BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002168
(957 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LPQ9|FPA_ARATH Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA
PE=2 SV=2
Length = 901
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/993 (45%), Positives = 583/993 (58%), Gaps = 169/993 (17%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGS 79
S+NLWVG+L+ +TT++DL ELFG++G +D++T YSSR FAF+Y++ VE+A AAK+ALQG+
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 80 DFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVE 139
+ G+ IKIE+ARPAKP K LWVGGI VSK++LEE F KFG IEDF+FL++ TAF++
Sbjct: 77 NLNGSQIKIEYARPAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFID 136
Query: 140 YSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDN 199
Y ++DA +A K++NG+ +GG LRVDFLRSQ ++EQW S+D R+G + N
Sbjct: 137 YYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNM---------N 186
Query: 200 HSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQM--DEQMLHNAMILFGEIERIKSYPS 257
H K +P S D PSK+LW+G+PP+ DEQ+LHNAMILFGEIER+KSYPS
Sbjct: 187 H---KPQYPHSYEDFKGDVQPSKVLWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPS 243
Query: 258 RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPGSYSGTKGPRSEM 317
RN++ VEFRS +EAR+ KEGLQGRLFN+PRI IM+S+ EL P +D YSG K R++M
Sbjct: 244 RNFALVEFRSAEEARQCKEGLQGRLFNNPRIKIMYSNDELPPEQDDTSFYSGMKRSRTDM 303
Query: 318 FFGDQIRPSQLDMLGPNQSMQPNNFAGHLQPADIRGPSMPMRSIGAHGGHETLLSGPDFK 377
F D PS F I G P+R G +E +G ++
Sbjct: 304 FNND---PS---------------FVSSPHSTGIPGSMRPLR-----GTNERSYNGAEYN 340
Query: 378 DFHSMQDPNAKNLDPNWRRPS-------PSP---GIRTSPTQGIRQPLNHAPGSWDVYDA 427
D +PNWRRPS PSP GI SP QG R+P+ P SW+ YD
Sbjct: 341 D--------VVGKEPNWRRPSANGTGILPSPTGPGILPSPAQGTRRPMRSNPDSWEGYDP 392
Query: 428 NQFQRDSKRLRVDGSMPIDDATFPSRKIDDHGLVLDQSYGLGSITGGPASGAFVNVQGRN 487
Q R+SKR R DGS+ F +D+ +S+G GS+ P
Sbjct: 393 AQLVRESKRTRRDGSV----DGFTPMGVDE------RSFGRGSVAARPI----------- 431
Query: 488 RLSPVASKVTAGGFGRNPIDSDFIWRGIIAKGGTPVCRARCVPFGKGIESELPEVVNCSA 547
R P DSD IWRG+IAKGGTPVC ARCVP GKGIE++LPEVVNCSA
Sbjct: 432 ---------------RGPPDSDHIWRGMIAKGGTPVCCARCVPMGKGIETKLPEVVNCSA 476
Query: 548 RTGLDMLAKHYAEAIGFDIVFFLPDSEDDFASYTEFLRYLGSKNRAGVAKFDDGTTLFLV 607
RT L+MLAKHYA AIG +IVFF+PD E+DFASYTEFLRYL SK+RAGVAK DDGTTLFLV
Sbjct: 477 RTDLNMLAKHYAVAIGCEIVFFVPDREEDFASYTEFLRYLSSKDRAGVAKLDDGTTLFLV 536
Query: 608 PPSDFLSKVLKVVGPERLYGVVLKLPQQAMV------------PPQTVDKQNIPPPHAEY 655
PPSDFL+ VL+V ERLYGVVLKLP A+ P +D+ P +A +
Sbjct: 537 PPSDFLTDVLQVTRQERLYGVVLKLPPPAVPVTASYRQESQSNPLHYMDQARDSPANASH 596
Query: 656 GLTRPKEEHVLPVDYNRFSHDDSKVQSKMHFPHASEPLIAHSSSMDYGSNNAAAISQAGV 715
L P+E ++ R + + SK P SEPL NNAA QAGV
Sbjct: 597 SLYPPRENYI------RGAPEHLTAASK---PSVSEPLRI--------PNNAAP--QAGV 637
Query: 716 KLTPELIATLTSLIPATKSAEVAPGS----SSARPLLAEPHV------------------ 753
LTPEL+ATL S++PAT S AP S S +++ H
Sbjct: 638 SLTPELLATLASILPAT-SQPAAPESHQPMSGPSTVVSTAHQSNGLYNGEAPSQAWKRGP 696
Query: 754 --------QSIEQLGNHYNPQAQ--SLTHHYASMSSTPSHSAQMLLGNNQLQESTASLSQ 803
QS +Q GN Y P Q Y S+ P++++ M+ GN Q Q + ++ Q
Sbjct: 697 QTVHDASNQSFQQYGNQYTPAGQLPPPPSRYPPASNNPNYTSGMVHGNMQYQSQSVNMPQ 756
Query: 804 QGMVYSRPLPNFSIAPQAAPV-AVSPPVHQQYQFAAPSNSQKGYGMMQGTEASTLYGSSV 862
+ + P N+S+ Q + VS P+ QQYQ A S + YG + + + +G +
Sbjct: 757 LSPLPNMPHNNYSMYTQGSSNHPVSQPMVQQYQPEA-SMPNQNYGPIPSYQQANFHGVTT 815
Query: 863 FQQPNNPTAVSNQVNLSQPQNVMTVSVDKVNLEHPNHVQQLQSVLSGAGQGTSDGEVDKN 922
Q N +N SQ Q M DK NLE N +LQ ++SG GQGT+DGEVDKN
Sbjct: 816 NQAQN--------LNPSQFQAAMQPPADKANLEPQNQALRLQPMISGDGQGTTDGEVDKN 867
Query: 923 QRYQSTLQFAANLLLQIQQQQQTNS---PAGRG 952
QRYQSTLQFAANLLLQIQQ+QQ S PAG+G
Sbjct: 868 QRYQSTLQFAANLLLQIQQKQQQQSSGTPAGQG 900
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 39/191 (20%)
Query: 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKD 74
+ A P +LWVG + + + DL+E F KFG ++ R AF+ + ++DA AK
Sbjct: 89 RPAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQAK- 147
Query: 75 ALQGSDFRGNPIKIEFAR---PAK--------------------------------PSKH 99
++ G G+ ++++F R P K PSK
Sbjct: 148 SMNGKPMGGSFLRVDFLRSQAPKKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKV 207
Query: 100 LWVG---GISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGR 156
LW+G +Q ++ L + FG IE K N A VE+ E+A + + + GR
Sbjct: 208 LWIGFPPTATQCNDEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQCKEGLQGR 267
Query: 157 QIGGEQLRVDF 167
++++ +
Sbjct: 268 LFNNPRIKIMY 278
>sp|Q6PHZ5|RB15B_MOUSE Putative RNA-binding protein 15B OS=Mus musculus GN=Rbm15b PE=1
SV=2
Length = 887
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 10/169 (5%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY-----SSRSFAFVYFKRVE 67
DD+ A + NL++GNL ++ +L+ F K+G +++V ++AF+ F+ ++
Sbjct: 327 DDQRA--TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLD 384
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
A AK A+ G NPIKI + + A P+ LWVGG+ S L F +FG+I
Sbjct: 385 MAHRAKVAMSGRVIGRNPIKIGYGK-ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI 443
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSR 174
+K + A+++Y L+ A A + G +GG +LRVDF +++ +R
Sbjct: 444 DHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETR 492
>sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B OS=Homo sapiens GN=RBM15B PE=1
SV=3
Length = 890
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 10/169 (5%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY-----SSRSFAFVYFKRVE 67
DD+ A + NL++GNL ++ +L+ F K+G +++V ++AF+ F+ ++
Sbjct: 331 DDQRA--TRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLD 388
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
A AK A+ G NPIKI + + A P+ LWVGG+ S L F +FG+I
Sbjct: 389 MAHRAKVAMSGRVIGRNPIKIGYGK-ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI 447
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSR 174
+K + A+++Y L+ A A + G +GG +LRVDF +++ +R
Sbjct: 448 DHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETR 496
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 124/277 (44%), Gaps = 44/277 (15%)
Query: 23 LWVGNLSADTTDADLKELFGKFG---ALDKVTTYSSRS-FAFVYFKRVEDAKAAKDALQG 78
L+VGNLS D T+ + +LF + G + +T ++S + FV F DA AA A+ G
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG 70
Query: 79 SDFRGNPIKIEFARPAKPSK-------HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLK 131
G +K+ +A K H++VG +S ++ E+++ F FG I D + +K
Sbjct: 71 RKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVK 130
Query: 132 DGNTA------FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPS--RREQWPNSHD 183
D T FV + DA A+ ++ G+ +GG Q+R ++ +P + Q N+
Sbjct: 131 DMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQ 190
Query: 184 ARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAM 243
R ++ N+ P + ++ G S + +Q++
Sbjct: 191 LRFEDVV------------------------NQSSPKNCTVYCGGIAS-GLTDQLMRQTF 225
Query: 244 ILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQG 280
FG+I I+ +P + YSFV F + + A A + G
Sbjct: 226 SPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 262
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 31/182 (17%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGALDK------VTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++VG+LS + T D+K F FG + + T S+ + FV F DA+ A
Sbjct: 98 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 157
Query: 76 LQGSDFRGNPIKIEFA--RPAKP-------SKHL----------------WVGGISQTVS 110
+ G G I+ +A +P P +K L + GGI+ ++
Sbjct: 158 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 217
Query: 111 KEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170
+ + + F FG I + + + +FV +S E AA A+ ++NG I G ++ + +
Sbjct: 218 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 277
Query: 171 QP 172
P
Sbjct: 278 SP 279
Score = 41.6 bits (96), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 42/79 (53%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAK 73
++ +P + ++ G +++ TD +++ F FG + ++ + + ++FV F E A A
Sbjct: 198 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 257
Query: 74 DALQGSDFRGNPIKIEFAR 92
++ G+ G+ +K + +
Sbjct: 258 VSVNGTTIEGHVVKCYWGK 276
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 4/151 (2%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGAL---DKVTTYSSRSFAFVYFKRVEDAKAAKDAL 76
+ L++GNL TT DL+ +F +FG + D +AF+ + + A +
Sbjct: 438 TRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKM 497
Query: 77 QGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA 136
G N +K+ F + + P+ +W+ G+S VS + L F ++G + F + A
Sbjct: 498 DGEYLGNNRLKLGFGK-SMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMA 556
Query: 137 FVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167
V YS +EDA A+K GR+IGG +++VDF
Sbjct: 557 LVLYSEIEDAQAAVKETKGRKIGGNKIKVDF 587
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 42/228 (18%)
Query: 4 PPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKE-LFGKFGALDKVTTY-----SSRS 57
P S+ + + E S + V NL + D LK+ LF +F KVT+ S
Sbjct: 319 PTSQLLSSLEKDEPRKSFGIKVQNLPVRSIDTSLKDGLFHEFKKFGKVTSVQIHGASEER 378
Query: 58 FAFVYFKRVEDAKAAKDALQGSDFRGNPIKI------------EFARP---------AKP 96
+ V+F++ ED + A A +G F G I++ EF RP K
Sbjct: 379 YGLVFFRQQEDQEKALTASKGKLFFGMQIEVTAWVGPETESENEF-RPLDERIDEFHPKA 437
Query: 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT---AFVEYSRLEDAAEALKNI 153
++ L++G + +T + +L F +FG I D K AF++Y + +A+K +
Sbjct: 438 TRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKM 497
Query: 154 NGRQIGGEQLRVDFLRSQPSR-----------REQWPNSHDARDGPII 190
+G +G +L++ F +S P+ +Q+ H R GP++
Sbjct: 498 DGEYLGNNRLKLGFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVV 545
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQG 78
P++ +W+ LS++ +D L F ++G + KV + A V + +EDA+AA +G
Sbjct: 516 PTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYSEIEDAQAAVKETKG 575
Query: 79 SDFRGNPIKIEFA 91
GN IK++FA
Sbjct: 576 RKIGGNKIKVDFA 588
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL-----KDGNTAFVEYSRLEDAAEALK 151
++HLWVG + + V +E++ E F ++G +E K L + G AFV++ ++ A +A
Sbjct: 5 TRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHN 64
Query: 152 NINGRQIGGEQLRVDF 167
++N ++G LR D+
Sbjct: 65 SVN--KMGDRDLRTDY 78
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 123/305 (40%), Gaps = 55/305 (18%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVT----TYSSRSFAFVYFKRVEDAKAAKDALQG 78
L+VGNLS D T+A + +LF + G T + + FV F A AA A+ G
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68
Query: 79 SDFRGNPIKIEFARPAKPSK------------------HLWVGGISQTVSKEELEEGFLK 120
G +K+ +A K H++VG +S ++ E+++ F
Sbjct: 69 RKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAP 128
Query: 121 FGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174
FG I D + +KD T FV + DA A++ + G+ +GG Q+R ++ +P
Sbjct: 129 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 188
Query: 175 REQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGR--NRDGPPSKILWVGYPPSV 232
+ S Y+ + Q S N+ P + ++ G S
Sbjct: 189 PK------------------------STYESNTKQLSYDEVVNQSSPSNCTVYCGGVTS- 223
Query: 233 QMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 292
+ EQ++ FG+I I+ +P + YSFV F S + A A + G + +
Sbjct: 224 GLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYW 283
Query: 293 SSSEL 297
L
Sbjct: 284 GKETL 288
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 31/175 (17%)
Query: 22 NLWVGNLSADTTDADLKELFGKFG------ALDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++VG+LS + T D+K F FG + + T S+ + FV F DA+ A
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 76 LQGSDFRGNPIKIEFAR---PAKPSKH----------------------LWVGGISQTVS 110
+ G G I+ +A PA S + ++ GG++ ++
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLT 226
Query: 111 KEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165
++ + + F FG I + + D +FV ++ E AA A+ ++NG I G ++
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKC 281
Score = 40.8 bits (94), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 17/85 (20%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 11 AYDD---KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVE 67
+YD+ + +P + ++ G +++ T+ +++ F FG + ++ + + ++FV F E
Sbjct: 201 SYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHE 260
Query: 68 DAKAAKDALQGSDFRGNPIKIEFAR 92
A A ++ G+ G+ +K + +
Sbjct: 261 SAAHAIVSVNGTTIEGHVVKCYWGK 285
>sp|Q96T37|RBM15_HUMAN Putative RNA-binding protein 15 OS=Homo sapiens GN=RBM15 PE=1 SV=2
Length = 977
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 93/173 (53%), Gaps = 10/173 (5%)
Query: 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKV-----TTYSSRSFAFVYFKRVE 67
DD+ A + L++GNL T++DL+ F +FG + +V + + ++ F+ F+ ++
Sbjct: 368 DDQRA--NRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFENLD 425
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
+ AK A+ G NPIKI + + A P+ LWVGG+ V L F +FG I
Sbjct: 426 MSHRAKLAMSGKIIIRNPIKIGYGK-ATPTTRLWVGGLGPWVPLAALAREFDRFGTIRTI 484
Query: 128 KFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQW 178
+ K + A+++Y L+ A A ++ G +GG +LRVDF ++ ++Q+
Sbjct: 485 DYRKGDSWAYIQYESLDAAHAAWTHMRGFPLGGPDRRLRVDFADTEHRYQQQY 537
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 46/320 (14%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAI 97
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 131 KDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDF--------------- 167
D T F+ + + +A EA+K +NG++ G E + V F
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ 217
Query: 168 LRSQPSRREQWPNSHDA---RDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSK-- 222
L P+RR P + A R ++ G S S G N G P
Sbjct: 218 LYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGW 277
Query: 223 ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKE 276
++V Y + DE +L FG + +K + + + FV + DEA A
Sbjct: 278 CIFV-YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIA 336
Query: 277 GLQGRLFNDPRITIMFSSSE 296
L G D + + F +++
Sbjct: 337 SLNGYRLGDRVLQVSFKTNK 356
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 123/305 (40%), Gaps = 55/305 (18%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVT----TYSSRSFAFVYFKRVEDAKAAKDALQG 78
L+VGNLS D T+A + +LF + G T + + FV F A AA A+ G
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNG 68
Query: 79 SDFRGNPIKIEFARPAKPSK------------------HLWVGGISQTVSKEELEEGFLK 120
G +K+ +A K H++VG +S ++ E+++ F
Sbjct: 69 RKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAP 128
Query: 121 FGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174
FG I D + +KD T FV + DA A++ + G+ +GG Q+R ++ +P
Sbjct: 129 FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 188
Query: 175 REQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGR--NRDGPPSKILWVGYPPSV 232
+ S Y+ + Q S ++ P + ++ G S
Sbjct: 189 PK------------------------STYESNTKQLSYDEVVSQSSPNNCTVYCGGVTS- 223
Query: 233 QMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 292
+ EQ++ FG+I I+ +P + YSFV F S + A A + G + +
Sbjct: 224 GLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYW 283
Query: 293 SSSEL 297
L
Sbjct: 284 GKETL 288
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 31/175 (17%)
Query: 22 NLWVGNLSADTTDADLKELFGKFG------ALDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++VG+LS + T D+K F FG + + T S+ + FV F DA+ A
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 76 LQGSDFRGNPIKIEFAR---PAKPSKH----------------------LWVGGISQTVS 110
+ G G I+ +A PA S + ++ GG++ ++
Sbjct: 167 MGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLT 226
Query: 111 KEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165
++ + + F FG I + + D +FV +S E AA A+ ++NG I G ++
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKC 281
Score = 40.4 bits (93), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/85 (20%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 11 AYDD---KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVE 67
+YD+ + +P + ++ G +++ T+ +++ F FG + ++ + + ++FV F E
Sbjct: 201 SYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHE 260
Query: 68 DAKAAKDALQGSDFRGNPIKIEFAR 92
A A ++ G+ G+ +K + +
Sbjct: 261 SAAHAIVSVNGTTIEGHVVKCYWGK 285
>sp|Q91903|ELAV2_XENLA ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2
Length = 389
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 142/337 (42%), Gaps = 51/337 (15%)
Query: 5 PSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRS 57
P + N D K +NL V L + T +LK LFG G + DK+T S
Sbjct: 55 PVESNNTEDSK-----TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLG 109
Query: 58 FAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEEL 114
+ FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T++++EL
Sbjct: 110 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 169
Query: 115 EEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVD 166
E+ F ++G I + L D T F+ + + +A EA+K +NG++ G E + V
Sbjct: 170 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVK 229
Query: 167 F---------------LRSQPSRREQWPNSHDAR----DGPIIGRGTGFSDNHSAYKRSH 207
F L P+RR P + A+ D + G S
Sbjct: 230 FANNPSQKVNHTILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGGIKSRFSPMAIDG 289
Query: 208 PQSSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRN 259
S G N G ++V Y + DE +L FG + +K + +
Sbjct: 290 MTSLAGINFPGHAGTGWCIFV-YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKG 348
Query: 260 YSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
+ FV + DEA A L G D + + F +S+
Sbjct: 349 FGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSK 385
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 146/322 (45%), Gaps = 51/322 (15%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAI 97
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 131 KDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRRE------ 176
D T F+ + + +A EA+K +NG++ G E + V F + PS++
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF-ANNPSQKTNQAILS 216
Query: 177 ---QWPNSHDARDGPIIGRGTGFS-DN--HSAY--KRSHPQ------SSVGRNRDGPPSK 222
Q PN GP+ + F DN + AY KR P S G N G P
Sbjct: 217 QLYQSPNRR--YPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGT 274
Query: 223 --ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRA 274
++V Y + DE +L FG + +K + + + FV + DEA A
Sbjct: 275 GWCIFV-YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333
Query: 275 KEGLQGRLFNDPRITIMFSSSE 296
L G D + + F +++
Sbjct: 334 IASLNGYRLGDRVLQVSFKTNK 355
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 146/322 (45%), Gaps = 51/322 (15%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAI 97
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 131 KDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRRE------ 176
D T F+ + + +A EA+K +NG++ G E + V F + PS++
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF-ANNPSQKTNQAILS 216
Query: 177 ---QWPNSHDARDGPIIGRGTGFS-DN--HSAY--KRSHPQ------SSVGRNRDGPPSK 222
Q PN GP+ + F DN + AY KR P S G N G P
Sbjct: 217 QLYQSPNRR--YPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGT 274
Query: 223 --ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRA 274
++V Y + DE +L FG + +K + + + FV + DEA A
Sbjct: 275 GWCIFV-YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333
Query: 275 KEGLQGRLFNDPRITIMFSSSE 296
L G D + + F +++
Sbjct: 334 IASLNGYRLGDRVLQVSFKTNK 355
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 4/151 (2%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSR---SFAFVYFKRVEDAKAAKDAL 76
+ L++GNL TT DL+ +F +FG + + +AF+ + + A +
Sbjct: 437 TRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKM 496
Query: 77 QGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTA 136
G N +K+ F + + P+ +W+ G+S VS + L F ++G + F + A
Sbjct: 497 DGEYLGNNRLKLGFGK-SMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMA 555
Query: 137 FVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167
V Y+ +E A A+K GR+IGG +++VDF
Sbjct: 556 LVLYNEIEYAQAAVKETKGRKIGGNKIKVDF 586
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 42/228 (18%)
Query: 4 PPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKE-LFGKFGALDKVTTY-----SSRS 57
P S+ + + E S + V NL +TD LK+ LF +F KVT+ S
Sbjct: 318 PTSQLLSSLEKDEPRKSFGIKVQNLPVRSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEER 377
Query: 58 FAFVYFKRVEDAKAAKDALQGSDFRGNPIKI------------EFARP---------AKP 96
+ V+F++ ED + A A +G F G I++ EF RP K
Sbjct: 378 YGLVFFRQQEDQEKALTASKGKLFFGMQIEVTAWIGPETESENEF-RPLDERIDEFHPKA 436
Query: 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT---AFVEYSRLEDAAEALKNI 153
++ L++G + +T + +L F +FG I D K AF++Y + +A+K +
Sbjct: 437 TRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIKKM 496
Query: 154 NGRQIGGEQLRVDFLRSQPSR-----------REQWPNSHDARDGPII 190
+G +G +L++ F +S P+ +Q+ H R GP++
Sbjct: 497 DGEYLGNNRLKLGFGKSMPTNCVWLDGLSSNVSDQYLTRHFCRYGPVV 544
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL-----KDGNTAFVEYSRLEDAAEALK 151
++HLWVG + + V +E++ E F ++G +E K L + G AFV++ ++ A +A
Sbjct: 5 TRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKAHN 64
Query: 152 NINGRQIGGEQLRVDF 167
++N ++G LR D+
Sbjct: 65 SVN--KMGDRDLRTDY 78
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQG 78
P++ +W+ LS++ +D L F ++G + KV + A V + +E A+AA +G
Sbjct: 515 PTNCVWLDGLSSNVSDQYLTRHFCRYGPVVKVVFDRLKGMALVLYNEIEYAQAAVKETKG 574
Query: 79 SDFRGNPIKIEFA 91
GN IK++FA
Sbjct: 575 RKIGGNKIKVDFA 587
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 120/294 (40%), Gaps = 61/294 (20%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTY---------------------SSRSFAFV 61
L+VGNLS D T+ + +LF + G S+ + FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 62 YFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPSK-------HLWVGGISQTVSKEEL 114
F DA AA A+ G G +K+ +A K H++VG +S ++ E++
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 130
Query: 115 EEGFLKFGNIEDFKFLKDGNTA------FVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168
+ F FG I D + +KD T FV + DA A+ ++ G+ +GG Q+R ++
Sbjct: 131 KSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
Query: 169 RSQPS--RREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWV 226
+P + Q N+ R ++ N+ P + ++
Sbjct: 191 TRKPPAPKSTQETNTKQLRFEDVV------------------------NQSSPKNCTVYC 226
Query: 227 GYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQG 280
G S + +Q++ FG+I I+ +P + YSFV F + + A A + G
Sbjct: 227 GGIAS-GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 31/182 (17%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGALDK------VTTYSSRSFAFVYFKRVEDAKAAKDA 75
+++VG+LS + T D+K F FG + + T S+ + FV F DA+ A
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 76 LQGSDFRGNPIKIEFA--RPAKP-------SKHL----------------WVGGISQTVS 110
+ G G I+ +A +P P +K L + GGI+ ++
Sbjct: 175 MGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 111 KEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170
+ + + F FG I + + + +FV +S E AA A+ ++NG I G ++ + +
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 294
Query: 171 QP 172
P
Sbjct: 295 SP 296
Score = 41.6 bits (96), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/79 (20%), Positives = 42/79 (53%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAK 73
++ +P + ++ G +++ TD +++ F FG + ++ + + ++FV F E A A
Sbjct: 215 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAI 274
Query: 74 DALQGSDFRGNPIKIEFAR 92
++ G+ G+ +K + +
Sbjct: 275 VSVNGTTIEGHVVKCYWGK 293
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 146/352 (41%), Gaps = 63/352 (17%)
Query: 2 APPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYS 54
P P + A DD + +NL V L + T + + LFG G + DK+T
Sbjct: 24 CPSPMQTGAATDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-Q 78
Query: 55 SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSK 111
S + FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T+++
Sbjct: 79 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQ 138
Query: 112 EELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQL 163
+ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 139 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 198
Query: 164 RVDF---------------LRSQPSRREQWPNSHDA---RDGPIIGRGTGFSDNHS---- 201
V F L P+RR P H A R ++ G S
Sbjct: 199 TVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSGPVP 258
Query: 202 ---AYKRSHP------QSSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIE 250
R P S VG N G ++V Y S DE +L FG +
Sbjct: 259 PSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFV-YNLSPDSDESVLWQLFGPFGAVN 317
Query: 251 RIK------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
+K + + + FV + DEA A L G D + + F +++
Sbjct: 318 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 369
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 30/195 (15%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LKE+FGK+G V + S+ F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRGNPI-----------KIEFARPAKPSK----------HLWVGGISQTVSKEEL 114
+ G D G + + E R + K +L+V + + E L
Sbjct: 251 MNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 115 EEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170
+ FL FG I K + +G + FV +S E+A +A+ +NGR + + L V +
Sbjct: 311 RKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 171 QPSRREQWPNSHDAR 185
+ R+ N + R
Sbjct: 371 KEERQAHLTNQYMQR 385
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 17/172 (9%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFARPAKPS------KHLWVGGISQTVSKEELEEGFLKFGNIED 126
D + +G P++I +++ PS ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGRPVRIMWSQ-RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 127 FKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174
K + D N + FV + E A A+ +NG + ++ V +S+ R
Sbjct: 128 CKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKER 179
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 109/285 (38%), Gaps = 51/285 (17%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGALDKVTTYS----SRSFAFVYFKRVEDAKAAKDALQ 77
N+++ NL + L + F FG + S+ + FV+F+ E A+ A D +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMN 159
Query: 78 GSDFRGNPIKI-----------EFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIED 126
G + + E AK ++++ ++ E L+E F K+G
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALS 219
Query: 127 FKFLKDGNT-----AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNS 181
K + D N FV + R EDA +A+ +NG+ + G+ + V + + R+ +
Sbjct: 220 VKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRK 279
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHN 241
+ I R G + V DG +D++ L
Sbjct: 280 FEQMKQDRITRYQGVN------------LYVKNLDDG---------------IDDERLRK 312
Query: 242 AMILFGEIERIKSY----PSRNYSFVEFRSVDEARRAKEGLQGRL 282
+ FG I K S+ + FV F S +EA +A + GR+
Sbjct: 313 EFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 77/208 (37%), Gaps = 53/208 (25%)
Query: 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDA 146
P+ P L+VG + Q V++ L E F G I + +D T A+V + + DA
Sbjct: 6 PSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 147 AEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRS 206
AL +N I G +R+ + + PS R+ G G F N
Sbjct: 66 ERALDTMNFDVIKGRPVRIMWSQRDPSLRKS-------------GVGNIFIKNLDK---- 108
Query: 207 HPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP----SRNYSF 262
+D + L++ FG I K S+ Y F
Sbjct: 109 --------------------------SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 263 VEFRSVDEARRAKEGLQGRLFNDPRITI 290
V F + + A RA + + G L ND ++ +
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFV 170
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 140/309 (45%), Gaps = 37/309 (11%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAI 125
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 126 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 185
Query: 131 KDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRR------E 176
D T F+ + + +A EA+K +NG++ G E + V F + PS++
Sbjct: 186 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF-ANNPSQKVNHTILS 244
Query: 177 QWPNSHDAR-DGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSK--ILWVGYPPSVQ 233
Q S + R GP+ + FS S S G N G ++V Y +
Sbjct: 245 QLYQSPNRRYPGPLAQQAQRFS-RFSPMTIDGMTSLAGINFPGHAGTGWCIFV-YNLAPD 302
Query: 234 MDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPR 287
DE +L FG + +K + + + FV + DEA A L G D
Sbjct: 303 ADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 362
Query: 288 ITIMFSSSE 296
+ + F +S+
Sbjct: 363 LQVSFKTSK 371
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 146/352 (41%), Gaps = 63/352 (17%)
Query: 2 APPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYS 54
P P + A DD + +NL V L + T + + LFG G + DK+T
Sbjct: 36 CPSPMQTGAATDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-Q 90
Query: 55 SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSK 111
S + FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T+++
Sbjct: 91 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQ 150
Query: 112 EELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQL 163
+ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 151 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 164 RVDF---------------LRSQPSRREQWPNSHDA---RDGPIIGRGTGFSDNHS---- 201
V F L P+RR P H A R ++ G S
Sbjct: 211 TVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSGPVP 270
Query: 202 ---AYKRSHP------QSSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIE 250
R P S VG N G ++V Y S DE +L FG +
Sbjct: 271 PSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFV-YNLSPDSDESVLWQLFGPFGAVN 329
Query: 251 RIK------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
+K + + + FV + DEA A L G D + + F +++
Sbjct: 330 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 381
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 30/195 (15%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LKE FG++GA V + SR F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDD 250
Query: 76 LQGSDFRGNPI-----------KIEFARPAKPSK----------HLWVGGISQTVSKEEL 114
+ G D G I + E R + K +L+V + + E L
Sbjct: 251 MNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 115 EEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170
+ F FG+I K + +G + FV +S E+A +A+ +NGR + + L V +
Sbjct: 311 RKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 171 QPSRREQWPNSHDAR 185
+ R+ N + R
Sbjct: 371 KEERQAHLTNQYMQR 385
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 84/172 (48%), Gaps = 17/172 (9%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFARPAKPS------KHLWVGGISQTVSKEELEEGFLKFGNIED 126
D + +G P++I +++ PS ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ-RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 127 FKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174
K + D N + FV + E A A+ +NG + ++ V +S+ R
Sbjct: 128 CKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKER 179
Score = 40.0 bits (92), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 77/208 (37%), Gaps = 53/208 (25%)
Query: 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDA 146
P+ P L+VG + V++ L E F G I + +D T A+V + + DA
Sbjct: 6 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 147 AEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRS 206
AL +N D ++ +P R W RD + G G
Sbjct: 66 ERALDTMN----------FDVIKGKPVR-IMW----SQRDPSLRKSGVG----------- 99
Query: 207 HPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP----SRNYSF 262
+ +N D +D + L++ FG I K S+ Y F
Sbjct: 100 ---NIFIKNLDK--------------SIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 263 VEFRSVDEARRAKEGLQGRLFNDPRITI 290
V F + + A RA + + G L ND ++ +
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFV 170
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 103/241 (42%), Gaps = 46/241 (19%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDAL 76
N+++ N D D LK+LFGKFG V + S+ F FV F+R EDA+ A D +
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 77 QGSDFRGNPIKI-----------EFARPAKPSK----------HLWVGGISQTVSKEELE 115
G + G I + E R + K +L+V + + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLR 311
Query: 116 EGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171
+ F FG I K + +G + FV +S E+A +A+ +NGR + + L V + +
Sbjct: 312 KAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Query: 172 PSRREQWPNSHDARDGPIIG----RG--TGF-------SDNHSAYKRSHPQSSVGRNRDG 218
R+ N + R + R +G+ + NH+AY +P S + R R
Sbjct: 372 EERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAY---YPPSQIARLRPS 428
Query: 219 P 219
P
Sbjct: 429 P 429
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 134/289 (46%), Gaps = 51/289 (17%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKA 71
P+++L+VG+L D T+A L E F G + D +T+ SS ++A+V F+ +DA+
Sbjct: 9 PTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSS-NYAYVNFQHTKDAEH 67
Query: 72 AKDALQGSDFRGNPIKIEFARPAKPS------KHLWVGGISQTVSKEELEEGFLKFGNIE 125
A D + +G P++I +++ PS +++V + ++++ + L + FGNI
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ-RDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNIL 126
Query: 126 DFKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNS 181
+ D N + FV + E A A+K +NG + G ++ F+ SR+E
Sbjct: 127 SCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKV---FVGQFKSRKE----- 178
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHN 241
R+ + R F + + + G + D K L+ + P++ +
Sbjct: 179 ---REAELGARAKEFPNVYI--------KNFGEDMDDERLKDLFGKFGPALSV------- 220
Query: 242 AMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI 290
++ +S S+ + FV F ++A++A + + G+ N +I +
Sbjct: 221 ------KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 107/285 (37%), Gaps = 51/285 (17%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGALDKVTTYS----SRSFAFVYFKRVEDAKAAKDALQ 77
N++V NL + L + FG + S+ + FV+F+ E A+ A +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMN 159
Query: 78 GSDFRGNPIKI-----------EFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIED 126
G G + + E AK ++++ + + E L++ F KFG
Sbjct: 160 GMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 127 FKFLKDGNT-----AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNS 181
K + D + FV + R EDA +A+ +NG+++ G+Q+
Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI------------------ 261
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHN 241
+GR + + KR+ Q R + + D++ L
Sbjct: 262 -------YVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGI--DDERLRK 312
Query: 242 AMILFGEIERIKSY----PSRNYSFVEFRSVDEARRAKEGLQGRL 282
A FG I K S+ + FV F S +EA +A + GR+
Sbjct: 313 AFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 30/195 (15%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LKELFGKFG V + S+ F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRGNPIKI-----------EFARPAKPSK----------HLWVGGISQTVSKEEL 114
+ G + G I + E R + K +L+V + + E L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 115 EEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170
+ F FG I K + +G + FV +S E+A +A+ +NGR + + L V +
Sbjct: 311 RKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 171 QPSRREQWPNSHDAR 185
+ R+ N + R
Sbjct: 371 KEERQAHLTNQYMQR 385
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 130/288 (45%), Gaps = 49/288 (17%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFARPAKPS------KHLWVGGISQTVSKEELEEGFLKFGNIED 126
D + +G P++I +++ PS ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ-RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 127 FKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSH 182
K + D N + FV + E A A++ +NG + ++ V + SR+E
Sbjct: 128 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK---SRKE------ 178
Query: 183 DARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNA 242
R+ + R F++ + + G + D K L+ + P++ +
Sbjct: 179 --REAELGARAKEFTNVYI--------KNFGEDMDDERLKELFGKFGPALSV-------- 220
Query: 243 MILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI 290
++ +S S+ + FV F ++A++A + + G+ N +I +
Sbjct: 221 -----KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 110/285 (38%), Gaps = 51/285 (17%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGALDKVTTYS----SRSFAFVYFKRVEDAKAAKDALQ 77
N+++ NL + L + F FG + S+ + FV+F+ E A+ A + +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 78 GSDFRGNPIKI-----------EFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIED 126
G + + E AK ++++ + + E L+E F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS 219
Query: 127 FKFLKDGNT-----AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNS 181
K + D + FV + R EDA +A+ +NG+++ G+Q+ V + + R+ +
Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHN 241
+ I R G + V DG +D++ L
Sbjct: 280 FEQMKQDRITRYQGVN------------LYVKNLDDG---------------IDDERLRK 312
Query: 242 AMILFGEIERIKSY----PSRNYSFVEFRSVDEARRAKEGLQGRL 282
FG I K S+ + FV F S +EA +A + GR+
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 145/352 (41%), Gaps = 63/352 (17%)
Query: 2 APPPSKFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYS 54
P P + DD + +NL V L + T + + LFG G + DK+T
Sbjct: 31 CPSPMQTGATTDDSK----TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-Q 85
Query: 55 SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSK 111
S + FV + +DA+ A + L G + IK+ +ARP+ S +L+V G+ +T+++
Sbjct: 86 SLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQ 145
Query: 112 EELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQL 163
+ELE+ F ++G I + L D T F+ + + +A EA+K +NG++ G E +
Sbjct: 146 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 164 RVDF---------------LRSQPSRREQWPNSHDA---RDGPIIGRGTGFSDNHS---- 201
V F L P+RR P H A R ++ G S
Sbjct: 206 TVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSGPVP 265
Query: 202 ---AYKRSHP------QSSVGRNRDGPPSK--ILWVGYPPSVQMDEQMLHNAMILFGEIE 250
R P S VG N G ++V Y S DE +L FG +
Sbjct: 266 PSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFV-YNLSPDSDESVLWQLFGPFGAVN 324
Query: 251 RIK------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
+K + + + FV + DEA A L G D + + F +++
Sbjct: 325 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 376
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 86/195 (44%), Gaps = 30/195 (15%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LKELFGKFG V + S+ F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRGNPIKI-----------EFARPAKPSK----------HLWVGGISQTVSKEEL 114
+ G + G I + E R + K +L+V + + E L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 115 EEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170
+ F FG I K + +G + FV +S E+A +A+ +NGR + + L V +
Sbjct: 311 RKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 171 QPSRREQWPNSHDAR 185
+ R+ N + R
Sbjct: 371 KEERQAHLTNQYMQR 385
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 142/327 (43%), Gaps = 49/327 (14%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFARPAKPS------KHLWVGGISQTVSKEELEEGFLKFGNIED 126
D + +G P++I +++ PS ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ-RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 127 FKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSH 182
K + D N + FV + E A A++ +NG + ++ V + SR+E
Sbjct: 128 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK---SRKE------ 178
Query: 183 DARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNA 242
R+ + R F++ + + G + D K L+ + P++ +
Sbjct: 179 --REAELGARAKEFTNVYI--------KNFGEDMDDERLKELFGKFGPALSV-------- 220
Query: 243 MILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKD 302
++ +S S+ + FV F ++A++A + + G+ N +I + + ++ +
Sbjct: 221 -----KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE 275
Query: 303 YPGSYSGTKGPRSEMFFGDQIRPSQLD 329
+ K R + G + LD
Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLD 302
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 145/322 (45%), Gaps = 51/322 (15%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL L + T +LK LFG G + DK+T S + FV + +DA+ A
Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYIDPKDAEKAI 97
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V G+ +T++++ELE+ F ++G I + L
Sbjct: 98 NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRIL 157
Query: 131 KDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRRE------ 176
D T F+ + + +A EA+K +NG++ G E + V F + PS++
Sbjct: 158 VDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF-ANNPSQKTNQAILS 216
Query: 177 ---QWPNSHDARDGPIIGRGTGFS-DN--HSAY--KRSHPQ------SSVGRNRDGPPSK 222
Q PN GP+ + F DN + AY KR P S G N G P
Sbjct: 217 QLYQSPNRR--YPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGT 274
Query: 223 --ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRA 274
++V Y + DE +L FG + +K + + + FV + DEA A
Sbjct: 275 GWCIFV-YNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333
Query: 275 KEGLQGRLFNDPRITIMFSSSE 296
L G D + + F +++
Sbjct: 334 IASLNGYRLGDRVLQVSFKTNK 355
>sp|Q9SJG8|AML2_ARATH Protein MEI2-like 2 OS=Arabidopsis thaliana GN=ML2 PE=2 SV=2
Length = 843
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKV-TTYSSRSFAFVYFKRVEDAKAAKDALQ 77
PS L+V N+++ D++L LF FG + + T SR F + + + A AA ALQ
Sbjct: 196 PSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQ 255
Query: 78 GSDFRGNPIKIEFARPAK-PSKH------LWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ R + I F+ P + PS+ L + + TVS +EL + F +G I + +
Sbjct: 256 NTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIRET 315
Query: 131 KDGN-TAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWP 179
+ F+EY + DA ALK +N +IGG+ ++++ R +RR P
Sbjct: 316 PNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLELSRPGGARRLSVP 365
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTY-----SSRSFAFVYFKRVEDAKAAKDA 75
+N++V NL+ TTD DLK FG++G + S+ F FV F+ +DA A ++
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 76 LQGSDF---------------RGNPIKIEFARPAKP------SKHLWVGGISQTVSKEEL 114
L G F R +++ + + K S +L+V + ++S E+L
Sbjct: 275 LNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 334
Query: 115 EEGFLKFGNIEDFKFLKDGN-----TAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169
+E F FG + K ++D N + FV ++ E+A EA+ ++G+ I + L V +
Sbjct: 335 KEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 394
Query: 170 SQPSRR 175
+ RR
Sbjct: 395 RKEDRR 400
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 124/292 (42%), Gaps = 70/292 (23%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVEDAKAAK 73
+++L+VG+L + TD+ L + FG+ G + V T S + +V F +DA A
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 74 DALQGSDFRGNPIKIEFARPAKPS------KHLWVGGISQTVSKEELEEGFLKFGNIEDF 127
L G PI++ ++ PS ++++ + +++ + L + F FGNI
Sbjct: 95 QELNYIPLYGKPIRVMYSH-RDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSC 153
Query: 128 KFLKDGN-----TAFVEYSRLEDAAEALKNINGRQIGGEQLRVD-FLRSQPSRREQWPNS 181
K D + FV+Y+ E A +A++ +NG + +Q+ V FLR Q R+ N
Sbjct: 154 KVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQ--ERDSTANK 211
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHN 241
T F++ Y ++ +S+ + L N
Sbjct: 212 ------------TKFTN---VYVKNLAESTTDDD-----------------------LKN 233
Query: 242 AMILFGEIERIKSY--------PSRNYSFVEFRSVDEARRAKEGLQGRLFND 285
A FGE +I S S+ + FV F + D+A RA E L G F+D
Sbjct: 234 A---FGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDD 282
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 19/178 (10%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGAL--DKVTTYSS---RSFAFVYFKRVEDAKAAKD 74
+ N+++ NL L + F FG + KV SS + + FV + E A+ A +
Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIE 182
Query: 75 ALQGSDFRGNPIKI-------EFARPAKPSK--HLWVGGISQTVSKEELEEGFLKFGNIE 125
L G + + E A +K +++V ++++ + ++L+ F ++G I
Sbjct: 183 KLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKIT 242
Query: 126 DFKFLKDGNT-----AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQW 178
+KDG FV + +DAA A++++NG + ++ V + + R +
Sbjct: 243 SAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 300
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 54/202 (26%)
Query: 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNI 153
L+VG + V+ +L + F + G + + +D T +V ++ +DAA A++ +
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 154 NGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVG 213
N + G+ +RV + PS R G G F N
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRS-------------GAGNIFIKNLDE----------- 133
Query: 214 RNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEFRSV 268
+D + LH+ FG I K S S+ Y FV++ +
Sbjct: 134 -------------------SIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANE 174
Query: 269 DEARRAKEGLQGRLFNDPRITI 290
+ A++A E L G L ND ++ +
Sbjct: 175 ESAQKAIEKLNGMLLNDKQVYV 196
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTY-----SSRSFAFVYFKRVEDAKAAKD 74
SSNL+V NL +D LKE+F FG + +S+ FV F E+A A
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMS 376
Query: 75 ALQGSDFRGNPIKIEFAR 92
L G P+ + A+
Sbjct: 377 QLSGKMIESKPLYVAIAQ 394
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 3/147 (2%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSS--RSFAFVYFKRVEDAKAAKDALQGSD 80
L++GNL D T +L+ F FG + ++ ++AF + + A + G
Sbjct: 658 LFIGNLEKDITAGELRSHFEAFGEIIEIDIKKQGLNAYAFCQYSDIVSVVKAMRKMDGEH 717
Query: 81 FRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEY 140
N IK+ F + + P+ +W+ G+ + VS+ L+ F +FG + ++ A V Y
Sbjct: 718 LGSNRIKLGFGK-SMPTNCVWIDGVDEKVSESFLQSQFTRFGAVTKVSIDRNRQLALVLY 776
Query: 141 SRLEDAAEALKNINGRQIGGEQLRVDF 167
++++A A+K++ G + ++L+VDF
Sbjct: 777 DQVQNAQAAVKDMRGTILRRKKLQVDF 803
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 118/303 (38%), Gaps = 78/303 (25%)
Query: 23 LWVGNLSADTTDADLKE-LFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDAL 76
+ V NL A ++D LK+ LF ++ KVT +S +A V FK+ +D + A +
Sbjct: 556 IRVRNLPARSSDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVS 615
Query: 77 QGSDFRGNPIKIE----------FARP---------AKPSKHLWVGGISQTVSKEELEEG 117
F G I++E RP K ++ L++G + + ++ EL
Sbjct: 616 HDKHFFGCKIEVEPYQGYDVEDNEFRPYEAELDEYHPKSTRTLFIGNLEKDITAGELRSH 675
Query: 118 FLKFGNIEDFKFLKDGNTA--FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRR 175
F FG I + K G A F +YS + +A++ ++G +G ++++ F +S P
Sbjct: 676 FEAFGEIIEIDIKKQGLNAYAFCQYSDIVSVVKAMRKMDGEHLGSNRIKLGFGKSMP--- 732
Query: 176 EQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWV-GYPPSVQM 234
+ +W+ G ++
Sbjct: 733 ---------------------------------------------TNCVWIDGV--DEKV 745
Query: 235 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 294
E L + FG + ++ +R + V + V A+ A + ++G + ++ + F+S
Sbjct: 746 SESFLQSQFTRFGAVTKVSIDRNRQLALVLYDQVQNAQAAVKDMRGTILRRKKLQVDFAS 805
Query: 295 SEL 297
E
Sbjct: 806 REC 808
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 45/73 (61%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQG 78
P++ +W+ + +++ L+ F +FGA+ KV+ +R A V + +V++A+AA ++G
Sbjct: 732 PTNCVWIDGVDEKVSESFLQSQFTRFGAVTKVSIDRNRQLALVLYDQVQNAQAAVKDMRG 791
Query: 79 SDFRGNPIKIEFA 91
+ R ++++FA
Sbjct: 792 TILRRKKLQVDFA 804
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 30/195 (15%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LK+LFGKFG V + S+ F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRGNPIKI-----------EFARPAKPSK----------HLWVGGISQTVSKEEL 114
+ G + G I + E R + K +L+V + + E L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 115 EEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170
+ F FG I K + +G + FV +S E+A +A+ +NGR + + L V +
Sbjct: 311 RKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 171 QPSRREQWPNSHDAR 185
+ R+ N + R
Sbjct: 371 KEERQAHLTNQYMQR 385
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 130/288 (45%), Gaps = 49/288 (17%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFARPAKPS------KHLWVGGISQTVSKEELEEGFLKFGNIED 126
D + +G P++I +++ PS ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ-RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 127 FKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSH 182
K + D N + FV + E A A++ +NG + ++ V + SR+E
Sbjct: 128 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK---SRKE------ 178
Query: 183 DARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNA 242
R+ + R F++ + + G + D K L+ + P++ +
Sbjct: 179 --REAELGARAKEFTNVYI--------KNFGEDMDDERLKDLFGKFGPALSV-------- 220
Query: 243 MILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI 290
++ +S S+ + FV F ++A++A + + G+ N +I +
Sbjct: 221 -----KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 110/285 (38%), Gaps = 51/285 (17%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGALDKVTTYS----SRSFAFVYFKRVEDAKAAKDALQ 77
N+++ NL + L + F FG + S+ + FV+F+ E A+ A + +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 78 GSDFRGNPIKI-----------EFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIED 126
G + + E AK ++++ + + E L++ F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 127 FKFLKDGNT-----AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNS 181
K + D + FV + R EDA +A+ +NG+++ G+Q+ V + + R+ +
Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHN 241
+ I R G + V DG +D++ L
Sbjct: 280 FEQMKQDRITRYQGVN------------LYVKNLDDG---------------IDDERLRK 312
Query: 242 AMILFGEIERIKSY----PSRNYSFVEFRSVDEARRAKEGLQGRL 282
FG I K S+ + FV F S +EA +A + GR+
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 30/195 (15%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LK+LFGKFG V + S+ F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRGNPIKI-----------EFARPAKPSK----------HLWVGGISQTVSKEEL 114
+ G + G I + E R + K +L+V + + E L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 115 EEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170
+ F FG I K + +G + FV +S E+A +A+ +NGR + + L V +
Sbjct: 311 RKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 171 QPSRREQWPNSHDAR 185
+ R+ N + R
Sbjct: 371 KEERQAHLTNQYMQR 385
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 130/288 (45%), Gaps = 49/288 (17%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFARPAKPS------KHLWVGGISQTVSKEELEEGFLKFGNIED 126
D + +G P++I +++ PS ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ-RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 127 FKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSH 182
K + D N + FV + E A A++ +NG + ++ V + SR+E
Sbjct: 128 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK---SRKE------ 178
Query: 183 DARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNA 242
R+ + R F++ + + G + D K L+ + P++ +
Sbjct: 179 --REAELGARAKEFTNVYI--------KNFGEDMDDERLKDLFGKFGPALSV-------- 220
Query: 243 MILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI 290
++ +S S+ + FV F ++A++A + + G+ N +I +
Sbjct: 221 -----KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 110/285 (38%), Gaps = 51/285 (17%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGALDKVTTYS----SRSFAFVYFKRVEDAKAAKDALQ 77
N+++ NL + L + F FG + S+ + FV+F+ E A+ A + +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 78 GSDFRGNPIKI-----------EFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIED 126
G + + E AK ++++ + + E L++ F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 127 FKFLKDGNT-----AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNS 181
K + D + FV + R EDA +A+ +NG+++ G+Q+ V + + R+ +
Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHN 241
+ I R G + V DG +D++ L
Sbjct: 280 FEQMKQDRITRYQGVN------------LYVKNLDDG---------------IDDERLRK 312
Query: 242 AMILFGEIERIKSY----PSRNYSFVEFRSVDEARRAKEGLQGRL 282
FG I K S+ + FV F S +EA +A + GR+
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 86/195 (44%), Gaps = 30/195 (15%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDA 75
+N+++ N D D LK+LFGKFG V + S+ F FV F+R EDA+ A D
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 76 LQGSDFRGNPIKI-----------EFARPAKPSK----------HLWVGGISQTVSKEEL 114
+ G + G I + E R + K +L+V + + E L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 115 EEGFLKFGNIEDFKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170
+ F FG I K + +G + FV +S E+A +A+ +NGR + + L V +
Sbjct: 311 RKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 171 QPSRREQWPNSHDAR 185
+ R+ N + R
Sbjct: 371 KEERQAHLTNQYMQR 385
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 130/288 (45%), Gaps = 49/288 (17%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVEDAKAA 72
P ++L+VG+L D T+A L E F G + + T S +A+V F++ DA+ A
Sbjct: 9 PMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERA 68
Query: 73 KDALQGSDFRGNPIKIEFARPAKPS------KHLWVGGISQTVSKEELEEGFLKFGNIED 126
D + +G P++I +++ PS ++++ + +++ + L + F FGNI
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ-RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 127 FKFLKDGNTA----FVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSH 182
K + D N + FV + E A A++ +NG + ++ V + SR+E
Sbjct: 128 CKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK---SRKE------ 178
Query: 183 DARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNA 242
R+ + R F++ + + G + D K L+ + P++ +
Sbjct: 179 --REAELGARAKEFTNVYI--------KNFGEDMDDERLKDLFGKFGPALSV-------- 220
Query: 243 MILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI 290
++ +S S+ + FV F ++A++A + + G+ N +I +
Sbjct: 221 -----KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 263
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 110/285 (38%), Gaps = 51/285 (17%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGALDKVTTYS----SRSFAFVYFKRVEDAKAAKDALQ 77
N+++ NL + L + F FG + S+ + FV+F+ E A+ A + +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 78 GSDFRGNPIKI-----------EFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIED 126
G + + E AK ++++ + + E L++ F KFG
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 127 FKFLKDGNT-----AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNS 181
K + D + FV + R EDA +A+ +NG+++ G+Q+ V + + R+ +
Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 182 HDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHN 241
+ I R G + V DG +D++ L
Sbjct: 280 FEQMKQDRITRYQGVN------------LYVKNLDDG---------------IDDERLRK 312
Query: 242 AMILFGEIERIKSY----PSRNYSFVEFRSVDEARRAKEGLQGRL 282
FG I K S+ + FV F S +EA +A + GR+
Sbjct: 313 EFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRI 357
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 145/338 (42%), Gaps = 55/338 (16%)
Query: 9 NRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFV 61
N A DD + +NL V L + T + K LFG G + DK+T S + FV
Sbjct: 31 NGATDDSK----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG-QSLGYGFV 85
Query: 62 YFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGF 118
+ DA A + L G + IK+ +ARP+ S +L+V G+ +T+S++E+E+ F
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Query: 119 LKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRS 170
++G I + L D T F+ + + +A EA+K +NG++ G E + V F +
Sbjct: 146 SQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205
Query: 171 QPSRREQWPNSH----DARD--GPIIGRGTGFS-DN--HSAYKRSHPQSSVGRNR----D 217
+ Q +H AR GP+ + F DN + AY P S + R D
Sbjct: 206 PSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAID 265
Query: 218 G-----------PPSKILWV--GYPPSVQMDEQMLHNAMILFGEIERIK------SYPSR 258
G + W Y S + DE +L FG + +K + +
Sbjct: 266 GMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCK 325
Query: 259 NYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
+ FV + DEA A L G + + + F +S+
Sbjct: 326 GFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 145/338 (42%), Gaps = 55/338 (16%)
Query: 9 NRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFV 61
N A DD + +NL V L + T + K LFG G + DK+T S + FV
Sbjct: 31 NGATDDSK----TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITG-QSLGYGFV 85
Query: 62 YFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGF 118
+ DA A + L G + IK+ +ARP+ S +L+V G+ +T+S++E+E+ F
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Query: 119 LKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRS 170
++G I + L D T F+ + + +A EA+K +NG++ G E + V F +
Sbjct: 146 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANN 205
Query: 171 QPSRREQWPNSH----DARD--GPIIGRGTGFS-DN--HSAYKRSHPQSSVGRNR----D 217
+ Q +H AR GP+ + F DN + AY P S + R D
Sbjct: 206 PSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARFSPIAID 265
Query: 218 G-----------PPSKILWV--GYPPSVQMDEQMLHNAMILFGEIERIK------SYPSR 258
G + W Y S + DE +L FG + +K + +
Sbjct: 266 GMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCK 325
Query: 259 NYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296
+ FV + DEA A L G + + + F +S+
Sbjct: 326 GFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
>sp|Q1JQ73|ELV1A_XENLA ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-a PE=1 SV=1
Length = 337
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 139/325 (42%), Gaps = 59/325 (18%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRS----------FAFVYF 63
+NL V L + T +L+ LF G + DKV + RS + FV +
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNY 79
Query: 64 KRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLK 120
+DA+ A + L G + IK+ FARP+ S +L++ G+ +T++++++E+ FL
Sbjct: 80 LNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYISGLPRTMTQKDVEDMFLP 139
Query: 121 FGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDF----- 167
FG+I + + L D T AF+ + + +A EA+ + NG + G E + V F
Sbjct: 140 FGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPN 199
Query: 168 ------LRSQ----PSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRD 217
L SQ P+RR P H A+ G D+ S+ SSV
Sbjct: 200 QNKNVALLSQICHSPARRFGGPVHHQAQRFRFSPMGV---DHMSSI------SSVNVASS 250
Query: 218 GPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEA 271
++V Y DE +L FG + +K + + + FV + +EA
Sbjct: 251 ATSGWCIFV-YNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 309
Query: 272 RRAKEGLQGRLFNDPRITIMFSSSE 296
A L G D + + F +S+
Sbjct: 310 AMAIASLNGYRLGDKTLQVSFKTSK 334
Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 86/226 (38%), Gaps = 67/226 (29%)
Query: 16 EAPPSSNLWVGNLSADTTDADLKELFGKFG------ALDKVTTYSSRSFAFVYFKRVEDA 69
E+ +NL++ L T D++++F FG L T SR AF+ F + +A
Sbjct: 112 ESIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEA 171
Query: 70 KAAKDALQGSDFRGN--PIKIEFA---------------------RPAKPSKH------- 99
+ A + G G+ PI ++FA R P H
Sbjct: 172 EEAIASFNGHKPPGSSEPITVKFAANPNQNKNVALLSQICHSPARRFGGPVHHQAQRFRF 231
Query: 100 -------------------------LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGN 134
++V + Q + L + F FG + + K ++D N
Sbjct: 232 SPMGVDHMSSISSVNVASSATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFN 291
Query: 135 T------AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174
T FV + E+AA A+ ++NG ++G + L+V F S+ +
Sbjct: 292 TNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSKSHK 337
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 31/197 (15%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFG-----ALDKVTTYSSRSFAFVYFKRVEDAKAAKDA 75
+NL+V N++++TTD +ELF KFG +L+K + F FV +++ EDA A +A
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 76 LQGSDFRGNPIKI-----------------EFARPAKPSKH----LWVGGISQTVSKEEL 114
L S+ G + + E R K +K+ L+V + +V E+L
Sbjct: 279 LNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKL 338
Query: 115 EEGFLKFGNIEDFKFLKDGNT-----AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169
EE F +G I K ++ N FV +S E+A +A+ N + + G+ L V +
Sbjct: 339 EEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 170 SQPSRREQWPNSHDARD 186
+ RR Q AR+
Sbjct: 399 RKDVRRSQLAQQIQARN 415
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 21/186 (11%)
Query: 20 SSNLWVGNLSADTTDADLKELFGKFGAL--DKVTTYS---SRSFAFVYFKRVEDAKAAKD 74
S N+++ NL D + L + F FG + K+ T S+ F FV+F+ AK A D
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAID 184
Query: 75 ALQGSDFRGNPIKI--EFARPAKPSK---------HLWVGGISQTVSKEELEEGFLKFGN 123
AL G G I + +R + S+ +L+V I+ + E+ +E F KFG
Sbjct: 185 ALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGP 244
Query: 124 IEDFKFLKDGNT-----AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQW 178
I KD + FV Y + EDA +A++ +N ++ GE+L V + + R
Sbjct: 245 IVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVL 304
Query: 179 PNSHDA 184
++A
Sbjct: 305 KKQYEA 310
Score = 38.1 bits (87), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 54/205 (26%)
Query: 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEAL 150
S L+VG + +VS+ L + F G++ + +D T A+V ++ E +A+
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 151 KNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQS 210
+ +N I G R+ + + PS R++ G G F N HP
Sbjct: 97 EQLNYTPIKGRLCRIMWSQRDPSLRKK-------------GSGNIFIKN------LHP-- 135
Query: 211 SVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEF 265
+D + L++ +FG+I K + S+ + FV F
Sbjct: 136 ----------------------DIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHF 173
Query: 266 RSVDEARRAKEGLQGRLFNDPRITI 290
A+ A + L G L N I +
Sbjct: 174 EEEGAAKEAIDALNGMLLNGQEIYV 198
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/321 (26%), Positives = 141/321 (43%), Gaps = 41/321 (12%)
Query: 9 NRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFV 61
N A DD + +NL V L + T + K LFG G + DK+T S + FV
Sbjct: 27 NGAADDSK----TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITG-QSLGYGFV 81
Query: 62 YFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGF 118
+ DA A + L G + IK+ +ARP+ S +L+V + +T++++E+E+ F
Sbjct: 82 NYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLF 141
Query: 119 LKFGNIEDFKFLKDGNT-------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLR 169
++G I + L D T F+ + + +A EA+K +NG++ G E + V F
Sbjct: 142 SQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFAN 201
Query: 170 SQPSRREQWPNSH----DAR--DGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSK- 222
+ + Q +H AR GP+ + F S + G + GP +
Sbjct: 202 NPSQKTGQALLTHLYQTTARRYTGPLHHQTQRF--RFSPITIDSVTNLAGVSLTGPTTAG 259
Query: 223 -ILWVGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAK 275
++V Y S + DE +L FG + +K + + + FV + DEA A
Sbjct: 260 WCIFV-YNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 318
Query: 276 EGLQGRLFNDPRITIMFSSSE 296
L G D + + F +S+
Sbjct: 319 ASLNGYRLGDRVLQVSFKTSK 339
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 139/314 (44%), Gaps = 41/314 (13%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T + K LFG G + DK+T S + FV + DA A
Sbjct: 34 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITG-QSLGYGFVNYVDPNDADKAI 92
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ +ARP+ S +L+V + +T++++E+E+ F ++G I + L
Sbjct: 93 NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRIL 152
Query: 131 KDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQPSRREQWPNSH 182
D T F+ + + +A EA+K +NG++ G E + V F + + Q +H
Sbjct: 153 VDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQALLTH 212
Query: 183 ----DAR--DGPIIGRGTGFSDNHSAYKRSHP------QSSVGRNRDGPPSK--ILWVGY 228
AR GP+ + FS S R P + G + GP + ++V Y
Sbjct: 213 LYQTTARRYTGPLHHQTQRFSP-LSILPRFSPITIDSVTNLAGVSLTGPTTAGWCIFV-Y 270
Query: 229 PPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGRL 282
S + DE +L FG + +K + + + FV + DEA A L G
Sbjct: 271 NLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 330
Query: 283 FNDPRITIMFSSSE 296
D + + F +S+
Sbjct: 331 LGDRVLQVSFKTSK 344
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 15/156 (9%)
Query: 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKV------TTYSSRSFAFVYFKRVE 67
D + +NL V L D TD +L LF G ++ T S +AFV F
Sbjct: 78 DNQGCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEI 137
Query: 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNI 124
DA+ A +L G R +K+ +ARP S +L+V + +T++ +ELE+ F K+GNI
Sbjct: 138 DAQNAIKSLNGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNI 197
Query: 125 EDFKFLKDGNT------AFVEYSRLEDAAEALKNIN 154
L+D T AFV +++ E+A EA+ +N
Sbjct: 198 VQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 233
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT------AFVEYSRLEDAAEALKN 152
+L V + Q ++ EL F G I + +KD T AFV+++ DA A+K+
Sbjct: 86 NLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKS 145
Query: 153 INGRQIGGEQLRVDFLR 169
+NG + ++L+V + R
Sbjct: 146 LNGVTVRNKRLKVSYAR 162
>sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 OS=Mus musculus GN=Rbm14 PE=1 SV=1
Length = 669
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 9/150 (6%)
Query: 22 NLWVGNL-SADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD 80
++VGN+ ADTT +L LF +G + + FAFV+ + A A +AL G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVM--KQFAFVHMRENAGAVRAIEALHGHE 59
Query: 81 FR-GNPIKIEFARPAKP--SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAF 137
R G + +E +RP +P + ++VG +S + +EL F + G + + +KD AF
Sbjct: 60 LRPGRALVVEMSRP-RPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAF 116
Query: 138 VEYSRLEDAAEALKNINGRQIGGEQLRVDF 167
V + DA A+ +NG+++ G+++ V+
Sbjct: 117 VHMEKEADAKAAIAQLNGKEVKGKRINVEL 146
>sp|Q5EA36|RBM14_BOVIN RNA-binding protein 14 OS=Bos taurus GN=RBM14 PE=2 SV=1
Length = 669
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 9/150 (6%)
Query: 22 NLWVGNL-SADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD 80
++VGN+ ADTT +L LF +G + + FAFV+ + A A +AL G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVM--KQFAFVHMRENAGAVRAIEALHGHE 59
Query: 81 FR-GNPIKIEFARPAKP--SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAF 137
R G + +E +RP +P + ++VG +S + +EL F + G + + +KD AF
Sbjct: 60 LRPGRALVVEMSRP-RPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAF 116
Query: 138 VEYSRLEDAAEALKNINGRQIGGEQLRVDF 167
V + DA A+ +NG+++ G+++ V+
Sbjct: 117 VHMEKEADAKAAIAQLNGKEVKGKRINVEL 146
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 22 NLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDF 81
++VGN+SA T +L+ LF + G + + + +AFV+ ++ DAKAA L G +
Sbjct: 80 KIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEV 137
Query: 82 RGNPIKIEFA 91
+G I +E +
Sbjct: 138 KGKRINVELS 147
>sp|Q5RC41|RBM14_PONAB RNA-binding protein 14 OS=Pongo abelii GN=RBM14 PE=2 SV=1
Length = 669
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 9/150 (6%)
Query: 22 NLWVGNL-SADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD 80
++VGN+ ADTT +L LF +G + + FAFV+ + A A +AL G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVM--KQFAFVHMRENAGALRAIEALHGHE 59
Query: 81 FR-GNPIKIEFARPAKP--SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAF 137
R G + +E +RP +P + ++VG +S + +EL F + G + + +KD AF
Sbjct: 60 LRPGRALVVEMSRP-RPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAF 116
Query: 138 VEYSRLEDAAEALKNINGRQIGGEQLRVDF 167
V + DA A+ +NG+++ G+++ V+
Sbjct: 117 VHMEKEADAKAAIAQLNGKEVKGKRINVEL 146
>sp|Q96PK6|RBM14_HUMAN RNA-binding protein 14 OS=Homo sapiens GN=RBM14 PE=1 SV=2
Length = 669
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 9/150 (6%)
Query: 22 NLWVGNL-SADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD 80
++VGN+ ADTT +L LF +G + + FAFV+ + A A +AL G +
Sbjct: 2 KIFVGNVDGADTTPEELAALFAPYGTVMSCAVM--KQFAFVHMRENAGALRAIEALHGHE 59
Query: 81 FR-GNPIKIEFARPAKP--SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAF 137
R G + +E +RP +P + ++VG +S + +EL F + G + + +KD AF
Sbjct: 60 LRPGRALVVEMSRP-RPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--YAF 116
Query: 138 VEYSRLEDAAEALKNINGRQIGGEQLRVDF 167
V + DA A+ +NG+++ G+++ V+
Sbjct: 117 VHMEKEADAKAAIAQLNGKEVKGKRINVEL 146
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 73.6 bits (179), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDA---LQGS 79
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 80 DFRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ------WPNSHDARDGP 188
R EDA EA++ ++ + G+++ V LR+ P +Q H +++ P
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP 176
Query: 189 I--IGRGTGFSDNHS 201
+ GR F++ ++
Sbjct: 177 VDRTGRVADFTEQYN 191
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDA---LQGS 79
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 80 DFRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ------WPNSHDARDGP 188
R EDA EA++ ++ + G+++ V LR+ P +Q H +++ P
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP 176
Query: 189 I--IGRGTGFSDNHS 201
+ GR F++ ++
Sbjct: 177 VDRTGRVADFTEQYN 191
>sp|Q9LYN7|AML4_ARATH Protein MEI2-like 4 OS=Arabidopsis thaliana GN=ML4 PE=1 SV=1
Length = 907
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 8/151 (5%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKV-TTYSSRSFAFVYFKRVEDAKAAKDALQGSDF 81
L+V N+ + D +L LF +FG + + T +R F V + + A+ A AL G
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDVRALHTAGKNRGFIMVSYYDIRAAQKAARALHGRLL 272
Query: 82 RGNPIKIEFARPAKPSKH------LWVGGISQTVSKEELEEGFLKFGNIEDFK-FLKDGN 134
RG + I ++ P + K LWV + ++S EEL F +G I + + + + +
Sbjct: 273 RGRKLDIRYSIPKENPKENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENS 332
Query: 135 TAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165
++E+ + A AL+ +NG ++ G QL++
Sbjct: 333 QVYIEFFDVRKAKVALQGLNGLEVAGRQLKL 363
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDA---LQGS 79
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 80 DFRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ------WPNSHDARDGP 188
R EDA EA++ ++ + G+++ V LR+ P +Q H +++ P
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP 176
Query: 189 I--IGRGTGFSDNHS 201
+ GR F++ ++
Sbjct: 177 VDRTGRVADFTEQYN 191
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDA---LQGS 79
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 80 DFRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ------WPNSHDARDGP 188
R EDA EA++ ++ + G+++ V LR+ P +Q H +++ P
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP 176
Query: 189 I--IGRGTGFSDNHS 201
+ GR F++ ++
Sbjct: 177 VDRTGRVADFTEQYN 191
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 15/163 (9%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDA---LQGS 79
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 80 DFRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ 177
R EDA EA++ ++ + G+++ V LR+ P +Q
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQ 159
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 100/195 (51%), Gaps = 23/195 (11%)
Query: 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDA---LQGS 79
L++GNL + T+ +++ LF ++G + + +++ FV+ +ED AA+DA L
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVH---IEDKTAAEDAIRNLHHY 58
Query: 80 DFRGNPIKIEFAR-PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFV 138
G I +E ++ +K S L VG IS T + +EL F ++G + + +KD AFV
Sbjct: 59 KLHGVNINVEASKNKSKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFV 116
Query: 139 EYSRLEDAAEALKNINGRQIGGEQLRVDF----LRSQPSRREQ------WPNSHDARDGP 188
R EDA EA++ ++ + G+++ V LR+ P +Q H +++ P
Sbjct: 117 HMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEGHWSKECP 176
Query: 189 I--IGRGTGFSDNHS 201
+ GR F++ ++
Sbjct: 177 VDRTGRVADFTEQYN 191
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 132/317 (41%), Gaps = 54/317 (17%)
Query: 21 SNLWVGNLSADTTDADLKELFGKFGAL-------DKVTTYSSRSFAFVYFKRVEDAKAAK 73
+NL V L + T +L+ LF G + DKV +S + FV + +DA+ A
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYLNAKDAERAI 78
Query: 74 DALQGSDFRGNPIKIEFARPAKPS---KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130
+ L G + IK+ ARP+ S +L++ G+ +T++++++E+ FL FG I + + L
Sbjct: 79 NTLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVL 138
Query: 131 KDGNT------AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDF--------------- 167
D T AF+ + + +A EA+ + NG + G E + V F
Sbjct: 139 VDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQNKNMALLSQ 198
Query: 168 LRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSK--ILW 225
L P+RR P H A+ G H S G N S ++
Sbjct: 199 LCHSPARRFGGPVHHQAQRFRFSPMGV-----------DHMSSISGVNVASSASSGWCIF 247
Query: 226 VGYPPSVQMDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQ 279
+ Y DE +L FG + +K + + + FV + +EA A L
Sbjct: 248 I-YNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLN 306
Query: 280 GRLFNDPRITIMFSSSE 296
G D + + F +S+
Sbjct: 307 GYRLGDKTLQVFFKTSK 323
Score = 40.4 bits (93), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 86/226 (38%), Gaps = 67/226 (29%)
Query: 16 EAPPSSNLWVGNLSADTTDADLKELFGKFG------ALDKVTTYSSRSFAFVYFKRVEDA 69
E+ +NL++ L T D++++F FG L T SR AF+ F + +A
Sbjct: 101 ESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEA 160
Query: 70 KAAKDALQGSDFRGN--PIKIEFA---------------------RPAKPSKH------- 99
+ A + G G+ PI ++FA R P H
Sbjct: 161 EEAIASFNGHKPPGSSEPITVKFAANPNQNKNMALLSQLCHSPARRFGGPVHHQAQRFRF 220
Query: 100 -------------------------LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGN 134
+++ + Q + L + F FG + + K ++D N
Sbjct: 221 SPMGVDHMSSISGVNVASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFN 280
Query: 135 T------AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174
T FV + E+AA A+ ++NG ++G + L+V F S+ +
Sbjct: 281 TNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVFFKTSKSHK 326
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 32/202 (15%)
Query: 9 NRAYDDKEAPPS-SNLWVGNLSADTTDADLKELFGKFGALDKVTTY-----SSRSFAFVY 62
+RA + A PS +N++V NL + TD +LK+ FGK+G + +SRSF FV
Sbjct: 226 DRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVN 285
Query: 63 FKRVEDAKAAKDALQGSDFRGNPI-----------------KIEFARPAKPSK----HLW 101
F E A A + + G + + K E R ++ K +L+
Sbjct: 286 FVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLY 345
Query: 102 VGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT-----AFVEYSRLEDAAEALKNINGR 156
+ + +V+ E+L+E F ++GN+ K + + FV YS E+A A+K +NG+
Sbjct: 346 LKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGK 405
Query: 157 QIGGEQLRVDFLRSQPSRREQW 178
IG + L V + + R+
Sbjct: 406 MIGRKPLYVALAQRKEERQAHL 427
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKV-----TTYSSRSFAFVYFKRVEDAKAAK 73
P+S+L+VG+L ++ L +LF + + + T+ S +A+V F EDA A
Sbjct: 57 PNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAM 116
Query: 74 DALQGSDFRGNPIKIEFARPAKPSKHL------WVGGISQTVSKEELEEGFLKFGNIEDF 127
++L + R PI+I + PS L ++ + ++ + L E F FG I
Sbjct: 117 ESLNYAPIRDRPIRIMLSN-RDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSC 175
Query: 128 KFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV-DFLRSQPSRREQ 177
K D FV++ + E A A+ +NG + +Q+ V F+R Q R +
Sbjct: 176 KVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSE 231
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,666,899
Number of Sequences: 539616
Number of extensions: 17383057
Number of successful extensions: 36755
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 757
Number of HSP's that attempted gapping in prelim test: 33672
Number of HSP's gapped (non-prelim): 2656
length of query: 957
length of database: 191,569,459
effective HSP length: 127
effective length of query: 830
effective length of database: 123,038,227
effective search space: 102121728410
effective search space used: 102121728410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)