 (455)
T ss_dssp -------CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS---------------------STTTTCT
T ss_pred -------cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCc---------------------ccccCcc
Confidence 134444444444444444555555555555555555544322221 1244455
Q ss_pred CccEEEccCCcCCCCCCcc-ccCCCCCCeEEcCCCccccccCccccC---CcccEEECCCCcCCCCCccc--------cc
Q 002167 546 KLTYLRLSGNHLEGPLPPS-LTNCVKLQFLDVGNNNLSGQIPECLGN---STLQVLDMRMNNFSGSLPQT--------FA 613 (957)
Q Consensus 546 ~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~---~~L~~L~Ls~n~l~~~~p~~--------~~ 613 (957)
+|++|++++|++++..|.. +.++++|++|++++|.+++..|..+.. .+|+.|++++|.+.+..+.. +.
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 209 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccc
Confidence 5555555555555554443 555555555555555555555544432 45555555555555433322 12
Q ss_pred cCCCccEEEccCCcCccCCCccccCC---CCCcEEeCCCCcccc----------Cccccccc--cccccEEEcccccccc
Q 002167 614 KSCVLVSLNLNGNRLKGPLPPSLVNC---QYLEVLDVGNNQIDD----------TFPYWLDV--LLELQVLILRSNRFWG 678 (957)
Q Consensus 614 ~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~ls~n~l~~----------~~p~~l~~--l~~L~~L~L~~n~~~~ 678 (957)
.+++|++|++++|++++..|..+... ++|+.|++++|...+ ..+..+.. .++|++|++++|.+.+
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence 34556666666665555554444332 555666665554332 22222332 2578888888888877
Q ss_pred cCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcc
Q 002167 679 PIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILT 758 (957)
Q Consensus 679 ~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 758 (957)
.++... ..+++|+.|++++|++++..|..+ ..++
T Consensus 290 ~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~--------------------------------------------~~l~ 323 (455)
T 3v47_A 290 LLKSVF--SHFTDLEQLTLAQNEINKIDDNAF--------------------------------------------WGLT 323 (455)
T ss_dssp ECTTTT--TTCTTCCEEECTTSCCCEECTTTT--------------------------------------------TTCT
T ss_pred cchhhc--ccCCCCCEEECCCCcccccChhHh--------------------------------------------cCcc
Confidence 666554 557788888888888887666331 1257
Q ss_pred cceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECc
Q 002167 759 TFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLS 838 (957)
Q Consensus 759 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls 838 (957)
+|+.|+|++|.+++..|..++.+++|+.|+|++|++++..|..|+.+++|++|+|++|++++..+..+..+++|++|+++
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 403 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 403 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEcc
Confidence 89999999999999999999999999999999999999999999999999999999999998877888999999999999
Q ss_pred cCcccccCCCCCCCCcc
Q 002167 839 NNQLEGPIPGGPQFNTF 855 (957)
Q Consensus 839 ~N~l~g~ip~~~~~~~~ 855 (957)
+|+++|.+|...++..|
T Consensus 404 ~N~l~~~~~~~~~l~~~ 420 (455)
T 3v47_A 404 TNPWDCSCPRIDYLSRW 420 (455)
T ss_dssp SSCBCCCTTTTHHHHHH
T ss_pred CCCcccCCCcchHHHHH
Confidence 99999999965544334
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.1e-37 Score=355.01 Aligned_cols=176 Identities=24% Similarity=0.313 Sum_probs=120.5
Q ss_pred cEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEcc
Q 002167 141 TLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220 (957)
Q Consensus 141 ~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls 220 (957)
+.++.+++.++ .+|. + .++|++|+|++|.+++..|..|+++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 45666777766 6776 2 36788888888888777777788888888888888877666655444478888888888
Q ss_pred CCCCCCCCCcccCCCCcccEEeccCCCCccccchh--HhhhccCCcEEECcCCcCCccCccc-ccCcCCCcEEEeccCcC
Q 002167 221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPAS--LGNNITQLAYLDLSSNGFSGHIPSS-FSNLQQLLWLNLEYNNF 297 (957)
Q Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~--l~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 297 (957)
+|.+++..|..|+++++|++|++++|++++.++.. +.. +++|++|++++|.+++..|.. +.++++|++|++++|.+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP-LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT-CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC-cccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 88887777777888888888888888877554443 433 677777777777776655554 56666666666666666
Q ss_pred cccCCcccccc--CcCceeeccCCcCC
Q 002167 298 VGKIPDMFTNL--TQLSFLGLAYNELI 322 (957)
Q Consensus 298 ~~~~p~~l~~l--~~L~~L~L~~n~l~ 322 (957)
.+..+..+..+ .+|+.|++++|.+.
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~ 193 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQ 193 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCT
T ss_pred cccChhhhhccccccccccccccCccc
Confidence 66555555444 34555555555443
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.9e-35 Score=339.06 Aligned_cols=329 Identities=20% Similarity=0.210 Sum_probs=240.8
Q ss_pred CCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEc
Q 002167 473 PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRL 552 (957)
Q Consensus 473 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 552 (957)
++.++.|++++|.+++..+..|.++++|++|++++|.+++. .|..+..+++|++|+|
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-----------------------~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV-----------------------EPGAFNNLFNLRTLGL 87 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-----------------------CTTTTTTCTTCCEEEC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe-----------------------ChhhhhCCccCCEEEC
Confidence 44555666666666655555666666666666666655544 3444555566666666
Q ss_pred cCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccC
Q 002167 553 SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGP 631 (957)
Q Consensus 553 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 631 (957)
++|++++..+..|.++++|++|++++|.+.+..|..+.. ++|++|++++|.+++..+..|..+++|+.|++++|++++.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 666666555555666677777777777766666655554 6677777777777766666777777777777777777765
Q ss_pred CCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHH
Q 002167 632 LPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYL 711 (957)
Q Consensus 632 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~ 711 (957)
.+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.++... ....+|+.|++++|++++ +|...+
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~-~~~~~~ 244 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLNLTSLSITHCNLTA-VPYLAV 244 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCCCSEEEEESSCCCS-CCHHHH
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCccccEEECcCCcccc-cCHHHh
Confidence 55667777777777777777777766777777778888888777766666544 234488999999998875 443322
Q ss_pred hhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCC
Q 002167 712 ESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISH 791 (957)
Q Consensus 712 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~ 791 (957)
..+++|+.|+|++|.+++..+..|..+++|+.|+|++
T Consensus 245 -------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 245 -------------------------------------------RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281 (477)
T ss_dssp -------------------------------------------TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS
T ss_pred -------------------------------------------cCccccCeeECCCCcCCccChhhccccccCCEEECCC
Confidence 1257899999999999999899999999999999999
Q ss_pred CcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCCCCCCcccCCcccCCcCCCCCC
Q 002167 792 NNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFP 870 (957)
Q Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~ 870 (957)
|++++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|+++|.++..+.+.......+.++...|..|
T Consensus 282 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp SCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 9999999999999999999999999999988888999999999999999999987754333222334566777777654
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.9e-34 Score=330.74 Aligned_cols=355 Identities=19% Similarity=0.172 Sum_probs=223.0
Q ss_pred hhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEe
Q 002167 402 LRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSI 481 (957)
Q Consensus 402 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l 481 (957)
+..+++|++|++++|.+++. | .+. .+++|++|++++|.+++++...+++|++|++++|.+++......++|++|++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L 113 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIE--KLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNC 113 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGG--GCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhc--ccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceeecCCCCcCCEEEC
Confidence 44455555555555555532 3 222 2255555555555555544334444444444444444321122355566666
Q ss_pred ccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCC
Q 002167 482 SNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPL 561 (957)
Q Consensus 482 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 561 (957)
++|.+++. | +..+++|++|++++|.+++. + .....+|++|++++|+..+.+ .+..+++|++|++++|++++ +
T Consensus 114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-C
T ss_pred CCCcCCee-c--CCCCCcCCEEECCCCcccee-c-cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-e
Confidence 66666542 2 55666666666666666652 2 222336666666666544444 35556666667776666665 2
Q ss_pred CccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCC
Q 002167 562 PPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQ 640 (957)
Q Consensus 562 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 640 (957)
| +..+++|+.|++++|++++. + ++. ++|++|++++|++++ +| +..+++|+.|++++|++++.. +..++
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~-~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~ 254 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL-D--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLS 254 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCT
T ss_pred c--cccCCCCCEEECcCCcCCee-c--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCC
Confidence 3 56666666777766666643 1 322 666666666666665 34 566666677777776666542 34455
Q ss_pred CCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccC
Q 002167 641 YLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHG 720 (957)
Q Consensus 641 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~ 720 (957)
+|+.|++++| +|+.|++++|++.+.+|. ..+++|+.||+++|.+.|.+|... ..++.+.
T Consensus 255 ~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~----~~l~~L~~L~Ls~n~~l~~l~~~~-~~L~~L~-- 313 (457)
T 3bz5_A 255 KLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA----EGCRKIKELDVTHNTQLYLLDCQA-AGITELD-- 313 (457)
T ss_dssp TCCEEECTTC--------------CCSCCCCTTCTTCCEEEC----TTCTTCCCCCCTTCTTCCEEECTT-CCCSCCC--
T ss_pred CCCEEeccCC--------------CCCEEECCCCccCCcccc----cccccCCEEECCCCcccceeccCC-CcceEec--
Confidence 6666665554 456677788877777663 347888899999998888877421 1111110
Q ss_pred CCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCch
Q 002167 721 NNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPS 800 (957)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 800 (957)
....+.|+.|++++|++++. + ++++++|+.|++++|++++
T Consensus 314 ---------------------------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~---- 353 (457)
T 3bz5_A 314 ---------------------------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD---- 353 (457)
T ss_dssp ---------------------------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB----
T ss_pred ---------------------------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC----
Confidence 01146889999999999994 3 9999999999999999997
Q ss_pred hhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCC
Q 002167 801 SLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG 849 (957)
Q Consensus 801 ~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 849 (957)
++.|+.|++++|+++|. ..+..|..+++++|+++|.||..
T Consensus 354 ----l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 354 ----FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp ----CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ----ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 24677788999999987 34567888999999999999975
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.7e-34 Score=325.68 Aligned_cols=129 Identities=22% Similarity=0.280 Sum_probs=89.4
Q ss_pred ccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCC
Q 002167 476 MVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN 555 (957)
Q Consensus 476 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 555 (957)
|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|. ....|+.|++++| ++|++|++++|
T Consensus 266 L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~l~~~-------------~~L~~L~L~~N 328 (457)
T 3bz5_A 266 LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--QAAGITELDLSQN-------------PKLVYLYLNNT 328 (457)
T ss_dssp CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCCCCTTC-------------TTCCEEECTTC
T ss_pred CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc--CCCcceEechhhc-------------ccCCEEECCCC
Confidence 4456666666666665 45678888888888887777764 2246677766655 57888888888
Q ss_pred cCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCcc
Q 002167 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPS 635 (957)
Q Consensus 556 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 635 (957)
++++. + +.++++|+.|++++|++++ + +.|+.|+++.|.+.|. ..+..|+.+++++|+++|.+|..
T Consensus 329 ~l~~l-~--l~~l~~L~~L~l~~N~l~~-l------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 329 ELTEL-D--VSHNTKLKSLSCVNAHIQD-F------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CCSCC-C--CTTCTTCSEEECCSSCCCB-C------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ccccc-c--cccCCcCcEEECCCCCCCC-c------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 88874 2 7788888888888888875 2 3466667777777654 23445666677777777776654
Q ss_pred c
Q 002167 636 L 636 (957)
Q Consensus 636 l 636 (957)
+
T Consensus 394 ~ 394 (457)
T 3bz5_A 394 L 394 (457)
T ss_dssp C
T ss_pred H
Confidence 4
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.5e-33 Score=324.33 Aligned_cols=283 Identities=27% Similarity=0.335 Sum_probs=191.1
Q ss_pred ccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCe
Q 002167 494 FCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQF 573 (957)
Q Consensus 494 l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 573 (957)
+..+++|++|++++|.+++. +......+|++|++++|++.+. + .+..+++|++|+++ |.+.+.. .+.++++|++
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~ 181 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLER 181 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCE
T ss_pred hcCCCCCCEEECCCCCCCCC-hHHcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCE
Confidence 44444444444444444432 2122223455555555544432 1 24555666666664 3333222 2666666666
Q ss_pred EEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccc
Q 002167 574 LDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653 (957)
Q Consensus 574 L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 653 (957)
|++++|.+.+ ++.....++|++|++++|.+++..| ++.+++|+.|++++|++++. ..+..+++|+.|++++|.++
T Consensus 182 L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 182 LDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp EECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred EECcCCcCCC-ChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 6666666653 2322222667777777777665544 55667777777777777643 35667777777777777777
Q ss_pred cCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccC
Q 002167 654 DTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLP 733 (957)
Q Consensus 654 ~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~ 733 (957)
+..| +..+++|+.|++++|.+.+..+ ...+++|+.|++++|++++..|.
T Consensus 257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~~------------------------- 305 (466)
T 1o6v_A 257 NLAP--LSGLTKLTELKLGANQISNISP----LAGLTALTNLELNENQLEDISPI------------------------- 305 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCCCCGG----GTTCTTCSEEECCSSCCSCCGGG-------------------------
T ss_pred cchh--hhcCCCCCEEECCCCccCcccc----ccCCCccCeEEcCCCcccCchhh-------------------------
Confidence 6554 6677777777777777665433 34577888888888888765441
Q ss_pred CCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEEC
Q 002167 734 GSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDL 813 (957)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~L 813 (957)
..+++|+.|+|++|++++..| ++.+++|+.|++++|++++. ..++++++|++|++
T Consensus 306 ---------------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 306 ---------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 360 (466)
T ss_dssp ---------------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred ---------------------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeC
Confidence 115788999999999998776 78999999999999999986 46899999999999
Q ss_pred CCCcccccCcccCcCCCCCCeEECccCccccc
Q 002167 814 SSNKLAGRIPTQLASLNYLSVLNLSNNQLEGP 845 (957)
Q Consensus 814 s~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ 845 (957)
++|++++.+| +..+++|+.|++++|++++.
T Consensus 361 ~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 361 GHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 9999999887 88999999999999999983
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.7e-33 Score=319.79 Aligned_cols=261 Identities=25% Similarity=0.314 Sum_probs=197.2
Q ss_pred ccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCe
Q 002167 494 FCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQF 573 (957)
Q Consensus 494 l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 573 (957)
+..+++|++|++++|.+.+ ++......+|++|+++ |.+.+.. .+..+++|++|++++|.+.+. ..+..+++|++
T Consensus 130 ~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 203 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLES 203 (466)
T ss_dssp GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCE
Confidence 4555555555555555553 2332233355556554 3333222 266677888888888887654 34778888888
Q ss_pred EEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccc
Q 002167 574 LDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQID 653 (957)
Q Consensus 574 L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~ 653 (957)
|++++|.+.+..| ....++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.++
T Consensus 204 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 204 LIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278 (466)
T ss_dssp EECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC
T ss_pred EEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC
Confidence 8888888876555 22237888888888888753 457788889999999988886544 788888999999999888
Q ss_pred cCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccC
Q 002167 654 DTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLP 733 (957)
Q Consensus 654 ~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~ 733 (957)
+..+ +..+++|++|++++|++.+..+ ...+++|+.|++++|++++..|..
T Consensus 279 ~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~------------------------ 328 (466)
T 1o6v_A 279 NISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISPVS------------------------ 328 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGGGG------------------------
T ss_pred cccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCCCchhhc------------------------
Confidence 7655 7888899999999998876544 356889999999999998866521
Q ss_pred CCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEEC
Q 002167 734 GSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDL 813 (957)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~L 813 (957)
.+++|+.|++++|++++. ..++.+++|+.|++++|++++.+| +..+++|+.|++
T Consensus 329 ----------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 329 ----------------------SLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp ----------------------GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred ----------------------cCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 157899999999999986 578999999999999999999887 899999999999
Q ss_pred CCCccccc
Q 002167 814 SSNKLAGR 821 (957)
Q Consensus 814 s~N~l~g~ 821 (957)
++|++++.
T Consensus 383 ~~n~~~~~ 390 (466)
T 1o6v_A 383 NDQAWTNA 390 (466)
T ss_dssp CCEEEECC
T ss_pred cCCcccCC
Confidence 99999973
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3e-33 Score=305.24 Aligned_cols=259 Identities=32% Similarity=0.538 Sum_probs=196.3
Q ss_pred CCccEEEccCCcCCC--CCCccccCCCCCCeEEcCC-CccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccE
Q 002167 545 CKLTYLRLSGNHLEG--PLPPSLTNCVKLQFLDVGN-NNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVS 620 (957)
Q Consensus 545 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 620 (957)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..++. ++|++|++++|.+++.+|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 356677777777776 6677777777777777773 6666666665544 66666666666666666666666666666
Q ss_pred EEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCC
Q 002167 621 LNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHN 700 (957)
Q Consensus 621 L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N 700 (957)
|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ ++|+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-------------------------~~L~~L~L~~N 184 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-------------------------KLFTSMTISRN 184 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-------------------------TTCCEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-------------------------hcCcEEECcCC
Confidence 66666666666666666666666666666666666665555443 14555556666
Q ss_pred cCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccc
Q 002167 701 QLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGK 780 (957)
Q Consensus 701 ~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~ 780 (957)
+++|.+|..+ ..+. |+.|++++|.+++.+|..++.
T Consensus 185 ~l~~~~~~~~--------------------------------------------~~l~-L~~L~Ls~N~l~~~~~~~~~~ 219 (313)
T 1ogq_A 185 RLTGKIPPTF--------------------------------------------ANLN-LAFVDLSRNMLEGDASVLFGS 219 (313)
T ss_dssp EEEEECCGGG--------------------------------------------GGCC-CSEEECCSSEEEECCGGGCCT
T ss_pred eeeccCChHH--------------------------------------------hCCc-ccEEECcCCcccCcCCHHHhc
Confidence 6666666432 0123 788999999999999999999
Q ss_pred cCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCCCCCCcccCCcc
Q 002167 781 LNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSY 860 (957)
Q Consensus 781 l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~ 860 (957)
+++|+.|+|++|++++.+|. +..+++|++|+|++|+++|.+|..+..+++|++|++++|+++|.+|...++..+....+
T Consensus 220 l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l 298 (313)
T 1ogq_A 220 DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY 298 (313)
T ss_dssp TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHh
Confidence 99999999999999988777 88899999999999999999999999999999999999999999999888888888889
Q ss_pred cCCcCCCCCCCCCCC
Q 002167 861 SGNSGLCGFPLSKSC 875 (957)
Q Consensus 861 ~gn~~lcg~~~~~~c 875 (957)
.||+.+||.|++ .|
T Consensus 299 ~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 299 ANNKCLCGSPLP-AC 312 (313)
T ss_dssp CSSSEEESTTSS-CC
T ss_pred cCCCCccCCCCC-CC
Confidence 999999998875 47
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-31 Score=301.21 Aligned_cols=349 Identities=19% Similarity=0.207 Sum_probs=238.0
Q ss_pred ccCCCCCCCCCcc-ccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCc
Q 002167 63 KMMSWKEDADCCS-WDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLT 141 (957)
Q Consensus 63 ~l~~W~~~~~~c~-w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~ 141 (957)
.+++|..+.+||. |.+..|.....++ ........... .-..++++++|++++|.+.. +|..++..+++|+
T Consensus 2 ~~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~ 72 (390)
T 3o6n_A 2 NVKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGF--EDITLNNQKIVTFKNSTMRK--LPAALLDSFRQVE 72 (390)
T ss_dssp -----CCEECBCC------EEEESCEE-----CSSCCCCEESC--SSGGGCCCSEEEEESCEESE--ECTHHHHHCCCCS
T ss_pred CcCCCCCccceehhhhhhccceeeeee-----ecccccccccc--cccccCCceEEEecCCchhh--CChhHhcccccCc
Confidence 3678998888885 5555553221121 22111111111 23467899999999998865 7777778999999
Q ss_pred EEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccC
Q 002167 142 LLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSS 221 (957)
Q Consensus 142 ~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~ 221 (957)
+|++++|.+.+..|..+.. +++|++|+|++|.+.+..|..++++++|++|++++|.+. .+|..++.++++|++|++++
T Consensus 73 ~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~ 150 (390)
T 3o6n_A 73 LLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSN 150 (390)
T ss_dssp EEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcccccChhhccC-CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCC
Confidence 9999999998544456665 999999999999999888888999999999999999988 67777655899999999999
Q ss_pred CCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccC
Q 002167 222 NSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI 301 (957)
Q Consensus 222 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 301 (957)
|.+++..|..++++++|++|++++|+++ .++ +.. +++|++|++++|.+++ +...++|++|++++|.+...
T Consensus 151 n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~--~~~-l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~- 220 (390)
T 3o6n_A 151 NNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSL-IPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV- 220 (390)
T ss_dssp SCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC--GGG-CTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-
T ss_pred CccCccChhhccCCCCCCEEECCCCcCC-ccc--ccc-ccccceeecccccccc-----cCCCCcceEEECCCCeeeec-
Confidence 9999888888999999999999999988 444 333 8899999999998874 34456899999999988754
Q ss_pred CccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccCCCc
Q 002167 302 PDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTANSS 381 (957)
Q Consensus 302 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~ 381 (957)
|. ...++|++|++++|.+++. ..+..+++|++|++++|.+.+. ....+..+++|+.|++++|.+
T Consensus 221 ~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l----------- 284 (390)
T 3o6n_A 221 RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRL----------- 284 (390)
T ss_dssp EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECCSSCC-----------
T ss_pred cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc-ChhHccccccCCEEECCCCcC-----------
Confidence 32 2347889999999988753 5677888888888888887743 234456666666666666654
Q ss_pred cccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeecc
Q 002167 382 FPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLD 461 (957)
Q Consensus 382 l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~ 461 (957)
+.+|..+..+++|++|++++|++. .+|..+... ++|+.|++++|.++.++...+++|++|+++
T Consensus 285 --------------~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l--~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 285 --------------VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF--DRLENLYLDHNSIVTLKLSTHHTLKNLTLS 347 (390)
T ss_dssp --------------CEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHH--TTCSEEECCSSCCCCCCCCTTCCCSEEECC
T ss_pred --------------cccCcccCCCCCCCEEECCCCcce-ecCcccccc--CcCCEEECCCCccceeCchhhccCCEEEcC
Confidence 333333344455555555555554 333333322 555555555555555444444444444444
Q ss_pred CccC
Q 002167 462 SNSL 465 (957)
Q Consensus 462 ~n~l 465 (957)
+|++
T Consensus 348 ~N~~ 351 (390)
T 3o6n_A 348 HNDW 351 (390)
T ss_dssp SSCE
T ss_pred CCCc
Confidence 4443
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.5e-32 Score=322.07 Aligned_cols=332 Identities=21% Similarity=0.218 Sum_probs=272.3
Q ss_pred CCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCcccccc-ccceeecccccccCcCCCcCCCCCCccEEEc
Q 002167 474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNS-TLETLDLRMNNFQGSIPQTNAKGCKLTYLRL 552 (957)
Q Consensus 474 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 552 (957)
.+++.+++++|.+....+..+..+++|++|++++|.+++..|..+... +|++|+|++|.+++..|..+..+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 567788888888776666667788889999999998887777565544 8899999999988888888888999999999
Q ss_pred cCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccC
Q 002167 553 SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGP 631 (957)
Q Consensus 553 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 631 (957)
++|.+++..+..|.++++|++|++++|.+++..|..++. ++|++|++++|.+++.. +..+++|+.|++++|.+++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-
Confidence 999998766666788999999999999998888877766 88999999999988652 5667889999999998874
Q ss_pred CCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHH
Q 002167 632 LPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYL 711 (957)
Q Consensus 632 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~ 711 (957)
+...++|+.|++++|.+....+.. .++|+.|++++|.+.+. .....+++|+.|++++|.+++.+|..+
T Consensus 207 ----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~- 274 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYNELEKIMYHPF- 274 (597)
T ss_dssp ----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCEEESGGG-
T ss_pred ----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC----hhhccCCCCCEEECCCCccCCCCHHHh-
Confidence 345568999999999887654332 36899999999998764 234668899999999999998877542
Q ss_pred hhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCC
Q 002167 712 ESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISH 791 (957)
Q Consensus 712 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~ 791 (957)
..+++|+.|+|++|.+++ +|..++.+++|+.|+|++
T Consensus 275 -------------------------------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 275 -------------------------------------------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp -------------------------------------------TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCS
T ss_pred -------------------------------------------cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCC
Confidence 125789999999999987 577888899999999999
Q ss_pred CcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCCCCCCcccCCcccCCcCCCCCC
Q 002167 792 NNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGFP 870 (957)
Q Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~~ 870 (957)
|.++ .+|..++.+++|++|+|++|++++.. +..+++|++|++++|+++|.++.. .+..+....+.++...|+.+
T Consensus 311 N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 311 NHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred CCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCcc
Confidence 9999 57888999999999999999998753 677889999999999999976533 35666677788999999864
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5e-32 Score=314.94 Aligned_cols=321 Identities=22% Similarity=0.179 Sum_probs=277.2
Q ss_pred CEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCc
Q 002167 501 QYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNN 580 (957)
Q Consensus 501 ~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 580 (957)
+.++.+++.++ .+|..+. ..++.|+|++|++++..+..+..+++|++|+|++|.+++..|..|.++++|++|+|++|+
T Consensus 14 ~~v~c~~~~l~-~ip~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcC-cCCCCCC-CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 46777777776 5565442 378899999999988888899999999999999999999889999999999999999999
Q ss_pred cccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcccc
Q 002167 581 LSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYW 659 (957)
Q Consensus 581 l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~ 659 (957)
+++..+..+.. ++|++|+|++|.+.+..+..|..+++|+.|++++|.+++..+..|.++++|++|++++|++++..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 99665566655 99999999999999999999999999999999999999988999999999999999999999988888
Q ss_pred ccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCcc
Q 002167 660 LDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYY 739 (957)
Q Consensus 660 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 739 (957)
+..+++|+.|++++|.+.+..+... ..+++|+.|++++|++.+.+|...+.
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~--------------------------- 222 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSF--KRLYRLKVLEISHWPYLDTMTPNCLY--------------------------- 222 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCS--CSCTTCCEEEEECCTTCCEECTTTTT---------------------------
T ss_pred hcccCCCcEEeCCCCcCcEeChhhc--ccCcccceeeCCCCccccccCccccc---------------------------
Confidence 9999999999999999987665443 67899999999999988877754211
Q ss_pred ceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCccc
Q 002167 740 ESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLA 819 (957)
Q Consensus 740 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~ 819 (957)
..+|+.|+|++|++++..+..++.+++|+.|+|++|++++..+..|..+++|++|+|++|+++
T Consensus 223 -----------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (477)
T 2id5_A 223 -----------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285 (477)
T ss_dssp -----------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCS
T ss_pred -----------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccc
Confidence 247899999999999766678999999999999999999999999999999999999999999
Q ss_pred ccCcccCcCCCCCCeEECccCcccccCCCC-CCCCcccCCcccCCcCCCCC
Q 002167 820 GRIPTQLASLNYLSVLNLSNNQLEGPIPGG-PQFNTFGNDSYSGNSGLCGF 869 (957)
Q Consensus 820 g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lcg~ 869 (957)
+..|..+..+++|++|++++|++++..|.. ..+.........+|+..|.+
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 999999999999999999999999754432 12223334456788877753
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=2.1e-31 Score=301.04 Aligned_cols=331 Identities=21% Similarity=0.232 Sum_probs=259.4
Q ss_pred CCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccc-cccceeecccccccCcCCCcCCCCCCccEEEc
Q 002167 474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLRL 552 (957)
Q Consensus 474 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 552 (957)
++++.+++++|.+....+..+..+++|++|++++|.+++..+..+.. .+|++|++++|++++..|..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 56777788887777555555777888888888888888666655544 38888888888888877888888888999999
Q ss_pred cCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccC
Q 002167 553 SGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGP 631 (957)
Q Consensus 553 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 631 (957)
++|+++...+..+.++++|++|++++|.+.+..|..+.. ++|++|++++|.+++. .+..+++|+.|++++|.+++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-
Confidence 999888655555788889999999999888777776765 8899999999988864 35667888999999988764
Q ss_pred CCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHH
Q 002167 632 LPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYL 711 (957)
Q Consensus 632 ~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~ 711 (957)
+...++|++|++++|.+..... ...++|+.|++++|.+.+. .....+++|+.|++++|.+++..|..+
T Consensus 201 ----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~Ls~n~l~~~~~~~~- 268 (390)
T 3o6n_A 201 ----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT----AWLLNYPGLVEVDLSYNELEKIMYHPF- 268 (390)
T ss_dssp ----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCEEESGGG-
T ss_pred ----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc----HHHcCCCCccEEECCCCcCCCcChhHc-
Confidence 2344678999999998876532 2347899999999988764 234568899999999999988766432
Q ss_pred hhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCC
Q 002167 712 ESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISH 791 (957)
Q Consensus 712 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~ 791 (957)
..+++|+.|+|++|++++ +|..++.+++|+.|+|++
T Consensus 269 -------------------------------------------~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 269 -------------------------------------------VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp -------------------------------------------TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCS
T ss_pred -------------------------------------------cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCC
Confidence 125789999999999986 577778899999999999
Q ss_pred CcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCCCCCCcccCCcccCCcCCCCC
Q 002167 792 NNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGGPQFNTFGNDSYSGNSGLCGF 869 (957)
Q Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lcg~ 869 (957)
|+++ .+|..++.+++|++|++++|+++.. | +..+++|++|++++|++++..... .+..+....+.+++..|..
T Consensus 305 n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 305 NHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp SCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCSCCCT
T ss_pred Ccce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHHH-HHHHHHhhcccccCceecc
Confidence 9999 5688899999999999999999865 3 778899999999999999864432 2444555556677666654
No 40
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.98 E-value=2.5e-32 Score=299.68 Aligned_cols=275 Identities=19% Similarity=0.260 Sum_probs=182.8
Q ss_pred cCCCCCHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCC----CCCCCCccccceEecC--------CCCcEEEE
Q 002167 24 SAILCSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSW----KEDADCCSWDGVTCDS--------ATGHVIGL 91 (957)
Q Consensus 24 ~~~~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W----~~~~~~c~w~gv~c~~--------~~~~v~~l 91 (957)
....+..+|++||++||+++..++. ..+.+| ....++|.|.|+.|.. ...+|+.|
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~-------------~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L 86 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRN-------------RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVAL 86 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCT-------------THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEE
T ss_pred eccccCchHHHHHHHHHHhccCCch-------------hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEE
Confidence 3345677899999999999855443 145788 4467899999999953 12345555
Q ss_pred EcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEcc
Q 002167 92 DLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLS 171 (957)
Q Consensus 92 ~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls 171 (957)
+|+++.+. . +|..+ ..+++|++|+|++|.+. .+|..++. +++|++|+|+
T Consensus 87 ~L~~n~l~-~---------------------------lp~~l-~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls 135 (328)
T 4fcg_A 87 ELRSVPLP-Q---------------------------FPDQA-FRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLA 135 (328)
T ss_dssp EEESSCCS-S---------------------------CCSCG-GGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEE
T ss_pred EccCCCch-h---------------------------cChhh-hhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECC
Confidence 55555544 3 44444 44555555555555555 55555554 5555555555
Q ss_pred CCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhh--------hCCCCCcEEEccCCCCCCCCCcccCCCCcccEEec
Q 002167 172 INSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLG--------NNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDL 243 (957)
Q Consensus 172 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~--------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 243 (957)
+|.+. .+|..++++++|++|++++|++.+.+|..+. .++++|++|++++|.++ .+|..++++++|++|++
T Consensus 136 ~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 136 RNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213 (328)
T ss_dssp SCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEE
T ss_pred CCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEc
Confidence 55555 4455555555555555555555555555442 13677777777777776 66666777777777777
Q ss_pred cCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCC
Q 002167 244 DDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIG 323 (957)
Q Consensus 244 s~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 323 (957)
++|+++ .+|..+.. +++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+
T Consensus 214 ~~N~l~-~l~~~l~~-l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 214 RNSPLS-ALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp ESSCCC-CCCGGGGG-CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred cCCCCC-cCchhhcc-CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 777776 46666555 7777777777777777777777777777777777777777777777777778888887777777
Q ss_pred CCCcchhcccCCceEecCCCCCc
Q 002167 324 SIPSSIFELLNLTEIYLSFSNFS 346 (957)
Q Consensus 324 ~~p~~l~~l~~L~~L~L~~n~l~ 346 (957)
.+|..++.+++|+.+++..+.+.
T Consensus 292 ~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 292 RLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCGGGGGSCTTCEEECCGGGSC
T ss_pred hccHHHhhccCceEEeCCHHHHH
Confidence 77777777777777777765443
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.5e-30 Score=310.41 Aligned_cols=346 Identities=20% Similarity=0.229 Sum_probs=245.0
Q ss_pred ccCCCCCCCCCcc----ccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCC
Q 002167 63 KMMSWKEDADCCS----WDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFP 138 (957)
Q Consensus 63 ~l~~W~~~~~~c~----w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~ 138 (957)
.+++|.++.+||. |.++.|+. .++.........+ .-..+++++.|++++|.+.. +|+.+|..++
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~------~i~~~~~~~~~~~----~~l~l~~l~~l~l~~~~l~~--lp~~~~~~l~ 75 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDV------HIDMQTQDVYFGF----EDITLNNQKIVTFKNSTMRK--LPAALLDSFR 75 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSC------EECSSCCCCEESC----SSGGGCCCSEEEESSCEESE--ECTHHHHHCC
T ss_pred cccCCCCCCcCcccCcCceeEecCc------eecccccccccCc----ccccCCCceEEEeeCCCCCC--cCHHHHccCC
Confidence 5789998888874 65555531 1222222221111 23457889999999998865 7777778999
Q ss_pred CCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEE
Q 002167 139 SLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLD 218 (957)
Q Consensus 139 ~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~ 218 (957)
+|++|+|++|.+.+..|..+.. +++|++|+|++|.+++..|..|+++++|++|+|++|.+. .+|..++.++++|++|+
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEE
Confidence 9999999999998665667776 999999999999999888888999999999999999998 66766545899999999
Q ss_pred ccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCc
Q 002167 219 LSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV 298 (957)
Q Consensus 219 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 298 (957)
+++|.+++..|..|+++++|++|++++|.+++ ++ +.. +++|+.|++++|.+++ +...++|++|++++|.+.
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~-l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSL-IPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN 224 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGG-CTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhh-hhhhhhhhcccCcccc-----ccCCchhheeeccCCccc
Confidence 99999998888889999999999999999884 44 233 7899999999998874 345568999999999887
Q ss_pred ccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccccccccccccC
Q 002167 299 GKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLSVSTKLTA 378 (957)
Q Consensus 299 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 378 (957)
...+.. .++|+.|++++|.+++ +..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+
T Consensus 225 ~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l-------- 290 (597)
T 3oja_B 225 VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNRL-------- 290 (597)
T ss_dssp EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEECTTSCC--------
T ss_pred cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH-HHhcCccCCCEEECCCCCC--------
Confidence 543332 3678899999998875 3677888888888888888775432 3455666666666666653
Q ss_pred CCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCcccee
Q 002167 379 NSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYL 458 (957)
Q Consensus 379 ~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L 458 (957)
..+|..+..+++|+.|++++|.++ .+|..+... ++|+.|++++|.++.++...+++|+.|
T Consensus 291 -----------------~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~L~~L 350 (597)
T 3oja_B 291 -----------------VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF--DRLENLYLDHNSIVTLKLSTHHTLKNL 350 (597)
T ss_dssp -----------------CEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHH--TTCSEEECCSSCCCCCCCCTTCCCSEE
T ss_pred -----------------CCCCcccccCCCCcEEECCCCCCC-ccCcccccC--CCCCEEECCCCCCCCcChhhcCCCCEE
Confidence 344444444555666666666555 344444332 556666666665555544444444444
Q ss_pred eccCccC
Q 002167 459 HLDSNSL 465 (957)
Q Consensus 459 ~l~~n~l 465 (957)
++++|++
T Consensus 351 ~l~~N~~ 357 (597)
T 3oja_B 351 TLSHNDW 357 (597)
T ss_dssp ECCSSCE
T ss_pred EeeCCCC
Confidence 4444443
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.9e-30 Score=285.88 Aligned_cols=303 Identities=22% Similarity=0.290 Sum_probs=241.9
Q ss_pred CCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEcc
Q 002167 474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLS 553 (957)
Q Consensus 474 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 553 (957)
++++.|++++|.+... + .+..+++|++|++++|.+++. +......+|++|++++|.+++. ..+..+++|++|+++
T Consensus 44 ~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLN 118 (347)
T ss_dssp TTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECT
T ss_pred ccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hhhhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECc
Confidence 5667777777766543 3 377788888888888888754 3333445888888888887753 357788899999999
Q ss_pred CCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCC
Q 002167 554 GNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLP 633 (957)
Q Consensus 554 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p 633 (957)
+|.+.+..+ +..+++|++|++++|.....++.....++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+
T Consensus 119 ~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 194 (347)
T 4fmz_A 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194 (347)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG
T ss_pred CCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc
Confidence 998886433 888999999999999766566554344889999999998886544 7888999999999999885433
Q ss_pred ccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhh
Q 002167 634 PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLES 713 (957)
Q Consensus 634 ~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~ 713 (957)
+..+++|+.|++++|.+.+..+ +..+++|++|++++|++.+..+ ...+++|+.|++++|.+++. +.
T Consensus 195 --~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~-~~----- 260 (347)
T 4fmz_A 195 --LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQISDI-NA----- 260 (347)
T ss_dssp --GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCC-GG-----
T ss_pred --ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCccCCC-hh-----
Confidence 8889999999999999887665 8888999999999998876544 45688999999999988763 21
Q ss_pred hhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCc
Q 002167 714 FKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNN 793 (957)
Q Consensus 714 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~ 793 (957)
...+++|+.|++++|++++. +.++.+++|+.|+|++|+
T Consensus 261 ----------------------------------------~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 261 ----------------------------------------VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp ----------------------------------------GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred ----------------------------------------HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCc
Confidence 01257899999999999875 468999999999999999
Q ss_pred CCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCccc
Q 002167 794 LTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843 (957)
Q Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 843 (957)
+++..|..++.+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 299 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999999999999999999998777 889999999999999885
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.3e-29 Score=277.46 Aligned_cols=237 Identities=26% Similarity=0.391 Sum_probs=160.4
Q ss_pred CccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCC
Q 002167 107 SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL 186 (957)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 186 (957)
.+..+++|++|+++++.+.. ++. + ..+++|++|++++|.++ .+|. +.. +++|++|++++|.++. ++ .+.++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~--~~~-~-~~~~~L~~L~l~~n~i~-~~~~-~~~-l~~L~~L~L~~n~i~~-~~-~~~~l 109 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS--IQG-I-EYLTNLEYLNLNGNQIT-DISP-LSN-LVKLTNLYIGTNKITD-IS-ALQNL 109 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC--CTT-G-GGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred cchhcccccEEEEeCCcccc--chh-h-hhcCCccEEEccCCccc-cchh-hhc-CCcCCEEEccCCcccC-ch-HHcCC
Confidence 45577888888888888754 333 4 77888888888888887 5665 554 8888888888888775 33 57888
Q ss_pred CCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEE
Q 002167 187 HQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYL 266 (957)
Q Consensus 187 ~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L 266 (957)
++|++|++++|.+. .++. +. .+++|++|++++|.....++ .+..+++|++|++++|.+. .++. +.. +++|++|
T Consensus 110 ~~L~~L~l~~n~i~-~~~~-~~-~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~-~~~-l~~L~~L 182 (347)
T 4fmz_A 110 TNLRELYLNEDNIS-DISP-LA-NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTP-IAN-LTDLYSL 182 (347)
T ss_dssp TTCSEEECTTSCCC-CCGG-GT-TCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGG-GGG-CTTCSEE
T ss_pred CcCCEEECcCCccc-Cchh-hc-cCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-Cchh-hcc-CCCCCEE
Confidence 88888888888877 3444 44 78888888888886554433 3777888888888888776 3333 333 7788888
Q ss_pred ECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCc
Q 002167 267 DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFS 346 (957)
Q Consensus 267 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 346 (957)
++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+.
T Consensus 183 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 256 (347)
T 4fmz_A 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256 (347)
T ss_dssp ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC
Confidence 888887764322 6777777777777777765433 6677777777777777664322 556666666666666555
Q ss_pred ccccchhhhcCCCCcEEEcccc
Q 002167 347 GSVELYDFAKLKNLKVLSLSNI 368 (957)
Q Consensus 347 ~~~~~~~l~~l~~L~~L~L~~~ 368 (957)
+. ..+..+++|+.|++++|
T Consensus 257 ~~---~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 257 DI---NAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CC---GGGTTCTTCCEEECCSS
T ss_pred CC---hhHhcCCCcCEEEccCC
Confidence 31 22334444444444444
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=5.2e-29 Score=274.67 Aligned_cols=288 Identities=20% Similarity=0.241 Sum_probs=219.6
Q ss_pred CCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCC
Q 002167 499 SIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGN 578 (957)
Q Consensus 499 ~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 578 (957)
+++.++++++.++ .+|..+. ..+++|++++|++.+..+..+..+++|++|++++|++++..|..+.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCcc-ccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 5888888888887 5665543 4788999999988887788888999999999999999988888899999999999999
Q ss_pred CccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCc--cCCCccccCCCCCcEEeCCCCccccCc
Q 002167 579 NNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLK--GPLPPSLVNCQYLEVLDVGNNQIDDTF 656 (957)
Q Consensus 579 n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~ls~n~l~~~~ 656 (957)
|.++ .+|..+. ++|++|++++|.+.+..+..|..+++|+.|++++|.++ +..|..+..+ +|+.|++++|++++ +
T Consensus 112 n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l 187 (332)
T 2ft3_A 112 NHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-I 187 (332)
T ss_dssp SCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-C
T ss_pred CcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-c
Confidence 9988 5666554 78999999999998777777888999999999999886 3667778877 88999999998886 4
Q ss_pred cccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCC
Q 002167 657 PYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSS 736 (957)
Q Consensus 657 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 736 (957)
|..+. ++|++|++++|.+.+..+... ..+++|+.|++++|++++..|..+
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l--~~l~~L~~L~L~~N~l~~~~~~~~-------------------------- 237 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQAIELEDL--LRYSKLYRLGLGHNQIRMIENGSL-------------------------- 237 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCCCCTTSS--TTCTTCSCCBCCSSCCCCCCTTGG--------------------------
T ss_pred Ccccc--CCCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCCcCChhHh--------------------------
Confidence 44333 678888888888766554433 456777888888887776554321
Q ss_pred CccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhc------cCCCE
Q 002167 737 NYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNL------TELES 810 (957)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L------~~L~~ 810 (957)
..+++|+.|+|++|+++ .+|..++.+++|+.|+|++|++++..+..|... .+|+.
T Consensus 238 ------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~ 298 (332)
T 2ft3_A 238 ------------------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298 (332)
T ss_dssp ------------------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSE
T ss_pred ------------------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccc
Confidence 11466777888888877 677777778888888888888877666666543 56778
Q ss_pred EECCCCccc--ccCcccCcCCCCCCeEECccCc
Q 002167 811 LDLSSNKLA--GRIPTQLASLNYLSVLNLSNNQ 841 (957)
Q Consensus 811 L~Ls~N~l~--g~ip~~l~~l~~L~~L~ls~N~ 841 (957)
|++++|++. +..|..+..++.|+.+++++|+
T Consensus 299 L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 299 ISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eEeecCcccccccCcccccccchhhhhhccccc
Confidence 888888776 5666777777888888887774
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.4e-28 Score=271.02 Aligned_cols=197 Identities=21% Similarity=0.235 Sum_probs=135.1
Q ss_pred CCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCC
Q 002167 499 SIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGN 578 (957)
Q Consensus 499 ~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 578 (957)
+++.++++++.++ .+|..+. ..+++|++++|++++..+..+..+++|++|++++|++++..|..+.++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCcc-ccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 5677777777776 4554432 3677888888888777777788888888888888888877788888888888888888
Q ss_pred CccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCcc--CCCccccCCCCCcEEeCCCCccccCc
Q 002167 579 NNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKG--PLPPSLVNCQYLEVLDVGNNQIDDTF 656 (957)
Q Consensus 579 n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~ls~n~l~~~~ 656 (957)
|+++ .+|..+. ++|++|++++|.+++..+..|..+++|+.|++++|.++. ..+..+.++++|++|++++|.++..
T Consensus 110 n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l- 186 (330)
T 1xku_A 110 NQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI- 186 (330)
T ss_dssp SCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-
T ss_pred CcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-
Confidence 8887 5555443 678888888888887777777778888888888887753 5566777777777777777777643
Q ss_pred cccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcC
Q 002167 657 PYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTG 704 (957)
Q Consensus 657 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g 704 (957)
|..+. ++|++|++++|++.+..+... ..+++|+.|++++|++++
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASL--KGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGG--TTCTTCCEEECCSSCCCE
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHh--cCCCCCCEEECCCCcCce
Confidence 33222 455555555555544333222 334455555555555444
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=7.1e-32 Score=312.48 Aligned_cols=392 Identities=19% Similarity=0.157 Sum_probs=241.3
Q ss_pred CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCC----CcchhccCCCCCCEEEccCCcCCCCCchhhhhCCC-
Q 002167 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIG----HIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNIT- 212 (957)
Q Consensus 138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~- 212 (957)
++|++|++++|++++.....+...+++|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4567777777777643334433347788888888887764 34666777888888888888876555555555565
Q ss_pred ---CCcEEEccCCCCCC----CCCcccCCCCcccEEeccCCCCccccchhHhhh----ccCCcEEECcCCcCCccC----
Q 002167 213 ---QLAYLDLSSNSFSG----HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNN----ITQLAYLDLSSNGFSGHI---- 277 (957)
Q Consensus 213 ---~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~----l~~L~~L~Ls~n~l~~~~---- 277 (957)
+|++|++++|.+++ .++..+.++++|++|++++|.+.+..+..+... .++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888874 347778888889999998888875555544432 346888888888887633
Q ss_pred cccccCcCCCcEEEeccCcCcccCCcccc-----ccCcCceeeccCCcCCCC----CCcchhcccCCceEecCCCCCccc
Q 002167 278 PSSFSNLQQLLWLNLEYNNFVGKIPDMFT-----NLTQLSFLGLAYNELIGS----IPSSIFELLNLTEIYLSFSNFSGS 348 (957)
Q Consensus 278 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~ 348 (957)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 45566778888888888887654444333 245788888888877653 455666677777777777766532
Q ss_pred ccchhhhcCCCCcEEEcccccccccccccCCCccccccccccccccCCC-----cChhhhcCCCCCEEECcCCcCCCCCC
Q 002167 349 VELYDFAKLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISE-----FPDNLRTQHQLELLDLSENQIGGRIP 423 (957)
Q Consensus 349 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----lp~~l~~~~~L~~L~Ls~n~l~~~~p 423 (957)
... .+.. .....+++|++|++++|.++. ++..+..+++|++|++++|.+++..+
T Consensus 243 ~~~-~l~~--------------------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 243 GMA-ELCP--------------------GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHH-HHHH--------------------HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHH-HHHH--------------------HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 110 0000 000123344444444444443 56667778888888888887765444
Q ss_pred hhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCC----CCccccCCCC
Q 002167 424 SWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGE----IPSSFCNLSS 499 (957)
Q Consensus 424 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~----~p~~l~~l~~ 499 (957)
..+...- ....++|+.|++++|.+++. ++..+..+++
T Consensus 302 ~~l~~~l---------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 342 (461)
T 1z7x_W 302 RLLCETL---------------------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342 (461)
T ss_dssp HHHHHHH---------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred HHHHHHh---------------------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence 3333210 00013445555555555443 3445556677
Q ss_pred CCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCC-CCCCccEEEccCCcCCC----CCCccccCCCCCCeE
Q 002167 500 IQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNA-KGCKLTYLRLSGNHLEG----PLPPSLTNCVKLQFL 574 (957)
Q Consensus 500 L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L 574 (957)
|++|++++|.+++..+..+.. .+. ..++|++|++++|++++ .+|..+..+++|++|
T Consensus 343 L~~L~Ls~n~i~~~~~~~l~~-------------------~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 343 LLELQISNNRLEDAGVRELCQ-------------------GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHH-------------------HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred ccEEEccCCccccccHHHHHH-------------------HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 777777777776443322211 000 13466777777776664 456666677777777
Q ss_pred EcCCCccccccCcc----cc--CCcccEEECCCCcCCCCC
Q 002167 575 DVGNNNLSGQIPEC----LG--NSTLQVLDMRMNNFSGSL 608 (957)
Q Consensus 575 ~Ls~n~l~~~~p~~----~~--~~~L~~L~Ls~n~l~~~~ 608 (957)
++++|++++.-... +. ..+|+.|++.++.+....
T Consensus 404 ~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred ECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence 77777766431111 11 135777777777665433
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=5.5e-32 Score=313.39 Aligned_cols=388 Identities=19% Similarity=0.160 Sum_probs=209.3
Q ss_pred CCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCC----CCCcccCCCCcccEEeccCCCCccccchhHhhhcc---
Q 002167 189 LRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSG----HIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNIT--- 261 (957)
Q Consensus 189 L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~--- 261 (957)
|++|++++|+++......++..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+...++
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 84 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 84 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence 44444444444322222222244555555555555442 12344555566666666666655444444444444
Q ss_pred -CCcEEECcCCcCCc----cCcccccCcCCCcEEEeccCcCcccCCcccc-----ccCcCceeeccCCcCCCCC----Cc
Q 002167 262 -QLAYLDLSSNGFSG----HIPSSFSNLQQLLWLNLEYNNFVGKIPDMFT-----NLTQLSFLGLAYNELIGSI----PS 327 (957)
Q Consensus 262 -~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~~----p~ 327 (957)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.. +.
T Consensus 85 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 85 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 46666666666653 3455666666777777777666543333222 2345777777777665432 34
Q ss_pred chhcccCCceEecCCCCCcccccchhhh----cCCCCcEEEcccccccccccccCCCccccccccccccccCCC-----c
Q 002167 328 SIFELLNLTEIYLSFSNFSGSVELYDFA----KLKNLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISE-----F 398 (957)
Q Consensus 328 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~----~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~-----l 398 (957)
.+..+++|++|++++|.+.+........ ..++|+.|++++| .++. +
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-------------------------~l~~~~~~~l 219 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-------------------------GVTSDNCRDL 219 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-------------------------CCBTTHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-------------------------CCcHHHHHHH
Confidence 4445566666666666654221111000 1223444444333 3332 4
Q ss_pred ChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccE
Q 002167 399 PDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVS 478 (957)
Q Consensus 399 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~ 478 (957)
+..+..+++|++|++++|.+++.....+...- ....++|++
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~---------------------------------------~~~~~~L~~ 260 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGL---------------------------------------LHPSSRLRT 260 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH---------------------------------------TSTTCCCCE
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHH---------------------------------------hcCCCCceE
Confidence 55666677777777777766532221111100 000134444
Q ss_pred EEeccCCccCC----CCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccC
Q 002167 479 FSISNNSLTGE----IPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSG 554 (957)
Q Consensus 479 L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 554 (957)
|++++|.+++. ++..+..+++|++|++++|.+++..+..+... .....++|++|++++
T Consensus 261 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~------------------l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET------------------LLEPGCQLESLWVKS 322 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH------------------HTSTTCCCCEEECTT
T ss_pred EECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH------------------hccCCccceeeEcCC
Confidence 44455544432 34455566777777777776654322221110 001124677777777
Q ss_pred CcCCCC----CCccccCCCCCCeEEcCCCccccccCcccc------CCcccEEECCCCcCCC----CCccccccCCCccE
Q 002167 555 NHLEGP----LPPSLTNCVKLQFLDVGNNNLSGQIPECLG------NSTLQVLDMRMNNFSG----SLPQTFAKSCVLVS 620 (957)
Q Consensus 555 n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~------~~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~ 620 (957)
|.+++. ++..+..+++|++|++++|.+++..+..+. .++|++|++++|.+++ .+|..+..+++|++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 777654 455667778888888888888765444332 3578888888888875 66777777888888
Q ss_pred EEccCCcCccCCCcc----c-cCCCCCcEEeCCCCccccCccc
Q 002167 621 LNLNGNRLKGPLPPS----L-VNCQYLEVLDVGNNQIDDTFPY 658 (957)
Q Consensus 621 L~Ls~n~l~~~~p~~----l-~~l~~L~~L~ls~n~l~~~~p~ 658 (957)
|++++|++++.-... + ....+|+.|++.++.+....++
T Consensus 403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 888888876531111 1 1234677777777666544443
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.5e-27 Score=262.94 Aligned_cols=222 Identities=21% Similarity=0.287 Sum_probs=137.5
Q ss_pred CCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccc-cccceeecccccccCcCCCcCCCCCCccEEE
Q 002167 473 PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYLR 551 (957)
Q Consensus 473 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 551 (957)
+++++.|++++|.+++..|..|.++++|++|++++|.+++..|..+.. .+|++|++++|+++ .+|..+. ++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 345566666666666555666666777777777777766555555443 36666666666666 3333333 5677777
Q ss_pred ccCCcCCCCCCccccCCCCCCeEEcCCCcccc--ccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCc
Q 002167 552 LSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG--QIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLK 629 (957)
Q Consensus 552 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 629 (957)
+++|++.+..+..+.++++|++|++++|.++. ..|..+...+|++|++++|++++ +|..+. ++|++|++++|.++
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC
Confidence 77777776666667777777777777777742 44544444467777777777664 444332 56777777777777
Q ss_pred cCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCc
Q 002167 630 GPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLT 703 (957)
Q Consensus 630 ~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~ 703 (957)
+..+..+..+++|+.|++++|++++..+.++..+++|++|++++|++. .+|... ..+++|+.|++++|+++
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l--~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL--PDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG--GGCTTCCEEECCSSCCC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh--hcCccCCEEECCCCCCC
Confidence 666667777777777777777777766666666666666666666554 222221 33444444444444444
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=4.7e-27 Score=258.85 Aligned_cols=196 Identities=24% Similarity=0.302 Sum_probs=96.2
Q ss_pred CCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCcccccc-ccceeecccccccCcCCCcCCCCCCccEEE
Q 002167 473 PPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNS-TLETLDLRMNNFQGSIPQTNAKGCKLTYLR 551 (957)
Q Consensus 473 ~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 551 (957)
++.++.|++++|.+++..+..|.++++|++|++++|.+++..|..+... +|++|++++|+++ .+|..+. ++|++|+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 3455566666666665555556666666666666666665545444332 5555555555554 2232222 4555555
Q ss_pred ccCCcCCCCCCccccCCCCCCeEEcCCCcccc--ccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcC
Q 002167 552 LSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSG--QIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRL 628 (957)
Q Consensus 552 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l 628 (957)
+++|++++..+..+.++++|++|++++|.+.. ..+..+.. ++|++|++++|.++. +|..+. ++|++|++++|++
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l 204 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKI 204 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcC
Confidence 55555555444455555555555555555532 33333332 444444444444442 222221 3444444444444
Q ss_pred ccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccc
Q 002167 629 KGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSN 674 (957)
Q Consensus 629 ~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n 674 (957)
++..|..+..+++|++|++++|++++..+.++..+++|++|++++|
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 4444444444444444444444444443333444333333333333
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.3e-27 Score=262.65 Aligned_cols=257 Identities=19% Similarity=0.202 Sum_probs=169.1
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEcc
Q 002167 546 KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLN 624 (957)
Q Consensus 546 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls 624 (957)
+|++|++++|++++..+..+.++++|++|++++|++++..|..+.. ++|++|++++|++++..+..|..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 4555555555555444444555555555555555555444444443 555666666666554444446666666666666
Q ss_pred CCcCccCCC-ccccCCCCCcEEeCCCC-ccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcC
Q 002167 625 GNRLKGPLP-PSLVNCQYLEVLDVGNN-QIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQL 702 (957)
Q Consensus 625 ~n~l~~~~p-~~l~~l~~L~~L~ls~n-~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l 702 (957)
+|++++..+ ..+.++++|++|++++| .+.+..+..+..+++|++|++++|++.+..+... ..+++|+.|++++|++
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMKQH 210 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECSCS
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecCCCCcc
Confidence 666664332 35666666666666666 3555555566666677777777776666555443 4466777777777776
Q ss_pred cCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCccccc---
Q 002167 703 TGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVG--- 779 (957)
Q Consensus 703 ~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~--- 779 (957)
+ .+|... ...+++|+.|++++|++++..+..+.
T Consensus 211 ~-~~~~~~-------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 211 I-LLLEIF-------------------------------------------VDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp T-THHHHH-------------------------------------------HHHTTTEEEEEEESCBCTTCCCC------
T ss_pred c-cchhhh-------------------------------------------hhhcccccEEECCCCcccccccccccccc
Confidence 4 233221 12256788889999988886665543
Q ss_pred ccCCCcEEECCCCcCCC----CCchhhhhccCCCEEECCCCcccccCccc-CcCCCCCCeEECccCcccccCCCC
Q 002167 780 KLNSLKSLNISHNNLTG----CIPSSLRNLTELESLDLSSNKLAGRIPTQ-LASLNYLSVLNLSNNQLEGPIPGG 849 (957)
Q Consensus 780 ~l~~L~~L~Ls~N~l~~----~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~g~ip~~ 849 (957)
..+.++.++|++|.+++ .+|+.++.+++|++||+++|+++ .+|.. +..+++|++|++++|+++|.+|.-
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 45678889999998887 47888999999999999999999 56655 589999999999999999998843
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.8e-29 Score=300.44 Aligned_cols=443 Identities=14% Similarity=0.101 Sum_probs=190.5
Q ss_pred CCccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCC--CCCCch-----------hhcCCC
Q 002167 72 DCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNG--SKISSG-----------FTDQFP 138 (957)
Q Consensus 72 ~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~--~~i~~~-----------~~~~l~ 138 (957)
-|++|.++.+... . .+.+..+ ....++. .+..+++|++|+|+++.... ..+|.. ++..++
T Consensus 40 vck~W~~~~~~~~-~---~l~~~~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 112 (592)
T 3ogk_B 40 VCRRWFKIDSETR-E---HVTMALC-YTATPDR--LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112 (592)
T ss_dssp SCHHHHHHHHHHC-C---EEEESCG-GGSCHHH--HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred HhHHHHHhhhccc-c---EEEEeec-cccChHH--HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCC
Confidence 3558999865322 1 2233322 1111111 34567777777776643210 001111 112455
Q ss_pred CCcEEECCCCccCccCchhhhhcCCC-CCEEEccCCcC-CC-CcchhccCCCCCCEEEccCCcCCCCCch---hhhhCCC
Q 002167 139 SLTLLDLCSCNFTGSIPPSLGNNITQ-LAYLDLSINSF-IG-HIPSSFSNLHQLRHLDLQSNNFVGKIPA---SLGNNIT 212 (957)
Q Consensus 139 ~L~~L~Ls~n~l~~~ip~~l~~~l~~-L~~L~Ls~n~l-~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~~l~ 212 (957)
+|++|+|++|.+++..+..+...+++ |++|+|++|.. .. .++....++++|++|+|++|.+.+.-.. .+...++
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 192 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC
Confidence 55555555555554444444331222 55555555431 10 1112223455555555555544332111 1112445
Q ss_pred CCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEe
Q 002167 213 QLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNL 292 (957)
Q Consensus 213 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 292 (957)
+|++|++++|.+++... +.++..+.. +++|++|++++|.+.+ ++..+..+++|++|++
T Consensus 193 ~L~~L~L~~n~~~~~~~--------------------~~l~~~~~~-~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l 250 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISP--------------------KDLETIARN-CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCG 250 (592)
T ss_dssp CCCEEECTTCCCSSCCH--------------------HHHHHHHHH-CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEE
T ss_pred CccEEEeeccCCCccCH--------------------HHHHHHHhh-CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcc
Confidence 55555555555442111 112222222 4444444444444442 3344444444555544
Q ss_pred ccCcCc---ccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEccccc
Q 002167 293 EYNNFV---GKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS 369 (957)
Q Consensus 293 ~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~ 369 (957)
+.+... +..+..+..+++|+.|+++++. .+.+|..+..+++|++|++++|.+.+......+..+++|+.|+++++.
T Consensus 251 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~ 329 (592)
T 3ogk_B 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVI 329 (592)
T ss_dssp CBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGG
T ss_pred cccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCcc
Confidence 432111 1222334444555555555432 223444444555555555555554332222234455555555555221
Q ss_pred ccccccccCCCcccccccccccc----------c-cCC--CcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceE
Q 002167 370 LSVSTKLTANSSFPNLSALDLSA----------C-NIS--EFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIE 436 (957)
Q Consensus 370 ~~~~~~~~~~~~l~~L~~L~L~~----------~-~l~--~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~ 436 (957)
...........+++|++|++++ | .++ .++.....+++|++|+++.+.+++..+..+.. .+++|+.
T Consensus 330 -~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~ 407 (592)
T 3ogk_B 330 -GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT-YLKNLCD 407 (592)
T ss_dssp -HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH-HCCSCCE
T ss_pred -CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh-hCCCCcE
Confidence 1110001111234444444442 2 222 12223345677777777666666544444432 1233333
Q ss_pred EECCCcccCCCCCCCCCccceeeccCccCCCCCCCCCCCccEEEeccCCccCC-----CCccccCCCCCCEEEcccCc--
Q 002167 437 LDLSRNFLTSIDHLPWKNLEYLHLDSNSLQGSLPDLPPHMVSFSISNNSLTGE-----IPSSFCNLSSIQYLDLSNNS-- 509 (957)
Q Consensus 437 L~Ls~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-----~p~~l~~l~~L~~L~L~~n~-- 509 (957)
|+++.+. ..|.+++. ++..+..+++|++|++++|.
T Consensus 408 L~l~~~~--------------------------------------~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~ 449 (592)
T 3ogk_B 408 FRLVLLD--------------------------------------REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG 449 (592)
T ss_dssp EEEEECS--------------------------------------CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGG
T ss_pred EEEeecC--------------------------------------CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCC
Confidence 3332110 02223321 22224456666666665433
Q ss_pred CccCCCcccc--ccccceeecccccccC-cCCCcCCCCCCccEEEccCCcCCCC-CCccccCCCCCCeEEcCCCccccc
Q 002167 510 LSGQIPQCLG--NSTLETLDLRMNNFQG-SIPQTNAKGCKLTYLRLSGNHLEGP-LPPSLTNCVKLQFLDVGNNNLSGQ 584 (957)
Q Consensus 510 l~~~~p~~~~--~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~ 584 (957)
+++..+..+. .++|++|++++|++++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|++++.
T Consensus 450 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 450 LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 3332222221 2245555555555543 2233334456666666666665432 233334566666666666666543
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.6e-26 Score=253.35 Aligned_cols=226 Identities=19% Similarity=0.266 Sum_probs=211.0
Q ss_pred CCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCc
Q 002167 136 QFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLA 215 (957)
Q Consensus 136 ~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~ 215 (957)
..+++++|+|++|.+. .+|..++. +++|++|+|++|.+. .+|..++++++|++|++++|.+. .+|..+. ++++|+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCC
T ss_pred cccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCC
Confidence 4588999999999998 99999998 999999999999999 88999999999999999999998 8899887 899999
Q ss_pred EEEccCCCCCCCCCcccCC---------CCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCC
Q 002167 216 YLDLSSNSFSGHIPSSFSN---------LQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQ 286 (957)
Q Consensus 216 ~L~Ls~n~l~~~~p~~l~~---------l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 286 (957)
+|++++|++.+.+|..++. +++|++|++++|+++ .+|..+.. +++|++|++++|.+++ +|..+..+++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l~~-l~~~l~~l~~ 230 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLSA-LGPAIHHLPK 230 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCCCC-CCGGGGGCTT
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCCCc-CchhhccCCC
Confidence 9999999999899988765 999999999999998 99998877 9999999999999995 6778999999
Q ss_pred CcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcc
Q 002167 287 LLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLS 366 (957)
Q Consensus 287 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 366 (957)
|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.++. .+..+++|+.+++.
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVP 309 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEECC
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999988774 57899999999998
Q ss_pred cccc
Q 002167 367 NISL 370 (957)
Q Consensus 367 ~~~~ 370 (957)
.+.+
T Consensus 310 ~~~~ 313 (328)
T 4fcg_A 310 PHLQ 313 (328)
T ss_dssp GGGS
T ss_pred HHHH
Confidence 7764
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3.5e-26 Score=249.03 Aligned_cols=233 Identities=25% Similarity=0.324 Sum_probs=166.3
Q ss_pred CCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccc--cCccc-cCCcccEEECCCCcCCCCCccccccCCCccEE
Q 002167 545 CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQ--IPECL-GNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSL 621 (957)
Q Consensus 545 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 621 (957)
++|++|++++|+++...+..+.++++|++|++++|.++.. .|..+ ..++|++|++++|.+. .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 4566666666666644444466667777777777766522 12222 2366666666666666 345556677777777
Q ss_pred EccCCcCccCCC-ccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCC
Q 002167 622 NLNGNRLKGPLP-PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHN 700 (957)
Q Consensus 622 ~Ls~n~l~~~~p-~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N 700 (957)
++++|++++..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------- 165 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--------------------- 165 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG---------------------
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc---------------------
Confidence 777777765544 4666777777777777777666666665555555555555544321
Q ss_pred cCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccc
Q 002167 701 QLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGK 780 (957)
Q Consensus 701 ~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~ 780 (957)
.+|..+ ..+++|+.|+|++|++++..|..++.
T Consensus 166 ----~~~~~~--------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~ 197 (306)
T 2z66_A 166 ----FLPDIF--------------------------------------------TELRNLTFLDLSQCQLEQLSPTAFNS 197 (306)
T ss_dssp ----EECSCC--------------------------------------------TTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred ----cchhHH--------------------------------------------hhCcCCCEEECCCCCcCCcCHHHhcC
Confidence 122110 11467888899999998888899999
Q ss_pred cCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCC-CCCCeEECccCcccccCC
Q 002167 781 LNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASL-NYLSVLNLSNNQLEGPIP 847 (957)
Q Consensus 781 l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~g~ip 847 (957)
+++|+.|+|++|++++..+..+..+++|++||+++|++++.+|..+..+ ++|++|++++|+++|.++
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 9999999999999999888889999999999999999999999999998 499999999999998765
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.6e-27 Score=262.26 Aligned_cols=282 Identities=17% Similarity=0.187 Sum_probs=207.0
Q ss_pred CCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEE
Q 002167 496 NLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLD 575 (957)
Q Consensus 496 ~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 575 (957)
.++.....+++++.++ .+|..+. .+|++|++++|++++..+..+..+++|++|++++|++++..|..+.++++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 3455556677777776 4555433 2677777777777766666777788888888888888877777788888888888
Q ss_pred cCCCccccccCccccC-CcccEEECCCCcCCCCCc-cccccCCCccEEEccCCc-CccCCCccccCCCCCcEEeCCCCcc
Q 002167 576 VGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLP-QTFAKSCVLVSLNLNGNR-LKGPLPPSLVNCQYLEVLDVGNNQI 652 (957)
Q Consensus 576 Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ls~n~l 652 (957)
+++|++++..+..+.. ++|++|++++|++++..+ ..+..+++|++|++++|+ +.+..+..+.++++|++|++++|++
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 8888887544443544 788888888888875433 467788888888888884 6655567788888888888888888
Q ss_pred ccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceeccccc
Q 002167 653 DDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRL 732 (957)
Q Consensus 653 ~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~ 732 (957)
++..|..+..+++|++|++++|.+....+.. ...+++|+.|++++|++++..+..+..
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~l~~-------------------- 244 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIF--VDVTSSVECLELRDTDLDTFHFSELST-------------------- 244 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHH--HHHTTTEEEEEEESCBCTTCCCC------------------------
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhh--hhhcccccEEECCCCcccccccccccc--------------------
Confidence 8877888888888888888888763322111 123678888999998888755432100
Q ss_pred CCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCc----cCcccccccCCCcEEECCCCcCCCCCchh-hhhccC
Q 002167 733 PGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQR----KIPEVVGKLNSLKSLNISHNNLTGCIPSS-LRNLTE 807 (957)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~-l~~L~~ 807 (957)
......++.++|+++.+++ .+|+.++.+++|+.|+|++|+++ .+|.. |+++++
T Consensus 245 ---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~ 302 (353)
T 2z80_A 245 ---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTS 302 (353)
T ss_dssp -----------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred ---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCC
Confidence 0113556778888888876 57888999999999999999999 45655 699999
Q ss_pred CCEEECCCCcccccCc
Q 002167 808 LESLDLSSNKLAGRIP 823 (957)
Q Consensus 808 L~~L~Ls~N~l~g~ip 823 (957)
|++|+|++|++++..|
T Consensus 303 L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 303 LQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred CCEEEeeCCCccCcCC
Confidence 9999999999998766
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=9.9e-26 Score=259.47 Aligned_cols=252 Identities=20% Similarity=0.217 Sum_probs=164.7
Q ss_pred ceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCc
Q 002167 524 ETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNN 603 (957)
Q Consensus 524 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~ 603 (957)
..++.++..++ .+|..+. +++++|+|++|++++..+..|.++++|++|++++|.+++..|.
T Consensus 57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~---------------- 117 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG---------------- 117 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----------------
T ss_pred cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChh----------------
Confidence 44555555444 2333322 3555555555555555555555555555555555555544444
Q ss_pred CCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCC
Q 002167 604 FSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDT 683 (957)
Q Consensus 604 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~ 683 (957)
.|.++++|++|+|++|++++..+..|.++++|++|++++|++....+..|..+++|++|++++|...+.++..
T Consensus 118 -------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 118 -------AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp -------TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred -------hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh
Confidence 4444444444444444444433344444555555555555544444444455555555555554333333321
Q ss_pred CCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEE
Q 002167 684 KTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATI 763 (957)
Q Consensus 684 ~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 763 (957)
....+++|+.|++++|++++. |.. ..+++|+.|
T Consensus 191 -~~~~l~~L~~L~L~~n~l~~~-~~~---------------------------------------------~~l~~L~~L 223 (452)
T 3zyi_A 191 -AFEGLFNLKYLNLGMCNIKDM-PNL---------------------------------------------TPLVGLEEL 223 (452)
T ss_dssp -TTTTCTTCCEEECTTSCCSSC-CCC---------------------------------------------TTCTTCCEE
T ss_pred -hccCCCCCCEEECCCCccccc-ccc---------------------------------------------cccccccEE
Confidence 123456667777777766642 210 015788999
Q ss_pred EcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCccc
Q 002167 764 DLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE 843 (957)
Q Consensus 764 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 843 (957)
+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++.
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred ccCCC
Q 002167 844 GPIPG 848 (957)
Q Consensus 844 g~ip~ 848 (957)
+.+.-
T Consensus 304 CdC~~ 308 (452)
T 3zyi_A 304 CDCDI 308 (452)
T ss_dssp CSTTT
T ss_pred CCCCc
Confidence 87653
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=4.5e-26 Score=248.12 Aligned_cols=256 Identities=29% Similarity=0.414 Sum_probs=214.4
Q ss_pred ccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccC--
Q 002167 74 CSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFT-- 151 (957)
Q Consensus 74 c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~-- 151 (957)
|.|.+|.|... +++ .+|. . -.++|++|+|++|.+.. +|..+|..+++|++|++++|.+.
T Consensus 7 C~~~~l~c~~~------------~l~-~ip~--~--~~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~ 67 (306)
T 2z66_A 7 CSGTEIRCNSK------------GLT-SVPT--G--IPSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFK 67 (306)
T ss_dssp EETTEEECCSS------------CCS-SCCS--C--CCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCEE
T ss_pred eCCCEEEcCCC------------Ccc-cCCC--C--CCCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCcc
Confidence 78988888643 222 2332 2 23689999999999974 77776699999999999999987
Q ss_pred ccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcc
Q 002167 152 GSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSS 231 (957)
Q Consensus 152 ~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~ 231 (957)
+.+|..+.. +++|++|++++|.+. .+|..+.++++|++|++++|.+.+..+...+..+++|++|++++|.+++..+..
T Consensus 68 ~~~~~~~~~-~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 145 (306)
T 2z66_A 68 GCCSQSDFG-TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145 (306)
T ss_dssp EEEEHHHHS-CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT
T ss_pred cCccccccc-ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh
Confidence 333677776 999999999999987 467779999999999999999885444233348999999999999999888888
Q ss_pred cCCCCcccEEeccCCCCcc-ccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCc
Q 002167 232 FSNLQQLCYLDLDDNHFVG-EIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ 310 (957)
Q Consensus 232 l~~l~~L~~L~Ls~n~l~~-~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 310 (957)
+.++++|++|++++|.+.+ .+|..+.. +++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred cccCcCCCEEECCCCccccccchhHHhh-CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 9999999999999999986 46666665 999999999999999888889999999999999999999877778899999
Q ss_pred CceeeccCCcCCCCCCcchhccc-CCceEecCCCCCcccccc
Q 002167 311 LSFLGLAYNELIGSIPSSIFELL-NLTEIYLSFSNFSGSVEL 351 (957)
Q Consensus 311 L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~ 351 (957)
|++|++++|.+++..|..+..++ +|++|++++|.+.+..+.
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 99999999999988888888884 899999999998865443
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.3e-28 Score=265.34 Aligned_cols=249 Identities=20% Similarity=0.222 Sum_probs=158.9
Q ss_pred ccceeecccccccCcCCCcCCCCCCccEEEccCCcCC-CCCCcccc-------CCCCCCeEEcCCCccccccCccc--cC
Q 002167 522 TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLE-GPLPPSLT-------NCVKLQFLDVGNNNLSGQIPECL--GN 591 (957)
Q Consensus 522 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~ 591 (957)
+|++|++++|.+ .+|..+... |+.|++++|++. ..+|..+. ++++|++|++++|.+++.+|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 566666666666 444433322 566666666552 33444433 45556666666666655555543 22
Q ss_pred -CcccEEECCCCcCCCCCccccccC-----CCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcccccccccc
Q 002167 592 -STLQVLDMRMNNFSGSLPQTFAKS-----CVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLE 665 (957)
Q Consensus 592 -~~L~~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 665 (957)
++|++|++++|++++. |..+..+ ++|++|+|++|++++..|..|+++++|++|++++|++.+.++
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------- 190 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-------- 190 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--------
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--------
Confidence 5555555555555544 4444444 555555555555555444555555555555555555443211
Q ss_pred ccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCC--CchHHHhhhhccccCCCCCceecccccCCCCCccceEE
Q 002167 666 LQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV--LPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIF 743 (957)
Q Consensus 666 L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~--ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 743 (957)
.+.......+++|+.|++++|++++. ++..
T Consensus 191 --------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---------------------------------- 222 (312)
T 1wwl_A 191 --------------LISALCPLKFPTLQVLALRNAGMETPSGVCSA---------------------------------- 222 (312)
T ss_dssp --------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH----------------------------------
T ss_pred --------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHH----------------------------------
Confidence 11111124466777777777777641 1211
Q ss_pred EEEechhHHHHhhcccceEEEcccCccCccCc-ccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccC
Q 002167 744 LTMKGIDLQMERILTTFATIDLSSNRFQRKIP-EVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRI 822 (957)
Q Consensus 744 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~i 822 (957)
.+..+++|+.|||++|++++.+| ..+..+++|+.|+|++|+++ .+|..+. ++|++|||++|++++.
T Consensus 223 ---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~- 289 (312)
T 1wwl_A 223 ---------LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN- 289 (312)
T ss_dssp ---------HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-
T ss_pred ---------HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-
Confidence 12235789999999999999886 56677899999999999999 7888777 8999999999999987
Q ss_pred cccCcCCCCCCeEECccCccccc
Q 002167 823 PTQLASLNYLSVLNLSNNQLEGP 845 (957)
Q Consensus 823 p~~l~~l~~L~~L~ls~N~l~g~ 845 (957)
|. +..+++|++|++++|++++.
T Consensus 290 p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 290 PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hh-HhhCCCCCEEeccCCCCCCC
Confidence 66 89999999999999999874
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.7e-25 Score=256.56 Aligned_cols=252 Identities=20% Similarity=0.210 Sum_probs=165.5
Q ss_pred cceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCC
Q 002167 523 LETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMN 602 (957)
Q Consensus 523 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n 602 (957)
...++.++..++ .+|..+. ++++.|+|++|++.+..+..|.++++|++|+|++|.++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-------------------- 101 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-------------------- 101 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC--------------------
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC--------------------
Confidence 334455444444 2333322 34555555555555444455555555555555555554
Q ss_pred cCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCC
Q 002167 603 NFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGD 682 (957)
Q Consensus 603 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~ 682 (957)
+..+..|.++++|++|+|++|++++..+..|..+++|++|++++|++....+..|..+++|++|++++|...+.++.
T Consensus 102 ---~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 102 ---TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp ---EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred ---ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 44444455555555555555555544444455555555555555555544444555555555555555444333332
Q ss_pred CCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceE
Q 002167 683 TKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFAT 762 (957)
Q Consensus 683 ~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 762 (957)
. ....+++|+.|++++|+++. +|.. ..+++|+.
T Consensus 179 ~-~~~~l~~L~~L~L~~n~l~~-~~~~---------------------------------------------~~l~~L~~ 211 (440)
T 3zyj_A 179 G-AFEGLSNLRYLNLAMCNLRE-IPNL---------------------------------------------TPLIKLDE 211 (440)
T ss_dssp T-TTTTCSSCCEEECTTSCCSS-CCCC---------------------------------------------TTCSSCCE
T ss_pred c-hhhcccccCeecCCCCcCcc-cccc---------------------------------------------CCCcccCE
Confidence 1 12445666777777776653 2310 01578899
Q ss_pred EEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcc
Q 002167 763 IDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQL 842 (957)
Q Consensus 763 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l 842 (957)
|||++|++++..|..|.++++|+.|+|++|++++..|..|.++++|++|||++|++++..+..+..+++|+.|++++|++
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred cccCC
Q 002167 843 EGPIP 847 (957)
Q Consensus 843 ~g~ip 847 (957)
.+.+.
T Consensus 292 ~CdC~ 296 (440)
T 3zyj_A 292 NCNCD 296 (440)
T ss_dssp ECSST
T ss_pred cCCCC
Confidence 98765
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=6.5e-29 Score=297.29 Aligned_cols=187 Identities=19% Similarity=0.137 Sum_probs=83.4
Q ss_pred CCCCCcEEEccCCCCCCCCCcccCCC--CcccEEeccCCC-CccccchhHhhhccCCcEEECcCCcCCcc----Cccccc
Q 002167 210 NITQLAYLDLSSNSFSGHIPSSFSNL--QQLCYLDLDDNH-FVGEIPASLGNNITQLAYLDLSSNGFSGH----IPSSFS 282 (957)
Q Consensus 210 ~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~-l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~----~p~~l~ 282 (957)
.+++|++|+|++|.+++..+..++.. .+|++|++++|. +.......+...+++|++|++++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 44555555555554443333333332 225555555543 11000111122255555555555554433 222233
Q ss_pred CcCCCcEEEeccCcCc----ccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCC
Q 002167 283 NLQQLLWLNLEYNNFV----GKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLK 358 (957)
Q Consensus 283 ~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 358 (957)
.+++|++|++++|.+. +.++..+.++++|++|++++|.+.+ ++..+..+++|++|+++..... ..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~--~~-------- 258 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNED--IG-------- 258 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCC--TT--------
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccc--cc--------
Confidence 4455555555555544 1222233344555555555544442 3344444444444444421110 00
Q ss_pred CCcEEEcccccccccccccCCCccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCC
Q 002167 359 NLKVLSLSNISLSVSTKLTANSSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGG 420 (957)
Q Consensus 359 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~ 420 (957)
..........+++|+.|+++++....+|..+..+++|++|++++|.+++
T Consensus 259 -------------~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 259 -------------MPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307 (592)
T ss_dssp -------------CTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCH
T ss_pred -------------hHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCH
Confidence 0011122233445555555555445666666667777777777776543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=1.1e-25 Score=242.20 Aligned_cols=228 Identities=21% Similarity=0.224 Sum_probs=144.7
Q ss_pred cEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCC
Q 002167 548 TYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGN 626 (957)
Q Consensus 548 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n 626 (957)
++++.+++.++. +|..+ .++|++|++++|.+++..+..+.. ++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 456666665552 33322 245566666666655444444433 55555555555555554555555555555555555
Q ss_pred c-CccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCC
Q 002167 627 R-LKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV 705 (957)
Q Consensus 627 ~-l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ 705 (957)
+ +++..|..+..+++|++|++++|.+++..|..+..+ ++|+.|++++|++++.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------------------~~L~~L~l~~n~l~~~ 144 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL--------------------------AALQYLYLQDNALQAL 144 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC--------------------------TTCCEEECCSSCCCCC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC--------------------------cCCCEEECCCCccccc
Confidence 4 443334555555555555555555555444444444 4555555555555543
Q ss_pred CchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCc
Q 002167 706 LPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLK 785 (957)
Q Consensus 706 ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 785 (957)
.+..+ ..+++|+.|+|++|++++..+..++.+++|+
T Consensus 145 ~~~~~--------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 145 PDDTF--------------------------------------------RDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp CTTTT--------------------------------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CHhHh--------------------------------------------ccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 32110 1146677888888888876667788888888
Q ss_pred EEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCC
Q 002167 786 SLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPG 848 (957)
Q Consensus 786 ~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 848 (957)
.|+|++|++++..|..++.+++|++|++++|++++..|..+..+++|++|++++|++++.++.
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 888888888888888888888888888888888887777788888888888888888887664
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.8e-27 Score=259.64 Aligned_cols=247 Identities=21% Similarity=0.215 Sum_probs=193.0
Q ss_pred CCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCcc-CccCchhhh-------hcCCCCCEEEccCCcCCCCcch
Q 002167 110 FLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF-TGSIPPSLG-------NNITQLAYLDLSINSFIGHIPS 181 (957)
Q Consensus 110 ~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~ip~~l~-------~~l~~L~~L~Ls~n~l~~~~p~ 181 (957)
..++|++|++++|.+ .+|..+.. . |++|++++|.+ .+.+|..+. . +++|++|+|++|.+++.+|.
T Consensus 41 ~~~~L~~l~l~~n~l---~~p~~~~~-~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE---ADLGQFTD-I--IKSLSLKRLTVRAARIPSRILFGALRVLG-ISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEECTTHHHHCCTT---CCCHHHHH-H--HHHCCCCEEEEEEEECBHHHHHHHHHHHT-TSCCCEEEEEEEBCBSCCCC
T ss_pred cCCCceeEeeccccc---ccHHHHHH-H--HhhcccccccccCCCcCHHHHHHHHHhcC-cCCccEEEccCCcccchhHH
Confidence 345677888888887 37776633 2 88888888888 456777665 4 88899999999998888887
Q ss_pred hc--cCCCCCCEEEccCCcCCCCCchhhhhCC-----CCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCcccc--
Q 002167 182 SF--SNLHQLRHLDLQSNNFVGKIPASLGNNI-----TQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEI-- 252 (957)
Q Consensus 182 ~l--~~l~~L~~L~L~~n~l~~~~p~~l~~~l-----~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i-- 252 (957)
.+ ..+++|++|++++|.+++. |..+. .+ ++|++|++++|.+++..|..++++++|++|++++|++.+.+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 76 8889999999999988865 76665 55 88999999999998888888899999999999999887653
Q ss_pred chhH-hhhccCCcEEECcCCcCCc--cCc-ccccCcCCCcEEEeccCcCcccCC-ccccccCcCceeeccCCcCCCCCCc
Q 002167 253 PASL-GNNITQLAYLDLSSNGFSG--HIP-SSFSNLQQLLWLNLEYNNFVGKIP-DMFTNLTQLSFLGLAYNELIGSIPS 327 (957)
Q Consensus 253 p~~l-~~~l~~L~~L~Ls~n~l~~--~~p-~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~ 327 (957)
+..+ ...+++|++|++++|.+++ .++ ..+..+++|++|++++|.+.+..| ..+..+++|++|++++|.++ .+|.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence 3333 1348899999999998873 222 334577899999999999887664 45667889999999999888 7777
Q ss_pred chhcccCCceEecCCCCCcccccchhhhcCCCCcEEEccccccc
Q 002167 328 SIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNISLS 371 (957)
Q Consensus 328 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~~~ 371 (957)
.+. ++|++|++++|++++. +. +..+++|++|++++|.++
T Consensus 271 ~~~--~~L~~L~Ls~N~l~~~-p~--~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNRLDRN-PS--PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SCC--SEEEEEECCSSCCCSC-CC--TTTSCEEEEEECTTCTTT
T ss_pred hcc--CCceEEECCCCCCCCC-hh--HhhCCCCCEEeccCCCCC
Confidence 766 7899999999988865 32 778889999999988754
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.4e-24 Score=255.85 Aligned_cols=172 Identities=27% Similarity=0.312 Sum_probs=81.3
Q ss_pred ccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCC
Q 002167 476 MVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGN 555 (957)
Q Consensus 476 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 555 (957)
++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. ...+|++|+|++|++++ +|. .+++|++|++++|
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC--CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSC
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC--cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCC
Confidence 444455555444 3343332 45555555555554 2333 12345555555555442 222 3355555555555
Q ss_pred cCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCcc
Q 002167 556 HLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPS 635 (957)
Q Consensus 556 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 635 (957)
++++. |. .+++|+.|++++|++++ +|..+ ++|++|++++|++++ +|. .+++|+.|++++|.+++ +|
T Consensus 112 ~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~l--~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~-- 177 (622)
T 3g06_A 112 PLTHL-PA---LPSGLCKLWIFGNQLTS-LPVLP--PGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP-- 177 (622)
T ss_dssp CCCCC-CC---CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC--
T ss_pred cCCCC-CC---CCCCcCEEECCCCCCCc-CCCCC--CCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc--
Confidence 55532 22 34555555555555552 33321 455555555555553 222 23455555555555553 33
Q ss_pred ccCCCCCcEEeCCCCccccCccccccccccccEEEcccccc
Q 002167 636 LVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRF 676 (957)
Q Consensus 636 l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~ 676 (957)
..+++|+.|++++|.+++. |.. +++|+.|++++|.+
T Consensus 178 -~~~~~L~~L~Ls~N~l~~l-~~~---~~~L~~L~L~~N~l 213 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRL 213 (622)
T ss_dssp -CCCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCC
T ss_pred -ccCCCCcEEECCCCCCCCC-CCc---cchhhEEECcCCcc
Confidence 3345555555555555542 211 24444555555444
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.1e-24 Score=252.96 Aligned_cols=263 Identities=29% Similarity=0.338 Sum_probs=220.0
Q ss_pred CCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcC
Q 002167 498 SSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVG 577 (957)
Q Consensus 498 ~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 577 (957)
.+++.|++++|.++ .+|..+. .+|++|++++|+++. +|. .+++|++|++++|++++ +|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~-~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP-AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC-TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcC-ccChhhC-CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 46899999999998 7777665 699999999999984 454 56899999999999985 554 77999999999
Q ss_pred CCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcc
Q 002167 578 NNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP 657 (957)
Q Consensus 578 ~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 657 (957)
+|++++ +|. ..++|+.|++++|++++ +|.. +++|++|++++|++++ +|. ..++|+.|++++|.+++ +|
T Consensus 110 ~N~l~~-l~~--~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~ 177 (622)
T 3g06_A 110 SNPLTH-LPA--LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP 177 (622)
T ss_dssp SCCCCC-CCC--CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred CCcCCC-CCC--CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc
Confidence 999985 555 44789999999999985 5543 4899999999999985 454 34789999999999987 44
Q ss_pred ccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCC
Q 002167 658 YWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSN 737 (957)
Q Consensus 658 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 737 (957)
..+++|+.|++++|.+.+ ++. .+++|+.|++++|.++. +|..
T Consensus 178 ---~~~~~L~~L~Ls~N~l~~-l~~-----~~~~L~~L~L~~N~l~~-l~~~---------------------------- 219 (622)
T 3g06_A 178 ---MLPSGLQELSVSDNQLAS-LPT-----LPSELYKLWAYNNRLTS-LPAL---------------------------- 219 (622)
T ss_dssp ---CCCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSS-CCCC----------------------------
T ss_pred ---ccCCCCcEEECCCCCCCC-CCC-----ccchhhEEECcCCcccc-cCCC----------------------------
Confidence 457899999999999876 332 24789999999999874 3311
Q ss_pred ccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCc
Q 002167 738 YYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNK 817 (957)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (957)
+++|+.|+|++|++++ +| ..+++|+.|+|++|++++ +|. .+++|++|+|++|+
T Consensus 220 -------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 220 -------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp -------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred -------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCC
Confidence 3678999999999987 56 556899999999999995 665 67899999999999
Q ss_pred ccccCcccCcCCCCCCeEECccCcccccCCC
Q 002167 818 LAGRIPTQLASLNYLSVLNLSNNQLEGPIPG 848 (957)
Q Consensus 818 l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~ 848 (957)
++ .+|..+.++++|+.|++++|+++|.+|.
T Consensus 273 L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 273 LT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 99 7899999999999999999999998875
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=4.9e-27 Score=256.75 Aligned_cols=247 Identities=21% Similarity=0.183 Sum_probs=147.3
Q ss_pred CCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEE
Q 002167 543 KGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSL 621 (957)
Q Consensus 543 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 621 (957)
.+++|++|++++|++++..|..+..+++|++|++++|.+++..+ +.. ++|++|++++|.+++.. ..++|+.|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 34456666666666655555556666666666666666654433 222 55666666666555321 22556666
Q ss_pred EccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCc
Q 002167 622 NLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQ 701 (957)
Q Consensus 622 ~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~ 701 (957)
++++|++++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+.+..+... ...+++|+.|++++|.
T Consensus 105 ~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 105 HAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNF 180 (317)
T ss_dssp ECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSC
T ss_pred ECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH-hhccCcCCEEECCCCc
Confidence 66666665443322 3456666666666666555556556666666666555544332221 1134556666666666
Q ss_pred CcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCccccccc
Q 002167 702 LTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKL 781 (957)
Q Consensus 702 l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l 781 (957)
+++..+.. .+++|+.|+|++|++++. |..+..+
T Consensus 181 l~~~~~~~----------------------------------------------~l~~L~~L~Ls~N~l~~l-~~~~~~l 213 (317)
T 3o53_A 181 IYDVKGQV----------------------------------------------VFAKLKTLDLSSNKLAFM-GPEFQSA 213 (317)
T ss_dssp CCEEECCC----------------------------------------------CCTTCCEEECCSSCCCEE-CGGGGGG
T ss_pred Cccccccc----------------------------------------------ccccCCEEECCCCcCCcc-hhhhccc
Confidence 55421100 035677777777777754 4447777
Q ss_pred CCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCccc-ccCcccCcCCCCCCeEECc-cCcccccCCC
Q 002167 782 NSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLA-GRIPTQLASLNYLSVLNLS-NNQLEGPIPG 848 (957)
Q Consensus 782 ~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~ls-~N~l~g~ip~ 848 (957)
++|+.|+|++|++++ +|..+..+++|+.|++++|+++ +.+|..+..++.|+.++++ .+.++|..|.
T Consensus 214 ~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 788888888887773 5777777778888888888887 6777777777777777777 3456666553
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=2.6e-24 Score=231.54 Aligned_cols=224 Identities=23% Similarity=0.266 Sum_probs=117.0
Q ss_pred EEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEE
Q 002167 89 IGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYL 168 (957)
Q Consensus 89 ~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L 168 (957)
+.+++++.++.. +|. ...++|++|++++|.+++ ++...|..+++|++|++++|.+.+..|..+.. +++|++|
T Consensus 14 ~~~~c~~~~l~~-ip~----~~~~~l~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPV----GIPAASQRIFLHGNRISH--VPAASFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQL 85 (285)
T ss_dssp CEEECCSSCCSS-CCT----TCCTTCSEEECTTSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEE
T ss_pred eEEEcCcCCccc-CCc----CCCCCceEEEeeCCcCCc--cCHHHcccCCCCCEEECCCCccceeCHhhcCC-ccCCCEE
Confidence 455666666542 332 123466666666666644 33333356666666666666665444444544 6666666
Q ss_pred EccCCc-CCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCC
Q 002167 169 DLSINS-FIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNH 247 (957)
Q Consensus 169 ~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 247 (957)
++++|. +....|..+.++++|++|++++|.+.+..|..+. ++++|++|++++|.+++..+..++++++|++|++++|+
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 666664 4444455555666666666666655543333333 55556666665555554444445555555555555555
Q ss_pred CccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCC
Q 002167 248 FVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELI 322 (957)
Q Consensus 248 l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 322 (957)
++ .+|......+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 165 l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 165 IS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 55 333322222555555555555555444455555555555555555554443344444444444444444443
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=5.7e-24 Score=244.78 Aligned_cols=227 Identities=23% Similarity=0.252 Sum_probs=102.9
Q ss_pred CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL 217 (957)
Q Consensus 138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L 217 (957)
++|++|+|++|++++..|..+.. +++|++|+|++|.+.+..+..|.++++|++|+|++|.++ .+|...+.++++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCC-CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence 34444444444444333333333 444444444444444444444444444444444444444 2222222244444444
Q ss_pred EccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcC
Q 002167 218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNF 297 (957)
Q Consensus 218 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 297 (957)
+|++|.++...+..|.++++|++|++++|...+.++...+..+++|++|++++|.+++. | .+..+++|++|++++|.+
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcC
Confidence 44444444333334444444555554443333344433333344455555555544422 2 244444555555555555
Q ss_pred cccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEccccc
Q 002167 298 VGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNIS 369 (957)
Q Consensus 298 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~~ 369 (957)
.+..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCC
Confidence 4444444455555555555555544444444444455555555555444 2233334444445555554444
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=6.6e-27 Score=280.02 Aligned_cols=205 Identities=16% Similarity=0.102 Sum_probs=113.2
Q ss_pred CCCCCEEEccCCcCCCCcchhcc-CCCCCCEEEccCC-cCCCCCchhhhhCCCCCcEEEccCCCCCCCCCccc----CCC
Q 002167 162 ITQLAYLDLSINSFIGHIPSSFS-NLHQLRHLDLQSN-NFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSF----SNL 235 (957)
Q Consensus 162 l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~n-~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l----~~l 235 (957)
+++|++|+|++|.+++..+..+. .+++|++|++++| .+.......+..++++|++|++++|.+++..+..+ ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 56666666666666555444443 4666666666666 33322122233356677777777666554433333 355
Q ss_pred CcccEEeccCCC--CccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCc-------CcccCCcccc
Q 002167 236 QQLCYLDLDDNH--FVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNN-------FVGKIPDMFT 306 (957)
Q Consensus 236 ~~L~~L~Ls~n~--l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-------l~~~~p~~l~ 306 (957)
++|++|++++|. +.......+...+++|++|++++|...+.++..+..+++|++|+++.+. +.+ ++..+.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALS 262 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHh
Confidence 677777777775 2211122222336777777777773222356666677777777755442 222 233566
Q ss_pred ccCcCcee-eccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEEEcccc
Q 002167 307 NLTQLSFL-GLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVLSLSNI 368 (957)
Q Consensus 307 ~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~~ 368 (957)
++++|+.| .+.... .+.++..+..+++|++|++++|.+.+......+..+++|+.|++++|
T Consensus 263 ~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 263 GCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp TCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred cCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 67777777 333322 12344445566777777777777553332223445666666666655
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.5e-25 Score=259.36 Aligned_cols=235 Identities=21% Similarity=0.178 Sum_probs=110.2
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccC
Q 002167 546 KLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNG 625 (957)
Q Consensus 546 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~ 625 (957)
+|++|+|++|.+++..|..|..+++|++|+|++|.+++..| ....++|++|+|++|.+++.. ..++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcC
Confidence 34444444444444444444444444444444444443333 111144444444444444221 114455555555
Q ss_pred CcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCC
Q 002167 626 NRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV 705 (957)
Q Consensus 626 n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ 705 (957)
|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|++++|.+.+.++.... ..+++|+.|++++|.+++.
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTCCEEECTTSCCCEE
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-hhCCcccEEecCCCccccc
Confidence 555443322 234455555555555555555555555555555555554433222110 1233444444444444432
Q ss_pred CchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCc
Q 002167 706 LPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLK 785 (957)
Q Consensus 706 ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~ 785 (957)
.+.. .+++|+.|+|++|.+++..| .++.+++|+
T Consensus 185 ~~~~----------------------------------------------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~ 217 (487)
T 3oja_A 185 KGQV----------------------------------------------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVT 217 (487)
T ss_dssp ECCC----------------------------------------------CCTTCCEEECCSSCCCEECG-GGGGGTTCS
T ss_pred cccc----------------------------------------------cCCCCCEEECCCCCCCCCCH-hHcCCCCcc
Confidence 1100 02445555566665555333 355566666
Q ss_pred EEECCCCcCCCCCchhhhhccCCCEEECCCCccc-ccCcccCcCCCCCCeEECc
Q 002167 786 SLNISHNNLTGCIPSSLRNLTELESLDLSSNKLA-GRIPTQLASLNYLSVLNLS 838 (957)
Q Consensus 786 ~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~ls 838 (957)
.|+|++|.+++ +|..++.+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 218 ~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 66666666664 4555555666666666666665 4555555555555555554
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=6.5e-26 Score=247.79 Aligned_cols=245 Identities=22% Similarity=0.223 Sum_probs=193.7
Q ss_pred ccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCC
Q 002167 522 TLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRM 601 (957)
Q Consensus 522 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~ 601 (957)
+|++|++++|++++..|..+..+++|++|++++|++++..+ +..+++|++|++++|.+++..+ .++|++|++++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~ 108 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEECCC
Confidence 56666666666665555666777888888888888876544 7788888888888888874332 26888888888
Q ss_pred CcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccc-cccccccEEEcccccccccC
Q 002167 602 NNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWL-DVLLELQVLILRSNRFWGPI 680 (957)
Q Consensus 602 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~~L~L~~n~~~~~~ 680 (957)
|++++..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+.+..
T Consensus 109 n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 109 NNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp SCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 8888655443 5678899999999888777788888999999999999888777766 47889999999999887653
Q ss_pred CCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccc
Q 002167 681 GDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTF 760 (957)
Q Consensus 681 ~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 760 (957)
+. ..+++|+.|++++|++++..|. + ..+++|
T Consensus 186 ~~----~~l~~L~~L~Ls~N~l~~l~~~-~--------------------------------------------~~l~~L 216 (317)
T 3o53_A 186 GQ----VVFAKLKTLDLSSNKLAFMGPE-F--------------------------------------------QSAAGV 216 (317)
T ss_dssp CC----CCCTTCCEEECCSSCCCEECGG-G--------------------------------------------GGGTTC
T ss_pred cc----cccccCCEEECCCCcCCcchhh-h--------------------------------------------cccCcc
Confidence 22 2378999999999999875442 1 125789
Q ss_pred eEEEcccCccCccCcccccccCCCcEEECCCCcCC-CCCchhhhhccCCCEEECC-CCcccccCccc
Q 002167 761 ATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLT-GCIPSSLRNLTELESLDLS-SNKLAGRIPTQ 825 (957)
Q Consensus 761 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~-~~ip~~l~~L~~L~~L~Ls-~N~l~g~ip~~ 825 (957)
+.|+|++|++++ +|..++.+++|+.|+|++|.++ +.+|..++.+++|+.|+++ .+.+.|..|..
T Consensus 217 ~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 217 TWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp SEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 999999999984 7888999999999999999999 8899999999999999999 45677766654
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=241.11 Aligned_cols=229 Identities=28% Similarity=0.279 Sum_probs=168.2
Q ss_pred CCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCE
Q 002167 112 PRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRH 191 (957)
Q Consensus 112 ~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 191 (957)
+++++|+|++|.+.. ++...|..+++|++|+|++|.+.+..+..+.. +++|++|+|++|.++...+..|.++++|++
T Consensus 64 ~~l~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQI--IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCE--ECTTTTSSCSSCCEEECCSSCCCEECGGGGTT-CSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCe--eCHHHhhCCCCCCEEECCCCcCCccChhhccC-CccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 678888888888865 33333478888888888888887444445554 888888888888888666667888888888
Q ss_pred EEccCCcCCCCCchhhhhCCCCCcEEEccCCC-CCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcC
Q 002167 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNS-FSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSS 270 (957)
Q Consensus 192 L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~ 270 (957)
|++++|.+. .++...+.++++|++|++++|. +....+..|.++++|++|++++|+++ .+|. +.. +++|++|++++
T Consensus 141 L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~-l~~L~~L~Ls~ 216 (440)
T 3zyj_A 141 LWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP-LIKLDELDLSG 216 (440)
T ss_dssp EECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTT-CSSCCEEECTT
T ss_pred eeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCC-CcccCEEECCC
Confidence 888888877 4444333478888888888754 44333446778888888888888877 6663 333 77888888888
Q ss_pred CcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcc
Q 002167 271 NGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSG 347 (957)
Q Consensus 271 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 347 (957)
|.+++..|..|..+++|++|++++|.+.+..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 88877777778888888888888888877777777778888888888887776666666677777777777776653
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2.8e-23 Score=221.27 Aligned_cols=217 Identities=25% Similarity=0.335 Sum_probs=121.6
Q ss_pred CCCccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCcc
Q 002167 71 ADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNF 150 (957)
Q Consensus 71 ~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l 150 (957)
.++|.|.|+.|... +.++.+++++++++. +|. .+ .+++++|+|++|.+.+ ++...|..+++|++|++++|.+
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~--~~--~~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l 73 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPS--NI--PADTKKLDLQSNKLSS--LPSKAFHRLTKLRLLYLNDNKL 73 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCS--CC--CTTCSEEECCSSCCSC--CCTTSSSSCTTCCEEECCSSCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCC--CC--CCCCCEEECcCCCCCe--eCHHHhcCCCCCCEEECCCCcc
Confidence 47899999999653 445678888887763 443 22 2466777777776654 3433336666666666666666
Q ss_pred CccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCc
Q 002167 151 TGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPS 230 (957)
Q Consensus 151 ~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~ 230 (957)
+ .+|..++..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+. .+++|++|++++|.+++..+.
T Consensus 74 ~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 74 Q-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD-SLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp S-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTT
T ss_pred C-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC-cCcCCCEEECCCCcCCccCHh
Confidence 6 55554433366666666666666555445555556666666665555532222222 555555555555555544444
Q ss_pred ccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCc
Q 002167 231 SFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQ 310 (957)
Q Consensus 231 ~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 310 (957)
.|..+++|++|++++|+++ +..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 152 ~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLK-------------------------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK 206 (270)
T ss_dssp TTTTCTTCCEEECCSSCCS-------------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred HccCCcccceeEecCCcCc-------------------------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccC
Confidence 4455555555555555544 333334444555555555555555444444555555
Q ss_pred CceeeccCCcCC
Q 002167 311 LSFLGLAYNELI 322 (957)
Q Consensus 311 L~~L~L~~n~l~ 322 (957)
|+.|++++|.+.
T Consensus 207 L~~L~l~~N~~~ 218 (270)
T 2o6q_A 207 LKMLQLQENPWD 218 (270)
T ss_dssp CCEEECCSSCBC
T ss_pred CCEEEecCCCee
Confidence 555555555543
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.5e-26 Score=276.81 Aligned_cols=133 Identities=16% Similarity=0.108 Sum_probs=68.3
Q ss_pred CCCCCcEEEccCCCCCCCCCcccC-CCCcccEEeccCC-CCccccchhHhhhccCCcEEECcCCcCCccCccccc----C
Q 002167 210 NITQLAYLDLSSNSFSGHIPSSFS-NLQQLCYLDLDDN-HFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFS----N 283 (957)
Q Consensus 210 ~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n-~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~----~ 283 (957)
.+++|++|++++|.+++..+..+. .+++|++|++++| .++......+...+++|++|++++|.+++..+..+. .
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 455666666666655544444443 4566666666666 333222223333366777777776666544333332 4
Q ss_pred cCCCcEEEeccCc--Ccc-cCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCC
Q 002167 284 LQQLLWLNLEYNN--FVG-KIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSF 342 (957)
Q Consensus 284 l~~L~~L~L~~n~--l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 342 (957)
+++|++|++++|. +.. .++..+..+++|++|++++|...+.++..+..+++|++|+++.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSB
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccccc
Confidence 4566666666664 111 1111123346666666666632222445555566666666543
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=3.1e-23 Score=221.97 Aligned_cols=212 Identities=21% Similarity=0.202 Sum_probs=146.6
Q ss_pred cccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcc
Q 002167 593 TLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILR 672 (957)
Q Consensus 593 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~ 672 (957)
+|++|++++|.+++..+..|..+++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555665555555444555555666666666666555555555566666666666
Q ss_pred cccccccCCCCCCccCCCCceEEEcCCCcCcCC-CchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhH
Q 002167 673 SNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGV-LPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDL 751 (957)
Q Consensus 673 ~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~-ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (957)
+|.+.+..+.. ...+++|+.|++++|++++. +|..+
T Consensus 109 ~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~l~~~~----------------------------------------- 145 (276)
T 2z62_A 109 ETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYF----------------------------------------- 145 (276)
T ss_dssp TSCCCCSTTCC--CTTCTTCCEEECCSSCCCCCCCCGGG-----------------------------------------
T ss_pred CCCccccCchh--cccCCCCCEEECcCCccceecCchhh-----------------------------------------
Confidence 66554433322 24566777777777777652 45331
Q ss_pred HHHhhcccceEEEcccCccCccCcccccccCCCc----EEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCc
Q 002167 752 QMERILTTFATIDLSSNRFQRKIPEVVGKLNSLK----SLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLA 827 (957)
Q Consensus 752 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~ 827 (957)
..+++|+.|+|++|++++..+..+..+++|+ .|++++|++++..+..+.. .+|++|++++|++++..+..+.
T Consensus 146 ---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 146 ---SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp ---GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTT
T ss_pred ---ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhc
Confidence 1257888999999999988888888887777 8999999999776665554 4899999999999988777889
Q ss_pred CCCCCCeEECccCcccccCCCCCC
Q 002167 828 SLNYLSVLNLSNNQLEGPIPGGPQ 851 (957)
Q Consensus 828 ~l~~L~~L~ls~N~l~g~ip~~~~ 851 (957)
.+++|+.|++++|+++|.+|.-..
T Consensus 222 ~l~~L~~L~l~~N~~~c~c~~l~~ 245 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSCPRIDY 245 (276)
T ss_dssp TCCSCCEEECCSSCBCCCTTTTHH
T ss_pred ccccccEEEccCCcccccCCchHH
Confidence 999999999999999999986543
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=6.4e-24 Score=245.57 Aligned_cols=222 Identities=21% Similarity=0.185 Sum_probs=190.5
Q ss_pred CCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEE
Q 002167 567 NCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVL 645 (957)
Q Consensus 567 ~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 645 (957)
.+++|++|++++|.+++..|..+.. ++|++|+|++|.+++..| +..+++|+.|+|++|.+++.. ..++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 3458999999999999887878866 999999999999997766 899999999999999998643 33899999
Q ss_pred eCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCc
Q 002167 646 DVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSV 725 (957)
Q Consensus 646 ~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~ 725 (957)
++++|.+++..+. .+++|+.|++++|.+.+..+... ..+++|+.|++++|.+++.+|..+..
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~------------- 166 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAA------------- 166 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGG-------------
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhh-------------
Confidence 9999999987664 45889999999999988776554 56889999999999999987754311
Q ss_pred eecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhc
Q 002167 726 EVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNL 805 (957)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L 805 (957)
.+++|+.|+|++|.+++..+ +..+++|+.|+|++|++++..| .+..+
T Consensus 167 ------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l 213 (487)
T 3oja_A 167 ------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSA 213 (487)
T ss_dssp ------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGG
T ss_pred ------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCC
Confidence 25789999999999998733 4469999999999999998555 59999
Q ss_pred cCCCEEECCCCcccccCcccCcCCCCCCeEECccCccc-ccCC
Q 002167 806 TELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLE-GPIP 847 (957)
Q Consensus 806 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~-g~ip 847 (957)
++|+.|||++|++++ +|..+..+++|+.|++++|++. |.+|
T Consensus 214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 999999999999996 7888999999999999999998 4444
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=7.2e-22 Score=210.38 Aligned_cols=207 Identities=28% Similarity=0.316 Sum_probs=149.3
Q ss_pred CCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCC
Q 002167 571 LQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNN 650 (957)
Q Consensus 571 L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n 650 (957)
.+.++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCC-ccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 455666666655 3444332 45666777777666555556677777777777777776554455666777777777777
Q ss_pred ccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceeccc
Q 002167 651 QIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYM 730 (957)
Q Consensus 651 ~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~ 730 (957)
++++..+..+..+++|++|++++ |++++..|..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~--------------------------n~l~~~~~~~--------------------- 128 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDR--------------------------NQLKSLPPRV--------------------- 128 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCS--------------------------SCCCCCCTTT---------------------
T ss_pred cCCcCCHhHcccccCCCEEECCC--------------------------CccCeeCHHH---------------------
Confidence 76665555555555554444444 4444333211
Q ss_pred ccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCE
Q 002167 731 RLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELES 810 (957)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~ 810 (957)
+..+++|+.|+|++|++++..+..|+.+++|+.|+|++|++++..+..|..+++|++
T Consensus 129 -----------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 129 -----------------------FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp -----------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred -----------------------hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 011467888889999888877777899999999999999999988888999999999
Q ss_pred EECCCCcccccCcccCcCCCCCCeEECccCcccccCCCC
Q 002167 811 LDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG 849 (957)
Q Consensus 811 L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 849 (957)
|+|++|++++..+..+..+++|+.|++++|++.+.++..
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 224 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI 224 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence 999999999877778999999999999999999987643
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=3.5e-23 Score=225.41 Aligned_cols=205 Identities=21% Similarity=0.206 Sum_probs=129.7
Q ss_pred ccEEECCCCcCCCCCcccc--ccCCCccEEEccCCcCccCCC----ccccCCCCCcEEeCCCCccccCcccccccccccc
Q 002167 594 LQVLDMRMNNFSGSLPQTF--AKSCVLVSLNLNGNRLKGPLP----PSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQ 667 (957)
Q Consensus 594 L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~ 667 (957)
|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|++++|++.+..|..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4444444444444444443 444444444444444444332 2223444555555555555444444555555555
Q ss_pred EEEccccccccc--CCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEE
Q 002167 668 VLILRSNRFWGP--IGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLT 745 (957)
Q Consensus 668 ~L~L~~n~~~~~--~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (957)
+|++++|++.+. ++.......+++|++|++++|+++.. |...
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~----------------------------------- 216 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVC----------------------------------- 216 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHH-----------------------------------
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHH-----------------------------------
Confidence 555555554332 11111123466777788888877531 2110
Q ss_pred EechhHHHHhhcccceEEEcccCccCccCccccccc---CCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccC
Q 002167 746 MKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKL---NSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRI 822 (957)
Q Consensus 746 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~i 822 (957)
...+..+++|+.|||++|++++.+|+.++.+ ++|+.|+|++|+++ .+|..+. ++|++|||++|++++.
T Consensus 217 -----~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~- 287 (310)
T 4glp_A 217 -----AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA- 287 (310)
T ss_dssp -----HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-
T ss_pred -----HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-
Confidence 0012235789999999999999989888887 69999999999999 6788775 8999999999999974
Q ss_pred cccCcCCCCCCeEECccCcccc
Q 002167 823 PTQLASLNYLSVLNLSNNQLEG 844 (957)
Q Consensus 823 p~~l~~l~~L~~L~ls~N~l~g 844 (957)
|. +..+++|+.|++++|+++.
T Consensus 288 ~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 288 PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC-TTSCCCCSCEECSSTTTSC
T ss_pred ch-hhhCCCccEEECcCCCCCC
Confidence 43 6788999999999999874
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.9e-22 Score=215.12 Aligned_cols=203 Identities=22% Similarity=0.213 Sum_probs=129.4
Q ss_pred CCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEe
Q 002167 567 NCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLD 646 (957)
Q Consensus 567 ~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 646 (957)
.+++|+.|++++|.+. .++.....++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3444444444444443 222211124444444444444431 2445555666666666666555555555666666666
Q ss_pred CCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCce
Q 002167 647 VGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVE 726 (957)
Q Consensus 647 ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~ 726 (957)
+++|++++..+..+..+++|++|++++ |++++..|..+
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~--------------------------n~l~~~~~~~~---------------- 153 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAH--------------------------NQLQSLPKGVF---------------- 153 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCS--------------------------SCCCCCCTTTT----------------
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCC--------------------------CccCccCHHHh----------------
Confidence 666666555544444444444444444 43433222110
Q ss_pred ecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhcc
Q 002167 727 VGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLT 806 (957)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~ 806 (957)
..+++|+.|++++|++++..+..++.+++|+.|+|++|++++..|..++.++
T Consensus 154 ----------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 154 ----------------------------DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 205 (272)
T ss_dssp ----------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred ----------------------------ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCc
Confidence 1146678888888888887777888999999999999999998888899999
Q ss_pred CCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCCCC
Q 002167 807 ELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIPGG 849 (957)
Q Consensus 807 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 849 (957)
+|++|++++|++.+..| .|++++++.|+++|.||..
T Consensus 206 ~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 206 SLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCT
T ss_pred CCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCc
Confidence 99999999999987654 6888999999999999965
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=1.3e-21 Score=209.32 Aligned_cols=211 Identities=21% Similarity=0.171 Sum_probs=109.4
Q ss_pred CCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccccc-cccceeecccccccCcCCCcCCCCCCccEE
Q 002167 472 LPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCLGN-STLETLDLRMNNFQGSIPQTNAKGCKLTYL 550 (957)
Q Consensus 472 ~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 550 (957)
+++++++|++++|.+++..+..|..+++|++|++++|.+++..+..+.. .+|++|++++|++++..+..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 3456667777777776666666777777777777777766544433332 255555555555554444445555555555
Q ss_pred EccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCcc
Q 002167 551 RLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKG 630 (957)
Q Consensus 551 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 630 (957)
++++|++.+..+..+..+++|++|++++|.+++. .+|..+..+++|+.|++++|++++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----------------------KLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC----------------------CCCGGGGGCTTCCEEECCSSCCCE
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCcccee----------------------cCchhhccCCCCCEEECCCCCCCc
Confidence 5555555544444444555555555555554431 134444445555555555555544
Q ss_pred CCCccccCCCCCc----EEeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCC
Q 002167 631 PLPPSLVNCQYLE----VLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVL 706 (957)
Q Consensus 631 ~~p~~l~~l~~L~----~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~i 706 (957)
..+..+..+++|+ .|++++|++++..+..+.. .+|+.|++++|++.+..+... ..+++|+.|++++|++++..
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTT--TTCCSCCEEECCSSCBCCCT
T ss_pred CCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHh--cccccccEEEccCCcccccC
Confidence 4444444333333 4555555554433333322 245555555555443322221 34556666666666666655
Q ss_pred c
Q 002167 707 P 707 (957)
Q Consensus 707 p 707 (957)
|
T Consensus 241 ~ 241 (276)
T 2z62_A 241 P 241 (276)
T ss_dssp T
T ss_pred C
Confidence 4
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3e-21 Score=207.39 Aligned_cols=206 Identities=24% Similarity=0.268 Sum_probs=147.2
Q ss_pred ccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcE
Q 002167 565 LTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEV 644 (957)
Q Consensus 565 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 644 (957)
+.++++++++++++|.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|+|++|.+++..+ ...+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 455666777777777766 4454332 567777777777776666677777777777777777765432 256667777
Q ss_pred EeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCC
Q 002167 645 LDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNS 724 (957)
Q Consensus 645 L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~ 724 (957)
|++++|+++ .+|..+..+ ++|+.|++++|++++..|..+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l--------------------------~~L~~L~l~~N~l~~l~~~~~-------------- 120 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTL--------------------------PALTVLDVSFNRLTSLPLGAL-------------- 120 (290)
T ss_dssp EECCSSCCS-SCCCCTTTC--------------------------TTCCEEECCSSCCCCCCSSTT--------------
T ss_pred EECCCCcCC-cCchhhccC--------------------------CCCCEEECCCCcCcccCHHHH--------------
Confidence 777777665 334444444 444555555555554333211
Q ss_pred ceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhh
Q 002167 725 VEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRN 804 (957)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 804 (957)
..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..
T Consensus 121 ------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 170 (290)
T 1p9a_G 121 ------------------------------RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170 (290)
T ss_dssp ------------------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred ------------------------------cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcC
Confidence 12467888888888888877778889999999999999999777777889
Q ss_pred ccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccC
Q 002167 805 LTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPI 846 (957)
Q Consensus 805 L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 846 (957)
+++|++|+|++|+++ .+|..+..+..|+.+++++|++.+.+
T Consensus 171 l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 171 LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred cCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 999999999999998 68888888889999999999998765
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1.9e-21 Score=207.37 Aligned_cols=212 Identities=23% Similarity=0.316 Sum_probs=162.3
Q ss_pred CccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCC
Q 002167 107 SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL 186 (957)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 186 (957)
.+..+++|+.|++++|.+.. ++ .+ ..+++|++|++++|.+.+ ++ .+.. +++|++|++++|.+++..+..+.++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~--~~-~l-~~l~~L~~L~l~~n~l~~-~~-~l~~-l~~L~~L~L~~n~l~~~~~~~~~~l 108 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKS--VQ-GI-QYLPNVRYLALGGNKLHD-IS-ALKE-LTNLTYLILTGNQLQSLPNGVFDKL 108 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCC--CT-TG-GGCTTCCEEECTTSCCCC-CG-GGTT-CTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred ccccccceeeeeeCCCCccc--cc-cc-ccCCCCcEEECCCCCCCC-ch-hhcC-CCCCCEEECCCCccCccChhHhcCC
Confidence 45677888888888888754 22 34 778888888888888874 43 5665 8888888888888887777778888
Q ss_pred CCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEE
Q 002167 187 HQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYL 266 (957)
Q Consensus 187 ~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L 266 (957)
++|++|++++|.+.+..+..+. .+++|++|++++|.+++..+..++++++|++|++++|+++ .++......+++|++|
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDL 186 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEE
Confidence 8888888888888744444344 7888888888888888777777788888888888888887 4444443348888888
Q ss_pred ECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccC
Q 002167 267 DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLN 334 (957)
Q Consensus 267 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 334 (957)
++++|.+++..+..+..+++|++|++++|.+.+. +++|+.++++.|.++|.+|.+++.+..
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 8888888877777788888888888888877643 456788888888888888887766544
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=9e-23 Score=225.28 Aligned_cols=263 Identities=17% Similarity=0.180 Sum_probs=204.1
Q ss_pred CCCccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCC--CCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCC
Q 002167 71 ADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFL--PRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSC 148 (957)
Q Consensus 71 ~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l--~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n 148 (957)
.-|..|.++.|+. ..++.++++++.+.+. .+..+ +++++|++++|.+.+. +..+ ..+++|++|++++|
T Consensus 34 ~vc~~W~~~~~~~--~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~--~~~~-~~~~~L~~L~L~~~ 103 (336)
T 2ast_B 34 GVCKRWYRLASDE--SLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQP--LAEH-FSPFRVQHMDLSNS 103 (336)
T ss_dssp SSCHHHHHHHTCS--TTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECSC--CCSC-CCCBCCCEEECTTC
T ss_pred HHHHHHHHHhcCc--hhheeeccccccCCHH-----HHHhhhhccceEEEcCCcccccc--chhh-ccCCCCCEEEccCC
Confidence 3466899998863 4578899999877632 45556 8999999999998764 3335 57899999999999
Q ss_pred ccCcc-CchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCC-cCCCC-CchhhhhCCCCCcEEEccCC-CC
Q 002167 149 NFTGS-IPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSN-NFVGK-IPASLGNNITQLAYLDLSSN-SF 224 (957)
Q Consensus 149 ~l~~~-ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~~l~~L~~L~Ls~n-~l 224 (957)
.+.+. +|..+.. +++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+. ++++|++|++++| .+
T Consensus 104 ~l~~~~~~~~~~~-~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 104 VIEVSTLHGILSQ-CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDF 181 (336)
T ss_dssp EECHHHHHHHHTT-BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTC
T ss_pred CcCHHHHHHHHhh-CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCc
Confidence 98865 7766666 999999999999998888889999999999999999 67653 455455 8999999999999 88
Q ss_pred CCC-CCcccCCCC-cccEEeccCC--CCc-cccchhHhhhccCCcEEECcCCc-CCccCcccccCcCCCcEEEeccCc-C
Q 002167 225 SGH-IPSSFSNLQ-QLCYLDLDDN--HFV-GEIPASLGNNITQLAYLDLSSNG-FSGHIPSSFSNLQQLLWLNLEYNN-F 297 (957)
Q Consensus 225 ~~~-~p~~l~~l~-~L~~L~Ls~n--~l~-~~ip~~l~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~-l 297 (957)
++. ++..+..++ +|++|++++| .++ +.+|..+.. +++|++|++++|. +++..+..+..+++|++|++++|. +
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh-CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 754 566788889 9999999999 455 456665555 9999999999998 777777888999999999999985 3
Q ss_pred cccCCccccccCcCceeeccCCcCCCCCCcchhcc-cCCceEecCCCCCccccc
Q 002167 298 VGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFEL-LNLTEIYLSFSNFSGSVE 350 (957)
Q Consensus 298 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~~ 350 (957)
.......+..+++|++|++++| ++. ..+..+ ..++.|++++|.+++..+
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred CHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccC
Confidence 3222235778899999999988 332 233444 347777788888876544
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=6.6e-23 Score=228.44 Aligned_cols=260 Identities=17% Similarity=0.173 Sum_probs=139.3
Q ss_pred eecccccccCcCCCcCCCCCCccEEEccCCcCCCCCC----ccccCCC-CCCeEEcCCCccccccCccccC------Ccc
Q 002167 526 LDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLP----PSLTNCV-KLQFLDVGNNNLSGQIPECLGN------STL 594 (957)
Q Consensus 526 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~------~~L 594 (957)
+.++.|.+++.+|..+....+|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+.. ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555555555444444445555555555554444 4444454 4555555555554433332221 344
Q ss_pred cEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCC-CCCcEEeCCCCccccCccccccc-----cccccE
Q 002167 595 QVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNC-QYLEVLDVGNNQIDDTFPYWLDV-----LLELQV 668 (957)
Q Consensus 595 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~ls~n~l~~~~p~~l~~-----l~~L~~ 668 (957)
++|++++|.+++..+..+... +..+ ++|++|++++|++++..+..+.. .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 555555554444333322211 2222 44555555555544443333222 134555
Q ss_pred EEcccccccccCCCCC--CccCC-CCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEE
Q 002167 669 LILRSNRFWGPIGDTK--TRVPF-PKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLT 745 (957)
Q Consensus 669 L~L~~n~~~~~~~~~~--~~~~l-~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (957)
|++++|.+.+...... ....+ ++|+.|++++|++++..+..+...+.
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~------------------------------ 192 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA------------------------------ 192 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH------------------------------
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHH------------------------------
Confidence 5555554432111000 00112 26777777777777665543321111
Q ss_pred EechhHHHHhhc-ccceEEEcccCccCcc----Ccccccc-cCCCcEEECCCCcCCCCCchh----hhhccCCCEEECCC
Q 002167 746 MKGIDLQMERIL-TTFATIDLSSNRFQRK----IPEVVGK-LNSLKSLNISHNNLTGCIPSS----LRNLTELESLDLSS 815 (957)
Q Consensus 746 ~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~----ip~~l~~-l~~L~~L~Ls~N~l~~~ip~~----l~~L~~L~~L~Ls~ 815 (957)
.. ++|+.|||++|.+++. ++..+.. .++|+.|||++|.+++..+.. +..+++|++|+|++
T Consensus 193 ----------~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 193 ----------SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp ----------TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred ----------hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 12 4678888888888763 4455555 358888888888888765543 34567888888888
Q ss_pred CcccccC-------cccCcCCCCCCeEECccCccccc
Q 002167 816 NKLAGRI-------PTQLASLNYLSVLNLSNNQLEGP 845 (957)
Q Consensus 816 N~l~g~i-------p~~l~~l~~L~~L~ls~N~l~g~ 845 (957)
|++.+.. +..+..+++|++||+++|++.+.
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 8854433 34667788888888888888765
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=5.8e-23 Score=228.86 Aligned_cols=175 Identities=25% Similarity=0.247 Sum_probs=135.9
Q ss_pred EEEcccCcCccCCCcccccc-ccceeecccccccCcCC----CcCCCCC-CccEEEccCCcCCCCCCccccCC-----CC
Q 002167 502 YLDLSNNSLSGQIPQCLGNS-TLETLDLRMNNFQGSIP----QTNAKGC-KLTYLRLSGNHLEGPLPPSLTNC-----VK 570 (957)
Q Consensus 502 ~L~L~~n~l~~~~p~~~~~~-~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~ 570 (957)
.++++.|.+++.+|.....+ +|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46899999999999888777 59999999999998776 6777788 89999999999998888777775 99
Q ss_pred CCeEEcCCCccccccCcccc-----C-CcccEEECCCCcCCCCCccccc----c-CCCccEEEccCCcCccCCC----cc
Q 002167 571 LQFLDVGNNNLSGQIPECLG-----N-STLQVLDMRMNNFSGSLPQTFA----K-SCVLVSLNLNGNRLKGPLP----PS 635 (957)
Q Consensus 571 L~~L~Ls~n~l~~~~p~~~~-----~-~~L~~L~Ls~n~l~~~~p~~~~----~-l~~L~~L~Ls~n~l~~~~p----~~ 635 (957)
|++|++++|.+++..+..+. . ++|++|++++|.+++..+..+. . .++|++|+|++|.+++..+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999999876665332 2 6899999999999877665543 3 3589999999998886443 33
Q ss_pred ccCCC-CCcEEeCCCCccccCcccccccc-----ccccEEEcccccc
Q 002167 636 LVNCQ-YLEVLDVGNNQIDDTFPYWLDVL-----LELQVLILRSNRF 676 (957)
Q Consensus 636 l~~l~-~L~~L~ls~n~l~~~~p~~l~~l-----~~L~~L~L~~n~~ 676 (957)
+..++ +|++|++++|++++..+..+... ++|++|+|++|.+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 45555 88889999888887766554432 3555555555554
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=9.2e-21 Score=203.53 Aligned_cols=202 Identities=24% Similarity=0.298 Sum_probs=103.7
Q ss_pred cCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCC
Q 002167 135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQL 214 (957)
Q Consensus 135 ~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L 214 (957)
+++++++.++++++.++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++ ++.. . .+++|
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~-~l~~L 79 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-G-TLPVL 79 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-S-CCTTC
T ss_pred cccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-C-CCCcC
Confidence 34444444444444444 4444332 244455555555444444445555555555555554442 2221 1 44555
Q ss_pred cEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEecc
Q 002167 215 AYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEY 294 (957)
Q Consensus 215 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 294 (957)
++|++++|.++ .+|..+..+++|++|++++|+++ .+|...+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 55555555554 34444555555555555555555 33322222255555555555555544444455555666666666
Q ss_pred CcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCc
Q 002167 295 NNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFS 346 (957)
Q Consensus 295 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 346 (957)
|++++..+..+..+++|++|++++|+++ .+|..+....+|+.+++++|.+.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 6665444445555666666666666665 45555555666666666666654
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=7.7e-21 Score=200.01 Aligned_cols=121 Identities=24% Similarity=0.299 Sum_probs=88.0
Q ss_pred cccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEE
Q 002167 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 836 (957)
Q Consensus 757 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ 836 (957)
+++|+.|+|++|++++..+..++.+++|+.|+|++|++++..|..|+.+++|++|+|++|++++..|..+..+++|++|+
T Consensus 106 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 35667777777777776667778889999999999999988887899999999999999999988888899999999999
Q ss_pred CccCcccccCCCCCCCCccc------CCcccCCcCCCCCCCCCCCCCC
Q 002167 837 LSNNQLEGPIPGGPQFNTFG------NDSYSGNSGLCGFPLSKSCSID 878 (957)
Q Consensus 837 ls~N~l~g~ip~~~~~~~~~------~~~~~gn~~lcg~~~~~~c~~~ 878 (957)
+++|+++|..+....+..|. .....|+ .+|+.|....|..+
T Consensus 186 l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 186 LFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp CCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred eeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 99999998755432222221 0111233 35666666677653
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=2.2e-22 Score=222.09 Aligned_cols=250 Identities=18% Similarity=0.183 Sum_probs=167.3
Q ss_pred ccEEEccCCcCCCCCCccccCC--CCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCC-CccccccCCCccEEEc
Q 002167 547 LTYLRLSGNHLEGPLPPSLTNC--VKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGS-LPQTFAKSCVLVSLNL 623 (957)
Q Consensus 547 L~~L~Ls~n~l~~~~p~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L 623 (957)
++.+++++|.+. +..+..+ ++++.|++++|.+.+..+.....++|++|++++|.+++. ++..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 556666666554 3445555 666777777777666665554446677777777776654 5666667777777777
Q ss_pred cCCcCccCCCccccCCCCCcEEeCCCC-ccccC-ccccccccccccEEEcccc-ccccc-CCCCCCccCCC-CceEEEcC
Q 002167 624 NGNRLKGPLPPSLVNCQYLEVLDVGNN-QIDDT-FPYWLDVLLELQVLILRSN-RFWGP-IGDTKTRVPFP-KLRIMDCS 698 (957)
Q Consensus 624 s~n~l~~~~p~~l~~l~~L~~L~ls~n-~l~~~-~p~~l~~l~~L~~L~L~~n-~~~~~-~~~~~~~~~l~-~L~~Ldls 698 (957)
++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+.+. ++.. ...++ +|+.|+++
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA--VAHVSETITQLNLS 203 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH--HHHSCTTCCEEECC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH--HHhcccCCCEEEeC
Confidence 777776666666777777777777777 55542 5555667777777777777 55432 1111 13456 77777777
Q ss_pred CC--cCc-CCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCc-cCccC
Q 002167 699 HN--QLT-GVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNR-FQRKI 774 (957)
Q Consensus 699 ~N--~l~-g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~i 774 (957)
+| .++ +.+|.. ...+++|+.|++++|. +++..
T Consensus 204 ~~~~~~~~~~l~~~--------------------------------------------~~~~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 204 GYRKNLQKSDLSTL--------------------------------------------VRRCPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp SCGGGSCHHHHHHH--------------------------------------------HHHCTTCSEEECTTCTTCCGGG
T ss_pred CCcccCCHHHHHHH--------------------------------------------HhhCCCCCEEeCCCCCcCCHHH
Confidence 77 343 222211 2236789999999999 78888
Q ss_pred cccccccCCCcEEECCCCc-CCCCCchhhhhccCCCEEECCCCcccccCcccCcCC-CCCCeEECccCcccccCCCC
Q 002167 775 PEVVGKLNSLKSLNISHNN-LTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASL-NYLSVLNLSNNQLEGPIPGG 849 (957)
Q Consensus 775 p~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~ls~N~l~g~ip~~ 849 (957)
+..++.+++|+.|+|++|. ++......++++++|++|++++| ++. ..+..+ ..|..|++++|+++|..|..
T Consensus 240 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 240 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 8899999999999999995 33222236888999999999999 332 233334 24777789999999988854
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.6e-22 Score=227.75 Aligned_cols=196 Identities=20% Similarity=0.189 Sum_probs=125.4
Q ss_pred ccCCCccEEEccCCcCcc----CCCccccCCCCCcEEeCCCCccccCcccccc----cc---------ccccEEEccccc
Q 002167 613 AKSCVLVSLNLNGNRLKG----PLPPSLVNCQYLEVLDVGNNQIDDTFPYWLD----VL---------LELQVLILRSNR 675 (957)
Q Consensus 613 ~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~----~l---------~~L~~L~L~~n~ 675 (957)
..+++|++|+|++|.+++ .+|..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 455556666666665554 2444555566666666666665433332222 22 566666666666
Q ss_pred cc-ccCCCC-CCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHH
Q 002167 676 FW-GPIGDT-KTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQM 753 (957)
Q Consensus 676 ~~-~~~~~~-~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (957)
+. +.++.. .....+++|+.|++++|+++..--..... ..
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~---------------------------------------~~ 211 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL---------------------------------------EG 211 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH---------------------------------------TT
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHH---------------------------------------HH
Confidence 54 122110 01123556777777777765210000000 01
Q ss_pred HhhcccceEEEcccCccC----ccCcccccccCCCcEEECCCCcCCCC----Cchhhhh--ccCCCEEECCCCcccc---
Q 002167 754 ERILTTFATIDLSSNRFQ----RKIPEVVGKLNSLKSLNISHNNLTGC----IPSSLRN--LTELESLDLSSNKLAG--- 820 (957)
Q Consensus 754 ~~~l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~--L~~L~~L~Ls~N~l~g--- 820 (957)
...+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+.. +++|++|+|++|++++
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~ 291 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV 291 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence 112577888999999886 67888888899999999999999876 6666744 8899999999999988
Q ss_pred -cCcccC-cCCCCCCeEECccCcccccCC
Q 002167 821 -RIPTQL-ASLNYLSVLNLSNNQLEGPIP 847 (957)
Q Consensus 821 -~ip~~l-~~l~~L~~L~ls~N~l~g~ip 847 (957)
.+|..+ .++++|++|++++|++++..|
T Consensus 292 ~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 292 RTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 588777 668999999999999987764
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=3.8e-20 Score=201.35 Aligned_cols=225 Identities=17% Similarity=0.168 Sum_probs=158.0
Q ss_pred CCCCcEEECCCCccCccCch---hhhhcCCCCCEEEccCCcCCCCcchhc--cCCCCCCEEEccCCcCCCCCc----hhh
Q 002167 137 FPSLTLLDLCSCNFTGSIPP---SLGNNITQLAYLDLSINSFIGHIPSSF--SNLHQLRHLDLQSNNFVGKIP----ASL 207 (957)
Q Consensus 137 l~~L~~L~Ls~n~l~~~ip~---~l~~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~L~~n~l~~~~p----~~l 207 (957)
...++.+.+.++.+....-. .... +++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLA-YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHH-HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcc-cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34567777777766522111 1122 5678888888888888877777 788888888888888876544 233
Q ss_pred hhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccc--cchhH-hhhccCCcEEECcCCcCCccCcc----c
Q 002167 208 GNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGE--IPASL-GNNITQLAYLDLSSNGFSGHIPS----S 280 (957)
Q Consensus 208 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--ip~~l-~~~l~~L~~L~Ls~n~l~~~~p~----~ 280 (957)
. .+++|++|++++|.+++..|..++++++|++|++++|++.+. ++... ...+++|++|++++|.++. ++. .
T Consensus 142 ~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 219 (310)
T 4glp_A 142 W-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL 219 (310)
T ss_dssp T-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH
T ss_pred h-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH
Confidence 4 678888888888888877778888888888888888887643 22221 1237788888888888862 222 2
Q ss_pred ccCcCCCcEEEeccCcCcccCCcccccc---CcCceeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcC
Q 002167 281 FSNLQQLLWLNLEYNNFVGKIPDMFTNL---TQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKL 357 (957)
Q Consensus 281 l~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l 357 (957)
+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|.+++. + .+..+
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~--~~~~l 293 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P--QPDEL 293 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C--CTTSC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c--hhhhC
Confidence 4677888888888888887767666666 58888888888887 5666654 6788888888887743 1 14566
Q ss_pred CCCcEEEcccccc
Q 002167 358 KNLKVLSLSNISL 370 (957)
Q Consensus 358 ~~L~~L~L~~~~~ 370 (957)
++|+.|++++|.+
T Consensus 294 ~~L~~L~L~~N~l 306 (310)
T 4glp_A 294 PEVDNLTLDGNPF 306 (310)
T ss_dssp CCCSCEECSSTTT
T ss_pred CCccEEECcCCCC
Confidence 7777777777664
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=3.9e-20 Score=193.17 Aligned_cols=197 Identities=17% Similarity=0.150 Sum_probs=130.5
Q ss_pred CcccEEECCCCcCCCCCccccccCCCccEEEccCCc-CccCCCccccCCCCCcEEeCCC-CccccCccccccccccccEE
Q 002167 592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNR-LKGPLPPSLVNCQYLEVLDVGN-NQIDDTFPYWLDVLLELQVL 669 (957)
Q Consensus 592 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~ls~-n~l~~~~p~~l~~l~~L~~L 669 (957)
++|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 356667777776666555566777777777777775 6655555677777777777776 77776666667777777777
Q ss_pred EcccccccccCCCCCCccCCCCce---EEEcCCC-cCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEE
Q 002167 670 ILRSNRFWGPIGDTKTRVPFPKLR---IMDCSHN-QLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLT 745 (957)
Q Consensus 670 ~L~~n~~~~~~~~~~~~~~l~~L~---~Ldls~N-~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (957)
++++|++.+ +|. ...+++|+ .|++++| ++++..+..
T Consensus 111 ~l~~n~l~~-lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~~------------------------------------ 150 (239)
T 2xwt_C 111 GIFNTGLKM-FPD---LTKVYSTDIFFILEITDNPYMTSIPVNA------------------------------------ 150 (239)
T ss_dssp EEEEECCCS-CCC---CTTCCBCCSEEEEEEESCTTCCEECTTT------------------------------------
T ss_pred eCCCCCCcc-ccc---cccccccccccEEECCCCcchhhcCccc------------------------------------
Confidence 777777655 333 23344444 7777777 665433311
Q ss_pred EechhHHHHhhcccce-EEEcccCccCccCcccccccCCCcEEECCCCc-CCCCCchhhhhc-cCCCEEECCCCcccccC
Q 002167 746 MKGIDLQMERILTTFA-TIDLSSNRFQRKIPEVVGKLNSLKSLNISHNN-LTGCIPSSLRNL-TELESLDLSSNKLAGRI 822 (957)
Q Consensus 746 ~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~L-~~L~~L~Ls~N~l~g~i 822 (957)
+..++.|+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|+.+ ++|++||+++|++++ +
T Consensus 151 --------~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l 220 (239)
T 2xwt_C 151 --------FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-L 220 (239)
T ss_dssp --------TTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-C
T ss_pred --------ccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-C
Confidence 11246677 7888888887 444443333778888888884 776666778888 888888888888875 3
Q ss_pred cccCcCCCCCCeEECccC
Q 002167 823 PTQLASLNYLSVLNLSNN 840 (957)
Q Consensus 823 p~~l~~l~~L~~L~ls~N 840 (957)
|.. .+++|+.|+++++
T Consensus 221 ~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 221 PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCT--TCTTCSEEECTTC
T ss_pred Chh--HhccCceeeccCc
Confidence 433 5667778877765
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=2.8e-21 Score=217.51 Aligned_cols=238 Identities=21% Similarity=0.263 Sum_probs=104.0
Q ss_pred CccCCCCCCeeeCCCCCCCCCC---CCchhhcCCCCCcEEECCCC---ccCccCchhhh------hcCCCCCEEEccCCc
Q 002167 107 SLFFLPRLRKLNLAFNDFNGSK---ISSGFTDQFPSLTLLDLCSC---NFTGSIPPSLG------NNITQLAYLDLSINS 174 (957)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~~~~~~---i~~~~~~~l~~L~~L~Ls~n---~l~~~ip~~l~------~~l~~L~~L~Ls~n~ 174 (957)
.+..+++|++|+|++|.+++.. ++..+ ..+++|++|+|++| ++.+.+|..+. ..+++|++|+|++|.
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENI-ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTT-TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHH-HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 3445555666666665554321 01112 45555666666553 33334444331 125555555555555
Q ss_pred CCC----CcchhccCCCCCCEEEccCCcCCCCCchhhhh---CC---------CCCcEEEccCCCCC-CCCC---cccCC
Q 002167 175 FIG----HIPSSFSNLHQLRHLDLQSNNFVGKIPASLGN---NI---------TQLAYLDLSSNSFS-GHIP---SSFSN 234 (957)
Q Consensus 175 l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~---~l---------~~L~~L~Ls~n~l~-~~~p---~~l~~ 234 (957)
+.+ .+|..+.++++|++|+|++|.+.+..+..+.. .+ ++|++|++++|.++ +.+| ..+..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 554 24445555555555555555553222222221 11 45555555555544 1222 23334
Q ss_pred CCcccEEeccCCCCccc-----cchhHhhhccCCcEEECcCCcCC----ccCcccccCcCCCcEEEeccCcCccc----C
Q 002167 235 LQQLCYLDLDDNHFVGE-----IPASLGNNITQLAYLDLSSNGFS----GHIPSSFSNLQQLLWLNLEYNNFVGK----I 301 (957)
Q Consensus 235 l~~L~~L~Ls~n~l~~~-----ip~~l~~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~----~ 301 (957)
+++|++|++++|+++.. +|..+.. +++|++|++++|.++ ..+|..+..+++|++|+|++|.+.+. +
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhc-CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 44555555555544311 1112222 444555555555443 23344444444444444444444432 2
Q ss_pred Ccccc--ccCcCceeeccCCcCCC----CCCcch-hcccCCceEecCCCCCc
Q 002167 302 PDMFT--NLTQLSFLGLAYNELIG----SIPSSI-FELLNLTEIYLSFSNFS 346 (957)
Q Consensus 302 p~~l~--~l~~L~~L~L~~n~l~~----~~p~~l-~~l~~L~~L~L~~n~l~ 346 (957)
+..+. .+++|++|++++|.+++ .+|..+ .++++|++|++++|.++
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 23331 14444444444444443 233333 22344444444444443
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.2e-19 Score=196.94 Aligned_cols=195 Identities=23% Similarity=0.372 Sum_probs=131.4
Q ss_pred ccCCCCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcE
Q 002167 565 LTNCVKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEV 644 (957)
Q Consensus 565 l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 644 (957)
...+++|++|++++|.+. .+|.....++|++|++++|.+++..+ +..+++|++|++++|++++. ..+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCcc-CchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 345666777777777665 34432223666666666666664333 56666666666666666542 24555566666
Q ss_pred EeCCCCccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCC
Q 002167 645 LDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNS 724 (957)
Q Consensus 645 L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~ 724 (957)
|++++|++++..+ +. .+++|+.|++++|++++..+.
T Consensus 112 L~l~~n~l~~~~~--l~--------------------------~l~~L~~L~l~~n~l~~~~~l---------------- 147 (308)
T 1h6u_A 112 LDLTSTQITDVTP--LA--------------------------GLSNLQVLYLDLNQITNISPL---------------- 147 (308)
T ss_dssp EECTTSCCCCCGG--GT--------------------------TCTTCCEEECCSSCCCCCGGG----------------
T ss_pred EECCCCCCCCchh--hc--------------------------CCCCCCEEECCCCccCcCccc----------------
Confidence 6666665554321 33 345566666666666543320
Q ss_pred ceecccccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhh
Q 002167 725 VEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRN 804 (957)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~ 804 (957)
..+++|+.|++++|++++..+ ++.+++|+.|+|++|++++..+ +..
T Consensus 148 ------------------------------~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~ 193 (308)
T 1h6u_A 148 ------------------------------AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LAS 193 (308)
T ss_dssp ------------------------------GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGG
T ss_pred ------------------------------cCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcC
Confidence 114678888899888887544 8889999999999999987654 888
Q ss_pred ccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccc
Q 002167 805 LTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEG 844 (957)
Q Consensus 805 L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 844 (957)
+++|++|++++|++++..| +..+++|++|++++|++++
T Consensus 194 l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 9999999999999987654 7889999999999999986
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=4e-19 Score=186.87 Aligned_cols=175 Identities=23% Similarity=0.247 Sum_probs=92.1
Q ss_pred CCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCC
Q 002167 499 SIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGN 578 (957)
Q Consensus 499 ~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 578 (957)
..++++++++.++ .+|..+. ..++.|++++|++.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCcc-ccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 3455666666665 3443332 2555555555555555555555556666666666666655555555566666666666
Q ss_pred CccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcc
Q 002167 579 NNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP 657 (957)
Q Consensus 579 n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 657 (957)
|++++..+..+.. ++|++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 6555444444433 555555555555554444445555555555555555554444445555555555555555554444
Q ss_pred ccccccccccEEEccccc
Q 002167 658 YWLDVLLELQVLILRSNR 675 (957)
Q Consensus 658 ~~l~~l~~L~~L~L~~n~ 675 (957)
..+..+++|++|++++|+
T Consensus 173 ~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTTCTTCCEEECCSCC
T ss_pred HHHhCCCCCCEEEeeCCc
Confidence 444444444444444443
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=2.2e-19 Score=194.78 Aligned_cols=194 Identities=23% Similarity=0.361 Sum_probs=100.6
Q ss_pred ccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCC
Q 002167 108 LFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLH 187 (957)
Q Consensus 108 l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 187 (957)
...+++|++|++++|.+.. ++ .+ ..+++|++|++++|.+. .++. +.. +++|++|++++|.+.+. + .+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~-~~l~~L~~L~L~~n~i~-~~~~-~~~-l~~L~~L~L~~n~l~~~-~-~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GV-QYLNNLIGLELKDNQIT-DLAP-LKN-LTKITELELSGNPLKNV-S-AIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TG-GGCTTCCEEECCSSCCC-CCGG-GTT-CCSCCEEECCSCCCSCC-G-GGTTCT
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hh-hccCCCCEEEccCCcCC-CChh-Hcc-CCCCCEEEccCCcCCCc-h-hhcCCC
Confidence 3445666666666666543 23 23 55666666666666665 3444 443 66666666666665532 2 355566
Q ss_pred CCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEE
Q 002167 188 QLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLD 267 (957)
Q Consensus 188 ~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~ 267 (957)
+|++|++++|.+.+ ++. +. .+++|++|++++|.+++..+ ++.+++|++|++++|+++ .++. +.. +++|++|+
T Consensus 108 ~L~~L~l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~-l~~-l~~L~~L~ 179 (308)
T 1h6u_A 108 SIKTLDLTSTQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DLTP-LAN-LSKLTTLK 179 (308)
T ss_dssp TCCEEECTTSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEE
T ss_pred CCCEEECCCCCCCC-chh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC-CChh-hcC-CCCCCEEE
Confidence 66666666665553 332 33 55556666666555554322 555555555555555554 2332 222 55555555
Q ss_pred CcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCC
Q 002167 268 LSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELI 322 (957)
Q Consensus 268 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 322 (957)
+++|.+++..+ +..+++|++|++++|.+.+.. .+..+++|++|++++|.++
T Consensus 180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 55555543222 445555555555555554332 1444555555555555443
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=2.6e-19 Score=186.83 Aligned_cols=183 Identities=20% Similarity=0.259 Sum_probs=102.1
Q ss_pred CCCCCCCccEEEeccCCccCCCCccccCCCCCCEEEcccCc-CccCCCccccc-cccceeeccc-ccccCcCCCcCCCCC
Q 002167 469 LPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNS-LSGQIPQCLGN-STLETLDLRM-NNFQGSIPQTNAKGC 545 (957)
Q Consensus 469 ~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~-~~L~~L~L~~-n~l~~~~~~~~~~l~ 545 (957)
+|..+++++.|++++|.+++..+..|..+++|++|++++|. +++..+..+.. .+|++|++++ |++++..+..+..++
T Consensus 26 ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~ 105 (239)
T 2xwt_C 26 IPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP 105 (239)
T ss_dssp CCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred cCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence 34455677788888888777666677778888888888886 66444434432 3666666665 566555555555556
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCC---eEEcCCC-ccccccCccccC-Cccc-EEECCCCcCCCCCccccccCCCcc
Q 002167 546 KLTYLRLSGNHLEGPLPPSLTNCVKLQ---FLDVGNN-NLSGQIPECLGN-STLQ-VLDMRMNNFSGSLPQTFAKSCVLV 619 (957)
Q Consensus 546 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~---~L~Ls~n-~l~~~~p~~~~~-~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~ 619 (957)
+|++|++++|++++ +|. +..+++|+ +|++++| .+++..+..+.. ++|+ +|++++|+++...+..|.. ++|+
T Consensus 106 ~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~ 182 (239)
T 2xwt_C 106 LLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLD 182 (239)
T ss_dssp TCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEE
T ss_pred CCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCC
Confidence 66666666666554 333 55555555 5555555 555433333333 5555 5555555555222222222 4555
Q ss_pred EEEccCCc-CccCCCccccCC-CCCcEEeCCCCcccc
Q 002167 620 SLNLNGNR-LKGPLPPSLVNC-QYLEVLDVGNNQIDD 654 (957)
Q Consensus 620 ~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~ls~n~l~~ 654 (957)
.|++++|+ +++..+..|.++ ++|+.|++++|++++
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 55555553 544434445555 555555555555543
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=5.9e-20 Score=213.68 Aligned_cols=209 Identities=22% Similarity=0.340 Sum_probs=143.1
Q ss_pred ccCCCCCCCCCc-----cccce-EecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcC
Q 002167 63 KMMSWKEDADCC-----SWDGV-TCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQ 136 (957)
Q Consensus 63 ~l~~W~~~~~~c-----~w~gv-~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~ 136 (957)
.+.+|..+.++| .|.|+ .|.. ++++.|+|+++++.+ +|. .+ +++|++|+|++|.++. +| ..
T Consensus 32 ~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip----~~ 98 (571)
T 3cvr_A 32 AWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP----EL 98 (571)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC----CC
T ss_pred HHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc----cc
Confidence 355776666777 79999 6863 578899999998886 665 33 3778888888888863 55 23
Q ss_pred CCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcE
Q 002167 137 FPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAY 216 (957)
Q Consensus 137 l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~ 216 (957)
+++|++|++++|.+++ +|. +.. +|++|+|++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~---~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~ 164 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA---SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEV 164 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT---TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCE
T ss_pred cCCCCEEEccCCCCCC-cch-hhc---CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCE
Confidence 6788888888888874 776 432 78888888888776 554 57778888888887774 564 4577788
Q ss_pred EEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCC-------cEEECcCCcCCccCcccccCcCCCcE
Q 002167 217 LDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQL-------AYLDLSSNGFSGHIPSSFSNLQQLLW 289 (957)
Q Consensus 217 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~~ 289 (957)
|++++|.+++ +|. |. ++|++|++++|+++ .+|. +.. +| +.|++++|.++ .+|..+..+++|++
T Consensus 165 L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 165 LSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234 (571)
T ss_dssp EECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEE
T ss_pred EECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCE
Confidence 8888887775 555 54 77777777777776 6665 322 44 66666666666 45555555666666
Q ss_pred EEeccCcCcccCCcccccc
Q 002167 290 LNLEYNNFVGKIPDMFTNL 308 (957)
Q Consensus 290 L~L~~n~l~~~~p~~l~~l 308 (957)
|++++|.+++.+|..+..+
T Consensus 235 L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 235 IILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp EECCSSSCCHHHHHHHHHH
T ss_pred EEeeCCcCCCcCHHHHHHh
Confidence 6666666665555554443
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=3e-19 Score=207.69 Aligned_cols=188 Identities=28% Similarity=0.381 Sum_probs=139.6
Q ss_pred CCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCC
Q 002167 570 KLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGN 649 (957)
Q Consensus 570 ~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~ 649 (957)
+|+.|++++|.+++ +|..+. ++|+.|++++|.++ .+| ..+++|+.|+|++|++++ +|. +.+ +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~-~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP-PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC-TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhHc-CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 89999999999986 776553 68999999999988 566 457889999999999987 666 655 889999999
Q ss_pred CccccCccccccccccccEEEcccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecc
Q 002167 650 NQIDDTFPYWLDVLLELQVLILRSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGY 729 (957)
Q Consensus 650 n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~ 729 (957)
|++++ +|. .+++|+.|++++|.+.+ +|. .+++|+.|++++|++++ +|. +
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~L~~-lp~-l------------------- 178 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE-----LPTSLEVLSVRNNQLTF-LPE-L------------------- 178 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCC-C-------------------
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC-----cCCCcCEEECCCCCCCC-cch-h-------------------
Confidence 98887 554 57888888888888765 443 35678888888888776 442 1
Q ss_pred cccCCCCCccceEEEEEechhHHHHhhcccceEEEcccCccCccCcccccccCCC-------cEEECCCCcCCCCCchhh
Q 002167 730 MRLPGSSNYYESIFLTMKGIDLQMERILTTFATIDLSSNRFQRKIPEVVGKLNSL-------KSLNISHNNLTGCIPSSL 802 (957)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L-------~~L~Ls~N~l~~~ip~~l 802 (957)
.++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+++ .+|..+
T Consensus 179 ---------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l 226 (571)
T 3cvr_A 179 ---------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI 226 (571)
T ss_dssp ---------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred ---------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence 145677788888877 5565 554 66 77888888777 467777
Q ss_pred hhccCCCEEECCCCcccccCcccCcCCC
Q 002167 803 RNLTELESLDLSSNKLAGRIPTQLASLN 830 (957)
Q Consensus 803 ~~L~~L~~L~Ls~N~l~g~ip~~l~~l~ 830 (957)
..+++|++|+|++|++++.+|..+..++
T Consensus 227 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 227 LSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp GGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 7778888888888888777777766543
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=5.7e-19 Score=179.99 Aligned_cols=183 Identities=29% Similarity=0.399 Sum_probs=115.4
Q ss_pred ccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCcc
Q 002167 74 CSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGS 153 (957)
Q Consensus 74 c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 153 (957)
|.|.+|.|... ++. .+|. ...++|++|++++|.+.+ ++...|..+++|++|++++|+++ .
T Consensus 7 C~~~~v~c~~~------------~l~-~~p~----~~~~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~-~ 66 (208)
T 2o6s_A 7 CSGTTVECYSQ------------GRT-SVPT----GIPAQTTYLDLETNSLKS--LPNGVFDELTSLTQLYLGGNKLQ-S 66 (208)
T ss_dssp EETTEEECCSS------------CCS-SCCS----CCCTTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCC-C
T ss_pred ECCCEEEecCC------------Ccc-CCCC----CCCCCCcEEEcCCCccCc--CChhhhcccccCcEEECCCCccC-c
Confidence 78999999653 111 2222 224577788888887764 45544477777777777777777 5
Q ss_pred CchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccC
Q 002167 154 IPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFS 233 (957)
Q Consensus 154 ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~ 233 (957)
+|...+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+ ++...+.++++|++|++++|.+++..+..+.
T Consensus 67 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 145 (208)
T 2o6s_A 67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCCcCCEEECCCCccceeCHHHhc
Confidence 555443337777777777777776655556777777777777777763 3333323667777777777777655555566
Q ss_pred CCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcC
Q 002167 234 NLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQ 285 (957)
Q Consensus 234 ~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 285 (957)
++++|++|++++|.+.+. +++|++|+++.|.++|.+|..++.++
T Consensus 146 ~l~~L~~L~l~~N~~~~~--------~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 146 RLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TCTTCCEEECCSCCBCCC--------TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred cCCCccEEEecCCCeecC--------CCCHHHHHHHHHhCCceeeccCcccc
Confidence 666677777666665532 34555666666666666665555444
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=3.7e-19 Score=197.00 Aligned_cols=244 Identities=22% Similarity=0.216 Sum_probs=169.8
Q ss_pred ccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCcc
Q 002167 74 CSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGS 153 (957)
Q Consensus 74 c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ 153 (957)
|.|..|.|.. ++++ .+|. .+ .+++++|+|++|.++. +|+..|.++++|++|+|++|.+.+.
T Consensus 9 C~~~~v~C~~------------~~Lt-~iP~--~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~ 69 (350)
T 4ay9_X 9 CSNRVFLCQE------------SKVT-EIPS--DL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEV 69 (350)
T ss_dssp EETTEEEEES------------TTCC-SCCT--TC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCE
T ss_pred eeCCEEEecC------------CCCC-ccCc--Cc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCc
Confidence 6677777753 2333 3444 23 3678999999999864 7776668899999999999998777
Q ss_pred CchhhhhcCCCCCE-EEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccC-CCCCCCCCcc
Q 002167 154 IPPSLGNNITQLAY-LDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSS-NSFSGHIPSS 231 (957)
Q Consensus 154 ip~~l~~~l~~L~~-L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~-n~l~~~~p~~ 231 (957)
+|...+.+++++++ +.+++|+++...|..|.++++|++|++++|.+....+..+. ...++..|++.+ +.+....+..
T Consensus 70 i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~~i~~l~~~~ 148 (350)
T 4ay9_X 70 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI-HSLQKVLLDIQDNINIHTIERNS 148 (350)
T ss_dssp ECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC-CBSSCEEEEEESCTTCCEECTTS
T ss_pred cChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhc-ccchhhhhhhccccccccccccc
Confidence 88766555887765 66677888877788889999999999999988743333333 667788888865 4566555556
Q ss_pred cCCCC-cccEEeccCCCCccccchhHhhhccCCcEEECcC-CcCCccCcccccCcCCCcEEEeccCcCcccCCccccccC
Q 002167 232 FSNLQ-QLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSS-NGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLT 309 (957)
Q Consensus 232 l~~l~-~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 309 (957)
|..+. .+++|++++|+++ .+|..++. ..+|++|++++ |.++...+..|..+++|++|++++|+++...+..+.+++
T Consensus 149 f~~~~~~l~~L~L~~N~i~-~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~ 226 (350)
T 4ay9_X 149 FVGLSFESVILWLNKNGIQ-EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226 (350)
T ss_dssp STTSBSSCEEEECCSSCCC-EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCC
T ss_pred hhhcchhhhhhcccccccc-CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccch
Confidence 66664 6888889988887 77777766 67888888875 455533334678888888888888888865554454444
Q ss_pred cCceeeccCCcCCCCCCcchhcccCCceEecCCC
Q 002167 310 QLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFS 343 (957)
Q Consensus 310 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 343 (957)
.|.+.++.-...+|. +..+++|+.+++.++
T Consensus 227 ---~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 227 ---KLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp ---EEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred ---HhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 444433332335553 666777777776543
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=3.6e-18 Score=189.00 Aligned_cols=243 Identities=17% Similarity=0.108 Sum_probs=128.7
Q ss_pred ceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCcc-ccC-Cccc-EEECC
Q 002167 524 ETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPEC-LGN-STLQ-VLDMR 600 (957)
Q Consensus 524 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~-~~L~-~L~Ls 600 (957)
++++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+|.. +.. ++++ .+.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 44555555555 344433 245666666666666444445666666666666666655444432 222 3332 23444
Q ss_pred CCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEcccccccccC
Q 002167 601 MNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLILRSNRFWGPI 680 (957)
Q Consensus 601 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 680 (957)
.|++++..|..|..+++|++|++++|+++ ...+..+....++..|++.++.....+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~------------------------~~~~~~~~~~~~l~~l~l~~~~~i~~l 144 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIK------------------------HLPDVHKIHSLQKVLLDIQDNINIHTI 144 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCS------------------------SCCCCTTCCBSSCEEEEEESCTTCCEE
T ss_pred CCcccccCchhhhhccccccccccccccc------------------------cCCchhhcccchhhhhhhccccccccc
Confidence 44555444444555555555555555554 433333334444444444443222222
Q ss_pred CCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhHHHHhhcccc
Q 002167 681 GDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDLQMERILTTF 760 (957)
Q Consensus 681 ~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 760 (957)
+..........++.|++++|+++...+ ..+ ....+
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~-~~f--------------------------------------------~~~~L 179 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHN-SAF--------------------------------------------NGTQL 179 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECT-TSS--------------------------------------------TTEEE
T ss_pred cccchhhcchhhhhhccccccccCCCh-hhc--------------------------------------------cccch
Confidence 222111112346677777777764222 110 02456
Q ss_pred eEEEcccCccCccCc-ccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECcc
Q 002167 761 ATIDLSSNRFQRKIP-EVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSN 839 (957)
Q Consensus 761 ~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~ 839 (957)
+.|++++|+..+.+| ..|+.+++|+.|||++|+++...+.. +.+|+.|.+.+++--..+| .+.++++|+.+++++
T Consensus 180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 777887543334444 46788888888888888888554433 3445555555555445666 377788888888876
Q ss_pred Ccc
Q 002167 840 NQL 842 (957)
Q Consensus 840 N~l 842 (957)
+.-
T Consensus 256 ~~~ 258 (350)
T 4ay9_X 256 PSH 258 (350)
T ss_dssp HHH
T ss_pred Ccc
Confidence 543
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=4.9e-18 Score=173.00 Aligned_cols=161 Identities=28% Similarity=0.370 Sum_probs=78.3
Q ss_pred CCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEec
Q 002167 164 QLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDL 243 (957)
Q Consensus 164 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 243 (957)
+|++|++++|.+++..+..+.++++|++|++++|++. .+|...+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4444444444444433334444444455555444444 223222224455555555555554444444455555555555
Q ss_pred cCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCC
Q 002167 244 DDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIG 323 (957)
Q Consensus 244 s~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 323 (957)
++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|+++|
T Consensus 108 ~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred CCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 555554 2333222225555555555555554444445555555555555554432 23455666666666666
Q ss_pred CCCcchhccc
Q 002167 324 SIPSSIFELL 333 (957)
Q Consensus 324 ~~p~~l~~l~ 333 (957)
.+|..++.++
T Consensus 180 ~ip~~~~~l~ 189 (208)
T 2o6s_A 180 VVRNSAGSVA 189 (208)
T ss_dssp TBBCTTSSBC
T ss_pred eeeccCcccc
Confidence 6665555443
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=2.5e-17 Score=170.16 Aligned_cols=168 Identities=24% Similarity=0.287 Sum_probs=125.9
Q ss_pred ccCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcE
Q 002167 63 KMMSWKEDADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTL 142 (957)
Q Consensus 63 ~l~~W~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~ 142 (957)
....|..+...|+|.+|.|... ++ +.+|. .+ .++|++|+|++|.+.+. .+..+ ..+++|++
T Consensus 8 ~~~~~~~~~~~Cs~~~v~c~~~------------~l-~~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~-~~l~~L~~ 68 (229)
T 3e6j_A 8 HHSAACPSQCSCSGTTVDCRSK------------RH-ASVPA--GI--PTNAQILYLHDNQITKL-EPGVF-DSLINLKE 68 (229)
T ss_dssp ---CCCCTTCEEETTEEECTTS------------CC-SSCCS--CC--CTTCSEEECCSSCCCCC-CTTTT-TTCTTCCE
T ss_pred hhhccCCCCCEEeCCEeEccCC------------Cc-CccCC--CC--CCCCCEEEcCCCccCcc-CHHHh-hCccCCcE
Confidence 4455666778999999999643 11 23443 22 37888999999888763 34444 88888999
Q ss_pred EECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCC
Q 002167 143 LDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSN 222 (957)
Q Consensus 143 L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n 222 (957)
|+|++|++. .+|...+..+++|++|+|++|.+++..+..|..+++|++|++++|++. .+|..+. .+++|++|++++|
T Consensus 69 L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N 145 (229)
T 3e6j_A 69 LYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQN 145 (229)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSS
T ss_pred EECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCC
Confidence 999988886 676655444888888888888888777777888888888888888887 7787776 7888888888888
Q ss_pred CCCCCCCcccCCCCcccEEeccCCCCcccc
Q 002167 223 SFSGHIPSSFSNLQQLCYLDLDDNHFVGEI 252 (957)
Q Consensus 223 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i 252 (957)
.+++..+..+..+++|++|++++|.+.+..
T Consensus 146 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 146 QLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 888766677888888888888888877544
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=4.5e-19 Score=214.38 Aligned_cols=233 Identities=19% Similarity=0.224 Sum_probs=134.2
Q ss_pred CCHHHHHHHHHhhccCcCCCCCCchhhhhhcccCCccCCCCC-CCCCccccceEecCCCCcEEEEEcCCCCCccccCCCC
Q 002167 28 CSHDQSSALLQFKQLFSFQKHSSLSCEIFQQISRPKMMSWKE-DADCCSWDGVTCDSATGHVIGLDLSCSWLHGNIPSNS 106 (957)
Q Consensus 28 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~l~~W~~-~~~~c~w~gv~c~~~~~~v~~l~L~~~~l~g~~~~~~ 106 (957)
..+.++++|+++......... ..-..|.. .+..+.|.++.+.. ++++.++|.++++... +.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~-- 190 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKT-------------AKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQ-- 190 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-------------TC--------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccC-------------cccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hh--
Confidence 456788999999888644322 13346644 34567899988864 6899999998887653 22
Q ss_pred CccCCCCCCeeeCCCCCCCCC-------CCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCc
Q 002167 107 SLFFLPRLRKLNLAFNDFNGS-------KISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHI 179 (957)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~~~~~-------~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~ 179 (957)
.+ ++.++|+.+.+.+. .++...|..+++|+.|+|++|.+. .+|..++. +++|++|+|++|.++ .+
T Consensus 191 ~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~l 262 (727)
T 4b8c_D 191 AL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-EL 262 (727)
T ss_dssp ------------------------------------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CC
T ss_pred hH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-cc
Confidence 22 33344444433321 133444588999999999999998 89998887 999999999999998 88
Q ss_pred chhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhh
Q 002167 180 PSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNN 259 (957)
Q Consensus 180 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~ 259 (957)
|..|+++++|++|+|++|.++ .+|..++ ++++|++|+|++|.++ .+|..|+++++|++|+|++|.+++.+|..+...
T Consensus 263 p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 263 PAEIKNLSNLRVLDLSHNRLT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp CGGGGGGTTCCEEECTTSCCS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred ChhhhCCCCCCEEeCcCCcCC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 888999999999999999998 8898887 8999999999999997 678889999999999999999998888777642
Q ss_pred ccCCcEEECcCCcCCccCcccccCcCCCcEEEeccC
Q 002167 260 ITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYN 295 (957)
Q Consensus 260 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n 295 (957)
-..+..+++++|.+++.+|.. |+.|+++.|
T Consensus 340 ~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 340 SVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred chhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 222334778888888877754 445556555
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=4.8e-18 Score=174.36 Aligned_cols=93 Identities=27% Similarity=0.293 Sum_probs=85.4
Q ss_pred cccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEE
Q 002167 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 836 (957)
Q Consensus 757 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ 836 (957)
+++|+.|+|++|++++..|..|+.+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+..+++|++|+
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 46778888888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCcccccCCCC
Q 002167 837 LSNNQLEGPIPGG 849 (957)
Q Consensus 837 ls~N~l~g~ip~~ 849 (957)
+++|+++|.++-.
T Consensus 160 L~~N~l~c~c~l~ 172 (220)
T 2v70_A 160 LLANPFNCNCYLA 172 (220)
T ss_dssp CCSCCEECSGGGH
T ss_pred ecCcCCcCCCchH
Confidence 9999999988743
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=4.2e-17 Score=167.27 Aligned_cols=90 Identities=19% Similarity=0.236 Sum_probs=73.6
Q ss_pred ccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEEC
Q 002167 758 TTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNL 837 (957)
Q Consensus 758 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l 837 (957)
++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|++
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 44556666666666555556777888889999999998888888999999999999999999888888899999999999
Q ss_pred ccCcccccCC
Q 002167 838 SNNQLEGPIP 847 (957)
Q Consensus 838 s~N~l~g~ip 847 (957)
++|++.+.++
T Consensus 160 ~~N~~~c~c~ 169 (220)
T 2v9t_B 160 AQNPFICDCH 169 (220)
T ss_dssp CSSCEECSGG
T ss_pred CCCCcCCCCc
Confidence 9999988665
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=8.9e-17 Score=172.61 Aligned_cols=172 Identities=28% Similarity=0.393 Sum_probs=94.4
Q ss_pred ccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCC
Q 002167 108 LFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLH 187 (957)
Q Consensus 108 l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 187 (957)
+..+++|++|++++|.+.. ++ .+ ..+++|++|++++|.++ .++. +.. +++|++|++++|.+.+ +| .+..++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~--~~-~~-~~l~~L~~L~L~~n~l~-~~~~-l~~-l~~L~~L~l~~n~l~~-~~-~l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS--VQ-GI-QYLPNVTKLFLNGNKLT-DIKP-LAN-LKNLGWLFLDENKVKD-LS-SLKDLK 112 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TG-GGCTTCCEEECCSSCCC-CCGG-GTT-CTTCCEEECCSSCCCC-GG-GGTTCT
T ss_pred hhhcCcccEEEccCCCccc--Ch-hH-hcCCCCCEEEccCCccC-CCcc-ccc-CCCCCEEECCCCcCCC-Ch-hhccCC
Confidence 3455666666666666643 22 23 55666666666666665 3443 443 6666666666666554 22 256666
Q ss_pred CCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEE
Q 002167 188 QLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLD 267 (957)
Q Consensus 188 ~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~ 267 (957)
+|++|++++|.+.+ + ..+. .+++|++|++++|.+++. ..++.+++|++|++++|++++ ++. +.. +++|++|+
T Consensus 113 ~L~~L~L~~n~i~~-~-~~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~-l~~-l~~L~~L~ 184 (291)
T 1h6t_A 113 KLKSLSLEHNGISD-I-NGLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP-LAG-LTKLQNLY 184 (291)
T ss_dssp TCCEEECTTSCCCC-C-GGGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG-GTT-CTTCCEEE
T ss_pred CCCEEECCCCcCCC-C-hhhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh-hcC-CCccCEEE
Confidence 66666666666553 2 2333 556666666666666543 345555666666666665553 222 332 55555555
Q ss_pred CcCCcCCccCcccccCcCCCcEEEeccCcCc
Q 002167 268 LSSNGFSGHIPSSFSNLQQLLWLNLEYNNFV 298 (957)
Q Consensus 268 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 298 (957)
+++|.+++ ++ .+..+++|+.|++++|.+.
T Consensus 185 L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 185 LSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred CCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 55555553 22 2555555555555555544
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.71 E-value=6.2e-17 Score=173.80 Aligned_cols=189 Identities=25% Similarity=0.308 Sum_probs=138.3
Q ss_pred CCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEE
Q 002167 114 LRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLD 193 (957)
Q Consensus 114 L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 193 (957)
+..+++..+.+.+. ... ..+++|++|++++|.+. .++. +.. +++|++|++++|.+++..+ +.++++|++|+
T Consensus 26 ~~~~~l~~~~~~~~---~~~-~~l~~L~~L~l~~~~i~-~~~~-~~~-l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~ 96 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA---VTQ-NELNSIDQIIANNSDIK-SVQG-IQY-LPNVTKLFLNGNKLTDIKP--LANLKNLGWLF 96 (291)
T ss_dssp HHHHHTTCSCTTSE---ECH-HHHHTCCEEECTTSCCC-CCTT-GGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred HHHHHhcCCCcccc---cch-hhcCcccEEEccCCCcc-cChh-Hhc-CCCCCEEEccCCccCCCcc--cccCCCCCEEE
Confidence 34445555555432 122 56788889999988887 5553 555 8889999999888886544 88888888888
Q ss_pred ccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcC
Q 002167 194 LQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGF 273 (957)
Q Consensus 194 L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l 273 (957)
+++|.+.+ ++ .+. .+++|++|++++|.+++. ..+..+++|++|++++|++++ + ..+.. +++|++|++++|.+
T Consensus 97 l~~n~l~~-~~-~l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~-l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 97 LDENKVKD-LS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSR-LTKLDTLSLEDNQI 168 (291)
T ss_dssp CCSSCCCC-GG-GGT-TCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGGG-CTTCSEEECCSSCC
T ss_pred CCCCcCCC-Ch-hhc-cCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhcc-CCCCCEEEccCCcc
Confidence 88888874 44 354 788888888888888754 457788888888888888873 4 34444 88888888888888
Q ss_pred CccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCC
Q 002167 274 SGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIG 323 (957)
Q Consensus 274 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 323 (957)
++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|.++.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 76544 77888888888888888753 3 37778888888888887664
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=3.6e-16 Score=184.09 Aligned_cols=176 Identities=28% Similarity=0.389 Sum_probs=129.8
Q ss_pred CccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCC
Q 002167 107 SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL 186 (957)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 186 (957)
.+..+++|+.|++++|.+.. ++ .+ ..+++|+.|+|++|.+. .+|. +.. +++|++|+|++|.+.+ +| .+..+
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~--l~-~l-~~l~~L~~L~Ls~N~l~-~~~~-l~~-l~~L~~L~Ls~N~l~~-l~-~l~~l 108 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKS--VQ-GI-QYLPNVTKLFLNGNKLT-DIKP-LTN-LKNLGWLFLDENKIKD-LS-SLKDL 108 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCC--CT-TG-GGCTTCCEEECTTSCCC-CCGG-GGG-CTTCCEEECCSSCCCC-CT-TSTTC
T ss_pred chhcCCCCCEEECcCCCCCC--Ch-HH-ccCCCCCEEEeeCCCCC-CChh-hcc-CCCCCEEECcCCCCCC-Ch-hhccC
Confidence 35677888888888888765 33 34 77888888888888887 4554 555 8888888888888775 33 57888
Q ss_pred CCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEE
Q 002167 187 HQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYL 266 (957)
Q Consensus 187 ~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L 266 (957)
++|++|+|++|.+.+ ++ .+. .+++|+.|+|++|.+++. ..++.+++|+.|+|++|++.+..| +.. +++|+.|
T Consensus 109 ~~L~~L~Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~-l~~L~~L 180 (605)
T 1m9s_A 109 KKLKSLSLEHNGISD-IN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG-LTKLQNL 180 (605)
T ss_dssp TTCCEEECTTSCCCC-CG-GGG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT-CTTCCEE
T ss_pred CCCCEEEecCCCCCC-Cc-ccc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc-CCCCCEE
Confidence 888888888888874 33 454 788888888888888765 567788888888888888875444 443 7888888
Q ss_pred ECcCCcCCccCcccccCcCCCcEEEeccCcCcccC
Q 002167 267 DLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKI 301 (957)
Q Consensus 267 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 301 (957)
+|++|.+++. ..+..+++|+.|+|++|.+.+..
T Consensus 181 ~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 181 YLSKNHISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred ECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 8888887753 35777778888888877776543
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=3.1e-16 Score=160.79 Aligned_cols=152 Identities=22% Similarity=0.282 Sum_probs=73.9
Q ss_pred EEEcCCCCCccccCCCCCccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEE
Q 002167 90 GLDLSCSWLHGNIPSNSSLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLD 169 (957)
Q Consensus 90 ~l~L~~~~l~g~~~~~~~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~ 169 (957)
.++++++.+.. +|. .+ .+.+++|+|++|.+++. .+..+|..+++|++|+|++|.+++..+..+.. +++|++|+
T Consensus 15 ~l~~s~n~l~~-iP~--~~--~~~~~~L~L~~N~l~~~-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-l~~L~~L~ 87 (220)
T 2v70_A 15 TVDCSNQKLNK-IPE--HI--PQYTAELRLNNNEFTVL-EATGIFKKLPQLRKINFSNNKITDIEEGAFEG-ASGVNEIL 87 (220)
T ss_dssp EEECCSSCCSS-CCS--CC--CTTCSEEECCSSCCCEE-CCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEE
T ss_pred EeEeCCCCccc-Ccc--CC--CCCCCEEEcCCCcCCcc-CchhhhccCCCCCEEECCCCcCCEECHHHhCC-CCCCCEEE
Confidence 34555555542 333 11 23345566665555442 12222355555555555555555322223333 55555555
Q ss_pred ccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCc
Q 002167 170 LSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFV 249 (957)
Q Consensus 170 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 249 (957)
|++|.+++..+..|.++++|++|+|++|.+.+..|..+. .+++|++|+|++|.+++..|..|..+++|++|++++|.+.
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 555555554444455555555555555555543343333 4555555555555555444455555555555555555444
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=2e-16 Score=186.24 Aligned_cols=192 Identities=24% Similarity=0.311 Sum_probs=130.1
Q ss_pred CCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCE
Q 002167 112 PRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRH 191 (957)
Q Consensus 112 ~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 191 (957)
..+..++++.+.+.+. . .+ ..+++|+.|++++|.+. .+| .+.. +++|++|+|++|.+.+..| +..+++|++
T Consensus 21 ~~l~~l~l~~~~i~~~--~-~~-~~L~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 91 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDA--V-TQ-NELNSIDQIIANNSDIK-SVQ-GIQY-LPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91 (605)
T ss_dssp HHHHHHHTTCSCTTSE--E-CH-HHHTTCCCCBCTTCCCC-CCT-TGGG-CTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred HHHHHHhccCCCcccc--c-ch-hcCCCCCEEECcCCCCC-CCh-HHcc-CCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence 3445556666655432 1 12 56777888888888876 555 4555 7888888888888776544 777888888
Q ss_pred EEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCC
Q 002167 192 LDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSN 271 (957)
Q Consensus 192 L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n 271 (957)
|+|++|.+.+ +| .+. .+++|++|+|++|.+++. ..+..+++|+.|+|++|++++ + ..+.. +++|+.|+|++|
T Consensus 92 L~Ls~N~l~~-l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~-l~~L~~L~Ls~N 163 (605)
T 1m9s_A 92 LFLDENKIKD-LS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSR-LTKLDTLSLEDN 163 (605)
T ss_dssp EECCSSCCCC-CT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCC-C-GGGGS-CTTCSEEECCSS
T ss_pred EECcCCCCCC-Ch-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCC-c-hhhcc-cCCCCEEECcCC
Confidence 8888887763 33 444 677788888887777753 347777777777777777763 3 34443 777777777777
Q ss_pred cCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCC
Q 002167 272 GFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGS 324 (957)
Q Consensus 272 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 324 (957)
.+.+..| +..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+.+.
T Consensus 164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 164 QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 7775544 67777777777777777653 3466777777777777776643
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=5.1e-16 Score=160.31 Aligned_cols=153 Identities=27% Similarity=0.312 Sum_probs=112.4
Q ss_pred CcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEc
Q 002167 140 LTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDL 219 (957)
Q Consensus 140 L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~L 219 (957)
-+.++++++.+. .+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|++. .+|...+..+++|++|+|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEEC
Confidence 456777777776 7776553 57888888888888777777888888888888888876 555554447788888888
Q ss_pred cCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcc
Q 002167 220 SSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVG 299 (957)
Q Consensus 220 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 299 (957)
++|.+++..+..|..+++|++|++++|+++ .+|..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 888887666666777888888888888877 77777655 7777777777777775555566677777777777776653
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.68 E-value=3.7e-16 Score=160.21 Aligned_cols=150 Identities=21% Similarity=0.225 Sum_probs=68.6
Q ss_pred CEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCc
Q 002167 501 QYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNN 580 (957)
Q Consensus 501 ~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 580 (957)
+.++++++.++ .+|..+. .+++.|++++|++++..+..+..+++|++|+|++|++++..|..|.++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L--------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL--------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC---------
T ss_pred CEEEcCCCCcC-cCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC---------
Confidence 45666666655 3443322 244444444444444433344444444444444444444444444444444
Q ss_pred cccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccc
Q 002167 581 LSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWL 660 (957)
Q Consensus 581 l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l 660 (957)
++|+|++|++++..+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+..+
T Consensus 83 --------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 83 --------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp --------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred --------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 444444444443333334444444445555444444444444444555555555555444444444
Q ss_pred cccccccEEEccccc
Q 002167 661 DVLLELQVLILRSNR 675 (957)
Q Consensus 661 ~~l~~L~~L~L~~n~ 675 (957)
..+++|++|++++|+
T Consensus 149 ~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hCCCCCCEEEeCCCC
Confidence 444444444444443
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=1.9e-16 Score=175.88 Aligned_cols=174 Identities=24% Similarity=0.225 Sum_probs=123.7
Q ss_pred CEEEcccCcCccCCCccccccccceeecccccccCcCCCcCC-CCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCC
Q 002167 501 QYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNA-KGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNN 579 (957)
Q Consensus 501 ~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 579 (957)
+.++++++.++ .+|..+. ..++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 46777777766 3554432 2567777777777766666666 7788888888888888777777888888888888888
Q ss_pred ccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccc---cCCCCCcEEeCCCCccccC
Q 002167 580 NLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSL---VNCQYLEVLDVGNNQIDDT 655 (957)
Q Consensus 580 ~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~ls~n~l~~~ 655 (957)
++++..+..+.. ++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..| ..+++|+.|++++|+++..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 887666655554 778888888888887777778888888888888888875443444 5678888888888888876
Q ss_pred ccccccccccc--cEEEcccccc
Q 002167 656 FPYWLDVLLEL--QVLILRSNRF 676 (957)
Q Consensus 656 ~p~~l~~l~~L--~~L~L~~n~~ 676 (957)
.+..+..++.+ +.|+|++|++
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCE
T ss_pred CHHHhhhccHhhcceEEecCCCc
Confidence 66666666653 5566655554
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=1.6e-16 Score=176.51 Aligned_cols=128 Identities=24% Similarity=0.247 Sum_probs=61.5
Q ss_pred CeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhh-cCCCCCEEEccCCcCCCCcchhccCCCCCCEEE
Q 002167 115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGN-NITQLAYLDLSINSFIGHIPSSFSNLHQLRHLD 193 (957)
Q Consensus 115 ~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 193 (957)
++++++++.+.. +|..+ .+.+++|+|++|+++ .++...+. .+++|++|+|++|.+++..+..|.++++|++|+
T Consensus 21 ~~l~c~~~~l~~--iP~~~---~~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPN--VPQSL---PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCSS--CCSSC---CTTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCc--cCccC---CCCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 355555555543 44433 234555555555555 23322221 255555555555555544444455555555555
Q ss_pred ccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCc
Q 002167 194 LQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFV 249 (957)
Q Consensus 194 L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 249 (957)
|++|++.+ ++...+..+++|++|+|++|.+++..|..|.++++|++|+|++|+++
T Consensus 95 Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 95 LSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCc-CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 55555542 22222224555555555555555444444555555555555555444
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=6.7e-17 Score=161.97 Aligned_cols=113 Identities=22% Similarity=0.399 Sum_probs=96.8
Q ss_pred cccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEE
Q 002167 757 LTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLN 836 (957)
Q Consensus 757 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ 836 (957)
+++|+.|+|++|++++.+|..|+.+++|+.|+|++|++++..|..|+++++|++|+|++|++++.+|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCcccccCCCCCCCCcc-cCCcccCCcCCCCCC
Q 002167 837 LSNNQLEGPIPGGPQFNTF-GNDSYSGNSGLCGFP 870 (957)
Q Consensus 837 ls~N~l~g~ip~~~~~~~~-~~~~~~gn~~lcg~~ 870 (957)
+++|+++|.+|..+ +..| ....+.++...|+.|
T Consensus 133 L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCC
Confidence 99999999987432 2111 222344555556554
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=2.6e-16 Score=166.21 Aligned_cols=169 Identities=20% Similarity=0.272 Sum_probs=117.6
Q ss_pred CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCccccccccccccEEEc
Q 002167 592 STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLELQVLIL 671 (957)
Q Consensus 592 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~L 671 (957)
..+..+++++|.+++.. .+..+++|+.|++++|.++. +| .+..+++|++|++++|++++..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 45666677777776433 46677778888888887763 44 57777788888888887776544 556666665555
Q ss_pred ccccccccCCCCCCccCCCCceEEEcCCCcCcCCCchHHHhhhhccccCCCCCceecccccCCCCCccceEEEEEechhH
Q 002167 672 RSNRFWGPIGDTKTRVPFPKLRIMDCSHNQLTGVLPLWYLESFKAMMHGNNNSVEVGYMRLPGSSNYYESIFLTMKGIDL 751 (957)
Q Consensus 672 ~~n~~~~~~~~~~~~~~l~~L~~Ldls~N~l~g~ip~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (957)
++|++.+.. ...
T Consensus 93 ~~N~l~~l~-~~~------------------------------------------------------------------- 104 (263)
T 1xeu_A 93 NRNRLKNLN-GIP------------------------------------------------------------------- 104 (263)
T ss_dssp CSSCCSCCT-TCC-------------------------------------------------------------------
T ss_pred CCCccCCcC-ccc-------------------------------------------------------------------
Confidence 555543211 000
Q ss_pred HHHhhcccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCC
Q 002167 752 QMERILTTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNY 831 (957)
Q Consensus 752 ~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~ 831 (957)
...|+.|+|++|++++. +.++.+++|+.|+|++|++++. | .++.+++|++|++++|++++. ..+..+++
T Consensus 105 -----~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~ 173 (263)
T 1xeu_A 105 -----SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKK 173 (263)
T ss_dssp -----CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCC
T ss_pred -----cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCC
Confidence 03456677777777653 3477788888888888888875 3 588888888888888888876 66788888
Q ss_pred CCeEECccCccccc
Q 002167 832 LSVLNLSNNQLEGP 845 (957)
Q Consensus 832 L~~L~ls~N~l~g~ 845 (957)
|+.|++++|++++.
T Consensus 174 L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 174 VNWIDLTGQKCVNE 187 (263)
T ss_dssp CCEEEEEEEEEECC
T ss_pred CCEEeCCCCcccCC
Confidence 88888888888865
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=9.1e-17 Score=169.67 Aligned_cols=171 Identities=22% Similarity=0.330 Sum_probs=116.8
Q ss_pred CCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCC
Q 002167 110 FLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQL 189 (957)
Q Consensus 110 ~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 189 (957)
.++.++.++++.+.+++ ++ .+ ..+++|++|++++|.+. .+| .+.. +++|++|+|++|.+++..+ +.++++|
T Consensus 17 ~l~~l~~l~l~~~~i~~--~~-~~-~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~L~~N~i~~~~~--l~~l~~L 87 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD--LV-SQ-KELSGVQNFNGDNSNIQ-SLA-GMQF-FTNLKELHLSHNQISDLSP--LKDLTKL 87 (263)
T ss_dssp HHHHHHHHHHTCSCTTS--EE-CH-HHHTTCSEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCSSC
T ss_pred HHHHHHHHHhcCCCccc--cc-ch-hhcCcCcEEECcCCCcc-cch-HHhh-CCCCCEEECCCCccCCChh--hccCCCC
Confidence 34556666777776654 22 23 66777788888877776 566 5555 7778888888877775544 7777778
Q ss_pred CEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECc
Q 002167 190 RHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS 269 (957)
Q Consensus 190 ~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls 269 (957)
++|++++|++++ +|.. . . ++|++|++++|.+++. ..++++++|++|++++|+++ .++ .+.. +++|++|+++
T Consensus 88 ~~L~L~~N~l~~-l~~~-~-~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~-~~~-~l~~-l~~L~~L~L~ 158 (263)
T 1xeu_A 88 EELSVNRNRLKN-LNGI-P-S-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIV-MLGF-LSKLEVLDLH 158 (263)
T ss_dssp CEEECCSSCCSC-CTTC-C-C-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC-BCG-GGGG-CTTCCEEECT
T ss_pred CEEECCCCccCC-cCcc-c-c-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC-CCh-HHcc-CCCCCEEECC
Confidence 888888777763 4432 2 2 7777777777777753 34777777777777777776 344 3444 7777777777
Q ss_pred CCcCCccCcccccCcCCCcEEEeccCcCccc
Q 002167 270 SNGFSGHIPSSFSNLQQLLWLNLEYNNFVGK 300 (957)
Q Consensus 270 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 300 (957)
+|.+++. ..+..+++|++|++++|.+.+.
T Consensus 159 ~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 159 GNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 7777755 5577777777777777777644
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=2.9e-18 Score=200.79 Aligned_cols=182 Identities=18% Similarity=0.195 Sum_probs=118.3
Q ss_pred cCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCc-------------CCCCcchhccCCCCCCEEE-ccCCcCC
Q 002167 135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINS-------------FIGHIPSSFSNLHQLRHLD-LQSNNFV 200 (957)
Q Consensus 135 ~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~ 200 (957)
..+++|+.|+|++|++. .+|..++. +++|+.|++++|. ..+..|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45777778888888776 77888877 7888888876664 4566677777778888777 5554332
Q ss_pred CCCchh------hhh-CCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcC
Q 002167 201 GKIPAS------LGN-NITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGF 273 (957)
Q Consensus 201 ~~~p~~------l~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l 273 (957)
.++.. +.. ....|++|++++|.+++ +|. ++++++|++|++++|+++ .+|..+.. +++|+.|+|++|.+
T Consensus 424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNAL 498 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG-CTTCCEEECCSSCC
T ss_pred -hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc-CCCCCEEECCCCCC
Confidence 11110 000 11246777777777764 454 666777777777777776 66666655 67777777777776
Q ss_pred CccCcccccCcCCCcEEEeccCcCcccC-CccccccCcCceeeccCCcCCCCC
Q 002167 274 SGHIPSSFSNLQQLLWLNLEYNNFVGKI-PDMFTNLTQLSFLGLAYNELIGSI 325 (957)
Q Consensus 274 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~ 325 (957)
++ +| .++.+++|++|++++|.+++.. |..++.+++|+.|++++|.+++..
T Consensus 499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 64 45 5666667777777777666654 666666666666666666666443
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=2.9e-16 Score=158.22 Aligned_cols=152 Identities=16% Similarity=0.275 Sum_probs=85.1
Q ss_pred CCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEE
Q 002167 162 ITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYL 241 (957)
Q Consensus 162 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 241 (957)
+++|++|++++|.+. .+| .+..+++|++|++++|.+. . +..+. .+++|++|++++|.+++..|..++++++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhh-cCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 445555555555554 333 3555555555555555443 1 22333 55666666666666655555556666666666
Q ss_pred eccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcC
Q 002167 242 DLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNEL 321 (957)
Q Consensus 242 ~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 321 (957)
++++|++++..|..+.. +++|++|++++|...+.+| .+..+++|++|++++|.+.+. + .+..+++|++|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINT-LPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTT-CSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhh-CCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 66666666555555544 6666666666665222333 466666666666666666542 2 456666666666666665
Q ss_pred C
Q 002167 322 I 322 (957)
Q Consensus 322 ~ 322 (957)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 3
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=9.1e-16 Score=154.56 Aligned_cols=154 Identities=19% Similarity=0.272 Sum_probs=94.9
Q ss_pred cCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCC
Q 002167 135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQL 214 (957)
Q Consensus 135 ~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L 214 (957)
..+++|++|++++|.+. .+| .+.. +++|++|++++|.+.. +..+..+++|++|++++|.+++..+..+. .+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEY-AHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLS-GLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGG-CTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCT-TCTTC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhc-CCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhc-CCCCC
Confidence 44566677777776666 555 4554 6677777777665432 23566667777777777766655555555 66677
Q ss_pred cEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEecc
Q 002167 215 AYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEY 294 (957)
Q Consensus 215 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 294 (957)
++|++++|.+++..|..++++++|++|++++|...+.+| .+.. +++|++|++++|.+++ ++ .+..+++|++|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~-l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKT-LPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGG-CSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcC-CCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence 777777776666556666666777777777766223555 3433 6667777777776664 22 566666677777766
Q ss_pred CcCc
Q 002167 295 NNFV 298 (957)
Q Consensus 295 n~l~ 298 (957)
|++.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 6654
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=1.9e-18 Score=202.36 Aligned_cols=215 Identities=20% Similarity=0.186 Sum_probs=140.9
Q ss_pred CccccccccccccccCCCcChhhhcCCCCCEEECcCCcCCCCCChhhhhhccCcceEEECCCcccCCCCCCCCCccceee
Q 002167 380 SSFPNLSALDLSACNISEFPDNLRTQHQLELLDLSENQIGGRIPSWMWDIGVHTLIELDLSRNFLTSIDHLPWKNLEYLH 459 (957)
Q Consensus 380 ~~l~~L~~L~L~~~~l~~lp~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~ 459 (957)
...++|+.|++++|.++.+|..++.+++|+.|++++|......|..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l---------------------------------- 391 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL---------------------------------- 391 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH----------------------------------
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHH----------------------------------
Confidence 4567788888888888888888888888888887655321011100
Q ss_pred ccCccCCCCCCCCCCCccEEEeccCCccCCCCccccCCCCCCEEE-cccCcCccCCCccccccccceeecccccccCcCC
Q 002167 460 LDSNSLQGSLPDLPPHMVSFSISNNSLTGEIPSSFCNLSSIQYLD-LSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIP 538 (957)
Q Consensus 460 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~-L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~ 538 (957)
+..+...+..|..+..+++|+.|+ ++.|.+. .|+.+.+.+|.++...+
T Consensus 392 ---------------------l~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~----------~L~~l~l~~n~i~~l~~ 440 (567)
T 1dce_A 392 ---------------------MRALDPLLYEKETLQYFSTLKAVDPMRAAYLD----------DLRSKFLLENSVLKMEY 440 (567)
T ss_dssp ---------------------HHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred ---------------------HHhcccccCCHHHHHHHHhcccCcchhhcccc----------hhhhhhhhcccccccCc
Confidence 011122344566666777777777 5555432 56666667776654322
Q ss_pred CcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCC
Q 002167 539 QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCV 617 (957)
Q Consensus 539 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~ 617 (957)
..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++. ++|+.|+|++|.+++ +| .++.+++
T Consensus 441 ------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~ 509 (567)
T 1dce_A 441 ------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPR 509 (567)
T ss_dssp ------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSS
T ss_pred ------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCC
Confidence 247778888888775 454 777788888888888777 66666655 777777777777775 45 6777777
Q ss_pred ccEEEccCCcCccCC-CccccCCCCCcEEeCCCCccccCcccc---ccccccccEEE
Q 002167 618 LVSLNLNGNRLKGPL-PPSLVNCQYLEVLDVGNNQIDDTFPYW---LDVLLELQVLI 670 (957)
Q Consensus 618 L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~ls~n~l~~~~p~~---l~~l~~L~~L~ 670 (957)
|+.|+|++|++++.. |..+..+++|+.|++++|++++..|.. +..+++|++|+
T Consensus 510 L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 777777777777665 777777777777777777777664432 22356666654
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=2.9e-16 Score=189.78 Aligned_cols=142 Identities=24% Similarity=0.253 Sum_probs=84.7
Q ss_pred cCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCcccccc
Q 002167 536 SIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAK 614 (957)
Q Consensus 536 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~ 614 (957)
..+..+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++. ++|++|+|++|.|+ .+|..|+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34555666667777777777766 45555566777777777777766 56665544 66677777777666 55666666
Q ss_pred CCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCccccCcccccccccc-ccEEEcccccccccCC
Q 002167 615 SCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFPYWLDVLLE-LQVLILRSNRFWGPIG 681 (957)
Q Consensus 615 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~-L~~L~L~~n~~~~~~~ 681 (957)
+++|++|+|++|.++ .+|..|.++++|+.|+|++|++++.+|..+..+.. +..+++++|.+.+.+|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 666777777666665 55666666666666666666666666665554321 1224455555544443
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=1.2e-14 Score=145.44 Aligned_cols=113 Identities=26% Similarity=0.333 Sum_probs=81.8
Q ss_pred CCcEEECCCCccCccCchh-hhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167 139 SLTLLDLCSCNFTGSIPPS-LGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL 217 (957)
Q Consensus 139 ~L~~L~Ls~n~l~~~ip~~-l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L 217 (957)
+|++|++++|.+.+..+.. +.. +++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..+. ++++|++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGR-LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL-GLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGG-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSST-TCTTCCEE
T ss_pred CCCEEECCCCcCCccCCcccccc-CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhc-CCCCCCEE
Confidence 6677777777776333332 444 77777777777777777777777777777777777777755444454 77888888
Q ss_pred EccCCCCCCCCCcccCCCCcccEEeccCCCCccccc
Q 002167 218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIP 253 (957)
Q Consensus 218 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip 253 (957)
+|++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 888888887777788888888888888888876655
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=2.6e-14 Score=139.82 Aligned_cols=134 Identities=24% Similarity=0.300 Sum_probs=100.3
Q ss_pred CCCCCcEEECCCCccC-ccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCC
Q 002167 136 QFPSLTLLDLCSCNFT-GSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQL 214 (957)
Q Consensus 136 ~l~~L~~L~Ls~n~l~-~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L 214 (957)
..++|++|++++|.+. +.+|..+.. +++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+. ++++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTTC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh-hCCCC
Confidence 3467888888888887 677777665 88888888888887765 6678888888888888888866666654 68888
Q ss_pred cEEEccCCCCCCCC-CcccCCCCcccEEeccCCCCccccch---hHhhhccCCcEEECcCCcCC
Q 002167 215 AYLDLSSNSFSGHI-PSSFSNLQQLCYLDLDDNHFVGEIPA---SLGNNITQLAYLDLSSNGFS 274 (957)
Q Consensus 215 ~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~ip~---~l~~~l~~L~~L~Ls~n~l~ 274 (957)
++|++++|.+++.. +..+..+++|++|++++|.++ .+|. .....+++|++|++++|.+.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888888887542 266778888888888888887 4443 23333777777777777765
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=3.5e-14 Score=135.80 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=90.6
Q ss_pred CCCCcEEECCCCccC-ccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCc
Q 002167 137 FPSLTLLDLCSCNFT-GSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLA 215 (957)
Q Consensus 137 l~~L~~L~Ls~n~l~-~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~ 215 (957)
.++|++|++++|.+. +.+|..+.. +++|++|++++|.+++. ..++++++|++|++++|.+++.+|..+. .+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCC
Confidence 456777777777776 667766665 77888888888877755 5677788888888888887765666554 678888
Q ss_pred EEEccCCCCCCC-CCcccCCCCcccEEeccCCCCccccch---hHhhhccCCcEEECc
Q 002167 216 YLDLSSNSFSGH-IPSSFSNLQQLCYLDLDDNHFVGEIPA---SLGNNITQLAYLDLS 269 (957)
Q Consensus 216 ~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~ip~---~l~~~l~~L~~L~Ls 269 (957)
+|++++|.+++. .+..++.+++|++|++++|.+++ +|. .....+++|++|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCC
Confidence 888888887753 23667777788888888887773 333 233337777777765
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=6.4e-14 Score=137.03 Aligned_cols=132 Identities=23% Similarity=0.269 Sum_probs=77.0
Q ss_pred CCCCEEEccCCcCC-CCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcE
Q 002167 187 HQLRHLDLQSNNFV-GKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAY 265 (957)
Q Consensus 187 ~~L~~L~L~~n~l~-~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~ 265 (957)
++|++|++++|.+. +.+|..+. .+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+.. +++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCCE
Confidence 44555555555544 34444433 455555555555555543 45566666666666666666445554443 667777
Q ss_pred EECcCCcCCccC-cccccCcCCCcEEEeccCcCcccCC---ccccccCcCceeeccCCcCC
Q 002167 266 LDLSSNGFSGHI-PSSFSNLQQLLWLNLEYNNFVGKIP---DMFTNLTQLSFLGLAYNELI 322 (957)
Q Consensus 266 L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~ 322 (957)
|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 777777666431 2556666677777777776665433 35666666777776666654
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=2.8e-14 Score=136.45 Aligned_cols=126 Identities=25% Similarity=0.259 Sum_probs=87.2
Q ss_pred CCccEEEccCCcCC-CCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEE
Q 002167 545 CKLTYLRLSGNHLE-GPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLN 622 (957)
Q Consensus 545 ~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 622 (957)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..++. ++|++|++++|.+++.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666666 55666666677777777777776644 33333 6777777777777766777777777788888
Q ss_pred ccCCcCccC-CCccccCCCCCcEEeCCCCccccCcc---ccccccccccEEEcc
Q 002167 623 LNGNRLKGP-LPPSLVNCQYLEVLDVGNNQIDDTFP---YWLDVLLELQVLILR 672 (957)
Q Consensus 623 Ls~n~l~~~-~p~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~L~ 672 (957)
+++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888777753 33667777888888888888777655 467777777777765
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=3.9e-14 Score=155.11 Aligned_cols=194 Identities=14% Similarity=0.117 Sum_probs=91.2
Q ss_pred CCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCC----CCCCCCcccCCCCc
Q 002167 162 ITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNS----FSGHIPSSFSNLQQ 237 (957)
Q Consensus 162 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~----l~~~~p~~l~~l~~ 237 (957)
+++|+.|+|.+ .++..-+.+|.+|++|+.+++++|.+. .++...+..+.++.++....+. ........|.++..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 56666666665 555444455666666666666666555 3444444355555555444321 11112223333444
Q ss_pred cc-EEeccCCCCccccchhHh---------------------------hhccCCcEEECcCCcCCccCcccccCcCCCcE
Q 002167 238 LC-YLDLDDNHFVGEIPASLG---------------------------NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLW 289 (957)
Q Consensus 238 L~-~L~Ls~n~l~~~ip~~l~---------------------------~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 289 (957)
|+ .+.+... +.++..++ ..+++|+.+++++|.++...+.+|.++++|++
T Consensus 178 L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 178 LETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp CEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred cceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 44 2332221 12222222 12455555555555555444445555555555
Q ss_pred EEeccCcCcccCCccccccCcCc-eeeccCCcCCCCCCcchhcccCCceEecCCCCCcccccchhhhcCCCCcEE
Q 002167 290 LNLEYNNFVGKIPDMFTNLTQLS-FLGLAYNELIGSIPSSIFELLNLTEIYLSFSNFSGSVELYDFAKLKNLKVL 363 (957)
Q Consensus 290 L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L 363 (957)
+++.+| +....+.+|.++.+|+ .+++.. .++...+.+|.++++|+.++++.|.+. .++...|.++++|+.+
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLI 326 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEE
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhh
Confidence 555554 4444445555555555 555554 333333344555555555555555444 3333444445555444
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=4.4e-13 Score=134.02 Aligned_cols=109 Identities=30% Similarity=0.357 Sum_probs=73.2
Q ss_pred CCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEE
Q 002167 138 PSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYL 217 (957)
Q Consensus 138 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L 217 (957)
++|++|++++|.++ .+|..+.. +++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..+. .+++|++|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~-~l~~L~~L 107 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD-GLKSLRLL 107 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT-TCTTCCEE
T ss_pred CCCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhC-CCCCCCEE
Confidence 46667777777766 66665655 77777777777777766666677777777777777777644333443 66777777
Q ss_pred EccCCCCCCCCCcccCCCCcccEEeccCCCCc
Q 002167 218 DLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFV 249 (957)
Q Consensus 218 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 249 (957)
+|++|.++...+..|..+++|++|++++|.+.
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 108 SLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77777776555555666777777777777665
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.3e-13 Score=134.79 Aligned_cols=93 Identities=26% Similarity=0.297 Sum_probs=86.7
Q ss_pred ccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEEC
Q 002167 758 TTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNL 837 (957)
Q Consensus 758 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l 837 (957)
+.++.|+|++|++++..|..|+.+++|+.|+|++|++++..|..|+.+++|++|+|++|++++..|..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 56889999999999999999999999999999999999888888999999999999999999888888999999999999
Q ss_pred ccCcccccCCCCC
Q 002167 838 SNNQLEGPIPGGP 850 (957)
Q Consensus 838 s~N~l~g~ip~~~ 850 (957)
++|++++.++...
T Consensus 110 ~~N~~~c~c~~l~ 122 (170)
T 3g39_A 110 LNNPWDCACSDIL 122 (170)
T ss_dssp CSSCBCTTBGGGH
T ss_pred CCCCCCCCchhHH
Confidence 9999999877433
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=6.6e-13 Score=130.99 Aligned_cols=129 Identities=26% Similarity=0.321 Sum_probs=60.9
Q ss_pred CeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEc
Q 002167 115 RKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDL 194 (957)
Q Consensus 115 ~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 194 (957)
+.++++++.+.. +|..+ .++|++|++++|++. .+|......+++|++|++++|.+++..+..+.++++|++|++
T Consensus 10 ~~l~~~~~~l~~--~p~~~---~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 10 TEIRCNSKGLTS--VPTGI---PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TEEECCSSCCSS--CCTTC---CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCCcc--CCCCC---CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 455555555533 33322 245555555555555 333322222555555555555555444444455555555555
Q ss_pred cCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCcc
Q 002167 195 QSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVG 250 (957)
Q Consensus 195 ~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 250 (957)
++|.+++ +|...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 84 ~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 84 HENKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 5555542 222222244555555555555554333334445555555555555443
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=9.3e-13 Score=131.62 Aligned_cols=109 Identities=31% Similarity=0.401 Sum_probs=58.9
Q ss_pred cccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeec
Q 002167 237 QLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGL 316 (957)
Q Consensus 237 ~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 316 (957)
+|++|++++|+++ .+|..+.. +++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 4455555555554 44444333 555555555555555444455555555555555555555555555555555666666
Q ss_pred cCCcCCCCCCcchhcccCCceEecCCCCCcc
Q 002167 317 AYNELIGSIPSSIFELLNLTEIYLSFSNFSG 347 (957)
Q Consensus 317 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 347 (957)
++|.++...+..+..+++|+.|++++|.+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 6655554333445555666666666665543
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=1.5e-12 Score=128.34 Aligned_cols=113 Identities=20% Similarity=0.211 Sum_probs=73.4
Q ss_pred CCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEc
Q 002167 545 CKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNL 623 (957)
Q Consensus 545 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 623 (957)
++|++|++++|++++..+..+..+++|++|++++|++++..+..+.. ++|++|++++|.+++..+..|..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 45666666666666555555666677777777777666444444433 66666666666666655556666777777777
Q ss_pred cCCcCccCCCccccCCCCCcEEeCCCCccccCcc
Q 002167 624 NGNRLKGPLPPSLVNCQYLEVLDVGNNQIDDTFP 657 (957)
Q Consensus 624 s~n~l~~~~p~~l~~l~~L~~L~ls~n~l~~~~p 657 (957)
++|++++..+..+..+++|++|++++|++.+..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7777765555556667777777777777665543
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=4.9e-13 Score=131.11 Aligned_cols=91 Identities=26% Similarity=0.313 Sum_probs=84.5
Q ss_pred ccceEEEcccCccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEEC
Q 002167 758 TTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNL 837 (957)
Q Consensus 758 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~l 837 (957)
+.|+.|+|++|++++.+|..|+.+++|+.|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 57889999999999999999999999999999999999987777899999999999999999877777999999999999
Q ss_pred ccCcccccCCC
Q 002167 838 SNNQLEGPIPG 848 (957)
Q Consensus 838 s~N~l~g~ip~ 848 (957)
++|++.+.++.
T Consensus 113 ~~N~~~c~~~~ 123 (174)
T 2r9u_A 113 YNNPWDCECRD 123 (174)
T ss_dssp CSSCBCTTBGG
T ss_pred CCCCccccccc
Confidence 99999987653
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.40 E-value=6.3e-13 Score=130.96 Aligned_cols=132 Identities=23% Similarity=0.301 Sum_probs=91.4
Q ss_pred cCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCC
Q 002167 135 DQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQL 214 (957)
Q Consensus 135 ~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L 214 (957)
..+++|++|++++|.+. .+|. +....++|++|++++|.+++. ..+.++++|++|++++|.++ .+|..++..+++|
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 55677777777777777 5553 444244788888888877754 46777888888888888877 4554443377888
Q ss_pred cEEEccCCCCCCCCCc--ccCCCCcccEEeccCCCCccccchh----HhhhccCCcEEECcCCcCC
Q 002167 215 AYLDLSSNSFSGHIPS--SFSNLQQLCYLDLDDNHFVGEIPAS----LGNNITQLAYLDLSSNGFS 274 (957)
Q Consensus 215 ~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~ip~~----l~~~l~~L~~L~Ls~n~l~ 274 (957)
++|++++|.++ .+|. .+..+++|++|++++|.+. .+|.. +.. +++|++||++.|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~-l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYK-VPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHH-CTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHH-CCccceeCCCcCCHH
Confidence 88888888875 3444 6777777888888887776 55654 433 777777777776554
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.39 E-value=4.3e-13 Score=146.82 Aligned_cols=44 Identities=9% Similarity=0.244 Sum_probs=26.2
Q ss_pred CCccEEEeccCCccCCCCccccCCCCCCEEEcccCcCccCCCccc
Q 002167 474 PHMVSFSISNNSLTGEIPSSFCNLSSIQYLDLSNNSLSGQIPQCL 518 (957)
Q Consensus 474 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 518 (957)
++|+.+++.+ .++...+.+|.+|++|+.+++.+|.+....+..+
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF 144 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEAL 144 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSS
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhh
Confidence 5566666666 5555555667777777777777776654444444
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.39 E-value=1.2e-11 Score=138.15 Aligned_cols=241 Identities=13% Similarity=0.107 Sum_probs=163.7
Q ss_pred CCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCC
Q 002167 110 FLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQL 189 (957)
Q Consensus 110 ~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 189 (957)
.+..++.+.+..+ ++ .|+...|.++ +|+.+.+..+ +. .|+...+.+ .+|+.+++.. .+...-+.+|.+|++|
T Consensus 111 ~~~~l~~i~ip~~-i~--~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VK--SIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp ECSSCSEEECCTT-CC--EECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred ecCCccEEEECCc-cC--EehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccC
Confidence 3466777777653 21 2455555665 7888888776 55 666666653 4688888885 5665666778888889
Q ss_pred CEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEEECc
Q 002167 190 RHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLS 269 (957)
Q Consensus 190 ~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls 269 (957)
+.+++.+|.+. .++...+ .+.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++ .|+...+.+ .+|+.+.+.
T Consensus 183 ~~l~l~~n~l~-~I~~~aF-~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 183 KKADLSKTKIT-KLPASTF-VYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP 256 (401)
T ss_dssp CEEECTTSCCS-EECTTTT-TTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE
T ss_pred CeeecCCCcce-EechhhE-eecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC
Confidence 99998888877 6777776 4688888888744 66566677888888888888765 44 666666664 678888884
Q ss_pred CCcCCccCcccccCcCCCcEEEeccCcCc-----ccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecCCCC
Q 002167 270 SNGFSGHIPSSFSNLQQLLWLNLEYNNFV-----GKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLSFSN 344 (957)
Q Consensus 270 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 344 (957)
+.++.....+|.++++|+.+++.++.+. ...+.+|..+++|+.+.+.. .++..-...|.++.+|+.+.+..+
T Consensus 257 -~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 257 -NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN- 333 (401)
T ss_dssp -TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-
T ss_pred -CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-
Confidence 4455455667888888888888776654 34556677777777777773 354344455666677777777543
Q ss_pred CcccccchhhhcCCCCcEEEccccc
Q 002167 345 FSGSVELYDFAKLKNLKVLSLSNIS 369 (957)
Q Consensus 345 l~~~~~~~~l~~l~~L~~L~L~~~~ 369 (957)
+. .+....|.++ +|+.+++.++.
T Consensus 334 l~-~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 334 VT-QINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence 22 3444556666 66666666654
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=8.1e-15 Score=147.70 Aligned_cols=85 Identities=27% Similarity=0.293 Sum_probs=35.8
Q ss_pred hhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCC
Q 002167 157 SLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQ 236 (957)
Q Consensus 157 ~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 236 (957)
.+.. +++|++|++++|.+.+ +| .+.++++|++|++++|.+. .+|..+. .+++|++|++++|.+++ +| .+.+++
T Consensus 43 ~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~-~~~~L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 43 TLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA-VADTLEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp HHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH-HHHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred HHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh-cCCcCCEEECcCCcCCc-CC-ccccCC
Confidence 4443 4455555555444443 33 3444444444444444444 3333332 33444444444444432 12 233333
Q ss_pred cccEEeccCCCC
Q 002167 237 QLCYLDLDDNHF 248 (957)
Q Consensus 237 ~L~~L~Ls~n~l 248 (957)
+|++|++++|++
T Consensus 116 ~L~~L~l~~N~i 127 (198)
T 1ds9_A 116 NLRVLYMSNNKI 127 (198)
T ss_dssp HSSEEEESEEEC
T ss_pred CCCEEECCCCcC
Confidence 444444444433
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.36 E-value=1e-11 Score=138.84 Aligned_cols=246 Identities=13% Similarity=0.077 Sum_probs=186.8
Q ss_pred CccCCCCCCeeeCCCCCCCCCCCCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhccCC
Q 002167 107 SLFFLPRLRKLNLAFNDFNGSKISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNL 186 (957)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 186 (957)
++..+ +|+.+++..+ +. .|....|.++ +|+.+.+.. .+. .++...+.+|++|+.++++.|.++......|. +
T Consensus 131 aF~~~-~L~~i~l~~~-i~--~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~ 202 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LK--SIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y 202 (401)
T ss_dssp TTTTC-CCSEEECCTT-CC--EECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred hcccC-CccEEEeCCC-cc--EECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence 55554 7999999876 43 2555665764 799999986 565 66666666699999999999988866556666 6
Q ss_pred CCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEeccCCCCccccchhHhhhccCCcEE
Q 002167 187 HQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYL 266 (957)
Q Consensus 187 ~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L 266 (957)
.+|+.+.+..+ +. .++...+.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.++ .++...+.+|++|+.+
T Consensus 203 ~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 203 AGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEV 276 (401)
T ss_dssp CCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEE
T ss_pred cccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEE
Confidence 89999999854 54 667666668999999999875 55555667777 789999994 4455 6777777779999999
Q ss_pred ECcCCcCC-----ccCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccCCcCCCCCCcchhcccCCceEecC
Q 002167 267 DLSSNGFS-----GHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAYNELIGSIPSSIFELLNLTEIYLS 341 (957)
Q Consensus 267 ~Ls~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 341 (957)
++.++.+. ...+..|.+|++|+.+.+. +.+......+|.++++|+.+.+..+ ++..-..+|.++ +|+.+++.
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence 99887765 3556778999999999998 4577677788999999999999665 554556678888 99999999
Q ss_pred CCCCcccccchhhhcCC-CCcEEEcccccc
Q 002167 342 FSNFSGSVELYDFAKLK-NLKVLSLSNISL 370 (957)
Q Consensus 342 ~n~l~~~~~~~~l~~l~-~L~~L~L~~~~~ 370 (957)
+|... .+....|.+++ +++.+.+..+..
T Consensus 354 ~n~~~-~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 354 GTTPP-QVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CSSCC-BCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCCCc-ccccccccCCCCCccEEEeCHHHH
Confidence 98776 34445566664 678888877653
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1.7e-12 Score=127.86 Aligned_cols=130 Identities=16% Similarity=0.110 Sum_probs=77.8
Q ss_pred CCCCCccEEEccCCcCCCCCCccccCC-CCCCeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccE
Q 002167 542 AKGCKLTYLRLSGNHLEGPLPPSLTNC-VKLQFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVS 620 (957)
Q Consensus 542 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 620 (957)
..+.+|++|++++|+++. +|. +..+ ++|++|++++|.+++. +..-..++|++|++++|.+++..+..|..+++|+.
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 345667777777777663 343 3333 3777777777777643 22222266777777777766544444566777777
Q ss_pred EEccCCcCccCCCc--cccCCCCCcEEeCCCCccccCccc----cccccccccEEEcccccc
Q 002167 621 LNLNGNRLKGPLPP--SLVNCQYLEVLDVGNNQIDDTFPY----WLDVLLELQVLILRSNRF 676 (957)
Q Consensus 621 L~Ls~n~l~~~~p~--~l~~l~~L~~L~ls~n~l~~~~p~----~l~~l~~L~~L~L~~n~~ 676 (957)
|++++|+++ .+|. .+..+++|+.|++++|+++.. |. .+..+++|++|++++|..
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence 777777764 3443 566677777777777776643 33 255566666665555543
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=2e-14 Score=144.79 Aligned_cols=134 Identities=22% Similarity=0.257 Sum_probs=78.5
Q ss_pred CCCCCEEEccCCcCCCCcch------hccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCC
Q 002167 162 ITQLAYLDLSINSFIGHIPS------SFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNL 235 (957)
Q Consensus 162 l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 235 (957)
...++.++++.+.+.+.+|. .+..+++|++|++++|.+.+ +| .+. ++++|++|++++|.++ .+|..+..+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcC
Confidence 55566666666666555544 66667777777777776663 55 444 5666666666666666 445555555
Q ss_pred CcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCc-ccccCcCCCcEEEeccCcCcccCC
Q 002167 236 QQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIP-SSFSNLQQLLWLNLEYNNFVGKIP 302 (957)
Q Consensus 236 ~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p 302 (957)
++|++|++++|+++ .+| .+.. +++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.+|
T Consensus 93 ~~L~~L~L~~N~l~-~l~-~~~~-l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 93 DTLEELWISYNQIA-SLS-GIEK-LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHCSEEEEEEEECC-CHH-HHHH-HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CcCCEEECcCCcCC-cCC-cccc-CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 66666666666665 344 3433 5666666666666653221 345555666666666665554433
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.27 E-value=1.8e-11 Score=119.48 Aligned_cols=102 Identities=24% Similarity=0.260 Sum_probs=51.6
Q ss_pred CeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCc
Q 002167 572 QFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQ 651 (957)
Q Consensus 572 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~ 651 (957)
+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|+
T Consensus 12 ~~l~~s~n~l~-~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcC-ccCccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 34444444444 2333221 445555555555555555555555555555555555554444445555555555555555
Q ss_pred cccCccccccccccccEEEccccc
Q 002167 652 IDDTFPYWLDVLLELQVLILRSNR 675 (957)
Q Consensus 652 l~~~~p~~l~~l~~L~~L~L~~n~ 675 (957)
+++..+..|..+++|++|+|++|+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCC
Confidence 555444444444444444444443
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.26 E-value=1.1e-10 Score=131.00 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=33.0
Q ss_pred chhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCcccCCCCcccEEecc
Q 002167 180 PSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSFSNLQQLCYLDLD 244 (957)
Q Consensus 180 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 244 (957)
..+|.++.+|+.+.+..+ ++ .+....+.++++|+.+++..+ ++.....+|.++++|+.+.+.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred HHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 345666777777766533 33 444444445666666666543 333334445555555554443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=3.6e-11 Score=117.72 Aligned_cols=103 Identities=21% Similarity=0.246 Sum_probs=55.7
Q ss_pred CeEEcCCCccccccCccccCCcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCCCc
Q 002167 572 QFLDVGNNNLSGQIPECLGNSTLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNNQ 651 (957)
Q Consensus 572 ~~L~Ls~n~l~~~~p~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n~ 651 (957)
+.+++++|.+. .+|..+. ++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|.++++|++|++++|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCC-ccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 34555555543 3444332 455555666666555555556666666666666666665444445566666666666666
Q ss_pred cccCccccccccccccEEEcccccc
Q 002167 652 IDDTFPYWLDVLLELQVLILRSNRF 676 (957)
Q Consensus 652 l~~~~p~~l~~l~~L~~L~L~~n~~ 676 (957)
+++..+..|..+++|++|+|++|++
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred cceeCHHHhccccCCCEEEeCCCCc
Confidence 6554444455555555544444443
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.18 E-value=3.6e-10 Score=126.82 Aligned_cols=158 Identities=13% Similarity=0.013 Sum_probs=101.1
Q ss_pred cCchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEccCCCCCCCCCccc
Q 002167 153 SIPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLSSNSFSGHIPSSF 232 (957)
Q Consensus 153 ~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls~n~l~~~~p~~l 232 (957)
.|....+.++.+|+.+.+..+ ++..-..+|.+|++|+.+++..+ +. .++...+.++.+|+.+.+..+ +......+|
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence 566655556999999999854 66556678999999999999765 44 566666668999998877654 333445566
Q ss_pred CCCCcccEEeccCCCCccccchhHhhhccCCcEEECcCCcCCccCcccccCcCCCcEEEeccCcCcccCCccccccCcCc
Q 002167 233 SNLQQLCYLDLDDNHFVGEIPASLGNNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLS 312 (957)
Q Consensus 233 ~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 312 (957)
.++..++........ .+....+.++++|+.+.+..+. .......|.++.+|+.+.+..+ +......+|.++..|+
T Consensus 137 ~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 137 KGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred ecccccccccCcccc---ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 666554444333322 3334444457777777776543 2244456667777777776654 3334455566666666
Q ss_pred eeeccCC
Q 002167 313 FLGLAYN 319 (957)
Q Consensus 313 ~L~L~~n 319 (957)
.+.+..+
T Consensus 212 ~i~~~~~ 218 (394)
T 4fs7_A 212 NMEFPNS 218 (394)
T ss_dssp BCCCCTT
T ss_pred eeecCCC
Confidence 6665544
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=1.8e-12 Score=143.56 Aligned_cols=137 Identities=20% Similarity=0.195 Sum_probs=67.6
Q ss_pred CCCCeeeCCCCCCCCCC---CCchhhcCCCCCcEEECCCCccCccCchhhhhcCCCCCEEEccCCcCCCCcchhc-----
Q 002167 112 PRLRKLNLAFNDFNGSK---ISSGFTDQFPSLTLLDLCSCNFTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSF----- 183 (957)
Q Consensus 112 ~~L~~L~Ls~n~~~~~~---i~~~~~~~l~~L~~L~Ls~n~l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l----- 183 (957)
++|++|+|++|.++... +...+....++|++|+|++|.+.+.....+...+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45666666666654321 1111111235666677776666543333443335566666666666654333332
Q ss_pred cCCCCCCEEEccCCcCCCC----CchhhhhCCCCCcEEEccCCCCCCCC----CcccCCCCcccEEeccCCCCc
Q 002167 184 SNLHQLRHLDLQSNNFVGK----IPASLGNNITQLAYLDLSSNSFSGHI----PSSFSNLQQLCYLDLDDNHFV 249 (957)
Q Consensus 184 ~~l~~L~~L~L~~n~l~~~----~p~~l~~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~ 249 (957)
...++|++|+|++|.++.. ++..+. .+++|++|+|++|.+++.. +..+...++|++|+|++|.++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLA-GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHH-TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHh-cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 2345566666666655421 122222 4555556666555554321 233444455555555555554
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.16 E-value=1.4e-12 Score=144.39 Aligned_cols=63 Identities=25% Similarity=0.336 Sum_probs=26.6
Q ss_pred ccCCcEEECcCCcCCcc----CcccccCcCCCcEEEeccCcCccc----CCccccccCcCceeeccCCcCC
Q 002167 260 ITQLAYLDLSSNGFSGH----IPSSFSNLQQLLWLNLEYNNFVGK----IPDMFTNLTQLSFLGLAYNELI 322 (957)
Q Consensus 260 l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 322 (957)
+++|++|+|++|.+++. ++..+...++|++|+|++|.+++. ++..+...++|++|+|++|.++
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 34444555544444321 122333444455555555544431 1122233344555555555443
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=6.6e-11 Score=130.52 Aligned_cols=90 Identities=22% Similarity=0.244 Sum_probs=83.1
Q ss_pred cccceEEEccc-CccCccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeE
Q 002167 757 LTTFATIDLSS-NRFQRKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVL 835 (957)
Q Consensus 757 l~~L~~L~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L 835 (957)
+++|+.|+|++ |.|++..|..|++|++|+.|+|++|+|++..|..|++|++|++|||++|+|++..|..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 46789999996 999999999999999999999999999999999999999999999999999987777777776 9999
Q ss_pred ECccCcccccCC
Q 002167 836 NLSNNQLEGPIP 847 (957)
Q Consensus 836 ~ls~N~l~g~ip 847 (957)
++++|++.+.++
T Consensus 109 ~l~~N~~~c~c~ 120 (347)
T 2ifg_A 109 VLSGNPLHCSCA 120 (347)
T ss_dssp ECCSSCCCCCGG
T ss_pred EeeCCCccCCCc
Confidence 999999998765
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=1.7e-09 Score=119.16 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=65.6
Q ss_pred EECCCC-ccCccCchhhhhcCCCCCEEEccC-CcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhhhCCCCCcEEEcc
Q 002167 143 LDLCSC-NFTGSIPPSLGNNITQLAYLDLSI-NSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLGNNITQLAYLDLS 220 (957)
Q Consensus 143 L~Ls~n-~l~~~ip~~l~~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~~l~~L~~L~Ls 220 (957)
++++++ +++ .+|. +.. +++|++|+|++ |.+.+..+..|.++++|++|+|++|++++..|..+. ++++|++|+|+
T Consensus 13 v~~~~~n~l~-~ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~ 88 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLNLS 88 (347)
T ss_dssp EECCSSCCCT-TTTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG-SCSCCCEEECC
T ss_pred EEcCCCCCCC-ccCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc-CCcCCCEEeCC
Confidence 466665 565 5666 554 66677777764 666666666667777777777777776654444444 67777777777
Q ss_pred CCCCCCCCCcccCCCCcccEEeccCCCCc
Q 002167 221 SNSFSGHIPSSFSNLQQLCYLDLDDNHFV 249 (957)
Q Consensus 221 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 249 (957)
+|++++..+..+..++ |++|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 7777655555555554 777777777765
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.93 E-value=6.5e-08 Score=108.32 Aligned_cols=108 Identities=13% Similarity=0.225 Sum_probs=44.5
Q ss_pred CcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCC
Q 002167 539 QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCV 617 (957)
Q Consensus 539 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~ 617 (957)
..|..+..|+.+.+.++.. ......|.++++|+.+.+.. .++..-...+.. .+|+.+++..+ ++.....+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 3455555566665544322 12334455555555555532 222111222222 44444444332 22222334444444
Q ss_pred ccEEEccCCcCccCCCccccCCCCCcEEeCCCC
Q 002167 618 LVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGNN 650 (957)
Q Consensus 618 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~n 650 (957)
|+.+.+..+ ++..-..+|.+|++|+.+++.++
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 444444322 22222234444444444444443
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.91 E-value=8.5e-08 Score=107.36 Aligned_cols=132 Identities=12% Similarity=0.216 Sum_probs=69.2
Q ss_pred CccccCCCCCCEEEcccCcCccCCCccccccccceeecccccccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCC
Q 002167 491 PSSFCNLSSIQYLDLSNNSLSGQIPQCLGNSTLETLDLRMNNFQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVK 570 (957)
Q Consensus 491 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 570 (957)
..+|.++..|+.+.+.++... .....+..+.+|+.+.+. +.++......|.+|.+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~------------------------I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~ 312 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS------------------------IGTGAFMNCPALQDIEFS-SRITELPESVFAGCIS 312 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE------------------------ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTT
T ss_pred cceeeecccccEEecccccce------------------------ecCcccccccccccccCC-CcccccCceeecCCCC
Confidence 345667777777776544321 112233444555555553 2333333445666666
Q ss_pred CCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCccEEEccCCcCccCCCccccCCCCCcEEeCCC
Q 002167 571 LQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVLVSLNLNGNRLKGPLPPSLVNCQYLEVLDVGN 649 (957)
Q Consensus 571 L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~ 649 (957)
|+.+++..+ ++..-...+.. .+|+.+.+..+ ++..-..+|.++++|+.+++.++.... ..+..++.|+.+.+..
T Consensus 313 L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 313 LKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP 387 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred cCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence 666666543 33222333433 66666666543 444455678889999999998876542 4567788888887766
Q ss_pred Ccc
Q 002167 650 NQI 652 (957)
Q Consensus 650 n~l 652 (957)
+.+
T Consensus 388 ~~~ 390 (394)
T 4gt6_A 388 GSI 390 (394)
T ss_dssp ---
T ss_pred CCE
Confidence 543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=7.9e-09 Score=113.12 Aligned_cols=142 Identities=16% Similarity=0.277 Sum_probs=78.2
Q ss_pred CchhhhhcCCCCCEEEccCCcCCCCcchhccCCCCCCEEEccCCcCCCCCchhhh-hCCCCCcEEEccC--CCCCCC---
Q 002167 154 IPPSLGNNITQLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNNFVGKIPASLG-NNITQLAYLDLSS--NSFSGH--- 227 (957)
Q Consensus 154 ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~~l~~L~~L~Ls~--n~l~~~--- 227 (957)
++..+.. +++|+.|+|++|.-. .++. +. +++|++|++..|.+.......+. ..+++|++|+|+. +...+.
T Consensus 164 L~~ll~~-~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 164 LSPVLDA-MPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp CHHHHHT-CTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHHHhc-CCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 4444444 677777777766311 2222 32 67778887777766533333333 1577788877753 111111
Q ss_pred --CCccc--CCCCcccEEeccCCCCccccchhHhh--hccCCcEEECcCCcCCcc----CcccccCcCCCcEEEeccCcC
Q 002167 228 --IPSSF--SNLQQLCYLDLDDNHFVGEIPASLGN--NITQLAYLDLSSNGFSGH----IPSSFSNLQQLLWLNLEYNNF 297 (957)
Q Consensus 228 --~p~~l--~~l~~L~~L~Ls~n~l~~~ip~~l~~--~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l 297 (957)
+...+ ..+++|++|++++|.+.+..+..+.. .+++|++|+|+.|.+.+. ++..+..+++|+.|+++.|.+
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 01112 24677888888877776544444432 256677777777766643 223334556666666666655
Q ss_pred cc
Q 002167 298 VG 299 (957)
Q Consensus 298 ~~ 299 (957)
+.
T Consensus 320 ~d 321 (362)
T 2ra8_A 320 SD 321 (362)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=2.2e-09 Score=117.49 Aligned_cols=203 Identities=16% Similarity=0.186 Sum_probs=134.2
Q ss_pred CcEEEEEcCCCCCcc-c-------cCCCCCccCCCCCCeeeCCCCCCCCC--------CCCchhhcCCCCCcEEECCCCc
Q 002167 86 GHVIGLDLSCSWLHG-N-------IPSNSSLFFLPRLRKLNLAFNDFNGS--------KISSGFTDQFPSLTLLDLCSCN 149 (957)
Q Consensus 86 ~~v~~l~L~~~~l~g-~-------~~~~~~l~~l~~L~~L~Ls~n~~~~~--------~i~~~~~~~l~~L~~L~Ls~n~ 149 (957)
.+|+.|.+......| . +.. ++..+++|+.|.+........ .+. .++..+++|+.|+|++|.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~--s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~ 183 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVE--NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTN 183 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHT--THHHHTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHH--hhhhcchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCC
Confidence 468888888766543 1 122 456789999999976543211 133 334789999999999884
Q ss_pred cCccCchhhhhcCCCCCEEEccCCcCCCCcchhcc--CCCCCCEEEccC--CcCCCC-----Cchhhh-hCCCCCcEEEc
Q 002167 150 FTGSIPPSLGNNITQLAYLDLSINSFIGHIPSSFS--NLHQLRHLDLQS--NNFVGK-----IPASLG-NNITQLAYLDL 219 (957)
Q Consensus 150 l~~~ip~~l~~~l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~--n~l~~~-----~p~~l~-~~l~~L~~L~L 219 (957)
-. .++. + . +++|++|+|..|.+.......+. .+++|++|+|+. +...+. +...+. ..+++|++|+|
T Consensus 184 ~l-~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L 259 (362)
T 2ra8_A 184 NL-SIGK-K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259 (362)
T ss_dssp TC-BCCS-C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred Cc-eecc-c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence 22 3444 3 3 88999999999887655444444 799999999863 221111 111111 25799999999
Q ss_pred cCCCCCCCCCccc---CCCCcccEEeccCCCCccccchhHh---hhccCCcEEECcCCcCCccCcccccCcCCCcEEEec
Q 002167 220 SSNSFSGHIPSSF---SNLQQLCYLDLDDNHFVGEIPASLG---NNITQLAYLDLSSNGFSGHIPSSFSNLQQLLWLNLE 293 (957)
Q Consensus 220 s~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~ip~~l~---~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 293 (957)
.+|.+.+..+..+ ..+++|++|+|+.|.+.+..+..+. ..+++|+.|++++|.++...-..+...- ...++++
T Consensus 260 ~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~ 338 (362)
T 2ra8_A 260 VDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVS 338 (362)
T ss_dssp ESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECC
T ss_pred CCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEec
Confidence 9999875433333 3578999999999998864333332 2379999999999998765444444311 3557776
Q ss_pred cCc
Q 002167 294 YNN 296 (957)
Q Consensus 294 ~n~ 296 (957)
.++
T Consensus 339 ~~~ 341 (362)
T 2ra8_A 339 DSQ 341 (362)
T ss_dssp SBC
T ss_pred CCc
Confidence 665
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.56 E-value=3.4e-06 Score=93.73 Aligned_cols=107 Identities=19% Similarity=0.133 Sum_probs=51.5
Q ss_pred CcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCC
Q 002167 539 QTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCV 617 (957)
Q Consensus 539 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~ 617 (957)
..+..+..|+.+.+..+ ++......+.++.+|+.+.+..+ +...-...+.. .+|+.+.+.++.++.....+|.++.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 33444555666655443 33333445555666666665433 22111122222 45555555555444444445555555
Q ss_pred ccEEEccCCcCccCCCccccCCCCCcEEeCC
Q 002167 618 LVSLNLNGNRLKGPLPPSLVNCQYLEVLDVG 648 (957)
Q Consensus 618 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls 648 (957)
|+.++|..+ ++..-..+|.+|++|+.+.+.
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 666655433 332333455555556555554
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.44 E-value=1.2e-05 Score=89.42 Aligned_cols=99 Identities=9% Similarity=0.070 Sum_probs=52.8
Q ss_pred cCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCCccccccCccccC-CcccEEECCCCcCCCCCccccccCCCc
Q 002167 540 TNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNNNLSGQIPECLGN-STLQVLDMRMNNFSGSLPQTFAKSCVL 618 (957)
Q Consensus 540 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-~~L~~L~Ls~n~l~~~~p~~~~~l~~L 618 (957)
.+..+.+|+.+.+..+ +.......|.+|++|+.+.+.++.++..-...+.. .+|+.++|..+ ++..-..+|.++.+|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 3444455555555432 32233344555666666666555554333334433 55666666533 443445677888888
Q ss_pred cEEEccCCcCccCCCccccCCCC
Q 002167 619 VSLNLNGNRLKGPLPPSLVNCQY 641 (957)
Q Consensus 619 ~~L~Ls~n~l~~~~p~~l~~l~~ 641 (957)
+.+.+..+ ++..-..+|.+|..
T Consensus 336 ~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 336 STISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CCCCCCTT-CCEECTTTTTTSSC
T ss_pred CEEEECCc-cCEEchhHhhCCCC
Confidence 88877654 44334456666643
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=1.8e-07 Score=96.85 Aligned_cols=84 Identities=29% Similarity=0.347 Sum_probs=60.2
Q ss_pred EEcccCcc---CccCcccccccCCCcEEECCCCcCCC--CCchhhhhccCCCEEECCCCcccccCcccCcCCC--CCCeE
Q 002167 763 IDLSSNRF---QRKIPEVVGKLNSLKSLNISHNNLTG--CIPSSLRNLTELESLDLSSNKLAGRIPTQLASLN--YLSVL 835 (957)
Q Consensus 763 L~Ls~N~l---~~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~--~L~~L 835 (957)
++++.|.. .+.++....+++.|+.|+||+|++++ .+|..++.+++|+.|+|++|++++. ..+..+. .|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 55666632 22223333567888888888888888 5667788888888999998888875 3344444 88889
Q ss_pred ECccCcccccCCC
Q 002167 836 NLSNNQLEGPIPG 848 (957)
Q Consensus 836 ~ls~N~l~g~ip~ 848 (957)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999998887773
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.32 E-value=4.3e-07 Score=94.00 Aligned_cols=80 Identities=29% Similarity=0.383 Sum_probs=68.6
Q ss_pred hhcccceEEEcccCccCc--cCcccccccCCCcEEECCCCcCCCCCchhhhhcc--CCCEEECCCCcccccCcc------
Q 002167 755 RILTTFATIDLSSNRFQR--KIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLT--ELESLDLSSNKLAGRIPT------ 824 (957)
Q Consensus 755 ~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~--~L~~L~Ls~N~l~g~ip~------ 824 (957)
+.++.|+.|+|++|+|++ .+|..++.+++|+.|+|++|++++. +.+..+. +|++|+|++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457899999999999999 6678888999999999999999986 4466666 999999999999998873
Q ss_pred -cCcCCCCCCeEE
Q 002167 825 -QLASLNYLSVLN 836 (957)
Q Consensus 825 -~l~~l~~L~~L~ 836 (957)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 367788888876
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.28 E-value=2.8e-07 Score=90.84 Aligned_cols=86 Identities=24% Similarity=0.295 Sum_probs=50.2
Q ss_pred ccceEEEcccCccCcc----CcccccccCCCcEEECCCCcCCCC----CchhhhhccCCCEEEC--CCCccccc----Cc
Q 002167 758 TTFATIDLSSNRFQRK----IPEVVGKLNSLKSLNISHNNLTGC----IPSSLRNLTELESLDL--SSNKLAGR----IP 823 (957)
Q Consensus 758 ~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~L~~L~~L~L--s~N~l~g~----ip 823 (957)
+.|+.|||++|.+... +.+.+...++|+.|+|++|.++.. +...+...++|++|+| ++|.+... +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 4566666666666542 233334445666677777766643 3444555566777777 66666543 23
Q ss_pred ccCcCCCCCCeEECccCccc
Q 002167 824 TQLASLNYLSVLNLSNNQLE 843 (957)
Q Consensus 824 ~~l~~l~~L~~L~ls~N~l~ 843 (957)
..+...++|++|++++|++.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 34445566777777777664
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.12 E-value=1.1e-06 Score=86.51 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=9.5
Q ss_pred cCCCCCcEEECCCC-ccC
Q 002167 135 DQFPSLTLLDLCSC-NFT 151 (957)
Q Consensus 135 ~~l~~L~~L~Ls~n-~l~ 151 (957)
...++|++|+|++| .+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp TTCTTCCEEECTTCTTCC
T ss_pred hcCCCCCEEEecCCCCCC
Confidence 44555666666555 554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.77 E-value=9.3e-06 Score=77.70 Aligned_cols=83 Identities=12% Similarity=0.150 Sum_probs=43.1
Q ss_pred CCCEEEccCCcCCCCcchhccCCCCCCEEEccCCc-CCCCCchhhhhCC----CCCcEEEccCCC-CCCCCCcccCCCCc
Q 002167 164 QLAYLDLSINSFIGHIPSSFSNLHQLRHLDLQSNN-FVGKIPASLGNNI----TQLAYLDLSSNS-FSGHIPSSFSNLQQ 237 (957)
Q Consensus 164 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~ 237 (957)
+|++||+++|.++..--..+.++++|++|+|++|. +++.--..+. .+ ++|++|+|++|. +++..-..+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~-~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS-QLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHH-TCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHH-hcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 34555555554443333344555666666666653 4433233333 22 356666666653 55433344556667
Q ss_pred ccEEeccCCC
Q 002167 238 LCYLDLDDNH 247 (957)
Q Consensus 238 L~~L~Ls~n~ 247 (957)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777664
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.69 E-value=1.2e-05 Score=77.01 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=69.5
Q ss_pred ccceEEEcccCccCccCcccccccCCCcEEECCCCc-CCCCCchhhhhc----cCCCEEECCCCc-ccccCcccCcCCCC
Q 002167 758 TTFATIDLSSNRFQRKIPEVVGKLNSLKSLNISHNN-LTGCIPSSLRNL----TELESLDLSSNK-LAGRIPTQLASLNY 831 (957)
Q Consensus 758 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~L----~~L~~L~Ls~N~-l~g~ip~~l~~l~~ 831 (957)
..|+.||+++|.++..--..+..+++|+.|+|++|. ++..--..++.+ ++|++|||++|. ++..-=..++.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999998777788999999999999995 776544556654 379999999985 77654456788999
Q ss_pred CCeEECccCc
Q 002167 832 LSVLNLSNNQ 841 (957)
Q Consensus 832 L~~L~ls~N~ 841 (957)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999985
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.69 E-value=0.0018 Score=58.87 Aligned_cols=60 Identities=22% Similarity=0.303 Sum_probs=39.4
Q ss_pred EEECCCCcCC-CCCchhhhhccCCCEEECCCCcccccCcccCcCCCCCCeEECccCcccccCC
Q 002167 786 SLNISHNNLT-GCIPSSLRNLTELESLDLSSNKLAGRIPTQLASLNYLSVLNLSNNQLEGPIP 847 (957)
Q Consensus 786 ~L~Ls~N~l~-~~ip~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~ip 847 (957)
.++-+++.++ ..+|..+. .+|++|||++|+|+...+..|..+++|+.|+|++|++.+.+-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 4566666665 34454322 357777777777776666667777788888888888776543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.63 E-value=0.00036 Score=68.00 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=29.4
Q ss_pred CCccEEEccCC-cCCCC----CCccccCCCCCCeEEcCCCccccccCcccc-----CCcccEEECCCCcCC
Q 002167 545 CKLTYLRLSGN-HLEGP----LPPSLTNCVKLQFLDVGNNNLSGQIPECLG-----NSTLQVLDMRMNNFS 605 (957)
Q Consensus 545 ~~L~~L~Ls~n-~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-----~~~L~~L~Ls~n~l~ 605 (957)
+.|++|+|++| ++... +.+.+..-+.|+.|+|++|++.+.--..+. +++|++|+|+.|.|.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 45666666654 44321 223344445566666666665432222211 145555555555555
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.52 E-value=0.00096 Score=65.01 Aligned_cols=86 Identities=21% Similarity=0.203 Sum_probs=52.2
Q ss_pred ccCCCCCCeEEcCCC-ccccc----cCccccC-CcccEEECCCCcCCCC----CccccccCCCccEEEccCCcCccC---
Q 002167 565 LTNCVKLQFLDVGNN-NLSGQ----IPECLGN-STLQVLDMRMNNFSGS----LPQTFAKSCVLVSLNLNGNRLKGP--- 631 (957)
Q Consensus 565 l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~-~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~--- 631 (957)
+.+-+.|+.|+|++| ++... +-+.+.. ..|+.|+|++|.+... +.+.+..-+.|+.|+|++|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344567888888875 65431 2222333 6788888888877642 334445566777777777777642
Q ss_pred -CCccccCCCCCcEEeCCCC
Q 002167 632 -LPPSLVNCQYLEVLDVGNN 650 (957)
Q Consensus 632 -~p~~l~~l~~L~~L~ls~n 650 (957)
+.+.+..-+.|++|+|++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 2234555566777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.49 E-value=0.004 Score=56.58 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=48.8
Q ss_pred eEEEcccCccC-ccCcccccccCCCcEEECCCCcCCCCCchhhhhccCCCEEECCCCccc
Q 002167 761 ATIDLSSNRFQ-RKIPEVVGKLNSLKSLNISHNNLTGCIPSSLRNLTELESLDLSSNKLA 819 (957)
Q Consensus 761 ~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~l~ 819 (957)
..+|-++++++ ..+|..+. .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36899999997 46776544 47999999999999888888999999999999999885
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.37 E-value=96 Score=25.80 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=30.0
Q ss_pred ccCcCCCcCCCCCCccEEEccCCcCCCCCCccccCCCCCCeEEcCCC
Q 002167 533 FQGSIPQTNAKGCKLTYLRLSGNHLEGPLPPSLTNCVKLQFLDVGNN 579 (957)
Q Consensus 533 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 579 (957)
++..-...|..|.+|+.+.+-.+ ++.+-...|.+|.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 33444556677777777777654 44455567777888887777654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.39 E-value=1.8e+02 Score=24.11 Aligned_cols=42 Identities=21% Similarity=0.059 Sum_probs=23.6
Q ss_pred cCcccccCcCCCcEEEeccCcCcccCCccccccCcCceeeccC
Q 002167 276 HIPSSFSNLQQLLWLNLEYNNFVGKIPDMFTNLTQLSFLGLAY 318 (957)
Q Consensus 276 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 318 (957)
.-..+|.++++|+.+.+-.+ ++.....+|.++.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33445666666666666543 3334445566666666666654
Done!