Your job contains 1 sequence.
>002168
MAPPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAF
VYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLK
FGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPN
SHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLH
NAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG
KDYPGSYSGTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPNNFAGHLQPADIRGPSMPMRS
IGAHGGHETLLSGPDFKDFHSMQDPNAKNLDPNWRRPSPSPGIRTSPTQGIRQPLNHAPG
SWDVYDANQFQRDSKRLRVDGSMPIDDATFPSRKIDDHGLVLDQSYGLGSITGGPASGAF
VNVQGRNRLSPVASKVTAGGFGRNPIDSDFIWRGIIAKGGTPVCRARCVPFGKGIESELP
EVVNCSARTGLDMLAKHYAEAIGFDIVFFLPDSEDDFASYTEFLRYLGSKNRAGVAKFDD
GTTLFLVPPSDFLSKVLKVVGPERLYGVVLKLPQQAMVPPQTVDKQNIPPPHAEYGLTRP
KEEHVLPVDYNRFSHDDSKVQSKMHFPHASEPLIAHSSSMDYGSNNAAAISQAGVKLTPE
LIATLTSLIPATKSAEVAPGSSSARPLLAEPHVQSIEQLGNHYNPQAQSLTHHYASMSST
PSHSAQMLLGNNQLQESTASLSQQGMVYSRPLPNFSIAPQAAPVAVSPPVHQQYQFAAPS
NSQKGYGMMQGTEASTLYGSSVFQQPNNPTAVSNQVNLSQPQNVMTVSVDKVNLEHPNHV
QQLQSVLSGAGQGTSDGEVDKNQRYQSTLQFAANLLLQIQQQQQTNSPAGRGTGNQQ
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002168
(957 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2058203 - symbol:FPA species:3702 "Arabidopsis... 893 4.3e-169 2
TAIR|locus:2135605 - symbol:AT4G12640 species:3702 "Arabi... 376 2.3e-66 3
ZFIN|ZDB-GENE-080204-91 - symbol:rbm15b "RNA binding moti... 259 4.5e-19 2
UNIPROTKB|E1C9H9 - symbol:MANF "Uncharacterized protein" ... 244 4.2e-17 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 239 5.5e-17 2
ZFIN|ZDB-GENE-041008-192 - symbol:rbm15 "RNA binding moti... 246 2.0e-16 2
UNIPROTKB|Q8NDT2 - symbol:RBM15B "Putative RNA-binding pr... 234 1.2e-15 1
RGD|1305937 - symbol:Rbm15b "RNA binding motif protein 15... 234 5.7e-15 3
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 221 7.7e-15 2
UNIPROTKB|J9PBG8 - symbol:RBM15 "Uncharacterized protein"... 226 1.0e-14 1
UNIPROTKB|F1S620 - symbol:RBM15 "Uncharacterized protein"... 226 1.0e-14 1
UNIPROTKB|E2R9C6 - symbol:RBM15 "Uncharacterized protein"... 226 1.0e-14 1
UNIPROTKB|Q96T37 - symbol:RBM15 "Putative RNA-binding pro... 226 1.0e-14 1
UNIPROTKB|F1S619 - symbol:RBM15 "Uncharacterized protein"... 226 1.0e-14 1
UNIPROTKB|E1BFX6 - symbol:RBM15 "Uncharacterized protein"... 225 1.2e-14 1
MGI|MGI:1923598 - symbol:Rbm15b "RNA binding motif protei... 234 1.4e-14 2
UNIPROTKB|F1SIZ8 - symbol:RBM15B "Uncharacterized protein... 234 1.5e-14 2
UNIPROTKB|E2RPV8 - symbol:RBM15B "Uncharacterized protein... 234 1.5e-14 2
UNIPROTKB|F6RM04 - symbol:RBM15B "Uncharacterized protein... 230 4.6e-14 2
FB|FBgn0027548 - symbol:nito "spenito" species:7227 "Dros... 206 2.3e-13 3
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 185 4.3e-13 2
UNIPROTKB|F1NRZ4 - symbol:LOC100859595 "Uncharacterized p... 220 5.7e-13 2
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 187 5.8e-13 2
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 187 5.8e-13 2
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 187 7.6e-13 2
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 187 8.0e-13 2
ZFIN|ZDB-GENE-040426-1811 - symbol:zgc:77262 "zgc:77262" ... 197 1.2e-12 1
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 191 1.6e-12 2
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 195 1.8e-12 2
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 183 1.8e-12 2
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 182 2.0e-12 2
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 187 2.2e-12 2
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 187 2.2e-12 2
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 191 2.2e-12 1
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 187 2.4e-12 2
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 190 2.5e-12 1
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 187 2.6e-12 2
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 187 2.6e-12 2
ZFIN|ZDB-GENE-040426-2455 - symbol:rbm14b "RNA binding mo... 197 2.8e-12 2
UNIPROTKB|E9PB51 - symbol:RBM4 "RNA-binding protein 4" sp... 176 3.4e-12 1
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 182 4.9e-12 2
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 183 6.9e-12 2
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 183 7.1e-12 2
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 183 7.1e-12 2
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 183 7.4e-12 2
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 172 9.2e-12 1
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 182 9.4e-12 2
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 182 9.4e-12 2
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 182 9.4e-12 2
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 182 9.5e-12 2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 182 1.0e-11 2
DICTYBASE|DDB_G0269286 - symbol:DDB_G0269286 species:4468... 138 1.1e-11 3
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r... 171 1.2e-11 1
UNIPROTKB|Q5ZIH1 - symbol:HNRNPD "Uncharacterized protein... 179 1.3e-11 2
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 179 1.5e-11 2
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 182 1.6e-11 2
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 182 1.6e-11 2
WB|WBGene00017929 - symbol:grld-1 species:6239 "Caenorhab... 192 1.7e-11 1
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 179 2.9e-11 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 178 3.3e-11 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 187 3.5e-11 1
DICTYBASE|DDB_G0274995 - symbol:DDB_G0274995 "Uncharacter... 131 4.4e-11 2
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ... 164 6.5e-11 1
UNIPROTKB|E9PM61 - symbol:RBM4B "RNA-binding protein 4B" ... 164 6.5e-11 1
RGD|1306891 - symbol:Rbm4 "RNA binding motif protein 4" s... 164 6.5e-11 1
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor... 175 6.6e-11 2
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp... 175 6.6e-11 2
UNIPROTKB|Q06AT9 - symbol:RBM4B "RNA-binding protein 4B" ... 182 8.8e-11 1
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 178 9.3e-11 2
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 183 9.7e-11 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 187 1.1e-10 2
UNIPROTKB|D6R9K7 - symbol:RBM4 "RNA-binding protein 4" sp... 162 1.1e-10 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 180 1.3e-10 1
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 181 1.6e-10 2
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 184 1.6e-10 2
UNIPROTKB|Q9BQ04 - symbol:RBM4B "RNA-binding protein 4B" ... 179 1.9e-10 1
UNIPROTKB|J3QRR5 - symbol:RBM4 "RNA-binding protein 4" sp... 159 2.2e-10 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 182 2.3e-10 2
UNIPROTKB|E2RSD7 - symbol:RBM4B "Uncharacterized protein"... 178 2.4e-10 1
UNIPROTKB|Q9BDY9 - symbol:RBM4 "RNA-binding protein 4" sp... 178 2.4e-10 1
RGD|1359343 - symbol:Rbm4b "RNA binding motif protein 4B"... 178 3.1e-10 2
UNIPROTKB|Q64LC9 - symbol:Rbm4b "RNA-binding protein 4B" ... 178 3.1e-10 2
UNIPROTKB|Q2KIV3 - symbol:RBM4B "Uncharacterized protein"... 177 3.2e-10 1
UNIPROTKB|D4A1W5 - symbol:Rbm4 "Protein Rbm4" species:101... 177 3.2e-10 1
UNIPROTKB|E2RS70 - symbol:RBM4 "Uncharacterized protein" ... 177 3.3e-10 1
MGI|MGI:1913895 - symbol:Pspc1 "paraspeckle protein 1" sp... 158 3.4e-10 2
UNIPROTKB|H9L1A3 - symbol:LOC100859076 "Uncharacterized p... 174 3.9e-10 1
WB|WBGene00004705 - symbol:rsp-8 species:6239 "Caenorhabd... 174 4.1e-10 1
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 182 4.2e-10 2
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 182 4.2e-10 2
UNIPROTKB|Q3MHX3 - symbol:RBM4 "RNA-binding protein 4" sp... 176 4.2e-10 1
UNIPROTKB|Q9BWF3 - symbol:RBM4 "RNA-binding protein 4" sp... 176 4.3e-10 1
UNIPROTKB|Q4R979 - symbol:RBM4 "RNA-binding protein 4" sp... 176 4.3e-10 1
RGD|1309950 - symbol:Hnrpdl "heterogeneous nuclear ribonu... 174 4.8e-10 1
UNIPROTKB|Q3SWU3 - symbol:Hnrpdl "Heterogeneous nuclear r... 174 4.8e-10 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 160 4.9e-10 3
MGI|MGI:1891706 - symbol:Spen "SPEN homolog, transcriptio... 198 5.5e-10 3
MGI|MGI:1913954 - symbol:Rbm4b "RNA binding motif protein... 178 6.3e-10 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 126 6.4e-10 2
UNIPROTKB|Q1LZD9 - symbol:PSPC1 "Paraspeckle component 1"... 157 6.9e-10 2
WARNING: Descriptions of 756 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2058203 [details] [associations]
symbol:FPA species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=IMP] [GO:0000785 "chromatin"
evidence=IDA] [GO:0009553 "embryo sac development" evidence=IGI]
[GO:0009790 "embryo development" evidence=IGI] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0006378 "mRNA
polyadenylation" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0030154 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0000785
GO:GO:0006351 GO:GO:0003723 GO:GO:0009790 GO:GO:0009911
GO:GO:0031048 GO:GO:0010228 GO:GO:0009908 GO:GO:0009553
EMBL:AC002335 InterPro:IPR012921 Pfam:PF07744 HSSP:Q9V535
EMBL:AY849993 EMBL:AY094463 EMBL:BT003029 EMBL:AK317032
EMBL:AK318833 IPI:IPI00545884 IPI:IPI00852356 IPI:IPI00955350
RefSeq:NP_001078046.1 RefSeq:NP_001078047.1 RefSeq:NP_001078048.1
RefSeq:NP_181869.2 UniGene:At.12188 UniGene:At.36898
ProteinModelPortal:Q8LPQ9 SMR:Q8LPQ9 IntAct:Q8LPQ9 STRING:Q8LPQ9
PaxDb:Q8LPQ9 PRIDE:Q8LPQ9 EnsemblPlants:AT2G43410.2
EnsemblPlants:AT2G43410.3 EnsemblPlants:AT2G43410.4 GeneID:818942
KEGG:ath:AT2G43410 TAIR:At2g43410 eggNOG:NOG250829
HOGENOM:HOG000015139 InParanoid:A8MQX1 OMA:TSAYIDF PhylomeDB:Q8LPQ9
ProtClustDB:CLSN2697851 Genevestigator:Q8LPQ9 PROSITE:PS50917
Uniprot:Q8LPQ9
Length = 901
Score = 893 (319.4 bits), Expect = 4.3e-169, Sum P(2) = 4.3e-169
Identities = 192/397 (48%), Positives = 258/397 (64%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGS 79
S+NLWVG+L+ +TT++DL ELFG++G +D++T YSSR FAF+Y++ VE+A AAK+ALQG+
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 80 DFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVE 139
+ G+ IKIE+ARPAKP K LWVGGI VSK++LEE F KFG IEDF+FL++ TAF++
Sbjct: 77 NLNGSQIKIEYARPAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFID 136
Query: 140 YSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDN 199
Y ++DA +A K++NG+ +GG LRVDFLRSQ ++EQW S+D R+G + N
Sbjct: 137 YYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNM---------N 186
Query: 200 HSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQM--DEQMLHNAMILFGEIERIKSYPS 257
H K +P S D PSK+LW+G+PP+ DEQ+LHNAMILFGEIER+KSYPS
Sbjct: 187 H---KPQYPHSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPS 243
Query: 258 RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPGSYSGTKGPRSEM 317
RN++ VEFRS +EAR+ KEGLQGRLFN+PRI IM+S+ EL P +D YSG K R++M
Sbjct: 244 RNFALVEFRSAEEARQCKEGLQGRLFNNPRIKIMYSNDELPPEQDDTSFYSGMKRSRTDM 303
Query: 318 FFGDQIRPSQLDMLGPNQSMQP---NNFAGH--LQPADIRGPSMPMRSIGAHG-GHETLL 371
F D S G SM+P N + + D+ G R A+G G
Sbjct: 304 FNNDPSFVSSPHSTGIPGSMRPLRGTNERSYNGAEYNDVVGKEPNWRRPSANGTGILPSP 363
Query: 372 SGPDF--KDFHSMQDPNAKNLDPNWRRPSPSPGIRTS 406
+GP + P N D +W P+ +R S
Sbjct: 364 TGPGILPSPAQGTRRPMRSNPD-SWEGYDPAQLVRES 399
Score = 773 (277.2 bits), Expect = 4.3e-169, Sum P(2) = 4.3e-169
Identities = 213/460 (46%), Positives = 261/460 (56%)
Query: 503 RNPIDSDFIWRGIIAKGGTPVCRARCVPFGKGIESELPEVVNCSARTGLDMLAKHYAEAI 562
R P DSD IWRG+IAKGGTPVC ARCVP GKGIE++LPEVVNCSART L+MLAKHYA AI
Sbjct: 432 RGPPDSDHIWRGMIAKGGTPVCCARCVPMGKGIETKLPEVVNCSARTDLNMLAKHYAVAI 491
Query: 563 GFDIVFFLPDSEDDFASYTEFLRYLGSKNRAGVAKFDDGTTLFLVPPSDFLSKVLKVVGP 622
G +IVFF+PD E+DFASYTEFLRYL SK+RAGVAK DDGTTLFLVPPSDFL+ VL+V
Sbjct: 492 GCEIVFFVPDREEDFASYTEFLRYLSSKDRAGVAKLDDGTTLFLVPPSDFLTDVLQVTRQ 551
Query: 623 ERLYGVVLKLPQQAMVPPQTVDKQNIPPPHAEYGLTRPKEEHVLPVDYNRFSHDDSKVQ- 681
ERLYGVVLKLP A VP +Q Y + + ++ ++ + ++ ++
Sbjct: 552 ERLYGVVLKLPPPA-VPVTASYRQESQSNPLHY-MDQARDSPA-NASHSLYPPRENYIRG 608
Query: 682 SKMHFPHASEPLIAHSSSMDYGSNNAAAISQAGVKLTPELIATLTSLIPATKSAEVAPGS 741
+ H AS+P ++ + NNAA QAGV LTPEL+ATL S++PAT S AP
Sbjct: 609 APEHLTAASKPSVSEPLRIP---NNAAP--QAGVSLTPELLATLASILPAT-SQPAAP-- 660
Query: 742 SSARPLLAEPHVQSIEQLGNH-YNPQAQSL-------THHYASMSSTPSHSAQMLLGNNQ 793
S +P+ V S N YN +A S T H AS S + Q Q
Sbjct: 661 ESHQPMSGPSTVVSTAHQSNGLYNGEAPSQAWKRGPQTVHDASNQSFQQYGNQYTPAG-Q 719
Query: 794 L-----QESTASLSQQ---GMVYSR-PLPNFSIXXXXXXXXXXXXXXXXYQFA-APSNSQ 843
L + AS + GMV+ + S+ + SN
Sbjct: 720 LPPPPSRYPPASNNPNYTSGMVHGNMQYQSQSVNMPQLSPLPNMPHNNYSMYTQGSSNHP 779
Query: 844 KGYGMMQG--TEASTL---YGS-SVFQQPNNPTAVSNQ---VNLSQPQNVMTVSVDKVNL 894
M+Q EAS YG +QQ N +NQ +N SQ Q M DK NL
Sbjct: 780 VSQPMVQQYQPEASMPNQNYGPIPSYQQANFHGVTTNQAQNLNPSQFQAAMQPPADKANL 839
Query: 895 EHPNHVQQLQSVLSGAGQGTSDGEVDKNQRYQSTLQFAAN 934
E N +LQ ++SG GQGT+DGEVDKNQRYQSTLQFAAN
Sbjct: 840 EPQNQALRLQPMISGDGQGTTDGEVDKNQRYQSTLQFAAN 879
Score = 168 (64.2 bits), Expect = 3.1e-106, Sum P(3) = 3.1e-106
Identities = 55/177 (31%), Positives = 81/177 (45%)
Query: 313 PRSE-MFFGDQIRPSQLDMLGPNQSMQPNNFAGHLQPADIRGPSMPMRSIGAHGGHETLL 371
PR + M+ D++ P Q D + + + P+ + P S G G L
Sbjct: 272 PRIKIMYSNDELPPEQDDTSFYSGMKRSRTDMFNNDPSFVSSP----HSTGIPGSMRPL- 326
Query: 372 SGPDFKDFHSMQDPNAKNLDPNWRRPS-------PSP---GIRTSPTQGIRQPLNHAPGS 421
G + + ++ + + +PNWRRPS PSP GI SP QG R+P+ P S
Sbjct: 327 RGTNERSYNGAEYNDVVGKEPNWRRPSANGTGILPSPTGPGILPSPAQGTRRPMRSNPDS 386
Query: 422 WDVYDANQFQRDSKRLRVDGSMPIDDATFPSRKIDDHGLVLDQSYGLGSITGGPASG 478
W+ YD Q R+SKR R DGS +D F +D+ +S+G GS+ P G
Sbjct: 387 WEGYDPAQLVRESKRTRRDGS--VDG--FTPMGVDE------RSFGRGSVAARPIRG 433
Score = 144 (55.7 bits), Expect = 3.1e-106, Sum P(3) = 3.1e-106
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKD 74
+ A P +LWVG + + + DL+E F KFG ++ R AF+ + ++DA AK
Sbjct: 89 RPAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQAK- 147
Query: 75 ALQGSDFRGNPIKIEFARPAKPSKHLWVG 103
++ G G+ ++++F R P K W G
Sbjct: 148 SMNGKPMGGSFLRVDFLRSQAPKKEQWAG 176
Score = 58 (25.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 37/147 (25%), Positives = 59/147 (40%)
Query: 299 PGKDYPGSYSGTKGPRSEMFFGDQIRPSQ---LDMLGPNQSMQPNNFAGHLQPADIRGPS 355
P YP + S S M G+ SQ + L P +M NN++ + Q + S
Sbjct: 723 PPSRYPPA-SNNPNYTSGMVHGNMQYQSQSVNMPQLSPLPNMPHNNYSMYTQGSSNHPVS 781
Query: 356 MPM-RSIGAHGGHETLLSGP--DFK--DFHSMQDPNAKNLDPNWRRPS---PSPGIRTSP 407
PM + GP ++ +FH + A+NL+P+ + + P+ P
Sbjct: 782 QPMVQQYQPEASMPNQNYGPIPSYQQANFHGVTTNQAQNLNPSQFQAAMQPPADKANLEP 841
Query: 408 -TQGIR-QPL--NHAPGSWD-VYDANQ 429
Q +R QP+ G+ D D NQ
Sbjct: 842 QNQALRLQPMISGDGQGTTDGEVDKNQ 868
Score = 38 (18.4 bits), Expect = 8.4e-79, Sum P(2) = 8.4e-79
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 462 LDQSYGLGSITGGPASGAFVNVQGRNRLSPVASKVTAGGF-GRN 504
+D + S+ G P G+F+ V +P + AG + RN
Sbjct: 140 MDDALQAKSMNGKPMGGSFLRVDFLRSQAPKKEQ-WAGSYDNRN 182
>TAIR|locus:2135605 [details] [associations]
symbol:AT4G12640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 IPI:IPI00546459 RefSeq:NP_193001.2
UniGene:At.46444 ProteinModelPortal:F4JRD9 SMR:F4JRD9 PRIDE:F4JRD9
EnsemblPlants:AT4G12640.1 GeneID:826877 KEGG:ath:AT4G12640
OMA:ERNYEAG Uniprot:F4JRD9
Length = 823
Score = 376 (137.4 bits), Expect = 2.3e-66, Sum P(3) = 2.3e-66
Identities = 92/232 (39%), Positives = 126/232 (54%)
Query: 401 PGIRTSPTQGIRQPLNHAPGSWDVYDANQFQRDSKRLRVDGSMPIDDATFPSRKIDDHGL 460
PG + S + R+P + A + DA + ++ +LR + ++ R D L
Sbjct: 376 PGHQLSGIEQERRPFSRASADFSPKDAFERNYEAGQLRYNQTVE-QPLNLAIRNGDKSSL 434
Query: 461 VLDQSYGLGSITGGPASGAFVNVQGRNRLSPVASKVTAGGFGRNPIDSDFIWRGIIAKGG 520
+G G P V R R +P ++ P D+ W G IAKGG
Sbjct: 435 REPHEELMG---GYPLPSV---VPERKRYTPELNR---------PSLKDWNWEGTIAKGG 479
Query: 521 TPVCRARCVPFGKGIESELPEVVNCSARTGLDMLAKHYAEAIGFDIVFFLPDSEDDFASY 580
P+CRA+C P GK ++ LPE ++C+ARTGLDMLAKHY ++ +VFF+P S+ D Y
Sbjct: 480 NPICRAKCFPVGKVMDMMLPEFLDCTARTGLDMLAKHYYQSSKAWVVFFVPGSDADIVFY 539
Query: 581 TEFLRYLGSKNRAGVAKFDDGTTLFLVPPSDFLSKVLKVVGPERLYGVVLKL 632
EF+ YL K RA V+K DD TTLFLVPPSDF KVLKV G + GV+L+L
Sbjct: 540 DEFMHYLEEKQRAAVSKLDDTTTLFLVPPSDFSEKVLKVPGKLSISGVILRL 591
Score = 369 (135.0 bits), Expect = 2.3e-66, Sum P(3) = 2.3e-66
Identities = 85/268 (31%), Positives = 144/268 (53%)
Query: 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNING 155
PS+HLWVG + + + EL + FL+FG +E F + AFV ++ EDA A++++ G
Sbjct: 21 PSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQG 80
Query: 156 RQIGGEQLRVDFLRSQPSRREQWPNS---HDARDGPIIGRGTGFSDNHSAYKRSHPQS-- 210
+ G LR++F +++ S + HD + RG+ F S + P +
Sbjct: 81 FPLSGNPLRIEFAKAEKSSTGSRTDDIYRHDEQRSA--ARGSSFVQRDSRMRYESPDTYS 138
Query: 211 -SVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVD 269
S +R+ PS++L++G+P S+++D+ +L N FGEI ++ +P R+Y+FV+FR++
Sbjct: 139 KSKMNDRNAEPSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLM 198
Query: 270 EARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPGSYSGTKGPRSEMFFGDQIRPS--Q 327
A +AKE LQG+LF +PR+ I F+ SE P S +GP G + P
Sbjct: 199 AACKAKESLQGKLFGNPRVHICFAKSE-------PSSSGSGRGPS-----GRSLSPPYRS 246
Query: 328 LDMLGPNQS-MQPNNFAGHLQPADIRGP 354
+D LG ++ +Q N+ + +R P
Sbjct: 247 VDRLGSSEGYLQDRNYGSISRIPSVREP 274
Score = 179 (68.1 bits), Expect = 1.7e-46, Sum P(3) = 1.7e-46
Identities = 37/80 (46%), Positives = 50/80 (62%)
Query: 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQ 77
PPS +LWVGNL + +L + F +FG L+ + RS+AFV F EDA AA ++LQ
Sbjct: 20 PPSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQ 79
Query: 78 GSDFRGNPIKIEFARPAKPS 97
G GNP++IEFA+ K S
Sbjct: 80 GFPLSGNPLRIEFAKAEKSS 99
Score = 169 (64.5 bits), Expect = 1.9e-45, Sum P(3) = 1.9e-45
Identities = 65/218 (29%), Positives = 107/218 (49%)
Query: 5 PSKFNRA-YDDKEAPPSSNLWVG-NLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVY 62
P ++++ +D+ A PS L++G S DA L+ +F FG + KVT + RS+AFV
Sbjct: 134 PDTYSKSKMNDRNAEPSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQ 193
Query: 63 FKRVEDAKAAKDALQGSDFRGNP-IKIEFAR--PAKPSKHLWVGGIS-----QTVSKEEL 114
F+ + A AK++LQG F GNP + I FA+ P+ G S ++V +
Sbjct: 194 FRNLMAACKAKESLQGKLF-GNPRVHICFAKSEPSSSGSGRGPSGRSLSPPYRSVDRLGS 252
Query: 115 EEGFLK---FGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171
EG+L+ +G+I +++ + ++E LED+ + N ++ + RS+
Sbjct: 253 SEGYLQDRNYGSISRIPSVREPH--YIEDRDLEDSEGYI--FNRKRDSSSDGGPAYGRSR 308
Query: 172 PSRREQWPNS-HDARDGPIIGR-GTGFSDN-HSAYKRS 206
+ R +P H+ P G GT F DN H RS
Sbjct: 309 STHR--FPQDMHEYHGSP--GEMGTSFRDNPHRFQTRS 342
Score = 129 (50.5 bits), Expect = 2.8e-41, Sum P(3) = 2.8e-41
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 213 GRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEAR 272
GR R+ PPS+ LWVG P ++ + L + + FGE+E + P R+Y+FV F ++A
Sbjct: 15 GRGRN-PPSRHLWVGNLPHGILERE-LADRFLRFGELESLAFQPGRSYAFVNFNHDEDAF 72
Query: 273 RAKEGLQGRLFNDPRITIMFSSSE 296
A E LQG + + I F+ +E
Sbjct: 73 AAIESLQGFPLSGNPLRIEFAKAE 96
Score = 62 (26.9 bits), Expect = 2.3e-66, Sum P(3) = 2.3e-66
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 866 PNNPT--AVSNQVNLSQPQNVMTVSVDKVNLEHPNHVQQLQSVLSGAGQGTSDGEVDKNQ 923
PN P A + + S Q+ T S+ + L P + Q +Q + S Q + E + +
Sbjct: 746 PNQPERYAPEGRASFSHLQHAQTPSIPQ--LVTPQN-QNVQ-IQSSNSQQQEETEANPQK 801
Query: 924 RYQSTLQFAA 933
R Q+TLQ AA
Sbjct: 802 RLQATLQLAA 811
Score = 37 (18.1 bits), Expect = 6.2e-31, Sum P(3) = 6.2e-31
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 469 GSITGGPASGAFVNVQGRNRL-SPVASKVTAG 499
G + ASGAF +V G R+ P A +AG
Sbjct: 618 GETSYSEASGAFPDV-GNPRIPGPTAFLRSAG 648
>ZFIN|ZDB-GENE-080204-91 [details] [associations]
symbol:rbm15b "RNA binding motif protein 15B"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-080204-91 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00530000063730 EMBL:CU856621
IPI:IPI00931594 Ensembl:ENSDART00000136125 Bgee:E9QBX7
Uniprot:E9QBX7
Length = 630
Score = 259 (96.2 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 60/177 (33%), Positives = 101/177 (57%)
Query: 5 PSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SR----SFA 59
P + + DD+ A + NL++GNL + T+ +L++ F K+G +++V +R ++A
Sbjct: 255 PEEDLKPEDDQRA--TRNLFIGNLDHNITEVELRQGFDKYGIIEEVVIKRPARGQGGAYA 312
Query: 60 FVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFL 119
F+ F+ ++ A AK A+QG GNPIKI + + A P+ LWVGG+ S L F
Sbjct: 313 FLKFQNLDMAHRAKVAMQGRMINGNPIKIGYGK-ANPTTRLWVGGLGPNTSLAALAREFD 371
Query: 120 KFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSR 174
+FG+I ++K N A++ Y L+ A A + G +GG +LRVDF +++ +R
Sbjct: 372 RFGSIRTIDYVKGDNFAYIHYESLDAAQAACAQMRGFPLGGPSRRLRVDFAKAEETR 428
Score = 105 (42.0 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 22/86 (25%), Positives = 48/86 (55%)
Query: 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEA 149
+ +++L++G + +++ EL +GF K+G IE+ + G AF+++ L+ A A
Sbjct: 266 RATRNLFIGNLDHNITEVELRQGFDKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRA 325
Query: 150 LKNINGRQIGGEQLRVDFLRSQPSRR 175
+ GR I G +++ + ++ P+ R
Sbjct: 326 KVAMQGRMINGNPIKIGYGKANPTTR 351
Score = 78 (32.5 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 25/99 (25%), Positives = 45/99 (45%)
Query: 212 VGRNRDGPPSKILWVG-YPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDE 270
+G + P ++ LWVG P+ + L FG I I N++++ + S+D
Sbjct: 341 IGYGKANPTTR-LWVGGLGPNTSL--AALAREFDRFGSIRTIDYVKGDNFAYIHYESLDA 397
Query: 271 ARRAKEGLQGRLFNDP--RITIMFSSSELAPGKDYPGSY 307
A+ A ++G P R+ + F+ +E + YP Y
Sbjct: 398 AQAACAQMRGFPLGGPSRRLRVDFAKAEET--RAYPQQY 434
Score = 58 (25.5 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 23 LWVGNLSADTTDADLKE-LFGKFGALDKVTTYSSRS-----FAFVYFKRVEDAKAAKDAL 76
L + NL + +D +++ LF +F V+ S + A+V F+ E A+ A+ A
Sbjct: 105 LLISNLGSQLSDEHVEDGLFHEFKKFGDVSVKLSHTPELGRIAYVNFRHTEHAREARHAK 164
Query: 77 QGSDFRGNPIKIE 89
P+K+E
Sbjct: 165 TRLVLYDRPLKVE 177
Score = 53 (23.7 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 21/75 (28%), Positives = 30/75 (40%)
Query: 621 GPERLYGVVLKLPQQAMVPPQTVDKQNIPPPHAEYGLTRPKEEHVLPVDYNRFSHDDSKV 680
GP R V ++ PQ +PPPH Y L LP Y R + ++
Sbjct: 412 GPSRRLRVDFAKAEETRAYPQQYQPPLLPPPH--YDL--------LPESYARHRSLEREL 461
Query: 681 QSKMHFPHASEPLIA 695
+++ P S PL A
Sbjct: 462 RARARSP--SHPLFA 474
>UNIPROTKB|E1C9H9 [details] [associations]
symbol:MANF "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
InterPro:IPR010912 OMA:KRDSERN GeneTree:ENSGT00530000063730
EMBL:AADN02056521 IPI:IPI00572917 ProteinModelPortal:E1C9H9
Ensembl:ENSGALT00000003739 Uniprot:E1C9H9
Length = 557
Score = 244 (91.0 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 67/220 (30%), Positives = 117/220 (53%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SR----SFAFVYFKRVE 67
DD+ A + NL++GNL + ++ +L+ F K+G +++V +R ++AF+ F+ ++
Sbjct: 4 DDQRA--TRNLFIGNLDHNVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLD 61
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
A AK A+ G NPIKI + + A P+ LWVGG+ + S L F +FG+I
Sbjct: 62 MAHRAKVAMSGRVVGRNPIKIGYGK-ANPTTRLWVGGLGPSTSLAALAREFDRFGSIRTI 120
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQ--LRVDFLRSQPSRREQWPNSHDAR 185
++K + A+++Y L+ A A + G +GG + LRVDF +++ +R +P +
Sbjct: 121 DYVKGDSFAYIQYESLDAAQAACAQMRGFPLGGPERRLRVDFAKAEETR---YPQQYQPA 177
Query: 186 DGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILW 225
P+ +D +S + RS Q R RD P +L+
Sbjct: 178 PLPV--HYELLADGYSRH-RSLEQDL--RVRDRTPPHLLY 212
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 239 (89.2 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 77/282 (27%), Positives = 135/282 (47%)
Query: 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDK---VTTYSSRSFAFVYFKRVEDAKAA 72
E+ P + L+VGNL + ++ L LF G + + + +AF+ + + A A
Sbjct: 3 ESQPKT-LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTA 61
Query: 73 KDALQGSDFRGNPIKIEFAR-PAKPSK-------HLWVGGISQTVSKEELEEGFLKFGNI 124
A+ F IK+ +A P K H++VG +S + E L E F FG I
Sbjct: 62 LTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEI 121
Query: 125 EDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGGEQLRVDF-LRSQPSRREQ 177
+ + ++D +T AFV + + +A A++ +NG+ IG +R ++ R P RE
Sbjct: 122 SNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPRE- 180
Query: 178 WPNSHDARDGPIIGRGTGFSDNHSAYKRS--HPQSSVGRNRDGPPSKILWVG-YPPSVQM 234
P+ + G + G G G N S K S H V N+ P + ++ G +PP+V
Sbjct: 181 -PSKGGGQGGGM-GGGPG---NGSGVKGSQRHTFEEV-YNQSSPTNTTVYCGGFPPNVIS 234
Query: 235 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKE 276
D+ ++H + FG I+ ++ + + +SF++F + + A A E
Sbjct: 235 DD-LMHKHFVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIE 275
Score = 48 (22.0 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 706 NAAAISQAGVKLTPELIATLTSLIPATKSAEVAPGSSSARPLLAEPHVQSIEQLGNHYNP 765
NAA + AG+ P + T + AT +A PG +A + + +Q+G Y P
Sbjct: 324 NAAVAAGAGM---PGQMMTQQQIAAATGAA--IPGQMMTPQQIAAQYPYAYQQMGYWYPP 378
Query: 766 QAQSLT 771
T
Sbjct: 379 ATYPTT 384
>ZFIN|ZDB-GENE-041008-192 [details] [associations]
symbol:rbm15 "RNA binding motif protein 15"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041008-192 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744
PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
OMA:DYLVMIV EMBL:BX324132 IPI:IPI00902274
Ensembl:ENSDART00000111617 Bgee:F1RCY7 Uniprot:F1RCY7
Length = 855
Score = 246 (91.7 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 94/336 (27%), Positives = 154/336 (45%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKV-----TTYSSRSFAFVYFKRVE 67
DD+ A + L++GNL T+ DL+ F +FG + +V T S ++ F+ F+ ++
Sbjct: 303 DDQRA--NRTLFLGNLDITVTENDLRRAFERFGTITEVDIKRPTRGQSSTYGFLKFENLD 360
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
A AK ++ G NPIKI + + A P+ LWVGG+ V L F +FG I
Sbjct: 361 MAHRAKISMSGKVVGRNPIKIGYGK-ATPTTRLWVGGLGPWVPLTALAREFDRFGTIRTI 419
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQWPNSHDAR 185
+ K A+++Y L+ A A ++ G +GG +LRVDF ++ ++Q+ +
Sbjct: 420 DYRKGDTWAYIQYESLDAAQAACTHMRGFPLGGPDRRLRVDFADTEHRYQQQFLQPLPLQ 479
Query: 186 DGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPP----SKILWVGYP-PSVQMDEQMLH 240
I+ S R+ P++ R R PP + L+ G P+ + E++
Sbjct: 480 HYEIMAE--------SFVHRATPEAIRVRERTPPPLHFRERELYAGAEWPAPTIRERVRT 531
Query: 241 NAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF--SSSELA 298
A F +E ++ R +E R + A++ RL D R SSSE A
Sbjct: 532 PA---FEPLEHLERERRREAWSLE-RELPGREAARKR---RLMEDGRHLECSPDSSSEWA 584
Query: 299 PGKDYPGSYSGTKGPRS-EMFFGDQIRPSQLDMLGP 333
+ P S G+ G S + F D RP++ D + P
Sbjct: 585 ARRRRPPSLEGSPGGSSRDGRFSDSERPARADRVSP 620
Score = 46 (21.3 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 361 IGAHGGHETLLSGPDFKDFHSMQDPNAKNLDP-----NWRRPSPSPGIRTSPTQGIRQPL 415
+ GG+ LL+ P + S DP A P ++ + + G+ + P G R
Sbjct: 757 VAGPGGYAVLLAVPGSSEETSSSDPAASTQRPLRNLVSYLKQKQAAGVISLPVGGSRDKD 816
Query: 416 N 416
N
Sbjct: 817 N 817
Score = 45 (20.9 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 608 PPSDFLSKVLKVVGPERLYGVVLKLP 633
P D +S+ +KV GP Y V+L +P
Sbjct: 746 PKIDEVSRRIKVAGPGG-YAVLLAVP 770
Score = 38 (18.4 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 399 PSPGIRTSPTQGIRQPLNHAPG 420
P+ R SP + R L+ PG
Sbjct: 612 PARADRVSPARESRSSLDRVPG 633
>UNIPROTKB|Q8NDT2 [details] [associations]
symbol:RBM15B "Putative RNA-binding protein 15B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0019048 "virus-host
interaction" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006913
"nucleocytoplasmic transport" evidence=IDA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0019048 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 InterPro:IPR012921
Pfam:PF07744 GO:GO:0000381 eggNOG:NOG250829 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
EMBL:AC092037 InterPro:IPR010912 EMBL:AL831838 EMBL:BC001367
EMBL:AY545557 IPI:IPI00175136 RefSeq:NP_037418.3 UniGene:Hs.118738
UniGene:Hs.731737 ProteinModelPortal:Q8NDT2 SMR:Q8NDT2
IntAct:Q8NDT2 STRING:Q8NDT2 PhosphoSite:Q8NDT2 DMDM:229463030
PaxDb:Q8NDT2 PeptideAtlas:Q8NDT2 PRIDE:Q8NDT2 DNASU:29890
Ensembl:ENST00000323686 Ensembl:ENST00000563281 GeneID:29890
KEGG:hsa:29890 UCSC:uc003dbd.3 CTD:29890 GeneCards:GC03P051428
HGNC:HGNC:24303 HPA:HPA036645 MIM:612602 neXtProt:NX_Q8NDT2
PharmGKB:PA134870079 HOGENOM:HOG000006547 HOVERGEN:HBG058366
InParanoid:Q8NDT2 KO:K13190 OMA:KRDSERN OrthoDB:EOG42RD6Z
GenomeRNAi:29890 NextBio:52441 ArrayExpress:Q8NDT2 Bgee:Q8NDT2
CleanEx:HS_RBM15B Genevestigator:Q8NDT2 GermOnline:ENSG00000179837
Uniprot:Q8NDT2
Length = 890
Score = 234 (87.4 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 56/172 (32%), Positives = 95/172 (55%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SR----SFAFVYFKRVE 67
DD+ A + NL++GNL ++ +L+ F K+G +++V +R ++AF+ F+ ++
Sbjct: 331 DDQRA--TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLD 388
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
A AK A+ G NPIKI + + A P+ LWVGG+ S L F +FG+I
Sbjct: 389 MAHRAKVAMSGRVIGRNPIKIGYGK-ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI 447
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQ 177
+K + A+++Y L+ A A + G +GG +LRVDF +++ +R Q
Sbjct: 448 DHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRYPQ 499
>RGD|1305937 [details] [associations]
symbol:Rbm15b "RNA binding motif protein 15B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA;ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006913
"nucleocytoplasmic transport" evidence=ISO] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305937 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473954 InterPro:IPR012921
Pfam:PF07744 GO:GO:0000381 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
OrthoDB:EOG42RD6Z GeneTree:ENSGT00530000063730 IPI:IPI00768794
Ensembl:ENSRNOT00000018995 UCSC:RGD:1305937 Uniprot:D3ZHD6
Length = 564
Score = 234 (87.4 bits), Expect = 5.7e-15, Sum P(3) = 5.7e-15
Identities = 56/172 (32%), Positives = 95/172 (55%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SR----SFAFVYFKRVE 67
DD+ A + NL++GNL ++ +L+ F K+G +++V +R ++AF+ F+ ++
Sbjct: 4 DDQRA--TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLD 61
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
A AK A+ G NPIKI + + A P+ LWVGG+ S L F +FG+I
Sbjct: 62 MAHRAKVAMSGRVIGRNPIKIGYGK-ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI 120
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQ 177
+K + A+++Y L+ A A + G +GG +LRVDF +++ +R Q
Sbjct: 121 DHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRYPQ 172
Score = 41 (19.5 bits), Expect = 5.7e-15, Sum P(3) = 5.7e-15
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 586 YLGSKNRAGV-------AKFDDGT-TLFLVPPSDFLSKVLK 618
YL K AGV +K D T L+ PP DF + L+
Sbjct: 501 YLKQKQAAGVISLPVGGSKGRDSTGMLYAFPPCDFSQQYLQ 541
Score = 39 (18.8 bits), Expect = 5.7e-15, Sum P(3) = 5.7e-15
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 159 GGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSH 207
GG+Q R+ R++ +S ++ G + + HSA +RSH
Sbjct: 294 GGQQSERGSDRTPERSRKENHSSEGTKES---GSNSLSNSRHSAEERSH 339
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 221 (82.9 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 72/273 (26%), Positives = 123/273 (45%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYS---SRSFAFVYFKRVEDAKAAKDALQGS 79
L+V NL TD L LF + GA+ K + +AFV F A A + G
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSHNGR 101
Query: 80 DFRGNPIKIEFA-RPAKP----SK-------HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
+ + + +A P +P SK H++VG + + +L E F+KFG + +
Sbjct: 102 ELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEA 161
Query: 128 KFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNS 181
K ++D NT FV Y R EDA A+ +NG +G +R ++ +P +
Sbjct: 162 KIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDEDGERGGD 221
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHN 241
R G G G G H+ ++++ + N+ + ++VG ++ DE +
Sbjct: 222 RGDRRG---GGGGGRDRYHNQSEKTYDEIF---NQAAADNTSVYVGNIANLGEDE--IRR 273
Query: 242 AMILFGEIERIKSYPSRNYSFVEFRSVDEARRA 274
A FG I ++++ + Y+FV+F + + A RA
Sbjct: 274 AFDRFGPINEVRTFKIQGYAFVKFETKESAARA 306
Score = 111 (44.1 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 36/135 (26%), Positives = 64/135 (47%)
Query: 90 FARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEA 149
F + A + ++VG I+ + ++E+ F +FG I + + K AFV++ E AA A
Sbjct: 248 FNQAAADNTSVYVGNIAN-LGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARA 306
Query: 150 LKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGR-GTGFSDNHSAYKRSHP 208
+ +N IGG+ +R + +S S + P+ + G G G G+ ++ P
Sbjct: 307 IVQMNNADIGGQIVRCSWGKSGDSGK---PSERGSGGGGGSGNYGYGYGNSGGGGGSGGP 363
Query: 209 QSSV--GRNRDGPPS 221
+S N+ PPS
Sbjct: 364 GNSQFSNFNQRPPPS 378
Score = 85 (35.0 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 27/101 (26%), Positives = 49/101 (48%)
Query: 13 DDKEAPPSS---NLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYF 63
+++ P +S +++VG+L ++ L+E F KFG + + T + + FV +
Sbjct: 121 ENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSY 180
Query: 64 KRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGG 104
R EDA+ A D + G+ I+ +A KP + GG
Sbjct: 181 PRREDAERAIDEMNGAWLGRRTIRTNWAT-RKPDEDGERGG 220
Score = 45 (20.9 bits), Expect = 7.7e-15, Sum P(2) = 7.7e-15
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 466 YGLGSITGGPASGAFVNVQGRN---RLSPVASKVTAGGFG 502
YG G+ GG SG N Q N R P + + GG G
Sbjct: 349 YGYGNSGGGGGSGGPGNSQFSNFNQRPPPSGNGGSGGGSG 388
>UNIPROTKB|J9PBG8 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 KO:K13190
GeneTree:ENSGT00530000063730 CTD:64783 EMBL:AAEX03004718
RefSeq:XP_537035.1 ProteinModelPortal:J9PBG8
Ensembl:ENSCAFT00000043159 GeneID:479909 KEGG:cfa:479909
Uniprot:J9PBG8
Length = 969
Score = 226 (84.6 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 70/232 (30%), Positives = 112/232 (48%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SR----SFAFVYFKRVE 67
DD+ A + L++GNL T++DL+ F +FG + +V SR ++ F+ F+ ++
Sbjct: 367 DDQRA--NRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLD 424
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
+ AK A+ G NPIKI + + A P+ LWVGG+ V L F +FG I
Sbjct: 425 MSHRAKLAMSGKIIIRNPIKIGYGK-ATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTI 483
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQW----PNS 181
+ K + A+++Y L+ A A ++ G +GG +LRVDF ++ ++Q+ P +
Sbjct: 484 DYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLT 543
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQ 233
H G A R+ P R+RD P WV PP V+
Sbjct: 544 HYELVTDAFGHRAP-DPLRGARDRTPPLLYRDRDRDLYPDSD-WVPPPPPVR 593
>UNIPROTKB|F1S620 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:CU915404 Ensembl:ENSSSCT00000007457 Uniprot:F1S620
Length = 971
Score = 226 (84.6 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 70/232 (30%), Positives = 112/232 (48%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SR----SFAFVYFKRVE 67
DD+ A + L++GNL T++DL+ F +FG + +V SR ++ F+ F+ ++
Sbjct: 369 DDQRA--NRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLD 426
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
+ AK A+ G NPIKI + + A P+ LWVGG+ V L F +FG I
Sbjct: 427 MSHRAKLAMSGKIIIRNPIKIGYGK-ATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTI 485
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQW----PNS 181
+ K + A+++Y L+ A A ++ G +GG +LRVDF ++ ++Q+ P +
Sbjct: 486 DYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLT 545
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQ 233
H G A R+ P R+RD P WV PP V+
Sbjct: 546 HYELVTDAFGHRAP-DPLRGARDRTPPLLYRDRDRDLYPDSD-WVPPPPPVR 595
>UNIPROTKB|E2R9C6 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060674 "placenta blood vessel development"
evidence=IEA] [GO:0060412 "ventricular septum morphogenesis"
evidence=IEA] [GO:0048536 "spleen development" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0007221 "positive regulation of transcription of
Notch receptor target" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001569 "patterning of blood vessels"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000122 GO:GO:0001569
GO:GO:0048536 InterPro:IPR012921 Pfam:PF07744 GO:GO:0045638
GO:GO:0060412 GO:GO:0060674 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GO:GO:0007221 GeneTree:ENSGT00530000063730 OMA:DYLVMIV
EMBL:AAEX03004718 ProteinModelPortal:E2R9C6
Ensembl:ENSCAFT00000031467 Uniprot:E2R9C6
Length = 977
Score = 226 (84.6 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 70/232 (30%), Positives = 112/232 (48%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SR----SFAFVYFKRVE 67
DD+ A + L++GNL T++DL+ F +FG + +V SR ++ F+ F+ ++
Sbjct: 367 DDQRA--NRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLD 424
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
+ AK A+ G NPIKI + + A P+ LWVGG+ V L F +FG I
Sbjct: 425 MSHRAKLAMSGKIIIRNPIKIGYGK-ATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTI 483
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQW----PNS 181
+ K + A+++Y L+ A A ++ G +GG +LRVDF ++ ++Q+ P +
Sbjct: 484 DYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLT 543
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQ 233
H G A R+ P R+RD P WV PP V+
Sbjct: 544 HYELVTDAFGHRAP-DPLRGARDRTPPLLYRDRDRDLYPDSD-WVPPPPPVR 593
>UNIPROTKB|Q96T37 [details] [associations]
symbol:RBM15 "Putative RNA-binding protein 15" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0019048 "virus-host
interaction" evidence=IEA] [GO:0001569 "patterning of blood
vessels" evidence=IEA] [GO:0007221 "positive regulation of
transcription of Notch receptor target" evidence=IEA] [GO:0045638
"negative regulation of myeloid cell differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0060412
"ventricular septum morphogenesis" evidence=IEA] [GO:0060674
"placenta blood vessel development" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0019048 GO:GO:0000166
EMBL:CH471122 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0001569
GO:GO:0048536 InterPro:IPR012921 Pfam:PF07744 GO:GO:0045638
GO:GO:0060412 GO:GO:0060674 eggNOG:NOG250829 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
InterPro:IPR010912 EMBL:AF364035 EMBL:AJ303089 EMBL:AJ303090
EMBL:AL355488 GO:GO:0007221 HOVERGEN:HBG058366 KO:K13190
EMBL:AF368062 EMBL:AF368063 EMBL:AF368064 EMBL:AJ297259
EMBL:AK022541 EMBL:AK025596 EMBL:BC006397 EMBL:BC062316
EMBL:BC098140 EMBL:BC103507 IPI:IPI00102752 IPI:IPI00220716
IPI:IPI00220717 RefSeq:NP_001188474.1 RefSeq:NP_073605.4
UniGene:Hs.435947 UniGene:Hs.708172 ProteinModelPortal:Q96T37
SMR:Q96T37 IntAct:Q96T37 STRING:Q96T37 PhosphoSite:Q96T37
DMDM:32363506 PaxDb:Q96T37 PRIDE:Q96T37 DNASU:64783
Ensembl:ENST00000369784 GeneID:64783 KEGG:hsa:64783 UCSC:uc001dzl.1
UCSC:uc001dzm.1 UCSC:uc021orn.1 CTD:64783 GeneCards:GC01P110876
HGNC:HGNC:14959 HPA:CAB015201 HPA:HPA019824 MIM:606077
neXtProt:NX_Q96T37 PharmGKB:PA34264 InParanoid:Q96T37 OMA:DYLVMIV
OrthoDB:EOG41ZF99 PhylomeDB:Q96T37 ChiTaRS:RBM15 GenomeRNAi:64783
NextBio:66822 Bgee:Q96T37 Genevestigator:Q96T37 Uniprot:Q96T37
Length = 977
Score = 226 (84.6 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 70/232 (30%), Positives = 112/232 (48%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SR----SFAFVYFKRVE 67
DD+ A + L++GNL T++DL+ F +FG + +V SR ++ F+ F+ ++
Sbjct: 368 DDQRA--NRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLD 425
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
+ AK A+ G NPIKI + + A P+ LWVGG+ V L F +FG I
Sbjct: 426 MSHRAKLAMSGKIIIRNPIKIGYGK-ATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTI 484
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQW----PNS 181
+ K + A+++Y L+ A A ++ G +GG +LRVDF ++ ++Q+ P +
Sbjct: 485 DYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLT 544
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQ 233
H G A R+ P R+RD P WV PP V+
Sbjct: 545 HYELVTDAFGHRAP-DPLRGARDRTPPLLYRDRDRDLYPDSD-WVPPPPPVR 594
>UNIPROTKB|F1S619 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060674 "placenta blood vessel development"
evidence=IEA] [GO:0060412 "ventricular septum morphogenesis"
evidence=IEA] [GO:0048536 "spleen development" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0007221 "positive regulation of transcription of
Notch receptor target" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001569 "patterning of blood vessels"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000122 GO:GO:0001569
GO:GO:0048536 InterPro:IPR012921 Pfam:PF07744 GO:GO:0045638
GO:GO:0060412 GO:GO:0060674 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GO:GO:0007221 GeneTree:ENSGT00530000063730 OMA:DYLVMIV
EMBL:CU915404 Ensembl:ENSSSCT00000007458 Uniprot:F1S619
Length = 979
Score = 226 (84.6 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 70/232 (30%), Positives = 112/232 (48%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SR----SFAFVYFKRVE 67
DD+ A + L++GNL T++DL+ F +FG + +V SR ++ F+ F+ ++
Sbjct: 369 DDQRA--NRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLD 426
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
+ AK A+ G NPIKI + + A P+ LWVGG+ V L F +FG I
Sbjct: 427 MSHRAKLAMSGKIIIRNPIKIGYGK-ATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTI 485
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQW----PNS 181
+ K + A+++Y L+ A A ++ G +GG +LRVDF ++ ++Q+ P +
Sbjct: 486 DYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLT 545
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQ 233
H G A R+ P R+RD P WV PP V+
Sbjct: 546 HYELVTDAFGHRAP-DPLRGARDRTPPLLYRDRDRDLYPDSD-WVPPPPPVR 595
>UNIPROTKB|E1BFX6 [details] [associations]
symbol:RBM15 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060674 "placenta blood vessel development"
evidence=IEA] [GO:0060412 "ventricular septum morphogenesis"
evidence=IEA] [GO:0048536 "spleen development" evidence=IEA]
[GO:0045638 "negative regulation of myeloid cell differentiation"
evidence=IEA] [GO:0007221 "positive regulation of transcription of
Notch receptor target" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001569 "patterning of blood vessels"
evidence=IEA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000122 GO:GO:0001569
GO:GO:0048536 InterPro:IPR012921 Pfam:PF07744 GO:GO:0045638
GO:GO:0060412 GO:GO:0060674 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GO:GO:0007221 GeneTree:ENSGT00530000063730 OMA:DYLVMIV
EMBL:DAAA02007553 IPI:IPI00700723 Ensembl:ENSBTAT00000052066
Uniprot:E1BFX6
Length = 914
Score = 225 (84.3 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 70/232 (30%), Positives = 112/232 (48%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SR----SFAFVYFKRVE 67
DD+ A + L++GNL T++DL+ F +FG + +V SR ++ F+ F+ ++
Sbjct: 325 DDQRA--NRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLD 382
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
+ AK A+ G NPIKI + + A P+ LWVGG+ V L F +FG I
Sbjct: 383 MSHRAKLAMSGKIIIRNPIKIGYGK-ATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTI 441
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQW----PNS 181
+ K + A+++Y L+ A A ++ G +GG +LRVDF ++ ++Q+ P +
Sbjct: 442 DYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQYLQPLPLT 501
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQ 233
H G A R+ P R+RD P WV PP V+
Sbjct: 502 HYELVTDAFGHRAP-DPLRGARDRTPPILYRDRDRDLYPDSD-WVPPPPPVR 551
>MGI|MGI:1923598 [details] [associations]
symbol:Rbm15b "RNA binding motif protein 15B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923598 GO:GO:0005654 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381
eggNOG:NOG250829 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912 CTD:29890
HOGENOM:HOG000006547 HOVERGEN:HBG058366 KO:K13190 OMA:KRDSERN
OrthoDB:EOG42RD6Z EMBL:AC147636 EMBL:BC052180 EMBL:AK075777
IPI:IPI00278942 RefSeq:NP_780611.3 UniGene:Mm.431589
UniGene:Mm.440089 PDB:1WHY PDBsum:1WHY ProteinModelPortal:Q6PHZ5
SMR:Q6PHZ5 PhosphoSite:Q6PHZ5 PaxDb:Q6PHZ5 PRIDE:Q6PHZ5
Ensembl:ENSMUST00000055843 GeneID:109095 KEGG:mmu:109095
UCSC:uc012gzz.1 GeneTree:ENSGT00530000063730 InParanoid:Q6PHZ5
EvolutionaryTrace:Q6PHZ5 NextBio:361644 Bgee:Q6PHZ5
CleanEx:MM_RBM15B Genevestigator:Q6PHZ5
GermOnline:ENSMUSG00000045365 Uniprot:Q6PHZ5
Length = 887
Score = 234 (87.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 56/172 (32%), Positives = 95/172 (55%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SR----SFAFVYFKRVE 67
DD+ A + NL++GNL ++ +L+ F K+G +++V +R ++AF+ F+ ++
Sbjct: 327 DDQRA--TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLD 384
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
A AK A+ G NPIKI + + A P+ LWVGG+ S L F +FG+I
Sbjct: 385 MAHRAKVAMSGRVIGRNPIKIGYGK-ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI 443
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQ 177
+K + A+++Y L+ A A + G +GG +LRVDF +++ +R Q
Sbjct: 444 DHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRYPQ 495
Score = 41 (19.5 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 586 YLGSKNRAGV-------AKFDDGT-TLFLVPPSDFLSKVLK 618
YL K AGV +K D T L+ PP DF + L+
Sbjct: 824 YLKQKQAAGVISLPVGGSKGRDNTGMLYAFPPCDFSQQYLQ 864
>UNIPROTKB|F1SIZ8 [details] [associations]
symbol:RBM15B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
InterPro:IPR010912 KO:K13190 OMA:KRDSERN
GeneTree:ENSGT00530000063730 EMBL:CU633548 RefSeq:XP_003132286.1
Ensembl:ENSSSCT00000012500 GeneID:100519215 KEGG:ssc:100519215
Uniprot:F1SIZ8
Length = 893
Score = 234 (87.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 56/172 (32%), Positives = 95/172 (55%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SR----SFAFVYFKRVE 67
DD+ A + NL++GNL ++ +L+ F K+G +++V +R ++AF+ F+ ++
Sbjct: 334 DDQRA--TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLD 391
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
A AK A+ G NPIKI + + A P+ LWVGG+ S L F +FG+I
Sbjct: 392 MAHRAKVAMSGRVIGRNPIKIGYGK-ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI 450
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQ 177
+K + A+++Y L+ A A + G +GG +LRVDF +++ +R Q
Sbjct: 451 DHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRYPQ 502
Score = 41 (19.5 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 586 YLGSKNRAGV-------AKFDDGT-TLFLVPPSDFLSKVLK 618
YL K AGV +K D T L+ PP DF + L+
Sbjct: 830 YLKQKQAAGVISLPVGGSKGRDSTGMLYAFPPCDFSQQYLQ 870
>UNIPROTKB|E2RPV8 [details] [associations]
symbol:RBM15B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744 GO:GO:0000381
PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 KO:K13190 OMA:KRDSERN
GeneTree:ENSGT00530000063730 EMBL:AAEX03012206
RefSeq:XP_003639807.1 Ensembl:ENSCAFT00000016286 GeneID:100855610
KEGG:cfa:100855610 Uniprot:E2RPV8
Length = 898
Score = 234 (87.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 56/172 (32%), Positives = 95/172 (55%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SR----SFAFVYFKRVE 67
DD+ A + NL++GNL ++ +L+ F K+G +++V +R ++AF+ F+ ++
Sbjct: 340 DDQRA--TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLD 397
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
A AK A+ G NPIKI + + A P+ LWVGG+ S L F +FG+I
Sbjct: 398 MAHRAKVAMSGRVIGRNPIKIGYGK-ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI 456
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQ 177
+K + A+++Y L+ A A + G +GG +LRVDF +++ +R Q
Sbjct: 457 DHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRYPQ 508
Score = 41 (19.5 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 586 YLGSKNRAGV-------AKFDDGT-TLFLVPPSDFLSKVLK 618
YL K AGV +K D T L+ PP DF + L+
Sbjct: 835 YLKQKQAAGVISLPVGGSKGRDSTGMLYAFPPCDFSQQYLQ 875
>UNIPROTKB|F6RM04 [details] [associations]
symbol:RBM15B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:DAAA02054396 IPI:IPI00705216 Ensembl:ENSBTAT00000008515
OMA:ISHELDD Uniprot:F6RM04
Length = 940
Score = 230 (86.0 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 55/172 (31%), Positives = 94/172 (54%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SR----SFAFVYFKRVE 67
DD+ A + NL++GNL ++ +L+ F K+G +++V +R ++AF+ F+ ++
Sbjct: 384 DDQRA--TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLD 441
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
A AK + G NPIKI + + A P+ LWVGG+ S L F +FG+I
Sbjct: 442 MAHRAKVGMSGRVIGRNPIKIGYGK-ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI 500
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQ 177
+K + A+++Y L+ A A + G +GG +LRVDF +++ +R Q
Sbjct: 501 DHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRYPQ 552
Score = 41 (19.5 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 586 YLGSKNRAGV-------AKFDDGT-TLFLVPPSDFLSKVLK 618
YL K AGV +K D T L+ PP DF + L+
Sbjct: 880 YLKQKQAAGVISLPVGGSKGRDSTGMLYAFPPCDFSQQYLQ 920
>FB|FBgn0027548 [details] [associations]
symbol:nito "spenito" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0048749 "compound eye
development" evidence=IMP] [GO:0030177 "positive regulation of Wnt
receptor signaling pathway" evidence=IGI] [GO:0035222 "wing disc
pattern formation" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE013599 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 HSSP:P19339 GO:GO:0071011 GO:GO:0000398
InterPro:IPR012921 Pfam:PF07744 eggNOG:NOG250829 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939
InterPro:IPR010912 KO:K13190 GeneTree:ENSGT00530000063730
EMBL:AF145664 RefSeq:NP_610339.1 RefSeq:NP_724633.1 UniGene:Dm.2130
SMR:Q7KMJ6 IntAct:Q7KMJ6 STRING:Q7KMJ6 EnsemblMetazoa:FBtr0088857
EnsemblMetazoa:FBtr0088858 GeneID:35756 KEGG:dme:Dmel_CG2910
UCSC:CG2910-RA CTD:35756 FlyBase:FBgn0027548 InParanoid:Q7KMJ6
OMA:CKVELSG OrthoDB:EOG4W3R31 GenomeRNAi:35756 NextBio:795063
Uniprot:Q7KMJ6
Length = 793
Score = 206 (77.6 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 48/170 (28%), Positives = 85/170 (50%)
Query: 5 PSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY-----SSRSFA 59
P+ + + + + L+ GNL D +L+ +FGK+G +D + + +FA
Sbjct: 298 PNYLHHVQPEDDPLSTRTLFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFA 357
Query: 60 FVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFL 119
FV ++ ++ A AK L G KI + + P+ +W+GG+ S +LE F
Sbjct: 358 FVRYQNLDMAHRAKIELSGQYIGKFQCKIGYGK-VTPATRMWIGGLGAWTSVTQLEREFD 416
Query: 120 KFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQ--LRVDF 167
+FG I+ ++ K A+++Y +E A A+K + G +GG + LR DF
Sbjct: 417 RFGAIKKIEYQKGEPYAYIQYETVEAATAAVKEMRGFPLGGPERRLRTDF 466
Score = 96 (38.9 bits), Expect = 8.2e-06, Sum P(4) = 8.2e-06
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNT-AFVEYSRLEDAAEALK 151
++ L+ G + T++ +EL F K+G ++D + GN AFV Y L+ A A
Sbjct: 313 TRTLFAGNLEVTIADDELRRIFGKYGVVDDIDIKRPPPGTGNAFAFVRYQNLDMAHRAKI 372
Query: 152 NINGRQIGGEQLRVDFLRSQPSRREQW 178
++G+ IG Q ++ + + P+ R W
Sbjct: 373 ELSGQYIGKFQCKIGYGKVTPATR-MW 398
Score = 89 (36.4 bits), Expect = 8.2e-06, Sum P(4) = 8.2e-06
Identities = 52/228 (22%), Positives = 86/228 (37%)
Query: 209 QSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSV 268
Q +G + P ++ +W+G + Q L FG I++I+ Y+++++ +V
Sbjct: 383 QCKIGYGKVTPATR-MWIGGLGAWTSVTQ-LEREFDRFGAIKKIEYQKGEPYAYIQYETV 440
Query: 269 DEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPGSYSGTKGPRSEMFFGDQIRPSQL 328
+ A A + ++G P + +EL PG + +K P E + RP
Sbjct: 441 EAATAAVKEMRGFPLGGPERRLRTDFAEL-PGATPAAPFKSSKPPYDESAL-EYRRPEYD 498
Query: 329 DMLGPNQSMQPNNFAGHLQP-ADIRGPS-MPMRSIGAHGGHETLLSGPDFKDF--HSMQD 384
+ + P P RG R G + H + P S
Sbjct: 499 PYYEESAAYAPRGGYSPYPPRGGYRGRGGYRGRGRGMYHYHNDVHRPPHPGSLAGSSSSV 558
Query: 385 PNAKNLDPNWRRP---SPSPGIRTSPTQ-GI-----RQPLNHA--PGS 421
P ++ WRRP S G R+S + G+ R PL A PGS
Sbjct: 559 PPPGGVEDEWRRPPGESYDRGARSSSREPGVERSRSRSPLKRARSPGS 606
Score = 53 (23.7 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 20/53 (37%), Positives = 26/53 (49%)
Query: 575 DDFASYTEFLR----YLGSKNRAGVA----KFDDGT-TLFLVPPSDFLSKVLK 618
DD + T LR YL K AGV K + T L+ PP DF +++LK
Sbjct: 715 DDASVQTRPLRNLVSYLKQKEAAGVISLLNKETEATGVLYAFPPCDFSTELLK 767
Score = 49 (22.3 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 191 GRGTGFSDNHS-AYKRSHPQSSVGRNRDGPP 220
GRG G H+ ++ HP S G + PP
Sbjct: 530 GRGRGMYHYHNDVHRPPHPGSLAGSSSSVPP 560
Score = 42 (19.8 bits), Expect = 8.2e-06, Sum P(4) = 8.2e-06
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 31 DTTDADLKELFGKFGALDKVTTYS-SRSFAFVYFKRVEDAKAAK 73
D + L + KFG + A+V F+ EDA+ AK
Sbjct: 113 DFIEETLYREYKKFGDFSVRLAHDLDERVAYVCFRTPEDAREAK 156
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 185 (70.2 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 58/191 (30%), Positives = 97/191 (50%)
Query: 4 PPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSR 56
P N A DD + +NL V L + T + K LFG G + DK+T S
Sbjct: 25 PVISTNGATDDSK----TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITG-QSL 79
Query: 57 SFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEE 113
+ FV + DA A + L G + IK+ +ARP+ S +L+V G+ +T+S+++
Sbjct: 80 GYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKD 139
Query: 114 LEEGFLKFGNIEDFKFLKDGNTA-------FVEYSRLEDAAEALKNINGRQ-IGG-EQLR 164
+E+ F ++G I + L D TA F+ + + +A EA+K +NG++ +G E +
Sbjct: 140 MEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPIT 199
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 200 VKFANN-PSQK 209
Score = 63 (27.2 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 210 SSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYS 261
S G N GP ++V Y S + DE +L FG + +K + + +
Sbjct: 262 SLAGVNLTGPTGAGWCIFV-YNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFG 320
Query: 262 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
FV + DEA A L G D + + F +S+
Sbjct: 321 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSK 355
>UNIPROTKB|F1NRZ4 [details] [associations]
symbol:LOC100859595 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0001569 "patterning of blood vessels"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007221
"positive regulation of transcription of Notch receptor target"
evidence=IEA] [GO:0045638 "negative regulation of myeloid cell
differentiation" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0060412 "ventricular septum morphogenesis"
evidence=IEA] [GO:0060674 "placenta blood vessel development"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000122 InterPro:IPR012921
Pfam:PF07744 GO:GO:0045638 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GO:GO:0007221 GeneTree:ENSGT00530000063730 OMA:DYLVMIV
EMBL:AADN02044860 IPI:IPI00578434 Ensembl:ENSGALT00000000546
Uniprot:F1NRZ4
Length = 957
Score = 220 (82.5 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 69/239 (28%), Positives = 113/239 (47%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY-----SSRSFAFVYFKRVE 67
DD+ A + L++GNL ++ DL+ F +FG + +V + ++ F+ F+ ++
Sbjct: 361 DDQRA--NRTLFLGNLDITVSETDLRRAFDRFGVITEVDIKRPGRGQTSTYGFLKFENLD 418
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
A AK A+ G NPIKI + + A P+ LWVGG+ V L F +FG I
Sbjct: 419 MAHRAKLAMSGKVLLRNPIKIGYGK-ATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTI 477
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQW------- 178
+ K + A+++Y L+ A A ++ G +GG +LRVDF ++ ++ +
Sbjct: 478 DYRKGDSWAYIQYESLDAAQAACTHMRGFPLGGPDRRLRVDFADTEHRYQQPYLQPLPLP 537
Query: 179 PNSHD--ARDGPIIG--RGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQ 233
P +H + G RG A R+ P R+RD P + WV PP V+
Sbjct: 538 PPAHYELVAEAAAFGAHRGAPPDPLRGARDRTPPLLYRDRDRDLYP-ETEWVPPPPPVR 595
Score = 41 (19.5 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
Identities = 16/77 (20%), Positives = 33/77 (42%)
Query: 740 GSSSARPL---LAEPHVQSIEQLGNHYNPQAQSLTHHYASMSSTPSHSAQMLLGNNQLQE 796
GSS +P LAE + +++ + + S H + ++ P S +++ G +
Sbjct: 629 GSSRDQPRKRRLAEDGGRHLDRSPDSER-SSSSRKRHCLTTTTPPDRSPELVGGRERYSS 687
Query: 797 STASLSQQGMVYSRPLP 813
S + ++ RP P
Sbjct: 688 DPERSSSRLLLLERPSP 704
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 187 (70.9 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 57/191 (29%), Positives = 98/191 (51%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
P P + A DD + +NL V L + T + + LFG G + DK+T S
Sbjct: 32 PSPMQTGAATDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QS 86
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKE 112
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++
Sbjct: 87 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 146
Query: 113 ELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLR 164
ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 147 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 206
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 207 VKFANN-PSQK 216
Score = 60 (26.2 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 37/158 (23%), Positives = 56/158 (35%)
Query: 150 LKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDA---RDGPIIGRGTGFSDNHSAYKRS 206
+K N Q + L P+RR P H A R ++ G S
Sbjct: 207 VKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVK-RFSPITID 265
Query: 207 HPQSSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSR 258
S VG N G ++V Y S DE +L FG + +K + +
Sbjct: 266 GMTSLVGMNIPGHTGTGWCIFV-YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCK 324
Query: 259 NYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
+ FV + DEA A L G D + + F +++
Sbjct: 325 GFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 37 (18.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ S+Q LSQ
Sbjct: 211 NNPSQKSSQALLSQ 224
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 187 (70.9 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 57/191 (29%), Positives = 98/191 (51%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
P P + A DD + +NL V L + T + + LFG G + DK+T S
Sbjct: 32 PSPMQTGAATDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QS 86
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKE 112
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++
Sbjct: 87 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 146
Query: 113 ELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLR 164
ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 147 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 206
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 207 VKFANN-PSQK 216
Score = 60 (26.2 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
Identities = 37/158 (23%), Positives = 56/158 (35%)
Query: 150 LKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDA---RDGPIIGRGTGFSDNHSAYKRS 206
+K N Q + L P+RR P H A R ++ G S
Sbjct: 207 VKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVK-RFSPITID 265
Query: 207 HPQSSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSR 258
S VG N G ++V Y S DE +L FG + +K + +
Sbjct: 266 GMTSLVGMNIPGHTGTGWCIFV-YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCK 324
Query: 259 NYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
+ FV + DEA A L G D + + F +++
Sbjct: 325 GFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 37 (18.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ S+Q LSQ
Sbjct: 211 NNPSQKSSQALLSQ 224
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 187 (70.9 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
Identities = 57/191 (29%), Positives = 98/191 (51%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
P P + A DD + +NL V L + T + + LFG G + DK+T S
Sbjct: 48 PSPMQTGAATDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QS 102
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKE 112
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++
Sbjct: 103 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 162
Query: 113 ELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLR 164
ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 163 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 222
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 223 VKFANN-PSQK 232
Score = 60 (26.2 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
Identities = 37/158 (23%), Positives = 56/158 (35%)
Query: 150 LKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDA---RDGPIIGRGTGFSDNHSAYKRS 206
+K N Q + L P+RR P H A R ++ G S
Sbjct: 223 VKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVK-RFSPITID 281
Query: 207 HPQSSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSR 258
S VG N G ++V Y S DE +L FG + +K + +
Sbjct: 282 GMTSLVGMNIPGHTGTGWCIFV-YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCK 340
Query: 259 NYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
+ FV + DEA A L G D + + F +++
Sbjct: 341 GFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 378
Score = 37 (18.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ S+Q LSQ
Sbjct: 227 NNPSQKSSQALLSQ 240
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 187 (70.9 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 57/191 (29%), Positives = 98/191 (51%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
P P + A DD + +NL V L + T + + LFG G + DK+T S
Sbjct: 37 PSPMQTGAATDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QS 91
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKE 112
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++
Sbjct: 92 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 151
Query: 113 ELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLR 164
ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 152 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 211
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 212 VKFANN-PSQK 221
Score = 59 (25.8 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 34/140 (24%), Positives = 51/140 (36%)
Query: 168 LRSQPSRREQWPNSHDA---RDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSK-- 222
L P+RR P H A R ++ G S S VG N G
Sbjct: 230 LYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVK-RFSPITIDGMTSLVGMNIPGHTGTGW 288
Query: 223 ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKE 276
++V Y S DE +L FG + +K + + + FV + DEA A
Sbjct: 289 CIFV-YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 347
Query: 277 GLQGRLFNDPRITIMFSSSE 296
L G D + + F +++
Sbjct: 348 SLNGYRLGDRVLQVSFKTNK 367
>ZFIN|ZDB-GENE-040426-1811 [details] [associations]
symbol:zgc:77262 "zgc:77262" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1811 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P19339 HOVERGEN:HBG002295 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 EMBL:BX530031 EMBL:BC065633
IPI:IPI00497767 RefSeq:NP_991217.1 UniGene:Dr.6046
Ensembl:ENSDART00000065402 Ensembl:ENSDART00000145013 GeneID:402952
KEGG:dre:402952 InParanoid:Q6P0G2 OMA:HMAKERE NextBio:20816762
Uniprot:Q6P0G2
Length = 331
Score = 197 (74.4 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 45/153 (29%), Positives = 86/153 (56%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR 82
++VGN+++ TT+ +L+ LF K+GA+ +++ FV+ E A+ A AL +
Sbjct: 4 IFVGNVASATTEDELRALFEKYGAVSDCDIL--KNYGFVHMDEEEAAQKAVSALHKHEVN 61
Query: 83 GNPIKIEFARP-AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYS 141
G+ I +E+A + + ++VG + + V+ +++E F FG + + +K N AFV
Sbjct: 62 GSRITVEYATTKVRNATKIYVGNVPEGVAAAKIKELFQPFGKVVECDIVK--NYAFVHMQ 119
Query: 142 RLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174
R +A +A+ +N ++ G+++ V RS PSR
Sbjct: 120 RENEALDAIAKLNHSKVDGQKIFVSLSRSNPSR 152
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 191 (72.3 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 58/189 (30%), Positives = 97/189 (51%)
Query: 5 PSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRS 57
P + N D K +NL V L + T +LK LFG G + DK+T S
Sbjct: 55 PVESNNTEDSK-----TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLG 109
Query: 58 FAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEEL 114
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++EL
Sbjct: 110 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 169
Query: 115 EEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLRVD 166
E+ F ++G I + L D T F+ + + +A EA+K +NG++ G E + V
Sbjct: 170 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVK 229
Query: 167 FLRSQPSRR 175
F + PS++
Sbjct: 230 FANN-PSQK 237
Score = 53 (23.7 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 17/68 (25%), Positives = 28/68 (41%)
Query: 235 DEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRI 288
DE +L FG + +K + + + FV + DEA A L G D +
Sbjct: 318 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 377
Query: 289 TIMFSSSE 296
+ F +S+
Sbjct: 378 QVSFKTSK 385
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 195 (73.7 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 57/180 (31%), Positives = 92/180 (51%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYMEPKDAEKAI 126
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F +FG I + L
Sbjct: 127 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRIL 186
Query: 131 KDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQWPNSH 182
D T F+ + R +A EA+K +NG++ G E + V F + + Q SH
Sbjct: 187 VDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQKSSQALLSH 246
Score = 48 (22.0 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 16/68 (23%), Positives = 28/68 (41%)
Query: 235 DEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRI 288
DE +L FG + +K + + + FV + DEA A L G D +
Sbjct: 317 DENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVL 376
Query: 289 TIMFSSSE 296
+ F +++
Sbjct: 377 QVSFKTNK 384
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 183 (69.5 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 56/191 (29%), Positives = 97/191 (50%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
P P + DD + +NL V L + T + + LFG G + DK+T S
Sbjct: 37 PSPMQTGATTDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QS 91
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKE 112
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++
Sbjct: 92 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 151
Query: 113 ELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLR 164
ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 152 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 211
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 212 VKFANN-PSQK 221
Score = 60 (26.2 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 37/158 (23%), Positives = 56/158 (35%)
Query: 150 LKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDA---RDGPIIGRGTGFSDNHSAYKRS 206
+K N Q + L P+RR P H A R ++ G S
Sbjct: 212 VKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVK-RFSPITID 270
Query: 207 HPQSSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSR 258
S VG N G ++V Y S DE +L FG + +K + +
Sbjct: 271 GMTSLVGMNIPGHTGTGWCIFV-YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCK 329
Query: 259 NYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
+ FV + DEA A L G D + + F +++
Sbjct: 330 GFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 367
Score = 37 (18.1 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ S+Q LSQ
Sbjct: 216 NNPSQKSSQALLSQ 229
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 182 (69.1 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 54/173 (31%), Positives = 92/173 (53%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAI 97
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 131 KDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRR 175
D T F+ + + +A EA+K +NG++ G E + V F + PS++
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN-PSQK 209
Score = 60 (26.2 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
Identities = 32/140 (22%), Positives = 51/140 (36%)
Query: 168 LRSQPSRREQWPNSHDA---RDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSK-- 222
L P+RR P + A R ++ G S S G N G P
Sbjct: 218 LYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGW 277
Query: 223 ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKE 276
++V Y + DE +L FG + +K + + + FV + DEA A
Sbjct: 278 CIFV-YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 336
Query: 277 GLQGRLFNDPRITIMFSSSE 296
L G D + + F +++
Sbjct: 337 SLNGYRLGDRVLQVSFKTNK 356
Score = 39 (18.8 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ +NQ LSQ
Sbjct: 204 NNPSQKTNQAILSQ 217
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 187 (70.9 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 57/191 (29%), Positives = 98/191 (51%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
P P + A DD + +NL V L + T + + LFG G + DK+T S
Sbjct: 25 PSPMQTGAATDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QS 79
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKE 112
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++
Sbjct: 80 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 139
Query: 113 ELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLR 164
ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 140 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 199
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 200 VKFANN-PSQK 209
Score = 55 (24.4 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 24/95 (25%), Positives = 38/95 (40%)
Query: 210 SSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYS 261
S VG N G ++V Y S DE +L FG + +K + + +
Sbjct: 276 SLVGMNIPGHTGTGWCIFV-YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 334
Query: 262 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
FV + DEA A L G D + + F +++
Sbjct: 335 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 369
Score = 37 (18.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ S+Q LSQ
Sbjct: 204 NNPSQKSSQALLSQ 217
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 187 (70.9 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 57/191 (29%), Positives = 98/191 (51%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
P P + A DD + +NL V L + T + + LFG G + DK+T S
Sbjct: 25 PSPMQTGAATDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QS 79
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKE 112
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++
Sbjct: 80 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 139
Query: 113 ELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLR 164
ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 140 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 199
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 200 VKFANN-PSQK 209
Score = 55 (24.4 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 24/95 (25%), Positives = 38/95 (40%)
Query: 210 SSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYS 261
S VG N G ++V Y S DE +L FG + +K + + +
Sbjct: 276 SLVGMNIPGHTGTGWCIFV-YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 334
Query: 262 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
FV + DEA A L G D + + F +++
Sbjct: 335 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 369
Score = 37 (18.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ S+Q LSQ
Sbjct: 204 NNPSQKSSQALLSQ 217
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 191 (72.3 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 52/176 (29%), Positives = 87/176 (49%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK----VTTYSSRSFAFVYFKRVEDA 69
+ E P + L+VGNLS D T+A + +LF + G + T + + FV F A
Sbjct: 2 EDEMPKT--LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHA 59
Query: 70 KAAKDALQGSDFRGNPIKIEFAR-PAKPSK------HLWVGGISQTVSKEELEEGFLKFG 122
AA A+ G G +K+ +A P+ K H++VG +S ++ E+++ F FG
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFG 119
Query: 123 NIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172
I D + +KD T FV + DA A++ + G+ +GG Q+R ++ +P
Sbjct: 120 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 175
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 187 (70.9 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 57/191 (29%), Positives = 98/191 (51%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
P P + A DD + +NL V L + T + + LFG G + DK+T S
Sbjct: 32 PSPMQTGAATDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QS 86
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKE 112
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++
Sbjct: 87 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 146
Query: 113 ELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLR 164
ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 147 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 206
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 207 VKFANN-PSQK 216
Score = 55 (24.4 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 24/95 (25%), Positives = 38/95 (40%)
Query: 210 SSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYS 261
S VG N G ++V Y S DE +L FG + +K + + +
Sbjct: 283 SLVGMNIPGHTGTGWCIFV-YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 341
Query: 262 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
FV + DEA A L G D + + F +++
Sbjct: 342 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Score = 37 (18.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ S+Q LSQ
Sbjct: 211 NNPSQKSSQALLSQ 224
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 190 (71.9 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 50/167 (29%), Positives = 83/167 (49%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDK----VTTYSSRSFAFVYFKRVEDAKAAKDALQG 78
L+VGNLS D T+A + +LF + G + T + + FV F A AA A+ G
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 64
Query: 79 SDFRGNPIKIEFAR-PAKPSK------HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLK 131
G +K+ +A P+ K H++VG +S ++ E+++ F FG I D + +K
Sbjct: 65 RKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 124
Query: 132 DGNTA------FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172
D T FV + DA A++ + G+ +GG Q+R ++ +P
Sbjct: 125 DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 171
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 187 (70.9 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 57/191 (29%), Positives = 98/191 (51%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
P P + A DD + +NL V L + T + + LFG G + DK+T S
Sbjct: 36 PSPMQTGAATDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QS 90
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKE 112
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++
Sbjct: 91 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 150
Query: 113 ELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLR 164
ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 151 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 210
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 211 VKFANN-PSQK 220
Score = 55 (24.4 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 24/95 (25%), Positives = 38/95 (40%)
Query: 210 SSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYS 261
S VG N G ++V Y S DE +L FG + +K + + +
Sbjct: 287 SLVGMNIPGHTGTGWCIFV-YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 345
Query: 262 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
FV + DEA A L G D + + F +++
Sbjct: 346 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 380
Score = 37 (18.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ S+Q LSQ
Sbjct: 215 NNPSQKSSQALLSQ 228
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 187 (70.9 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 57/191 (29%), Positives = 98/191 (51%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
P P + A DD + +NL V L + T + + LFG G + DK+T S
Sbjct: 37 PSPMQTGAATDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QS 91
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKE 112
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++
Sbjct: 92 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 151
Query: 113 ELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLR 164
ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 152 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 211
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 212 VKFANN-PSQK 221
Score = 55 (24.4 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 24/95 (25%), Positives = 38/95 (40%)
Query: 210 SSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYS 261
S VG N G ++V Y S DE +L FG + +K + + +
Sbjct: 288 SLVGMNIPGHTGTGWCIFV-YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 346
Query: 262 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
FV + DEA A L G D + + F +++
Sbjct: 347 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 381
Score = 37 (18.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ S+Q LSQ
Sbjct: 216 NNPSQKSSQALLSQ 229
>ZFIN|ZDB-GENE-040426-2455 [details] [associations]
symbol:rbm14b "RNA binding motif protein 14b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-2455 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF57756 HSSP:P19339
KO:K13189 HOVERGEN:HBG062132 EMBL:BC056604 EMBL:BC068361
IPI:IPI00492284 RefSeq:NP_997973.1 UniGene:Dr.132507 GeneID:402858
KEGG:dre:402858 CTD:402858 InParanoid:Q6NV05 NextBio:20816684
Uniprot:Q6NV05
Length = 556
Score = 197 (74.4 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 51/155 (32%), Positives = 85/155 (54%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR 82
L+VGNL+ DTT +L +F +G + V+ R FAFV+ + A+ A L G +F+
Sbjct: 9 LFVGNLALDTTQEELSAIFESYGQV--VSCSVLRQFAFVHLQGEGAAERAIRELNGREFK 66
Query: 83 GNPIKIEFARPAKP--SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEY 140
G + +E +R +P S ++VG +S + E+L+E F FG + + +K AFV
Sbjct: 67 GRNLVVEESR-GRPLHSTKVFVGNLSSMCTTEDLQELFQTFGKVLECDKVK--GYAFVHM 123
Query: 141 SRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRR 175
EDA +A++ ++G G L V+ + QPS++
Sbjct: 124 ENKEDALQAIEALHGTSFKGRPLSVELSKVQPSKQ 158
Score = 147 (56.8 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 38/102 (37%), Positives = 58/102 (56%)
Query: 9 NRAYDDKEAPP--SSNLWVGNLSADTTDADLKELFGKFGAL---DKVTTYSSRSFAFVYF 63
N ++ P S+ ++VGNLS+ T DL+ELF FG + DKV + +AFV+
Sbjct: 69 NLVVEESRGRPLHSTKVFVGNLSSMCTTEDLQELFQTFGKVLECDKV-----KGYAFVHM 123
Query: 64 KRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGI 105
+ EDA A +AL G+ F+G P+ +E ++ +PSK G I
Sbjct: 124 ENKEDALQAIEALHGTSFKGRPLSVELSK-VQPSKQTPTGKI 164
Score = 51 (23.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 636 AMVPPQTVDKQNIPPPHAEYGLTRPK 661
AM P+ + IPP H E L RP+
Sbjct: 520 AMATPRVYEPPPIPPSHKEPLLRRPE 545
Score = 47 (21.6 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 16/63 (25%), Positives = 22/63 (34%)
Query: 703 GSNNAAAISQAGVKLTPELIATLTSLIPATKSAEVAPGSSSARPLLAEPHVQSIEQLGNH 762
G A A ++ G + P + L S + T A G S A L + Q
Sbjct: 233 GLTAAGARAEGGAAVAPAVYGALASQVYGTAVANQLYGGSVANQALNSSAAAAAAQAYGS 292
Query: 763 YNP 765
NP
Sbjct: 293 VNP 295
Score = 46 (21.3 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 702 YGSNNA-AAIS--QAGVKLTPELIATLTSLIPATKSAEV--APGSSSARPLLAEP 751
Y +++A AA+S Q+ ++ + +ATL SL P +A V A + A P + EP
Sbjct: 475 YPAHSALAAMSALQSLPGVSAQQVATLDSLRPVLPAAPVPAAAAIAMATPRVYEP 529
Score = 44 (20.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 704 SNNAAAISQAGVKLTPELIATLTS-LIPATKSAEVAPG 740
S+ AAA +QA + P L +TS + A +A A G
Sbjct: 280 SSAAAAAAQAYGSVNPALYGQMTSGAVAAAAAAAAAYG 317
Score = 40 (19.1 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 851 GTE-ASTLYGSSVFQQPNNPTAVS 873
GT A+ LYG SV Q N +A +
Sbjct: 261 GTAVANQLYGGSVANQALNSSAAA 284
>UNIPROTKB|E9PB51 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
Length = 240
Score = 176 (67.0 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 48/163 (29%), Positives = 88/163 (53%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ 177
R EDA EA++ ++ + G+++ V LR+ P +Q
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQ 159
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 182 (69.1 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 54/173 (31%), Positives = 92/173 (53%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAI 126
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 127 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 186
Query: 131 KDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRR 175
D T F+ + + +A EA+K +NG++ G E + V F + PS++
Sbjct: 187 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN-PSQK 238
Score = 58 (25.5 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 33/140 (23%), Positives = 52/140 (37%)
Query: 168 LRSQPSRREQWPNSHDA---RDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSK-- 222
L P+RR P + A R ++ G S S G N G P
Sbjct: 247 LYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGW 306
Query: 223 ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKE 276
++V Y + DE +L FG + +K + + + FV + DEA A
Sbjct: 307 CIFV-YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 365
Query: 277 GLQGRLFNDPRITIMFSSSE 296
L G D R+ +F +++
Sbjct: 366 SLNGYRLGD-RVLQVFKTNK 384
Score = 39 (18.8 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ +NQ LSQ
Sbjct: 233 NNPSQKTNQAILSQ 246
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 183 (69.5 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 56/191 (29%), Positives = 97/191 (50%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
P P + DD + +NL V L + T + + LFG G + DK+T S
Sbjct: 32 PSPMQTGATTDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QS 86
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKE 112
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++
Sbjct: 87 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 146
Query: 113 ELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLR 164
ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 147 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 206
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 207 VKFANN-PSQK 216
Score = 55 (24.4 bits), Expect = 6.9e-12, Sum P(2) = 6.9e-12
Identities = 24/95 (25%), Positives = 38/95 (40%)
Query: 210 SSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYS 261
S VG N G ++V Y S DE +L FG + +K + + +
Sbjct: 283 SLVGMNIPGHTGTGWCIFV-YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 341
Query: 262 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
FV + DEA A L G D + + F +++
Sbjct: 342 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Score = 37 (18.1 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ S+Q LSQ
Sbjct: 211 NNPSQKSSQALLSQ 224
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 183 (69.5 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 57/185 (30%), Positives = 95/185 (51%)
Query: 9 NRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFV 61
N A DD + +NL V L + T + K LFG G + DK+T S + FV
Sbjct: 31 NGATDDSK----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG-QSLGYGFV 85
Query: 62 YFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGF 118
+ DA A + L G + IK+ +ARP+ S +L+V G+ +T+S++E+E+ F
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Query: 119 LKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQ-IGG-EQLRVDFLRS 170
++G I + L D T F+ + + +A EA+K +NG++ +G E + V F +
Sbjct: 146 SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205
Query: 171 QPSRR 175
PS++
Sbjct: 206 -PSQK 209
Score = 54 (24.1 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 228 YPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGR 281
Y S + DE +L FG + +K + + + FV + DEA A L G
Sbjct: 289 YNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY 348
Query: 282 LFNDPRITIMFSSSE 296
+ + + F +S+
Sbjct: 349 RLGERVLQVSFKTSK 363
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 183 (69.5 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 57/185 (30%), Positives = 95/185 (51%)
Query: 9 NRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFV 61
N A DD + +NL V L + T + K LFG G + DK+T S + FV
Sbjct: 31 NGATDDSK----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG-QSLGYGFV 85
Query: 62 YFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGF 118
+ DA A + L G + IK+ +ARP+ S +L+V G+ +T+S++E+E+ F
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Query: 119 LKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQ-IGG-EQLRVDFLRS 170
++G I + L D T F+ + + +A EA+K +NG++ +G E + V F +
Sbjct: 146 SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205
Query: 171 QPSRR 175
PS++
Sbjct: 206 -PSQK 209
Score = 54 (24.1 bits), Expect = 7.1e-12, Sum P(2) = 7.1e-12
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 228 YPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGR 281
Y S + DE +L FG + +K + + + FV + DEA A L G
Sbjct: 289 YNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY 348
Query: 282 LFNDPRITIMFSSSE 296
+ + + F +S+
Sbjct: 349 RLGERVLQVSFKTSK 363
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 183 (69.5 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 56/191 (29%), Positives = 97/191 (50%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
P P + DD + +NL V L + T + + LFG G + DK+T S
Sbjct: 37 PSPMQTGATTDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QS 91
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKE 112
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++
Sbjct: 92 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 151
Query: 113 ELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLR 164
ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 152 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 211
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 212 VKFANN-PSQK 221
Score = 55 (24.4 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 24/95 (25%), Positives = 38/95 (40%)
Query: 210 SSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYS 261
S VG N G ++V Y S DE +L FG + +K + + +
Sbjct: 288 SLVGMNIPGHTGTGWCIFV-YNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFG 346
Query: 262 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
FV + DEA A L G D + + F +++
Sbjct: 347 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 381
Score = 37 (18.1 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ S+Q LSQ
Sbjct: 216 NNPSQKSSQALLSQ 229
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 172 (65.6 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 48/152 (31%), Positives = 81/152 (53%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAI 97
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 131 KDGNTA------FVEYSRLEDAAEALKNINGR 156
D T F+ + + +A EA+K +NG+
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 182 (69.1 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 57/185 (30%), Positives = 95/185 (51%)
Query: 9 NRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFV 61
N A DD + +NL V L + T + K LFG G + DK+T S + FV
Sbjct: 31 NGATDDSK----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG-QSLGYGFV 85
Query: 62 YFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGF 118
+ DA A + L G + IK+ +ARP+ S +L+V G+ +T+S++E+E+ F
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Query: 119 LKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQ-IGG-EQLRVDFLRS 170
++G I + L D T F+ + + +A EA+K +NG++ +G E + V F +
Sbjct: 146 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205
Query: 171 QPSRR 175
PS++
Sbjct: 206 -PSQK 209
Score = 54 (24.1 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 228 YPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGR 281
Y S + DE +L FG + +K + + + FV + DEA A L G
Sbjct: 289 YNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY 348
Query: 282 LFNDPRITIMFSSSE 296
+ + + F +S+
Sbjct: 349 RLGERVLQVSFKTSK 363
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 182 (69.1 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 57/185 (30%), Positives = 95/185 (51%)
Query: 9 NRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFV 61
N A DD + +NL V L + T + K LFG G + DK+T S + FV
Sbjct: 31 NGATDDSK----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG-QSLGYGFV 85
Query: 62 YFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGF 118
+ DA A + L G + IK+ +ARP+ S +L+V G+ +T+S++E+E+ F
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Query: 119 LKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQ-IGG-EQLRVDFLRS 170
++G I + L D T F+ + + +A EA+K +NG++ +G E + V F +
Sbjct: 146 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205
Query: 171 QPSRR 175
PS++
Sbjct: 206 -PSQK 209
Score = 54 (24.1 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 228 YPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGR 281
Y S + DE +L FG + +K + + + FV + DEA A L G
Sbjct: 289 YNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY 348
Query: 282 LFNDPRITIMFSSSE 296
+ + + F +S+
Sbjct: 349 RLGERVLQVSFKTSK 363
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 182 (69.1 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 57/185 (30%), Positives = 95/185 (51%)
Query: 9 NRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFV 61
N A DD + +NL V L + T + K LFG G + DK+T S + FV
Sbjct: 31 NGATDDSK----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG-QSLGYGFV 85
Query: 62 YFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGF 118
+ DA A + L G + IK+ +ARP+ S +L+V G+ +T+S++E+E+ F
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Query: 119 LKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQ-IGG-EQLRVDFLRS 170
++G I + L D T F+ + + +A EA+K +NG++ +G E + V F +
Sbjct: 146 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205
Query: 171 QPSRR 175
PS++
Sbjct: 206 -PSQK 209
Score = 54 (24.1 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 228 YPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGR 281
Y S + DE +L FG + +K + + + FV + DEA A L G
Sbjct: 289 YNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY 348
Query: 282 LFNDPRITIMFSSSE 296
+ + + F +S+
Sbjct: 349 RLGERVLQVSFKTSK 363
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 182 (69.1 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 57/185 (30%), Positives = 95/185 (51%)
Query: 9 NRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFV 61
N A DD + +NL V L + T + K LFG G + DK+T S + FV
Sbjct: 31 NGATDDSK----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG-QSLGYGFV 85
Query: 62 YFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGF 118
+ DA A + L G + IK+ +ARP+ S +L+V G+ +T+S++E+E+ F
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Query: 119 LKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQ-IGG-EQLRVDFLRS 170
++G I + L D T F+ + + +A EA+K +NG++ +G E + V F +
Sbjct: 146 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205
Query: 171 QPSRR 175
PS++
Sbjct: 206 -PSQK 209
Score = 54 (24.1 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 18/75 (24%), Positives = 31/75 (41%)
Query: 228 YPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGR 281
Y S + DE +L FG + +K + + + FV + DEA A L G
Sbjct: 290 YNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY 349
Query: 282 LFNDPRITIMFSSSE 296
+ + + F +S+
Sbjct: 350 RLGERVLQVSFKTSK 364
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 182 (69.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 54/173 (31%), Positives = 92/173 (53%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAI 97
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 131 KDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRR 175
D T F+ + + +A EA+K +NG++ G E + V F + PS++
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN-PSQK 209
Score = 53 (23.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 23/95 (24%), Positives = 38/95 (40%)
Query: 210 SSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYS 261
S G N G P ++V Y + DE +L FG + +K + + +
Sbjct: 262 SLAGINIPGHPGTGWCIFV-YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 320
Query: 262 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
FV + DEA A L G D + + F +++
Sbjct: 321 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
Score = 39 (18.8 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ +NQ LSQ
Sbjct: 204 NNPSQKTNQAILSQ 217
>DICTYBASE|DDB_G0269286 [details] [associations]
symbol:DDB_G0269286 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0269286 EMBL:AAFI02000005 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:XP_645848.1
ProteinModelPortal:Q55ED3 EnsemblProtists:DDB0190151 GeneID:8616792
KEGG:ddi:DDB_G0269286 eggNOG:KOG0123 InParanoid:Q55ED3 OMA:DYASSYK
Uniprot:Q55ED3
Length = 1235
Score = 138 (53.6 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 30/90 (33%), Positives = 51/90 (56%)
Query: 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK---VTTYSSRSFAFVYFKRVEDAKA 71
K PP+SNL++ N+ + D +LF K+G + V T+ +AFV ++ +E A
Sbjct: 21 KPHPPASNLYIRNIDRPVNERDFLDLFSKYGKIKNHSIVETHPKGPYAFVEYETLEQADE 80
Query: 72 AKDALQGSDFRGNPIKIEFA----RPAKPS 97
AK++L + F+G + I++A PAKP+
Sbjct: 81 AKESLNKATFKGKKLFIDYASSYKNPAKPN 110
Score = 129 (50.5 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 37/144 (25%), Positives = 73/144 (50%)
Query: 84 NPIKIEF-ARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---GNTAFVE 139
N KI+ +P P+ +L++ I + V++ + + F K+G I++ ++ G AFVE
Sbjct: 12 NSHKIQDKTKPHPPASNLYIRNIDRPVNERDFLDLFSKYGKIKNHSIVETHPKGPYAFVE 71
Query: 140 YSRLEDAAEALKNINGRQIGGEQLRVDFLRS--QPSRREQWPNSHDARDGPIIGRGTGFS 197
Y LE A EA +++N G++L +D+ S P++ + ++D+ D + S
Sbjct: 72 YETLEQADEAKESLNKATFKGKKLFIDYASSYKNPAKPNNFNYNYDSNDSNNSTNSSSSS 131
Query: 198 -DNHSAYKR---SHPQSSVGRNRD 217
N ++Y + +H +S N +
Sbjct: 132 LSNSNSYSKPYDNHNNNSYNNNNN 155
Score = 108 (43.1 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 35/123 (28%), Positives = 55/123 (44%)
Query: 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNING 155
P L+VGG S+ S EL + F + G I F + AF+EY EDA +A+ +
Sbjct: 170 PKSRLYVGGYSENTSPSELLQLFQEIGPIMKSHFDEKKYFAFIEYQSSEDAEKAIDKYHQ 229
Query: 156 RQIGGEQLRVDFLRSQPSRREQWPNSHDARDG-PIIGRGTGFSDNHSAYKRSHPQSSVGR 214
G+ L+V++ + P R P+ R P R +DN + RS + +
Sbjct: 230 WDFHGKFLKVNYANA-PGSRGYSPSRGRTRSASPSRKRIRYENDNERSRSRSPNKYNYNN 288
Query: 215 NRD 217
N +
Sbjct: 289 NNN 291
Score = 56 (24.8 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 26/131 (19%), Positives = 53/131 (40%)
Query: 676 DDSKVQSKMHFPHASEPLIAHSSSMDYGSNNAAAISQAGVKLTPELIATLTSLIPATKS- 734
++ VQ+ F + I + +D SN + K L ++ T++ P T +
Sbjct: 806 NEEPVQNSNQFGSTNTTPIISETKIDSSSNAIEKAIEKDEKSVVPLSSSSTTIPPTTTTT 865
Query: 735 -AEVAPGSSSARPLLAEPHVQSIEQLGNHYNPQAQSLTHHYASMSSTPSHSAQMLLGNNQ 793
+ ++ S+ R L + + Q N+ N Q LT + + S+ L+ Q
Sbjct: 866 VSNISNKSNENRILNRNNNNNNNSQNNNNNNNQQTDLTGDFNKFKELITKSSFSLMTEIQ 925
Query: 794 LQESTASLSQQ 804
+ S+ S + +
Sbjct: 926 KKNSSHSKNSE 936
Score = 56 (24.8 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 30/124 (24%), Positives = 60/124 (48%)
Query: 198 DNHS--AYKRSHPQSSVGR----NRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIER 251
DNH+ +Y ++ ++ N + P S++ GY + E +L LF EI
Sbjct: 143 DNHNNNSYNNNNNNNNNSSYFSVNSNFPKSRLYVGGYSENTSPSE-LLQ----LFQEIGP 197
Query: 252 I-KSY--PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG-KDYPGSY 307
I KS+ + ++F+E++S ++A +A + F+ + + +++ APG + Y S
Sbjct: 198 IMKSHFDEKKYFAFIEYQSSEDAEKAIDKYHQWDFHGKFLKVNYAN---APGSRGYSPSR 254
Query: 308 SGTK 311
T+
Sbjct: 255 GRTR 258
Score = 41 (19.5 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 857 LYGSSVFQQPNNPTAVSNQVNLSQPQNVMTVSVDKVN-LEHPNHVQQLQSVLSG 909
L SS P T VSN N S ++ + + N ++ N+ Q+ L+G
Sbjct: 851 LSSSSTTIPPTTTTTVSNISNKSNENRILNRNNNNNNNSQNNNNNNNQQTDLTG 904
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 171 (65.3 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 58/198 (29%), Positives = 87/198 (43%)
Query: 23 LWVGNLSADTTDADLKELFGKFGA-------LDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++G LS DTT DLK+ F KFG LD +T SR F FV FK E D
Sbjct: 3 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG-RSRGFGFVLFKESESVDKVMDQ 61
Query: 76 LQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ G I + A+ K P K ++VGG+S +E++ E F FG +E + D
Sbjct: 62 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 120
Query: 133 GNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
T F+ + E + + K + + +++V + Q +++QW S
Sbjct: 121 NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW-GSRGGF 179
Query: 186 DGPIIGRGTGFSDNHSAY 203
G GRG D S Y
Sbjct: 180 AGRARGRG---GDQQSGY 194
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 179 (68.1 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 63/216 (29%), Positives = 94/216 (43%)
Query: 23 LWVGNLSADTTDADLKELFGKFGA-------LDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++G LS DTT DLK+ F KFG LD +T SR F FV FK E D
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG-RSRGFGFVLFKESESVDKVMDQ 59
Query: 76 LQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ G I + A+ K P K ++VGG+S +E++ E F FG +E + D
Sbjct: 60 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMD 118
Query: 133 GNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
T F+ + E + + K + + +++V + Q +++QW S
Sbjct: 119 NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW-GSRGGF 177
Query: 186 DGPIIGRGTGFSDN-HSAYKRSHPQS--SVGRNRDG 218
G GRG G S N + Y Q + G N G
Sbjct: 178 VGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQG 213
Score = 38 (18.4 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 834 YQFAAPSNSQKGYG 847
Y ++ SN Q GYG
Sbjct: 229 YGYSDYSNQQSGYG 242
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 179 (68.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 63/216 (29%), Positives = 94/216 (43%)
Query: 23 LWVGNLSADTTDADLKELFGKFGA-------LDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++G LS DTT DLK+ F KFG LD +T SR F FV FK E D
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG-RSRGFGFVLFKESESVDKVMDQ 60
Query: 76 LQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ G I + A+ K P K ++VGG+S +E++ E F FG +E + D
Sbjct: 61 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMD 119
Query: 133 GNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
T F+ + E + + K + + +++V + Q +++QW S
Sbjct: 120 NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW-GSRGGF 178
Query: 186 DGPIIGRGTGFSDN-HSAYKRSHPQS--SVGRNRDG 218
G GRG G S N + Y Q + G N G
Sbjct: 179 VGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQG 214
Score = 38 (18.4 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 834 YQFAAPSNSQKGYG 847
Y ++ SN Q GYG
Sbjct: 230 YGYSDYSNQQSGYG 243
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 182 (69.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 54/173 (31%), Positives = 92/173 (53%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAI 125
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 126 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 185
Query: 131 KDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRR 175
D T F+ + + +A EA+K +NG++ G E + V F + PS++
Sbjct: 186 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN-PSQK 237
Score = 53 (23.7 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 23/95 (24%), Positives = 38/95 (40%)
Query: 210 SSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYS 261
S G N G P ++V Y + DE +L FG + +K + + +
Sbjct: 290 SLAGINIPGHPGTGWCIFV-YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 348
Query: 262 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
FV + DEA A L G D + + F +++
Sbjct: 349 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 383
Score = 39 (18.8 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ +NQ LSQ
Sbjct: 232 NNPSQKTNQAILSQ 245
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 182 (69.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 54/173 (31%), Positives = 92/173 (53%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAI 126
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 127 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 186
Query: 131 KDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRR 175
D T F+ + + +A EA+K +NG++ G E + V F + PS++
Sbjct: 187 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN-PSQK 238
Score = 53 (23.7 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 23/95 (24%), Positives = 38/95 (40%)
Query: 210 SSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYS 261
S G N G P ++V Y + DE +L FG + +K + + +
Sbjct: 291 SLAGINIPGHPGTGWCIFV-YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 349
Query: 262 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
FV + DEA A L G D + + F +++
Sbjct: 350 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 384
Score = 39 (18.8 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ +NQ LSQ
Sbjct: 233 NNPSQKTNQAILSQ 246
>WB|WBGene00017929 [details] [associations]
symbol:grld-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 EMBL:FO080227 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GeneTree:ENSGT00530000063730 RefSeq:NP_741283.1
ProteinModelPortal:H2KYB8 SMR:H2KYB8 PRIDE:H2KYB8
EnsemblMetazoa:F29C4.7a.1 EnsemblMetazoa:F29C4.7a.2 GeneID:176827
KEGG:cel:CELE_F29C4.7 CTD:176827 WormBase:F29C4.7a OMA:ERNDCAR
Uniprot:H2KYB8
Length = 520
Score = 192 (72.6 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 56/196 (28%), Positives = 103/196 (52%)
Query: 5 PSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKV---TTYSS-RSFAF 60
PS + DD EA + L+VGN+ +D + +++ +F + G +++V T ++ ++AF
Sbjct: 155 PSTWRLKQDDDEA--TRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAF 212
Query: 61 VYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGF 118
V F+ V+ A AK Q R G+ +KI + + ++ S+ L+VGG+ KE L++ F
Sbjct: 213 VMFQTVDQAIQAKAEEQDRPIRAGGSRMKIGYGK-SQVSRRLFVGGLGSWCDKEILQKAF 271
Query: 119 LKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQI--GGEQLRVDF---LRSQPS 173
+FG +E+ + A+V Y + EA +++ G I G + VD+ L +QP
Sbjct: 272 GEFGFVENIDYDHGQPYAYVVYENTHTSQEACRSLRGACISKGNHPIMVDYAKDLTAQPE 331
Query: 174 RREQWPNSHDARDGPI 189
+ +Q+ A P+
Sbjct: 332 K-QQFMRKRRASKSPV 346
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 179 (68.1 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 63/216 (29%), Positives = 94/216 (43%)
Query: 23 LWVGNLSADTTDADLKELFGKFGA-------LDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++G LS DTT DLK+ F KFG LD +T SR F FV FK E D
Sbjct: 32 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG-RSRGFGFVLFKESESVDKVMDQ 90
Query: 76 LQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ G I + A+ K P K ++VGG+S +E++ E F FG +E + D
Sbjct: 91 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 149
Query: 133 GNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
T F+ + E + + K + + +++V + Q +++QW S
Sbjct: 150 NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW-GSRGGF 208
Query: 186 DGPIIGRGTGFSDN-HSAYKRSHPQS--SVGRNRDG 218
G GRG G S N + Y Q + G N G
Sbjct: 209 AGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQG 244
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 178 (67.7 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 54/179 (30%), Positives = 87/179 (48%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVE 67
D A ++ L+ GNL + A L ++ F + V T SR FAFV VE
Sbjct: 78 DPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVE 137
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSK--------H-LWVGGISQTVSKEELEEGF 118
D D L G+++ G +K+ FA KP+K H L+VG +S TV+ E L F
Sbjct: 138 DCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAF 197
Query: 119 LKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171
+ G++ + + DG+T FV YS + AL++++G ++ G +RV+ + +
Sbjct: 198 RECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 187 (70.9 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 60/202 (29%), Positives = 100/202 (49%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTY---SSRSFAFVYFKRVEDAKAAKDALQGS 79
L+VGNL + T+ + LF + G++ K S+ +AFV F D A ALQ
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFS---DHGQASQALQTM 104
Query: 80 DFR---GNPIKIEFA-RPAKP-SK-------HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
+ R +K+ +A P + SK H++VG +S V ++L E F FG++ D
Sbjct: 105 NKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDA 164
Query: 128 KFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNS 181
K ++D NT FV Y + E+A A++ +NG+ +G +R ++ +P +E+ P+
Sbjct: 165 KVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEK-PSH 223
Query: 182 HDARDGPIIGRGTGFSDNHSAY 203
++ + I T DN S Y
Sbjct: 224 YNEKSYDEIYNQTS-GDNTSVY 244
Score = 113 (44.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 31/114 (27%), Positives = 56/114 (49%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIG 159
++VG I+ +++++E+ +GF FG I + + K AFV++ + AA+A+ +N + +G
Sbjct: 243 VYVGNIA-SLTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVG 301
Query: 160 GEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVG 213
G+ +R W + D P G G+ N S+ S P S G
Sbjct: 302 GQLVRCS-----------WGKTGDTGKTPGGSYGYGYG-NSSSGGNSQPYSGYG 343
Score = 75 (31.5 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGALD--KV----TTYSSRSFAFVYFKRVEDAKAAKDA 75
+++VG+LS++ + L+E F FG + KV T S+ + FV + + E+A+ A +
Sbjct: 136 HVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQ 195
Query: 76 LQGSDFRGNPIKIEFA--RPA---KPSKH 99
+ G I+ +A +P KPS +
Sbjct: 196 MNGQWLGRRTIRTNWATRKPGDQEKPSHY 224
>DICTYBASE|DDB_G0274995 [details] [associations]
symbol:DDB_G0274995 "Uncharacterized RNA-binding
protein YPL184C" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0274995 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000012 eggNOG:NOG314315 RefSeq:XP_644288.1
ProteinModelPortal:Q86AS4 EnsemblProtists:DDB0217588 GeneID:8619716
KEGG:ddi:DDB_G0274995 InParanoid:Q86AS4 OMA:WIENTRT Uniprot:Q86AS4
Length = 1104
Score = 131 (51.2 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 29/81 (35%), Positives = 41/81 (50%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAA 72
+D++ PS LWVGN+ D ++ DLK FG FG L+ V ++ AFV FK +A A
Sbjct: 906 EDEDHLPSRVLWVGNIGMDVSEDDLKYEFGSFGELESVRILHNKYCAFVNFKDTNEAINA 965
Query: 73 KDALQGSDFRGNPIKIEFARP 93
K + I + F P
Sbjct: 966 KKGMHNQVLGSQYIVVNFRHP 986
Score = 119 (46.9 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNING 155
PS+ LWVG I VS+++L+ F FG +E + L + AFV + +A A K ++
Sbjct: 912 PSRVLWVGNIGMDVSEDDLKYEFGSFGELESVRILHNKYCAFVNFKDTNEAINAKKGMHN 971
Query: 156 RQIGGEQLRVDF 167
+ +G + + V+F
Sbjct: 972 QVLGSQYIVVNF 983
Score = 116 (45.9 bits), Expect = 4.4e-11, Sum P(2) = 4.4e-11
Identities = 20/71 (28%), Positives = 44/71 (61%)
Query: 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGR 156
S+ +++G +S + ++E+ + K+G IE + L+ AFV + + +A AL+ +NG+
Sbjct: 1010 SRAIYIGNVSDNLPEKEIRKECEKYGEIESIRILRKKACAFVNFMNIPNATAALQTLNGK 1069
Query: 157 QIGGEQLRVDF 167
++G +RV++
Sbjct: 1070 KLGDTIVRVNY 1080
Score = 68 (29.0 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 17/72 (23%), Positives = 35/72 (48%)
Query: 221 SKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQG 280
S+ +++G S + E+ + +GEIE I+ + +FV F ++ A A + L G
Sbjct: 1010 SRAIYIGNV-SDNLPEKEIRKECEKYGEIESIRILRKKACAFVNFMNIPNATAALQTLNG 1068
Query: 281 RLFNDPRITIMF 292
+ D + + +
Sbjct: 1069 KKLGDTIVRVNY 1080
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 164 (62.8 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 43/142 (30%), Positives = 78/142 (54%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGG 160
R EDA EA++ ++ + G
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQG 138
>UNIPROTKB|E9PM61 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
Length = 147
Score = 164 (62.8 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 43/142 (30%), Positives = 78/142 (54%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGG 160
R EDA EA++ ++ + G
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQG 138
>RGD|1306891 [details] [associations]
symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0002190 "cap-independent
translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=ISO] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO] [GO:0033554
"cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
binding" evidence=ISO] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
Length = 143
Score = 164 (62.8 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 43/142 (30%), Positives = 78/142 (54%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGG 160
R EDA EA++ ++ + G
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQG 138
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 175 (66.7 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 53/173 (30%), Positives = 91/173 (52%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAI 97
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 131 KDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRR 175
D T F+ + + +A EA+K +NG++ G E + V F + PS++
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN-PSQK 209
Score = 53 (23.7 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 23/95 (24%), Positives = 38/95 (40%)
Query: 210 SSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYS 261
S G N G P ++V Y + DE +L FG + +K + + +
Sbjct: 262 SLAGINIPGHPGTGWCIFV-YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 320
Query: 262 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
FV + DEA A L G D + + F +++
Sbjct: 321 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
Score = 39 (18.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ +NQ LSQ
Sbjct: 204 NNPSQKTNQAILSQ 217
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 175 (66.7 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 53/173 (30%), Positives = 91/173 (52%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAI 97
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 131 KDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRR 175
D T F+ + + +A EA+K +NG++ G E + V F + PS++
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN-PSQK 209
Score = 53 (23.7 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 23/95 (24%), Positives = 38/95 (40%)
Query: 210 SSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYS 261
S G N G P ++V Y + DE +L FG + +K + + +
Sbjct: 262 SLAGINIPGHPGTGWCIFV-YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 320
Query: 262 FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
FV + DEA A L G D + + F +++
Sbjct: 321 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
Score = 39 (18.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ +NQ LSQ
Sbjct: 204 NNPSQKTNQAILSQ 217
>UNIPROTKB|Q06AT9 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
"regulation of translation" evidence=ISS] [GO:0043153 "entrainment
of circadian clock by photoperiod" evidence=ISS] [GO:0032922
"circadian regulation of gene expression" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
KEGG:ssc:100144418 Uniprot:Q06AT9
Length = 359
Score = 182 (69.1 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 56/208 (26%), Positives = 106/208 (50%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ------WPNSHDARDGP 188
R EDA EA++ ++ + G+++ V LR+ P +Q H +++ P
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP 176
Query: 189 I--IGRGTGFSDNHSA-YKRSHPQSSVG 213
+ GR F++ ++ Y P ++G
Sbjct: 177 VDRTGRVADFTEQYNEQYGAVRPPYTMG 204
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 178 (67.7 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 53/173 (30%), Positives = 90/173 (52%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 67 TNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYVDPKDAEKAI 125
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 126 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 185
Query: 131 KDGNTA------FVEYSRLEDAAEALKNINGRQ--IGGEQLRVDFLRSQPSRR 175
D T F+ + + +A EA+K +NG++ E + V F + PS++
Sbjct: 186 VDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFANN-PSQK 237
Score = 50 (22.7 bits), Expect = 9.3e-11, Sum P(2) = 9.3e-11
Identities = 16/68 (23%), Positives = 28/68 (41%)
Query: 235 DEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRI 288
DE +L FG + +K + + + FV + DEA A L G D +
Sbjct: 317 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 376
Query: 289 TIMFSSSE 296
+ F +++
Sbjct: 377 QVSFKTNK 384
Score = 39 (18.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ +NQ LSQ
Sbjct: 232 NNPSQKTNQAILSQ 245
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 183 (69.5 bits), Expect = 9.7e-11, P = 9.7e-11
Identities = 56/191 (29%), Positives = 98/191 (51%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
P P + + DD + +NL V L + T + + LFG G + DK+T S
Sbjct: 74 PSPMQTGGSNDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QS 128
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKE 112
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++
Sbjct: 129 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 188
Query: 113 ELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLR 164
ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 189 ELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPIT 248
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 249 VKFANN-PSQK 258
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 187 (70.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 57/191 (29%), Positives = 98/191 (51%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
P P + A DD + +NL V L + T + + LFG G + DK+T S
Sbjct: 30 PSPMQTGAATDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-QS 84
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKE 112
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++
Sbjct: 85 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 144
Query: 113 ELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLR 164
ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 145 ELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 204
Query: 165 VDFLRSQPSRR 175
V F + PS++
Sbjct: 205 VKFANN-PSQK 214
Score = 37 (18.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ S+Q LSQ
Sbjct: 209 NNPSQKSSQALLSQ 222
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 162 (62.1 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 44/145 (30%), Positives = 79/145 (54%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQL 163
R EDA EA++ ++ + QL
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQDIQL 141
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 180 (68.4 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 71/278 (25%), Positives = 120/278 (43%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK----VTTYSSRSFAFVYFKRVEDA 69
D++ P + L+VGNLS D T+A + ++F + G + T + + FV F A
Sbjct: 4 DEDQPRT--LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHA 61
Query: 70 KAAKDALQGSDFRGNPIKIEFAR-PAKPSK------HLWVGGISQTVSKEELEEGFLKFG 122
AA A+ G G +K+ +A P+ K H++VG +S +S +++ F FG
Sbjct: 62 AAALAAMNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFG 121
Query: 123 NIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSH 182
I D + +KD T S+ + + +Q+ +L + R W
Sbjct: 122 KISDARVVKDLATG---KSKGYGFISFINKWDAES-AIQQMNGQWLGGRQIRTN-WATRK 176
Query: 183 DARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNA 242
+ P G S H +Y+ QSS P + ++ G S + +Q++
Sbjct: 177 PS--APK-SNNEGASSKHLSYEEVLNQSS-------PSNCTVYCGGIAS-GLSDQLMRQT 225
Query: 243 MILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQG 280
FG+I I+ +P + YSFV F S + A A + G
Sbjct: 226 FSPFGQIMEIRVFPEKGYSFVRFDSHEGAAHAIVSVNG 263
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 181 (68.8 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 64/224 (28%), Positives = 95/224 (42%)
Query: 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGA-------LDKVTTYSSRSFAFVYFKRVE 67
K +++G LS DTT DLK+ F KFG LD +T SR F FV FK E
Sbjct: 39 KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG-RSRGFGFVLFKESE 97
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNI 124
D + G I + A+ K P K ++VGG+S +E++ E F FG +
Sbjct: 98 SVDKVMDQKEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEV 156
Query: 125 EDFKFLKDGNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQ 177
E + D T F+ + E + + K + + +++V + Q +++Q
Sbjct: 157 ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQ 216
Query: 178 WPNSHDARDGPIIGRGTGFSDN-HSAYKRSHPQS--SVGRNRDG 218
W S G GRG G S N + Y Q + G N G
Sbjct: 217 W-GSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQG 259
Score = 37 (18.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 834 YQFAAPSNSQKGYG 847
Y + SN Q GYG
Sbjct: 275 YGYGDYSNQQSGYG 288
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 184 (69.8 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 65/224 (29%), Positives = 95/224 (42%)
Query: 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFG-------ALDKVTTYSSRSFAFVYFKRVE 67
K +++G LS DTT DLK+ F KFG LD +T SR F FV FK E
Sbjct: 70 KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITG-RSRGFGFVLFKESE 128
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNI 124
D + G I + A+ K P K ++VGG+S +E++ E F FG +
Sbjct: 129 SVDKVMDQKEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEV 187
Query: 125 EDFKFLKDGNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQ 177
E + D T F+ + E + + K + + +++V + Q +++Q
Sbjct: 188 ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQ 247
Query: 178 WPNSHDARDGPIIGRGTGFSDN-HSAYKRSHPQS--SVGRNRDG 218
W S G GRG G S N + Y Q S G N G
Sbjct: 248 W-GSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGSYGYNSQG 290
Score = 37 (18.1 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 834 YQFAAPSNSQKGYG 847
Y + SN Q GYG
Sbjct: 306 YGYGDYSNQQSGYG 319
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 179 (68.1 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 71/286 (24%), Positives = 125/286 (43%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSD 198
R EDA EA++ ++ + G+++ V SR P D G+ +
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQL---STSRLRTAPGMGDQSGCYRCGK-----E 168
Query: 199 NHSAYKRSHPQSSVGRNRDGPPSKILWVGY---PPSVQMDEQMLHNAMILFGEIERIKSY 255
H + + P GR D G P ++ E M +N +G ++ K Y
Sbjct: 169 GH--WSKECPVDRTGRVADFTEQYNEQYGAVRTPYTMGYGESMYYNDA--YGALDYYKRY 224
Query: 256 PSRNYSFVEFRSVDEARRAKEGLQGRL--FNDPRITIMFSSSELAP 299
R+Y V + A E L +T +S+ + P
Sbjct: 225 RVRSYEAVAAAAAASAYNYAEQTMSHLPQVQSTTVTSHLNSTSVDP 270
>UNIPROTKB|J3QRR5 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
Ensembl:ENST00000578778 Uniprot:J3QRR5
Length = 155
Score = 159 (61.0 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 42/139 (30%), Positives = 77/139 (55%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQ 157
R EDA EA++ ++ +
Sbjct: 117 HMERAEDAVEAIRGLDNTE 135
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 182 (69.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 54/173 (31%), Positives = 92/173 (53%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAI 97
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 131 KDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRR 175
D T F+ + + +A EA+K +NG++ G E + V F + PS++
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN-PSQK 209
Score = 39 (18.8 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ +NQ LSQ
Sbjct: 204 NNPSQKTNQAILSQ 217
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 178 (67.7 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 53/195 (27%), Positives = 101/195 (51%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ------WPNSHDARDGP 188
R EDA EA++ ++ + G+++ V LR+ P +Q H +++ P
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP 176
Query: 189 I--IGRGTGFSDNHS 201
+ GR F++ ++
Sbjct: 177 VDRTGRVADFTEQYN 191
>UNIPROTKB|Q9BDY9 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9986
"Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=ISS] [GO:0002190
"cap-independent translational initiation" evidence=ISS]
[GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0032055
"negative regulation of translation in response to stress"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
regulation of muscle cell differentiation" evidence=ISS]
[GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
[GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
"pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
[GO:0097167 "circadian regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
Uniprot:Q9BDY9
Length = 359
Score = 178 (67.7 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 53/195 (27%), Positives = 101/195 (51%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ------WPNSHDARDGP 188
R EDA EA++ ++ + G+++ V LR+ P +Q H +++ P
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP 176
Query: 189 I--IGRGTGFSDNHS 201
+ GR F++ ++
Sbjct: 177 VDRTGRVADFTEQYN 191
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 178 (67.7 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 53/195 (27%), Positives = 101/195 (51%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ------WPNSHDARDGP 188
R EDA EA++ ++ + G+++ V LR+ P +Q H +++ P
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP 176
Query: 189 I--IGRGTGFSDNHS 201
+ GR F++ ++
Sbjct: 177 VDRTGRVADFTEQYN 191
Score = 43 (20.2 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 452 SRKIDDHGLVLDQSYGLGSITGGPASGAFVNVQGRNRLSPVASKV----TAG-GFGRNP 505
S +D + L Q+ G + + A+ A + GR+R SP+ T G G+G P
Sbjct: 265 STSVDPYDRHLLQNSGSAATSAAMAAAASSSYYGRDR-SPLRRNAAVLPTVGEGYGYGP 322
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 178 (67.7 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 53/195 (27%), Positives = 101/195 (51%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ------WPNSHDARDGP 188
R EDA EA++ ++ + G+++ V LR+ P +Q H +++ P
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP 176
Query: 189 I--IGRGTGFSDNHS 201
+ GR F++ ++
Sbjct: 177 VDRTGRVADFTEQYN 191
Score = 43 (20.2 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 452 SRKIDDHGLVLDQSYGLGSITGGPASGAFVNVQGRNRLSPVASKV----TAG-GFGRNP 505
S +D + L Q+ G + + A+ A + GR+R SP+ T G G+G P
Sbjct: 265 STSVDPYDRHLLQNSGSAATSAAMAAAASSSYYGRDR-SPLRRNAAVLPTVGEGYGYGP 322
>UNIPROTKB|Q2KIV3 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
Length = 359
Score = 177 (67.4 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 48/163 (29%), Positives = 88/163 (53%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ 177
R EDA EA++ ++ + G+++ V LR+ P +Q
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQ 159
>UNIPROTKB|D4A1W5 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
ArrayExpress:D4A1W5 Uniprot:D4A1W5
Length = 361
Score = 177 (67.4 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 48/163 (29%), Positives = 88/163 (53%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ 177
R EDA EA++ ++ + G+++ V LR+ P +Q
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQ 159
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 177 (67.4 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 54/195 (27%), Positives = 101/195 (51%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ------WPNSHDARDGP 188
R EDA EA++ ++ + G+++ V LR+ P +Q H +++ P
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP 176
Query: 189 I--IGRGTGFSDNHS 201
I GR F++ ++
Sbjct: 177 IDRSGRVADFTEQYN 191
>MGI|MGI:1913895 [details] [associations]
symbol:Pspc1 "paraspeckle protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1913895 GO:GO:0005737 GO:GO:0005730 GO:GO:0006355
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 GeneTree:ENSGT00390000005004
HOGENOM:HOG000231095 HOVERGEN:HBG009801 CTD:55269 OMA:DNREQEM
OrthoDB:EOG444KKN HSSP:Q99K48 ChiTaRS:PSPC1 EMBL:AK011272
EMBL:AK017689 EMBL:AK150823 EMBL:AK160722 EMBL:BC026772
IPI:IPI00321266 IPI:IPI00857897 RefSeq:NP_079958.3 UniGene:Mm.20129
ProteinModelPortal:Q8R326 SMR:Q8R326 IntAct:Q8R326 MINT:MINT-218330
STRING:Q8R326 PhosphoSite:Q8R326 PaxDb:Q8R326 PRIDE:Q8R326
Ensembl:ENSMUST00000022507 Ensembl:ENSMUST00000163924 GeneID:66645
KEGG:mmu:66645 UCSC:uc007ucj.1 UCSC:uc007uck.1 InParanoid:Q8R326
NextBio:322261 Bgee:Q8R326 CleanEx:MM_PSPC1 Genevestigator:Q8R326
Uniprot:Q8R326
Length = 523
Score = 158 (60.7 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 45/134 (33%), Positives = 66/134 (49%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR 82
L+VGNL D T+ D K LF ++G +V R F F+ + A+ AK L G+ +
Sbjct: 83 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILK 142
Query: 83 GNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD--GNTA---F 137
P++I FA L V +S VS E LE+ F +FG +E + D G F
Sbjct: 143 SRPLRIRFATHGAA---LTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGF 199
Query: 138 VEYSRLEDAAEALK 151
VE++ A +AL+
Sbjct: 200 VEFAAKPPARKALE 213
Score = 71 (30.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 37/136 (27%), Positives = 53/136 (38%)
Query: 309 GTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPN-NFAGHLQPADIRGPSMPMRSIGAHGGH 367
G GPR + GD P+ GP M N N G + P GP M GA
Sbjct: 394 GDMGPRGAINMGDAFSPAPAGTQGPPPMMGMNMNNRGTI-PGPPMGPGPAMGPEGAANMG 452
Query: 368 ETLLSGPDFKDFHS---MQDPNAKNLDPNWRRP-SPSPGIRTSPTQGIRQPLNHAPGSWD 423
++ PD H+ Q P ++ P R S +P +P G+ P++ PG +
Sbjct: 453 TPMI--PDNGAVHNDRFPQGPPSQMGSPMGNRTGSETP---QAPMSGVG-PVSGGPGGFG 506
Query: 424 V-YDANQFQRDSKRLR 438
F+ +KR R
Sbjct: 507 RGSQGGNFEGPNKRRR 522
Score = 38 (18.4 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 467 GLGSITGGPASGAFVNVQGRNRLSP 491
G+G ++GGP G QG N P
Sbjct: 494 GVGPVSGGPG-GFGRGSQGGNFEGP 517
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 174 (66.3 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 46/153 (30%), Positives = 84/153 (54%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQG---S 79
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHH 58
Query: 80 DFRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + EL F ++G + + +KD AFV
Sbjct: 59 KLHGVCINVEASKNKSKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171
R EDA EA++ ++ + G+++RV S+
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMRVQLSTSR 149
>WB|WBGene00004705 [details] [associations]
symbol:rsp-8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0000398 GeneTree:ENSGT00700000104309 HSSP:Q14103 KO:K12897
eggNOG:NOG297815 EMBL:Z92826 GeneID:176613 KEGG:cel:CELE_C18D11.4
CTD:176613 PIR:T19389 RefSeq:NP_001255142.1
ProteinModelPortal:Q9XTZ2 SMR:Q9XTZ2 DIP:DIP-26572N
MINT:MINT-1084022 STRING:Q9XTZ2 PaxDb:Q9XTZ2
EnsemblMetazoa:C18D11.4a.1 EnsemblMetazoa:C18D11.4a.2
UCSC:C18D11.4.1 WormBase:C18D11.4a InParanoid:Q9XTZ2 OMA:RENPQPS
NextBio:893300 Uniprot:Q9XTZ2
Length = 309
Score = 174 (66.3 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 37/89 (41%), Positives = 57/89 (64%)
Query: 9 NRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-TY-----SSRSFAFVY 62
N+ YD + PS L V NLS+ TT+ DL+++FG+FG ++K Y +SR F F+Y
Sbjct: 64 NQQYDRENPQPSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIY 123
Query: 63 FKRVEDAKAAKDALQGSDFRGNPIKIEFA 91
F +EDA AA+D L +D G+ I+++F+
Sbjct: 124 FNLIEDATAARDKLCNTDLDGHKIRVDFS 152
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 182 (69.1 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 64/216 (29%), Positives = 94/216 (43%)
Query: 23 LWVGNLSADTTDADLKELFGKFG-------ALDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++G LS DTT DLK+ F KFG LD +T SR F FV FK E D
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITG-RSRGFGFVLFKESESVDKVMDQ 155
Query: 76 LQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ G I + A+ K P K ++VGG+S +E++ E F FG +E + D
Sbjct: 156 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 214
Query: 133 GNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
T F+ + E + + K + + +++V + Q +++QW S
Sbjct: 215 NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW-GSRGGF 273
Query: 186 DGPIIGRGTGFSDN-HSAYKRSHPQS--SVGRNRDG 218
G GRG G S N + Y Q S G N G
Sbjct: 274 AGRARGRGGGPSQNWNQGYSNYWNQGYGSYGYNSQG 309
Score = 37 (18.1 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 834 YQFAAPSNSQKGYG 847
Y + SN Q GYG
Sbjct: 325 YGYGDYSNQQSGYG 338
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 182 (69.1 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 64/216 (29%), Positives = 94/216 (43%)
Query: 23 LWVGNLSADTTDADLKELFGKFG-------ALDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++G LS DTT DLK+ F KFG LD +T SR F FV FK E D
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITG-RSRGFGFVLFKESESVDKVMDQ 155
Query: 76 LQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ G I + A+ K P K ++VGG+S +E++ E F FG +E + D
Sbjct: 156 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 214
Query: 133 GNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
T F+ + E + + K + + +++V + Q +++QW S
Sbjct: 215 NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW-GSRGGF 273
Query: 186 DGPIIGRGTGFSDN-HSAYKRSHPQS--SVGRNRDG 218
G GRG G S N + Y Q S G N G
Sbjct: 274 AGRARGRGGGPSQNWNQGYSNYWNQGYGSYGYNSQG 309
Score = 37 (18.1 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 834 YQFAAPSNSQKGYG 847
Y + SN Q GYG
Sbjct: 325 YGYGDYSNQQSGYG 338
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 176 (67.0 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 48/163 (29%), Positives = 88/163 (53%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ 177
R EDA EA++ ++ + G+++ V LR+ P +Q
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQ 159
>UNIPROTKB|Q9BWF3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
"negative regulation of translation in response to stress"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
[GO:0002190 "cap-independent translational initiation"
evidence=IDA] [GO:0097167 "circadian regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
Ensembl:ENST00000396053 Ensembl:ENST00000398692
Ensembl:ENST00000408993 Ensembl:ENST00000409406
Ensembl:ENST00000483858 Ensembl:ENST00000530235
Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
Length = 364
Score = 176 (67.0 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 48/163 (29%), Positives = 88/163 (53%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ 177
R EDA EA++ ++ + G+++ V LR+ P +Q
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQ 159
>UNIPROTKB|Q4R979 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
binding" evidence=ISS] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
"entrainment of circadian clock by photoperiod" evidence=ISS]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISS] [GO:0097167 "circadian regulation of
translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
PRIDE:Q4R979 Uniprot:Q4R979
Length = 364
Score = 176 (67.0 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 48/163 (29%), Positives = 88/163 (53%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ 177
R EDA EA++ ++ + G+++ V LR+ P +Q
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQ 159
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 174 (66.3 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 62/208 (29%), Positives = 95/208 (45%)
Query: 5 PSKFNRA-YDDKEAPPSSN-LWVGNLSADTTDADLKELFGKFGALDKVT------TYSSR 56
PS+F+ D P S N +++G LS DT+ DL E +FG + T T SR
Sbjct: 33 PSRFSACPLDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSR 92
Query: 57 SFAFVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK---PSKHLWVGGISQTVSK 111
F FV FK DA + L+ + + G I + A+ K P K ++VGG+S S+
Sbjct: 93 GFGFVLFK---DAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 149
Query: 112 EELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGGEQLRV 165
E+++E F FG IE+ + D T F+ Y+ E + L++ QIG + +
Sbjct: 150 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEI 208
Query: 166 DFLRSQPSRREQWPNSHDARDGPIIGRG 193
+ + R+Q R GRG
Sbjct: 209 KVAQPKEVYRQQQQQQKGGRGAAAGGRG 236
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 174 (66.3 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 62/208 (29%), Positives = 95/208 (45%)
Query: 5 PSKFNRA-YDDKEAPPSSN-LWVGNLSADTTDADLKELFGKFGALDKVT------TYSSR 56
PS+F+ D P S N +++G LS DT+ DL E +FG + T T SR
Sbjct: 33 PSRFSACPLDPSSFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSR 92
Query: 57 SFAFVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK---PSKHLWVGGISQTVSK 111
F FV FK DA + L+ + + G I + A+ K P K ++VGG+S S+
Sbjct: 93 GFGFVLFK---DAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSE 149
Query: 112 EELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGGEQLRV 165
E+++E F FG IE+ + D T F+ Y+ E + L++ QIG + +
Sbjct: 150 EQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEI 208
Query: 166 DFLRSQPSRREQWPNSHDARDGPIIGRG 193
+ + R+Q R GRG
Sbjct: 209 KVAQPKEVYRQQQQQQKGGRGAAAGGRG 236
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 160 (61.4 bits), Expect = 4.9e-10, Sum P(3) = 4.9e-10
Identities = 45/172 (26%), Positives = 89/172 (51%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRS------FAFVYFKRVEDAKAAKD 74
++L+VG+L D T+A L E F G + + Y R+ +A V F+++EDA+ A D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 75 ALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129
+ +G P++I +++ P+ +++V + +++ + L + F FGNI K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKV 130
Query: 130 LKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
+ D N + FV + E+A A++ +NG + ++ V +S+ R+ +
Sbjct: 131 VCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAE 182
Score = 131 (51.2 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 70/287 (24%), Positives = 121/287 (42%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGAL--DKVTT--YSSRSFAFVYFKRVEDAKAAKDALQ 77
N++V NL L + F FG + KV S+ + FV+F+ E+A+ A + +
Sbjct: 100 NIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMN 159
Query: 78 G---SD---FRGN-----PIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIED 126
G +D F G + E AK ++++ + + + E L++ F +FG
Sbjct: 160 GMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALS 219
Query: 127 FKFLKD--GNT---AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNS 181
K + D G + FV + R EDA +A+ +NG+ + G+Q+ V R+Q
Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVG--RAQKK-------- 269
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQ-SSVGRNRDGPPSKI-LWVGYPPSVQMDEQML 239
+ R T K+ P+ V ++R + L+V +D++ L
Sbjct: 270 --------VERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDD-GIDDERL 320
Query: 240 HNAMILFGEIERIK----SYPSRNYSFVEFRSVDEARRAKEGLQGRL 282
FG I K S+ + FV F S +EA +A + GR+
Sbjct: 321 RKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 367
Score = 121 (47.7 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDAKAAKDA 75
+N+++ NL D D L++LF +FG AL KV T S + F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDE 250
Query: 76 LQGSDFRGNPIKI 88
+ G D G I +
Sbjct: 251 MNGKDLNGKQIYV 263
Score = 85 (35.0 bits), Expect = 6.7e-08, Sum P(3) = 6.7e-08
Identities = 24/91 (26%), Positives = 42/91 (46%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K +G + FV +S E+A +A+ +N
Sbjct: 305 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMN 364
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 365 GRIVATKPLYVALAQRKEERQAHLSNQYMQR 395
Score = 65 (27.9 bits), Expect = 4.9e-10, Sum P(3) = 4.9e-10
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 234 MDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRI 288
MD++ L + FG +K S S+ + FV F ++AR+A + + G+ N +I
Sbjct: 202 MDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQI 261
Query: 289 TI 290
+
Sbjct: 262 YV 263
Score = 49 (22.3 bits), Expect = 4.9e-10, Sum P(3) = 4.9e-10
Identities = 24/93 (25%), Positives = 33/93 (35%)
Query: 697 SSSMDYGSNNAAAISQAGVKLTPELIATLTSLIPATKSAEVAPGSSSARPLLAEPHVQSI 756
S++M S + SQA T + PA S AP +AR + + +
Sbjct: 468 SNTMPSFSTSGPTSSQAVRHRTASTSTQMMGPHPAAASTAAAP---AARTVTQYKYTAGV 524
Query: 757 EQLGNHYNPQAQSLTHHYA-SMSSTPSHSAQML 788
H N Q Q T A S S + ML
Sbjct: 525 RNPPQHLNTQPQVTTQRSAVSAQGKESLTVSML 557
Score = 46 (21.3 bits), Expect = 9.8e-10, Sum P(3) = 9.8e-10
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 294 SSELAPGKDYPGSYSGTKGPRSEMFFGDQIRPSQLDMLGPN 334
SS + P P S+S T GP S + + M+GP+
Sbjct: 462 SSAIHPSNTMP-SFS-TSGPTSSQAVRHRTASTSTQMMGPH 500
>MGI|MGI:1891706 [details] [associations]
symbol:Spen "SPEN homolog, transcriptional regulator
(Drosophila)" species:10090 "Mus musculus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001085 "RNA polymerase II transcription factor binding"
evidence=ISO] [GO:0001191 "RNA polymerase II transcription factor
binding transcription factor activity involved in negative
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003714 "transcription corepressor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007219 "Notch signaling pathway" evidence=IEA]
[GO:0017053 "transcriptional repressor complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0050769 "positive
regulation of neurogenesis" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1891706 GO:GO:0005634 GO:GO:0003714 GO:GO:0045892
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007219
GO:GO:0003700 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
eggNOG:NOG12793 InterPro:IPR012921 Pfam:PF07744 PROSITE:PS50917
Gene3D:2.40.290.10 InterPro:IPR016194 SUPFAM:SSF100939 CTD:23013
HOGENOM:HOG000231295 HOVERGEN:HBG045583 OrthoDB:EOG4JM7NS
ChiTaRS:SPEN InterPro:IPR010912 EMBL:BY726481 EMBL:AF156529
EMBL:AB055980 EMBL:Z78160 EMBL:AK122402 IPI:IPI00378158
IPI:IPI00378159 IPI:IPI00605780 RefSeq:NP_062737.2
UniGene:Mm.299906 ProteinModelPortal:Q62504 SMR:Q62504
STRING:Q62504 PhosphoSite:Q62504 PaxDb:Q62504 PRIDE:Q62504
GeneID:56381 KEGG:mmu:56381 NextBio:312464 Genevestigator:Q62504
GermOnline:ENSMUSG00000040761 Uniprot:Q62504
Length = 3644
Score = 198 (74.8 bits), Expect = 5.5e-10, Sum P(3) = 5.5e-10
Identities = 47/158 (29%), Positives = 79/158 (50%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL---DKVTTYSSRSFAFVYFKRVEDA 69
D+ + L++GNL TT DL+ +F +FG + D +AF+ + +
Sbjct: 431 DEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASV 490
Query: 70 KAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129
A + G N +K+ F + + P+ +W+ G+S VS + L F ++G + F
Sbjct: 491 CKAIKKMDGEYLGNNRLKLGFGK-SMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVF 549
Query: 130 LKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167
+ A V YS +EDA A+K GR+IGG +++VDF
Sbjct: 550 DRLKGMALVLYSEIEDAQAAVKETKGRKIGGNKIKVDF 587
Score = 56 (24.8 bits), Expect = 5.8e-09, Sum P(4) = 5.8e-09
Identities = 29/123 (23%), Positives = 51/123 (41%)
Query: 520 GTPVCRARCVPFGKGIES-ELPEVVNCSARTGLDMLAKHYAEAIGFDIVFFLPDSED--D 576
G V R +P +G + + + A + L+ +A+ + ++ LP D D
Sbjct: 3509 GNNVLAHRSLPLSEGGPPLRIAQRMRLEA-SQLEGVARRMTVETDYCLLLALPCGRDQED 3567
Query: 577 FASYTE-----FLRYLGSKNRAGVAKFDD-GTT-----LFLVPPSDFLSKVLKVVGPERL 625
S TE F+ YL +K AG+ + G+ L + PP +F L + P+ L
Sbjct: 3568 VVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLSRLAPDLL 3627
Query: 626 YGV 628
+
Sbjct: 3628 ASI 3630
Score = 55 (24.4 bits), Expect = 5.5e-10, Sum P(3) = 5.5e-10
Identities = 41/151 (27%), Positives = 58/151 (38%)
Query: 614 SKVLKVVGPERLYGVVLKLPQQAMVPPQTVDKQNIPP--PHAEYGLTRPKE--EHVLP-V 668
+K V PE G L+ Q A P T Q IPP P L++P + +P V
Sbjct: 3311 TKTSAQVPPE---GEPLQSTQSAQPAPSTQATQPIPPAPPCQPSQLSQPAQPPSGKIPQV 3367
Query: 669 DYNRFSHDDSKV-QSKMHFPHASEPLIAHSSSMDYGSNNA--AAISQAGVKLTPELIATL 725
V Q+++ + P H+ A A S V + P+L + L
Sbjct: 3368 SQEAKGTQTGGVEQTRLPAIPTNRPSEPHAQLQRAPVETAQPAHPSPVSVSMKPDLPSPL 3427
Query: 726 TSLIPATKSAEVAPGSS--SARPLLAEPHVQ 754
+S A K P +S S P LA PH +
Sbjct: 3428 SSQA-APKQPLFVPANSGPSTPPGLALPHAE 3457
Score = 51 (23.0 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 32/149 (21%), Positives = 57/149 (38%)
Query: 632 LPQQAMVPPQTVDKQNIPPPHAEYGL--TRPKEE-HVLP------VDYN-RFSHDDSKVQ 681
+P A VP PPPH E + P + LP V + + H ++
Sbjct: 3217 VPAPAPVPVPVPVPTPAPPPHGEARILTVTPSSQLQGLPLTPPVVVTHGVQIVHSSGELF 3276
Query: 682 SKMHFP-----HASEPLIAHSSSMDYGSNNAAAISQAGVKLTPELIATLTSLIPATKSAE 736
+ + HA + H+ S + A+ ++ ++ PE + +T+SA+
Sbjct: 3277 QEYRYGDVRTYHAPAQQLTHTQFPVASSISLASRTKTSAQVPPE-----GEPLQSTQSAQ 3331
Query: 737 VAPGSSSARPLLAEPHVQSIEQLGNHYNP 765
AP + + +P+ P Q QL P
Sbjct: 3332 PAPSTQATQPIPPAPPCQP-SQLSQPAQP 3359
Score = 45 (20.9 bits), Expect = 5.5e-10, Sum P(3) = 5.5e-10
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 397 PSPSPGIRTSPTQGIRQPLNHA 418
PS PG +T P +G+ L+ A
Sbjct: 2252 PSVPPGSQTHPREGMEPGLHEA 2273
Score = 45 (20.9 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 727 SLIPATKSAEVAPGSSSARPLLAEP 751
+L P TK++++ SS+ R +L +P
Sbjct: 2515 ALPPDTKASDMDTSSSTLRKILMDP 2539
Score = 44 (20.5 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 839 PSNSQKGYGMMQGTEASTLYGSSVFQQPNNPTAVSNQ--VNLSQPQNVMTVSVD-KVNLE 895
P SQ+ G G T + +P+ P A + V +QP + VSV K +L
Sbjct: 3365 PQVSQEAKGTQTGGVEQTRLPAIPTNRPSEPHAQLQRAPVETAQPAHPSPVSVSMKPDLP 3424
Query: 896 HP 897
P
Sbjct: 3425 SP 3426
Score = 44 (20.5 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 45/181 (24%), Positives = 68/181 (37%)
Query: 608 PPSDFLSKV-LKVVGPERLYGVVLKLPQQAMVPPQTVDKQNIPPPHAEYGLTRPKEEHV- 665
P S L V + VV PE K + A P +K P P +E T+ E V
Sbjct: 1649 PVSAGLPAVTITVVTPEPASSAPEKAEEAAEAPSPAGEKPAEPAPVSEE--TKLVSEPVS 1706
Query: 666 LPVDYNRFSHDDSKVQSKMHFPHASEPLIAHSSSMDYGSNNAAAISQAGVKLTPELIATL 725
+PV+ R S S+ A+ +A S+ + + +A A LTP T
Sbjct: 1707 VPVEQPRQSDVPPGEDSRDSQDSAA---LAPSAPQESAATDAVPCVNAE-PLTP---GTT 1759
Query: 726 TSLIPATKSAEVAPGSSSARPLLAEPHVQSIEQLGNHYNPQAQSLTHHYASMSSTPSHSA 785
S + ++ V P SS +PL + G P T A+ ++ + A
Sbjct: 1760 VSQVESS----VDPKPSSPQPLSKLTQRSEEAEEGKVEKPDTTPSTEPDATQNAGVASEA 1815
Query: 786 Q 786
Q
Sbjct: 1816 Q 1816
Score = 41 (19.5 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 320 GDQIRPSQLDMLGPN-QSMQPNNFAGHLQPADIRGPSMP 357
G+ ++ +Q P+ Q+ QP A QP+ + P+ P
Sbjct: 3321 GEPLQSTQSAQPAPSTQATQPIPPAPPCQPSQLSQPAQP 3359
Score = 41 (19.5 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 719 PELIATLTSLIPATKSAEVAPGSSSARPLLAEPHVQSIEQLG 760
PE A +++ +PA V P +S+ P AE ++ G
Sbjct: 1644 PEPKAPVSAGLPAVTITVVTPEPASSAPEKAEEAAEAPSPAG 1685
Score = 39 (18.8 bits), Expect = 4.4e-08, Sum P(4) = 4.4e-08
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 849 MQGTEASTLYGSSVFQQPNNPTAVSNQVNLSQPQNVMTVSVDKVNLE 895
+Q T+++ S+ QP P LSQP + + +V+ E
Sbjct: 3324 LQSTQSAQPAPSTQATQPIPPAPPCQPSQLSQPAQPPSGKIPQVSQE 3370
Score = 39 (18.8 bits), Expect = 3.1e-07, Sum P(5) = 3.1e-07
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 634 QQAMVPPQTVDKQNIPP 650
Q+A+VPP T ++ PP
Sbjct: 1957 QEAVVPP-TTPRRGRPP 1972
Score = 37 (18.1 bits), Expect = 5.8e-09, Sum P(4) = 5.8e-09
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 716 KLTPELIATLTSLIP 730
+L P+L+A+++++ P
Sbjct: 3621 RLAPDLLASISNISP 3635
Score = 37 (18.1 bits), Expect = 1.8e-08, Sum P(4) = 1.8e-08
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 861 SVFQQPNNPTAVSNQVNLSQP 881
SV +P+ P+ +S+Q QP
Sbjct: 3416 SVSMKPDLPSPLSSQAAPKQP 3436
Score = 37 (18.1 bits), Expect = 3.5e-08, Sum P(4) = 3.5e-08
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 372 SGPDFKDFHSMQDPN-----AKNLDPNWRRPSPSP 401
SG D +DF+ M A++ +W + SP
Sbjct: 603 SGQDMRDFYEMLTERRAGQMAQSKHEDWSADAQSP 637
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 178 (67.7 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 53/195 (27%), Positives = 101/195 (51%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA++
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 81 -FRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ------WPNSHDARDGP 188
R EDA EA++ ++ + G+++ V LR+ P +Q H +++ P
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP 176
Query: 189 I--IGRGTGFSDNHS 201
+ GR F++ ++
Sbjct: 177 VDRTGRVADFTEQYN 191
Score = 40 (19.1 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 452 SRKIDDHGLVLDQSYGLGSITGGPASGAFVNVQGRNRLSPV---ASKVTA-G-GFGRNP 505
S +D + L Q+ G + + A+ A + GR+R SP+ A+ + A G G+G P
Sbjct: 265 STSVDPYDRHLLQNSGSAATSAAMAAAASSSYYGRDR-SPLRRNAAVLPAVGEGYGYGP 322
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 126 (49.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 43/167 (25%), Positives = 80/167 (47%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVEDAKAAKDA 75
+L+VG+L + TD+ L + F + + V T +S + +V + +DA+ A
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 76 LQGSDFRGNPIKIEFA-RPAKPSK----HLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
L S G I+I ++ R + + +L+V + ++V + L E F G I K
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 131 KD--GNT---AFVEYSRLEDAAEALKNINGRQIGGEQLRVD-FLRSQ 171
D G + FV++ + A A++ +NG+ + +Q+ V FLR +
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKE 213
Score = 116 (45.9 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTY-----SSRSFAFVYFKRVEDAKAAKDA 75
+N++V NLS TTD +LK FG++G++ SR F FV F+ EDA A +A
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEA 284
Query: 76 LQGSDF 81
L G F
Sbjct: 285 LNGKKF 290
Score = 115 (45.5 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGN-----TAFVEYSRLEDAAEALKNI 153
+L+V + TV+ E+L E F +FG I K ++D + + FV +S +A+ L +
Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEM 388
Query: 154 NGRQIGGEQLRVDFLRSQPSRR 175
NG+ +GG+ L V + + RR
Sbjct: 389 NGKMVGGKPLYVALAQRKEERR 410
Score = 66 (28.3 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 257 SRNYSFVEFRSVDEARRAKEGLQGRLFND 285
SR + FV F + ++A RA E L G+ F+D
Sbjct: 264 SRCFGFVNFENPEDAARAVEALNGKKFDD 292
>UNIPROTKB|Q1LZD9 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0042382
"paraspeckles" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0016363 GO:GO:0042382
InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 HOGENOM:HOG000231095
HOVERGEN:HBG009801 EMBL:BC116062 IPI:IPI00706558
RefSeq:NP_001068745.1 UniGene:Bt.55499 ProteinModelPortal:Q1LZD9
SMR:Q1LZD9 PRIDE:Q1LZD9 Ensembl:ENSBTAT00000005134 GeneID:506696
KEGG:bta:506696 CTD:55269 InParanoid:Q1LZD9 OMA:DNREQEM
OrthoDB:EOG444KKN NextBio:20867718 Uniprot:Q1LZD9
Length = 520
Score = 157 (60.3 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 45/134 (33%), Positives = 66/134 (49%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR 82
L+VGNL D T+ D K LF ++G +V R F F+ + A+ AK L G+ +
Sbjct: 81 LFVGNLPTDITEDDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILK 140
Query: 83 GNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD--GNTA---F 137
P++I FA L V +S VS E LE+ F +FG +E + D G F
Sbjct: 141 SRPLRIRFATHGAA---LTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGF 197
Query: 138 VEYSRLEDAAEALK 151
VE++ A +AL+
Sbjct: 198 VEFAAKPPARKALE 211
Score = 69 (29.3 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 39/137 (28%), Positives = 55/137 (40%)
Query: 309 GTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPN-NFAGHLQPADIRGPSMPMRSIGAHGGH 367
G GPR + GD P+ GP M N N G + P GP M GA
Sbjct: 391 GDMGPRGAINMGDAFSPAPAGNQGPPAMMGMNMNNRGTI-PGPPMGPGPAMGPEGAANMG 449
Query: 368 ETLLSGPDFKDFHS---MQDPNAKNLDPNWRRP-SPSPGIRTSPTQGIRQPLNHAPGSWD 423
++ PD H+ Q P ++ P R S +P +P G+ P++ PG +
Sbjct: 450 TPMM--PDNGAVHNDRFPQGPPSQMGSPMGSRTGSETP---QAPMSGVG-PVSGGPGGFG 503
Query: 424 --VYDANQFQRDSKRLR 438
AN F+ +KR R
Sbjct: 504 RGSQGAN-FEGPNKRRR 519
Score = 39 (18.8 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 467 GLGSITGGPASGAFVNVQGRNRLSP 491
G+G ++GGP G QG N P
Sbjct: 491 GVGPVSGGPG-GFGRGSQGANFEGP 514
>UNIPROTKB|C9IZL7 [details] [associations]
symbol:NONO "Non-POU domain-containing octamer-binding
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590762 HGNC:HGNC:7871 HOGENOM:HOG000231095
IPI:IPI00645966 ProteinModelPortal:C9IZL7 SMR:C9IZL7 STRING:C9IZL7
PRIDE:C9IZL7 Ensembl:ENST00000454976 ArrayExpress:C9IZL7
Bgee:C9IZL7 Uniprot:C9IZL7
Length = 207
Score = 154 (59.3 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 46/142 (32%), Positives = 69/142 (48%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAK 73
+K S L+VGNL D T+ ++++LF K+G +V + + F F+ + A+ AK
Sbjct: 67 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAK 126
Query: 74 DALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD- 132
L RG +++ FA S L V + Q VS E LEE F FG +E + D
Sbjct: 127 VELDNMPLRGKQLRVRFACH---SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDD 183
Query: 133 -GNTA---FVEYSRLEDAAEAL 150
G + VE+S A +AL
Sbjct: 184 RGRPSGKGIVEFSGKPAARKAL 205
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 174 (66.3 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 70/278 (25%), Positives = 112/278 (40%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK----VTTYSSRSFAFVYFKRVEDA 69
+ E P + L+VGNLS D T+A + +LF + G + T + + FV F A
Sbjct: 2 EDEMPKT--LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHA 59
Query: 70 KAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKF-GNIEDFK 128
AA A+ G G +K+ +A PS S VS + ++ F F G++
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWA--TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEI 117
Query: 129 FLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQL----RVDFLRSQPSRREQWPNSHDA 184
+D AF + R+ DA G+ G + + D + QW
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 185 RDGPIIGRGTGFSDNHSAYKRSHPQSSVGR--NRDGPPSKILWVGYPPSVQMDEQMLHNA 242
R + S Y+ + Q S N+ P + ++ G S + EQ++
Sbjct: 178 RTNWATRKPPA---PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTS-GLTEQLMRQT 233
Query: 243 MILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQG 280
FG+I I+ +P + YSFV F S + A A + G
Sbjct: 234 FSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 271
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 174 (66.3 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 70/278 (25%), Positives = 112/278 (40%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK----VTTYSSRSFAFVYFKRVEDA 69
+ E P + L+VGNLS D T+A + +LF + G + T + + FV F A
Sbjct: 2 EDEMPKT--LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHA 59
Query: 70 KAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKF-GNIEDFK 128
AA A+ G G +K+ +A PS S VS + ++ F F G++
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWA--TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEI 117
Query: 129 FLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQL----RVDFLRSQPSRREQWPNSHDA 184
+D AF + R+ DA G+ G + + D + QW
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 185 RDGPIIGRGTGFSDNHSAYKRSHPQSSVGR--NRDGPPSKILWVGYPPSVQMDEQMLHNA 242
R + S Y+ + Q S N+ P + ++ G S + EQ++
Sbjct: 178 RTNWATRKPPA---PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTS-GLTEQLMRQT 233
Query: 243 MILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQG 280
FG+I I+ +P + YSFV F S + A A + G
Sbjct: 234 FSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 271
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 171 (65.3 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 58/198 (29%), Positives = 87/198 (43%)
Query: 23 LWVGNLSADTTDADLKELFGKFG-------ALDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++G LS DTT DLK+ F KFG LD +T SR F FV FK E D
Sbjct: 97 MFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITG-RSRGFGFVLFKESESVDKVMDQ 155
Query: 76 LQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ G I + A+ K P K ++VGG+S +E++ E F FG +E + D
Sbjct: 156 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 214
Query: 133 GNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
T F+ + E + + K + + +++V + Q +++QW S
Sbjct: 215 NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW-GSRGGF 273
Query: 186 DGPIIGRGTGFSDNHSAY 203
G GRG D S Y
Sbjct: 274 AGRARGRG---GDQQSGY 288
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 171 (65.3 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 58/198 (29%), Positives = 87/198 (43%)
Query: 23 LWVGNLSADTTDADLKELFGKFGA-------LDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++G LS DTT DLK+ F KFG LD +T SR F FV FK E D
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG-RSRGFGFVLFKESESVDKVMDQ 157
Query: 76 LQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ G I + A+ K P K ++VGG+S +E++ E F FG +E + D
Sbjct: 158 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
Query: 133 GNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
T F+ + E + + K + + +++V + Q +++QW S
Sbjct: 217 NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW-GSRGGF 275
Query: 186 DGPIIGRGTGFSDNHSAY 203
G GRG D S Y
Sbjct: 276 AGRARGRG---GDQQSGY 290
>UNIPROTKB|E1BNF6 [details] [associations]
symbol:SPEN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:DAAA02043252 IPI:IPI00923891 Ensembl:ENSBTAT00000061139
Uniprot:E1BNF6
Length = 3653
Score = 186 (70.5 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 45/158 (28%), Positives = 78/158 (49%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL---DKVTTYSSRSFAFVYFKRVEDA 69
D+ + L++GNL TT DL+ +F +FG + D +AF+ + +
Sbjct: 431 DEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASV 490
Query: 70 KAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129
A + G N +K+ F + + P+ +W+ G+S VS + L F ++G + F
Sbjct: 491 CKAIKKMDGEYLGNNRLKLGFGK-SMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVF 549
Query: 130 LKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167
+ A V Y+ +E A A+K GR+IGG +++VDF
Sbjct: 550 DRLKGMALVLYNEIEYAQAAVKETKGRKIGGNKIKVDF 587
Score = 58 (25.5 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 31/127 (24%), Positives = 45/127 (35%)
Query: 633 PQQAMVPPQTVDKQNIPPPHAEYGLTRPKEEHVLPVDYNRFSHDDSKVQSKMHFPHASEP 692
P Q P Q V P L++P + PV Q ++ A+ P
Sbjct: 3342 PAQPTQPLQPVQSAQPAQPAQPSQLSQPPSSKMPPVSQEAKGTQTGVEQPRLPNVSANRP 3401
Query: 693 LIAHSSSM--DYGSNNAAAISQAGVKLTPELIATLTSLIPATKSAEVAPGSS--SARPLL 748
H+ ++ + S V L P+L L + A K P SS S P L
Sbjct: 3402 AEPHTQVQRAQAETSQTSYPSPVCVSLKPDLPTPLPAQA-APKQPLFVPTSSGPSTPPGL 3460
Query: 749 AEPHVQS 755
A PH ++
Sbjct: 3461 ALPHTEA 3467
Score = 56 (24.8 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 29/123 (23%), Positives = 51/123 (41%)
Query: 520 GTPVCRARCVPFGKGIES-ELPEVVNCSARTGLDMLAKHYAEAIGFDIVFFLPDSED--D 576
G V R +P +G + + + A + L+ +A+ + ++ LP D D
Sbjct: 3518 GNNVLAHRSLPLSEGGPPLRIAQRMRLEA-SQLEGVARRMTVETDYCLLLALPCGRDQED 3576
Query: 577 FASYTE-----FLRYLGSKNRAGVAKFDD-GTT-----LFLVPPSDFLSKVLKVVGPERL 625
S TE F+ YL +K AG+ + G+ L + PP +F L + P+ L
Sbjct: 3577 VVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLSRLAPDLL 3636
Query: 626 YGV 628
+
Sbjct: 3637 ASI 3639
Score = 49 (22.3 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 305 GSYSGTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPNNFAGHLQPADIRGPSMPMRS 360
G S TK P G+ ++P+Q P Q +QP A QPA S P S
Sbjct: 3322 GLPSRTKVPTQGPPEGEPLQPAQ-----PTQPLQPVQSAQPAQPAQPSQLSQPPSS 3372
Score = 47 (21.6 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 727 SLIPATKSAEVAPGSSSARPLLAEP 751
+L P TK++++ SS+ R +L +P
Sbjct: 2514 ALPPDTKASDIDTSSSTLRKILMDP 2538
Score = 46 (21.3 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 44/180 (24%), Positives = 67/180 (37%)
Query: 633 PQQAMVPPQTVDKQNIPPPHAEY-GLTRPKEEHVLP-VDYNRFSHDDSKVQ-SKMHFPHA 689
P Q PP + +PP E G E+ LP V NR + ++VQ ++
Sbjct: 3363 PSQLSQPPSS----KMPPVSQEAKGTQTGVEQPRLPNVSANRPAEPHTQVQRAQAETSQT 3418
Query: 690 SEPL-IAHSSSMDYGSNNAAAISQAGVKLTPELIATLTS---LIPATKSAEVAPGSSSAR 745
S P + S D + A + P T +P T+ A + P S+
Sbjct: 3419 SYPSPVCVSLKPDLPTPLPAQAAPKQPLFVPTSSGPSTPPGLALPHTE-APLTPKQDSSP 3477
Query: 746 PLLAEPHVQSIEQLGNHYNPQAQSLTHHYASMSSTPSHSAQMLLGNNQLQESTASLSQQG 805
L ++ V + QL Y Q L A + T + + GNN L + LS+ G
Sbjct: 3478 HLTSQRPVDMV-QLLKKYPIVWQGLL---ALKNDTAAVQLHFVSGNNVLAHRSLPLSEGG 3533
Score = 41 (19.5 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 639 PPQTVDKQNIPPPHA--EYGLTR-PKEEHVLPVDYNRFSHDDSKVQSKMHFPHASEPLIA 695
P +T ++++P + E T+ P P+ HD+ + + K+H S+P+
Sbjct: 2399 PSKTPSREDLPQESSMDEETPTKAPALPDPTPLSQPAPVHDEPQARFKVHSIIESDPVTP 2458
Query: 696 HSSS 699
S S
Sbjct: 2459 PSDS 2462
Score = 40 (19.1 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 639 PPQTVDKQNIPPPHAEYGLTRPKEEHV 665
PP + Q PPP E G+ E V
Sbjct: 2242 PPYPAESQTDPPPPEE-GMEPETNEAV 2267
Score = 39 (18.8 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 708 AAISQAGVKLTPELIATLTSLIPATKSAEVAPGSSSARPLLA---EPHV-QSIEQL 759
A+ SQ + + PE +T T P T+ E A +P LA EP+ Q E +
Sbjct: 1742 ASFSQVEISVDPEPNSTQTLPKP-TQKPEEADEPQVEKPDLAANVEPNTSQKTEDV 1796
Score = 37 (18.1 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 716 KLTPELIATLTSLIP 730
+L P+L+A+++++ P
Sbjct: 3630 RLAPDLLASISNISP 3644
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 179 (68.1 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 63/216 (29%), Positives = 94/216 (43%)
Query: 23 LWVGNLSADTTDADLKELFGKFGA-------LDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++G LS DTT DLK+ F KFG LD +T SR F FV FK E D
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG-RSRGFGFVLFKESESVDKVMDQ 157
Query: 76 LQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ G I + A+ K P K ++VGG+S +E++ E F FG +E + D
Sbjct: 158 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
Query: 133 GNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
T F+ + E + + K + + +++V + Q +++QW S
Sbjct: 217 NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW-GSRGGF 275
Query: 186 DGPIIGRGTGFSDN-HSAYKRSHPQS--SVGRNRDG 218
G GRG G S N + Y Q + G N G
Sbjct: 276 AGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQG 311
Score = 37 (18.1 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 834 YQFAAPSNSQKGYG 847
Y + SN Q GYG
Sbjct: 327 YGYGDYSNQQSGYG 340
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 179 (68.1 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 63/216 (29%), Positives = 94/216 (43%)
Query: 23 LWVGNLSADTTDADLKELFGKFGA-------LDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++G LS DTT DLK+ F KFG LD +T SR F FV FK E D
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG-RSRGFGFVLFKESESVDKVMDQ 157
Query: 76 LQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ G I + A+ K P K ++VGG+S +E++ E F FG +E + D
Sbjct: 158 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
Query: 133 GNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
T F+ + E + + K + + +++V + Q +++QW S
Sbjct: 217 NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW-GSRGGF 275
Query: 186 DGPIIGRGTGFSDN-HSAYKRSHPQS--SVGRNRDG 218
G GRG G S N + Y Q + G N G
Sbjct: 276 AGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQG 311
Score = 37 (18.1 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 834 YQFAAPSNSQKGYG 847
Y + SN Q GYG
Sbjct: 327 YGYGDYSNQQSGYG 340
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 179 (68.1 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 63/216 (29%), Positives = 94/216 (43%)
Query: 23 LWVGNLSADTTDADLKELFGKFGA-------LDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++G LS DTT DLK+ F KFG LD +T SR F FV FK E D
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG-RSRGFGFVLFKESESVDKVMDQ 157
Query: 76 LQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ G I + A+ K P K ++VGG+S +E++ E F FG +E + D
Sbjct: 158 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
Query: 133 GNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
T F+ + E + + K + + +++V + Q +++QW S
Sbjct: 217 NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW-GSRGGF 275
Query: 186 DGPIIGRGTGFSDN-HSAYKRSHPQS--SVGRNRDG 218
G GRG G S N + Y Q + G N G
Sbjct: 276 AGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQG 311
Score = 37 (18.1 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 834 YQFAAPSNSQKGYG 847
Y + SN Q GYG
Sbjct: 327 YGYGDYSNQQSGYG 340
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 179 (68.1 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 63/216 (29%), Positives = 94/216 (43%)
Query: 23 LWVGNLSADTTDADLKELFGKFGA-------LDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++G LS DTT DLK+ F KFG LD +T SR F FV FK E D
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG-RSRGFGFVLFKESESVDKVMDQ 157
Query: 76 LQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ G I + A+ K P K ++VGG+S +E++ E F FG +E + D
Sbjct: 158 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
Query: 133 GNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
T F+ + E + + K + + +++V + Q +++QW S
Sbjct: 217 NKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQW-GSRGGF 275
Query: 186 DGPIIGRGTGFSDN-HSAYKRSHPQS--SVGRNRDG 218
G GRG G S N + Y Q + G N G
Sbjct: 276 AGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQG 311
Score = 37 (18.1 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 834 YQFAAPSNSQKGYG 847
Y + SN Q GYG
Sbjct: 327 YGYGDYSNQQSGYG 340
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 172 (65.6 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 50/175 (28%), Positives = 91/175 (52%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRV 66
D+ +NL V L + + +L+ LF G + DKV +S + FV +
Sbjct: 27 DELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSL-GYGFVNYLNP 85
Query: 67 EDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGN 123
DA+ A L G + IK+ +ARP+ S +L++ G+ +T++++++EE F ++G
Sbjct: 86 NDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGR 145
Query: 124 IEDFKFLKD---G---NTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRS 170
I + + L D G AF+ + + +A +A+K++NG++ G EQ+ V F S
Sbjct: 146 IINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFAAS 200
Score = 83 (34.3 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 22/78 (28%), Positives = 42/78 (53%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNI 153
+++ + Q + L + F FG + + K ++D NT FV + E+AA A+ ++
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 154 NGRQIGGEQLRVDFLRSQ 171
NG ++G + L+V F S+
Sbjct: 320 NGYRLGDKILQVSFKTSK 337
Score = 83 (34.3 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 30/101 (29%), Positives = 49/101 (48%)
Query: 7 KFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL--DKVTTYS----SRSFAF 60
K + A ++ +NL++ L T D++E+FG++G + +V SR AF
Sbjct: 106 KVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAF 165
Query: 61 VYF-KRVEDAKAAKDALQGSDFRG--NPIKIEFARPAKPSK 98
+ F KR E A KD L G G + ++FA A P++
Sbjct: 166 IRFDKRAEAEDAIKD-LNGQKPPGAAEQMTVKFA--ASPNQ 203
>TAIR|locus:2013583 [details] [associations]
symbol:ML5 "MEI2-like protein 5" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0045836 "positive regulation of meiosis"
evidence=IMP] [GO:0045927 "positive regulation of growth"
evidence=IMP] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0007126 GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG262869
HOGENOM:HOG000030212 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AC068667 EMBL:AY062613 EMBL:AY070368 EMBL:AY091327
EMBL:AK230306 IPI:IPI00540335 PIR:F86416 RefSeq:NP_174233.2
RefSeq:NP_849727.1 UniGene:At.27439 HSSP:P19339
ProteinModelPortal:Q8VWF5 SMR:Q8VWF5 PaxDb:Q8VWF5 PRIDE:Q8VWF5
EnsemblPlants:AT1G29400.1 EnsemblPlants:AT1G29400.2 GeneID:839816
KEGG:ath:AT1G29400 TAIR:At1g29400 InParanoid:Q8VWF5 OMA:SPMANSP
PhylomeDB:Q8VWF5 ProtClustDB:CLSN2680301 Genevestigator:Q8VWF5
Uniprot:Q8VWF5
Length = 800
Score = 149 (57.5 bits), Expect = 9.9e-10, Sum P(4) = 9.9e-10
Identities = 45/166 (27%), Positives = 83/166 (50%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKV-TTYSSRSFAFVYFKRVEDAKAAKDALQ 77
PS L+V N++++ D++L LF ++G + + TT R F + + + A+ A +LQ
Sbjct: 166 PSRTLFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQ 225
Query: 78 GSDFRGNPIKIEFARPA-KPSKH------LWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
R + I F+ P PS+ L V + ++S ++L F G I++ +
Sbjct: 226 NKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRET 285
Query: 131 KDG-NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRR 175
+ FVE+ + A ALK +N +I G++++V+ R +RR
Sbjct: 286 PHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSRPGGARR 331
Score = 97 (39.2 bits), Expect = 0.00023, Sum P(4) = 0.00023
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVT-TYSSRSFAFVYFKRVEDAKAAKDALQGSDF 81
L V NL ++ DL +FG G + ++ T R FV F V A+AA AL +
Sbjct: 255 LVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEI 314
Query: 82 RGNPIKIEFARPAKPSKHLWVGGISQTVSKEEL 114
G IK+E +RP + L + ++Q + ++L
Sbjct: 315 AGKRIKVEPSRPGGARRSLMLQ-LNQDLENDDL 346
Score = 88 (36.0 bits), Expect = 9.9e-10, Sum P(4) = 9.9e-10
Identities = 35/136 (25%), Positives = 51/136 (37%)
Query: 169 RSQPSRREQWPNSHDARD--GPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWV 226
RS+PS W S + R F H RSH VG G P + +
Sbjct: 475 RSEPSSSSVWSTSSTGNPLFSTRVDRSVPFPHQHQNQSRSHHHFHVGSAPSGVPLEKHF- 533
Query: 227 GYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQG-RLFND 285
G+ P D + N + L G + S + ++ A+ G R+ +
Sbjct: 534 GFVPESSKDALFM-NTVGLQGMSGMGLNGGSFSSKMANNGIINSGSMAENGFSSYRMMSS 592
Query: 286 PRITIMFSSSELAPGK 301
PR + MF SS L PG+
Sbjct: 593 PRFSPMFLSSGLNPGR 608
Score = 53 (23.7 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 734 SAEVAPGSSSARPLLAEPHVQSIEQLGNHYNPQAQSLTHHYASMSSTPS 782
S+ V SS+ PL + +S+ H N QS +HH+ + S PS
Sbjct: 480 SSSVWSTSSTGNPLFSTRVDRSVPFPHQHQN---QSRSHHHFHVGSAPS 525
Score = 43 (20.2 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 24/109 (22%), Positives = 35/109 (32%)
Query: 773 HYASMSSTPSHSAQMLLGNNQLQESTASLSQQGMVYSRPLPNFSIXXXXXXXXXXXXXXX 832
HY M +P ++ + GN L Q V SR P F +
Sbjct: 347 HYLPMIGSPMANSPPMQGNWPLNSPVEGSPLQS-VLSRS-PVFGLSPTRNGHLSGLASAL 404
Query: 833 XYQFAAPSNSQKGYGMMQGTEASTLYGSSVFQQPNNPTAVSNQVNLSQP 881
Q PS+ G Q S +FQ+P + ++ S P
Sbjct: 405 NSQ--GPSSKLAPIGRGQIGSNGFQQSSHLFQEPKMDNKYTGNLSPSGP 451
Score = 41 (19.5 bits), Expect = 9.9e-10, Sum P(4) = 9.9e-10
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 862 VFQQPNNPTAVSNQVN 877
+F PNNP +V V+
Sbjct: 763 IFDTPNNPESVEQVVD 778
Score = 39 (18.8 bits), Expect = 9.9e-10, Sum P(4) = 9.9e-10
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 585 RYLGSKNRAGVAKFDDGTTLFLVPPSDFLSK 615
+Y A + + + GT FL P DF +K
Sbjct: 663 KYTSKMLLAAIDEKNQGTYNFLYLPIDFKNK 693
Score = 37 (18.1 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 721 LIATLTSLIPATKSAEVAPGSSSARPLLAEPHVQSIEQLGNHY 763
L + L S P++K A + G + H+ ++ N Y
Sbjct: 400 LASALNSQGPSSKLAPIGRGQIGSNGFQQSSHLFQEPKMDNKY 442
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 165 (63.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 52/171 (30%), Positives = 80/171 (46%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL + L T +++ LF G + DKVT S + FV + R EDA A
Sbjct: 42 TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTG-QSLGYGFVNYVREEDALRAV 100
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ G + IK+ +ARP+ +L+V GI ++++ ELE F FG I + L
Sbjct: 101 SSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRIL 160
Query: 131 KDGNTA------FVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPS 173
D T FV + + ++A A+K +NG G EQ+ V F + S
Sbjct: 161 SDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVKFANNPAS 211
Score = 57 (25.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 24/86 (27%), Positives = 35/86 (40%)
Query: 219 PPSKI----LWVGYPPSVQMDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEFRSVD 269
PPS L+V Y S D+ +L FG I +K + + Y+FV +
Sbjct: 367 PPSDTAGYCLFV-YNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYT 425
Query: 270 EARRAKEGLQGRLFNDPRITIMFSSS 295
EA A L G + ++F SS
Sbjct: 426 EAYNAMLSLNGTNLAGKTLQVVFKSS 451
Score = 38 (18.4 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 834 YQFAAPSNSQKGYGMMQGTEASTLYGSSV 862
Y F + SN + Y M + L G ++
Sbjct: 416 YAFVSMSNYTEAYNAMLSLNGTNLAGKTL 444
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 173 (66.0 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 70/278 (25%), Positives = 112/278 (40%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK----VTTYSSRSFAFVYFKRVEDA 69
+ E P + L+VGNLS D T+A + +LF + G + T + + FV F A
Sbjct: 2 EDEMPKT--LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHA 59
Query: 70 KAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKF-GNIEDFK 128
AA A+ G G +K+ +A PS S VS + ++ F F G++
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWA--TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEI 117
Query: 129 FLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQL----RVDFLRSQPSRREQWPNSHDA 184
+D AF + R+ DA G+ G + + D + QW
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 185 RDGPIIGRGTGFSDNHSAYKRSHPQSSVGR--NRDGPPSKILWVGYPPSVQMDEQMLHNA 242
R + S Y+ + Q S N+ P + ++ G S + EQ++
Sbjct: 178 RTNWATRKPPA---PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTS-GLTEQLMRQT 233
Query: 243 MILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQG 280
FG+I I+ +P + YSFV F S + A A + G
Sbjct: 234 FSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 271
>ZFIN|ZDB-GENE-030131-3019 [details] [associations]
symbol:rbm4.2 "RNA binding motif protein 4.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3019 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339
HOGENOM:HOG000026790 HOVERGEN:HBG062217 EMBL:BC044503 EMBL:BC153457
IPI:IPI00493444 RefSeq:NP_955971.1 UniGene:Dr.123162 SMR:Q803F7
STRING:Q803F7 GeneID:557528 KEGG:dre:557528 CTD:557528
InParanoid:Q803F7 NextBio:20882029 Uniprot:Q803F7
Length = 385
Score = 180 (68.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 56/201 (27%), Positives = 93/201 (46%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR 82
+++GNLS +T DL+ LF +FG + + +++ FV+ ++A+AA L + +
Sbjct: 4 IFIGNLSPTSTADDLRSLFSEFGIVKECDVL--KNYGFVHMDSKKEAEAAIRKLHHYELK 61
Query: 83 GNPIKIEFARPAKP--SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEY 140
G I +E ++ KP S L V IS + +EL F ++G + + +KD AFV
Sbjct: 62 GQAINVELSK-GKPRGSTKLHVSNISSGCTNQELRAKFEEYGPVVECDIVKD--YAFVHM 118
Query: 141 SRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIG-RGTGFSDN 199
R++DA EA+ + G+ ++V SR P D I G +G D
Sbjct: 119 ERMDDAMEAISGLENTTFQGKLIKVQL---STSRLRTAPGMGDQTGCYICGEQGHWSKDC 175
Query: 200 HSAYKRSHPQSSVGRNRDGPP 220
+ S+ G GPP
Sbjct: 176 RHSQNGSYGGGMGGYPSRGPP 196
Score = 37 (18.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 465 SYGLGSITGGPASG 478
SYG+G G P+ G
Sbjct: 201 SYGMGGPGGHPSRG 214
>RGD|1310122 [details] [associations]
symbol:Pspc1 "paraspeckle component 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0042382
"paraspeckles" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310122 GO:GO:0005737 GO:GO:0005730 GO:GO:0006355 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0016363 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
eggNOG:NOG298586 GeneTree:ENSGT00390000005004 HOGENOM:HOG000231095
HOVERGEN:HBG009801 CTD:55269 OMA:DNREQEM OrthoDB:EOG444KKN
HSSP:Q99K48 EMBL:BC099204 IPI:IPI00203753 RefSeq:NP_001020843.1
UniGene:Rn.140724 ProteinModelPortal:Q4KLH4 SMR:Q4KLH4
STRING:Q4KLH4 PhosphoSite:Q4KLH4 Ensembl:ENSRNOT00000028219
GeneID:305910 KEGG:rno:305910 UCSC:RGD:1310122 InParanoid:Q4KLH4
NextBio:655234 Genevestigator:Q4KLH4 Uniprot:Q4KLH4
Length = 522
Score = 158 (60.7 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 45/134 (33%), Positives = 66/134 (49%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR 82
L+VGNL D T+ D K LF ++G +V R F F+ + A+ AK L G+ +
Sbjct: 83 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILK 142
Query: 83 GNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD--GNTA---F 137
P++I FA L V +S VS E LE+ F +FG +E + D G F
Sbjct: 143 SRPLRIRFATHGAA---LTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGF 199
Query: 138 VEYSRLEDAAEALK 151
VE++ A +AL+
Sbjct: 200 VEFAAKPPARKALE 213
Score = 65 (27.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 36/136 (26%), Positives = 52/136 (38%)
Query: 309 GTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPN-NFAGHLQPADIRGPSMPMRSIGAHGGH 367
G GPR + GD P+ GP M N N G + P GP M GA
Sbjct: 393 GDMGPRGAINMGDAFSPAPAGTQGPPPMMGMNMNNRGTI-PGPPMGPGPAMGPEGAANMG 451
Query: 368 ETLLSGPDFKDFHS---MQDPNAKNLDPNWRRP-SPSPGIRTSPTQGIRQPLNHAPGSWD 423
++ PD H+ Q P ++ P R S +P +P + P++ PG +
Sbjct: 452 TPMI--PDNGAVHNDRFPQGPPSQMGSPMGNRTGSETP---QAPMSAVG-PVSGGPGGFG 505
Query: 424 V-YDANQFQRDSKRLR 438
F+ +KR R
Sbjct: 506 RGSQGGNFEGPNKRRR 521
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 50/184 (27%), Positives = 94/184 (51%)
Query: 11 AYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYF 63
A D ++ +NL V L + T +L+ LF G + DKV +S + FV +
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL-GYGFVNY 68
Query: 64 KRVEDAKAAKDALQGSDFRGNPIKIEFARPAKP---SKHLWVGGISQTVSKEELEEGFLK 120
+DA+ A + L G + IK+ +ARP+ +L++ G+ ++++++++E+ F +
Sbjct: 69 VTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRSMTQKDVEDMFSR 128
Query: 121 FGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQP 172
FG I + + L D T AF+ + + +A EA+ N NG + G E + V F + P
Sbjct: 129 FGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITVKFA-ANP 187
Query: 173 SRRE 176
++ +
Sbjct: 188 NQNK 191
Score = 97 (39.2 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 7 KFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL--DKV----TTYSSRSFAF 60
K + A E +NL++ L T D++++F +FG + +V TT SR AF
Sbjct: 92 KVSYARPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Query: 61 VYFKRVEDAKAAKDALQGSDFRGN--PIKIEFARPAKPSKHLWVGGISQ 107
+ F + +A+ A G G+ PI ++FA A P+++ V +SQ
Sbjct: 152 IRFDKRSEAEEAITNFNGHKPPGSSEPITVKFA--ANPNQNKNVALLSQ 198
Score = 81 (33.6 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNI 153
+++ + Q + L + F FG + + K ++D NT FV + E+AA A+ ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 154 NGRQIGGEQLRVDF 167
NG ++G + L+V F
Sbjct: 306 NGYRLGDKILQVSF 319
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 50/174 (28%), Positives = 90/174 (51%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +L+ LF G + DKV +S + FV + +DA+ A
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL-GYGFVNYLNAKDAERAI 78
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ ARP+ S +L++ G+ +T++++++E+ FL FG I + + L
Sbjct: 79 NTLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVL 138
Query: 131 KDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRRE 176
D T AF+ + + +A EA+ + NG + G E + V F + P++ +
Sbjct: 139 VDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA-ANPNQNK 191
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 125 (49.1 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LK+LFGKFG AL KV T S + F FV F+R EDA+ A D
Sbjct: 24 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 83
Query: 76 LQGSDFRGNPIKI 88
+ G + G I +
Sbjct: 84 MNGKELNGKQIYV 96
Score = 88 (36.0 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K + +G + FV +S E+A +A+ +N
Sbjct: 128 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 187
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 188 GRIVATKPLYVALAQRKEERQAHLTNQYMQR 218
Score = 53 (23.7 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 234 MDEQMLHNAMILFGEIERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRL 282
+D++ L FG I K S+ + FV F S +EA +A + GR+
Sbjct: 138 IDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 190
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 148 (57.2 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 45/152 (29%), Positives = 80/152 (52%)
Query: 40 LFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94
LF K+ LD + S + FV + +DA+ A + L G + IK+ +ARP+
Sbjct: 99 LFEKWRPLDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 158
Query: 95 KPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLED 145
S +L+V G+ +T++++ELE+ F ++G I + L D T F+ + + +
Sbjct: 159 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIE 218
Query: 146 AAEALKNINGRQIGG--EQLRVDFLRSQPSRR 175
A EA+K +NG++ G E + V F + PS++
Sbjct: 219 AEEAIKGLNGQKPPGATEPITVKFANN-PSQK 249
Score = 60 (26.2 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 32/140 (22%), Positives = 51/140 (36%)
Query: 168 LRSQPSRREQWPNSHDA---RDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSK-- 222
L P+RR P + A R ++ G S S G N G P
Sbjct: 258 LYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGW 317
Query: 223 ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKE 276
++V Y + DE +L FG + +K + + + FV + DEA A
Sbjct: 318 CIFV-YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 376
Query: 277 GLQGRLFNDPRITIMFSSSE 296
L G D + + F +++
Sbjct: 377 SLNGYRLGDRVLQVSFKTNK 396
Score = 52 (23.4 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALD 48
+NL V L + T +LK LFG G ++
Sbjct: 49 TNLIVNYLPQNMTQEELKSLFGSIGEIE 76
Score = 39 (18.8 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 867 NNPTAVSNQVNLSQ 880
NNP+ +NQ LSQ
Sbjct: 244 NNPSQKTNQAILSQ 257
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 174 (66.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 49/165 (29%), Positives = 87/165 (52%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +L+ LF G + DKV +S + FV + +DA+ A
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL-GYGFVNYLNAKDAERAI 78
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ FARP+ + +L++ G+ +T++++++E+ FL FG+I + + L
Sbjct: 79 NTLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVL 138
Query: 131 KDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDF 167
D T AF+ + + +A EA+ + NG + G E + V F
Sbjct: 139 VDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKF 183
Score = 38 (18.4 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 687 PHASEPLIAHSSSMDYGSNNAAAISQ 712
P +SEP+ ++ S N A +SQ
Sbjct: 173 PGSSEPITVKFAANPNQSKNMALLSQ 198
>ZFIN|ZDB-GENE-050309-70 [details] [associations]
symbol:spen "spen homolog, transcriptional regulator
(Drosophila)" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050309-70 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921 Pfam:PF07744
PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:BX957326 EMBL:CU207252 IPI:IPI00497398
Ensembl:ENSDART00000109248 Bgee:F1QMN6 Uniprot:F1QMN6
Length = 3476
Score = 184 (69.8 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 46/180 (25%), Positives = 86/180 (47%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL---DKVTTYSSRSFAFVYFKRVEDA 69
D+ + L++GNL TT DL +F +FG + D S +AF+ + +
Sbjct: 478 DEFHPKATRTLFIGNLEKTTTYNDLLNIFQRFGEIVDIDIKKVNGSPQYAFLQYCDIASV 537
Query: 70 KAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129
A + G N +K+ F + + P+ +W+ G+S +++++ L F ++G++ F
Sbjct: 538 CKAIKKMDGEYLGNNRLKLGFGK-SMPTTCVWLDGLSSSITEQYLTRHFCRYGHVVKVVF 596
Query: 130 LKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR---REQWPNSHDARD 186
+ A + Y+ +E A A+K G +IGG +++VDF + R + D RD
Sbjct: 597 DRLKGMALILYNNIEYAQAAVKETKGWKIGGNKIKVDFANQESQMAFYRSMQGSGQDIRD 656
Score = 57 (25.1 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 39/206 (18%), Positives = 86/206 (41%)
Query: 608 PPSDFLSKVLKVVGPERLYGVVLKLPQQAMV-PPQTVDKQNIPPPHAEYGLTRPKEEHVL 666
PP+ + VL GP Y + +Q+++ PP +V Q++P H G R +
Sbjct: 2919 PPNSPV--VLGPAGPMSQYVSNIHHAEQSVIMPPHSVT-QSVPMSHLSQGDVRASTPTLS 2975
Query: 667 PVDYNRFSHDDSKVQSKMHFPHASE-PLIAHSSSMDYGSNNAAAISQAGVKLTPELIATL 725
+ Y S ++ + + P S P A + S+ +++ V+ + + L
Sbjct: 2976 GIGYGLRS--ENLLSPRSAPPQRSTTPQPAVIRDVILKSHAGSSVGGHVVETSNDDAQNL 3033
Query: 726 TSLIPATKSAEVAPGSSSARPLLAEPHVQSIEQLGNHYNPQAQSLTHHYASMSSTPSHSA 785
+ + + ++ S + H +++ +L + Q LT H + S + +A
Sbjct: 3034 PQGLRRSSAPQLQQESMVIQSEFKNLHHRAL-RLDQYARLMQQHLTDHPGVVESRQTRTA 3092
Query: 786 QMLLGNNQLQESTASLSQQGMVYSRP 811
+++ ++ + S+AS +V + P
Sbjct: 3093 EVVQSSSHI--SSASSKASSIVKNAP 3116
Score = 54 (24.1 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 309 GTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPNNFAGHLQPADIRGPSMPMRSIGAHGGHE 368
G GP S+ + I ++ ++ P S+ + HL D+R + + IG E
Sbjct: 2927 GPAGPMSQ--YVSNIHHAEQSVIMPPHSVTQSVPMSHLSQGDVRASTPTLSGIGYGLRSE 2984
Query: 369 TLLS 372
LLS
Sbjct: 2985 NLLS 2988
Score = 48 (22.0 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 730 PATKSAEVAPGSSSARPLLAEP 751
P TK++++ SS+ R +L EP
Sbjct: 2524 PDTKASDINASSSTLRKILMEP 2545
Score = 47 (21.6 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 23/91 (25%), Positives = 40/91 (43%)
Query: 551 LDMLAKHYAEAIGFDIVFFLP---DSED----DFASYTEFLRYLGSKNRAGVAKFDD-GT 602
L+ +A+ + ++ LP D ED A T F+ YL +K AG+ + G+
Sbjct: 3372 LEGVARRMTAENEYCLLLALPCGLDQEDVHNQTHALKTGFITYLQAKQAAGIINVPNPGS 3431
Query: 603 T--LFLV---PPSDFLSKVLKVVGPERLYGV 628
++V PP +F L + P+ L +
Sbjct: 3432 NQPAYVVQIFPPCEFSESHLSHLAPDLLNSI 3462
Score = 42 (19.8 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 618 KVVGPERLYGVVLKLPQQAMVP---PQTVDKQNIPPPHAEYGLTRPKEEHVLPVDYN 671
K GP+R+ + ++P + V Q++ K I + + T PK P Y+
Sbjct: 2721 KTEGPQRIIAKISQIPPASAVDIEFQQSITKSQIKQEPSSHPST-PKGSQT-PTGYS 2775
Score = 40 (19.1 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 628 VVLKLPQQAMVPPQTVDKQNIPPPHAEYGLT 658
+V PQ +TV+ + P PH++ +T
Sbjct: 3111 IVKNAPQIVRDGQKTVELKMSPSPHSDNRIT 3141
Score = 38 (18.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 716 KLTPELIATLTSLIPATKSAEVAPGSSSARPLLAEPHVQSIEQL 759
K+ PE + T+++ I + S + L EP +I+ L
Sbjct: 1095 KIKPERMVTVSTTIEELDNVMPVGPSLDLQARLGEPAEDAIDPL 1138
Score = 37 (18.1 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 729 IPATKSAEVAPGSSSARPLLAEPHVQSIEQLGNHYNPQAQSLTH 772
I AT++ V P S P + H+ S PQ + +H
Sbjct: 2859 IKATQTFNVKPVLSPRHPSFSGNHILSPSAPHERAVPQPKQDSH 2902
>UNIPROTKB|Q8WXF1 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0042382
"paraspeckles" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 GO:GO:0016607 EMBL:CH471075
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0016363
GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075 EMBL:AL354808
eggNOG:NOG298586 PDB:3SDE PDBsum:3SDE HOGENOM:HOG000231095
HOVERGEN:HBG009801 CTD:55269 OMA:DNREQEM OrthoDB:EOG444KKN
EMBL:AF448795 EMBL:AF449627 EMBL:AK001817 EMBL:BC014184
EMBL:CR457272 EMBL:AL834505 IPI:IPI00103525 IPI:IPI00395775
RefSeq:NP_001035879.1 UniGene:Hs.213198 ProteinModelPortal:Q8WXF1
SMR:Q8WXF1 IntAct:Q8WXF1 MINT:MINT-1395719 STRING:Q8WXF1
PhosphoSite:Q8WXF1 DMDM:74762636 PaxDb:Q8WXF1 PRIDE:Q8WXF1
DNASU:55269 Ensembl:ENST00000338910 Ensembl:ENST00000427943
Ensembl:ENST00000471658 Ensembl:ENST00000492741 GeneID:55269
KEGG:hsa:55269 UCSC:uc021rgx.1 GeneCards:GC13M020249
H-InvDB:HIX0011177 HGNC:HGNC:20320 HPA:HPA038904 MIM:612408
neXtProt:NX_Q8WXF1 PharmGKB:PA134968603 InParanoid:Q8WXF1
PhylomeDB:Q8WXF1 ChiTaRS:PSPC1 GenomeRNAi:55269 NextBio:59380
ArrayExpress:Q8WXF1 Bgee:Q8WXF1 CleanEx:HS_PSPC1
Genevestigator:Q8WXF1 Uniprot:Q8WXF1
Length = 523
Score = 158 (60.7 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 45/134 (33%), Positives = 66/134 (49%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR 82
L+VGNL D T+ D K LF ++G +V R F F+ + A+ AK L G+ +
Sbjct: 84 LFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILK 143
Query: 83 GNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD--GNTA---F 137
P++I FA L V +S VS E LE+ F +FG +E + D G F
Sbjct: 144 SRPLRIRFATHGAA---LTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGF 200
Query: 138 VEYSRLEDAAEALK 151
VE++ A +AL+
Sbjct: 201 VEFAAKPPARKALE 214
Score = 64 (27.6 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 35/135 (25%), Positives = 50/135 (37%)
Query: 309 GTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPNNFAGHLQPADIRGPSMPMRSIGAHGGHE 368
G GPR + GD P+ GP M N P GP M GA
Sbjct: 394 GDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNRATIPGPPMGPGPAMGPEGAANMGT 453
Query: 369 TLLSGPDFKDFHS---MQDPNAKNLDPNWRRP-SPSPGIRTSPTQGIRQPLNHAPGSWDV 424
++ PD H+ Q P ++ P R S +P +P G+ P++ PG +
Sbjct: 454 PMM--PDNGAVHNDRFPQGPPSQMGSPMGSRTGSETP---QAPMSGVG-PVSGGPGGFGR 507
Query: 425 -YDANQFQRDSKRLR 438
F+ +KR R
Sbjct: 508 GSQGGNFEGPNKRRR 522
Score = 45 (20.9 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 20/101 (19%), Positives = 38/101 (37%)
Query: 248 EIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFN----DPRITIMFSSSELAPGKDY 303
++ + + R + R +E RR +EG + + R+ M + G +
Sbjct: 349 QLRHEEEHRRREEEMIRHREQEELRRQQEGFKPNYMENREQEMRMGDMGPRGAINMGDAF 408
Query: 304 PGSYSGTKGPRSEMFFGDQIRPS-QLDMLGPNQSMQPNNFA 343
+ +G +GP M R + +GP +M P A
Sbjct: 409 SPAPAGNQGPPPMMGMNMNNRATIPGPPMGPGPAMGPEGAA 449
Score = 38 (18.4 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 467 GLGSITGGPASGAFVNVQGRNRLSP 491
G+G ++GGP G QG N P
Sbjct: 494 GVGPVSGGPG-GFGRGSQGGNFEGP 517
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 169 (64.5 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 50/184 (27%), Positives = 93/184 (50%)
Query: 11 AYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYF 63
A D ++ +NL V L + T +L+ LF G + DKV +S + FV +
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSL-GYGFVNY 68
Query: 64 KRVEDAKAAKDALQGSDFRGNPIKIEFARPAKP---SKHLWVGGISQTVSKEELEEGFLK 120
+DA+ A L G + IK+ +ARP+ +L++ G+ +T++++++E+ F +
Sbjct: 69 VTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSR 128
Query: 121 FGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQP 172
FG I + + L D T AF+ + + +A EA+ + NG + G E + V F + P
Sbjct: 129 FGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA-ANP 187
Query: 173 SRRE 176
++ +
Sbjct: 188 NQNK 191
Score = 96 (38.9 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 7 KFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL--DKV----TTYSSRSFAF 60
K + A E +NL++ L T D++++F +FG + +V TT SR AF
Sbjct: 92 KVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Query: 61 VYFKRVEDAKAAKDALQGSDFRGN--PIKIEFARPAKPSKHLWVGGISQ 107
+ F + +A+ A + G G+ PI ++FA A P+++ + +SQ
Sbjct: 152 IRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA--ANPNQNKNMALLSQ 198
Score = 81 (33.6 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNI 153
+++ + Q + L + F FG + + K ++D NT FV + E+AA A+ ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 154 NGRQIGGEQLRVDF 167
NG ++G + L+V F
Sbjct: 306 NGYRLGDKILQVSF 319
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 169 (64.5 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 50/184 (27%), Positives = 93/184 (50%)
Query: 11 AYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYF 63
A D ++ +NL V L + T +L+ LF G + DKV +S + FV +
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSL-GYGFVNY 68
Query: 64 KRVEDAKAAKDALQGSDFRGNPIKIEFARPAKP---SKHLWVGGISQTVSKEELEEGFLK 120
+DA+ A L G + IK+ +ARP+ +L++ G+ +T++++++E+ F +
Sbjct: 69 VTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSR 128
Query: 121 FGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQP 172
FG I + + L D T AF+ + + +A EA+ + NG + G E + V F + P
Sbjct: 129 FGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA-ANP 187
Query: 173 SRRE 176
++ +
Sbjct: 188 NQNK 191
Score = 96 (38.9 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 7 KFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL--DKV----TTYSSRSFAF 60
K + A E +NL++ L T D++++F +FG + +V TT SR AF
Sbjct: 92 KVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Query: 61 VYFKRVEDAKAAKDALQGSDFRGN--PIKIEFARPAKPSKHLWVGGISQ 107
+ F + +A+ A + G G+ PI ++FA A P+++ + +SQ
Sbjct: 152 IRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA--ANPNQNKNMALLSQ 198
Score = 81 (33.6 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNI 153
+++ + Q + L + F FG + + K ++D NT FV + E+AA A+ ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 154 NGRQIGGEQLRVDF 167
NG ++G + L+V F
Sbjct: 306 NGYRLGDKILQVSF 319
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 147 (56.8 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 49/174 (28%), Positives = 87/174 (50%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-- 80
++VGN +T +DL+ LF K+G +D+V S +AFVYF ED + A+DA++ D
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSG--YAFVYF---EDERDAEDAIRKLDNF 58
Query: 81 ---FRGNPIKIEFA-----RPA---------KPSKHLWVGGISQTVSKE-ELEEGFLKFG 122
+ + +E+A RP KP+K L+V +KE ++E+ F +G
Sbjct: 59 PFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYG 118
Query: 123 NIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRRE 176
+ + + + N +FV++ EDA +AL+ +I + V++ R+
Sbjct: 119 KVTNVRIRR--NFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERD 170
Score = 62 (26.9 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 368 ETLLSGPDFKDFHSMQDPNAKNLDPNWRR-PSPSPGIRTSPTQGIRQP 414
E L D +D + ++L P +RR PSP G R SP QG R+P
Sbjct: 160 EYALKDDDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQG-RRP 206
Score = 37 (18.1 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 486 RNRLSPVASKVTAGGFGRNP 505
R LSPV + + +GR P
Sbjct: 179 RRSLSPVYRRRPSPDYGRRP 198
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 169 (64.5 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 50/184 (27%), Positives = 94/184 (51%)
Query: 11 AYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYF 63
A D ++ +NL V L + T +L+ LF G + DKV +S + FV +
Sbjct: 18 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL-GYGFVNY 76
Query: 64 KRVEDAKAAKDALQGSDFRGNPIKIEFARPAKP---SKHLWVGGISQTVSKEELEEGFLK 120
+DA+ A + L G + IK+ +ARP+ +L++ G+ +T++++++E+ F +
Sbjct: 77 VTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSR 136
Query: 121 FGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQP 172
FG I + + L D T AF+ + + +A EA+ + NG + G E + V F + P
Sbjct: 137 FGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA-ANP 195
Query: 173 SRRE 176
++ +
Sbjct: 196 NQNK 199
Score = 99 (39.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 7 KFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL--DKV----TTYSSRSFAF 60
K + A E +NL++ L T D++++F +FG + +V TT SR AF
Sbjct: 100 KVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 159
Query: 61 VYFKRVEDAKAAKDALQGSDFRGN--PIKIEFARPAKPSKHLWVGGISQ 107
+ F + +A+ A + G G+ PI ++FA A P+++ V +SQ
Sbjct: 160 IRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA--ANPNQNKNVALLSQ 206
Score = 81 (33.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNI 153
+++ + Q + L + F FG + + K ++D NT FV + E+AA A+ ++
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 154 NGRQIGGEQLRVDF 167
NG ++G + L+V F
Sbjct: 314 NGYRLGDKILQVSF 327
>ZFIN|ZDB-GENE-050522-496 [details] [associations]
symbol:rbm14a "RNA binding motif protein 14a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-050522-496 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00390000020883 EMBL:BX511175 EMBL:BC095368
EMBL:BC157376 IPI:IPI00487638 RefSeq:NP_001108616.1
UniGene:Dr.77963 STRING:Q503D7 Ensembl:ENSDART00000009234
Ensembl:ENSDART00000122073 GeneID:323721 KEGG:dre:323721 CTD:323721
HOGENOM:HOG000063724 HOVERGEN:HBG062132 InParanoid:Q503D7
OMA:HMERKEE OrthoDB:EOG4Q2DFQ NextBio:20808405 Uniprot:Q503D7
Length = 471
Score = 175 (66.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 54/168 (32%), Positives = 84/168 (50%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAA 72
DD A L+VGNL +TT DL LF FG + +T R FAFV+ + A +A
Sbjct: 2 DDSSAV---KLFVGNLDLETTQDDLIALFAPFGEVVHITVL--RQFAFVHLQGEGAADSA 56
Query: 73 KDALQGSDFRGNPIKIEFA--RPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
L G ++RG + +E + RP +K ++VG + + S E+L + F +G + D +
Sbjct: 57 IRDLNGREYRGRSLVVEESKGRPLNSTK-VFVGNLCASCSVEDLYDLFSPYGKVLDCDKV 115
Query: 131 KDGNT-----AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPS 173
K + AFV EDA +A++ ++G G L V+ + Q S
Sbjct: 116 KTKPSSLTGYAFVYMEHKEDAEQAIEGLHGTTFMGRPLAVELSKVQQS 163
Score = 44 (20.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 353 GPSMPMRSIGAHGGH-ETLLSGPDFKDFHSMQDP 385
G S+P R H E LL PD+ H+ + P
Sbjct: 436 GTSIPPRVYEPTPTHKEPLLRRPDYPHQHTSESP 469
>TAIR|locus:2045605 [details] [associations]
symbol:ML2 "MEI2-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0045836 "positive regulation of meiosis" evidence=IMP]
[GO:0045927 "positive regulation of growth" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 GO:GO:0045927 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HOGENOM:HOG000030212
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AF101056
EMBL:AC006580 EMBL:AC006931 EMBL:AF367316 EMBL:AY143940
IPI:IPI00546291 PIR:E84859 RefSeq:NP_565990.1 UniGene:At.25505
ProteinModelPortal:Q9SJG8 SMR:Q9SJG8 STRING:Q9SJG8 PaxDb:Q9SJG8
PRIDE:Q9SJG8 EnsemblPlants:AT2G42890.1 GeneID:818890
KEGG:ath:AT2G42890 TAIR:At2g42890 eggNOG:NOG266727
InParanoid:Q9ASS1 OMA:DANDHEQ PhylomeDB:Q9SJG8
ProtClustDB:CLSN2688901 Genevestigator:Q9SJG8 Uniprot:Q9SJG8
Length = 843
Score = 188 (71.2 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 61/215 (28%), Positives = 103/215 (47%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKV-TTYSSRSFAFVYFKRVEDAKAAKDALQ 77
PS L+V N+++ D++L LF FG + + T SR F + + + A AA ALQ
Sbjct: 196 PSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQ 255
Query: 78 GSDFRGNPIKIEFARPAK-PSKH------LWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ R + I F+ P + PS+ L + + TVS +EL + F +G I + +
Sbjct: 256 NTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIRET 315
Query: 131 KDGNT-AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPN-SHDARDGP 188
+ F+EY + DA ALK +N +IGG+ ++++ R +RR P+ S D
Sbjct: 316 PNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVPSQSQDLERTE 375
Query: 189 IIGRGTGFSDNHSAYKRSHPQSS--VGRNRDGPPS 221
+ T F + ++ + P + +G G PS
Sbjct: 376 V----TNFYNQVGSHVANSPPGNWPIGSPVKGSPS 406
Score = 38 (18.4 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 465 SYGLGSITGGPASGAFVNVQGRNRLSPVAS 494
++ +GS G S AF G + PV S
Sbjct: 394 NWPIGSPVKGSPSHAFTRPHGLGMVRPVNS 423
>FB|FBgn0011640 [details] [associations]
symbol:lark "lark" species:7227 "Drosophila melanogaster"
[GO:0009790 "embryo development" evidence=IMP] [GO:0008062
"eclosion rhythm" evidence=NAS;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=NAS;IMP] [GO:0045804 "negative regulation of
eclosion" evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045475 "locomotor rhythm" evidence=IMP;TAS]
[GO:0007562 "eclosion" evidence=TAS] [GO:0040011 "locomotion"
evidence=TAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0003723 "RNA binding" evidence=NAS] [GO:0007303
"cytoplasmic transport, nurse cell to oocyte" evidence=IMP]
[GO:0008104 "protein localization" evidence=IMP] [GO:0030036 "actin
cytoskeleton organization" evidence=IMP] [GO:0007067 "mitosis"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005737 GO:GO:0008104
EMBL:AE014296 GO:GO:0007067 GO:GO:0000166 GO:GO:0046872
GO:GO:0030036 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0009790 GO:GO:0007303 GO:GO:0045475 Gene3D:4.10.60.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0008062 EMBL:U59476
EMBL:AY061458 RefSeq:NP_523957.1 RefSeq:NP_729237.1
RefSeq:NP_729238.1 RefSeq:NP_729239.1 RefSeq:NP_729240.1
UniGene:Dm.7078 ProteinModelPortal:Q94901 SMR:Q94901
MINT:MINT-786921 STRING:Q94901 PaxDb:Q94901 PRIDE:Q94901
EnsemblMetazoa:FBtr0076841 EnsemblMetazoa:FBtr0076842
EnsemblMetazoa:FBtr0076843 EnsemblMetazoa:FBtr0076844
EnsemblMetazoa:FBtr0076845 GeneID:38811 KEGG:dme:Dmel_CG8597
UCSC:CG8597-RA CTD:38811 FlyBase:FBgn0011640 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 InParanoid:Q94901 KO:K13187
OMA:GGHWSKE OrthoDB:EOG4DV42Z PhylomeDB:Q94901 GenomeRNAi:38811
NextBio:810485 Bgee:Q94901 GermOnline:CG8597 GO:GO:0045804
Uniprot:Q94901
Length = 352
Score = 171 (65.3 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 55/210 (26%), Positives = 93/210 (44%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR 82
L++GNL T +L+ LF K+G + + +++ FV+ + + + A L G
Sbjct: 9 LFIGNLDEKTQATELRALFEKYGTVVECDVV--KNYGFVHMETEQQGRDAIQNLNGYTLN 66
Query: 83 GNPIKIEFAR----PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
IK+E A+ P P+ ++VG ++ E+ E F K+G + + ++ N FV
Sbjct: 67 EFAIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIVR--NYGFV 124
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSD 198
+ D +A+K +NGR + G+ L+V SR P D GR
Sbjct: 125 HLDCVGDVQDAIKELNGRVVDGQPLKVQV---STSRVRPKPGMGDPEQCYRCGRS----- 176
Query: 199 NHSAYKRSHPQSSVGRNRDGPPSKILWVGY 228
H + + S G R+ PPS + GY
Sbjct: 177 GHWSKECPRLYGSAGGGRE-PPSPLSAGGY 205
Score = 42 (19.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 645 KQNIPPPHAEYGLTRPKEEHVLPVDYNRFSHD--DSKVQSKMHFPHASEP 692
+++ PPP + G++R P Y FS D D ++ S S P
Sbjct: 298 RRSPPPPRSSNGMSRYGSP--TPHGYEDFSRDAFDERMISSRGMRGPSPP 345
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 168 (64.2 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 48/174 (27%), Positives = 90/174 (51%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +L+ LF G + DKV +S + FV + +DA+ A
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL-GYGFVNYVTAKDAERAI 78
Query: 74 DALQGSDFRGNPIKIEFARPAKP---SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ +L++ G+ +T++++++E+ F +FG I + + L
Sbjct: 79 NTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 138
Query: 131 KDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRRE 176
D T AF+ + + +A EA+ + NG + G E + V F + P++ +
Sbjct: 139 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA-ANPNQNK 191
Score = 99 (39.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 7 KFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL--DKV----TTYSSRSFAF 60
K + A E +NL++ L T D++++F +FG + +V TT SR AF
Sbjct: 92 KVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Query: 61 VYFKRVEDAKAAKDALQGSDFRGN--PIKIEFARPAKPSKHLWVGGISQ 107
+ F + +A+ A + G G+ PI ++FA A P+++ V +SQ
Sbjct: 152 IRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA--ANPNQNKNVALLSQ 198
Score = 81 (33.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNI 153
+++ + Q + L + F FG + + K ++D NT FV + E+AA A+ ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 154 NGRQIGGEQLRVDF 167
NG ++G + L+V F
Sbjct: 306 NGYRLGDKILQVSF 319
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 168 (64.2 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 50/184 (27%), Positives = 93/184 (50%)
Query: 11 AYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYF 63
A D ++ +NL V L + T +L+ LF G + DKV +S + FV +
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSL-GYGFVNY 68
Query: 64 KRVEDAKAAKDALQGSDFRGNPIKIEFARPAKP---SKHLWVGGISQTVSKEELEEGFLK 120
+DA+ A + L G + IK+ +ARP+ +L++ G+ +T++++++E+ F
Sbjct: 69 VTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSP 128
Query: 121 FGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQP 172
FG I + + L D T AF+ + + +A EA+ + NG + G E + V F + P
Sbjct: 129 FGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA-ANP 187
Query: 173 SRRE 176
++ +
Sbjct: 188 NQNK 191
Score = 96 (38.9 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 7 KFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL--DKV----TTYSSRSFAF 60
K + A E +NL++ L T D++++F FG + +V TT SR AF
Sbjct: 92 KVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAF 151
Query: 61 VYFKRVEDAKAAKDALQGSDFRGN--PIKIEFARPAKPSKHLWVGGISQ 107
+ F + +A+ A + G G+ PI ++FA A P+++ V +SQ
Sbjct: 152 IRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA--ANPNQNKNVALLSQ 198
Score = 78 (32.5 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNI 153
+++ + Q + L + F FG + + K ++D NT FV + E+A+ A+ ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 154 NGRQIGGEQLRVDF 167
NG ++G + L+V F
Sbjct: 306 NGYRLGDKILQVSF 319
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 142 (55.0 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 43/172 (25%), Positives = 83/172 (48%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL------DKVTTYSSRSFAFVYFKRVEDAKAAKD 74
S+L+VG+L D T+A L E+F G + V T S +A++ F++ DA+ A D
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 75 ALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129
+ +G PI+I ++ P ++++ + ++ + L + F FG+I K
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 130 L--KDGNTAF--VEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
+ + G+ F V + E A +A+ +NG + ++ V +S+ R +
Sbjct: 131 VYNEHGSRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAE 182
Score = 98 (39.6 bits), Expect = 5.8e-06, Sum P(3) = 5.8e-06
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTY-----SSRSFAFVYFKRVEDAKAAKDA 75
+N++V NL D + L++LF +FG V SR F F+ F++ E+A+ A D
Sbjct: 191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDH 250
Query: 76 LQGSDFRG 83
+ G + G
Sbjct: 251 MNGKEVSG 258
Score = 86 (35.3 bits), Expect = 5.8e-06, Sum P(3) = 5.8e-06
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + +++ + L+E F +G I K + + + + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR +G + L V + + R+ N + R
Sbjct: 355 GRIVGTKPLYVALAQRKEERKAILTNQYRRR 385
Score = 73 (30.8 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 232 VQMDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEFRSVDEARRAKEGLQGR 281
V MDEQ L + FG+ + +K + SR + F+ F +EA++A + + G+
Sbjct: 200 VDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGK 254
Score = 52 (23.4 bits), Expect = 2.5e-09, Sum P(3) = 2.5e-09
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 391 DPNWRRPSPSPGIRTSPTQGIRQPLNHAP 419
DP W P P + QPL+ AP
Sbjct: 426 DPRWTAQPHGPSSTCPPAASVVQPLSTAP 454
Score = 38 (18.4 bits), Expect = 6.4e-08, Sum P(3) = 6.4e-08
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 730 PATKSAEVAPGSSSARPLLAEPH 752
P S+ P +S +PL PH
Sbjct: 433 PHGPSSTCPPAASVVQPLSTAPH 455
Score = 37 (18.1 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 289 TIMFSSSELAPGKDYPGSYSGTKGPRS 315
T+ +SS+ +AP + P + GP S
Sbjct: 412 TMYYSSASIAPMQPDPRWTAQPHGPSS 438
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 149 (57.5 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 39/131 (29%), Positives = 66/131 (50%)
Query: 50 VTTYSSRS-FAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR-PAKPSK------HLW 101
+T ++S + FV F DA AA A+ G G +K+ +A P+ K H++
Sbjct: 2 ITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVF 61
Query: 102 VGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNING 155
VG +S ++ E+++ F FG I D + +KD T FV + DA A+ ++ G
Sbjct: 62 VGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 121
Query: 156 RQIGGEQLRVD 166
+ +GG Q+R +
Sbjct: 122 QWLGGRQIRTN 132
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 168 (64.2 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 48/174 (27%), Positives = 90/174 (51%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +L+ LF G + DKV +S + FV + +DA+ A
Sbjct: 47 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL-GYGFVNYVTAKDAERAI 105
Query: 74 DALQGSDFRGNPIKIEFARPAKP---SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ +L++ G+ +T++++++E+ F +FG I + + L
Sbjct: 106 NTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 165
Query: 131 KDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRRE 176
D T AF+ + + +A EA+ + NG + G E + V F + P++ +
Sbjct: 166 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA-ANPNQNK 218
Score = 99 (39.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 7 KFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL--DKV----TTYSSRSFAF 60
K + A E +NL++ L T D++++F +FG + +V TT SR AF
Sbjct: 119 KVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 178
Query: 61 VYFKRVEDAKAAKDALQGSDFRGN--PIKIEFARPAKPSKHLWVGGISQ 107
+ F + +A+ A + G G+ PI ++FA A P+++ V +SQ
Sbjct: 179 IRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA--ANPNQNKNVALLSQ 225
Score = 81 (33.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNI 153
+++ + Q + L + F FG + + K ++D NT FV + E+AA A+ ++
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 154 NGRQIGGEQLRVDF 167
NG ++G + L+V F
Sbjct: 333 NGYRLGDKILQVSF 346
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 161 (61.7 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 34/94 (36%), Positives = 58/94 (61%)
Query: 7 KFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRV 66
++N+ + +E P+ NLW+GN++++ + LK++F +FG +D + R AFV F V
Sbjct: 264 QYNKPH--QEETPTKNLWLGNVNSNVSYELLKQIFDQFGNVDTIRILHGRGCAFVNFFTV 321
Query: 67 EDAKAAKDALQGSDFRGNPIKIEFARPAKPSKHL 100
E A AA++ L G+ G P+KI F R + S+H+
Sbjct: 322 ESAAAARNGLNGTMVCGMPLKINF-RKEEDSRHI 354
Score = 148 (57.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 28/79 (35%), Positives = 48/79 (60%)
Query: 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNING 155
P+K+LW+G ++ VS E L++ F +FGN++ + L AFV + +E AA A +NG
Sbjct: 274 PTKNLWLGNVNSNVSYELLKQIFDQFGNVDTIRILHGRGCAFVNFFTVESAAAARNGLNG 333
Query: 156 RQIGGEQLRVDFLRSQPSR 174
+ G L+++F + + SR
Sbjct: 334 TMVCGMPLKINFRKEEDSR 352
Score = 137 (53.3 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 33/116 (28%), Positives = 59/116 (50%)
Query: 5 PSKFNRAYDDKEA----PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAF 60
P++ Y +K A P+ +W GN++ ++T+ +++ LF +FG L + ++ AF
Sbjct: 157 PNQMAPHYQNKGAGGQLEPTKIVWAGNINPESTEEEVRHLFSQFGYLQAIKIIPNKQCAF 216
Query: 61 VYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEE 116
+ F V A A+ L G+ FRG P+K+ F + + + GG +K EE
Sbjct: 217 ITFADVNCAIQAQFNLNGTIFRGLPLKLGFGKVENAPQANFGGGRFDQYNKPHQEE 272
Score = 104 (41.7 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNIN 154
+P+K +W G I+ ++EE+ F +FG ++ K + + AF+ ++ + A +A N+N
Sbjct: 174 EPTKIVWAGNINPESTEEEVRHLFSQFGYLQAIKIIPNKQCAFITFADVNCAIQAQFNLN 233
Query: 155 GRQIGGEQLRVDF 167
G G L++ F
Sbjct: 234 GTIFRGLPLKLGF 246
Score = 92 (37.4 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 215 NRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRA 274
+++ P+K LW+G S + ++L FG ++ I+ R +FV F +V+ A A
Sbjct: 269 HQEETPTKNLWLGNVNS-NVSYELLKQIFDQFGNVDTIRILHGRGCAFVNFFTVESAAAA 327
Query: 275 KEGLQGRLFNDPRITIMFSSSE 296
+ GL G + + I F E
Sbjct: 328 RNGLNGTMVCGMPLKINFRKEE 349
Score = 39 (18.8 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 639 PPQTVDKQNIPPPHAEY-GLTRPKEE 663
PPQ+ +Q I AEY T P+ E
Sbjct: 432 PPQSPQEQQIIDKLAEYVARTGPRFE 457
>ZFIN|ZDB-GENE-040426-2824 [details] [associations]
symbol:srsf6a "serine/arginine-rich splicing
factor 6a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2824 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL954866 IPI:IPI00931275 Ensembl:ENSDART00000020251
ArrayExpress:E7FFF7 Bgee:E7FFF7 Uniprot:E7FFF7
Length = 379
Score = 168 (64.2 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 61/218 (27%), Positives = 106/218 (48%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIG 159
+++G +S V +++++ F +G + + LK+G FVE+ DA +A+ +NG+++
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLLEVD-LKNGY-GFVEFEDTRDADDAVYELNGKELC 61
Query: 160 GEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGP 219
GE++ V+ R P RR++ D+ G G G G S Y +S GR++ GP
Sbjct: 62 GERVMVEHARG-P-RRDR-----DSYGG---GGGGGGGGGRSGYSS---RSRTGRDKYGP 108
Query: 220 PSKILW--VGYPPSVQMDEQMLHNAMILFGEIERIKSYPSR-NYSFVEFRSVDEARRAKE 276
P + + + S + Q L + M GE+ ++ R N +EFRS + RRA E
Sbjct: 109 PVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERANEGVIEFRSYSDMRRALE 168
Query: 277 GLQGRLFNDPRITIMFSSSELAPGKDYPGSYSGTKGPR 314
L G N +I ++ + Y GS S ++ R
Sbjct: 169 KLDGTDINGRKIRLVEDKPRRR--RSYSGSRSRSRSRR 204
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 164 (62.8 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 57/183 (31%), Positives = 94/183 (51%)
Query: 6 SKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALD-KV---TTYSSRSFAFV 61
SK N + ++K+ + L+V NL T DL+E+F + A+D +V T +SR A++
Sbjct: 366 SKEN-SQENKKERDARTLFVKNLPYSITQDDLREIFDQ--AVDIRVPMGNTGTSRGIAYI 422
Query: 62 YFKRVEDAKAAKDALQGSDFRGNPIKIEFA--------RPA-KPSKHLWVGGISQTVSKE 112
FK A+ A + QGSD +G I ++F R A SK L V ++ + S++
Sbjct: 423 EFKTEAIAEKALEEAQGSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASED 482
Query: 113 ELEEGFLKFGNIE-DFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171
L+ F K +I + AFVE+ +ED+ EAL+N N I G +R+++ ++
Sbjct: 483 SLQSVFEKAVSIRIPQNNGRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLEYSQND 542
Query: 172 PSR 174
R
Sbjct: 543 RER 545
Score = 134 (52.2 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 19 PSSNLWVGNLSADTTDADLKELF-GKFGA---LDKVTTYSSRSFAFVYFKRVEDAKAAKD 74
P+ L+V LS DTTD LK+ F G A D+ T SS+ F FV F +D KAAK+
Sbjct: 555 PTKTLFVKGLSDDTTDQTLKDSFDGAIAARIATDR-DTGSSKGFGFVDFDNEQDCKAAKE 613
Query: 75 ALQGSDFRGNPIKIEFARP 93
A+ + GN + +++A+P
Sbjct: 614 AMDDGEIDGNKVTLDYAKP 632
Score = 58 (25.5 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 24/104 (23%), Positives = 48/104 (46%)
Query: 213 GRNRDGPPSKILWV-GYPPSVQMDEQMLHNAM--ILFGEIERIKSY-PSRNYSFVEFRSV 268
GR GP +K L+V G S +Q L ++ + I + S+ + FV+F +
Sbjct: 549 GRGNSGP-TKTLFVKGL--SDDTTDQTLKDSFDGAIAARIATDRDTGSSKGFGFVDFDNE 605
Query: 269 DEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPGSYSGTKG 312
+ + AKE + + ++T+ ++ + G+ G + G +G
Sbjct: 606 QDCKAAKEAMDDGEIDGNKVTLDYAKPKGEGGR---GGFGGGRG 646
>UNIPROTKB|Q5ZIZ5 [details] [associations]
symbol:NONO "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016363
GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075 eggNOG:NOG298586
GeneTree:ENSGT00390000005004 CTD:4841 HOGENOM:HOG000231095
HOVERGEN:HBG009801 KO:K13214 OMA:NQQYHKE OrthoDB:EOG4ZCT50
EMBL:AADN02013229 EMBL:AADN02013230 EMBL:AJ720639 IPI:IPI00603370
RefSeq:NP_001026703.1 UniGene:Gga.4549 SMR:Q5ZIZ5
Ensembl:ENSGALT00000008838 GeneID:428701 KEGG:gga:428701
InParanoid:Q5ZIZ5 NextBio:20829624 Uniprot:Q5ZIZ5
Length = 473
Score = 156 (60.0 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 46/142 (32%), Positives = 70/142 (49%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAK 73
+K S L+VGNL D T+ ++++LF K+G +V + + F F+ + A+ AK
Sbjct: 67 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAK 126
Query: 74 DALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD- 132
L RG +++ FA S L V + Q VS E LEE F FG +E + D
Sbjct: 127 VELDNMPLRGKQLRVRFACH---SASLTVRNLPQFVSNELLEEAFSVFGQVERAVVIVDD 183
Query: 133 -GNTA---FVEYSRLEDAAEAL 150
G ++ VE+S A +AL
Sbjct: 184 RGRSSGKGIVEFSGKPAARKAL 205
Score = 61 (26.5 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 38/139 (27%), Positives = 54/139 (38%)
Query: 233 QMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEA--RRAKEGLQGRLFNDPRITI 290
+M+E LHN + + I+ R E R E RR +EG +G F D R
Sbjct: 325 RMEE--LHNQEVQKRKQLEIRQEEERRRREEEMRRQQEEMMRRQQEGFKGN-FADAR--- 378
Query: 291 MFSSSELAPGKDYPGSYSGTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPNNFAGHLQP-- 348
++ G+ G G R M G + + GP +M P+ G P
Sbjct: 379 --EPPDMRMGQMGMGGTIGMNN-RGAMG-GTNVPAAAPPAAGPG-AMIPDGAMGMTPPPP 433
Query: 349 ADIRGPSMPMRSIGAHGGH 367
AD G M +GA GG+
Sbjct: 434 ADRFGQGSAMEGLGAMGGN 452
Score = 55 (24.4 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 20/78 (25%), Positives = 33/78 (42%)
Query: 321 DQIRPSQLDMLGPNQSMQPNNFAGHLQPADIR------GPSMPMRSIGAHGGHETLLSGP 374
+++R Q +M+ Q NFA +P D+R G ++ M + GA GG + P
Sbjct: 353 EEMRRQQEEMMRRQQEGFKGNFADAREPPDMRMGQMGMGGTIGMNNRGAMGGTNVPAAAP 412
Query: 375 DFKDFHSMQDPNAKNLDP 392
+M A + P
Sbjct: 413 PAAGPGAMIPDGAMGMTP 430
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 164 (62.8 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 41/110 (37%), Positives = 60/110 (54%)
Query: 5 PSKFNRAYDDKEAPPSSNLWVG--NLSADTTDADLKELFGKFGALDKVT-TYS-----SR 56
P R + A P N +G LS TT+ DL+E+F K+G + V+ Y SR
Sbjct: 100 PMSTRRRHIGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 159
Query: 57 SFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA---RPAKPSKHLWVG 103
FAFVYF+ VEDAK AK+ G + G I+++F+ RP P+ +++G
Sbjct: 160 GFAFVYFENVEDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209
Score = 118 (46.6 bits), Expect = 0.00069, P = 0.00069
Identities = 42/124 (33%), Positives = 59/124 (47%)
Query: 91 ARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLE 144
A P P+ L V G+S ++ +L E F K+G I D + D + AFV + +E
Sbjct: 112 ANP-DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVE 170
Query: 145 DAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGT-GFSDNHSAY 203
DA EA + NG ++ G ++RVDF S R P H G +GR T G S Y
Sbjct: 171 DAKEAKERANGMELDGRRIRVDF--SITKR----P--HTPTPGIYMGRPTYGSSRRRDYY 222
Query: 204 KRSH 207
R +
Sbjct: 223 DRGY 226
>ZFIN|ZDB-GENE-030131-3902 [details] [associations]
symbol:rbm4.1 "RNA binding motif protein 4.1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-030131-3902 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
EMBL:BC046057 EMBL:BC071513 IPI:IPI00501593 RefSeq:NP_955999.1
UniGene:Dr.132298 ProteinModelPortal:Q6IQ97 SMR:Q6IQ97 PRIDE:Q6IQ97
Ensembl:ENSDART00000052862 GeneID:573001 KEGG:dre:573001 CTD:573001
HOGENOM:HOG000026790 HOVERGEN:HBG062217 InParanoid:Q6IQ97
OMA:PYEERDP OrthoDB:EOG4NP74W NextBio:20891027 ArrayExpress:Q6IQ97
Bgee:Q6IQ97 Uniprot:Q6IQ97
Length = 419
Score = 171 (65.3 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 54/203 (26%), Positives = 92/203 (45%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR 82
++VGNLS +TT +++ LF ++G + + ++F FV+ +A A L
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIV--KNFGFVHMDSKSEADEAIQNLHHYMLN 61
Query: 83 GNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYS 141
G + +E ++ K S L VG IS + + +EL F ++G + + +KD AFV
Sbjct: 62 GMAMNVEMSKGKPKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD--YAFVHME 119
Query: 142 RLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGF--SDN 199
R+EDA EA+ ++ G+ + V S+ R P +G TG
Sbjct: 120 RVEDAMEAISGLDNTAFQGKLMSVKLSTSR------------LRTAPGMGERTGCYRCGQ 167
Query: 200 HSAYKRSHPQSSVGRNRDGPPSK 222
+ + P G R+GP S+
Sbjct: 168 EGHWSKECPLDQNGSYREGPSSE 190
Score = 43 (20.2 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 390 LDPNWRRPSPSPGIRTSPTQ-GIRQPLNHAPGSWDVY 425
+DP R P P P TS R P+ AP + Y
Sbjct: 349 VDPYERHPLPPPPAPTSSYYVRERSPVRRAPHEAEGY 385
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 173 (66.0 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 70/278 (25%), Positives = 112/278 (40%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK----VTTYSSRSFAFVYFKRVEDA 69
+ E P + L+VGNLS D T+A + +LF + G + T + + FV F A
Sbjct: 2 EDEMPKT--LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHA 59
Query: 70 KAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKF-GNIEDFK 128
AA A+ G G +K+ +A PS S VS + ++ F F G++
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWA--TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEI 117
Query: 129 FLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQL----RVDFLRSQPSRREQWPNSHDA 184
+D AF + R+ DA G+ G + + D + QW
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 185 RDGPIIGRGTGFSDNHSAYKRSHPQSSVGR--NRDGPPSKILWVGYPPSVQMDEQMLHNA 242
R + S Y+ + Q S N+ P + ++ G S + EQ++
Sbjct: 178 RTNWATRKPPA---PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTS-GLTEQLMRQT 233
Query: 243 MILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQG 280
FG+I I+ +P + YSFV F S + A A + G
Sbjct: 234 FSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 271
Score = 39 (18.8 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 332 GPNQSMQPNNFAGH 345
G N SM PN AG+
Sbjct: 365 GQNGSMMPNQPAGY 378
>UNIPROTKB|F1MRK2 [details] [associations]
symbol:SPEN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050769 "positive regulation of neurogenesis"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001191 "RNA
polymerase II transcription factor binding transcription factor
activity involved in negative regulation of transcription"
evidence=IEA] [GO:0001085 "RNA polymerase II transcription factor
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0017053 GO:GO:0003714
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003700
GO:GO:0050769 GO:GO:0003697 GO:GO:0001191 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 OMA:KHLKPEQ InterPro:IPR010912
GeneTree:ENSGT00530000063730 EMBL:DAAA02043252 IPI:IPI01003198
Ensembl:ENSBTAT00000024930 Uniprot:F1MRK2
Length = 3655
Score = 186 (70.5 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 45/158 (28%), Positives = 78/158 (49%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL---DKVTTYSSRSFAFVYFKRVEDA 69
D+ + L++GNL TT DL+ +F +FG + D +AF+ + +
Sbjct: 432 DEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASV 491
Query: 70 KAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129
A + G N +K+ F + + P+ +W+ G+S VS + L F ++G + F
Sbjct: 492 CKAIKKMDGEYLGNNRLKLGFGK-SMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVF 550
Query: 130 LKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167
+ A V Y+ +E A A+K GR+IGG +++VDF
Sbjct: 551 DRLKGMALVLYNEIEYAQAAVKETKGRKIGGNKIKVDF 588
Score = 58 (25.5 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 31/127 (24%), Positives = 45/127 (35%)
Query: 633 PQQAMVPPQTVDKQNIPPPHAEYGLTRPKEEHVLPVDYNRFSHDDSKVQSKMHFPHASEP 692
P Q P Q V P L++P + PV Q ++ A+ P
Sbjct: 3344 PAQPTQPLQPVQSAQPAQPAQPSQLSQPPSSKMPPVSQEAKGTQTGVEQPRLPNVSANRP 3403
Query: 693 LIAHSSSM--DYGSNNAAAISQAGVKLTPELIATLTSLIPATKSAEVAPGSS--SARPLL 748
H+ ++ + S V L P+L L + A K P SS S P L
Sbjct: 3404 AEPHTQVQRAQAETSQTSYPSPVCVSLKPDLPTPLPAQA-APKQPLFVPTSSGPSTPPGL 3462
Query: 749 AEPHVQS 755
A PH ++
Sbjct: 3463 ALPHTEA 3469
Score = 56 (24.8 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 29/123 (23%), Positives = 51/123 (41%)
Query: 520 GTPVCRARCVPFGKGIES-ELPEVVNCSARTGLDMLAKHYAEAIGFDIVFFLPDSED--D 576
G V R +P +G + + + A + L+ +A+ + ++ LP D D
Sbjct: 3520 GNNVLAHRSLPLSEGGPPLRIAQRMRLEA-SQLEGVARRMTVETDYCLLLALPCGRDQED 3578
Query: 577 FASYTE-----FLRYLGSKNRAGVAKFDD-GTT-----LFLVPPSDFLSKVLKVVGPERL 625
S TE F+ YL +K AG+ + G+ L + PP +F L + P+ L
Sbjct: 3579 VVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLSRLAPDLL 3638
Query: 626 YGV 628
+
Sbjct: 3639 ASI 3641
Score = 49 (22.3 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 305 GSYSGTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPNNFAGHLQPADIRGPSMPMRS 360
G S TK P G+ ++P+Q P Q +QP A QPA S P S
Sbjct: 3324 GLPSRTKVPTQGPPEGEPLQPAQ-----PTQPLQPVQSAQPAQPAQPSQLSQPPSS 3374
Score = 47 (21.6 bits), Expect = 3.0e-07, Sum P(4) = 3.0e-07
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 727 SLIPATKSAEVAPGSSSARPLLAEP 751
+L P TK++++ SS+ R +L +P
Sbjct: 2538 ALPPDTKASDIDTSSSTLRKILMDP 2562
Score = 46 (21.3 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 44/180 (24%), Positives = 67/180 (37%)
Query: 633 PQQAMVPPQTVDKQNIPPPHAEY-GLTRPKEEHVLP-VDYNRFSHDDSKVQ-SKMHFPHA 689
P Q PP + +PP E G E+ LP V NR + ++VQ ++
Sbjct: 3365 PSQLSQPPSS----KMPPVSQEAKGTQTGVEQPRLPNVSANRPAEPHTQVQRAQAETSQT 3420
Query: 690 SEPL-IAHSSSMDYGSNNAAAISQAGVKLTPELIATLTS---LIPATKSAEVAPGSSSAR 745
S P + S D + A + P T +P T+ A + P S+
Sbjct: 3421 SYPSPVCVSLKPDLPTPLPAQAAPKQPLFVPTSSGPSTPPGLALPHTE-APLTPKQDSSP 3479
Query: 746 PLLAEPHVQSIEQLGNHYNPQAQSLTHHYASMSSTPSHSAQMLLGNNQLQESTASLSQQG 805
L ++ V + QL Y Q L A + T + + GNN L + LS+ G
Sbjct: 3480 HLTSQRPVDMV-QLLKKYPIVWQGLL---ALKNDTAAVQLHFVSGNNVLAHRSLPLSEGG 3535
Score = 45 (20.9 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 372 SGPDFKDFHSMQDPNAKNLDPNWRRPSPSPGIRTSPTQGIRQPLNHAPGSWDVYDANQFQ 431
SG D +DF+ M + ++ S + I+T P RQ GS YD +Q +
Sbjct: 604 SGQDIRDFYEMLLERSNFSCVESKQSSWTTYIKT-P----RQCQEERRGS---YDYSQDR 655
Query: 432 RDSKRLRVDGSMPIDDAT-FPSR 453
+ +R G+ P D +P+R
Sbjct: 656 TYYENVRTPGTYPEDSRRDYPAR 678
Score = 41 (19.5 bits), Expect = 3.0e-07, Sum P(4) = 3.0e-07
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 639 PPQTVDKQNIPPPHA--EYGLTR-PKEEHVLPVDYNRFSHDDSKVQSKMHFPHASEPLIA 695
P +T ++++P + E T+ P P+ HD+ + + K+H S+P+
Sbjct: 2423 PSKTPSREDLPQESSMDEETPTKAPALPDPTPLSQPAPVHDEPQARFKVHSIIESDPVTP 2482
Query: 696 HSSS 699
S S
Sbjct: 2483 PSDS 2486
Score = 40 (19.1 bits), Expect = 3.5e-06, Sum P(4) = 3.5e-06
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 639 PPQTVDKQNIPPPHAEYGLTRPKEEHV 665
PP + Q PPP E G+ E V
Sbjct: 2266 PPYPAESQTDPPPPEE-GMEPETNEAV 2291
Score = 39 (18.8 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 708 AAISQAGVKLTPELIATLTSLIPATKSAEVAPGSSSARPLLA---EPHV-QSIEQL 759
A+ SQ + + PE +T T P T+ E A +P LA EP+ Q E +
Sbjct: 1766 ASFSQVEISVDPEPNSTQTLPKP-TQKPEEADEPQVEKPDLAANVEPNTSQKTEDV 1820
Score = 37 (18.1 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 716 KLTPELIATLTSLIP 730
+L P+L+A+++++ P
Sbjct: 3632 RLAPDLLASISNISP 3646
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 168 (64.2 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 75/304 (24%), Positives = 132/304 (43%)
Query: 19 PSS--NLWVGNLSADTTDADLKELFGKFGALD--KVTTYSSRSFAFV-YFKRVEDAKAAK 73
PS+ +++VGN+ T+ L+E+F G ++ K+ S+ FV YF R A A
Sbjct: 55 PSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDR-RSAALAI 113
Query: 74 DALQGSDFRGNPIKIEFA----RPAKPSKH--LWVGGISQTVSKEELEEGFLKFGNIEDF 127
+L G G PIK+ +A + S H ++VG +S V+ L + F F + D
Sbjct: 114 LSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDA 173
Query: 128 KFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNS 181
+ + D T FV + +DA A+ +NG+ + Q+R ++ + + +S
Sbjct: 174 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSS 233
Query: 182 HDARDGPIIGRGTGFS-DNHSAYKRSHPQSSVGRNRDGPPSKILWVGY--PPSVQMDEQM 238
D + ++ TG S D P+++ ++VG P Q+D
Sbjct: 234 -DGKS--VVELTTGSSEDGKETLNEETPENN-------SQFTTVYVGNLAPEVTQLDLHR 283
Query: 239 LHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKE--GLQGRLFNDPRITIMFSSSE 296
+A+ G IE ++ + + FV + + EA A + Q LFN +I + +
Sbjct: 284 YFHALGA-GVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNR-QIKCSWGNKP 341
Query: 297 LAPG 300
PG
Sbjct: 342 TPPG 345
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 167 (63.8 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 69/278 (24%), Positives = 112/278 (40%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK----VTTYSSRSFAFVYFKRVEDA 69
+ E P + L+VGNLS D T+A + +LF + G + T + + FV F A
Sbjct: 2 EDEMPKT--LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHA 59
Query: 70 KAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKF-GNIEDFK 128
AA A+ G G +K+ +A PS S VS + ++ F F G++
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWA--TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEI 117
Query: 129 FLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQL----RVDFLRSQPSRREQWPNSHDA 184
+D AF + R+ DA G+ G + + D + QW
Sbjct: 118 TTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 185 RDGPIIGRGTGFSDNHSAYKRSHPQSSVGR--NRDGPPSKILWVGYPPSVQMDEQMLHNA 242
R + S Y+ + Q S ++ P + ++ G S + EQ++
Sbjct: 178 RTNWATRKPPA---PKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTS-GLTEQLMRQT 233
Query: 243 MILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQG 280
FG+I I+ +P + YSFV F S + A A + G
Sbjct: 234 FSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNG 271
>UNIPROTKB|E1C0S2 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 IPI:IPI00584056
EMBL:AADN02005081 EMBL:AADN02005082 EMBL:AADN02005083
EMBL:AADN02005084 Ensembl:ENSGALT00000027687 ArrayExpress:E1C0S2
Uniprot:E1C0S2
Length = 523
Score = 158 (60.7 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 46/143 (32%), Positives = 68/143 (47%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAK 73
+K L+VGNL D T+ D K LF ++G +V R F F+ + A+ AK
Sbjct: 74 EKSYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAK 133
Query: 74 DALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD- 132
L G+ + P++I FA L V +S VS E LE+ F +FG +E + D
Sbjct: 134 AELDGTILKSRPLRIRFATHGAA---LTVKNLSPVVSNELLEQAFSQFGPVERAVVVVDD 190
Query: 133 -GNTA---FVEYSRLEDAAEALK 151
G FVE++ A +AL+
Sbjct: 191 RGRATGKGFVEFAAKPPARKALE 213
Score = 63 (27.2 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 24/78 (30%), Positives = 30/78 (38%)
Query: 309 GTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPN-NFAGHLQPADIRGPSMPMRSIGAHGGH 367
G GPR + GD P+ GP M N N G L P GP M GA
Sbjct: 394 GDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNRGTL-PGPAMGPGPSMGPEGAANMG 452
Query: 368 ETLLSGPDFKDFHSMQDP 385
++ PD H+ + P
Sbjct: 453 TPMM--PDNGTVHNERFP 468
Score = 38 (18.4 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 467 GLGSITGGPASGAF 480
G+G+++GGP G F
Sbjct: 494 GVGTVSGGP--GGF 505
>UNIPROTKB|Q5ZK88 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0016363 InterPro:IPR012975
Pfam:PF08075 eggNOG:NOG298586 HOGENOM:HOG000231095
HOVERGEN:HBG009801 CTD:55269 OrthoDB:EOG444KKN EMBL:AJ720196
IPI:IPI00584056 RefSeq:NP_001026002.1 UniGene:Gga.4178 HSSP:Q99K48
ProteinModelPortal:Q5ZK88 SMR:Q5ZK88 PRIDE:Q5ZK88 GeneID:418955
KEGG:gga:418955 InParanoid:Q5ZK88 NextBio:20822076 Uniprot:Q5ZK88
Length = 523
Score = 158 (60.7 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 46/143 (32%), Positives = 68/143 (47%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAK 73
+K L+VGNL D T+ D K LF ++G +V R F F+ + A+ AK
Sbjct: 74 EKSYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAK 133
Query: 74 DALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD- 132
L G+ + P++I FA L V +S VS E LE+ F +FG +E + D
Sbjct: 134 AELDGTILKSRPLRIRFATHGAA---LTVKNLSPVVSNELLEQAFSQFGPVERAVVVVDD 190
Query: 133 -GNTA---FVEYSRLEDAAEALK 151
G FVE++ A +AL+
Sbjct: 191 RGRATGKGFVEFAAKPPARKALE 213
Score = 63 (27.2 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 24/78 (30%), Positives = 30/78 (38%)
Query: 309 GTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPN-NFAGHLQPADIRGPSMPMRSIGAHGGH 367
G GPR + GD P+ GP M N N G L P GP M GA
Sbjct: 394 GDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNRGTL-PGPAMGPGPSMGPEGAANMG 452
Query: 368 ETLLSGPDFKDFHSMQDP 385
++ PD H+ + P
Sbjct: 453 TPMM--PDNGTVHNERFP 468
Score = 38 (18.4 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 467 GLGSITGGPASGAF 480
G+G+++GGP G F
Sbjct: 494 GVGTVSGGP--GGF 505
>UNIPROTKB|F1N941 [details] [associations]
symbol:PSPC1 "Paraspeckle component 1" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 OMA:DNREQEM EMBL:AADN02005081
EMBL:AADN02005082 EMBL:AADN02005083 EMBL:AADN02005084
IPI:IPI00819057 Ensembl:ENSGALT00000036438 ArrayExpress:F1N941
Uniprot:F1N941
Length = 524
Score = 158 (60.7 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 46/143 (32%), Positives = 68/143 (47%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAK 73
+K L+VGNL D T+ D K LF ++G +V R F F+ + A+ AK
Sbjct: 74 EKSYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAK 133
Query: 74 DALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD- 132
L G+ + P++I FA L V +S VS E LE+ F +FG +E + D
Sbjct: 134 AELDGTILKSRPLRIRFATHGAA---LTVKNLSPVVSNELLEQAFSQFGPVERAVVVVDD 190
Query: 133 -GNTA---FVEYSRLEDAAEALK 151
G FVE++ A +AL+
Sbjct: 191 RGRATGKGFVEFAAKPPARKALE 213
Score = 63 (27.2 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 24/78 (30%), Positives = 30/78 (38%)
Query: 309 GTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPN-NFAGHLQPADIRGPSMPMRSIGAHGGH 367
G GPR + GD P+ GP M N N G L P GP M GA
Sbjct: 395 GDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNRGTL-PGPAMGPGPSMGPEGAANMG 453
Query: 368 ETLLSGPDFKDFHSMQDP 385
++ PD H+ + P
Sbjct: 454 TPMM--PDNGTVHNERFP 469
Score = 38 (18.4 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 467 GLGSITGGPASGAF 480
G+G+++GGP G F
Sbjct: 495 GVGTVSGGP--GGF 506
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 169 (64.5 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 54/177 (30%), Positives = 92/177 (51%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGA-LDKVTTYSS-------RSFAFVYFKRVEDAK 70
P+ L+VGN+ ++ E FGK A L +V YSS R F F+ ++ + A
Sbjct: 243 PNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIYSSPDDKKKNRGFCFLEYESHKAAS 302
Query: 71 AAKDALQGSDFR--GNPIKIEFARPAK-PS-------KHLWVGGISQTVSKEELEEGFLK 120
AK L + G I +++A P + P K L+V ++Q VS+++L+E F +
Sbjct: 303 LAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQDVSEDKLKEQFEQ 362
Query: 121 FGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
+G +E K +KD AF+ + + A EA++ +NG++IG + V L PS +++
Sbjct: 363 YGKVERVKKIKD--YAFIHFEDRDSAVEAMRGLNGKEIGASNIEVS-LAKPPSDKKK 416
Score = 51 (23.0 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 707 AAAISQAGV--KLTPELIATLTSLIPATKSAEVAPGSSSARPLLAEPHVQSIEQLGNHYN 764
AAA++Q G + P ++P SA G+ +PL P V + G H N
Sbjct: 610 AAAVAQRGATGQGAPAATGGFRGVLPTRPSAR---GTQHVKPLQNLPVVGKRKFDGGHQN 666
Query: 765 P 765
P
Sbjct: 667 P 667
Score = 45 (20.9 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 298 APGKDYPGSYSGTKG--PRSEMFFGDQ-IRPSQ-LDMLGPNQSMQPNNFAGHLQPADIRG 353
A G+ P + G +G P G Q ++P Q L ++G + GH PAD++
Sbjct: 618 ATGQGAPAATGGFRGVLPTRPSARGTQHVKPLQNLPVVGKRKFD-----GGHQNPADVKR 672
Query: 354 PSMPMRSIGAHGG 366
P IG +GG
Sbjct: 673 -RYPSGLIG-NGG 683
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 160 (61.4 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 47/175 (26%), Positives = 91/175 (52%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKA 71
P+++L+VG+L D T+A L E F G + D +T+ SS ++A+V F+ +DA+
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-NYAYVNFQHTKDAEH 67
Query: 72 AKDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIED 126
A D + +G P++I +++ P+ +++V + ++++ + L + FGNI
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 127 FKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
+ D N + FV + E A A+K +NG + G ++ V +S+ R +
Sbjct: 128 CNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Score = 116 (45.9 bits), Expect = 0.00085, P = 0.00085
Identities = 32/71 (45%), Positives = 41/71 (57%)
Query: 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDA 69
KE P N+++ N D D LK+LFGKFG AL KV T S + F FV F+R EDA
Sbjct: 188 KEFP---NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 70 KAAKDALQGSD 80
+ A D + G +
Sbjct: 245 QKAVDEMNGKE 255
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 164 (62.8 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 49/184 (26%), Positives = 93/184 (50%)
Query: 11 AYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYF 63
A D ++ +NL V L + T +L+ LF G + DKV +S + FV +
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL-GYGFVNY 68
Query: 64 KRVEDAKAAKDALQGSDFRGNPIKIEFARPAKP---SKHLWVGGISQTVSKEELEEGFLK 120
+DA+ A + L G + IK+ +ARP+ +L++ G+ + ++++++E+ F +
Sbjct: 69 VTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSR 128
Query: 121 FGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQP 172
FG I + + L D T AF+ + + +A EA+ + NG + G E + V F + P
Sbjct: 129 FGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA-ANP 187
Query: 173 SRRE 176
++ +
Sbjct: 188 NQNK 191
Score = 101 (40.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 32/109 (29%), Positives = 56/109 (51%)
Query: 7 KFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL--DKV----TTYSSRSFAF 60
K + A E +NL++ L + T D++++F +FG + +V TT SR AF
Sbjct: 92 KVSYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAF 151
Query: 61 VYFKRVEDAKAAKDALQGSDFRGN--PIKIEFARPAKPSKHLWVGGISQ 107
+ F + +A+ A + G G+ PI ++FA A P+++ V +SQ
Sbjct: 152 IRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA--ANPNQNKNVALLSQ 198
Score = 81 (33.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/74 (28%), Positives = 40/74 (54%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNI 153
+++ + Q + L + F FG + + K ++D NT FV + E+AA A+ ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 154 NGRQIGGEQLRVDF 167
NG ++G + L+V F
Sbjct: 306 NGYRLGDKILQVSF 319
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 169 (64.5 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 55/183 (30%), Positives = 86/183 (46%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGALD--KVTTYS---SRSFAFVYFKRVEDAKAAKDAL 76
N++V NL T+A L+++F KFG + KV T SR + FV F++ + A AA L
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 77 QGSDFRGNPI-------KIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129
+ I K + +P + +L++ + VS++ L E F +FG I
Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232
Query: 130 LKDGNT-----AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR----REQWPN 180
KD N AFV + EDA A + +NG + G + L V + + R REQ+
Sbjct: 233 AKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKE 292
Query: 181 SHD 183
H+
Sbjct: 293 KHE 295
Score = 131 (51.2 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 46/166 (27%), Positives = 83/166 (50%)
Query: 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT----TYSSRSFAFVY--FKRVEDAK 70
+P +++L+VG+L T+ L + F +F +L V S RS + Y F +DA
Sbjct: 20 SPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDAN 79
Query: 71 AAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGI-----SQTVSKEELEEGFLKFGNIE 125
A + S G I++ ++ A ++ VG + ++V+ L++ F KFGNI
Sbjct: 80 LAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIV 139
Query: 126 DFKF--LKDGNT---AFVEYSRLEDAAEA-LKNINGRQIGGEQLRV 165
K L+DG + FV++ + EDAA A ++ +N + +++ V
Sbjct: 140 SCKVATLEDGKSRGYGFVQFEQ-EDAAHAAIQTLNSTIVADKEIYV 184
Score = 62 (26.9 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 234 MDEQMLHNAMILFGEIERI-----KSYPSRNYSFVEFRSVDEARRAKEGLQGRLF 283
+ E +L FG+I + ++ R Y+FV F + ++ARRA E + G F
Sbjct: 212 VSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKF 266
>UNIPROTKB|F1RN28 [details] [associations]
symbol:PSPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042382 "paraspeckles" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0042382 InterPro:IPR012975 Pfam:PF08075
GeneTree:ENSGT00390000005004 OMA:DNREQEM EMBL:CU928808
Ensembl:ENSSSCT00000010490 Uniprot:F1RN28
Length = 460
Score = 157 (60.3 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 45/134 (33%), Positives = 66/134 (49%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR 82
L+VGNL D T+ D K LF ++G +V R F F+ + A+ AK L G+ +
Sbjct: 82 LFVGNLPTDITEDDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILK 141
Query: 83 GNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD--GNTA---F 137
P++I FA L V +S VS E LE+ F +FG +E + D G F
Sbjct: 142 SRPLRIRFATHGAA---LTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGF 198
Query: 138 VEYSRLEDAAEALK 151
VE++ A +AL+
Sbjct: 199 VEFAAKPPARKALE 212
Score = 57 (25.1 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 19/56 (33%), Positives = 22/56 (39%)
Query: 309 GTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPN-NFAGHLQPADIRGPSMPMRSIGA 363
G GPR + GD P+ GP M N N G + P GP M GA
Sbjct: 392 GDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNRGTI-PGPPMGPGPAMGPEGA 446
>FB|FBgn0040284 [details] [associations]
symbol:SF2 "SF2" species:7227 "Drosophila melanogaster"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007095 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104103 KO:K12890 OMA:MPRGGSE ChiTaRS:SRSF1
EMBL:AF232773 EMBL:AF234157 EMBL:AY051919 RefSeq:NP_001247139.1
RefSeq:NP_652611.1 UniGene:Dm.4443 SMR:Q9V3W7 IntAct:Q9V3W7
MINT:MINT-336709 STRING:Q9V3W7 EnsemblMetazoa:FBtr0083272
EnsemblMetazoa:FBtr0304727 GeneID:53443 KEGG:dme:Dmel_CG6987
UCSC:CG6987-RA CTD:53443 FlyBase:FBgn0040284 InParanoid:Q9V3W7
OrthoDB:EOG41VHK9 GenomeRNAi:53443 NextBio:841181 Uniprot:Q9V3W7
Length = 255
Score = 123 (48.4 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRS--FAFVYFKRVEDAKAAKDALQGSD 80
++VGNL D D+++LF KFG + V + R FAFV F+ DA A A G D
Sbjct: 9 IYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGYD 68
Query: 81 FRGNPIKIEFARPAKPSKH 99
+ G +++EF R P +
Sbjct: 69 YDGYRLRVEFPRGGGPGSY 87
Score = 83 (34.3 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 36/133 (27%), Positives = 61/133 (45%)
Query: 93 PAKPSKH-LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALK 151
PAK S++ + V G+ + S ++L++ + G++ KDG+ VE+ R ED A+K
Sbjct: 109 PAKRSQYRVMVTGLPASGSWQDLKDHMREAGDVCFADTYKDGS-GVVEFLRHEDMKYAIK 167
Query: 152 NINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSA-YK-RSHPQ 209
++ + + V ++R R + N G G G G S Y+ RS +
Sbjct: 168 KLDDSRFRSHEGEVAYIRV---REDSGDNDRGGGGGGSGGGGGGSGGGGSRDYRDRSRSR 224
Query: 210 SSVGR-NRDGPPS 221
S R R G P+
Sbjct: 225 SFSSRPRRRGTPT 237
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 165 (63.1 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 66/269 (24%), Positives = 108/269 (40%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDK----VTTYSSRSFAFVYFKRVEDAKAAKDALQG 78
L+VGNLS D T+A + +LF + G + T + + FV F A AA A+ G
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 64
Query: 79 SDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKF-GNIEDFKFLKDGNTAF 137
G +K+ +A PS S VS + ++ F F G++ +D AF
Sbjct: 65 RKIMGKEVKVNWA--TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 122
Query: 138 VEYSRLEDAAEALKNINGRQIGGEQL----RVDFLRSQPSRREQWPNSHDARDGPIIGRG 193
+ R+ DA G+ G + + D + QW R +
Sbjct: 123 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 182
Query: 194 TGFSDNHSAYKRSHPQSSVGR--NRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIER 251
S Y+ + Q S ++ P + ++ G S + EQ++ FG+I
Sbjct: 183 PA---PKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTS-GLTEQLMRQTFSPFGQIME 238
Query: 252 IKSYPSRNYSFVEFRSVDEARRAKEGLQG 280
I+ +P + YSF+ F S + A A + G
Sbjct: 239 IRVFPDKGYSFIRFSSHESAAHAIVSVNG 267
Score = 94 (38.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 17/65 (26%), Positives = 37/65 (56%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIG 159
++ GG++ ++++ + + F FG I + + D +F+ +S E AA A+ ++NG I
Sbjct: 212 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAIVSVNGTTIE 271
Query: 160 GEQLR 164
G ++
Sbjct: 272 GHVVK 276
Score = 79 (32.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGALDK------VTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++VG+LS + T D+K F FG + + T S+ + FV F DA+ A
Sbjct: 103 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 162
Query: 76 LQGSDFRGNPIKIEFA--RPAKP 96
+ G G I+ +A +P P
Sbjct: 163 MGGQWLGGRQIRTNWATRKPPAP 185
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 150 (57.9 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 44/174 (25%), Positives = 86/174 (49%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G P++I +++ P+ ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 128 KFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K + D N + FV + E A A++ +NG + ++ V +S+ R +
Sbjct: 129 KVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 125 (49.1 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LK+LFGKFG AL KV T S + F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRGNPIKI 88
+ G + G I +
Sbjct: 251 MNGKELNGKQIYV 263
Score = 88 (36.0 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K + +G + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 355 GRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Score = 51 (23.0 bits), Expect = 8.2e-09, Sum P(3) = 8.2e-09
Identities = 27/111 (24%), Positives = 45/111 (40%)
Query: 325 PSQLDMLGPN-----QSMQPN---NFAGHLQPADIRGPSMPMRSIGAHGGH----ETLLS 372
PSQ+ L P+ Q +P+ N G ++PA R P MR + + +
Sbjct: 425 PSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVEV 484
Query: 373 GPDFKDFHSMQDPNAKNLDPN--WRRPSPSPGIRTSP----TQGIRQPLNH 417
G F + S + + + + P + +P +RT P G+R P H
Sbjct: 485 GLQF-EITSSANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQH 534
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 162 (62.1 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 58/207 (28%), Positives = 95/207 (45%)
Query: 6 SKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFA 59
SK N + + ++ +++G LS DT+ DL E +FG + T T SR F
Sbjct: 18 SKINASKNQQD---DGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 74
Query: 60 FVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK---PSKHLWVGGISQTVSKEEL 114
FV FK DA + + L+ + + G I + A+ K P K ++VGG+S S+E++
Sbjct: 75 FVLFK---DAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQI 131
Query: 115 EEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168
+E F FG IE+ + D T F+ Y+ E + L++ QIG + +
Sbjct: 132 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEIKVA 190
Query: 169 RSQPSRREQWPNSHDARDGPIIGRGTG 195
+ + R+Q + GRG G
Sbjct: 191 QPKEVYRQQQQQQKGGKSNASGGRGGG 217
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 144 (55.7 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 37/120 (30%), Positives = 60/120 (50%)
Query: 24 WVGNLSADTTDADLKELFGKFGALDK----VTTYSSRSFAFVYFKRVEDAKAAKDALQGS 79
+VGNLS D T+A + +LF + G + T + + FV F A AA A+ G
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGR 61
Query: 80 DFRGNPIKIEFAR-PAKPSK------HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
G +K+ +A P+ K H++VG +S ++ E+++ F FG I D + +KD
Sbjct: 62 KIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKD 121
>WB|WBGene00004700 [details] [associations]
symbol:rsp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 124 (48.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSR--SFAFVYFKRVEDAKAAKDALQGSD 80
++VGNL D + +++++F K+G + V S R +FAFV F+ DA+ A A G +
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70
Query: 81 FRGNPIKIEFARPAKP 96
F G I++EF R P
Sbjct: 71 FDGRRIRVEFTRGVGP 86
Score = 116 (45.9 bits), Expect = 0.00087, P = 0.00087
Identities = 47/196 (23%), Positives = 86/196 (43%)
Query: 92 RPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIE--DFKFLKDGNTAFVEYSRLEDAAEA 149
R + ++VG + V ++E+E+ F K+G I+ D K + AFVE+ DA +A
Sbjct: 3 RGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDA 62
Query: 150 LKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQ 209
++ +G + G ++RV+F R R P +DG RG F + PQ
Sbjct: 63 VRARDGYEFDGRRIRVEFTRGVGPRG---PGGRPLQDGGD-HRGGDFRGGRGGGRGGGPQ 118
Query: 210 SSVGRNRDGPPSKILWVGYPPS---VQMDEQMLHNAMILFGEIERIKS--YPSRNYSFVE 264
G +++ G PP+ + + M + + ++ R + Y V+
Sbjct: 119 RRTGY-------RVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVK 171
Query: 265 F--RSVDEAR-RAKEG 277
+ R +D+ + R+ EG
Sbjct: 172 YAVRKLDDTKFRSHEG 187
Score = 81 (33.6 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 37/147 (25%), Positives = 66/147 (44%)
Query: 77 QGSDFRGNPIKIEFARPAKPSKH-LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT 135
+G DFRG P + + + + V G+ T S ++L++ G++ +DG T
Sbjct: 101 RGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDG-T 159
Query: 136 AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTG 195
VE++R ED A++ ++ + + ++R RE NS G GR
Sbjct: 160 GVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRV----RED--NSSGGGSGGG-GRDRS 212
Query: 196 FSDNHSAYKRSHPQSSVGRNRDGPPSK 222
S + A +R+ P+ S R+R S+
Sbjct: 213 RSRSPRAERRASPKYSPRRSRSRSRSR 239
>UNIPROTKB|Q9NEW6 [details] [associations]
symbol:rsp-3 "Probable splicing factor,
arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 124 (48.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSR--SFAFVYFKRVEDAKAAKDALQGSD 80
++VGNL D + +++++F K+G + V S R +FAFV F+ DA+ A A G +
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYE 70
Query: 81 FRGNPIKIEFARPAKP 96
F G I++EF R P
Sbjct: 71 FDGRRIRVEFTRGVGP 86
Score = 116 (45.9 bits), Expect = 0.00087, P = 0.00087
Identities = 47/196 (23%), Positives = 86/196 (43%)
Query: 92 RPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIE--DFKFLKDGNTAFVEYSRLEDAAEA 149
R + ++VG + V ++E+E+ F K+G I+ D K + AFVE+ DA +A
Sbjct: 3 RGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDA 62
Query: 150 LKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQ 209
++ +G + G ++RV+F R R P +DG RG F + PQ
Sbjct: 63 VRARDGYEFDGRRIRVEFTRGVGPRG---PGGRPLQDGGD-HRGGDFRGGRGGGRGGGPQ 118
Query: 210 SSVGRNRDGPPSKILWVGYPPS---VQMDEQMLHNAMILFGEIERIKS--YPSRNYSFVE 264
G +++ G PP+ + + M + + ++ R + Y V+
Sbjct: 119 RRTGY-------RVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYEDVK 171
Query: 265 F--RSVDEAR-RAKEG 277
+ R +D+ + R+ EG
Sbjct: 172 YAVRKLDDTKFRSHEG 187
Score = 81 (33.6 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 37/147 (25%), Positives = 66/147 (44%)
Query: 77 QGSDFRGNPIKIEFARPAKPSKH-LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT 135
+G DFRG P + + + + V G+ T S ++L++ G++ +DG T
Sbjct: 101 RGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDG-T 159
Query: 136 AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTG 195
VE++R ED A++ ++ + + ++R RE NS G GR
Sbjct: 160 GVVEFTRYEDVKYAVRKLDDTKFRSHEGETAYIRV----RED--NSSGGGSGGG-GRDRS 212
Query: 196 FSDNHSAYKRSHPQSSVGRNRDGPPSK 222
S + A +R+ P+ S R+R S+
Sbjct: 213 RSRSPRAERRASPKYSPRRSRSRSRSR 239
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 163 (62.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 40/110 (36%), Positives = 61/110 (55%)
Query: 5 PSKFNRAYDDKEAPPSSNLWVG--NLSADTTDADLKELFGKFGALDKVT-TYS-----SR 56
P R + A P N +G LS TT++DL+E+F K+G + V+ Y SR
Sbjct: 92 PMSTRRRHVGNRANPDPNCCLGVFGLSLYTTESDLREVFSKYGPIADVSIVYDQQSRRSR 151
Query: 57 SFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA---RPAKPSKHLWVG 103
FAFVYF+ V+DAK AK+ G + G I+++F+ RP P+ +++G
Sbjct: 152 GFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 201
Score = 38 (18.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 387 AKNLDPNWRRPSPSP 401
A++ D +RR SPSP
Sbjct: 245 AQDRDQIYRRRSPSP 259
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 161 (61.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 66/224 (29%), Positives = 107/224 (47%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFG-ALD---KVT--TYSSR 56
P SK N + + ++ +++G LS DT+ DL + +FG LD K T SR
Sbjct: 15 PEGSKINASKNQED---DGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSR 71
Query: 57 SFAFVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK---PSKHLWVGGISQTVSK 111
F FV FK DA++ L+ ++ + G I + A+ K P K ++VGG+S +++
Sbjct: 72 GFGFVLFK---DAESVDRVLELTEHKLDGKLIDPKRAKAIKGKEPPKKVFVGGLSPDITE 128
Query: 112 EELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIG-GE-QL 163
E+L E F +G IE + D T FV ++ LE+ + L QIG G+ ++
Sbjct: 129 EQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFA-LEEPVQKLLENRYHQIGSGKCEI 187
Query: 164 RV----DFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAY 203
+V + R Q +R + G GRG GF+ ++ Y
Sbjct: 188 KVAQPKEVYRQQQNRDRGFGGGRGGFRGRG-GRGQGFNQGYNNY 230
>ZFIN|ZDB-GENE-030131-713 [details] [associations]
symbol:nono "non-POU domain containing,
octamer-binding" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-713
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012975
Pfam:PF08075 HSSP:P52298 GeneTree:ENSGT00390000005004 CTD:4841
HOGENOM:HOG000231095 HOVERGEN:HBG009801 KO:K13214 OMA:LEFEMES
EMBL:BX470076 EMBL:BX511098 EMBL:BC046880 IPI:IPI00498278
RefSeq:NP_963873.1 UniGene:Dr.150274 SMR:Q802Z5
Ensembl:ENSDART00000011699 GeneID:321994 KEGG:dre:321994
InParanoid:Q802Z5 NextBio:20807618 Uniprot:Q802Z5
Length = 441
Score = 165 (63.1 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 48/142 (33%), Positives = 67/142 (47%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAK 73
+K S L+VGNL A TT+ D+++LF K+G ++ R F F+ + A AK
Sbjct: 65 EKTYTQRSRLFVGNLPAGTTEEDVEKLFSKYGKASEIFINKDRGFGFIRLETKTLADIAK 124
Query: 74 DALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG 133
L + FRG I++ FA L V + Q VS E LEE F FG IE + D
Sbjct: 125 AELDDTIFRGRQIRVRFATHGAA---LTVKNLPQFVSNELLEEAFSMFGPIERAIVIVDD 181
Query: 134 N-----TAFVEYSRLEDAAEAL 150
VE++ A +AL
Sbjct: 182 RGRPTGKGIVEFANKPSARKAL 203
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 162 (62.1 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 54/187 (28%), Positives = 84/187 (44%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDAL 76
++VG LS DT+ DLK+ F KFG + T T SR F F+ FK DA++ L
Sbjct: 66 MFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFK---DAESVDKVL 122
Query: 77 QGSDFR--GNPI--KIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ + R G I K A P K ++VGG++ ++++ E F FG IE + D
Sbjct: 123 EHKEHRLDGRLIDPKKAMAMKKDPIKKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMD 182
Query: 133 GNT------AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARD 186
T F+ + ED + + + G + + +QP +E + + R
Sbjct: 183 PKTNKRRGFVFITFKE-EDPVKKILEKKFHNVSGSKCEIKI--AQP--KEVYQQQYGGRG 237
Query: 187 GPIIGRG 193
G GRG
Sbjct: 238 GSFGGRG 244
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 143 (55.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 35/105 (33%), Positives = 57/105 (54%)
Query: 10 RAYDDKEAPPSSNLWVG--NLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFV 61
R + A P N +G LS TT+ DL+E+F ++G L V T SR FAFV
Sbjct: 5 RRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 64
Query: 62 YFKRVEDAKAAKDALQGSDFRGNPIKIEFA---RPAKPSKHLWVG 103
YF+R++D+K A + G + G I+++++ R P+ +++G
Sbjct: 65 YFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 109
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 143 (55.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 35/105 (33%), Positives = 57/105 (54%)
Query: 10 RAYDDKEAPPSSNLWVG--NLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFV 61
R + A P N +G LS TT+ DL+E+F ++G L V T SR FAFV
Sbjct: 5 RRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFV 64
Query: 62 YFKRVEDAKAAKDALQGSDFRGNPIKIEFA---RPAKPSKHLWVG 103
YF+R++D+K A + G + G I+++++ R P+ +++G
Sbjct: 65 YFERIDDSKEAMERANGMELDGRRIRVDYSITKRAHTPTPGIYMG 109
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 163 (62.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 48/173 (27%), Positives = 87/173 (50%)
Query: 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVEDAKA 71
P SS+L+VG+L + ++ L E+F + G + + T S S+A+V + DA+
Sbjct: 7 PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAER 66
Query: 72 AKDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIED 126
A D L + RG +I +++ P+ ++++ + + + + L + F FGNI
Sbjct: 67 ALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILS 126
Query: 127 FKFLKD-GNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174
K + D GN++ FV Y E A +A+ +NG I G+++ V +S R
Sbjct: 127 CKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKER 179
Score = 99 (39.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 26/93 (27%), Positives = 44/93 (47%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKN 152
+L++ I ++ ++L E F +FG I +KD FV Y+ ++A A+
Sbjct: 285 NLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTE 344
Query: 153 INGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
+NGR IG + L V + + RR Q H +
Sbjct: 345 MNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQK 377
Score = 89 (36.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDA 75
+N++ NLS D LKEL ++G + +T + S+ F F F+ E AK +
Sbjct: 188 TNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVEN 247
Query: 76 LQGSDFRGNPI 86
G F G PI
Sbjct: 248 ENGKIFHGKPI 258
Score = 52 (23.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 253 KSYPSRNYSFVEFRSVDEARRAKEGLQGRL 282
K+ S+ + FV + + DEA RA + GR+
Sbjct: 320 KATTSKGFGFVCYTAPDEATRAVTEMNGRM 349
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 150 (57.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 44/174 (25%), Positives = 86/174 (49%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G P++I +++ P+ ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 128 KFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K + D N + FV + E A A++ +NG + ++ V +S+ R +
Sbjct: 129 KVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 128 (50.1 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LKELFGKFG AL KV T S + F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRGNPIKI 88
+ G + G I +
Sbjct: 251 MNGKELNGKQIYV 263
Score = 88 (36.0 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K + +G + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 355 GRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Score = 46 (21.3 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 25/107 (23%), Positives = 41/107 (38%)
Query: 325 PSQLDMLGPN-----QSMQPN---NFAGHLQPADIRGPSMPMRSIGAHGGHETLLSGPDF 376
PSQ+ L P+ Q +P+ N G ++PA R P MR + P
Sbjct: 425 PSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQV--------PRV 476
Query: 377 KDFHSMQDPNAKNLDPN--WRRPSPSPGIRTSP----TQGIRQPLNH 417
+ + + + + P + +P +RT P G+R P H
Sbjct: 477 MSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQH 523
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 150 (57.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 44/174 (25%), Positives = 86/174 (49%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G P++I +++ P+ ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 128 KFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K + D N + FV + E A A++ +NG + ++ V +S+ R +
Sbjct: 129 KVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 128 (50.1 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LKELFGKFG AL KV T S + F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRGNPIKI 88
+ G + G I +
Sbjct: 251 MNGKELNGKQIYV 263
Score = 88 (36.0 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K + +G + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 355 GRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Score = 46 (21.3 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 25/107 (23%), Positives = 41/107 (38%)
Query: 325 PSQLDMLGPN-----QSMQPN---NFAGHLQPADIRGPSMPMRSIGAHGGHETLLSGPDF 376
PSQ+ L P+ Q +P+ N G ++PA R P MR + P
Sbjct: 425 PSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQV--------PRV 476
Query: 377 KDFHSMQDPNAKNLDPN--WRRPSPSPGIRTSP----TQGIRQPLNH 417
+ + + + + P + +P +RT P G+R P H
Sbjct: 477 MSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQH 523
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 162 (62.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 58/207 (28%), Positives = 95/207 (45%)
Query: 6 SKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFA 59
SK N + + ++ +++G LS DT+ DL E +FG + T T SR F
Sbjct: 54 SKINASKNQQD---DGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 110
Query: 60 FVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK---PSKHLWVGGISQTVSKEEL 114
FV FK DA + + L+ + + G I + A+ K P K ++VGG+S S+E++
Sbjct: 111 FVLFK---DAASVEKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQI 167
Query: 115 EEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168
+E F FG IE+ + D T F+ Y+ E + L++ QIG + +
Sbjct: 168 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEIKVA 226
Query: 169 RSQPSRREQWPNSHDARDGPIIGRGTG 195
+ + R+Q + GRG G
Sbjct: 227 QPKEVYRQQQQQQKGGKSNASGGRGGG 253
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 145 (56.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 45/174 (25%), Positives = 83/174 (47%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGAL------DKVTTYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + V T S +A++ F++ DA+ A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G PI+I +++ P ++++ + ++ + L + F FGNI
Sbjct: 69 LDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 128 KFLKD--GNTAF--VEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K D G+ F V + E A +A+ +NG + ++ V +S+ R +
Sbjct: 129 KVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAE 182
Score = 62 (26.9 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 232 VQMDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEFRSVDEARRAKEGLQGR 281
V +DEQ L + FG++ +K S SR + FV F +EA++A + G+
Sbjct: 200 VDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGK 254
>UNIPROTKB|F1Q262 [details] [associations]
symbol:SPEN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063730 EMBL:AAEX03001862 EMBL:AAEX03001863
Ensembl:ENSCAFT00000025602 Uniprot:F1Q262
Length = 3297
Score = 186 (70.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 45/158 (28%), Positives = 78/158 (49%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL---DKVTTYSSRSFAFVYFKRVEDA 69
D+ + L++GNL TT DL+ +F +FG + D +AF+ + +
Sbjct: 487 DEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASV 546
Query: 70 KAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129
A + G N +K+ F + + P+ +W+ G+S VS + L F ++G + F
Sbjct: 547 CKAIKKMDGEYLGNNRLKLGFGK-SMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVF 605
Query: 130 LKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167
+ A V Y+ +E A A+K GR+IGG +++VDF
Sbjct: 606 DRLKGMALVLYNEIEYAQAAVKETKGRKIGGNKIKVDF 643
Score = 52 (23.4 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 34/169 (20%), Positives = 63/169 (37%)
Query: 638 VPPQTVDKQNIPPPHA---EYGLTRPKEEHVLPVDYNRFSHDDSKVQSKMHFPHASEPLI 694
V PQ K+N A E G + ++ + D N +V K S+
Sbjct: 2076 VSPQLNVKENNTKSKADKEEAGSEQKRDRKEMSTDKNAPEAPAVEVVEKKAPEKNSKSKR 2135
Query: 695 AHSSSMDYGSNNAAAISQAGVKLTPELIATLTSLIPATKSAEVAPGSSSARPLLAEPHVQ 754
S + + +A + ++P + A T P K AEV G + +
Sbjct: 2136 GRSRNARSAVDKSANLKNVDTSVSPSVAAGATGP-PVEKEAEVVAGPAEKSENPPKEGGF 2194
Query: 755 SIEQLGNHYNPQAQSLTHHYASMSSTPSHSAQMLLGNNQLQESTASLSQ 803
S E + + P + + +STPS A L +L+++ ++++
Sbjct: 2195 SAE-VSSDPAPANKDVEEKEDVSASTPSPEANQLAKQMELEQAVENIAK 2242
Score = 47 (21.6 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 727 SLIPATKSAEVAPGSSSARPLLAEP 751
+L P TK++++ SS+ R +L +P
Sbjct: 2582 ALPPDTKASDIDTSSSTLRKILMDP 2606
Score = 46 (21.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 719 PELIATLTSLIPATKSAEVAPGSSSARPLLAEPHVQSIEQLGNHYNPQAQS 769
P +T T IP+ +A++ P +S P + E + P+AQS
Sbjct: 2527 PSDSSTPTPTIPSVTAAKLPPPVTSGGVPHQSPPAKVTEWITRQEEPRAQS 2577
Score = 38 (18.4 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 201 SAYKRSHPQSSVGRNRDGPPSKIL-WV 226
+A K P +S G PP+K+ W+
Sbjct: 2541 TAAKLPPPVTSGGVPHQSPPAKVTEWI 2567
Score = 37 (18.1 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 911 GQGTSDGEVDKNQRYQSTLQFAANXXXXXXXXXXTNSPA 949
G T DG+ +Q ++ L A N PA
Sbjct: 2262 GSSTEDGDKPAHQASETELAAAIGSIINDISGEAENFPA 2300
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 144 (55.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 45/171 (26%), Positives = 82/171 (47%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGAL------DKVTTYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + V T S +A++ F++ DA+ A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G PI+I +++ P ++++ + ++ + L + F FGNI
Sbjct: 69 LDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 128 KFLKD--GNTAF--VEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174
K + D G+ F V + E A A+ +NG + ++ V +S+ R
Sbjct: 129 KVVCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRRER 179
Score = 102 (41.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 38/147 (25%), Positives = 65/147 (44%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + ++ E+L + F +G I K + +G + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR-------DGPIIGRGTGFSDNHSAYKRSH 207
GR +G + L V + + R+ N + R GPI+G F S + +
Sbjct: 355 GRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRALGGPILG---SFQQPASYFLPAV 411
Query: 208 PQ--SSVGRNRDGPPSKIL--WVGYPP 230
PQ + GPP + W PP
Sbjct: 412 PQPPAQAPYYGSGPPIQPAPRWTAQPP 438
Score = 87 (35.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDA 75
+N++V NL D + L++LF +FG + V SR F FV F++ E+A+ A
Sbjct: 191 TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVN 250
Query: 76 LQGSDFRG 83
+ G + G
Sbjct: 251 MNGREVSG 258
Score = 72 (30.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 232 VQMDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEFRSVDEARRAKEGLQGR 281
V +DEQ L + FG++ +K S SR + FV F +EA++A + GR
Sbjct: 200 VDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGR 254
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 142 (55.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 41/113 (36%), Positives = 56/113 (49%)
Query: 23 LWVGNLSADTTDADLKELFGKFGA-------LDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++G LS DTT DLK+ F KFG LD +T SR F FV FK E D
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG-RSRGFGFVLFKESESVDKVMDQ 59
Query: 76 LQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIE 125
+ G I + A+ K P K ++VGG+S +E++ E F FG +E
Sbjct: 60 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVE 111
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 160 (61.4 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 47/175 (26%), Positives = 91/175 (52%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKA 71
P+++L+VG+L D T+A L E F G + D +T+ SS ++A+V F+ +DA+
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-NYAYVNFQHTKDAEH 67
Query: 72 AKDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIED 126
A D + +G P++I +++ P+ +++V + ++++ + L + FGNI
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 127 FKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
+ D N + FV + E A A+K +NG + G ++ V +S+ R +
Sbjct: 128 CNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Score = 126 (49.4 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 34/79 (43%), Positives = 44/79 (55%)
Query: 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDA 69
KE P N+++ N D D LK+LFGKFG AL KV T S + F FV F+R EDA
Sbjct: 188 KEFP---NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 70 KAAKDALQGSDFRGNPIKI 88
+ A D + G + G I +
Sbjct: 245 QKAVDEMNGKELNGKQIYV 263
Score = 95 (38.5 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 35/138 (25%), Positives = 61/138 (44%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K + +G + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIG----RG--TGF-------SDNHS 201
GR + + L V + + R+ N + R + R +G+ + NH+
Sbjct: 355 GRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHA 414
Query: 202 AYKRSHPQSSVGRNRDGP 219
AY +P S + R R P
Sbjct: 415 AY---YPPSQIARLRPSP 429
Score = 40 (19.1 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 21/92 (22%), Positives = 34/92 (36%)
Query: 726 TSLIPATKSAEVAPGSSSARPLLAEPHVQSIEQL---GNHYNPQAQSLTHHYASMSSTPS 782
T + T + V P ++A A P V+++ + NPQ +M
Sbjct: 473 TQRVANTSTQTVGPRPAAAAAAAATPAVRTVPRYKYAAGVRNPQQHRNAQPQVTMQQLAV 532
Query: 783 H-SAQMLLGNNQLQESTASLSQQGMVYSRPLP 813
H Q L ++L S Q+ M+ R P
Sbjct: 533 HVQGQETLTASRLA-SAPPQKQKQMLGERLFP 563
>UNIPROTKB|E1BV40 [details] [associations]
symbol:Gga.17720 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 InterPro:IPR010912 GeneTree:ENSGT00530000063730
EMBL:AADN02040740 EMBL:AADN02040741 EMBL:AADN02040742
EMBL:AADN02040743 EMBL:AADN02040744 EMBL:AADN02040745
IPI:IPI00820922 Ensembl:ENSGALT00000039821 ArrayExpress:E1BV40
Uniprot:E1BV40
Length = 3586
Score = 183 (69.5 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 44/158 (27%), Positives = 78/158 (49%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL---DKVTTYSSRSFAFVYFKRVEDA 69
D+ + L++GNL TT DL+ +F +FG + D +AF+ + +
Sbjct: 430 DEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGGIVDIDIKKVNGVPQYAFLQYCDIASV 489
Query: 70 KAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129
A + G N +K+ F + + P+ +W+ G+S V+ + L F ++G + F
Sbjct: 490 CKAIKKMDGEYLGNNRLKLGFGK-SMPTNCVWLDGLSTNVTDQYLTRHFCRYGPVVKVVF 548
Query: 130 LKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167
+ A V Y+ +E A A+K GR+IGG +++VDF
Sbjct: 549 DRLKGMALVLYNEIEYAQAAVKETKGRKIGGNKIKVDF 586
Score = 59 (25.8 bits), Expect = 4.4e-07, Sum P(4) = 4.4e-07
Identities = 40/183 (21%), Positives = 72/183 (39%)
Query: 632 LPQQAMVPPQTVDKQNIPPPHAEYGLTRPKEEHVLPVDYNRFSHDDSKVQSKMHFPHASE 691
L Q PP V + +P P A T+ + L + H S + KMH A+
Sbjct: 2865 LTQTVNTPPVLVVNKKLPDPAALKVETKTLQPSNLSPGVS--PHHPS-LSGKMH-SEANH 2920
Query: 692 PLIAHSSSMDYGSNNAAAISQAGVKLTPELIATLTSLIPAT--KSAEVAPGSSSARPLLA 749
S+ D ++ A Q +P S P T + +P SS+ P++
Sbjct: 2921 VSSGPSTPTDRAISHLAVTKQE--PHSPRTSGHSPSPFPRTCHPGSTSSPALSSSTPVML 2978
Query: 750 EPHVQSIEQLGNHYNPQAQSLTHHYASMSSTPSHSAQMLLGNNQLQESTASLSQQGMVYS 809
P + + + + + Q+ + H + + + H +Q +++ +T LS G+ Y
Sbjct: 2979 APGIPVPQYISSMHPEQSVIMPPHSVTQTVSLGHLSQ-----GEVRMNTPPLS--GISYG 3031
Query: 810 -RP 811
RP
Sbjct: 3032 IRP 3034
Score = 52 (23.4 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 40/189 (21%), Positives = 74/189 (39%)
Query: 208 PQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRS 267
P+SS G+ P S+ + P S Q+ L +++ ++ + +P+ + SF ++RS
Sbjct: 3163 PKSSEGKMAHSPHSEPRLLSVPSSSQLPGLPLTQPVVVPHGVQIM--HPTGS-SFHDYRS 3219
Query: 268 V-DEARRAKEGLQ-GRLFNDPRITIMFSSSELAPGKDYPGSYSGTKGPRSEMFFGDQIRP 325
V + R Q G I S + P + GT+ P + + + P
Sbjct: 3220 VYGDMRNYHTAAQLGHPQFPGASPIGLPSRSMTPSQQ--DIERGTRAPVLGVCWAEG-SP 3276
Query: 326 SQLDM-LGPNQSMQPNNFAGHLQPADIRGPSMPMRSIGAHGGHETLLSGPDFKDFHSMQD 384
L GP + + + QP + P + G SGP+ + H +
Sbjct: 3277 VDLGSEAGPGEGLPEGEHSHPSQPGRSKTPQISQDPKGPPA------SGPE-QSHHPTVN 3329
Query: 385 PNAKNLDPN 393
+A +DP+
Sbjct: 3330 RHAAQIDPH 3338
Score = 51 (23.0 bits), Expect = 7.1e-06, Sum P(5) = 7.1e-06
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 727 SLIPATKSAEVAPGSSSARPLLAEP-HVQSIEQLGNH 762
+L P TK++++ SS+ R +L EP +V + H
Sbjct: 2566 ALPPDTKASDIDTNSSTLRKILMEPKYVSATSITSTH 2602
Score = 49 (22.3 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 551 LDMLAKHYAEAIGFDIVFFLPDSED--DFASYTE-----FLRYLGSKNRAGVAKFDD-GT 602
L+ +A+ + ++ LP D D + TE F+ YL +K AG+ + G+
Sbjct: 3482 LEGVARRMMVESDYCLLLALPCGRDQEDVVNQTESLKAAFISYLQAKQAAGIINVPNPGS 3541
Query: 603 T-----LFLVPPSDFLSKVLKVVGPERLYGV 628
L + PP +F L + P+ L +
Sbjct: 3542 NQPAYVLQIFPPCEFSESHLSRLAPDLLASI 3572
Score = 47 (21.6 bits), Expect = 4.7e-08, Sum P(3) = 4.7e-08
Identities = 24/88 (27%), Positives = 35/88 (39%)
Query: 346 LQPADIR---GPSMPMRSIGAHGGHETLLSGP----DFKDFH---SMQDPNAKNLDPNWR 395
LQP+++ P P S H + SGP D H + Q+P++ +
Sbjct: 2894 LQPSNLSPGVSPHHPSLSGKMHSEANHVSSGPSTPTDRAISHLAVTKQEPHSPRTSGHSP 2953
Query: 396 RPSPS---PGIRTSPTQGIRQPLNHAPG 420
P P PG +SP P+ APG
Sbjct: 2954 SPFPRTCHPGSTSSPALSSSTPVMLAPG 2981
Score = 45 (20.9 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 21/71 (29%), Positives = 28/71 (39%)
Query: 669 DYNRFSHDDSKVQSKMHFPHASEPLIAHSSSMDYGSNNAAAISQAGVKLTPELIATLTSL 728
D R H + K + F S L SS D G+N+AA + Q V L LT +
Sbjct: 1549 DSKRLQHLERK-DDDLDF--ISGRLYGRQSSSD-GTNSAADLVQEPVVLFHSRFIELTRM 1604
Query: 729 IPATKSAEVAP 739
K + P
Sbjct: 1605 QQKEKEKDQKP 1615
Score = 43 (20.2 bits), Expect = 8.7e-07, Sum P(4) = 8.7e-07
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 325 PSQLDMLGPNQS--MQPNNFA-----GHLQPADIRGPSMPMRSIGAHGGHETLLSGP 374
P + + P QS M P++ GHL ++R + P+ I ++G L P
Sbjct: 2985 PQYISSMHPEQSVIMPPHSVTQTVSLGHLSQGEVRMNTPPLSGI-SYGIRPEALHSP 3040
Score = 43 (20.2 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 764 NPQAQSLTHHYASMSSTPSHSAQMLLGNNQLQESTASLSQQGMVYSRPLPNFS 816
+P++Q LTH ++S ++ Q G N+ + T++ S+ S N S
Sbjct: 2018 SPRSQKLTHSHSSAAT----GQQGKKGKNEPKADTSAESEDAAERSGQESNVS 2066
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 850 QGTEASTLYGSSVFQQPNNPTAVSNQ-VNLSQPQNVMTVSVDKVNLE 895
+G++AST YG+ ++P + Q N+S P + +V ++V LE
Sbjct: 2804 KGSQASTGYGTV---STHSPLVLGTQPYNMS-PV-ISSVKQERVALE 2845
Score = 39 (18.8 bits), Expect = 8.7e-07, Sum P(4) = 8.7e-07
Identities = 16/84 (19%), Positives = 29/84 (34%)
Query: 377 KDFHSMQDPNAKNLDPNWRRPSPSPGIRTSPTQGIRQPLNHAPGSWDVYDANQFQRDSKR 436
+D + P+ ++ R G +T P QP P S + A+ + +
Sbjct: 3122 RDVRMIMHPHMAAVESRQSRTPEGAG-KTPPVSKTPQPGKETPKSSEGKMAHSPHSEPRL 3180
Query: 437 LRVDGSMPIDDATFPSRKIDDHGL 460
L V S + + HG+
Sbjct: 3181 LSVPSSSQLPGLPLTQPVVVPHGV 3204
Score = 38 (18.4 bits), Expect = 4.4e-07, Sum P(4) = 4.4e-07
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 622 PERLYGVVLKLPQQAMVPPQTVDKQNIP 649
PE V ++ P+Q PP + +++P
Sbjct: 1698 PELAAPVKMEPPEQTEPPPVSEASKDVP 1725
Score = 38 (18.4 bits), Expect = 4.4e-07, Sum P(4) = 4.4e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 618 KVVGPERLYGVVLKLPQQAMVP---PQTVDKQNI 648
K GP+R+ + ++P + V Q+V K I
Sbjct: 2758 KTEGPQRISAKISQIPPASAVDIEFQQSVSKSQI 2791
Score = 38 (18.4 bits), Expect = 6.4e-06, Sum P(4) = 6.4e-06
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 629 VLKLPQQAMVPPQTVDKQNIPPPHAEYGLTRPKEEHVLP 667
V K PQ P++ + + PH+E L LP
Sbjct: 3152 VSKTPQPGKETPKSSEGKMAHSPHSEPRLLSVPSSSQLP 3190
Score = 37 (18.1 bits), Expect = 4.4e-07, Sum P(4) = 4.4e-07
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 430 FQRDSKRLRVDGSMPIDDATFPSRKIDDHGLVLDQSYGLGSITGGPASGA 479
F++DSKRL+ RK DD + + YG S + G S A
Sbjct: 1546 FEQDSKRLQ-----------HLERKDDDLDFISGRLYGRQSSSDGTNSAA 1584
Score = 37 (18.1 bits), Expect = 6.4e-06, Sum P(4) = 6.4e-06
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 716 KLTPELIATLTSLIP 730
+L P+L+A+++++ P
Sbjct: 3563 RLAPDLLASISNISP 3577
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 148 (57.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 44/174 (25%), Positives = 85/174 (48%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G P++I +++ P+ ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 128 KFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K + D N + FV + E A A+ +NG + ++ V +S+ R +
Sbjct: 129 KVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 123 (48.4 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 30/68 (44%), Positives = 40/68 (58%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYS---SRSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LKE+FGK+G AL KV T S+ F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRG 83
+ G D G
Sbjct: 251 MNGKDMNG 258
Score = 94 (38.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + FL FG I K + +G + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 355 GRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 146 (56.5 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 42/162 (25%), Positives = 81/162 (50%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVEDAKAAK 73
+++L+VG+L + TD+ L + FG+ G + V T S + +V F +DA A
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 74 DALQGSDFRGNPIKIEFAR--PA---KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFK 128
L G PI++ ++ P+ + ++++ + +++ + L + F FGNI K
Sbjct: 95 QELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK 154
Query: 129 FLKD--GNT---AFVEYSRLEDAAEALKNINGRQIGGEQLRV 165
D G + FV+Y+ E A +A++ +NG + +Q+ V
Sbjct: 155 VAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 110 (43.8 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDA 75
+N++V NL+ TTD DLK FG++G + S+ F FV F+ +DA A ++
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 76 LQGSDF 81
L G F
Sbjct: 275 LNGHKF 280
Score = 107 (42.7 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGN-----TAFVEYSRLEDAAEALK 151
S +L+V + ++S E+L+E F FG + K ++D N + FV ++ E+A EA+
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMS 376
Query: 152 NINGRQIGGEQLRVDFLRSQPSRR 175
++G+ I + L V + + RR
Sbjct: 377 QLSGKMIESKPLYVAIAQRKEDRR 400
Score = 70 (29.7 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 257 SRNYSFVEFRSVDEARRAKEGLQGRLFND 285
S+ + FV F + D+A RA E L G F+D
Sbjct: 254 SKGFGFVNFENADDAARAVESLNGHKFDD 282
Score = 39 (18.8 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 909 GAGQGTSDGEVDKNQRYQSTLQFAAN 934
G Q S+ E + RY+ L+ AA+
Sbjct: 288 GRAQKKSERETELRVRYEQNLKEAAD 313
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 128 (50.1 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LKELFGKFG AL KV T S + F FV F+R EDA+ A D
Sbjct: 23 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 82
Query: 76 LQGSDFRGNPIKI 88
+ G + G I +
Sbjct: 83 MNGKELNGKQIYV 95
Score = 88 (36.0 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K + +G + FV +S E+A +A+ +N
Sbjct: 127 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 186
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 187 GRIVATKPLYVALAQRKEERQAHLTNQYMQR 217
Score = 53 (23.7 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 234 MDEQMLHNAMILFGEIERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRL 282
+D++ L FG I K S+ + FV F S +EA +A + GR+
Sbjct: 137 IDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 189
Score = 39 (18.8 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 398 SPSPGIRTSPTQGIRQPLNHAPG 420
+P + T P ++QP H G
Sbjct: 352 NPQQHLNTQPQVAMQQPAVHVQG 374
Score = 37 (18.1 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 400 SPGIRTSP----TQGIRQPLNH 417
+P +RT P G+R P H
Sbjct: 335 TPAVRTVPQYKYAAGVRNPQQH 356
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 125 (49.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LK+LFGKFG AL KV T S + F FV F+R EDA+ A D
Sbjct: 146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 205
Query: 76 LQGSDFRGNPIKI 88
+ G + G I +
Sbjct: 206 MNGKELNGKQIYV 218
Score = 88 (36.0 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K + +G + FV +S E+A +A+ +N
Sbjct: 250 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 309
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 310 GRIVATKPLYVALAQRKEERQAHLTNQYMQR 340
Score = 46 (21.3 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 25/107 (23%), Positives = 41/107 (38%)
Query: 325 PSQLDMLGPN-----QSMQPN---NFAGHLQPADIRGPSMPMRSIGAHGGHETLLSGPDF 376
PSQ+ L P+ Q +P+ N G ++PA R P MR + P
Sbjct: 380 PSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQV--------PRV 431
Query: 377 KDFHSMQDPNAKNLDPN--WRRPSPSPGIRTSP----TQGIRQPLNH 417
+ + + + + P + +P +RT P G+R P H
Sbjct: 432 MSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQH 478
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 141 (54.7 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 35/105 (33%), Positives = 57/105 (54%)
Query: 10 RAYDDKEAPPSSNLWVG--NLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFV 61
R + A P N +G LS TT+ DL+E+F ++G L V T SR FAFV
Sbjct: 5 RRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFV 64
Query: 62 YFKRVEDAKAAKDALQGSDFRGNPIKIEFA---RPAKPSKHLWVG 103
YF+R++D+K A + G + G I+++++ R P+ +++G
Sbjct: 65 YFERIDDSKEAMEHANGMELDGRRIRVDYSITKRAHTPTPGIYMG 109
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 47/177 (26%), Positives = 77/177 (43%)
Query: 91 ARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLE 144
A P P+ L V G+S ++ +L E F ++G + + D T AFV + R++
Sbjct: 12 ANP-DPNTCLGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERID 70
Query: 145 DAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYK 204
D+ EA+++ NG ++ G ++RVD+ S R +H G +GR T F
Sbjct: 71 DSKEAMEHANGMELDGRRIRVDY--SITKR------AHTPTPGIYMGRPTHFLGGGMGCS 122
Query: 205 RSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYS 261
GR RD + GY + D + + + R +S SR+YS
Sbjct: 123 GGGGGGGAGRRRDSYYDRGYDRGYDRYEEYDYRYRRRSPSPYYSRYRSRSR-SRSYS 178
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 159 (61.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 58/205 (28%), Positives = 93/205 (45%)
Query: 6 SKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFA 59
SK N + + ++ +++G LS DT+ DL E +FG + T T SR F
Sbjct: 17 SKINASKNQQD---DGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 73
Query: 60 FVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK---PSKHLWVGGISQTVSKEEL 114
FV FK DA + L+ + + G I + A+ K P K ++VGG+S S+E++
Sbjct: 74 FVLFK---DAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQI 130
Query: 115 EEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168
+E F FG IE+ + D T F+ Y+ E + L++ QIG + +
Sbjct: 131 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEIKVA 189
Query: 169 RSQPSRREQWPNSHDARDGPIIGRG 193
+ + R+Q R GRG
Sbjct: 190 QPKEVYRQQQQQQKGGRGAAAGGRG 214
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 125 (49.1 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LK+LFGKFG AL KV T S + F FV F+R EDA+ A D
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 218
Query: 76 LQGSDFRGNPIKI 88
+ G + G I +
Sbjct: 219 MNGKELNGKQIYV 231
Score = 95 (38.5 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR 92
D + +G P++I +++
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ 88
Score = 88 (36.0 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K + +G + FV +S E+A +A+ +N
Sbjct: 263 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 322
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 323 GRIVATKPLYVALAQRKEERQAHLTNQYMQR 353
Score = 46 (21.3 bits), Expect = 2.0e-08, Sum P(3) = 2.0e-08
Identities = 25/107 (23%), Positives = 41/107 (38%)
Query: 325 PSQLDMLGPN-----QSMQPN---NFAGHLQPADIRGPSMPMRSIGAHGGHETLLSGPDF 376
PSQ+ L P+ Q +P+ N G ++PA R P MR + P
Sbjct: 393 PSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQV--------PRV 444
Query: 377 KDFHSMQDPNAKNLDPN--WRRPSPSPGIRTSP----TQGIRQPLNH 417
+ + + + + P + +P +RT P G+R P H
Sbjct: 445 MSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQH 491
>UNIPROTKB|Q9U1N0 [details] [associations]
symbol:HRP65 "Hrp65 protein" species:7153 "Chironomus
tentans" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006406 "mRNA export from nucleus" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005856
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
EMBL:AJ243013 EMBL:AJ404654 ProteinModelPortal:Q9U1N0
InterPro:IPR012975 Pfam:PF08075 Uniprot:Q9U1N0
Length = 535
Score = 164 (62.8 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 45/136 (33%), Positives = 71/136 (52%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD 80
+ L++GNL++D T+ +LKELF +G + + + ++FAF+ +A+ AK L G
Sbjct: 113 NRLYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDYRANAERAKKDLDGRM 172
Query: 81 FRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD--GNTA-- 136
+ PI+I FA A + V ++ VS E L + F FG +E + D G T
Sbjct: 173 RKNKPIRIRFAPNATTIR---VKNLTPFVSNELLFKSFEVFGQVERAVIIVDDRGKTTGE 229
Query: 137 -FVEYSRLEDAAEALK 151
VE++R A ALK
Sbjct: 230 GIVEFARKSGAMSALK 245
>TAIR|locus:2117706 [details] [associations]
symbol:ML3 "MEI2-like 3" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] [GO:0009507 "chloroplast" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 GO:GO:0045927 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL110123 GO:GO:0003723
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 EMBL:AL161548
EMBL:AK319074 IPI:IPI00542028 IPI:IPI01019349 PIR:T14812
RefSeq:NP_001119005.4 RefSeq:NP_193546.7 UniGene:At.32943
UniGene:At.70995 ProteinModelPortal:Q9SVV9 SMR:Q9SVV9 STRING:Q9SVV9
PaxDb:Q9SVV9 PRIDE:Q9SVV9 GeneID:827537 KEGG:ath:AT4G18120
TAIR:At4g18120 eggNOG:NOG286559 InParanoid:Q9SVV9
Genevestigator:Q9SVV9 Uniprot:Q9SVV9
Length = 759
Score = 167 (63.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 47/166 (28%), Positives = 88/166 (53%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKV-TTYSSRSFAFVYFKRVEDAKAAKDALQ 77
PS L+V N++++ D++L+ LF ++G + + T R F V + + ++AA ALQ
Sbjct: 164 PSRTLFVRNINSNVEDSELQALFEQYGHIRTLYTACKQRGFVMVSYNDIRASRAAMRALQ 223
Query: 78 GSDFRGNPIKIEFARPA-KPSKH------LWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
G + + I F+ P PS+ L V ++ +VS +LE F +G I++ +
Sbjct: 224 GKLLKKRKLDIHFSIPKDNPSEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIRET 283
Query: 131 KDG-NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRR 175
+ + FVE+ + A ALK +N +I G++++++ R +RR
Sbjct: 284 PNKRHHKFVEFFDVRSADAALKALNRTEIAGKRIKLEHSRPGGARR 329
Score = 96 (38.9 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 47/190 (24%), Positives = 81/190 (42%)
Query: 9 NRAYDDKEAPPSS---NLWVGNLSADTTDADLKELFGKFGALDKVTT-YSSRSFAFVYFK 64
N DD+E S +L + +L A D + +LFG G L+ T Y S + F
Sbjct: 73 NMLPDDEEELFSGLMDDLNLSSLPATLDDLEDYDLFGSGGGLELETDPYDSLNKGF---S 129
Query: 65 RVEDAKAAKDALQGSDFRGNPI-KIEFARP--AKPSKHLWVGGISQTVSKEELEEGFLKF 121
R+ A + D + + N + I P PS+ L+V I+ V EL+ F ++
Sbjct: 130 RMGFADSNVDNVMPQNIFQNGVGSIAGEHPYGEHPSRTLFVRNINSNVEDSELQALFEQY 189
Query: 122 GNIED-FKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPN 180
G+I + K V Y+ + + A++ + G+ + +L + F S P P+
Sbjct: 190 GHIRTLYTACKQRGFVMVSYNDIRASRAAMRALQGKLLKKRKLDIHF--SIPKDN---PS 244
Query: 181 SHDARDGPII 190
D G ++
Sbjct: 245 EKDVNQGTLV 254
Score = 86 (35.3 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 42/153 (27%), Positives = 65/153 (42%)
Query: 230 PSVQMDEQMLHNAMILFGEIERIKSYPS-RNYSFVEFRSVDEARRAKEGLQGRLFNDPRI 288
PSV + L N ++GEI+ I+ P+ R++ FVEF V A A + L RI
Sbjct: 260 PSVSNRD--LENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALNRTEIAGKRI 317
Query: 289 TIMFSSS---------ELAPGKDYPGSYS---GTKGPRSEMFFGDQIRPSQLDMLGPNQS 336
+ S ++ P + SYS + P + G+ R S +D P QS
Sbjct: 318 KLEHSRPGGARRNMMLQMNPELEQDDSYSYLNHVESPLASSPIGNW-RNSPIDH--PLQS 374
Query: 337 MQPNNFAGHLQPA-DIRGPSMPMRSIGAHGGHE 368
+ G+L P +IR P M++ + E
Sbjct: 375 FSKSPIFGNLSPTKNIRYPEFSMKTASVNNDQE 407
Score = 49 (22.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 837 AAPSNSQKGYGMMQGTEASTLYGSSVFQQPNNPTAVSNQVNLSQPQNVMTVS-VDKVNLE 895
A+ +N Q+G + + L+ SS + NN + ++ QPQ+ +VS +N
Sbjct: 400 ASVNNDQEG---RRFSHLDHLFSSSSY---NNASHKAS--TFQQPQSFGSVSSFGSLN-S 450
Query: 896 HPNHVQQL 903
HP+HV+ L
Sbjct: 451 HPSHVETL 458
Score = 43 (20.2 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 765 PQAQSLTHHYASMSSTPSHSAQMLLGNNQLQESTAS 800
PQ+ + S++S PSH + L G+ L S +S
Sbjct: 436 PQSFGSVSSFGSLNSHPSH-VETLSGSEFLWGSPSS 470
Score = 43 (20.2 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 324 RPSQLDMLGPNQSMQ-PNNFAGHLQPADIRGPSMPMRSIGAHGGHETLLSGPDF 376
R S LD L + S ++ A Q G S+ +H H LSG +F
Sbjct: 410 RFSHLDHLFSSSSYNNASHKASTFQQPQSFGSVSSFGSLNSHPSHVETLSGSEF 463
Score = 37 (18.1 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 585 RYLGSKNRAGVAKFDDGTTLFLVPPSDFLSK 615
+Y + A + + + GT FL P DF +K
Sbjct: 623 KYTRNMLLAAIDEKNSGTYDFLYLPIDFKNK 653
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 148 (57.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 45/174 (25%), Positives = 86/174 (49%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G PI+I +++ P+ ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 128 KFLKDGNT----AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K + D N AFV + + A A++ +NG + ++ V +S+ R +
Sbjct: 129 KVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 108 (43.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 28/76 (36%), Positives = 40/76 (52%)
Query: 16 EAPPSSNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTY---SSRSFAFVYFKRVEDAK 70
+A +N+++ N D D LKELF K+G L KV T S+ F FV F++ EDA
Sbjct: 186 KAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDAN 245
Query: 71 AAKDALQGSDFRGNPI 86
A + + G D G +
Sbjct: 246 KAVEEMNGKDINGKMV 261
Score = 108 (43.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 27/91 (29%), Positives = 48/91 (52%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFK-FLKDGNT---AFVEYSRLEDAAEALKNIN 154
+L++ + T+ E+L + F FG+I K L+DG + FV +S E+A +A+ +N
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR +G + L V + + R+ N + R
Sbjct: 355 GRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 161 (61.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 40/110 (36%), Positives = 60/110 (54%)
Query: 5 PSKFNRAYDDKEAPPSSNLWVG--NLSADTTDADLKELFGKFGALDKVT-TYS-----SR 56
P R + A P N +G LS TT+ DL+E+F K+G + V+ Y SR
Sbjct: 100 PMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 159
Query: 57 SFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA---RPAKPSKHLWVG 103
FAFVYF+ V+DAK AK+ G + G I+++F+ RP P+ +++G
Sbjct: 160 GFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209
Score = 38 (18.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 387 AKNLDPNWRRPSPSP 401
A++ D +RR SPSP
Sbjct: 253 AQDRDQIYRRRSPSP 267
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 161 (61.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 40/110 (36%), Positives = 60/110 (54%)
Query: 5 PSKFNRAYDDKEAPPSSNLWVG--NLSADTTDADLKELFGKFGALDKVT-TYS-----SR 56
P R + A P N +G LS TT+ DL+E+F K+G + V+ Y SR
Sbjct: 100 PMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 159
Query: 57 SFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA---RPAKPSKHLWVG 103
FAFVYF+ V+DAK AK+ G + G I+++F+ RP P+ +++G
Sbjct: 160 GFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209
Score = 38 (18.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 387 AKNLDPNWRRPSPSP 401
A++ D +RR SPSP
Sbjct: 253 AQDRDQIYRRRSPSP 267
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 161 (61.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 40/110 (36%), Positives = 60/110 (54%)
Query: 5 PSKFNRAYDDKEAPPSSNLWVG--NLSADTTDADLKELFGKFGALDKVT-TYS-----SR 56
P R + A P N +G LS TT+ DL+E+F K+G + V+ Y SR
Sbjct: 100 PMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 159
Query: 57 SFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA---RPAKPSKHLWVG 103
FAFVYF+ V+DAK AK+ G + G I+++F+ RP P+ +++G
Sbjct: 160 GFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209
Score = 38 (18.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 387 AKNLDPNWRRPSPSP 401
A++ D +RR SPSP
Sbjct: 253 AQDRDQIYRRRSPSP 267
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 161 (61.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 40/110 (36%), Positives = 60/110 (54%)
Query: 5 PSKFNRAYDDKEAPPSSNLWVG--NLSADTTDADLKELFGKFGALDKVT-TYS-----SR 56
P R + A P N +G LS TT+ DL+E+F K+G + V+ Y SR
Sbjct: 100 PMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 159
Query: 57 SFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA---RPAKPSKHLWVG 103
FAFVYF+ V+DAK AK+ G + G I+++F+ RP P+ +++G
Sbjct: 160 GFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209
Score = 38 (18.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 387 AKNLDPNWRRPSPSP 401
A++ D +RR SPSP
Sbjct: 253 AQDRDQIYRRRSPSP 267
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 161 (61.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 40/110 (36%), Positives = 60/110 (54%)
Query: 5 PSKFNRAYDDKEAPPSSNLWVG--NLSADTTDADLKELFGKFGALDKVT-TYS-----SR 56
P R + A P N +G LS TT+ DL+E+F K+G + V+ Y SR
Sbjct: 100 PMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 159
Query: 57 SFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA---RPAKPSKHLWVG 103
FAFVYF+ V+DAK AK+ G + G I+++F+ RP P+ +++G
Sbjct: 160 GFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMG 209
Score = 38 (18.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 387 AKNLDPNWRRPSPSP 401
A++ D +RR SPSP
Sbjct: 253 AQDRDQIYRRRSPSP 267
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 160 (61.4 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 47/175 (26%), Positives = 91/175 (52%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKA 71
P+++L+VG+L D T+A L E F G + D +T+ SS ++A+V F+ +DA+
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-NYAYVNFQHTKDAEH 67
Query: 72 AKDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIED 126
A D + +G P++I +++ P+ +++V + ++++ + L + FGNI
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127
Query: 127 FKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
+ D N + FV + E A A+K +NG + G ++ V +S+ R +
Sbjct: 128 CNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Score = 126 (49.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 34/79 (43%), Positives = 44/79 (55%)
Query: 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDA 69
KE P N+++ N D D LK+LFGKFG AL KV T S + F FV F+R EDA
Sbjct: 188 KEFP---NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 70 KAAKDALQGSDFRGNPIKI 88
+ A D + G + G I +
Sbjct: 245 QKAVDEMNGKELNGKQIYV 263
Score = 55 (24.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDA 146
+L+V + + E L + F FG I K + +G + FV +S E+A
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEA 346
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 158 (60.7 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 52/188 (27%), Positives = 91/188 (48%)
Query: 20 SSNLWVGNLSADTTDADLKELFGK--FGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQ 77
S L + NLS T+ L+E+F K F + + S+ +AF+ F EDAK A ++
Sbjct: 110 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 169
Query: 78 GSDFRGNPIKIEFARP-------AKPSKHLWVGGISQTVSKEELEEGF---LKFGNIEDF 127
+ G I++E P ++PSK L+V G+S+ ++E L+E F ++ + D
Sbjct: 170 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDR 229
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDG 187
+ FV+++ EDA A + + +I G ++ +D+ ++P + R G
Sbjct: 230 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW--AKPKGEGGFGGRGGGRGG 287
Query: 188 PIIGRGTG 195
GRG G
Sbjct: 288 -FGGRGGG 294
Score = 144 (55.7 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 36/88 (40%), Positives = 51/88 (57%)
Query: 10 RAYDDKEAPPSSNLWVGNLSADTTDADLKELF-GKFGA---LDKVTTYSSRSFAFVYFKR 65
R + + PS L+V LS DTT+ LKE F G A D+ T SS+ F FV F
Sbjct: 186 RGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETG-SSKGFGFVDFNS 244
Query: 66 VEDAKAAKDALQGSDFRGNPIKIEFARP 93
EDAKAAK+A++ + GN + +++A+P
Sbjct: 245 EEDAKAAKEAMEDGEIDGNKVTLDWAKP 272
>UNIPROTKB|F1MI47 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030374 "ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0016575 "histone deacetylation" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003676 GO:GO:0005667 GO:GO:0030374
GO:GO:0016575 GeneTree:ENSGT00390000020883 IPI:IPI00690613
UniGene:Bt.91172 OMA:SLTSYGA EMBL:DAAA02063594
Ensembl:ENSBTAT00000001619 Uniprot:F1MI47
Length = 669
Score = 175 (66.7 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 45/148 (30%), Positives = 81/148 (54%)
Query: 23 LWVGNLS-ADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDF 81
++VGN+ ADTT +L LF +G + ++ + FAFV+ + A A +AL G +
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTV--MSCAVMKQFAFVHMRENAGAVRAIEALHGHEL 60
Query: 82 R-GNPIKIEFARPAKPSK--HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
R G + +E +RP +P ++VG +S + +EL F + G + + +KD AFV
Sbjct: 61 RPGRALVVEMSRP-RPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAFV 117
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVD 166
+ DA A+ +NG+++ G+++ V+
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVE 145
Score = 41 (19.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 570 LPDSEDDFA----SYTEFLR 585
LPD+ D+A SY ++LR
Sbjct: 638 LPDAHSDYARYSGSYNDYLR 657
Score = 41 (19.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 205 RSHPQSSVGRNRDGPPSKILWVGY 228
R+ P S+G PS L VGY
Sbjct: 238 RAQPSVSLGAAYRAQPSASLGVGY 261
>UNIPROTKB|Q5EA36 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 EMBL:BT020733 IPI:IPI00690613
RefSeq:NP_001014901.1 UniGene:Bt.91172 ProteinModelPortal:Q5EA36
SMR:Q5EA36 STRING:Q5EA36 PRIDE:Q5EA36 GeneID:511512 KEGG:bta:511512
CTD:10432 HOGENOM:HOG000065673 HOVERGEN:HBG053180 InParanoid:Q5EA36
KO:K13189 OrthoDB:EOG45X7XS NextBio:20869968 Uniprot:Q5EA36
Length = 669
Score = 175 (66.7 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 45/148 (30%), Positives = 81/148 (54%)
Query: 23 LWVGNLS-ADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDF 81
++VGN+ ADTT +L LF +G + ++ + FAFV+ + A A +AL G +
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTV--MSCAVMKQFAFVHMRENAGAVRAIEALHGHEL 60
Query: 82 R-GNPIKIEFARPAKPSK--HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
R G + +E +RP +P ++VG +S + +EL F + G + + +KD AFV
Sbjct: 61 RPGRALVVEMSRP-RPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAFV 117
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVD 166
+ DA A+ +NG+++ G+++ V+
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVE 145
Score = 41 (19.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 570 LPDSEDDFA----SYTEFLR 585
LPD+ D+A SY ++LR
Sbjct: 638 LPDAHSDYARYSGSYNDYLR 657
Score = 41 (19.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 205 RSHPQSSVGRNRDGPPSKILWVGY 228
R+ P S+G PS L VGY
Sbjct: 238 RAQPSVSLGAAYRAQPSASLGVGY 261
>UNIPROTKB|E2RS43 [details] [associations]
symbol:RBM14 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0016575 "histone deacetylation"
evidence=IEA] [GO:0005667 "transcription factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003676
GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
GeneTree:ENSGT00390000020883 CTD:10432 KO:K13189 OMA:SLTSYGA
EMBL:AAEX03011624 EMBL:AAEX03011625 RefSeq:XP_852283.2
ProteinModelPortal:E2RS43 Ensembl:ENSCAFT00000019697 GeneID:610639
KEGG:cfa:610639 NextBio:20896193 Uniprot:E2RS43
Length = 669
Score = 175 (66.7 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 45/148 (30%), Positives = 81/148 (54%)
Query: 23 LWVGNLS-ADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDF 81
++VGN+ ADTT +L LF +G + ++ + FAFV+ + A A +AL G +
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTV--MSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 82 R-GNPIKIEFARPAKPSK--HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
R G + +E +RP +P ++VG +S + +EL F + G + + +KD AFV
Sbjct: 61 RPGRALVVEMSRP-RPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAFV 117
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVD 166
+ DA A+ +NG+++ G+++ V+
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVE 145
Score = 41 (19.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 570 LPDSEDDFA----SYTEFLR 585
LPD+ D+A SY ++LR
Sbjct: 638 LPDAHSDYARYSGSYNDYLR 657
Score = 41 (19.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 205 RSHPQSSVGRNRDGPPSKILWVGY 228
R+ P S+G PS L VGY
Sbjct: 238 RAQPSVSLGAAYRAQPSASLGVGY 261
>UNIPROTKB|Q96PK6 [details] [associations]
symbol:RBM14 "RNA-binding protein 14" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IPI] [GO:0016592 "mediator complex"
evidence=NAS] [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=NAS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0016575 "histone deacetylation" evidence=IPI] [GO:0009725
"response to hormone stimulus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0030520
"intracellular estrogen receptor signaling pathway" evidence=NAS]
[GO:0042921 "glucocorticoid receptor signaling pathway"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0006310
"DNA recombination" evidence=NAS] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0006260 "DNA replication" evidence=NAS]
[GO:0030674 "protein binding, bridging" evidence=NAS] [GO:0005667
"transcription factor complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0042921 GO:GO:0000166 GO:GO:0006260 GO:GO:0006281
EMBL:CH471076 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0030674
GO:GO:0003723 GO:GO:0005667 GO:GO:0006310 GO:GO:0009725
GO:GO:0030529 GO:GO:0030520 GO:GO:0030374 GO:GO:0016575
eggNOG:COG0724 EMBL:AP001157 GO:GO:0016592 GO:GO:0001104 CTD:10432
HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
EMBL:AF315632 EMBL:AF315633 EMBL:AF080561 EMBL:AK021768
EMBL:AK222830 EMBL:BC000488 EMBL:BE885635 EMBL:CR749306
IPI:IPI00013174 IPI:IPI00644837 IPI:IPI01009009
RefSeq:NP_001185765.1 RefSeq:NP_001185775.1 RefSeq:NP_006319.1
UniGene:Hs.533712 PDB:2DNP PDBsum:2DNP ProteinModelPortal:Q96PK6
SMR:Q96PK6 IntAct:Q96PK6 MINT:MINT-2798129 STRING:Q96PK6
PhosphoSite:Q96PK6 DMDM:73913750 PaxDb:Q96PK6 PRIDE:Q96PK6
DNASU:10432 Ensembl:ENST00000310137 Ensembl:ENST00000393979
Ensembl:ENST00000500635 GeneID:100526737 GeneID:10432
KEGG:hsa:10432 UCSC:uc001oit.3 UCSC:uc009yri.3 CTD:100526737
GeneCards:GC11P066384 HGNC:HGNC:14219 HPA:HPA006628 MIM:612409
neXtProt:NX_Q96PK6 PharmGKB:PA34263 InParanoid:Q96PK6 OMA:SLTSYGA
PhylomeDB:Q96PK6 ChiTaRS:RBM14 ChiTaRS:RBM14-RBM4
EvolutionaryTrace:Q96PK6 GenomeRNAi:10432 NextBio:39542
ArrayExpress:Q96PK6 Bgee:Q96PK6 Genevestigator:Q96PK6
GermOnline:ENSG00000173959 Uniprot:Q96PK6
Length = 669
Score = 175 (66.7 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 45/148 (30%), Positives = 81/148 (54%)
Query: 23 LWVGNLS-ADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDF 81
++VGN+ ADTT +L LF +G + ++ + FAFV+ + A A +AL G +
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTV--MSCAVMKQFAFVHMRENAGALRAIEALHGHEL 60
Query: 82 R-GNPIKIEFARPAKPSK--HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
R G + +E +RP +P ++VG +S + +EL F + G + + +KD AFV
Sbjct: 61 RPGRALVVEMSRP-RPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAFV 117
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVD 166
+ DA A+ +NG+++ G+++ V+
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVE 145
Score = 41 (19.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 570 LPDSEDDFA----SYTEFLR 585
LPD+ D+A SY ++LR
Sbjct: 638 LPDAHSDYARYSGSYNDYLR 657
Score = 41 (19.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 205 RSHPQSSVGRNRDGPPSKILWVGY 228
R+ P S+G PS L VGY
Sbjct: 238 RAQPSVSLGAAYRAQPSASLGVGY 261
>MGI|MGI:1929092 [details] [associations]
symbol:Rbm14 "RNA binding motif protein 14" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016575 "histone deacetylation" evidence=ISO]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1929092 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006351
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0016575
eggNOG:COG0724 GeneTree:ENSGT00390000020883 CTD:10432
HOGENOM:HOG000065673 HOVERGEN:HBG053180 KO:K13189 OrthoDB:EOG45X7XS
OMA:SLTSYGA ChiTaRS:RBM14 EMBL:AK004928 EMBL:AK088201 EMBL:AK167503
EMBL:BC010294 IPI:IPI00404707 IPI:IPI00649362 RefSeq:NP_063922.2
UniGene:Mm.276338 UniGene:Mm.441002 ProteinModelPortal:Q8C2Q3
SMR:Q8C2Q3 DIP:DIP-58946N IntAct:Q8C2Q3 STRING:Q8C2Q3
PhosphoSite:Q8C2Q3 PaxDb:Q8C2Q3 PRIDE:Q8C2Q3
Ensembl:ENSMUST00000006625 GeneID:56275 KEGG:mmu:56275
UCSC:uc008gay.1 UCSC:uc008gaz.1 InParanoid:Q8C2Q3 NextBio:312164
Bgee:Q8C2Q3 CleanEx:MM_RBM14 Genevestigator:Q8C2Q3
GermOnline:ENSMUSG00000006456 Uniprot:Q8C2Q3
Length = 669
Score = 175 (66.7 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 45/148 (30%), Positives = 81/148 (54%)
Query: 23 LWVGNLS-ADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDF 81
++VGN+ ADTT +L LF +G + ++ + FAFV+ + A A +AL G +
Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTV--MSCAVMKQFAFVHMRENAGAVRAIEALHGHEL 60
Query: 82 R-GNPIKIEFARPAKPSK--HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
R G + +E +RP +P ++VG +S + +EL F + G + + +KD AFV
Sbjct: 61 RPGRALVVEMSRP-RPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAFV 117
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVD 166
+ DA A+ +NG+++ G+++ V+
Sbjct: 118 HMEKEADAKAAIAQLNGKEVKGKRINVE 145
Score = 41 (19.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 570 LPDSEDDFA----SYTEFLR 585
LPD+ D+A SY ++LR
Sbjct: 638 LPDAHSDYARYSGSYNDYLR 657
Score = 41 (19.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 205 RSHPQSSVGRNRDGPPSKILWVGY 228
R+ P S+G PS L VGY
Sbjct: 238 RAQPSVSLGAAYRAQPSASLGVGY 261
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 140 (54.3 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 36/113 (31%), Positives = 59/113 (52%)
Query: 23 LWVGNLSADTTDADLKELFGKFG---ALDKVTTYSSRS-FAFVYFKRVEDAKAAKDALQG 78
L+VGNLS D T+ + +LF + G + +T ++S + FV F DA AA A+ G
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG 70
Query: 79 SDFRGNPIKIEFAR-PAKPSK------HLWVGGISQTVSKEELEEGFLKFGNI 124
G +K+ +A P+ K H++VG +S ++ E+++ F FG I
Sbjct: 71 RKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI 123
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 155 (59.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 49/168 (29%), Positives = 80/168 (47%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRS------FAFVYFKRVEDAKAAKD 74
+NL + L D T+++L LF KFG + K R + FV + A AA +
Sbjct: 41 TNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVN 100
Query: 75 ALQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL- 130
+ G + RG +K+ FARP++ S L+VG + + ++++ E F +GNI D L
Sbjct: 101 GMDGYETRGKRLKVAFARPSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLR 160
Query: 131 -KDGN----TAFVEYSRLEDAAEALKNINGRQIGGEQ--LRVDFLRSQ 171
K N AF+++ + DA A ++ I G L V F+ +
Sbjct: 161 HKFNNRSRGVAFLQFELVRDAEVAKYGMDRYMIEGASRPLTVKFVERE 208
>UNIPROTKB|E1C4T6 [details] [associations]
symbol:Gga.17720 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001085 "RNA polymerase II transcription factor binding"
evidence=IEA] [GO:0001191 "RNA polymerase II transcription factor
binding transcription factor activity involved in negative
regulation of transcription" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0017053 "transcriptional repressor complex"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0050769 "positive regulation of
neurogenesis" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0017053
GO:GO:0003714 GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003700 GO:GO:0003697 GO:GO:0001191 InterPro:IPR012921
Pfam:PF07744 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 OMA:KHLKPEQ InterPro:IPR010912
GeneTree:ENSGT00530000063730 EMBL:AADN02040740 EMBL:AADN02040741
EMBL:AADN02040742 EMBL:AADN02040743 EMBL:AADN02040744
EMBL:AADN02040745 IPI:IPI00580713 ProteinModelPortal:E1C4T6
Ensembl:ENSGALT00000005804 ArrayExpress:E1C4T6 Uniprot:E1C4T6
Length = 3607
Score = 183 (69.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 44/158 (27%), Positives = 78/158 (49%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL---DKVTTYSSRSFAFVYFKRVEDA 69
D+ + L++GNL TT DL+ +F +FG + D +AF+ + +
Sbjct: 429 DEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGGIVDIDIKKVNGVPQYAFLQYCDIASV 488
Query: 70 KAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129
A + G N +K+ F + + P+ +W+ G+S V+ + L F ++G + F
Sbjct: 489 CKAIKKMDGEYLGNNRLKLGFGK-SMPTNCVWLDGLSTNVTDQYLTRHFCRYGPVVKVVF 547
Query: 130 LKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167
+ A V Y+ +E A A+K GR+IGG +++VDF
Sbjct: 548 DRLKGMALVLYNEIEYAQAAVKETKGRKIGGNKIKVDF 585
Score = 59 (25.8 bits), Expect = 4.5e-07, Sum P(4) = 4.5e-07
Identities = 40/183 (21%), Positives = 72/183 (39%)
Query: 632 LPQQAMVPPQTVDKQNIPPPHAEYGLTRPKEEHVLPVDYNRFSHDDSKVQSKMHFPHASE 691
L Q PP V + +P P A T+ + L + H S + KMH A+
Sbjct: 2886 LTQTVNTPPVLVVNKKLPDPAALKVETKTLQPSNLSPGVS--PHHPS-LSGKMH-SEANH 2941
Query: 692 PLIAHSSSMDYGSNNAAAISQAGVKLTPELIATLTSLIPAT--KSAEVAPGSSSARPLLA 749
S+ D ++ A Q +P S P T + +P SS+ P++
Sbjct: 2942 VSSGPSTPTDRAISHLAVTKQE--PHSPRTSGHSPSPFPRTCHPGSTSSPALSSSTPVML 2999
Query: 750 EPHVQSIEQLGNHYNPQAQSLTHHYASMSSTPSHSAQMLLGNNQLQESTASLSQQGMVYS 809
P + + + + + Q+ + H + + + H +Q +++ +T LS G+ Y
Sbjct: 3000 APGIPVPQYISSMHPEQSVIMPPHSVTQTVSLGHLSQ-----GEVRMNTPPLS--GISYG 3052
Query: 810 -RP 811
RP
Sbjct: 3053 IRP 3055
Score = 51 (23.0 bits), Expect = 7.3e-06, Sum P(5) = 7.3e-06
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 727 SLIPATKSAEVAPGSSSARPLLAEP-HVQSIEQLGNH 762
+L P TK++++ SS+ R +L EP +V + H
Sbjct: 2587 ALPPDTKASDIDTNSSTLRKILMEPKYVSATSITSTH 2623
Score = 50 (22.7 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 41/189 (21%), Positives = 72/189 (38%)
Query: 208 PQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRS 267
P+SS G+ P S+ + P S Q+ L +++ ++ + +P+ + SF ++RS
Sbjct: 3184 PKSSEGKMAHSPHSEPRLLSVPSSSQLPGLPLTQPVVVPHGVQIM--HPTGS-SFHDYRS 3240
Query: 268 V-DEARRAKEGLQGRLFNDPRITIMFSSSELA-PGKDY-PGSYSGTKGPRSEMFFGDQIR 324
V + R Q P+ +S + P + P GP + R
Sbjct: 3241 VYGDMRNYHTAAQ---LGHPQFP---GASPIGLPSRSMTPSQVRSEAGPGEVVAAAAARR 3294
Query: 325 PSQLDMLGPNQSMQPNNFAGHLQPADIRGPSMPMRSIGAHGGHETLLSGPDFKDFHSMQD 384
QL + P + Q H P+ P S G SGP+ + H +
Sbjct: 3295 HIQLFLFPPLPASQGLPEGEHSHPSQPGRSKTPQISQDPKGPPA---SGPE-QSHHPTVN 3350
Query: 385 PNAKNLDPN 393
+A +DP+
Sbjct: 3351 RHAAQIDPH 3359
Score = 49 (22.3 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 551 LDMLAKHYAEAIGFDIVFFLPDSED--DFASYTE-----FLRYLGSKNRAGVAKFDD-GT 602
L+ +A+ + ++ LP D D + TE F+ YL +K AG+ + G+
Sbjct: 3503 LEGVARRMMVESDYCLLLALPCGRDQEDVVNQTESLKAAFISYLQAKQAAGIINVPNPGS 3562
Query: 603 T-----LFLVPPSDFLSKVLKVVGPERLYGV 628
L + PP +F L + P+ L +
Sbjct: 3563 NQPAYVLQIFPPCEFSESHLSRLAPDLLASI 3593
Score = 47 (21.6 bits), Expect = 4.8e-08, Sum P(3) = 4.8e-08
Identities = 24/88 (27%), Positives = 35/88 (39%)
Query: 346 LQPADIR---GPSMPMRSIGAHGGHETLLSGP----DFKDFH---SMQDPNAKNLDPNWR 395
LQP+++ P P S H + SGP D H + Q+P++ +
Sbjct: 2915 LQPSNLSPGVSPHHPSLSGKMHSEANHVSSGPSTPTDRAISHLAVTKQEPHSPRTSGHSP 2974
Query: 396 RPSPS---PGIRTSPTQGIRQPLNHAPG 420
P P PG +SP P+ APG
Sbjct: 2975 SPFPRTCHPGSTSSPALSSSTPVMLAPG 3002
Score = 45 (20.9 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 21/71 (29%), Positives = 28/71 (39%)
Query: 669 DYNRFSHDDSKVQSKMHFPHASEPLIAHSSSMDYGSNNAAAISQAGVKLTPELIATLTSL 728
D R H + K + F S L SS D G+N+AA + Q V L LT +
Sbjct: 1570 DSKRLQHLERK-DDDLDF--ISGRLYGRQSSSD-GTNSAADLVQEPVVLFHSRFIELTRM 1625
Query: 729 IPATKSAEVAP 739
K + P
Sbjct: 1626 QQKEKEKDQKP 1636
Score = 43 (20.2 bits), Expect = 8.9e-07, Sum P(4) = 8.9e-07
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 325 PSQLDMLGPNQS--MQPNNFA-----GHLQPADIRGPSMPMRSIGAHGGHETLLSGP 374
P + + P QS M P++ GHL ++R + P+ I ++G L P
Sbjct: 3006 PQYISSMHPEQSVIMPPHSVTQTVSLGHLSQGEVRMNTPPLSGI-SYGIRPEALHSP 3061
Score = 43 (20.2 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 764 NPQAQSLTHHYASMSSTPSHSAQMLLGNNQLQESTASLSQQGMVYSRPLPNFS 816
+P++Q LTH ++S ++ Q G N+ + T++ S+ S N S
Sbjct: 2039 SPRSQKLTHSHSSAAT----GQQGKKGKNEPKADTSAESEDAAERSGQESNVS 2087
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 850 QGTEASTLYGSSVFQQPNNPTAVSNQ-VNLSQPQNVMTVSVDKVNLE 895
+G++AST YG+ ++P + Q N+S P + +V ++V LE
Sbjct: 2825 KGSQASTGYGTV---STHSPLVLGTQPYNMS-PV-ISSVKQERVALE 2866
Score = 39 (18.8 bits), Expect = 8.9e-07, Sum P(4) = 8.9e-07
Identities = 16/84 (19%), Positives = 29/84 (34%)
Query: 377 KDFHSMQDPNAKNLDPNWRRPSPSPGIRTSPTQGIRQPLNHAPGSWDVYDANQFQRDSKR 436
+D + P+ ++ R G +T P QP P S + A+ + +
Sbjct: 3143 RDVRMIMHPHMAAVESRQSRTPEGAG-KTPPVSKTPQPGKETPKSSEGKMAHSPHSEPRL 3201
Query: 437 LRVDGSMPIDDATFPSRKIDDHGL 460
L V S + + HG+
Sbjct: 3202 LSVPSSSQLPGLPLTQPVVVPHGV 3225
Score = 38 (18.4 bits), Expect = 4.5e-07, Sum P(4) = 4.5e-07
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 622 PERLYGVVLKLPQQAMVPPQTVDKQNIP 649
PE V ++ P+Q PP + +++P
Sbjct: 1719 PELAAPVKMEPPEQTEPPPVSEASKDVP 1746
Score = 38 (18.4 bits), Expect = 4.5e-07, Sum P(4) = 4.5e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 618 KVVGPERLYGVVLKLPQQAMVP---PQTVDKQNI 648
K GP+R+ + ++P + V Q+V K I
Sbjct: 2779 KTEGPQRISAKISQIPPASAVDIEFQQSVSKSQI 2812
Score = 38 (18.4 bits), Expect = 6.6e-06, Sum P(4) = 6.6e-06
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 629 VLKLPQQAMVPPQTVDKQNIPPPHAEYGLTRPKEEHVLP 667
V K PQ P++ + + PH+E L LP
Sbjct: 3173 VSKTPQPGKETPKSSEGKMAHSPHSEPRLLSVPSSSQLP 3211
Score = 37 (18.1 bits), Expect = 4.5e-07, Sum P(4) = 4.5e-07
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 430 FQRDSKRLRVDGSMPIDDATFPSRKIDDHGLVLDQSYGLGSITGGPASGA 479
F++DSKRL+ RK DD + + YG S + G S A
Sbjct: 1567 FEQDSKRLQ-----------HLERKDDDLDFISGRLYGRQSSSDGTNSAA 1605
Score = 37 (18.1 bits), Expect = 6.6e-06, Sum P(4) = 6.6e-06
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 716 KLTPELIATLTSLIP 730
+L P+L+A+++++ P
Sbjct: 3584 RLAPDLLASISNISP 3598
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 150 (57.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 44/174 (25%), Positives = 86/174 (49%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G P++I +++ P+ ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 128 KFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K + D N + FV + E A A++ +NG + ++ V +S+ R +
Sbjct: 129 KVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 125 (49.1 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LK+LFGKFG AL KV T S + F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRGNPIKI 88
+ G + G I +
Sbjct: 251 MNGKELNGKQIYV 263
Score = 88 (36.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K + +G + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 355 GRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Score = 46 (21.3 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 25/107 (23%), Positives = 41/107 (38%)
Query: 325 PSQLDMLGPN-----QSMQPN---NFAGHLQPADIRGPSMPMRSIGAHGGHETLLSGPDF 376
PSQ+ L P+ Q +P+ N G ++PA R P MR + P
Sbjct: 425 PSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQV--------PRV 476
Query: 377 KDFHSMQDPNAKNLDPN--WRRPSPSPGIRTSP----TQGIRQPLNH 417
+ + + + + P + +P +RT P G+R P H
Sbjct: 477 MSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQH 523
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 150 (57.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 44/174 (25%), Positives = 86/174 (49%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G P++I +++ P+ ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 128 KFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K + D N + FV + E A A++ +NG + ++ V +S+ R +
Sbjct: 129 KVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 125 (49.1 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LK+LFGKFG AL KV T S + F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRGNPIKI 88
+ G + G I +
Sbjct: 251 MNGKELNGKQIYV 263
Score = 88 (36.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K + +G + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 355 GRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Score = 46 (21.3 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 25/107 (23%), Positives = 41/107 (38%)
Query: 325 PSQLDMLGPN-----QSMQPN---NFAGHLQPADIRGPSMPMRSIGAHGGHETLLSGPDF 376
PSQ+ L P+ Q +P+ N G ++PA R P MR + P
Sbjct: 425 PSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQV--------PRV 476
Query: 377 KDFHSMQDPNAKNLDPN--WRRPSPSPGIRTSP----TQGIRQPLNH 417
+ + + + + P + +P +RT P G+R P H
Sbjct: 477 MSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQH 523
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 150 (57.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 44/174 (25%), Positives = 86/174 (49%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G P++I +++ P+ ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 128 KFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K + D N + FV + E A A++ +NG + ++ V +S+ R +
Sbjct: 129 KVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 125 (49.1 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LK+LFGKFG AL KV T S + F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRGNPIKI 88
+ G + G I +
Sbjct: 251 MNGKELNGKQIYV 263
Score = 88 (36.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K + +G + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 355 GRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Score = 46 (21.3 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 25/107 (23%), Positives = 41/107 (38%)
Query: 325 PSQLDMLGPN-----QSMQPN---NFAGHLQPADIRGPSMPMRSIGAHGGHETLLSGPDF 376
PSQ+ L P+ Q +P+ N G ++PA R P MR + P
Sbjct: 425 PSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQV--------PRV 476
Query: 377 KDFHSMQDPNAKNLDPN--WRRPSPSPGIRTSP----TQGIRQPLNH 417
+ + + + + P + +P +RT P G+R P H
Sbjct: 477 MSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQH 523
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 150 (57.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 44/174 (25%), Positives = 86/174 (49%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G P++I +++ P+ ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 128 KFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K + D N + FV + E A A++ +NG + ++ V +S+ R +
Sbjct: 129 KVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 125 (49.1 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LK+LFGKFG AL KV T S + F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRGNPIKI 88
+ G + G I +
Sbjct: 251 MNGKELNGKQIYV 263
Score = 88 (36.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K + +G + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 355 GRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Score = 46 (21.3 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 25/107 (23%), Positives = 41/107 (38%)
Query: 325 PSQLDMLGPN-----QSMQPN---NFAGHLQPADIRGPSMPMRSIGAHGGHETLLSGPDF 376
PSQ+ L P+ Q +P+ N G ++PA R P MR + P
Sbjct: 425 PSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQV--------PRV 476
Query: 377 KDFHSMQDPNAKNLDPN--WRRPSPSPGIRTSP----TQGIRQPLNH 417
+ + + + + P + +P +RT P G+R P H
Sbjct: 477 MSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQH 523
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 150 (57.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 44/174 (25%), Positives = 86/174 (49%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G P++I +++ P+ ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 128 KFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K + D N + FV + E A A++ +NG + ++ V +S+ R +
Sbjct: 129 KVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 125 (49.1 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LK+LFGKFG AL KV T S + F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRGNPIKI 88
+ G + G I +
Sbjct: 251 MNGKELNGKQIYV 263
Score = 88 (36.0 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K + +G + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 355 GRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Score = 46 (21.3 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 25/107 (23%), Positives = 41/107 (38%)
Query: 325 PSQLDMLGPN-----QSMQPN---NFAGHLQPADIRGPSMPMRSIGAHGGHETLLSGPDF 376
PSQ+ L P+ Q +P+ N G ++PA R P MR + P
Sbjct: 425 PSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQV--------PRV 476
Query: 377 KDFHSMQDPNAKNLDPN--WRRPSPSPGIRTSP----TQGIRQPLNH 417
+ + + + + P + +P +RT P G+R P H
Sbjct: 477 MSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQH 523
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 157 (60.3 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 62/226 (27%), Positives = 96/226 (42%)
Query: 2 APPPSKFNRAYDD-----KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT----- 51
APP N A D K + ++VG LS DT+ DLK+ F KFG + T
Sbjct: 46 APPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP 105
Query: 52 -TYSSRSFAFVYFKRVEDAKAAKDALQGSDFR--GNPI--KIEFARPAKPSKHLWVGGIS 106
T SR F F+ FK DA + + L + R G I K A P K ++VGG++
Sbjct: 106 NTGRSRGFGFILFK---DAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLN 162
Query: 107 QTVSKEELEEGFLKFGNIE------DFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG 160
++E++ E F +FG IE D K K F+ + E + L+ + G
Sbjct: 163 PEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSG 221
Query: 161 EQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRS 206
+ + + + ++Q S + RG+G + Y +S
Sbjct: 222 SKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQGSTNYGKS 267
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 145 (56.1 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 44/171 (25%), Positives = 83/171 (48%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGAL------DKVTTYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + V T S +A++ F++ DA+ A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G PI+I +++ P ++++ + ++ + L + F FGNI
Sbjct: 69 LDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 128 KFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174
K + D + + FV + E A +A+ +NG + ++ V +S+ R
Sbjct: 129 KVVCDDHGSRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRRER 179
Score = 93 (37.8 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 36/135 (26%), Positives = 61/135 (45%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + ++ E+L + F +G I K + +G + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR-------DGPIIGRGTGFSDNHSAYKRSH 207
GR +G + L V + + R+ N + R GP++G F S + S
Sbjct: 355 GRILGTKPLYVALAQRKEERKAILTNQYMQRLSTVRALGGPLLG---SFHQPTSYFLPSV 411
Query: 208 PQSSVGRNRDGPPSK 222
PQ D PP K
Sbjct: 412 PQKL-----DRPPFK 421
Score = 90 (36.7 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDA 75
+N++V NL D + L++LF +FG + V SR F FV F++ E+A+ A
Sbjct: 191 TNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMD 250
Query: 76 LQGSDFRG 83
+ G + G
Sbjct: 251 MNGKEVSG 258
Score = 67 (28.6 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 232 VQMDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEFRSVDEARRAKEGLQGR 281
V +DEQ L + FG++ +K S SR + FV F+ +EA++A + G+
Sbjct: 200 VDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGK 254
Score = 46 (21.3 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 303 YPGSYSGTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPNNFAG-HLQ 347
YPG+ G P+S G P+ L L P +P AG H+Q
Sbjct: 514 YPGATPGAPHPKSGSLSGPN-SPAYL--LQPTLVPRPQEPAGPHVQ 556
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 149 (57.5 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 55/189 (29%), Positives = 85/189 (44%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDAL 76
++VG LS DT+ DLK+ F KFG + T T SR F F+ FK E K L
Sbjct: 2 MFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFK--EPGSVEK-VL 58
Query: 77 QGSDFR--GNPI--KIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ + R G I K A P K ++VGG++ ++E++ E F +FG IE + D
Sbjct: 59 EQKEHRLDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMD 118
Query: 133 GNT------AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARD 186
T F+ + ED + + + G + + + + ++Q +S R
Sbjct: 119 PKTNKRRGFVFITFKE-EDPVKKVLEKKFHNVSGSKCEIKVAQPKEVYQQQQFSSGGGR- 176
Query: 187 GPIIGRGTG 195
G GRG G
Sbjct: 177 GSYGGRGRG 185
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 150 (57.9 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 43/123 (34%), Positives = 59/123 (47%)
Query: 23 LWVGNLSADTTDADLKELFGKFGA-------LDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++G LS DTT DLK+ F KFG LD +T SR F FV FK E D
Sbjct: 99 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITG-RSRGFGFVLFKESESVDKVMDQ 157
Query: 76 LQGSDFRGNPIKIEFARPAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD 132
+ G I + A+ K P K ++VGG+S +E++ E F FG +E + D
Sbjct: 158 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMD 216
Query: 133 GNT 135
T
Sbjct: 217 NKT 219
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 128 (50.1 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTYSS---RSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LKELFGKFG AL KV T S + F FV F+R EDA+ A D
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 186
Query: 76 LQGSDFRGNPIKI 88
+ G + G I +
Sbjct: 187 MNGKELNGKQIYV 199
Score = 88 (36.0 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + + E L + F FG I K + +G + FV +S E+A +A+ +N
Sbjct: 231 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMN 290
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR + + L V + + R+ N + R
Sbjct: 291 GRIVATKPLYVALAQRKEERQAHLTNQYMQR 321
Score = 39 (18.8 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 398 SPSPGIRTSPTQGIRQPLNHAPG 420
+P + T P ++QP H G
Sbjct: 456 NPQQHLNTQPQVAMQQPAVHVQG 478
Score = 37 (18.1 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 400 SPGIRTSP----TQGIRQPLNH 417
+P +RT P G+R P H
Sbjct: 439 TPAVRTVPQYKYAAGVRNPQQH 460
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 158 (60.7 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 52/160 (32%), Positives = 79/160 (49%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAA 72
++NL V L D TD +L LF G + D T YS +AFV F D++ A
Sbjct: 124 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSF-GYAFVDFTSEMDSQRA 182
Query: 73 KDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129
L G R +K+ +ARP S +L+V + +T++ ++L+ F K+G+I
Sbjct: 183 IKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNI 242
Query: 130 LKDGNT------AFVEYSRLEDAAEALKNINGR-QIGGEQ 162
L+D T AFV Y++ E+A EA+ +N GG Q
Sbjct: 243 LRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQ 282
>TAIR|locus:2182885 [details] [associations]
symbol:ML4 "MEI2-like 4" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0045836 "positive regulation of meiosis" evidence=IMP]
[GO:0045927 "positive regulation of growth" evidence=IMP]
[GO:0048507 "meristem development" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045927
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AL163652 GO:GO:0003723
eggNOG:NOG262869 HOGENOM:HOG000030212 ProtClustDB:CLSN2687061
GO:GO:0048507 GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059
EMBL:AK226960 IPI:IPI00536095 PIR:T48500 RefSeq:NP_196346.1
UniGene:At.5054 ProteinModelPortal:Q9LYN7 SMR:Q9LYN7 PaxDb:Q9LYN7
PRIDE:Q9LYN7 EnsemblPlants:AT5G07290.1 GeneID:830620
KEGG:ath:AT5G07290 TAIR:At5g07290 InParanoid:Q9LYN7 OMA:HEDIRIT
PhylomeDB:Q9LYN7 Genevestigator:Q9LYN7 Uniprot:Q9LYN7
Length = 907
Score = 176 (67.0 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 54/206 (26%), Positives = 96/206 (46%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKV-TTYSSRSFAFVYFKRVEDAKAAKDALQGSDF 81
L+V N+ + D +L LF +FG + + T +R F V + + A+ A AL G
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDVRALHTAGKNRGFIMVSYYDIRAAQKAARALHGRLL 272
Query: 82 RGNPIKIEFARPAKPSKH------LWVGGISQTVSKEELEEGFLKFGNIEDFK-FLKDGN 134
RG + I ++ P + K LWV + ++S EEL F +G I + + + + +
Sbjct: 273 RGRKLDIRYSIPKENPKENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENS 332
Query: 135 TAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPN-SHDARDGPIIGRG 193
++E+ + A AL+ +NG ++ G QL++ + P WP + D +G +
Sbjct: 333 QVYIEFFDVRKAKVALQGLNGLEVAGRQLKL--APTCPEGTSFWPQFASDDGEGGL--PK 388
Query: 194 TGFSDNHSAYKRSH-PQSSVGRNRDG 218
F++ SA+ H P + DG
Sbjct: 389 MAFNNLSSAHMGRHFPGILASTSIDG 414
Score = 39 (18.8 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 585 RYLGSKNRAGVAKFDDGTTLFLVPPSDFLSK 615
+Y A + ++ GT FL P DF +K
Sbjct: 752 KYTSKMLLAAIDEYCKGTYDFLYLPIDFKNK 782
>TAIR|locus:2156166 [details] [associations]
symbol:ML1 "MEI2-like protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048507 "meristem development" evidence=IGI] [GO:0045836
"positive regulation of meiosis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007126 EMBL:CP002688 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 EMBL:D86122
EMBL:AB022212 EMBL:AY062536 EMBL:BT008806 EMBL:AK316683
IPI:IPI00533512 RefSeq:NP_001032122.1 RefSeq:NP_568946.1
UniGene:At.340 ProteinModelPortal:Q8W4I9 SMR:Q8W4I9 IntAct:Q8W4I9
PaxDb:Q8W4I9 PRIDE:Q8W4I9 EnsemblPlants:AT5G61960.1
EnsemblPlants:AT5G61960.2 GeneID:836317 KEGG:ath:AT5G61960
TAIR:At5g61960 eggNOG:NOG262869 HOGENOM:HOG000030212
InParanoid:Q8W4I9 OMA:HEDIHIT PhylomeDB:Q8W4I9
ProtClustDB:CLSN2687061 Genevestigator:Q8W4I9 GO:GO:0048507
GO:GO:0045836 InterPro:IPR007201 Pfam:PF04059 Uniprot:Q8W4I9
Length = 915
Score = 174 (66.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 56/223 (25%), Positives = 107/223 (47%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKV-TTYSSRSFAFVYFKRVEDAKAAKDALQ 77
PS L VGN+S++ D +LK LF +FG + + T +R F V + + A+ A ALQ
Sbjct: 215 PSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQ 274
Query: 78 GSDFRGNPIKIEFA-RPAKPSKH------LWVGGISQTVSKEELEEGFLKFGNIEDFK-F 129
RG + I ++ PS+ L V + ++S +EL +G +++ +
Sbjct: 275 NKLLRGTKLDIRYSISKENPSQKDTSKGALLVNNLDSSISNQELNRLVKSYGEVKEIRRT 334
Query: 130 LKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPI 189
+ D + ++E+ + AA AL +NG ++ G++L++ + +R ++D +G +
Sbjct: 335 MHDNSQIYIEFFDVRAAAAALGGLNGLEVAGKKLQLVPTYPEGTRYTSQCAANDT-EGCL 393
Query: 190 IGRGTGFSDNHSAYKRSH-PQSSVGRNRDGPPSKILW--VGYP 229
T +S+ S + H P + DG +++ +G P
Sbjct: 394 --PKTSYSNTSSGHIGRHFPGMISSTSSDGGSMRVIHNSIGSP 434
Score = 41 (19.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 23/93 (24%), Positives = 33/93 (35%)
Query: 358 MRSIGAHGGHETLLSGPDFKDFHSMQDPNAKNLDPNWRRPSPSP--GIRTSPTQ------ 409
+ S G H G + P H M + K R + + SP Q
Sbjct: 631 LESSGFHIGSHGSMGIPGSSPSHPMDIGSHKTFSVGGNRMDVNSQNAVLRSPQQLSHLFP 690
Query: 410 GIRQPLNHAPGSWDVYDANQFQRDSKRLRVDGS 442
G R P+ PGS+D N+ R+ R + S
Sbjct: 691 G-RSPMGSMPGSFD--SPNERYRNLSHRRSESS 720
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 155 (59.6 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 58/197 (29%), Positives = 92/197 (46%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSR--SFAFVYFKRVEDAKAAKDALQ 77
S L V NLS ++ L+ELF K ++ R +AFV F EDAK A ++
Sbjct: 458 SKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCN 517
Query: 78 GSDFRGNPIKIEFARPA-------------KPSKHLWVGGISQTVSKEELEEGFLKFGNI 124
++ G I++EF+ P+ + SK L+V G+S+ ++E L E F G+I
Sbjct: 518 NTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSI 575
Query: 125 EDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQW 178
+ + D +T FV++S EDA A + + +I G ++ +DF ++P Q
Sbjct: 576 SA-RIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDF--AKPKGEFQR 632
Query: 179 PNSHDARDGPIIGRGTG 195
G GRG G
Sbjct: 633 GGGFGGGFGGRGGRGGG 649
Score = 142 (55.0 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 55/192 (28%), Positives = 90/192 (46%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY--SSRSFAFVYFKRVEDAK 70
++K+ + L+V NL T+ ++K +F + V SS+ A++ FK +A+
Sbjct: 361 ENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAE 420
Query: 71 AAKDALQGSDFRGNPIKIEFARPA-----------KPSKHLWVGGISQTVSKEELEEGFL 119
A + QG++ G + I++ + SK L V +S S+E L+E F
Sbjct: 421 KALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFK 480
Query: 120 KFGNIEDFKFLKDGNT---AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRRE 176
K +I+ G AFVE+ EDA EAL + N +I G +R++F S PS
Sbjct: 481 KATSIK-MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEF--SSPS--- 534
Query: 177 QWPNSH-DARDG 187
W + +AR G
Sbjct: 535 -WQKGNMNARGG 545
Score = 126 (49.4 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 56/247 (22%), Positives = 112/247 (45%)
Query: 16 EAPPSS-NLWVGNLSADTTDAD-----LKELFGKFGA-LDKVTTYSSRSFAFVYFKRVED 68
+AP S+ +L+V NL+ T D + +KE FGK + +V SS+ F +V F ED
Sbjct: 273 KAPASAFSLFVKNLTP-TKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAED 331
Query: 69 AKAAKDALQGSDFRGNPIKIEFARPAKPSKH---------LWVGGISQTVSKEELEEGFL 119
A L G G IK+E A+ + K L+V + V+++E++
Sbjct: 332 MDKALQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKN--- 387
Query: 120 KFGNIEDFKFL--KDGNT---AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174
F N + + + K+G++ A++E+ +A +AL+ G ++ G + +D+ + S+
Sbjct: 388 VFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYT-GEKSQ 446
Query: 175 REQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSS---VGRNRDGPPSKILWVGYPPS 231
+E + +I ++ + + +++ + +N G P +V +P +
Sbjct: 447 QESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTA 506
Query: 232 VQMDEQM 238
E +
Sbjct: 507 EDAKEAL 513
Score = 76 (31.8 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 257 SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS--SELAPGKDYPGSYSGTKG 312
S+ + FV+F S ++A+ AKE ++ + ++T+ F+ E G + G + G G
Sbjct: 588 SKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRGGGFGGGFGGRGG 645
Score = 51 (23.0 bits), Expect = 0.00085, Sum P(4) = 0.00085
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 258 RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG 300
+ Y+FVEF + ++A+ A I + FSS G
Sbjct: 496 KGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKG 538
Score = 39 (18.8 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 1 MAPPPSKFNRAYDDKEA 17
MAPPP K + +++ +
Sbjct: 13 MAPPPKKVEESEEEESS 29
Score = 38 (18.4 bits), Expect = 0.00085, Sum P(4) = 0.00085
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 910 AGQGTSDGEVDKNQRYQSTLQFA 932
A + DGE+D N+ TL FA
Sbjct: 605 AKEAMEDGEIDGNK---VTLDFA 624
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 155 (59.6 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 58/197 (29%), Positives = 92/197 (46%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSR--SFAFVYFKRVEDAKAAKDALQ 77
S L V NLS ++ L+ELF K ++ R +AFV F EDAK A ++
Sbjct: 460 SKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCN 519
Query: 78 GSDFRGNPIKIEFARPA-------------KPSKHLWVGGISQTVSKEELEEGFLKFGNI 124
++ G I++EF+ P+ + SK L+V G+S+ ++E L E F G+I
Sbjct: 520 NTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSI 577
Query: 125 EDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQW 178
+ + D +T FV++S EDA A + + +I G ++ +DF ++P Q
Sbjct: 578 SA-RIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDF--AKPKGEFQR 634
Query: 179 PNSHDARDGPIIGRGTG 195
G GRG G
Sbjct: 635 GGGFGGGFGGRGGRGGG 651
Score = 142 (55.0 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 55/192 (28%), Positives = 90/192 (46%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY--SSRSFAFVYFKRVEDAK 70
++K+ + L+V NL T+ ++K +F + V SS+ A++ FK +A+
Sbjct: 363 ENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAE 422
Query: 71 AAKDALQGSDFRGNPIKIEFARPA-----------KPSKHLWVGGISQTVSKEELEEGFL 119
A + QG++ G + I++ + SK L V +S S+E L+E F
Sbjct: 423 KALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFK 482
Query: 120 KFGNIEDFKFLKDGNT---AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRRE 176
K +I+ G AFVE+ EDA EAL + N +I G +R++F S PS
Sbjct: 483 KATSIK-MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEF--SSPS--- 536
Query: 177 QWPNSH-DARDG 187
W + +AR G
Sbjct: 537 -WQKGNMNARGG 547
Score = 126 (49.4 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 56/247 (22%), Positives = 111/247 (44%)
Query: 16 EAPPSS-NLWVGNLSADTTDAD-----LKELFGKFGA-LDKVTTYSSRSFAFVYFKRVED 68
E P S+ +L+V NL+ T D + +KE FGK + +V SS+ F +V F ED
Sbjct: 275 ETPASAFSLFVKNLTP-TKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAED 333
Query: 69 AKAAKDALQGSDFRGNPIKIEFARPAKPSKH---------LWVGGISQTVSKEELEEGFL 119
A L G G IK+E A+ + K L+V + V+++E++
Sbjct: 334 MDKALQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKN--- 389
Query: 120 KFGNIEDFKFL--KDGNT---AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174
F N + + + K+G++ A++E+ +A +AL+ G ++ G + +D+ + S+
Sbjct: 390 VFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYT-GEKSQ 448
Query: 175 REQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSS---VGRNRDGPPSKILWVGYPPS 231
+E + +I ++ + + +++ + +N G P +V +P +
Sbjct: 449 QESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTA 508
Query: 232 VQMDEQM 238
E +
Sbjct: 509 EDAKEAL 515
Score = 76 (31.8 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 257 SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS--SELAPGKDYPGSYSGTKG 312
S+ + FV+F S ++A+ AKE ++ + ++T+ F+ E G + G + G G
Sbjct: 590 SKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRGGGFGGGFGGRGG 647
Score = 51 (23.0 bits), Expect = 0.00086, Sum P(4) = 0.00086
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 258 RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG 300
+ Y+FVEF + ++A+ A I + FSS G
Sbjct: 498 KGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKG 540
Score = 39 (18.8 bits), Expect = 4.3e-08, Sum P(3) = 4.3e-08
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 1 MAPPPSKFNRAYDDKEA 17
MAPPP K + +++ +
Sbjct: 17 MAPPPKKVEESEEEESS 33
Score = 38 (18.4 bits), Expect = 0.00086, Sum P(4) = 0.00086
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 910 AGQGTSDGEVDKNQRYQSTLQFA 932
A + DGE+D N+ TL FA
Sbjct: 607 AKEAMEDGEIDGNK---VTLDFA 626
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 152 (58.6 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 51/171 (29%), Positives = 84/171 (49%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSR--SFAFVYFKRVEDAKAAKDALQ 77
S L V NLS ++ L+ELF K ++ R +AFV F EDAK A ++
Sbjct: 460 SKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCN 519
Query: 78 GSDFRGNPIKIEFARPA-------------KPSKHLWVGGISQTVSKEELEEGFLKFGNI 124
++ G I++EF+ P+ + SK L+V G+S+ ++E L E F G+I
Sbjct: 520 NTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFE--GSI 577
Query: 125 EDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169
+ + D +T FV++S EDA A + + +I G ++ +DF +
Sbjct: 578 SA-RIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627
Score = 142 (55.0 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 55/192 (28%), Positives = 90/192 (46%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY--SSRSFAFVYFKRVEDAK 70
++K+ + L+V NL T+ ++K +F + V SS+ A++ FK +A+
Sbjct: 363 ENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAE 422
Query: 71 AAKDALQGSDFRGNPIKIEFARPA-----------KPSKHLWVGGISQTVSKEELEEGFL 119
A + QG++ G + I++ + SK L V +S S+E L+E F
Sbjct: 423 KALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFK 482
Query: 120 KFGNIEDFKFLKDGNT---AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRRE 176
K +I+ G AFVE+ EDA EAL + N +I G +R++F S PS
Sbjct: 483 KATSIK-MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEF--SSPS--- 536
Query: 177 QWPNSH-DARDG 187
W + +AR G
Sbjct: 537 -WQKGNMNARGG 547
Score = 140 (54.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 20 SSNLWVGNLSADTTDADLKELF-GKFGA---LDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
S L+V LS DTT+ L+E F G A D+ T SS+ F FV F EDAKAAK+A
Sbjct: 552 SKTLFVRGLSEDTTEETLRESFEGSISARIVTDR-DTGSSKGFGFVDFSSPEDAKAAKEA 610
Query: 76 LQGSDFRGNPIKIEFARP 93
++ + GN + ++FA+P
Sbjct: 611 MEDGEIDGNKVTLDFAKP 628
Score = 126 (49.4 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 56/247 (22%), Positives = 111/247 (44%)
Query: 16 EAPPSS-NLWVGNLSADTTDAD-----LKELFGKFGA-LDKVTTYSSRSFAFVYFKRVED 68
E P S+ +L+V NL+ T D + +KE FGK + +V SS+ F +V F ED
Sbjct: 275 ETPASAFSLFVKNLTP-TKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAED 333
Query: 69 AKAAKDALQGSDFRGNPIKIEFARPAKPSKH---------LWVGGISQTVSKEELEEGFL 119
A L G G IK+E A+ + K L+V + V+++E++
Sbjct: 334 MDKALQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKN--- 389
Query: 120 KFGNIEDFKFL--KDGNT---AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174
F N + + + K+G++ A++E+ +A +AL+ G ++ G + +D+ + S+
Sbjct: 390 VFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYT-GEKSQ 448
Query: 175 REQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSS---VGRNRDGPPSKILWVGYPPS 231
+E + +I ++ + + +++ + +N G P +V +P +
Sbjct: 449 QESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTA 508
Query: 232 VQMDEQM 238
E +
Sbjct: 509 EDAKEAL 515
Score = 76 (31.8 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 257 SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS--SELAPGKDYPGSYSGTKG 312
S+ + FV+F S ++A+ AKE ++ + ++T+ F+ E G + G + G G
Sbjct: 590 SKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRGGGFGGGFGGRGG 647
Score = 51 (23.0 bits), Expect = 0.00088, Sum P(4) = 0.00088
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 258 RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG 300
+ Y+FVEF + ++A+ A I + FSS G
Sbjct: 498 KGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKG 540
Score = 39 (18.8 bits), Expect = 4.4e-08, Sum P(3) = 4.4e-08
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 1 MAPPPSKFNRAYDDKEA 17
MAPPP K + +++ +
Sbjct: 17 MAPPPKKVEESEEEESS 33
Score = 38 (18.4 bits), Expect = 0.00088, Sum P(4) = 0.00088
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 910 AGQGTSDGEVDKNQRYQSTLQFA 932
A + DGE+D N+ TL FA
Sbjct: 607 AKEAMEDGEIDGNK---VTLDFA 626
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 146 (56.5 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 44/174 (25%), Positives = 84/174 (48%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGAL------DKVTTYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + V T S +A++ F++ DA+ A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G PI+I +++ P ++++ + ++ + L + F FGNI
Sbjct: 69 LDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 128 KFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K + D + + FV + E A A++ +NG + ++ V +S+ R +
Sbjct: 129 KVVCDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAE 182
Score = 93 (37.8 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDA 75
+N++V NL D + L++LF +FG + V SR F FV F++ EDA+ A
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTD 250
Query: 76 LQGSDFRG 83
+ G + G
Sbjct: 251 MNGKEVSG 258
Score = 92 (37.4 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 34/144 (23%), Positives = 62/144 (43%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + ++ E+L + F +G I K + +G + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGT---GFSDNHSAY---KRSHP 208
GR +G + L V + + R+ N + R + G+ G ++Y P
Sbjct: 355 GRIVGTKPLYVALAQRKEERKAILTNQYIQRLSTMRALGSPLLGSLQQPTSYFLPAVPQP 414
Query: 209 QSSVGRNRDGPPSKI--LWVGYPP 230
+ GPP + W PP
Sbjct: 415 PAQSPYYASGPPVQPPPRWTAQPP 438
Score = 65 (27.9 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 232 VQMDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEFRSVDEARRAKEGLQGR 281
V +DE+ L + FG+I +K S SR + FV F ++A++A + G+
Sbjct: 200 VDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGK 254
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 159 (61.0 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 58/205 (28%), Positives = 93/205 (45%)
Query: 6 SKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFA 59
SK N + + ++ +++G LS DT+ DL E +FG + T T SR F
Sbjct: 136 SKINASKNQQD---DGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 192
Query: 60 FVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK---PSKHLWVGGISQTVSKEEL 114
FV FK DA + L+ + + G I + A+ K P K ++VGG+S S+E++
Sbjct: 193 FVLFK---DAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQI 249
Query: 115 EEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168
+E F FG IE+ + D T F+ Y+ E + L++ QIG + +
Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEIKVA 308
Query: 169 RSQPSRREQWPNSHDARDGPIIGRG 193
+ + R+Q R GRG
Sbjct: 309 QPKEVYRQQQQQQKGGRGAAAGGRG 333
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 159 (61.0 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 58/205 (28%), Positives = 93/205 (45%)
Query: 6 SKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFA 59
SK N + + ++ +++G LS DT+ DL E +FG + T T SR F
Sbjct: 136 SKINASKNQQD---DGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 192
Query: 60 FVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK---PSKHLWVGGISQTVSKEEL 114
FV FK DA + L+ + + G I + A+ K P K ++VGG+S S+E++
Sbjct: 193 FVLFK---DAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQI 249
Query: 115 EEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168
+E F FG IE+ + D T F+ Y+ E + L++ QIG + +
Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEIKVA 308
Query: 169 RSQPSRREQWPNSHDARDGPIIGRG 193
+ + R+Q R GRG
Sbjct: 309 QPKEVYRQQQQQQKGGRGAAAGGRG 333
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 159 (61.0 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 58/205 (28%), Positives = 93/205 (45%)
Query: 6 SKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFA 59
SK N + + ++ +++G LS DT+ DL E +FG + T T SR F
Sbjct: 136 SKINASKNQQD---DGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 192
Query: 60 FVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK---PSKHLWVGGISQTVSKEEL 114
FV FK DA + L+ + + G I + A+ K P K ++VGG+S S+E++
Sbjct: 193 FVLFK---DAASVDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQI 249
Query: 115 EEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168
+E F FG IE+ + D T F+ Y+ E + L++ QIG + +
Sbjct: 250 KEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES-RYHQIGSGKCEIKVA 308
Query: 169 RSQPSRREQWPNSHDARDGPIIGRG 193
+ + R+Q R GRG
Sbjct: 309 QPKEVYRQQQQQQKGGRGAAAGGRG 333
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 148 (57.2 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 44/175 (25%), Positives = 87/175 (49%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVEDAKAA 72
P ++L++G+L D T+A L E F G + + T S S+A++ F++ DA+ A
Sbjct: 9 PLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G PI+I +++ P ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSC 128
Query: 128 KFLKD--GNTA--FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQW 178
K + D G+ FV + E A A++ +NG + ++ V +S+ R ++
Sbjct: 129 KVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEY 183
Score = 63 (27.2 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 22/101 (21%), Positives = 40/101 (39%)
Query: 234 MDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRI 288
MD++ L FG +K S SR + FV + + +EA++A + G+ N I
Sbjct: 202 MDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Query: 289 TIMFSSSELAPGKDYPGSYSGTKGPRSEMFFGDQIRPSQLD 329
+ + + + + K R + G + LD
Sbjct: 262 YVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLD 302
>UNIPROTKB|F1NWI9 [details] [associations]
symbol:SYNCRIP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
ArrayExpress:F1NWI9 Uniprot:F1NWI9
Length = 622
Score = 161 (61.7 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 51/187 (27%), Positives = 89/187 (47%)
Query: 55 SRSFAFVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK-PS-------KHLWVGG 104
+R F F+ ++ + A A+ L + GN + +E+A P + P K L+V
Sbjct: 284 NRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMAKVKVLFVRN 343
Query: 105 ISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164
++ TV++E LE+ F +FG +E K LKD AF+ + + A +A++ +NG+ + GE +
Sbjct: 344 LANTVTEEILEKAFSQFGKLERVKKLKD--YAFIHFDERDGAVKAMEEMNGKDLEGENIE 401
Query: 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSH-PQSSVGRNRDGPPSKI 223
+ F + +R++ A + D++ Y H P + GR R G
Sbjct: 402 IVFAKPPDQKRKERKAQRQAAKNQMY-------DDYYYYGPPHMPPPTRGRGRGGRGG-- 452
Query: 224 LWVGYPP 230
GYPP
Sbjct: 453 --YGYPP 457
Score = 93 (37.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 46/185 (24%), Positives = 84/185 (45%)
Query: 3 PPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSS 55
PPP Y ++ + ++VG + D + +L LF K G + D +T +
Sbjct: 146 PPPES---VYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLN- 201
Query: 56 RSFAFVYFKRVEDAKAAKDALQGSDFR-GNPIKIEFARPAKPSKHLWVGGISQTVSKEEL 114
R +AFV F E A+ A + R G I + + + L+VG I ++ +KE++
Sbjct: 202 RGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS---VANNRLFVGSIPKSKTKEQI 258
Query: 115 EEGFLK----------FGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNI-NGR-QIGGEQ 162
E F K + +D K K+ F+EY + AA+A + + +G+ ++ G
Sbjct: 259 VEEFSKVTEGLTDVILYHQPDDKK--KNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNV 316
Query: 163 LRVDF 167
+ V++
Sbjct: 317 VTVEW 321
Score = 87 (35.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 222 KILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGR 281
K+L+V + + E++L A FG++ER+K ++Y+F+ F D A +A E + G+
Sbjct: 337 KVLFVRNLANT-VTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGK 393
Query: 282 LFNDPRITIMFS 293
I I+F+
Sbjct: 394 DLEGENIEIVFA 405
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 157 (60.3 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 47/188 (25%), Positives = 91/188 (48%)
Query: 5 PSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYS--- 54
P+ + D+ + +NL + L + + +L+ LF G + DK+ S
Sbjct: 40 PNGYEDPMGDEPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHH 99
Query: 55 ----SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQ 107
S + FV + DA+ A + L G + IK+ +ARP+ +L++ G+ +
Sbjct: 100 TLGHSLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSDGIKDANLYISGLPK 159
Query: 108 TVSKEELEEGFLKFGNIEDFKFLKD---G---NTAFVEYSRLEDAAEALKNINGRQIGG- 160
T++++ +E+ F ++G I + + L D G AF+ + + +A EA+K++NG + G
Sbjct: 160 TMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGA 219
Query: 161 -EQLRVDF 167
E + V F
Sbjct: 220 SEPITVKF 227
>UNIPROTKB|Q96T58 [details] [associations]
symbol:SPEN "Msx2-interacting protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007219 "Notch signaling pathway"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0050769 "positive regulation of neurogenesis" evidence=IMP]
[GO:0001191 "RNA polymerase II transcription factor binding
transcription factor activity involved in negative regulation of
transcription" evidence=IDA] [GO:0001085 "RNA polymerase II
transcription factor binding" evidence=IPI] [GO:0017053
"transcriptional repressor complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0017053 GO:GO:0003714 GO:GO:0019048
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007219
GO:GO:0003700 GO:GO:0003723 GO:GO:0050769 GO:GO:0003697
eggNOG:NOG12793 GO:GO:0001191 InterPro:IPR012921 Pfam:PF07744
EMBL:AL450998 PROSITE:PS50917 Gene3D:2.40.290.10 InterPro:IPR016194
SUPFAM:SSF100939 EMBL:AF356524 EMBL:AL034555 EMBL:AL096858
EMBL:AK000882 EMBL:AK022949 EMBL:AB023146 IPI:IPI00045914
RefSeq:NP_055816.2 UniGene:Hs.731396 PDB:1OW1 PDBsum:1OW1
ProteinModelPortal:Q96T58 SMR:Q96T58 IntAct:Q96T58 STRING:Q96T58
PhosphoSite:Q96T58 DMDM:41688816 PaxDb:Q96T58 PRIDE:Q96T58
Ensembl:ENST00000375759 GeneID:23013 KEGG:hsa:23013 UCSC:uc001axk.1
CTD:23013 GeneCards:GC01P016174 H-InvDB:HIX0159662 HGNC:HGNC:17575
HPA:HPA015825 MIM:613484 neXtProt:NX_Q96T58 PharmGKB:PA134895302
HOGENOM:HOG000231295 HOVERGEN:HBG045583 InParanoid:Q96T58
OMA:KHLKPEQ OrthoDB:EOG4JM7NS PhylomeDB:Q96T58 ChiTaRS:SPEN
EvolutionaryTrace:Q96T58 GenomeRNAi:23013 NextBio:43936
ArrayExpress:Q96T58 Bgee:Q96T58 CleanEx:HS_SPEN
Genevestigator:Q96T58 GermOnline:ENSG00000065526 InterPro:IPR010912
Uniprot:Q96T58
Length = 3664
Score = 186 (70.5 bits), Expect = 6.2e-08, Sum P(5) = 6.2e-08
Identities = 45/158 (28%), Positives = 78/158 (49%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL---DKVTTYSSRSFAFVYFKRVEDA 69
D+ + L++GNL TT DL+ +F +FG + D +AF+ + +
Sbjct: 430 DEFHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASV 489
Query: 70 KAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129
A + G N +K+ F + + P+ +W+ G+S VS + L F ++G + F
Sbjct: 490 CKAIKKMDGEYLGNNRLKLGFGK-SMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVF 548
Query: 130 LKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167
+ A V Y+ +E A A+K GR+IGG +++VDF
Sbjct: 549 DRLKGMALVLYNEIEYAQAAVKETKGRKIGGNKIKVDF 586
Score = 60 (26.2 bits), Expect = 6.2e-08, Sum P(5) = 6.2e-08
Identities = 30/123 (24%), Positives = 51/123 (41%)
Query: 520 GTPVCRARCVPFGKGIES-ELPEVVNCSARTGLDMLAKHYAEAIGFDIVFFLPDSED--D 576
G V R +P +G + + + A T L+ +A+ + ++ LP D D
Sbjct: 3529 GNNVLAHRSLPLSEGGPPLRIAQRMRLEA-TQLEGVARRMTVETDYCLLLALPCGRDQED 3587
Query: 577 FASYTE-----FLRYLGSKNRAGVAKFDD-GTT-----LFLVPPSDFLSKVLKVVGPERL 625
S TE F+ YL +K AG+ + G+ L + PP +F L + P+ L
Sbjct: 3588 VVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLSRLAPDLL 3647
Query: 626 YGV 628
+
Sbjct: 3648 ASI 3650
Score = 50 (22.7 bits), Expect = 9.2e-07, Sum P(4) = 9.2e-07
Identities = 35/145 (24%), Positives = 58/145 (40%)
Query: 610 SDFLSKVLKVVGPERLYGVVLKLPQQAMVPPQTVDKQNIPPPHAEYGLTRPKEEHVLPVD 669
SD LSK+ + V + P +A VPP P P E R + ++ D
Sbjct: 2400 SD-LSKIPSTENSSQEISVEERTPTKASVPPDLPPPPQ-PAPVDEEPQARFRVHSIIESD 2457
Query: 670 YNRFSHDDSKVQSKMHFPHASE--PLIAHSSSMDYGSNNAAAISQAGVKLTPELIATLT- 726
D S + A++ P +A S + + S + P +T +
Sbjct: 2458 PVTPPSDPSIPIPTLPSVTAAKLSPPVA-SGGIPHQSPPTKVTEWITRQEEPRAQSTPSP 2516
Query: 727 SLIPATKSAEVAPGSSSARPLLAEP 751
+L P TK+++V SS+ R +L +P
Sbjct: 2517 ALPPDTKASDVDTSSSTLRKILMDP 2541
Score = 45 (20.9 bits), Expect = 6.2e-08, Sum P(5) = 6.2e-08
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 308 SGTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPNNFAGHLQPADIRGPSMPMRS 360
+ +GP E G+ ++P Q P QS QP A P+ + P P S
Sbjct: 3339 TAAQGPPPE---GEPLQPPQ-----PVQSTQPAQPAPPCPPSQLGQPGQPPSS 3383
Score = 43 (20.2 bits), Expect = 6.2e-08, Sum P(5) = 6.2e-08
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 201 SAYKRSHPQSSVGRNRDGPPSKIL-WV 226
+A K S P +S G PP+K+ W+
Sbjct: 2476 TAAKLSPPVASGGIPHQSPPTKVTEWI 2502
Score = 41 (19.5 bits), Expect = 9.8e-08, Sum P(4) = 9.8e-08
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 219 PPSKILWVGYPPSVQMDE 236
PPS++ G PPS +M +
Sbjct: 3370 PPSQLGQPGQPPSSKMPQ 3387
Score = 40 (19.1 bits), Expect = 1.2e-07, Sum P(4) = 1.2e-07
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 425 YDANQFQRDSKRLRVDGSMPIDDAT-FPSR 453
YD NQ + + +R G+ P D +P+R
Sbjct: 624 YDYNQDRTYYESVRTPGTYPEDSRRDYPAR 653
Score = 40 (19.1 bits), Expect = 8.5e-06, Sum P(4) = 8.5e-06
Identities = 20/66 (30%), Positives = 26/66 (39%)
Query: 708 AAISQAGVKLTPELIATLTSLIPATKSAEV-APGSSSARPLL-AEPHV-QSIEQLGNHYN 764
A+ SQA + PE +T PA KS E P + AEP Q E
Sbjct: 1740 ASFSQAESNVDPEPDSTQPLSKPAQKSEEANEPKAEKPDATADAEPDANQKAEAAPESQP 1799
Query: 765 PQAQSL 770
P ++ L
Sbjct: 1800 PASEDL 1805
Score = 38 (18.4 bits), Expect = 9.2e-07, Sum P(4) = 9.2e-07
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 861 SVFQQPNNPTAVSNQVNLSQPQNVMTVS 888
SV +P+ P ++ Q QP V T S
Sbjct: 3436 SVSMKPDLPVSLPTQTAPKQPLFVPTTS 3463
Score = 38 (18.4 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 729 IPATKSAEVAPGSSSARPLLAEPHVQSIEQLGNHYNPQAQS 769
+P+ +A+++P +S P + E + P+AQS
Sbjct: 2472 LPSVTAAKLSPPVASGGIPHQSPPTKVTEWITRQEEPRAQS 2512
Score = 37 (18.1 bits), Expect = 6.2e-08, Sum P(5) = 6.2e-08
Identities = 5/15 (33%), Positives = 13/15 (86%)
Query: 716 KLTPELIATLTSLIP 730
+L P+L+A+++++ P
Sbjct: 3641 RLAPDLLASISNISP 3655
Score = 37 (18.1 bits), Expect = 8.5e-06, Sum P(4) = 8.5e-06
Identities = 19/81 (23%), Positives = 36/81 (44%)
Query: 680 VQSKMHFPHASEPLIAHSSSMDYGSNNAAAISQAGVKLTPELIATLTSLIPATK-SAEVA 738
V SK + P + ++S + AA + K+ P + +TS+I S ++
Sbjct: 2576 VDSKKPLEEKTAPPVTNNSEIQASEVLVAADKE---KVAPVIAPKITSVISRMPVSIDL- 2631
Query: 739 PGSSSARPLLAEPHVQSIEQL 759
+S + LA+P Q++ L
Sbjct: 2632 --ENSQKITLAKPAPQTLTGL 2650
Score = 37 (18.1 bits), Expect = 1.7e-05, Sum P(4) = 1.7e-05
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 728 LIPATKSAEVAPGSSSARPLLAEPH---VQSIEQL 759
L+ K+ E A S A+P +EP V+ +EQ+
Sbjct: 1667 LVTEEKTVEPATVSEEAKPA-SEPAPAPVEQLEQV 1700
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 148 (57.2 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 44/175 (25%), Positives = 86/175 (49%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY----SSRS--FAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + S RS +A++ F++ DA+ A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G P++I +++ P ++++ + ++ + L + F FGNI
Sbjct: 69 LDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSC 128
Query: 128 KFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQW 178
K + D N + FV + E A A++ +NG + ++ V +S+ R ++
Sbjct: 129 KVVCDENGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEF 183
Score = 62 (26.9 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 21/101 (20%), Positives = 39/101 (38%)
Query: 234 MDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRI 288
MD+ L FG+ +K + S+ + FV F +EA++A + G+ N +
Sbjct: 202 MDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMV 261
Query: 289 TIMFSSSELAPGKDYPGSYSGTKGPRSEMFFGDQIRPSQLD 329
+ + L + + K R + G + LD
Sbjct: 262 YVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLD 302
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 166 (63.5 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 45/162 (27%), Positives = 85/162 (52%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVEDAKAAK 73
+++L+VG+L+ D T+A L E+F G + + T S +A+V + + DA+ A
Sbjct: 15 TASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERAL 74
Query: 74 DALQGSDFRGNPIKIEFAR--PA---KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFK 128
D L ++ +G P ++ ++ P+ + +++V + +++ + L + F FGNI K
Sbjct: 75 DTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCK 134
Query: 129 -----FLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165
F K + FV Y E A EA++ +NG Q+G + + V
Sbjct: 135 VATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYV 176
Score = 47 (21.6 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 234 MDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEFRSVDEARRAKEGLQGRLFN 284
+D+ ML FG I K S+ + FV F S +EA +A + ++ N
Sbjct: 461 IDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIIN 516
Score = 38 (18.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 17/83 (20%), Positives = 29/83 (34%)
Query: 426 DANQFQRDSKRLRVDGSMPIDDATFPSRKIDDHGLVLDQSYGLGSITGGPASGAFVNVQG 485
DA++ ++ K + D + D + + D + G T A+
Sbjct: 288 DADKTDKNDKNNKADKNEKGDSSNANNNATATGATTTDTTTTPGETTTTTANADSTGANN 347
Query: 486 RNRLSP-VASKVTAGGFGRNPID 507
N LSP + T G N I+
Sbjct: 348 NNGLSPNTNTSNTTTGSSNNSIN 370
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 166 (63.5 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 45/162 (27%), Positives = 85/162 (52%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVEDAKAAK 73
+++L+VG+L+ D T+A L E+F G + + T S +A+V + + DA+ A
Sbjct: 15 TASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERAL 74
Query: 74 DALQGSDFRGNPIKIEFAR--PA---KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFK 128
D L ++ +G P ++ ++ P+ + +++V + +++ + L + F FGNI K
Sbjct: 75 DTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCK 134
Query: 129 -----FLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165
F K + FV Y E A EA++ +NG Q+G + + V
Sbjct: 135 VATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYV 176
Score = 47 (21.6 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 234 MDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEFRSVDEARRAKEGLQGRLFN 284
+D+ ML FG I K S+ + FV F S +EA +A + ++ N
Sbjct: 461 IDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIIN 516
Score = 38 (18.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 17/83 (20%), Positives = 29/83 (34%)
Query: 426 DANQFQRDSKRLRVDGSMPIDDATFPSRKIDDHGLVLDQSYGLGSITGGPASGAFVNVQG 485
DA++ ++ K + D + D + + D + G T A+
Sbjct: 288 DADKTDKNDKNNKADKNEKGDSSNANNNATATGATTTDTTTTPGETTTTTANADSTGANN 347
Query: 486 RNRLSP-VASKVTAGGFGRNPID 507
N LSP + T G N I+
Sbjct: 348 NNGLSPNTNTSNTTTGSSNNSIN 370
>UNIPROTKB|G3V6S8 [details] [associations]
symbol:Sfrs6 "Similar to dJ862K6.2.2 (Splicing factor,
arginine/serine-rich 6 (SRP55-2)(Isoform 2)), isoform CRA_a"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474005 GeneTree:ENSGT00700000104103 KO:K12893 OMA:CKERSHG
CTD:6431 RefSeq:NP_001014207.2 UniGene:Rn.3175
ProteinModelPortal:G3V6S8 SMR:G3V6S8 Ensembl:ENSRNOT00000008427
GeneID:362264 KEGG:rno:362264 NextBio:679254 Uniprot:G3V6S8
Length = 339
Score = 158 (60.7 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 56/218 (25%), Positives = 106/218 (48%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIG 159
+++G +S V +++++ F +G + + LK+G FVE+ DA +A+ +N +++
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEID-LKNGY-GFVEFEDSRDADDAVYELNSKELC 61
Query: 160 GEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGP 219
GE++ V+ R P RR++ S+ +R G G G+S ++ GR++ GP
Sbjct: 62 GERVIVEHARG-P-RRDRDGYSYGSRSG-----GGGYSSRRTS----------GRDKYGP 104
Query: 220 PSKILW--VGYPPSVQMDEQMLHNAMILFGEIERIKSYPSR-NYSFVEFRSVDEARRAKE 276
P + + + S + Q L + M GE+ ++ R N +EFRS + +RA +
Sbjct: 105 PVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALD 164
Query: 277 GLQGRLFNDPRITIMFSSSELAPGKDYPGSYSGTKGPR 314
L G N I ++ + + Y GS S ++ R
Sbjct: 165 KLDGTEINGRNIRLIEDKPRTSHRRSYSGSRSRSRSRR 202
Score = 41 (19.5 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 654 EYGLTRPKEEHVLPVDYNRF---SHDDSKVQSKMHFPHASEPLIAHSSS 699
+YG +R + P + + S S+ QS+ H P + P A S S
Sbjct: 268 KYGKSRSRSRSRSPKENGKGDIKSKSRSRSQSRSHSPLPAPPSKARSMS 316
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 156 (60.0 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 51/188 (27%), Positives = 91/188 (48%)
Query: 20 SSNLWVGNLSADTTDADLKELFGK--FGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQ 77
S L + NL+ T+ L+E+F K F + + S+ +AF+ F EDAK A ++
Sbjct: 139 SKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 198
Query: 78 GSDFRGNPIKIEFARP-------AKPSKHLWVGGISQTVSKEELEEGF---LKFGNIEDF 127
+ G I++E P ++PSK L+V G+S+ ++E L+E F ++ + D
Sbjct: 199 KREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEETTEETLKESFDGSIRARIVTDR 258
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDG 187
+ FV+++ EDA A + + +I G ++ +D+ ++P + R G
Sbjct: 259 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW--AKPKGEGGFGGRGGGRGG 316
Query: 188 PIIGRGTG 195
GRG G
Sbjct: 317 -FGGRGGG 323
Score = 141 (54.7 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 35/88 (39%), Positives = 51/88 (57%)
Query: 10 RAYDDKEAPPSSNLWVGNLSADTTDADLKELF-GKFGA---LDKVTTYSSRSFAFVYFKR 65
R + + PS L+V LS +TT+ LKE F G A D+ T SS+ F FV F
Sbjct: 215 RGSPNARSQPSKTLFVKGLSEETTEETLKESFDGSIRARIVTDRETG-SSKGFGFVDFNS 273
Query: 66 VEDAKAAKDALQGSDFRGNPIKIEFARP 93
EDAKAAK+A++ + GN + +++A+P
Sbjct: 274 EEDAKAAKEAMEDGEIDGNKVTLDWAKP 301
Score = 109 (43.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 33/105 (31%), Positives = 54/105 (51%)
Query: 77 QGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLK--FGNIEDFKFLKDGN 134
Q DFRG + + + SK L + ++ + ++E L+E F K F + + K
Sbjct: 123 QNQDFRGG----KNSTWSGESKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKG 178
Query: 135 TAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL--RSQPSRREQ 177
AF+E++ EDA EAL + N R+I G +R++ R P+ R Q
Sbjct: 179 YAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQ 223
Score = 63 (27.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 28/104 (26%), Positives = 51/104 (49%)
Query: 215 NRDGPPSKILWV-GYPPSVQMDEQMLHNAMILFGEIE-RI----KSYPSRNYSFVEFRSV 268
N PSK L+V G S + E+ L + G I RI ++ S+ + FV+F S
Sbjct: 219 NARSQPSKTLFVKGL--SEETTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSE 274
Query: 269 DEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPGSYSGTKG 312
++A+ AKE ++ + ++T+ ++ + G+ G G +G
Sbjct: 275 EDAKAAKEAMEDGEIDGNKVTLDWAKPK---GEGGFGGRGGGRG 315
>UNIPROTKB|E7ETM7 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
Bgee:E7ETM7 Uniprot:E7ETM7
Length = 473
Score = 158 (60.7 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 54/186 (29%), Positives = 87/186 (46%)
Query: 55 SRSFAFVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK-PS-------KHLWVGG 104
+R F F+ ++ + A A+ L + GN + +E+A P + P K L+V
Sbjct: 128 NRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRN 187
Query: 105 ISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164
++ TV++E LE+ F +FG +E K LKD AFV + A +A+ +NG++I GE++
Sbjct: 188 LATTVTEEILEKSFSEFGKLERVKKLKD--YAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 245
Query: 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKIL 224
+ L P ++ + AR R T + D + P GR R G
Sbjct: 246 I-VLAKPPDKKRK--ERQAARQA---SRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY- 298
Query: 225 WVGYPP 230
GYPP
Sbjct: 299 --GYPP 302
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 114 (45.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 27/94 (28%), Positives = 48/94 (51%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIG 159
+++G I+ ++EL FG I DFKF + AFV+Y E AA A+ + G +
Sbjct: 414 VYLGNIAHFTQQQELIPLLQNFGFIVDFKFHPERGCAFVKYDTHERAALAIIQLAGFNLN 473
Query: 160 GEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRG 193
G L+ + + +P + + +P + + P+ G G
Sbjct: 474 GRPLKCGWGKERPPQFQNFPRNGNMHQVPMYGPG 507
Score = 94 (38.1 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDK------VTTYSSRSFAFVYFKRVEDAKAA 72
P N++VG+LS + D L+ F KF +L + + T SR + FV F DA+ A
Sbjct: 171 PLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELA 230
Query: 73 KDALQGSDFRGNPIKIEFA 91
+ G G I+ +A
Sbjct: 231 LQTMNGEWLCGRAIRCNWA 249
Score = 54 (24.1 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 23 LWVGNLSADTTDADLKELFGKFG---ALDKVTTYSSRS---FAFVYFKRVEDAKAAKDAL 76
L+VGNL ++ ++ELF G K+ +++ +AF+ + E A A + L
Sbjct: 81 LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFNYAFIEYDTNEVADMALNTL 140
Query: 77 QGSDFRGNPIKIEFA 91
G IK+ +A
Sbjct: 141 NGRLVDDVEIKVNWA 155
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 146 (56.5 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 45/174 (25%), Positives = 86/174 (49%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 10 PMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERA 69
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G PI+I +++ P+ ++++ + +++ + L + F FGNI
Sbjct: 70 LDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC 129
Query: 128 KFLKDGNT----AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K + D N AFV + + A A++ +NG + ++ V +S+ R +
Sbjct: 130 KVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAE 183
Score = 105 (42.0 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 16 EAPPSSNLWVGNLSADTTDADLKELFGKFG-ALD-KVTTY---SSRSFAFVYFKRVEDAK 70
+A +N+++ N D D LKELF K+G L KV T SR F FV +++ EDA
Sbjct: 187 KAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDAN 246
Query: 71 AAKDALQGSDFRGNPI 86
A + + G++ G +
Sbjct: 247 KAVEEMNGTELNGKTV 262
Score = 104 (41.7 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 26/91 (28%), Positives = 48/91 (52%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFK-FLKDGNT---AFVEYSRLEDAAEALKNIN 154
+L++ + T+ E+L + F FG+I K L++G + FV +S E+A +A+ +N
Sbjct: 296 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMN 355
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR +G + L V + + R+ N + R
Sbjct: 356 GRIVGSKPLYVALAQRKEERKAHLTNQYMQR 386
Score = 46 (21.3 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 19/69 (27%), Positives = 27/69 (39%)
Query: 745 RPLLAEPHVQSIEQLGNHYNP---QAQSLTHHYA-----SMSSTPSHSAQMLLGNNQLQE 796
R + A + + G ++ P QAQ+ T +YA M P Q G Q
Sbjct: 391 RAMPANAIINQFQPAGGYFMPAVPQAQNRTTYYAPNQLTQMRPNPRWQQQGGRGQGGFQG 450
Query: 797 STASLSQQG 805
+SL Q G
Sbjct: 451 MPSSLRQPG 459
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 135 (52.6 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAK 70
A L+VG LS DT + L+++F K+G + +V T SR F FV F+ ++DAK
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 71 AAKDALQGSDFRGNPIKIEFARPAKPS 97
A A+ G G I+++ +P +PS
Sbjct: 62 DAMMAMNGKSVDGRQIRVD--QPLRPS 86
Score = 126 (49.4 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNI 153
L+VGG+S +++ LE+ F K+G I + +KD T FV + ++DA +A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 154 NGRQIGGEQLRVD 166
NG+ + G Q+RVD
Sbjct: 68 NGKSVDGRQIRVD 80
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 135 (52.6 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 33/81 (40%), Positives = 43/81 (53%)
Query: 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-TYS-----SRSFAFVYFKRVEDAK 70
A PSS L++G LS + LK+ F FG + +V Y SR F FV F DA
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 71 AAKDALQGSDFRGNPIKIEFA 91
+AKDA+ G G P++I FA
Sbjct: 97 SAKDAMDGKGLLGRPLRISFA 117
Score = 106 (42.4 bits), Expect = 0.00010, P = 0.00010
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---GNT---AFVEYSRLEDAA 147
A PS L++GG+S +V ++ L++ F FG + + + D G + FV+++ DA
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 148 EALKNINGRQIGGEQLRVDF 167
A ++G+ + G LR+ F
Sbjct: 97 SAKDAMDGKGLLGRPLRISF 116
>FB|FBgn0015520 [details] [associations]
symbol:nonA-l "nonA-like" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008187 "poly-pyrimidine
tract binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:U31961 GO:GO:0000398
GO:GO:0008187 InterPro:IPR012975 Pfam:PF08075 FlyBase:FBgn0015520
ProteinModelPortal:Q7JPC7 STRING:Q7JPC7 PRIDE:Q7JPC7
InParanoid:Q7JPC7 ArrayExpress:Q7JPC7 Bgee:Q7JPC7 Uniprot:Q7JPC7
Length = 642
Score = 169 (64.5 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 44/139 (31%), Positives = 74/139 (53%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD 80
+ L+VGNL++DTTD DL+E+F +G + + + ++F F+ ++A+ AK AL GS
Sbjct: 277 NRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSL 336
Query: 81 FRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGN-----T 135
+G +++ FA P+ + V ++Q VS E L + F FG IE D
Sbjct: 337 RKGRVLRVRFA----PNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGE 392
Query: 136 AFVEYSRLEDAAEALKNIN 154
VE+++ A+ L+ N
Sbjct: 393 GIVEFAKKSSASACLRLCN 411
Score = 39 (18.8 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 428 NQFQRDSKRLRVDGSMPIDDATFPSRKIDDHGLVLDQSYGLGSITGG 474
NQ R + +R +D ++K++ ++LDQ G G G
Sbjct: 556 NQLLRHEEDMRA--RQQENDLLMQAKKLN---MILDQQEGFGGSNSG 597
>POMBASE|SPCC74.09 [details] [associations]
symbol:mug24 "RNA-binding protein, rrm type" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005829 "cytosol" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPCC74.09 GO:GO:0005829 GO:GO:0007126 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 OrthoDB:EOG4X0R20 PIR:T41584 RefSeq:NP_588373.1
ProteinModelPortal:O13674 EnsemblFungi:SPCC74.09.1 GeneID:2539486
KEGG:spo:SPCC74.09 eggNOG:NOG246661 NextBio:20800648 Uniprot:O13674
Length = 654
Score = 145 (56.1 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 46/164 (28%), Positives = 77/164 (46%)
Query: 6 SKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKR 65
S FN Y+ L +GNL D ++L L G L+K+ + + + F
Sbjct: 195 SPFNSEYES--LLDFRALILGNLPVDYKISELLSLIHS-GPLEKIQSNPGKRRIIITFLD 251
Query: 66 VEDAKAAKDAL--QGSDFRGNPIKIEFARPAK-P------------SKHLWVGGISQTVS 110
DA + +G F G P+K+ FARP+ P S+++++G + +
Sbjct: 252 SADAFFFYERYHPRGFIFHGRPLKLTFARPSPLPESIQNFCSNTAASRNVFIGNLPSSYH 311
Query: 111 KEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNIN 154
++E+EE F KFG IE K L N AFV + + DA + ++ ++
Sbjct: 312 EKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
Score = 64 (27.6 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 246 FGEIERIKSYPSRNYSFVEFRSVDEARRAKEGL 278
+GEIE IK +R+ FV + ++ A +A GL
Sbjct: 523 YGEIESIKYLKNRSSGFVAYTNISNAMKAVNGL 555
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 155 (59.6 bits), Expect = 9.1e-08, Sum P(3) = 9.1e-08
Identities = 48/176 (27%), Positives = 85/176 (48%)
Query: 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDK------VTTYSSRSFAFVYFKRVEDAK 70
A P ++L+VG+L AD T+A L + F G + V T S +A++ F++ DA+
Sbjct: 7 AYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAE 66
Query: 71 AAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGI-----SQTVSKEELEEGFLKFGNIE 125
A D + +G PI+I +++ + VG I +++ + L + F FGNI
Sbjct: 67 CALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNIL 126
Query: 126 DFKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K + D N + FV + E A A++ +NG + ++ V +S+ R +
Sbjct: 127 SCKVVCDENGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAE 182
Score = 55 (24.4 bits), Expect = 9.1e-08, Sum P(3) = 9.1e-08
Identities = 22/101 (21%), Positives = 40/101 (39%)
Query: 234 MDEQMLHNAMILFGEIERI-----KSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRI 288
+D + L N FG+ + + SR + FV F + +ARRA + G+ N +
Sbjct: 202 IDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVL 261
Query: 289 TIMFSSSELAPGKDYPGSYSGTKGPRSEMFFGDQIRPSQLD 329
+ + L + + K R + + G + LD
Sbjct: 262 YVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLD 302
Score = 41 (19.5 bits), Expect = 9.1e-08, Sum P(3) = 9.1e-08
Identities = 23/105 (21%), Positives = 41/105 (39%)
Query: 396 RPSPSPGIRTSPTQGIRQPLNHAPGSWDVYDANQFQRDSKRLRVDGSMPIDDATFPSRKI 455
R P P I T+ QG + P Y+A R + R P FP++ +
Sbjct: 390 RAIPGPAIPTTYQQGSGYYMTSVPQVRSFYNAVPNLRPAPRWAFQA--PRTQGPFPAQFV 447
Query: 456 DDHGLVLDQSYGLGSITGGPASGAFVNVQGRNRLSPVASKVTAGG 500
+ S + ++ AS ++ R++ + ++ TAGG
Sbjct: 448 RQ-AVPRRPSTTISTVR--QASTQVPHINNTQRMANIGTQ-TAGG 488
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 159 (61.0 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 54/186 (29%), Positives = 87/186 (46%)
Query: 55 SRSFAFVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK-PS-------KHLWVGG 104
+R F F+ ++ + A A+ L + GN + +E+A P + P K L+V
Sbjct: 288 NRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRN 347
Query: 105 ISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164
++ TV++E LE+ F +FG +E K LKD AFV + A +A+ +NG++I GE++
Sbjct: 348 LATTVTEEILEKSFSEFGKLERVKKLKD--YAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 405
Query: 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKIL 224
+ L P ++ + AR R T + D + P GR R G
Sbjct: 406 I-VLAKPPDKKRK--ERQAARQA---SRSTAYEDYYYHPPPRMPPPMRGRGRGGRGG--- 456
Query: 225 WVGYPP 230
GYPP
Sbjct: 457 -YGYPP 461
>UNIPROTKB|Q566E4 [details] [associations]
symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
Genevestigator:Q566E4 Uniprot:Q566E4
Length = 632
Score = 159 (61.0 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 54/186 (29%), Positives = 87/186 (46%)
Query: 55 SRSFAFVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK-PS-------KHLWVGG 104
+R F F+ ++ + A A+ L + GN + +E+A P + P K L+V
Sbjct: 288 NRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRN 347
Query: 105 ISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164
++ TV++E LE+ F +FG +E K LKD AFV + A +A+ +NG++I GE++
Sbjct: 348 LATTVTEEILEKSFSEFGKLERVKKLKD--YAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 405
Query: 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKIL 224
+ L P ++ + AR R T + D + P GR R G
Sbjct: 406 I-VLAKPPDKKRK--ERQAARQA---SRSTAYEDYYYHPPPRMPPPMRGRGRGGRGG--- 456
Query: 225 WVGYPP 230
GYPP
Sbjct: 457 -YGYPP 461
>UNIPROTKB|F1P555 [details] [associations]
symbol:SFPQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016363 GO:GO:0000380 GO:GO:0042382 InterPro:IPR012975
Pfam:PF08075 GeneTree:ENSGT00390000005004 OMA:APGGHPK
EMBL:AADN02043825 EMBL:AADN02043826 IPI:IPI00574618
Ensembl:ENSGALT00000003963 ArrayExpress:F1P555 Uniprot:F1P555
Length = 647
Score = 159 (61.0 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 40/103 (38%), Positives = 54/103 (52%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR 82
L+VGNL AD TD D K LF K+G +V + F F+ + A+ AK L + R
Sbjct: 239 LFVGNLPADITDEDFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMR 298
Query: 83 GNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIE 125
G +++ FA A L V +S VS E LEE F +FG +E
Sbjct: 299 GRQLRVRFATHAAA---LSVRNLSPYVSNELLEEAFSQFGPVE 338
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 153 (58.9 bits), Expect = 9.9e-08, P = 9.9e-08
Identities = 56/192 (29%), Positives = 86/192 (44%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAK 73
+ ++VG LS DT+ DLK+ F KFG + T T SR F F+ FK ++ +
Sbjct: 44 AGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFK---ESDSVD 100
Query: 74 DALQGSDFR--GNPI--KIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129
LQ + R G I K A +P K ++VGG++ ++E++ E F FG IE +
Sbjct: 101 RVLQQKEHRLDGRQIDPKRAMAIKKEPVKKIFVGGLNPETTEEKIREYFGSFGEIETIEL 160
Query: 130 LKDGNTA------FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHD 183
D T+ F+ + E A + + + G + + +QP Q
Sbjct: 161 PTDPKTSKRRGFVFITFKE-EFAVKKILEKKYHNVCGSKCEIKI--AQPKEIYQ-QQQFG 216
Query: 184 ARDGPIIGRGTG 195
AR G GRG G
Sbjct: 217 ARGGGFGGRGRG 228
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 159 (61.0 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 54/186 (29%), Positives = 87/186 (46%)
Query: 55 SRSFAFVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK-PS-------KHLWVGG 104
+R F F+ ++ + A A+ L + GN + +E+A P + P K L+V
Sbjct: 316 NRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRN 375
Query: 105 ISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164
++ TV++E LE+ F +FG +E K LKD AFV + A +A+ +NG++I GE++
Sbjct: 376 LATTVTEEILEKSFSEFGKLERVKKLKD--YAFVHFEDRGAAVKAMNEMNGKEIEGEEIE 433
Query: 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKIL 224
+ L P ++ + AR R T + D + P GR R G
Sbjct: 434 I-VLAKPPDKKRK--ERQAARQA---SRSTAYEDYYYYPPPRMPPPIRGRGRGGRGG--- 484
Query: 225 WVGYPP 230
GYPP
Sbjct: 485 -YGYPP 489
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 156 (60.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 55/199 (27%), Positives = 88/199 (44%)
Query: 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVED 68
K ++VG LS DTT DLK+ F KFG + T T SR F FV FK E
Sbjct: 48 KNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAES 107
Query: 69 AKAA---KD-ALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNI 124
+ K+ L G +P K + + +P K ++VGG+S +E++ E F +G +
Sbjct: 108 VEKVITQKEHKLNGKVI--DPKKAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFDAYGEV 165
Query: 125 EDFKFLKDGNT------AFVEYSRLEDAAEAL-KNINGRQIGGEQLRVDFLRSQPSRREQ 177
E + + T F+ + E + + K + + +++V + Q +++Q
Sbjct: 166 ESIELPMENKTNKRRGFCFITFKEEEPVKKIMEKKYHNIGLSKCEVKVAMSKEQYQQQQQ 225
Query: 178 WPNSHDARDGPII-GRGTG 195
W R G GRG G
Sbjct: 226 W----GGRGGYTSRGRGRG 240
Score = 40 (19.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 834 YQFAAPSNSQKGYGMMQ 850
Y + SN Q GYG Q
Sbjct: 286 YGYGDYSNQQSGYGKSQ 302
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 134 (52.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 35/108 (32%), Positives = 56/108 (51%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNI 153
L+VGG+S +++ LE+ F K+G I + +KD T FV + ++DA +A+ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 154 NGRQIGGEQLRVDFL-RSQPSRREQWPNSHDARDGPIIG---RGTGFS 197
NG+ + G Q+RVD +S +R + G G RG GFS
Sbjct: 68 NGKSVDGRQIRVDQAGKSSDNRSRGYRGGSSGGRGFFRGGRGRGRGFS 115
Score = 128 (50.1 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 32/97 (32%), Positives = 51/97 (52%)
Query: 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAK 70
A L+VG LS DT + L+++F K+G + +V T SR F FV F+ ++DAK
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 71 AAKDALQGSDFRGNPIKIEFARPAKPSKHL-WVGGIS 106
A A+ G G I+++ A + ++ + GG S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSS 98
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 158 (60.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 54/186 (29%), Positives = 87/186 (46%)
Query: 55 SRSFAFVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK-PS-------KHLWVGG 104
+R F F+ ++ + A A+ L + GN + +E+A P + P K L+V
Sbjct: 250 NRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRN 309
Query: 105 ISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164
++ TV++E LE+ F +FG +E K LKD AFV + A +A+ +NG++I GE++
Sbjct: 310 LATTVTEEILEKSFSEFGKLERVKKLKD--YAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 367
Query: 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKIL 224
+ L P ++ + AR R T + D + P GR R G
Sbjct: 368 I-VLAKPPDKKRK--ERQAARQA---SRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY- 420
Query: 225 WVGYPP 230
GYPP
Sbjct: 421 --GYPP 424
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 138 (53.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIG 159
++VGG+ TV++E L + F +G + K + FV++ A +AL ++NG Q+G
Sbjct: 284 IFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLG 343
Query: 160 GEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGF 196
G+ +R+ + RS PS ++ G G G G+
Sbjct: 344 GQSIRLSWGRS-PSSKQTDQTQWGGSGGAYYGYGQGY 379
Score = 64 (27.6 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 25/82 (30%), Positives = 38/82 (46%)
Query: 23 LWVGNLSADTTDADLKELFGKF-----GA---LDKVTTYSSRSFAFVYFKRVEDAKAAKD 74
++VG+L+AD TD L+E F GA D++T S+ + FV F + A
Sbjct: 178 IFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITG-RSKGYGFVKFADESEQLRAMT 236
Query: 75 ALQGSDFRGNPIKIEFARPAKP 96
+ G P++I A KP
Sbjct: 237 EMNGVLCSTRPMRIGPAANKKP 258
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 153 (58.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 61/221 (27%), Positives = 94/221 (42%)
Query: 2 APPPSKFNRAYDD-----KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT----- 51
APP N A D K + ++VG LS DT+ DLK+ F KFG + T
Sbjct: 46 APPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP 105
Query: 52 -TYSSRSFAFVYFKRVEDAKAAKDALQGSDFR--GNPI--KIEFARPAKPSKHLWVGGIS 106
T SR F F+ FK DA + + L + R G I K A P K ++VGG++
Sbjct: 106 NTGRSRGFGFILFK---DAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPVKKIFVGGLN 162
Query: 107 QTVSKEELEEGFLKFGNIE------DFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG 160
++E++ E F +FG IE D K K F+ + E + L+ + G
Sbjct: 163 PEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK-KFHTVSG 221
Query: 161 EQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHS 201
+ + + + ++Q S + RG+G + S
Sbjct: 222 SKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQS 262
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 145 (56.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 45/174 (25%), Positives = 83/174 (47%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGAL------DKVTTYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + V T S +A++ F++ DA+ A
Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFAR--PAKPSK---HLWVGGISQTVSKEELEEGFLKFGNIEDF 127
D + +G PI+I +++ P ++++ + ++ + L + F FGNI
Sbjct: 69 LDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 128 KFLKD--GNTAF--VEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177
K D G+ F V + E A +A+ +NG + ++ V +S+ R +
Sbjct: 129 KVACDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAE 182
Score = 88 (36.0 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDA 75
+N++V NL D + L++LF +FG + V SR F FV F++ E+A+ A
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 76 LQGSDFRG 83
+ G + G
Sbjct: 251 MNGKEVSG 258
Score = 86 (35.3 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 23/91 (25%), Positives = 46/91 (50%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNIN 154
+L+V + ++ ++L + F +G I K + +G + FV +S E+A +A+ +N
Sbjct: 295 NLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 155 GRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185
GR +G + L V + + R+ N + R
Sbjct: 355 GRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Score = 62 (26.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 232 VQMDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEFRSVDEARRAKEGLQGR 281
V +DEQ L + FG++ +K S SR + FV F +EA++A + G+
Sbjct: 200 VDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGK 254
>UNIPROTKB|A3KMV6 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
Length = 633
Score = 158 (60.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 54/186 (29%), Positives = 87/186 (46%)
Query: 55 SRSFAFVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARPAK-PS-------KHLWVGG 104
+R F F+ ++ + A A+ L + GN + +E+A P + P K L+V
Sbjct: 288 NRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRN 347
Query: 105 ISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164
++ TV++E LE+ F +FG +E K LKD AFV + A +A+ +NG++I GE++
Sbjct: 348 LATTVTEEILEKSFSEFGKLERVKKLKD--YAFVHFEDRGAAVKAMDEMNGKEIEGEEIE 405
Query: 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKIL 224
+ L P ++ + AR R T + D + P GR R G
Sbjct: 406 I-VLAKPPDKKRK--ERQAARQA---SRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY- 458
Query: 225 WVGYPP 230
GYPP
Sbjct: 459 --GYPP 462
WARNING: HSPs involving 606 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 957 931 0.00092 122 3 11 23 0.45 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 856
No. of states in DFA: 617 (66 KB)
Total size of DFA: 422 KB (2201 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 89.69u 0.10s 89.79t Elapsed: 00:00:04
Total cpu time: 89.74u 0.10s 89.84t Elapsed: 00:00:04
Start: Tue May 21 16:53:39 2013 End: Tue May 21 16:53:43 2013
WARNINGS ISSUED: 2