Query 002168
Match_columns 957
No_of_seqs 306 out of 2088
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 18:03:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.2E-38 1.6E-42 351.8 32.8 278 19-297 2-350 (352)
2 KOG0117 Heterogeneous nuclear 100.0 1.4E-34 3E-39 317.7 33.4 247 12-303 75-338 (506)
3 TIGR01648 hnRNP-R-Q heterogene 100.0 4.5E-34 9.8E-39 335.9 36.3 242 13-299 51-310 (578)
4 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.4E-34 1.2E-38 334.5 33.9 278 19-296 1-351 (481)
5 TIGR01628 PABP-1234 polyadenyl 100.0 3.4E-34 7.4E-39 342.2 25.9 237 21-297 1-262 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 1.8E-33 3.9E-38 336.0 26.5 252 19-297 87-365 (562)
7 TIGR01622 SF-CC1 splicing fact 100.0 2.2E-32 4.8E-37 318.3 32.6 279 17-296 86-448 (457)
8 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3E-32 6.6E-37 321.1 31.9 265 14-295 169-501 (509)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.2E-31 2.6E-36 314.6 33.3 269 20-296 96-480 (481)
10 KOG0145 RNA-binding protein EL 100.0 4.9E-31 1.1E-35 272.6 22.4 278 17-296 38-358 (360)
11 TIGR01645 half-pint poly-U bin 100.0 4.1E-30 9E-35 302.9 29.4 156 17-172 104-285 (612)
12 KOG0148 Apoptosis-promoting RN 100.0 9.7E-30 2.1E-34 265.1 19.4 223 17-297 3-239 (321)
13 KOG0127 Nucleolar protein fibr 100.0 1.7E-27 3.7E-32 266.6 26.1 275 20-295 5-377 (678)
14 KOG0144 RNA-binding protein CU 99.9 3E-27 6.4E-32 259.1 17.9 159 15-173 29-208 (510)
15 KOG0123 Polyadenylate-binding 99.9 7.4E-27 1.6E-31 264.0 20.4 232 21-296 2-246 (369)
16 TIGR01659 sex-lethal sex-letha 99.9 7.7E-26 1.7E-30 254.3 20.9 158 15-172 102-276 (346)
17 TIGR01659 sex-lethal sex-letha 99.9 4.4E-23 9.5E-28 232.1 26.1 159 94-297 104-276 (346)
18 KOG0123 Polyadenylate-binding 99.9 6.1E-24 1.3E-28 240.3 17.0 246 23-296 79-349 (369)
19 KOG0124 Polypyrimidine tract-b 99.9 6.6E-24 1.4E-28 227.9 15.8 153 20-172 113-291 (544)
20 KOG0148 Apoptosis-promoting RN 99.9 2.8E-23 6.2E-28 217.0 15.9 156 17-172 59-239 (321)
21 KOG0110 RNA-binding protein (R 99.9 1.3E-22 2.8E-27 234.5 19.5 247 16-298 381-695 (725)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.2E-22 4.8E-27 226.4 20.0 155 18-172 87-350 (352)
23 TIGR01645 half-pint poly-U bin 99.9 7.1E-22 1.5E-26 233.5 21.2 168 95-296 105-284 (612)
24 TIGR01648 hnRNP-R-Q heterogene 99.9 1.7E-21 3.8E-26 229.9 19.0 212 18-248 136-367 (578)
25 KOG0147 Transcriptional coacti 99.9 1.3E-21 2.9E-26 221.4 15.4 278 17-295 176-527 (549)
26 TIGR01622 SF-CC1 splicing fact 99.9 1.1E-20 2.4E-25 220.3 21.4 168 94-295 86-265 (457)
27 KOG1190 Polypyrimidine tract-b 99.8 1.6E-19 3.5E-24 197.5 25.1 283 15-298 23-375 (492)
28 KOG0144 RNA-binding protein CU 99.8 3.5E-20 7.6E-25 203.9 13.6 162 93-298 30-208 (510)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.8 1.1E-19 2.5E-24 214.5 17.8 154 18-171 293-502 (509)
30 KOG0117 Heterogeneous nuclear 99.8 1.6E-19 3.4E-24 199.7 15.0 156 18-175 162-335 (506)
31 KOG1456 Heterogeneous nuclear 99.8 1.2E-17 2.7E-22 180.8 27.6 289 10-298 21-365 (494)
32 KOG0109 RNA-binding protein LA 99.8 1.6E-19 3.4E-24 190.7 11.6 151 98-299 3-153 (346)
33 KOG0109 RNA-binding protein LA 99.8 1.1E-19 2.5E-24 191.8 9.4 148 21-172 3-151 (346)
34 KOG0131 Splicing factor 3b, su 99.8 5.9E-19 1.3E-23 176.1 11.4 158 17-174 6-180 (203)
35 KOG0110 RNA-binding protein (R 99.8 1.7E-18 3.6E-23 200.8 15.5 261 15-294 222-596 (725)
36 KOG1190 Polypyrimidine tract-b 99.8 3.5E-17 7.5E-22 179.4 23.1 269 18-296 148-491 (492)
37 KOG4212 RNA-binding protein hn 99.8 7.8E-17 1.7E-21 177.3 24.9 151 17-167 41-290 (608)
38 KOG0145 RNA-binding protein EL 99.8 4.4E-18 9.5E-23 177.0 14.2 157 95-296 39-209 (360)
39 KOG0131 Splicing factor 3b, su 99.8 4.8E-18 1.1E-22 169.6 12.6 163 94-300 6-181 (203)
40 KOG4211 Splicing factor hnRNP- 99.7 8.6E-16 1.9E-20 172.6 29.7 275 14-293 4-355 (510)
41 KOG0127 Nucleolar protein fibr 99.7 4E-17 8.7E-22 184.0 16.8 184 97-299 5-199 (678)
42 KOG1456 Heterogeneous nuclear 99.7 2.5E-15 5.4E-20 163.1 26.1 274 15-296 115-491 (494)
43 KOG0120 Splicing factor U2AF, 99.7 4.3E-16 9.2E-21 179.2 16.2 259 15-294 170-490 (500)
44 KOG0105 Alternative splicing f 99.7 2.8E-15 6.1E-20 149.9 19.0 177 95-291 4-185 (241)
45 KOG0146 RNA-binding protein ET 99.6 6E-16 1.3E-20 161.8 8.7 213 83-297 2-366 (371)
46 KOG0124 Polypyrimidine tract-b 99.6 5.8E-16 1.3E-20 167.2 7.9 165 97-295 113-289 (544)
47 KOG0105 Alternative splicing f 99.6 6.1E-15 1.3E-19 147.4 11.8 149 17-166 3-185 (241)
48 KOG4206 Spliceosomal protein s 99.6 5E-14 1.1E-18 146.1 17.9 197 95-294 7-220 (221)
49 KOG4205 RNA-binding protein mu 99.6 4.2E-15 9.1E-20 163.9 10.0 153 19-173 5-178 (311)
50 KOG4206 Spliceosomal protein s 99.6 4.6E-14 9.9E-19 146.3 15.2 153 17-169 6-220 (221)
51 KOG0146 RNA-binding protein ET 99.6 1.3E-14 2.9E-19 151.8 10.4 156 17-172 16-366 (371)
52 KOG0147 Transcriptional coacti 99.5 2.8E-14 6E-19 162.5 7.6 175 94-300 176-362 (549)
53 KOG1457 RNA binding protein (c 99.4 9.6E-13 2.1E-17 135.3 12.7 142 17-158 31-273 (284)
54 KOG0106 Alternative splicing f 99.4 1.5E-13 3.2E-18 143.7 6.2 143 21-167 2-167 (216)
55 KOG0106 Alternative splicing f 99.4 3.6E-13 7.7E-18 140.9 8.6 163 98-290 2-165 (216)
56 KOG4205 RNA-binding protein mu 99.4 1.4E-12 3.1E-17 144.0 11.7 163 96-299 5-179 (311)
57 KOG1548 Transcription elongati 99.4 1E-11 2.2E-16 134.9 16.9 192 95-295 132-351 (382)
58 KOG1457 RNA binding protein (c 99.4 7.6E-12 1.6E-16 128.8 14.9 189 95-284 32-274 (284)
59 PLN03134 glycine-rich RNA-bind 99.4 2E-12 4.3E-17 129.0 10.2 81 17-97 31-117 (144)
60 PLN03134 glycine-rich RNA-bind 99.3 8.6E-12 1.9E-16 124.5 11.3 79 94-172 31-115 (144)
61 PF00076 RRM_1: RNA recognitio 99.2 3.3E-11 7.2E-16 103.2 8.2 65 100-164 1-70 (70)
62 KOG0107 Alternative splicing f 99.2 2.3E-11 5E-16 121.6 7.8 78 95-172 8-86 (195)
63 PF00076 RRM_1: RNA recognitio 99.2 1.8E-11 3.9E-16 104.9 6.1 65 23-87 1-70 (70)
64 KOG1548 Transcription elongati 99.2 2.1E-10 4.5E-15 124.9 15.4 154 17-170 131-351 (382)
65 KOG4212 RNA-binding protein hn 99.2 4E-10 8.6E-15 125.1 17.5 201 92-293 39-291 (608)
66 PF07744 SPOC: SPOC domain; I 99.2 1.9E-11 4.2E-16 117.3 6.0 97 512-608 1-119 (119)
67 KOG1365 RNA-binding protein Fu 99.2 9.3E-11 2E-15 128.4 10.6 260 17-296 57-362 (508)
68 COG0724 RNA-binding proteins ( 99.1 2.3E-10 5E-15 120.5 11.7 114 20-133 115-261 (306)
69 KOG4211 Splicing factor hnRNP- 99.1 3.9E-09 8.6E-14 119.7 20.8 164 95-295 8-181 (510)
70 KOG0121 Nuclear cap-binding pr 99.1 1E-10 2.2E-15 111.5 6.1 76 17-92 33-114 (153)
71 KOG0107 Alternative splicing f 99.1 1.5E-10 3.3E-15 115.8 6.3 75 18-92 8-83 (195)
72 PLN03120 nucleic acid binding 99.1 2.7E-10 5.8E-15 122.4 8.6 73 20-93 4-79 (260)
73 KOG0121 Nuclear cap-binding pr 99.1 2.2E-10 4.8E-15 109.3 7.0 78 95-172 34-117 (153)
74 PF14259 RRM_6: RNA recognitio 99.1 2.1E-10 4.6E-15 99.3 6.4 65 23-87 1-70 (70)
75 PF13893 RRM_5: RNA recognitio 99.1 6.3E-10 1.4E-14 92.7 8.6 55 239-293 1-56 (56)
76 PF14259 RRM_6: RNA recognitio 99.1 4.9E-10 1.1E-14 97.0 8.3 65 100-164 1-70 (70)
77 KOG0125 Ataxin 2-binding prote 99.1 4.7E-10 1E-14 121.4 9.7 96 77-172 73-175 (376)
78 PLN03120 nucleic acid binding 99.0 7.1E-10 1.5E-14 119.2 9.6 74 97-171 4-80 (260)
79 KOG0122 Translation initiation 99.0 6.5E-10 1.4E-14 116.4 8.7 79 16-94 185-269 (270)
80 COG0724 RNA-binding proteins ( 99.0 3.5E-09 7.6E-14 111.5 13.5 138 97-256 115-259 (306)
81 KOG1365 RNA-binding protein Fu 99.0 8.5E-10 1.8E-14 121.0 8.7 151 20-171 161-362 (508)
82 KOG4660 Protein Mei2, essentia 99.0 7E-09 1.5E-13 119.3 16.0 153 17-170 72-249 (549)
83 smart00362 RRM_2 RNA recogniti 99.0 2.1E-09 4.6E-14 90.7 8.9 68 99-166 1-72 (72)
84 KOG0114 Predicted RNA-binding 99.0 1.3E-09 2.7E-14 100.7 7.8 80 93-172 14-96 (124)
85 smart00362 RRM_2 RNA recogniti 99.0 1.6E-09 3.5E-14 91.4 7.8 68 22-89 1-72 (72)
86 KOG0149 Predicted RNA-binding 99.0 8.6E-10 1.9E-14 115.2 6.7 74 18-92 10-89 (247)
87 KOG0120 Splicing factor U2AF, 99.0 1.7E-09 3.8E-14 125.3 9.8 155 17-171 286-492 (500)
88 KOG0122 Translation initiation 98.9 2.3E-09 5E-14 112.3 9.1 80 92-171 184-269 (270)
89 KOG0125 Ataxin 2-binding prote 98.9 2.1E-09 4.6E-14 116.4 8.2 81 18-98 94-178 (376)
90 PLN03213 repressor of silencin 98.9 2.1E-09 4.7E-14 120.7 8.5 77 95-171 8-88 (759)
91 PLN03213 repressor of silencin 98.9 2.2E-09 4.7E-14 120.7 8.4 79 15-93 5-87 (759)
92 PLN03121 nucleic acid binding 98.9 2.5E-09 5.5E-14 113.3 8.4 74 18-92 3-79 (243)
93 KOG0111 Cyclophilin-type pepti 98.9 6.5E-10 1.4E-14 114.4 3.2 80 17-96 7-92 (298)
94 PF13893 RRM_5: RNA recognitio 98.9 6.4E-09 1.4E-13 86.7 8.2 55 114-168 1-56 (56)
95 KOG0114 Predicted RNA-binding 98.9 4.4E-09 9.6E-14 97.2 7.5 101 17-122 15-118 (124)
96 KOG0108 mRNA cleavage and poly 98.9 3.1E-09 6.7E-14 122.5 7.4 77 98-174 19-101 (435)
97 cd00590 RRM RRM (RNA recogniti 98.9 7.7E-09 1.7E-13 87.7 7.8 69 22-90 1-74 (74)
98 smart00360 RRM RNA recognition 98.8 6.1E-09 1.3E-13 87.4 6.9 65 25-89 1-71 (71)
99 cd00590 RRM RRM (RNA recogniti 98.8 1.5E-08 3.2E-13 86.0 9.3 69 99-167 1-74 (74)
100 PLN03121 nucleic acid binding 98.8 1.3E-08 2.8E-13 108.0 9.4 73 96-169 4-79 (243)
101 KOG0132 RNA polymerase II C-te 98.8 1E-08 2.2E-13 121.1 8.5 74 19-92 420-493 (894)
102 KOG0126 Predicted RNA-binding 98.8 5E-10 1.1E-14 112.5 -2.0 76 16-91 31-112 (219)
103 KOG4207 Predicted splicing fac 98.8 5.9E-09 1.3E-13 106.8 5.2 76 96-171 12-93 (256)
104 KOG4207 Predicted splicing fac 98.8 7.7E-09 1.7E-13 105.9 5.8 77 16-92 9-91 (256)
105 smart00360 RRM RNA recognition 98.8 2.7E-08 5.8E-13 83.5 7.9 65 102-166 1-71 (71)
106 KOG0130 RNA-binding protein RB 98.8 1.1E-08 2.4E-13 98.5 5.9 74 18-91 70-149 (170)
107 KOG0111 Cyclophilin-type pepti 98.7 6.8E-09 1.5E-13 107.0 4.6 81 220-301 9-95 (298)
108 KOG0113 U1 small nuclear ribon 98.7 2E-08 4.2E-13 108.0 8.2 75 17-91 98-178 (335)
109 KOG0126 Predicted RNA-binding 98.7 3.1E-09 6.7E-14 107.0 2.0 98 73-170 10-114 (219)
110 KOG0129 Predicted RNA-binding 98.7 9.2E-08 2E-12 109.5 13.7 138 14-152 253-432 (520)
111 KOG0108 mRNA cleavage and poly 98.7 1.9E-08 4.2E-13 116.1 7.3 73 21-93 19-97 (435)
112 KOG0112 Large RNA-binding prot 98.7 1.1E-08 2.3E-13 122.6 5.0 160 13-172 365-532 (975)
113 KOG0113 U1 small nuclear ribon 98.7 8.5E-08 1.8E-12 103.2 10.9 84 217-301 97-186 (335)
114 KOG4307 RNA binding protein RB 98.7 1.3E-06 2.9E-11 102.2 20.2 151 18-170 309-513 (944)
115 KOG0149 Predicted RNA-binding 98.7 2.8E-08 6.1E-13 104.0 5.8 73 97-170 12-90 (247)
116 smart00361 RRM_1 RNA recogniti 98.6 1.3E-07 2.7E-12 82.8 7.6 55 236-290 2-69 (70)
117 KOG0130 RNA-binding protein RB 98.6 5.9E-08 1.3E-12 93.6 5.4 76 97-172 72-153 (170)
118 KOG0132 RNA polymerase II C-te 98.5 1.5E-07 3.3E-12 111.4 7.4 78 97-174 421-498 (894)
119 KOG4307 RNA binding protein RB 98.5 1.1E-06 2.4E-11 102.8 12.5 191 99-298 313-516 (944)
120 KOG0128 RNA-binding protein SA 98.4 3.2E-08 6.9E-13 118.3 -1.1 217 17-296 568-815 (881)
121 KOG0153 Predicted RNA-binding 98.4 4.3E-07 9.3E-12 99.6 6.8 80 14-93 222-302 (377)
122 smart00361 RRM_1 RNA recogniti 98.4 4.8E-07 1E-11 79.2 5.9 55 34-88 2-69 (70)
123 KOG0128 RNA-binding protein SA 98.4 1.1E-07 2.4E-12 113.8 1.7 140 17-170 664-814 (881)
124 KOG4454 RNA binding protein (R 98.4 1.1E-07 2.3E-12 98.5 1.2 130 17-157 6-149 (267)
125 KOG0153 Predicted RNA-binding 98.3 1.2E-06 2.6E-11 96.2 8.5 77 94-170 225-302 (377)
126 KOG0415 Predicted peptidyl pro 98.3 1.2E-06 2.5E-11 96.1 7.0 80 216-296 234-319 (479)
127 KOG0129 Predicted RNA-binding 98.2 1E-05 2.2E-10 93.1 13.7 156 96-277 258-432 (520)
128 KOG4660 Protein Mei2, essentia 98.2 8.1E-07 1.8E-11 102.7 4.1 175 95-295 73-249 (549)
129 KOG0112 Large RNA-binding prot 98.2 1.4E-06 3E-11 105.0 5.0 159 94-299 369-534 (975)
130 KOG4661 Hsp27-ERE-TATA-binding 98.2 2.9E-06 6.2E-11 97.3 6.9 76 97-172 405-486 (940)
131 KOG4661 Hsp27-ERE-TATA-binding 98.2 3.1E-06 6.8E-11 97.0 7.2 78 17-94 402-485 (940)
132 KOG0415 Predicted peptidyl pro 98.1 3.3E-06 7.2E-11 92.6 6.6 80 93-172 235-320 (479)
133 KOG4208 Nucleolar RNA-binding 98.1 7.5E-06 1.6E-10 84.7 7.2 78 17-94 46-130 (214)
134 KOG4210 Nuclear localization s 98.0 4.7E-06 1E-10 92.3 5.7 154 18-172 86-265 (285)
135 KOG4454 RNA binding protein (R 98.0 2.1E-06 4.5E-11 89.1 1.0 135 94-282 6-149 (267)
136 KOG0226 RNA-binding proteins [ 97.9 1E-05 2.3E-10 85.8 5.1 161 95-294 94-268 (290)
137 KOG4208 Nucleolar RNA-binding 97.9 2.8E-05 6E-10 80.6 8.0 76 220-296 48-130 (214)
138 KOG0151 Predicted splicing reg 97.9 1.6E-05 3.4E-10 93.9 6.9 78 15-92 169-255 (877)
139 KOG0533 RRM motif-containing p 97.9 2.3E-05 5E-10 84.4 7.6 87 16-102 79-170 (243)
140 KOG4210 Nuclear localization s 97.9 1.5E-05 3.3E-10 88.2 6.3 166 96-296 87-264 (285)
141 KOG2193 IGF-II mRNA-binding pr 97.9 2E-06 4.4E-11 95.9 -0.8 152 21-172 2-158 (584)
142 KOG0151 Predicted splicing reg 97.8 3.1E-05 6.7E-10 91.5 7.3 78 94-171 171-257 (877)
143 KOG0226 RNA-binding proteins [ 97.7 3.1E-05 6.8E-10 82.2 5.0 149 19-167 95-266 (290)
144 KOG0116 RasGAP SH3 binding pro 97.6 0.0002 4.4E-09 82.8 9.4 72 98-170 289-366 (419)
145 KOG2193 IGF-II mRNA-binding pr 97.6 1.1E-05 2.5E-10 90.1 -1.4 152 98-296 2-157 (584)
146 PF04059 RRM_2: RNA recognitio 97.6 0.00025 5.4E-09 66.4 7.6 73 20-92 1-85 (97)
147 KOG0116 RasGAP SH3 binding pro 97.5 0.00036 7.9E-09 80.8 10.4 70 224-295 291-366 (419)
148 KOG0533 RRM motif-containing p 97.5 0.00022 4.7E-09 77.0 8.0 79 95-173 81-164 (243)
149 PF11608 Limkain-b1: Limkain b 97.4 0.0004 8.8E-09 62.7 7.1 70 98-171 3-77 (90)
150 PF11608 Limkain-b1: Limkain b 97.4 0.00036 7.9E-09 63.0 6.5 68 21-92 3-75 (90)
151 KOG4676 Splicing factor, argin 97.3 0.00017 3.6E-09 80.6 3.7 192 98-292 8-222 (479)
152 KOG4209 Splicing factor RNPS1, 97.3 0.00024 5.3E-09 76.5 4.8 77 15-92 96-178 (231)
153 KOG4209 Splicing factor RNPS1, 97.2 0.00034 7.4E-09 75.4 5.3 77 94-171 98-180 (231)
154 KOG4676 Splicing factor, argin 97.1 0.00017 3.7E-09 80.5 1.4 136 21-158 8-213 (479)
155 PF08777 RRM_3: RNA binding mo 97.1 0.0011 2.4E-08 63.0 6.6 60 20-79 1-60 (105)
156 PF08777 RRM_3: RNA binding mo 97.0 0.00081 1.7E-08 64.0 4.9 70 98-167 2-76 (105)
157 PF04059 RRM_2: RNA recognitio 97.0 0.0027 6E-08 59.5 7.9 74 98-171 2-87 (97)
158 COG5175 MOT2 Transcriptional r 96.9 0.00086 1.9E-08 73.7 4.1 99 20-118 114-241 (480)
159 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0031 6.7E-08 52.6 5.6 52 21-73 2-53 (53)
160 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0048 1E-07 51.4 6.3 52 221-275 2-53 (53)
161 KOG1995 Conserved Zn-finger pr 96.3 0.0049 1.1E-07 69.0 5.6 78 15-92 61-152 (351)
162 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.014 3.1E-07 55.1 7.1 70 221-294 7-90 (100)
163 COG5175 MOT2 Transcriptional r 96.2 0.0085 1.8E-07 66.1 6.3 75 97-171 114-203 (480)
164 KOG2202 U2 snRNP splicing fact 96.2 0.0027 6E-08 68.1 2.5 57 237-293 83-145 (260)
165 KOG1996 mRNA splicing factor [ 96.2 0.011 2.3E-07 64.5 6.8 77 219-295 279-366 (378)
166 KOG1855 Predicted RNA-binding 96.0 0.18 3.8E-06 57.9 15.5 64 217-281 227-309 (484)
167 KOG0115 RNA-binding protein p5 96.0 0.0096 2.1E-07 64.0 5.3 96 68-167 6-110 (275)
168 KOG1996 mRNA splicing factor [ 95.9 0.017 3.7E-07 62.9 6.7 61 111-171 300-367 (378)
169 PF05172 Nup35_RRM: Nup53/35/4 95.8 0.019 4E-07 54.3 6.0 72 18-91 4-89 (100)
170 KOG3152 TBP-binding protein, a 95.8 0.006 1.3E-07 65.4 2.9 67 19-85 73-157 (278)
171 KOG3152 TBP-binding protein, a 95.5 0.0084 1.8E-07 64.4 2.5 67 96-162 73-157 (278)
172 KOG2202 U2 snRNP splicing fact 95.4 0.0071 1.5E-07 65.0 1.8 59 112-170 83-147 (260)
173 KOG1855 Predicted RNA-binding 95.2 0.017 3.8E-07 65.8 4.2 65 15-79 226-309 (484)
174 KOG4849 mRNA cleavage factor I 94.9 2.4 5.2E-05 47.7 19.2 72 221-293 80-160 (498)
175 KOG2314 Translation initiation 94.9 0.055 1.2E-06 63.6 6.9 75 219-293 56-141 (698)
176 KOG1995 Conserved Zn-finger pr 94.7 0.027 5.8E-07 63.3 3.9 79 94-172 63-155 (351)
177 KOG2416 Acinus (induces apopto 94.6 0.029 6.2E-07 66.2 4.0 76 16-91 440-519 (718)
178 KOG2416 Acinus (induces apopto 94.4 0.031 6.6E-07 66.0 3.6 80 93-172 440-523 (718)
179 PF08952 DUF1866: Domain of un 94.3 0.12 2.6E-06 51.9 6.9 56 238-296 52-107 (146)
180 PF08952 DUF1866: Domain of un 94.2 0.068 1.5E-06 53.6 5.0 76 15-93 22-106 (146)
181 KOG2314 Translation initiation 93.3 0.14 3E-06 60.4 6.1 64 18-81 56-130 (698)
182 PF04847 Calcipressin: Calcipr 92.9 0.21 4.5E-06 52.3 6.2 62 234-295 7-70 (184)
183 KOG2591 c-Mpl binding protein, 92.8 0.22 4.8E-06 58.7 6.8 94 69-166 150-247 (684)
184 PF15023 DUF4523: Protein of u 92.6 0.54 1.2E-05 46.9 8.2 56 237-294 105-160 (166)
185 KOG2135 Proteins containing th 92.3 0.059 1.3E-06 62.3 1.4 83 19-108 371-454 (526)
186 KOG4285 Mitotic phosphoprotein 91.2 0.78 1.7E-05 50.8 8.3 71 221-295 198-269 (350)
187 PF10567 Nab6_mRNP_bdg: RNA-re 91.0 2.8 6E-05 46.5 12.3 165 97-281 15-214 (309)
188 PF08675 RNA_bind: RNA binding 90.3 0.68 1.5E-05 42.3 5.8 56 98-155 9-64 (87)
189 KOG2591 c-Mpl binding protein, 90.2 0.54 1.2E-05 55.6 6.4 72 17-89 172-247 (684)
190 KOG4849 mRNA cleavage factor I 90.2 0.28 6E-06 54.9 3.8 72 18-89 78-157 (498)
191 KOG4285 Mitotic phosphoprotein 89.9 0.78 1.7E-05 50.8 6.9 63 20-84 197-259 (350)
192 PF03880 DbpA: DbpA RNA bindin 89.8 1.5 3.3E-05 38.9 7.6 68 223-293 2-74 (74)
193 KOG0115 RNA-binding protein p5 89.2 0.85 1.8E-05 49.5 6.5 89 145-285 6-99 (275)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 89.0 0.32 6.9E-06 50.6 3.1 68 17-84 4-83 (176)
195 PF10309 DUF2414: Protein of u 88.8 1.2 2.6E-05 38.6 5.9 54 98-153 6-62 (62)
196 PF04847 Calcipressin: Calcipr 88.6 0.91 2E-05 47.6 6.2 62 110-171 8-71 (184)
197 PF08675 RNA_bind: RNA binding 87.5 2 4.2E-05 39.4 6.7 55 221-279 9-63 (87)
198 PF11767 SET_assoc: Histone ly 87.4 1.9 4E-05 37.9 6.3 55 108-165 11-65 (66)
199 PF15023 DUF4523: Protein of u 87.3 1.6 3.5E-05 43.7 6.5 74 16-91 82-159 (166)
200 KOG2135 Proteins containing th 86.9 0.41 9E-06 55.6 2.6 62 235-297 386-447 (526)
201 PF03467 Smg4_UPF3: Smg-4/UPF3 86.7 1.3 2.9E-05 46.0 6.0 77 95-171 5-98 (176)
202 KOG2068 MOT2 transcription fac 86.7 0.38 8.2E-06 54.0 2.1 73 20-92 77-161 (327)
203 KOG2068 MOT2 transcription fac 85.7 0.34 7.3E-06 54.4 1.1 75 97-171 77-163 (327)
204 PF07576 BRAP2: BRCA1-associat 82.8 4.2 9.2E-05 39.2 7.1 61 100-160 16-81 (110)
205 KOG4574 RNA-binding protein (c 82.7 0.67 1.5E-05 57.2 1.9 72 22-93 300-373 (1007)
206 PF07576 BRAP2: BRCA1-associat 82.6 7.9 0.00017 37.4 8.8 75 218-293 10-92 (110)
207 PF10309 DUF2414: Protein of u 81.4 5.5 0.00012 34.6 6.5 54 20-76 5-62 (62)
208 KOG4574 RNA-binding protein (c 79.7 1.3 2.9E-05 54.7 3.1 73 100-172 301-375 (1007)
209 KOG0804 Cytoplasmic Zn-finger 75.7 3.8 8.2E-05 47.8 5.0 64 97-160 74-142 (493)
210 PF10567 Nab6_mRNP_bdg: RNA-re 70.7 39 0.00085 37.9 11.0 141 15-156 10-214 (309)
211 KOG3598 Thyroid hormone recept 70.6 3.4 7.3E-05 53.9 3.3 46 802-847 1994-2045(2220)
212 KOG4019 Calcineurin-mediated s 69.4 4.5 9.9E-05 42.1 3.4 80 218-297 8-91 (193)
213 PRK11634 ATP-dependent RNA hel 69.4 58 0.0013 40.7 13.6 71 222-295 487-562 (629)
214 KOG2253 U1 snRNP complex, subu 69.2 2.7 5.9E-05 51.0 2.0 72 93-167 36-107 (668)
215 PF07292 NID: Nmi/IFP 35 domai 67.8 3.8 8.2E-05 38.0 2.2 61 59-119 1-74 (88)
216 PF03880 DbpA: DbpA RNA bindin 66.7 15 0.00032 32.6 5.7 59 107-168 11-74 (74)
217 PF11767 SET_assoc: Histone ly 60.4 32 0.0007 30.2 6.5 55 233-290 11-65 (66)
218 KOG0958 DNA damage-responsive 58.9 6.4 0.00014 48.2 2.5 56 565-633 14-71 (690)
219 KOG2318 Uncharacterized conser 58.9 36 0.00078 41.3 8.5 49 240-293 255-305 (650)
220 KOG0804 Cytoplasmic Zn-finger 58.2 22 0.00048 41.8 6.5 67 17-83 71-142 (493)
221 KOG2253 U1 snRNP complex, subu 56.7 8.2 0.00018 47.1 2.9 72 16-90 36-107 (668)
222 KOG2318 Uncharacterized conser 54.2 36 0.00078 41.2 7.5 68 17-84 171-296 (650)
223 KOG4410 5-formyltetrahydrofola 51.4 24 0.00053 39.1 5.2 46 98-143 331-377 (396)
224 PF14111 DUF4283: Domain of un 50.3 18 0.0004 35.8 3.9 108 22-132 17-140 (153)
225 PHA01365 hypothetical protein 48.6 6.6 0.00014 35.4 0.3 66 548-615 5-83 (91)
226 KOG1924 RhoA GTPase effector D 44.3 1.3E+02 0.0027 38.2 10.0 22 30-51 81-102 (1102)
227 KOG2891 Surface glycoprotein [ 44.0 36 0.00078 37.6 5.0 125 31-158 48-247 (445)
228 smart00545 JmjN Small domain f 34.0 40 0.00087 27.1 2.6 28 576-613 14-41 (42)
229 KOG0119 Splicing factor 1/bran 32.4 3.8E+02 0.0082 32.5 11.1 15 663-677 305-319 (554)
230 PRK14548 50S ribosomal protein 31.4 1.1E+02 0.0023 28.3 5.3 53 100-152 23-80 (84)
231 KOG2884 26S proteasome regulat 30.6 94 0.002 33.6 5.4 61 550-619 124-185 (259)
232 PF13546 DDE_5: DDE superfamil 28.4 1.3E+02 0.0027 33.1 6.4 118 507-630 103-244 (273)
233 TIGR03636 L23_arch archaeal ri 28.3 1.4E+02 0.003 27.2 5.4 53 100-152 16-73 (77)
234 KOG4410 5-formyltetrahydrofola 27.6 1.2E+02 0.0027 33.8 5.9 51 16-66 326-377 (396)
235 cd00594 KU Ku-core domain; inc 27.0 1.1E+02 0.0023 33.8 5.5 34 565-598 110-145 (272)
236 KOG4019 Calcineurin-mediated s 26.6 42 0.0009 35.2 2.0 73 99-171 12-90 (193)
237 PF07292 NID: Nmi/IFP 35 domai 25.3 93 0.002 29.0 3.9 32 136-167 1-33 (88)
238 TIGR02772 Ku_bact Ku protein, 21.6 2.3E+02 0.0049 31.5 6.7 52 554-610 101-154 (258)
239 PF11823 DUF3343: Protein of u 20.9 3.9E+02 0.0084 23.5 6.9 66 57-127 2-69 (73)
240 cd00788 KU70 Ku-core domain, K 20.8 1.5E+02 0.0033 33.1 5.3 33 566-598 117-152 (287)
241 KOG4483 Uncharacterized conser 20.5 1.3E+02 0.0027 35.3 4.5 55 20-76 391-446 (528)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=7.2e-38 Score=351.77 Aligned_cols=278 Identities=25% Similarity=0.424 Sum_probs=212.2
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
+.++|||+|||.++||+||+++|+.||+|.+|+ +++++|||||+|.+.++|.+||+.|+|..|.|+.|+|+|++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 478999999999999999999999999999887 35688999999999999999999999999999999999998
Q ss_pred CCC---CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCC--e
Q 002168 93 PAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGG--E 161 (957)
Q Consensus 93 p~~---~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~G--r 161 (957)
+.. ..++|||+|||..+++++|+++|+.||.|..++++.+ +|+|||+|.+.++|++|++.|||..+.| .
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~ 161 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTE 161 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCce
Confidence 654 4678999999999999999999999999999999876 4789999999999999999999998876 6
Q ss_pred EEEEEEccCCccccCCCCCC-----CCCCCC--------------CccCCC----CCCCC--------------------
Q 002168 162 QLRVDFLRSQPSRREQWPNS-----HDARDG--------------PIIGRG----TGFSD-------------------- 198 (957)
Q Consensus 162 ~I~V~~ak~k~~rr~~~~~~-----~~~r~~--------------~~~~~~----~~~~~-------------------- 198 (957)
.|.|.|+............. ...... ...... .....
T Consensus 162 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
T TIGR01661 162 PITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAA 241 (352)
T ss_pred eEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccccc
Confidence 78888886543211100000 000000 000000 00000
Q ss_pred -CcccccCCCCC----CcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeC------CCcEEEEEeCC
Q 002168 199 -NHSAYKRSHPQ----SSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRS 267 (957)
Q Consensus 199 -~~~~~~~~~~~----~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~------srG~AFVeF~T 267 (957)
........... .............+|||+|++. .+++++|+++|++||.|++++|+. +||||||+|.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~-~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~ 320 (352)
T TIGR01661 242 QRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSP-DTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTN 320 (352)
T ss_pred ccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCC-CCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECC
Confidence 00000000000 0000000112234677777774 699999999999999999999973 58999999999
Q ss_pred HHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 002168 268 VDEARRAKEGLQGRLFNDPRITIMFSSSEL 297 (957)
Q Consensus 268 ~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~ 297 (957)
.++|.+||+.|||..|+|+.|+|.|+.++.
T Consensus 321 ~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 321 YDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 999999999999999999999999997653
No 2
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=317.73 Aligned_cols=247 Identities=26% Similarity=0.433 Sum_probs=217.4
Q ss_pred CCCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCcc-ccC
Q 002168 12 YDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDF-RGN 84 (957)
Q Consensus 12 ~d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I-~Gr 84 (957)
|+......+|.||||+||.++.|+||..+|.+.|+|-+++ .+.+||||||.|++.++|++|++.||+..| .|+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 6666678999999999999999999999999999999988 577999999999999999999999999988 588
Q ss_pred cccccccCCCCCCCceEEcCCCccCCHHHHHHhhcccC-CEeEEEEe-------ecCCceEEEeCCHHHHHHHHHHh-CC
Q 002168 85 PIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFL-------KDGNTAFVEYSRLEDAAEALKNI-NG 155 (957)
Q Consensus 85 ~I~V~~A~p~~~sr~LyVgNLP~~vTeedL~elFskfG-~I~~VkIl-------rdrG~AFVeF~t~edA~kAIe~L-nG 155 (957)
.|.|..+ ..+++|||||||++.++++|.+.|++.+ .|.+|.+. ++||||||+|.++..|..|-+.| ++
T Consensus 155 ~igvc~S---van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 155 LLGVCVS---VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred EeEEEEe---eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 9999887 6789999999999999999999999998 68888776 44799999999999999998876 44
Q ss_pred c-eeCCeEEEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCC
Q 002168 156 R-QIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQM 234 (957)
Q Consensus 156 ~-~i~Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~v 234 (957)
+ .+.|..+.|+|+......... .....++|+|.|+.. .+
T Consensus 232 ~~klwgn~~tVdWAep~~e~ded---------------------------------------~ms~VKvLYVRNL~~-~t 271 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPDED---------------------------------------TMSKVKVLYVRNLME-ST 271 (506)
T ss_pred ceeecCCcceeeccCcccCCChh---------------------------------------hhhheeeeeeeccch-hh
Confidence 3 778999999999876522110 222367899998885 79
Q ss_pred CHHHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCCCCCCC
Q 002168 235 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDY 303 (957)
Q Consensus 235 tEeeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~~pg~~~ 303 (957)
|||.|+++|..||.|++|+.+ |.||||.|.+.++|.+|++.+||++|+|..|.|.+|+......+.+
T Consensus 272 TeE~lk~~F~~~G~veRVkk~--rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 272 TEETLKKLFNEFGKVERVKKP--RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred hHHHHHHHHHhccceEEeecc--cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccch
Confidence 999999999999999999998 6699999999999999999999999999999999998876665543
No 3
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=4.5e-34 Score=335.89 Aligned_cols=242 Identities=27% Similarity=0.428 Sum_probs=204.5
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccc-cCcc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFR-GNPI 86 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~-Gr~I 86 (957)
+.......++|||+|||.+++|++|+++|++||.|.+|+ .++++|||||+|.+.++|.+||+.||+..|. |+.|
T Consensus 51 ~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 51 SGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred cCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence 344455679999999999999999999999999999887 3679999999999999999999999999885 7888
Q ss_pred cccccCCCCCCCceEEcCCCccCCHHHHHHhhcccC-CEeEEEEe-------ecCCceEEEeCCHHHHHHHHHHhCC--c
Q 002168 87 KIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFL-------KDGNTAFVEYSRLEDAAEALKNING--R 156 (957)
Q Consensus 87 ~V~~A~p~~~sr~LyVgNLP~~vTeedL~elFskfG-~I~~VkIl-------rdrG~AFVeF~t~edA~kAIe~LnG--~ 156 (957)
.|.++ ...++|||+|||.++++++|.++|++++ .+.++.+. +.+|+|||+|.++++|..|++.|+. .
T Consensus 131 ~V~~S---~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki 207 (578)
T TIGR01648 131 GVCIS---VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRI 207 (578)
T ss_pred ccccc---ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccce
Confidence 88876 3478999999999999999999999986 35554443 2368999999999999999998864 3
Q ss_pred eeCCeEEEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCH
Q 002168 157 QIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDE 236 (957)
Q Consensus 157 ~i~Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtE 236 (957)
.+.|+.|.|+|+..+..... ......++|||++++. .+++
T Consensus 208 ~l~Gr~I~VdwA~p~~~~d~---------------------------------------~~~~~~k~LfVgNL~~-~~te 247 (578)
T TIGR01648 208 QLWGHVIAVDWAEPEEEVDE---------------------------------------DVMAKVKILYVRNLMT-TTTE 247 (578)
T ss_pred EecCceEEEEeecccccccc---------------------------------------cccccccEEEEeCCCC-CCCH
Confidence 67899999999875431110 0112246788887774 7999
Q ss_pred HHHHHHHhhc--CCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCCC
Q 002168 237 QMLHNAMILF--GEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 299 (957)
Q Consensus 237 eeLr~~Fs~f--G~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~~p 299 (957)
++|+++|+.| |+|++|+++ ++||||+|.+.++|.+|++.|||.+|.|+.|+|.|++.....
T Consensus 248 e~L~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 248 EIIEKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHHHHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 9999999999 999999987 789999999999999999999999999999999999775443
No 4
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.4e-34 Score=334.48 Aligned_cols=278 Identities=21% Similarity=0.282 Sum_probs=212.4
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHh--cCCccccCcccccccCCCC-
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDAL--QGSDFRGNPIKIEFARPAK- 95 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~L--ng~~I~Gr~I~V~~A~p~~- 95 (957)
++++|||+|||+++||++|+++|++||.|.+|++.++++||||+|.+.++|.+|++.+ ++..|.|+.|+|.|+....
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~ 80 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEI 80 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCccc
Confidence 5899999999999999999999999999999998889999999999999999999864 6788999999999985321
Q ss_pred --------------CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCC--ceEEEeCCHHHHHHHHHHhCCceeC
Q 002168 96 --------------PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGN--TAFVEYSRLEDAAEALKNINGRQIG 159 (957)
Q Consensus 96 --------------~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG--~AFVeF~t~edA~kAIe~LnG~~i~ 159 (957)
...+|||+||++.+|+++|+++|+.||.|.+|++.++++ +|||+|.+.++|.+|++.|||..|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~ 160 (481)
T TIGR01649 81 KRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIY 160 (481)
T ss_pred ccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCccc
Confidence 112689999999999999999999999999999988865 7999999999999999999999985
Q ss_pred C--eEEEEEEccCCccc---------cCCCCCCCCCCC-----------CCc------cCCCCCCCCC----------cc
Q 002168 160 G--EQLRVDFLRSQPSR---------REQWPNSHDARD-----------GPI------IGRGTGFSDN----------HS 201 (957)
Q Consensus 160 G--r~I~V~~ak~k~~r---------r~~~~~~~~~r~-----------~~~------~~~~~~~~~~----------~~ 201 (957)
| +.|+|+|++..... ....+.....+. ... .....+.+.. ..
T Consensus 161 ~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 240 (481)
T TIGR01649 161 NGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDR 240 (481)
T ss_pred CCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCccccccc
Confidence 4 68999998854311 000000000000 000 0000000000 00
Q ss_pred cc---cCCCC-------CC---c--CCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCC-CcEEEEEe
Q 002168 202 AY---KRSHP-------QS---S--VGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS-RNYSFVEF 265 (957)
Q Consensus 202 ~~---~~~~~-------~~---~--~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~s-rG~AFVeF 265 (957)
.. ..... .. . ........++++|+|++++...+++++|+++|+.||.|.+|+++++ +|+|||+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f 320 (481)
T TIGR01649 241 MGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEM 320 (481)
T ss_pred CCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEE
Confidence 00 00000 00 0 0001123467788888887435999999999999999999999865 69999999
Q ss_pred CCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 266 RSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 266 ~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
.+.++|.+|++.|||..|.|+.|+|.+++.+
T Consensus 321 ~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 321 ADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 9999999999999999999999999998654
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.4e-34 Score=342.19 Aligned_cols=237 Identities=25% Similarity=0.441 Sum_probs=204.3
Q ss_pred CEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCC
Q 002168 21 SNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~ 94 (957)
.+|||+|||.++||++|.++|++||.|.+|+ +++++|||||+|.+.++|.+|++.+++..|.|+.|+|.|+..+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 3799999999999999999999999999888 3678899999999999999999999999999999999998643
Q ss_pred C-----CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002168 95 K-----PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (957)
Q Consensus 95 ~-----~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~ 164 (957)
. ...+|||+||+.++++++|+++|++||.|.+|++..+ +|+|||+|.+.++|++|++.+||..+.|+.|.
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 2 2468999999999999999999999999999999875 57999999999999999999999999999999
Q ss_pred EEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHh
Q 002168 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMI 244 (957)
Q Consensus 165 V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs 244 (957)
|.....+..+.. ......+++++.+++. .+++++|+++|+
T Consensus 161 v~~~~~~~~~~~--------------------------------------~~~~~~~~l~V~nl~~--~~tee~L~~~F~ 200 (562)
T TIGR01628 161 VGRFIKKHEREA--------------------------------------APLKKFTNLYVKNLDP--SVNEDKLRELFA 200 (562)
T ss_pred Eecccccccccc--------------------------------------ccccCCCeEEEeCCCC--cCCHHHHHHHHH
Confidence 986554332110 0011223445445444 599999999999
Q ss_pred hcCCeEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCCeeC----CCeEEEEeecCCC
Q 002168 245 LFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFN----DPRITIMFSSSEL 297 (957)
Q Consensus 245 ~fG~V~~VkI~~-----srG~AFVeF~T~edA~~AIe~LNGk~f~----Gr~I~V~~A~~~~ 297 (957)
.||+|+++++++ .+|||||+|.+.++|.+|++.|||+.|. |+.|.|.++..+.
T Consensus 201 ~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~ 262 (562)
T TIGR01628 201 KFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA 262 (562)
T ss_pred hcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh
Confidence 999999999873 4789999999999999999999999999 9999998886543
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.8e-33 Score=336.02 Aligned_cols=252 Identities=27% Similarity=0.420 Sum_probs=209.4
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
..++|||+|||.++++++|+++|++||.|.+|+ .++++|||||+|.+.++|.+|+++++|..+.|+.|.|....+
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 456899999999999999999999999999877 356899999999999999999999999999999999876542
Q ss_pred --------CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeC-
Q 002168 94 --------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIG- 159 (957)
Q Consensus 94 --------~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~- 159 (957)
....++|||+||+.++|+++|+++|+.||.|.++++.++ +|+|||+|.+.++|.+|++.|+|..+.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 223467999999999999999999999999999999876 568999999999999999999999999
Q ss_pred ---CeEEEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCH
Q 002168 160 ---GEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDE 236 (957)
Q Consensus 160 ---Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtE 236 (957)
|+.|.|.++..+..+.......... .............|||++++. .+++
T Consensus 247 ~~~g~~l~v~~a~~k~er~~~~~~~~~~--------------------------~~~~~~~~~~~~~l~V~nl~~-~~~~ 299 (562)
T TIGR01628 247 AKEGKKLYVGRAQKRAEREAELRRKFEE--------------------------LQQERKMKAQGVNLYVKNLDD-TVTD 299 (562)
T ss_pred cccceeeEeecccChhhhHHHHHhhHHh--------------------------hhhhhhcccCCCEEEEeCCCC-ccCH
Confidence 9999999887654332110000000 000001122234466666664 5999
Q ss_pred HHHHHHHhhcCCeEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 002168 237 QMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 297 (957)
Q Consensus 237 eeLr~~Fs~fG~V~~VkI~~-----srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~ 297 (957)
++|+++|+.||.|++++++. ++|||||+|.+.++|.+|++.|||+.|+|+.|.|.++..+.
T Consensus 300 ~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 300 EKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 99999999999999999973 57999999999999999999999999999999999997653
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.2e-32 Score=318.27 Aligned_cols=279 Identities=23% Similarity=0.352 Sum_probs=207.0
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
.+..++|||+|||..+++++|+++|++||.|.+|+ +++++|||||+|.+.++|.+|| .|+|..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 46688999999999999999999999999999888 3567999999999999999999 7999999999999987
Q ss_pred cCCC---------------CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHH
Q 002168 91 ARPA---------------KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEA 149 (957)
Q Consensus 91 A~p~---------------~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kA 149 (957)
+... ...++|||+||+..+++++|+++|+.||.|..|.++++ +|+|||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 6421 22578999999999999999999999999999999965 47899999999999999
Q ss_pred HHHhCCceeCCeEEEEEEccCCccccCCCCCCCCCCCCCccCC-----------------C---CC-CCCC------ccc
Q 002168 150 LKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGR-----------------G---TG-FSDN------HSA 202 (957)
Q Consensus 150 Ie~LnG~~i~Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~-----------------~---~~-~~~~------~~~ 202 (957)
++.|||..|.|+.|.|.|+......................+. . .. .... ...
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQK 324 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcc
Confidence 9999999999999999997633211110000000000000000 0 00 0000 000
Q ss_pred cc-----C---C------C-----CCCcCCCCCCCCCceEEEecCCCCCCCC---------HHHHHHHHhhcCCeEEEEE
Q 002168 203 YK-----R---S------H-----PQSSVGRNRDGPPSKILWVGYPPSVQMD---------EQMLHNAMILFGEIERIKS 254 (957)
Q Consensus 203 ~~-----~---~------~-----~~~~~~~~~~~~ps~VL~Vgnpps~~vt---------EeeLr~~Fs~fG~V~~VkI 254 (957)
.. . . . ............+++++++.++...... .++|++.|++||.|++|.+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v 404 (457)
T TIGR01622 325 LQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYV 404 (457)
T ss_pred ccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEE
Confidence 00 0 0 0 0000000002245667776665332111 3689999999999999999
Q ss_pred e--CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 255 Y--PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 255 ~--~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
. ...|++||+|.++++|.+|++.|||+.|+|+.|.|.|...+
T Consensus 405 ~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 405 DTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred eCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 6 45799999999999999999999999999999999998543
No 8
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=3e-32 Score=321.11 Aligned_cols=265 Identities=20% Similarity=0.348 Sum_probs=206.5
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccC------------CCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKF------------GALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDF 81 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~Fskf------------G~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I 81 (957)
....+..++|||+|||+++|+++|++||..+ +.|.++.+.+++|||||+|.+.++|..|| .|+|..|
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 3446778999999999999999999999974 45677788899999999999999999999 7999999
Q ss_pred ccCcccccccCC--------------------------------CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEE
Q 002168 82 RGNPIKIEFARP--------------------------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129 (957)
Q Consensus 82 ~Gr~I~V~~A~p--------------------------------~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkI 129 (957)
.|+.|+|..... ....++|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 999999864321 112468999999999999999999999999999999
Q ss_pred eec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccc
Q 002168 130 LKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAY 203 (957)
Q Consensus 130 lrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 203 (957)
+++ +|+|||+|.+.++|..|++.|||..|+|+.|.|.++............ .. .... ......
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~--~~-~~~~-------~~~~~~- 396 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTS--NG-MAPV-------TLLAKA- 396 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccc--cc-cccc-------cccccc-
Confidence 876 589999999999999999999999999999999998654321111000 00 0000 000000
Q ss_pred cCCCCCCcCCCCCCCCCceEEEecCCCCC---------CCCHHHHHHHHhhcCCeEEEEEeCC---------CcEEEEEe
Q 002168 204 KRSHPQSSVGRNRDGPPSKILWVGYPPSV---------QMDEQMLHNAMILFGEIERIKSYPS---------RNYSFVEF 265 (957)
Q Consensus 204 ~~~~~~~~~~~~~~~~ps~VL~Vgnpps~---------~vtEeeLr~~Fs~fG~V~~VkI~~s---------rG~AFVeF 265 (957)
.. .........++++|++.|.... ....++|+++|++||.|++|+|.+. +|+|||+|
T Consensus 397 ---~~--~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F 471 (509)
T TIGR01642 397 ---LS--QSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEY 471 (509)
T ss_pred ---ch--hhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEE
Confidence 00 0000112346788888776421 0112579999999999999999742 58999999
Q ss_pred CCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 002168 266 RSVDEARRAKEGLQGRLFNDPRITIMFSSS 295 (957)
Q Consensus 266 ~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~ 295 (957)
.++++|.+|+..|||+.|+|+.|.|.|...
T Consensus 472 ~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 472 ADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 999999999999999999999999999753
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.2e-31 Score=314.64 Aligned_cols=269 Identities=28% Similarity=0.414 Sum_probs=206.9
Q ss_pred CCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecC--CCcEEEEEeCCHHHHHHHHHHhcCCccccC--cccccccCC--
Q 002168 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS--SRSFAFVYFKRVEDAKAAKDALQGSDFRGN--PIKIEFARP-- 93 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~gr--skGyAFVeF~s~edA~~AL~~Lng~~I~Gr--~I~V~~A~p-- 93 (957)
..+|||+||++.+|+++|+++|+.||.|.+|++.+ .+++|||+|.+.++|.+|++.|||..|.|. .|+|.|+++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 34799999999999999999999999999998533 346999999999999999999999999764 666666542
Q ss_pred --------------------------------------------------------------------------------
Q 002168 94 -------------------------------------------------------------------------------- 93 (957)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (957)
T Consensus 176 l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (481)
T TIGR01649 176 LNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAY 255 (481)
T ss_pred ceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccc
Confidence
Q ss_pred ----------------CCCCCceEEcCCCc-cCCHHHHHHhhcccCCEeEEEEeec-CCceEEEeCCHHHHHHHHHHhCC
Q 002168 94 ----------------AKPSKHLWVGGISQ-TVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNING 155 (957)
Q Consensus 94 ----------------~~~sr~LyVgNLP~-~vTeedL~elFskfG~I~~VkIlrd-rG~AFVeF~t~edA~kAIe~LnG 155 (957)
...+++|||+||+. .+|+++|+++|+.||.|.+|+++++ +|+|||+|.+.++|..|++.|||
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng 335 (481)
T TIGR01649 256 EAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNG 335 (481)
T ss_pred cccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 01235899999997 6999999999999999999999987 58999999999999999999999
Q ss_pred ceeCCeEEEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCC
Q 002168 156 RQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMD 235 (957)
Q Consensus 156 ~~i~Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vt 235 (957)
..|.|+.|+|.+++.............+... .+.. +.... ..+..............++++|+|.|++. .++
T Consensus 336 ~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~-~~~d----~~~~~--~~r~~~~~~~~~~~~~~ps~~L~v~NLp~-~~t 407 (481)
T TIGR01649 336 VKLFGKPLRVCPSKQQNVQPPREGQLDDGLT-SYKD----YSSSR--NHRFKKPGSANKNNIQPPSATLHLSNIPL-SVS 407 (481)
T ss_pred CEECCceEEEEEcccccccCCCCCcCcCCCc-cccc----ccCCc--cccCCCcccccccccCCCCcEEEEecCCC-CCC
Confidence 9999999999998765322111000000000 0000 00000 00000000001111245677888888874 799
Q ss_pred HHHHHHHHhhcCC--eEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCCeeCCCe------EEEEeecCC
Q 002168 236 EQMLHNAMILFGE--IERIKSYPS----RNYSFVEFRSVDEARRAKEGLQGRLFNDPR------ITIMFSSSE 296 (957)
Q Consensus 236 EeeLr~~Fs~fG~--V~~VkI~~s----rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~------I~V~~A~~~ 296 (957)
+++|+++|+.||. |+.|++++. +++|||+|.+.++|.+|+..|||..|.|+. |+|+|++.+
T Consensus 408 ee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 408 EEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 9999999999998 889998754 489999999999999999999999999985 999999754
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.9e-31 Score=272.61 Aligned_cols=278 Identities=27% Similarity=0.439 Sum_probs=213.0
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
....++|.|.=||..+|++||+.+|...|+|++++ ++-+.||+||.|-+++||++|+..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34567899999999999999999999999999988 566889999999999999999999999999999999999
Q ss_pred cCCCCC---CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCC-
Q 002168 91 ARPAKP---SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGG- 160 (957)
Q Consensus 91 A~p~~~---sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~G- 160 (957)
++|... ..+|||.+||+.+|..||+++|+.||.|...+|+.| ||.+||.|...++|+.||+.|||.+-.|
T Consensus 118 ARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 118 ARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred ccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 998654 579999999999999999999999999988888876 6789999999999999999999997765
Q ss_pred -eEEEEEEccCCccccCCCCCCC--CCCCCCccCCCC----CC-----CCCcccccCCC---------CCCcCCCCCCCC
Q 002168 161 -EQLRVDFLRSQPSRREQWPNSH--DARDGPIIGRGT----GF-----SDNHSAYKRSH---------PQSSVGRNRDGP 219 (957)
Q Consensus 161 -r~I~V~~ak~k~~rr~~~~~~~--~~r~~~~~~~~~----~~-----~~~~~~~~~~~---------~~~~~~~~~~~~ 219 (957)
..|.|+|+.....+........ ......+.+.-. .+ ........+.. ............
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 6899999986653322111100 000000000000 00 00000000000 000001111222
Q ss_pred CceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 002168 220 PSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 293 (957)
Q Consensus 220 ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~------srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A 293 (957)
.-++++.++.++ .+|..|+++|.+||.|..|++++ .||||||.+.+-++|..||..|||..+.++.|+|.|.
T Consensus 278 g~ciFvYNLspd--~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 278 GWCIFVYNLSPD--ADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred eeEEEEEecCCC--chHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 234444555554 89999999999999999999984 5899999999999999999999999999999999998
Q ss_pred cCC
Q 002168 294 SSE 296 (957)
Q Consensus 294 ~~~ 296 (957)
.++
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 664
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=4.1e-30 Score=302.90 Aligned_cols=156 Identities=25% Similarity=0.467 Sum_probs=142.6
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
....++|||+||++++++++|+++|.+||+|.+|+ +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 35678999999999999999999999999999887 467899999999999999999999999999999999986
Q ss_pred cCC--------------CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHH
Q 002168 91 ARP--------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEAL 150 (957)
Q Consensus 91 A~p--------------~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAI 150 (957)
... ....++|||+||+.++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|+
T Consensus 184 p~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 184 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred cccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 532 123478999999999999999999999999999999876 589999999999999999
Q ss_pred HHhCCceeCCeEEEEEEccCCc
Q 002168 151 KNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 151 e~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
+.||+..++|+.|+|.++....
T Consensus 264 ~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 264 ASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHhCCCeeCCeEEEEEecCCCc
Confidence 9999999999999999988644
No 12
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9.7e-30 Score=265.11 Aligned_cols=223 Identities=25% Similarity=0.508 Sum_probs=184.7
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCC--
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA-- 94 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~-- 94 (957)
...-++|||+||..+|||+-|..+|++.|.|..+++. |+ +|+|.|+...
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i---------~~--------------------e~~v~wa~~p~n 53 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVI---------FD--------------------ELKVNWATAPGN 53 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceee---------hh--------------------hhccccccCccc
Confidence 3456899999999999999999999999999877632 22 4455554321
Q ss_pred ------CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeE
Q 002168 95 ------KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (957)
Q Consensus 95 ------~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~ 162 (957)
.....|||+.|...++.++|++.|.+||+|.++++++| |||+||.|.+.++|+.||..|||..|++|.
T Consensus 54 Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 54 QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 11346999999999999999999999999999999998 689999999999999999999999999999
Q ss_pred EEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHH
Q 002168 163 LRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNA 242 (957)
Q Consensus 163 I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~ 242 (957)
|+..|+..+........ ..+.+. -+.....++.+++++... .++|++|++.
T Consensus 134 IRTNWATRKp~e~n~~~--------------ltfdeV--------------~NQssp~NtsVY~G~I~~-~lte~~mr~~ 184 (321)
T KOG0148|consen 134 IRTNWATRKPSEMNGKP--------------LTFDEV--------------YNQSSPDNTSVYVGNIAS-GLTEDLMRQT 184 (321)
T ss_pred eeccccccCccccCCCC--------------ccHHHH--------------hccCCCCCceEEeCCcCc-cccHHHHHHh
Confidence 99999988762211100 111111 112334456777887776 5999999999
Q ss_pred HhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 002168 243 MILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 297 (957)
Q Consensus 243 Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~ 297 (957)
|+.||.|.+|++++.+||+||+|++.|.|.+||..+||.++.|..|++.|-+...
T Consensus 185 Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 185 FSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred cccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 9999999999999999999999999999999999999999999999999987654
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.7e-27 Score=266.57 Aligned_cols=275 Identities=23% Similarity=0.373 Sum_probs=208.0
Q ss_pred CCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
..||||++||++++.++|.++|+.+|+|..+. ...++||+||.|.-.||+.+|+...++..+.|+.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 48999999999999999999999999998655 345799999999999999999999999999999999988752
Q ss_pred -----------------------------CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEE
Q 002168 94 -----------------------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVE 139 (957)
Q Consensus 94 -----------------------------~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVe 139 (957)
..+..+|.|+|||+.+.+.+|+.+|+.||.|.+|.|.+. .|||||.
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 111457999999999999999999999999999999876 3789999
Q ss_pred eCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccccCCC---------------CCCCCCCCCC--------c---cCC-
Q 002168 140 YSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQW---------------PNSHDARDGP--------I---IGR- 192 (957)
Q Consensus 140 F~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~rr~~~---------------~~~~~~r~~~--------~---~~~- 192 (957)
|....+|..|++.+|+..|.||.|.|+|+-.+..-.... ....+...+. . ...
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe 244 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEE 244 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccccc
Confidence 999999999999999999999999999998664321100 0000000000 0 000
Q ss_pred CC-----------------CCCCCc-ccccCCCCCCcCC-CCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEE
Q 002168 193 GT-----------------GFSDNH-SAYKRSHPQSSVG-RNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIK 253 (957)
Q Consensus 193 ~~-----------------~~~~~~-~~~~~~~~~~~~~-~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~Vk 253 (957)
.. ...+.. ++...+....... -.......+++||.|++ |+++|++|.++|++||+|..+.
T Consensus 245 ~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~-fD~tEEel~~~fskFG~v~ya~ 323 (678)
T KOG0127|consen 245 TDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLP-FDTTEEELKEHFSKFGEVKYAI 323 (678)
T ss_pred ccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCC-ccccHHHHHHHHHhhccceeEE
Confidence 00 000000 0000000000000 01223334678888877 6899999999999999999888
Q ss_pred Ee------CCCcEEEEEeCCHHHHHHHHHHh-----CC-CeeCCCeEEEEeecC
Q 002168 254 SY------PSRNYSFVEFRSVDEARRAKEGL-----QG-RLFNDPRITIMFSSS 295 (957)
Q Consensus 254 I~------~srG~AFVeF~T~edA~~AIe~L-----NG-k~f~Gr~I~V~~A~~ 295 (957)
+. .++|.|||.|.+..+|.++|+.. .| ..+.|+.|.|..+-.
T Consensus 324 iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 324 IVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred EEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccc
Confidence 86 46899999999999999999876 34 678999999999844
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3e-27 Score=259.07 Aligned_cols=159 Identities=31% Similarity=0.574 Sum_probs=141.7
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCc-cccC--c
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSD-FRGN--P 85 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~-I~Gr--~ 85 (957)
....+.-+|||+-||.+++|.||+++|++||.|.+|. ++.++|||||.|.+.++|.+|+..|++.. |.|. .
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 3346778999999999999999999999999998877 56689999999999999999999998865 5554 8
Q ss_pred ccccccCCCCC----CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCc
Q 002168 86 IKIEFARPAKP----SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGR 156 (957)
Q Consensus 86 I~V~~A~p~~~----sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~ 156 (957)
|+|++++.++. .++||||-|++.+||.||+++|++||.|++|.|+++ ||+|||.|.+.|.|..||+.|||.
T Consensus 109 vqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 109 VQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred eeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 89999975443 589999999999999999999999999999999997 799999999999999999999998
Q ss_pred -eeCC--eEEEEEEccCCcc
Q 002168 157 -QIGG--EQLRVDFLRSQPS 173 (957)
Q Consensus 157 -~i~G--r~I~V~~ak~k~~ 173 (957)
.+.| ..|.|+|+..++.
T Consensus 189 ~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred eeeccCCCceEEEecccCCC
Confidence 6666 6899999987664
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7.4e-27 Score=263.96 Aligned_cols=232 Identities=23% Similarity=0.464 Sum_probs=203.9
Q ss_pred CEEEEccCCCCCcHHHHHHHhccCCCeeEEE----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCCCC
Q 002168 21 SNLWVGNLSADTTDADLKELFGKFGALDKVT----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKP 96 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~e~FskfG~I~~V~----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~~~ 96 (957)
..|||| +++||.+|.++|+.+|+|.+|+ . .+.|||||.|.+.+||.+|++++|...|+|+.|+|+|+..+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 478998 9999999999999999999888 5 4999999999999999999999999999999999999965444
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
. |||.||+++++.++|.++|+.||.|.+|++..+ +|+ ||+|+++++|++|++.+||..+.|++|.|.....+.
T Consensus 78 ~--~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 L--VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred e--eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 4 999999999999999999999999999999988 467 999999999999999999999999999999877665
Q ss_pred cccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEE
Q 002168 173 SRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERI 252 (957)
Q Consensus 173 ~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~V 252 (957)
.+.... .. .....+++++++... ++++++|.++|..+|.|..+
T Consensus 155 er~~~~----------------------------------~~-~~~~~t~v~vk~~~~--~~~~~~l~~~f~~~g~i~s~ 197 (369)
T KOG0123|consen 155 EREAPL----------------------------------GE-YKKRFTNVYVKNLEE--DSTDEELKDLFSAYGSITSV 197 (369)
T ss_pred hhcccc----------------------------------cc-hhhhhhhhheecccc--ccchHHHHHhhcccCcceEE
Confidence 433211 00 123345666666653 58999999999999999999
Q ss_pred EEeC-----CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 253 KSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 253 kI~~-----srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
.+++ +++|+||.|.+.++|..|++.|||..+.|+.+-|.-+..+
T Consensus 198 ~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 198 AVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred EEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccc
Confidence 9974 5899999999999999999999999999999999888663
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=7.7e-26 Score=254.25 Aligned_cols=158 Identities=30% Similarity=0.487 Sum_probs=144.3
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
.+....++|||+|||+++||++|+++|+.||+|.+|+ +++++|||||+|.++++|++|+++|++..|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 4566899999999999999999999999999998876 4567899999999999999999999999999999999
Q ss_pred cccCCC---CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeC
Q 002168 89 EFARPA---KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIG 159 (957)
Q Consensus 89 ~~A~p~---~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~ 159 (957)
.++++. ....+|||+|||..+|+++|+++|++||.|+.|+|++++ ++|||+|.+.++|++||+.||+..+.
T Consensus 182 ~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 182 SYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred ecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 998763 346789999999999999999999999999999999874 78999999999999999999999886
Q ss_pred C--eEEEEEEccCCc
Q 002168 160 G--EQLRVDFLRSQP 172 (957)
Q Consensus 160 G--r~I~V~~ak~k~ 172 (957)
+ +.|+|.++....
T Consensus 262 g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 262 GGSQPLTVRLAEEHG 276 (346)
T ss_pred CCceeEEEEECCccc
Confidence 5 799999987654
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.91 E-value=4.4e-23 Score=232.05 Aligned_cols=159 Identities=23% Similarity=0.365 Sum_probs=136.5
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||.++|+++|+++|+.||.|++|+|+++ +++|||+|.++++|++|++.||+..+.++.|+|.|
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 456789999999999999999999999999999999877 37899999999999999999999999999999998
Q ss_pred ccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcC
Q 002168 168 LRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFG 247 (957)
Q Consensus 168 ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG 247 (957)
++.... ... .+.|||++++. .++|++|+++|++||
T Consensus 184 a~p~~~-------------------------------------------~~~-~~~lfV~nLp~-~vtee~L~~~F~~fG 218 (346)
T TIGR01659 184 ARPGGE-------------------------------------------SIK-DTNLYVTNLPR-TITDDQLDTIFGKYG 218 (346)
T ss_pred cccccc-------------------------------------------ccc-cceeEEeCCCC-cccHHHHHHHHHhcC
Confidence 754210 001 22355666553 599999999999999
Q ss_pred CeEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCC--CeEEEEeecCCC
Q 002168 248 EIERIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFND--PRITIMFSSSEL 297 (957)
Q Consensus 248 ~V~~VkI~~s------rG~AFVeF~T~edA~~AIe~LNGk~f~G--r~I~V~~A~~~~ 297 (957)
+|++++|+++ |+||||+|.+.++|++||+.||+..|.| +.|+|.+++...
T Consensus 219 ~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 219 QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 9999999743 5899999999999999999999999876 689999987653
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=6.1e-24 Score=240.34 Aligned_cols=246 Identities=24% Similarity=0.440 Sum_probs=204.3
Q ss_pred EEEccCCCCCcHHHHHHHhccCCCeeEEE----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCC----
Q 002168 23 LWVGNLSADTTDADLKELFGKFGALDKVT----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA---- 94 (957)
Q Consensus 23 LfVgNLP~svTE~dL~e~FskfG~I~~V~----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~---- 94 (957)
|||.||+.+++..+|.++|+.||+|++|+ ..-++|| ||+|.++++|.+|++.+||..+.|++|.|....+.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 99999999999999999999999999999 2228999 99999999999999999999999999999665431
Q ss_pred -------CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeE
Q 002168 95 -------KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (957)
Q Consensus 95 -------~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~ 162 (957)
..-..++|.|++.++++++|.++|..+|.|.++.++.+ ++++||.|.+.++|..|++.|++..+.+..
T Consensus 158 ~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~ 237 (369)
T KOG0123|consen 158 APLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKE 237 (369)
T ss_pred ccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccc
Confidence 22457999999999999999999999999999999976 589999999999999999999999999999
Q ss_pred EEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHH
Q 002168 163 LRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNA 242 (957)
Q Consensus 163 I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~ 242 (957)
+.|..+..+..+......... ..............+++.+... .++++.|++.
T Consensus 238 ~~V~~aqkk~e~~~~l~~~~~--------------------------~~~~~~~~~~~~~nl~vknld~-~~~~e~L~~~ 290 (369)
T KOG0123|consen 238 LYVGRAQKKSEREAELKRKFE--------------------------QEFAKRSVSLQGANLYVKNLDE-TLSDEKLRKI 290 (369)
T ss_pred eeecccccchhhHHHHhhhhH--------------------------hhhhhccccccccccccccCcc-ccchhHHHHH
Confidence 999987763322211100000 0001111233345566666554 5999999999
Q ss_pred HhhcCCeEEEEEe-----CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 243 MILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 243 Fs~fG~V~~VkI~-----~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
|+.||+|..++++ +++||+||+|.+.++|.+|+..+||..+.++.|.|.++...
T Consensus 291 f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~ 349 (369)
T KOG0123|consen 291 FSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRK 349 (369)
T ss_pred HhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhh
Confidence 9999999999987 46899999999999999999999999999999999888643
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=6.6e-24 Score=227.94 Aligned_cols=153 Identities=25% Similarity=0.484 Sum_probs=141.2
Q ss_pred CCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
.|+||||.|.+++.|+.|+..|..||+|.+|. +++.||||||+|+-+|.|..|++.|||..++||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 58999999999999999999999999999998 788999999999999999999999999999999999975431
Q ss_pred --------------CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHh
Q 002168 94 --------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNI 153 (957)
Q Consensus 94 --------------~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~L 153 (957)
.+.-++|||..+-++.+++||+..|+.||+|..|.+-++ +||+||+|.+..+-..||..|
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 344679999999999999999999999999999999876 689999999999999999999
Q ss_pred CCceeCCeEEEEEEccCCc
Q 002168 154 NGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 154 nG~~i~Gr~I~V~~ak~k~ 172 (957)
|-..++|.-|+|..+....
T Consensus 273 NlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred chhhcccceEecccccCCC
Confidence 9999999999998765443
No 20
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=2.8e-23 Score=217.01 Aligned_cols=156 Identities=27% Similarity=0.513 Sum_probs=145.9
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
.+.-..|||+.|...++.++|++.|.+||+|.+++ ++++|||+||.|.+.+||+.||..|||.-|.+|.|+..|
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 34466899999999999999999999999997655 789999999999999999999999999999999999999
Q ss_pred cCC-------------------CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHH
Q 002168 91 ARP-------------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALK 151 (957)
Q Consensus 91 A~p-------------------~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe 151 (957)
+.+ ...+++||||||+..+|+++|++.|+.||.|.+|++.+++||+||.|++.|+|..||.
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIV 218 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHH
Confidence 964 3457899999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceeCCeEEEEEEccCCc
Q 002168 152 NINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 152 ~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
.+|++.|.|..+++.|-+...
T Consensus 219 ~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 219 QMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred HhcCceeCceEEEEeccccCC
Confidence 999999999999999988654
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=1.3e-22 Score=234.55 Aligned_cols=247 Identities=24% Similarity=0.397 Sum_probs=205.9
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC--
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP-- 93 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p-- 93 (957)
..+..+.++|+|||..+..++|...|..||.|..|...+..--|+|.|.+..+|.+|++.|....+....+.+.|+..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dv 460 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDV 460 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhh
Confidence 457789999999999999999999999999999998776666799999999999999999999998888888888631
Q ss_pred ------------------------------------C---------------CCCCceEEcCCCccCCHHHHHHhhcccC
Q 002168 94 ------------------------------------A---------------KPSKHLWVGGISQTVSKEELEEGFLKFG 122 (957)
Q Consensus 94 ------------------------------------~---------------~~sr~LyVgNLP~~vTeedL~elFskfG 122 (957)
. ...++|||.||.++.|.++|...|.+.|
T Consensus 461 f~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G 540 (725)
T KOG0110|consen 461 FTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQG 540 (725)
T ss_pred ccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcC
Confidence 0 0012499999999999999999999999
Q ss_pred CEeEEEEeecC---------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccccCCCCCCCCCCCCCccCCC
Q 002168 123 NIEDFKFLKDG---------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRG 193 (957)
Q Consensus 123 ~I~~VkIlrdr---------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~ 193 (957)
.|.++.|...+ |+|||+|.+.++|+.|++.|+|+.+.|..|.|.++..+......
T Consensus 541 ~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g---------------- 604 (725)
T KOG0110|consen 541 TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG---------------- 604 (725)
T ss_pred eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc----------------
Confidence 99999877553 89999999999999999999999999999999998722110000
Q ss_pred CCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeC------CCcEEEEEeCC
Q 002168 194 TGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRS 267 (957)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~------srG~AFVeF~T 267 (957)
.........++|+ |.|++ |..+..+|+++|..||.|..|+|.+ ++|||||+|-+
T Consensus 605 ------------------K~~~~kk~~tKIl-VRNip-FeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 605 ------------------KKKSKKKKGTKIL-VRNIP-FEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred ------------------cccccccccceee-eeccc-hHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 0000011124444 54544 5699999999999999999999974 48999999999
Q ss_pred HHHHHHHHHHhCCCeeCCCeEEEEeecCCCC
Q 002168 268 VDEARRAKEGLQGRLFNDPRITIMFSSSELA 298 (957)
Q Consensus 268 ~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~~ 298 (957)
..+|.+|++.|.+..+.|++|.+.|+++...
T Consensus 665 ~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 665 PREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cHHHHHHHHhhcccceechhhheehhccchH
Confidence 9999999999999999999999999977543
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.89 E-value=2.2e-22 Score=226.41 Aligned_cols=155 Identities=26% Similarity=0.468 Sum_probs=137.0
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccC--ccccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGN--PIKIE 89 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr--~I~V~ 89 (957)
...++|||+|||.++++++|+++|++||.|..++ .+.++|||||+|.+.++|.+|++.|+|..+.|. .|.|.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 4577999999999999999999999999998766 245789999999999999999999999998774 56776
Q ss_pred ccCCCC--------------------------------------------------------------------------
Q 002168 90 FARPAK-------------------------------------------------------------------------- 95 (957)
Q Consensus 90 ~A~p~~-------------------------------------------------------------------------- 95 (957)
++....
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 653111
Q ss_pred ---------------------CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHH
Q 002168 96 ---------------------PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAE 148 (957)
Q Consensus 96 ---------------------~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~k 148 (957)
..++|||+|||.++++++|+++|++||.|++++|+++ +|+|||+|.+.++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0125999999999999999999999999999999987 6899999999999999
Q ss_pred HHHHhCCceeCCeEEEEEEccCCc
Q 002168 149 ALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 149 AIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
|++.|||..|.|+.|+|.|...+.
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCC
Confidence 999999999999999999987664
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.88 E-value=7.1e-22 Score=233.52 Aligned_cols=168 Identities=20% Similarity=0.333 Sum_probs=137.7
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
...++|||+||++++++++|+++|++||.|.+|++++| +|||||+|.+.++|.+|++.|||..+.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34689999999999999999999999999999999876 689999999999999999999999999999999854
Q ss_pred cCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCC
Q 002168 169 RSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGE 248 (957)
Q Consensus 169 k~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~ 248 (957)
......... . .... ......+.|||++++. ++++++|+++|+.||.
T Consensus 185 ~~~p~a~~~----------------------~----------~~~~-~~~~~~~rLfVgnLp~-~vteedLk~lFs~FG~ 230 (612)
T TIGR01645 185 SNMPQAQPI----------------------I----------DMVQ-EEAKKFNRIYVASVHP-DLSETDIKSVFEAFGE 230 (612)
T ss_pred ccccccccc----------------------c----------cccc-ccccccceEEeecCCC-CCCHHHHHHHHhhcCC
Confidence 322110000 0 0000 0111234566666653 5999999999999999
Q ss_pred eEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 249 IERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 249 V~~VkI~~------srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
|+++++.+ +||||||+|.+.++|.+|++.|||..|+|+.|+|.++..+
T Consensus 231 I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 231 IVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred eeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 99999863 5899999999999999999999999999999999998754
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.87 E-value=1.7e-21 Score=229.89 Aligned_cols=212 Identities=21% Similarity=0.324 Sum_probs=159.7
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCC-eeEEE-------ecCCCcEEEEEeCCHHHHHHHHHHhcC--CccccCccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGA-LDKVT-------TYSSRSFAFVYFKRVEDAKAAKDALQG--SDFRGNPIK 87 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~-I~~V~-------~grskGyAFVeF~s~edA~~AL~~Lng--~~I~Gr~I~ 87 (957)
.+.++|||+|||.++|+++|.+.|++++. +.+++ .++++|||||+|.+.++|..|++.|+. ..+.|+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 45789999999999999999999999864 33333 246799999999999999999988864 357899999
Q ss_pred ccccCCCC--------CCCceEEcCCCccCCHHHHHHhhccc--CCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCce
Q 002168 88 IEFARPAK--------PSKHLWVGGISQTVSKEELEEGFLKF--GNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQ 157 (957)
Q Consensus 88 V~~A~p~~--------~sr~LyVgNLP~~vTeedL~elFskf--G~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~ 157 (957)
|.|+.+.. ..++|||+||+.++++++|+++|++| |.|++|++++ ++|||+|.+.++|.+|++.||+..
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--gfAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--DYAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--CeEEEEeCCHHHHHHHHHHhCCCE
Confidence 99997633 24689999999999999999999999 9999998764 599999999999999999999999
Q ss_pred eCCeEEEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHH
Q 002168 158 IGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQ 237 (957)
Q Consensus 158 i~Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEe 237 (957)
|.|+.|+|.|++........ ....... .. ..... ... .............+++++.+ +..+++
T Consensus 294 i~Gr~I~V~~Akp~~~~~~~--~~~rg~g-------g~-~~~~~-----~~~-~~~g~~~sp~s~~~~~g~~~-~~~~~~ 356 (578)
T TIGR01648 294 LEGSEIEVTLAKPVDKKSYV--RYTRGTG-------GR-GKERQ-----AAR-QSLGQVYDPASRSLAYEDYY-YHPPYA 356 (578)
T ss_pred ECCEEEEEEEccCCCccccc--ccccccC-------CC-ccccc-----ccc-cccCcccCcccccccccccc-cccccc
Confidence 99999999999765422100 0000000 00 00000 000 00111234456667777765 578888
Q ss_pred HHHHHHhhcCC
Q 002168 238 MLHNAMILFGE 248 (957)
Q Consensus 238 eLr~~Fs~fG~ 248 (957)
.+.++|...|.
T Consensus 357 ~~~~~f~~~g~ 367 (578)
T TIGR01648 357 PSLHFPRMPGP 367 (578)
T ss_pred chhhccccCcc
Confidence 99999998875
No 25
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=1.3e-21 Score=221.38 Aligned_cols=278 Identities=21% Similarity=0.308 Sum_probs=203.7
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
.+.-++||+--|...+++.||.+||+.+|.|.+|. ..+++|-|||+|.+.+..-.|| .|.|..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 46678999999999999999999999999999887 5678999999999999999999 9999999999999977
Q ss_pred cCCC-----------------CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHH
Q 002168 91 ARPA-----------------KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAA 147 (957)
Q Consensus 91 A~p~-----------------~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~ 147 (957)
...+ .+...||||||-+++++++|+.+|+.||.|+.|.+.+| +|||||+|.+.++|+
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 5321 11234999999999999999999999999999999877 689999999999999
Q ss_pred HHHHHhCCceeCCeEEEEEEccCCccccCCCCCCCCCCC---CCccCCCCC-------------CCCC---------ccc
Q 002168 148 EALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARD---GPIIGRGTG-------------FSDN---------HSA 202 (957)
Q Consensus 148 kAIe~LnG~~i~Gr~I~V~~ak~k~~rr~~~~~~~~~r~---~~~~~~~~~-------------~~~~---------~~~ 202 (957)
+|++.|||..+-|+.|+|.................+... ..+.-...+ .... ..+
T Consensus 335 ~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~ 414 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAK 414 (549)
T ss_pred HHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccc
Confidence 999999999999999999765543322221111111110 000000000 0000 000
Q ss_pred ccCCCCCCcC---CCCCCC-------CCceEEEecCCCCC-CCC--------HHHHHHHHhhcCCeEEEEEeCCC-cEEE
Q 002168 203 YKRSHPQSSV---GRNRDG-------PPSKILWVGYPPSV-QMD--------EQMLHNAMILFGEIERIKSYPSR-NYSF 262 (957)
Q Consensus 203 ~~~~~~~~~~---~~~~~~-------~ps~VL~Vgnpps~-~vt--------EeeLr~~Fs~fG~V~~VkI~~sr-G~AF 262 (957)
.......... ...... .++.|+.+.|.... ..| .++|.+.+.+||.|.+|.+.+.. |+.|
T Consensus 415 ~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VY 494 (549)
T KOG0147|consen 415 LASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVY 494 (549)
T ss_pred cchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEE
Confidence 0000000000 000111 45566666554221 111 25778888999999999998655 9999
Q ss_pred EEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 002168 263 VEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 295 (957)
Q Consensus 263 VeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~ 295 (957)
|.|.+.++|..|+..|||++|.|+.|++.|-..
T Consensus 495 vrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 495 VRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred EecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 999999999999999999999999999999743
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.86 E-value=1.1e-20 Score=220.34 Aligned_cols=168 Identities=24% Similarity=0.408 Sum_probs=140.2
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+|| .|+|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 456789999999999999999999999999999999986 579999999999999999 5999999999999998
Q ss_pred ccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcC
Q 002168 168 LRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFG 247 (957)
Q Consensus 168 ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG 247 (957)
+............ . . .......+.|||++++. .+++++|+++|+.||
T Consensus 165 ~~~~~~~~~~~~~--------------------------~-----~-~~~~p~~~~l~v~nl~~-~~te~~l~~~f~~~G 211 (457)
T TIGR01622 165 SQAEKNRAAKAAT--------------------------H-----Q-PGDIPNFLKLYVGNLHF-NITEQELRQIFEPFG 211 (457)
T ss_pred cchhhhhhhhccc--------------------------c-----c-CCCCCCCCEEEEcCCCC-CCCHHHHHHHHHhcC
Confidence 7544322111000 0 0 00111256777777774 699999999999999
Q ss_pred CeEEEEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 002168 248 EIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 295 (957)
Q Consensus 248 ~V~~VkI~------~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~ 295 (957)
.|..|.+. +++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+..
T Consensus 212 ~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 212 DIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 99999987 4579999999999999999999999999999999999973
No 27
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.85 E-value=1.6e-19 Score=197.47 Aligned_cols=283 Identities=19% Similarity=0.273 Sum_probs=200.7
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCC--ccccCcccccccC
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGS--DFRGNPIKIEFAR 92 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~--~I~Gr~I~V~~A~ 92 (957)
....+++.|.++|||.+++|+||..++..||.|..+.+.+.+..|||+|++.+.|..-+...... .+.|+.|.|.|+.
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn 102 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSN 102 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccchhhhhhhcchhhhhheeecccccCccccCcceeehhhh
Confidence 44568999999999999999999999999999999998888899999999999998855333322 2567777776652
Q ss_pred C-----------------------------------C------C--CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEE
Q 002168 93 P-----------------------------------A------K--PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKF 129 (957)
Q Consensus 93 p-----------------------------------~------~--~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkI 129 (957)
- . . .--+++|+|+-+.++-+-|..+|++||.|..|.-
T Consensus 103 ~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiT 182 (492)
T KOG1190|consen 103 HSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIIT 182 (492)
T ss_pred HHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEE
Confidence 0 0 0 1125778999999999999999999999988765
Q ss_pred e-ecCCc-eEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEEccCCcc---------ccCCCCCCCCCCCCC-----ccC
Q 002168 130 L-KDGNT-AFVEYSRLEDAAEALKNINGRQIG--GEQLRVDFLRSQPS---------RREQWPNSHDARDGP-----IIG 191 (957)
Q Consensus 130 l-rdrG~-AFVeF~t~edA~kAIe~LnG~~i~--Gr~I~V~~ak~k~~---------rr~~~~~~~~~r~~~-----~~~ 191 (957)
. ++.+| |.|+|.+.+.|..|...|+|..|. .|.|+|+|++-... |....+........+ ...
T Consensus 183 F~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~a 262 (492)
T KOG1190|consen 183 FTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAA 262 (492)
T ss_pred EecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhc
Confidence 4 44555 999999999999999999999763 58899998774321 111111110000000 000
Q ss_pred CCCCCCCCcccccC----CCCCCcCCCCCCCC--CceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCC-CcEEEEE
Q 002168 192 RGTGFSDNHSAYKR----SHPQSSVGRNRDGP--PSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS-RNYSFVE 264 (957)
Q Consensus 192 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~s-rG~AFVe 264 (957)
. .+......+... .............. .+.+|.+.++....+|.+.|..+|.-||+|.+|+|+.. +.-|+|+
T Consensus 263 a-~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQ 341 (492)
T KOG1190|consen 263 A-FGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQ 341 (492)
T ss_pred c-ccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeee
Confidence 0 000000000000 00000000011111 14666666666668999999999999999999999854 4689999
Q ss_pred eCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCC
Q 002168 265 FRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 298 (957)
Q Consensus 265 F~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~~ 298 (957)
|.+...|.-|++.|+|..|.||+|+|.+++-...
T Consensus 342 msd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 342 MSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred ecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 9999999999999999999999999999976544
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=3.5e-20 Score=203.85 Aligned_cols=162 Identities=27% Similarity=0.474 Sum_probs=137.4
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCce-eCC--eEE
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQ-IGG--EQL 163 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~-i~G--r~I 163 (957)
++...-++|||-||..++|+||+++|++||.|.+|.|++|| |+|||.|.+.++|.+|+..||..+ +-| ..|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 44556799999999999999999999999999999999994 889999999999999999998874 444 678
Q ss_pred EEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHH
Q 002168 164 RVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAM 243 (957)
Q Consensus 164 ~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~F 243 (957)
.|+|+..+.++. ...+.|||+.+.. .++|.||+++|
T Consensus 110 qvk~Ad~E~er~-------------------------------------------~~e~KLFvg~lsK-~~te~evr~iF 145 (510)
T KOG0144|consen 110 QVKYADGERERI-------------------------------------------VEERKLFVGMLSK-QCTENEVREIF 145 (510)
T ss_pred eecccchhhhcc-------------------------------------------ccchhhhhhhccc-cccHHHHHHHH
Confidence 888876554221 1234577877775 79999999999
Q ss_pred hhcCCeEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCCe-eCC--CeEEEEeecCCCC
Q 002168 244 ILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRL-FND--PRITIMFSSSELA 298 (957)
Q Consensus 244 s~fG~V~~VkI~~-----srG~AFVeF~T~edA~~AIe~LNGk~-f~G--r~I~V~~A~~~~~ 298 (957)
++||.|++|.|++ +||||||+|.+.|.|..||+.|||.. +.| .+|.|.|+..+..
T Consensus 146 s~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 146 SRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred HhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 9999999999985 69999999999999999999999985 555 5899999966543
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.82 E-value=1.1e-19 Score=214.53 Aligned_cols=154 Identities=24% Similarity=0.414 Sum_probs=133.9
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
...++|||+|||..+|+++|+++|..||.|..+. ++.++|||||+|.+.++|..|++.|+|..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999998766 4668999999999999999999999999999999999887
Q ss_pred CC-------------------------------CCCCCceEEcCCCccC----------CHHHHHHhhcccCCEeEEEEe
Q 002168 92 RP-------------------------------AKPSKHLWVGGISQTV----------SKEELEEGFLKFGNIEDFKFL 130 (957)
Q Consensus 92 ~p-------------------------------~~~sr~LyVgNLP~~v----------TeedL~elFskfG~I~~VkIl 130 (957)
.. ..++++|+|.||...- ..++|+++|++||.|++|+|.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 31 1235678999986321 236799999999999999998
Q ss_pred ec---------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 131 KD---------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 131 rd---------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
++ .|+|||+|.+.++|.+|+..|||..|+|+.|.|.|....
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 65 378999999999999999999999999999999997643
No 30
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.6e-19 Score=199.72 Aligned_cols=156 Identities=27% Similarity=0.493 Sum_probs=139.1
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCC-eeEEE-------ecCCCcEEEEEeCCHHHHHHHHHHhcC--CccccCccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGA-LDKVT-------TYSSRSFAFVYFKRVEDAKAAKDALQG--SDFRGNPIK 87 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~-I~~V~-------~grskGyAFVeF~s~edA~~AL~~Lng--~~I~Gr~I~ 87 (957)
..+|+|||||||.+.++++|.+.|++.++ |++|+ ..++||||||+|.+...|.-|.++|-. ..+.|..+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 36899999999999999999999999985 55565 677999999999999999999887633 347999999
Q ss_pred ccccCCCCC--------CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeC
Q 002168 88 IEFARPAKP--------SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIG 159 (957)
Q Consensus 88 V~~A~p~~~--------sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~ 159 (957)
|.|+.+... -+.|||+||+.++|+|.|+++|++||.|+.|+.++| ||||+|.+.++|.+|++.+||+.|.
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--YaFVHf~eR~davkAm~~~ngkeld 319 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--YAFVHFAEREDAVKAMKETNGKELD 319 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--eeEEeecchHHHHHHHHHhcCceec
Confidence 999987433 367999999999999999999999999999999877 9999999999999999999999999
Q ss_pred CeEEEEEEccCCcccc
Q 002168 160 GEQLRVDFLRSQPSRR 175 (957)
Q Consensus 160 Gr~I~V~~ak~k~~rr 175 (957)
|..|.|.+++....++
T Consensus 320 G~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 320 GSPIEVTLAKPVDKKK 335 (506)
T ss_pred CceEEEEecCChhhhc
Confidence 9999999999775444
No 31
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.81 E-value=1.2e-17 Score=180.83 Aligned_cols=289 Identities=22% Similarity=0.310 Sum_probs=211.0
Q ss_pred CCCCCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHH--hcCCccccCccc
Q 002168 10 RAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDA--LQGSDFRGNPIK 87 (957)
Q Consensus 10 ~~~d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~--Lng~~I~Gr~I~ 87 (957)
.+.|.....++-.|.|++|-..++|.||.+.+++||.|.-|.....+..|.|+|++.+.|++|+.- .+...+.|....
T Consensus 21 ~~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 21 DNADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred cCCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhh
Confidence 344667788999999999999999999999999999999999899999999999999999999842 344557788777
Q ss_pred ccccCC----------CCCCCceE--EcCCCccCCHHHHHHhhcccCCEeEEEEeecCCc-eEEEeCCHHHHHHHHHHhC
Q 002168 88 IEFARP----------AKPSKHLW--VGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT-AFVEYSRLEDAAEALKNIN 154 (957)
Q Consensus 88 V~~A~p----------~~~sr~Ly--VgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~-AFVeF~t~edA~kAIe~Ln 154 (957)
+.++.. ...+..|. |-|--+.+|.+-|+.++...|+|..|.|.+..|. |.|||++.+.|++|.+.||
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcc
Confidence 777631 12233333 4566678999999999999999999999988664 9999999999999999999
Q ss_pred Ccee--CCeEEEEEEccCCccccC-----CC----CCC----CCCCC-------CCc-----cCCCCCCCCCccc----c
Q 002168 155 GRQI--GGEQLRVDFLRSQPSRRE-----QW----PNS----HDARD-------GPI-----IGRGTGFSDNHSA----Y 203 (957)
Q Consensus 155 G~~i--~Gr~I~V~~ak~k~~rr~-----~~----~~~----~~~r~-------~~~-----~~~~~~~~~~~~~----~ 203 (957)
|..| +.+.|+|+|++..+..-. .| +.. ...+. ... ...+.+.+.-... .
T Consensus 181 GADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p 260 (494)
T KOG1456|consen 181 GADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGP 260 (494)
T ss_pred cccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCC
Confidence 9977 468999999987652211 11 000 00000 000 0000000000000 0
Q ss_pred cC--CCCCCcCCCC-------CCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCCC-cEEEEEeCCHHHHHH
Q 002168 204 KR--SHPQSSVGRN-------RDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSR-NYSFVEFRSVDEARR 273 (957)
Q Consensus 204 ~~--~~~~~~~~~~-------~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~sr-G~AFVeF~T~edA~~ 273 (957)
.. +.......++ ....+..|+.|-.+....++-+.|.++|..||.|++|+.++.+ |.|.|++.+..+.++
T Consensus 261 ~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver 340 (494)
T KOG1456|consen 261 PHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVER 340 (494)
T ss_pred CCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHH
Confidence 00 0000000011 2334556666655555578999999999999999999999875 799999999999999
Q ss_pred HHHHhCCCeeCCCeEEEEeecCCCC
Q 002168 274 AKEGLQGRLFNDPRITIMFSSSELA 298 (957)
Q Consensus 274 AIe~LNGk~f~Gr~I~V~~A~~~~~ 298 (957)
|+..||+..+.|.+|.|++++..-.
T Consensus 341 ~v~hLnn~~lfG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 341 AVTHLNNIPLFGGKLNVCVSKQNFV 365 (494)
T ss_pred HHHHhccCccccceEEEeecccccc
Confidence 9999999999999999999976543
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.80 E-value=1.6e-19 Score=190.69 Aligned_cols=151 Identities=24% Similarity=0.445 Sum_probs=136.8
Q ss_pred CceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccccCC
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~rr~~ 177 (957)
.+|||||||..+++.+|+.+|++||+|.+|.|+++ +|||+.++...|+.||..||+.+|+|..|.|+-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs----- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS----- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--cceEEeecccccHHHHhhcccceecceEEEEEeccccC-----
Confidence 47999999999999999999999999999999865 99999999999999999999999999999999776552
Q ss_pred CCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCC
Q 002168 178 WPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS 257 (957)
Q Consensus 178 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~s 257 (957)
..++.++|+|+. +.++.+||+..|++||.|.+++|.
T Consensus 76 -----------------------------------------k~stkl~vgNis-~tctn~ElRa~fe~ygpviecdiv-- 111 (346)
T KOG0109|consen 76 -----------------------------------------KASTKLHVGNIS-PTCTNQELRAKFEKYGPVIECDIV-- 111 (346)
T ss_pred -----------------------------------------CCccccccCCCC-ccccCHHHhhhhcccCCceeeeee--
Confidence 124557787776 369999999999999999999999
Q ss_pred CcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCCC
Q 002168 258 RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 299 (957)
Q Consensus 258 rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~~p 299 (957)
|+|+||.|+-.++|..||+.|||++|.|++++|.++.++..+
T Consensus 112 kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 112 KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred cceeEEEEeeccchHHHHhcccccccccceeeeeeecccccc
Confidence 889999999999999999999999999999999999776543
No 33
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.80 E-value=1.1e-19 Score=191.79 Aligned_cols=148 Identities=30% Similarity=0.567 Sum_probs=138.0
Q ss_pred CEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCC-CCCCc
Q 002168 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA-KPSKH 99 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~-~~sr~ 99 (957)
.+|||||||..+++.+|+.+|.+||+|.++.+- |+||||..++...|..|++.|++..|+|..|.|+-++.+ +.+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~stk 80 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKASTK 80 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCCccc
Confidence 479999999999999999999999999988763 579999999999999999999999999999999998754 56789
Q ss_pred eEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 100 LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
|+||||.+.++..||+..|++||+|.+|+|.++ ++||+|...++|..|++.|+++.+.|+.++|..+.+.-
T Consensus 81 l~vgNis~tctn~ElRa~fe~ygpviecdivkd--y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 81 LHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred cccCCCCccccCHHHhhhhcccCCceeeeeecc--eeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 999999999999999999999999999999865 99999999999999999999999999999999887653
No 34
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.78 E-value=5.9e-19 Score=176.07 Aligned_cols=158 Identities=25% Similarity=0.443 Sum_probs=140.1
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
..-..+|||+||+..++++-|.++|-+.|+|.+|. +...+|||||+|.++|||.-|++-||...|.|++|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 45678999999999999999999999999999998 445789999999999999999999999999999999998
Q ss_pred cCCC----CCCCceEEcCCCccCCHHHHHHhhcccCCEeE-EEEeec------CCceEEEeCCHHHHHHHHHHhCCceeC
Q 002168 91 ARPA----KPSKHLWVGGISQTVSKEELEEGFLKFGNIED-FKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIG 159 (957)
Q Consensus 91 A~p~----~~sr~LyVgNLP~~vTeedL~elFskfG~I~~-VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~ 159 (957)
+... ....+|||+||.+.+++.-|++.|+.||.+.. -+++++ +++|||-|.+.+.+.+|++.+||..++
T Consensus 86 as~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 86 ASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred cccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 8632 23468999999999999999999999997654 355554 468999999999999999999999999
Q ss_pred CeEEEEEEccCCccc
Q 002168 160 GEQLRVDFLRSQPSR 174 (957)
Q Consensus 160 Gr~I~V~~ak~k~~r 174 (957)
++.|.|.++..+..+
T Consensus 166 nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 166 NRPITVSYAFKKDTK 180 (203)
T ss_pred CCceEEEEEEecCCC
Confidence 999999999876533
No 35
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.78 E-value=1.7e-18 Score=200.81 Aligned_cols=261 Identities=22% Similarity=0.325 Sum_probs=191.3
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC-
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP- 93 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p- 93 (957)
++..++..|||+|||+..+++||..+| |||.|...+.|.+|...++|..+.|+.|.|....+
T Consensus 222 e~i~etgrlf~RNLpyt~~eed~~~lf-----------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k 284 (725)
T KOG0110|consen 222 EDISETGRLFVRNLPYTSTEEDLLKLF-----------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEK 284 (725)
T ss_pred hHHHhhhhhhhccCCccccHHHHHHhh-----------------HHHhhhhhHHHHhhhhhccccccccceeeecCcchh
Confidence 445678899999999999999999999 89999999999999999999999999887644320
Q ss_pred --------------------------------------------------------------------------------
Q 002168 94 -------------------------------------------------------------------------------- 93 (957)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (957)
T Consensus 285 ~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~ 364 (725)
T KOG0110|consen 285 STAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEV 364 (725)
T ss_pred hhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhh
Confidence
Q ss_pred -----------------CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCc
Q 002168 94 -----------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGR 156 (957)
Q Consensus 94 -----------------~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~ 156 (957)
....+.|+|+|||..+..++|.++|..||.|..+.+......++|+|.+..+|++|++.|...
T Consensus 365 ~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklays 444 (725)
T KOG0110|consen 365 RRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYS 444 (725)
T ss_pred hhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchh
Confidence 112357999999999999999999999999999966654456999999999999999999999
Q ss_pred eeCCeEEEEEEccCCccccCCCCCC--CCCCCC-Cc-cCCCCCCCCCccccc-CCCCCCc--CCCCCCCCCceEEEecCC
Q 002168 157 QIGGEQLRVDFLRSQPSRREQWPNS--HDARDG-PI-IGRGTGFSDNHSAYK-RSHPQSS--VGRNRDGPPSKILWVGYP 229 (957)
Q Consensus 157 ~i~Gr~I~V~~ak~k~~rr~~~~~~--~~~r~~-~~-~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~ps~VL~Vgnp 229 (957)
.+....+++.|+............. ...... .. ........+...... ....... .........++ ||+.|+
T Consensus 445 r~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~-lfvkNl 523 (725)
T KOG0110|consen 445 RFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK-LFVKNL 523 (725)
T ss_pred hhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchh-hhhhcC
Confidence 9999999999886554221100000 000000 00 000000000000000 0000000 01111222233 777777
Q ss_pred CCCCCCHHHHHHHHhhcCCeEEEEEeC---------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 002168 230 PSVQMDEQMLHNAMILFGEIERIKSYP---------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 294 (957)
Q Consensus 230 ps~~vtEeeLr~~Fs~fG~V~~VkI~~---------srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~ 294 (957)
. +..+.++|..+|...|.|..+.|.. +.|||||+|.+.++|.+|++.|+|..++|+.|.|.++.
T Consensus 524 n-f~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 524 N-FDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred C-cccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 6 5799999999999999999998863 23999999999999999999999999999999999997
No 36
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.77 E-value=3.5e-17 Score=179.41 Aligned_cols=269 Identities=22% Similarity=0.313 Sum_probs=200.4
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-cCCCcE-EEEEeCCHHHHHHHHHHhcCCccccC--cccccccC-
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-YSSRSF-AFVYFKRVEDAKAAKDALQGSDFRGN--PIKIEFAR- 92 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-grskGy-AFVeF~s~edA~~AL~~Lng~~I~Gr--~I~V~~A~- 92 (957)
..--.++|+|+-+.|+-+-|+.+|++||.|..|.+ .++.+| |.|+|.+.+.|..|.-.|+|..|.+. .|+|.+++
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 34557789999999999999999999999999983 555554 99999999999999999999988665 56666653
Q ss_pred -----------------C---C-------------------------------------------C--CCCceEEcCCCc
Q 002168 93 -----------------P---A-------------------------------------------K--PSKHLWVGGISQ 107 (957)
Q Consensus 93 -----------------p---~-------------------------------------------~--~sr~LyVgNLP~ 107 (957)
| . . .+..|.|.||..
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 0 0 0 135677888875
Q ss_pred -cCCHHHHHHhhcccCCEeEEEEeecCC-ceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccccCCCCCCCCCC
Q 002168 108 -TVSKEELEEGFLKFGNIEDFKFLKDGN-TAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDAR 185 (957)
Q Consensus 108 -~vTeedL~elFskfG~I~~VkIlrdrG-~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~rr~~~~~~~~~r 185 (957)
.+|.+.|..+|.-||.|.+|+|+.+++ .|.|++.+...|..|++.|+|..+.|+.|+|.+++.....-.........-
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~gl 387 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGL 387 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccc
Confidence 489999999999999999999998865 599999999999999999999999999999999987653222111100000
Q ss_pred CCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEE-Ee-CCCcEEEE
Q 002168 186 DGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIK-SY-PSRNYSFV 263 (957)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~Vk-I~-~srG~AFV 263 (957)
...+.. ...... ...+...-....+++..++..+.+. .++||+|+++|..-|...+.. .+ +++.+|++
T Consensus 388 T~dy~~---spLhrf------kkpgsKN~~ni~PpsatlHlsnip~-svsee~lk~~f~~~g~~vkafkff~kd~kmal~ 457 (492)
T KOG1190|consen 388 TKDYGN---SPLHRF------KKPGSKNYQNIFPPSATLHLSNIPP-SVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALP 457 (492)
T ss_pred cccCCC---Cchhhc------cCcccccccccCCchhheeeccCCc-ccchhHHHHhhhcCCceEEeeeecCCCcceeec
Confidence 000000 000000 0000111111345677777777665 599999999999888764444 33 57899999
Q ss_pred EeCCHHHHHHHHHHhCCCeeCC-CeEEEEeecCC
Q 002168 264 EFRSVDEARRAKEGLQGRLFND-PRITIMFSSSE 296 (957)
Q Consensus 264 eF~T~edA~~AIe~LNGk~f~G-r~I~V~~A~~~ 296 (957)
.+.++|+|..|+..|+...+.+ ..++|+|+++.
T Consensus 458 q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 458 QLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred ccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 9999999999999999988875 59999998753
No 37
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.76 E-value=7.8e-17 Score=177.29 Aligned_cols=151 Identities=21% Similarity=0.344 Sum_probs=128.5
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhc-cCCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFG-KFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~Fs-kfG~I~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
+...+.+||+|||+++...||+++|. +.|+|+.|. .+++||||.|+|+++|.+++|++.||...+.||+|.|+-
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 34567799999999999999999998 778998777 688999999999999999999999999999999998865
Q ss_pred cCC-----------------------------------------------------------------------------
Q 002168 91 ARP----------------------------------------------------------------------------- 93 (957)
Q Consensus 91 A~p----------------------------------------------------------------------------- 93 (957)
...
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 320
Q ss_pred -----------CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCce
Q 002168 94 -----------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQ 157 (957)
Q Consensus 94 -----------~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~ 157 (957)
.+...++||+||.+.+..+.|++.|.-.|.|+.|.+-.| +|+|.++|...-+|-+||..+++.-
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 112347999999999999999999999999999988766 4789999999999999999998765
Q ss_pred eCCeEEEEEE
Q 002168 158 IGGEQLRVDF 167 (957)
Q Consensus 158 i~Gr~I~V~~ 167 (957)
+..+...+..
T Consensus 281 ~~~~~~~~Rl 290 (608)
T KOG4212|consen 281 LFDRRMTVRL 290 (608)
T ss_pred Cccccceeec
Confidence 5555544443
No 38
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=4.4e-18 Score=177.02 Aligned_cols=157 Identities=27% Similarity=0.450 Sum_probs=138.4
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
....+|.|--||..+|.|||+.+|...|+|++|++++|| ||+||-|.+++||++|+..|||..+..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 445689999999999999999999999999999999996 78999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCC
Q 002168 169 RSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGE 248 (957)
Q Consensus 169 k~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~ 248 (957)
+..... ....++++.+++.. ++..||+++|++||.
T Consensus 119 RPSs~~-------------------------------------------Ik~aNLYvSGlPkt--MtqkelE~iFs~fGr 153 (360)
T KOG0145|consen 119 RPSSDS-------------------------------------------IKDANLYVSGLPKT--MTQKELEQIFSPFGR 153 (360)
T ss_pred cCChhh-------------------------------------------hcccceEEecCCcc--chHHHHHHHHHHhhh
Confidence 876421 12256777777776 999999999999999
Q ss_pred eEEEEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCC--CeEEEEeecCC
Q 002168 249 IERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFND--PRITIMFSSSE 296 (957)
Q Consensus 249 V~~VkI~------~srG~AFVeF~T~edA~~AIe~LNGk~f~G--r~I~V~~A~~~ 296 (957)
|..-+|. -+||.+||.|+..++|+.||..|||..-.| ..|.|.|++.+
T Consensus 154 IItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 154 IITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred hhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 8766664 469999999999999999999999998776 58999999765
No 39
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.76 E-value=4.8e-18 Score=169.60 Aligned_cols=163 Identities=24% Similarity=0.399 Sum_probs=137.6
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
.....+||||||+..++++-|+++|-+.|+|.++.+.+| +|||||+|.++|||+-|++-||..++.|+.|+|..
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 456789999999999999999999999999999999987 58999999999999999999999999999999997
Q ss_pred ccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcC
Q 002168 168 LRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFG 247 (957)
Q Consensus 168 ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG 247 (957)
+.... . ....+--+|++|+.. .++|..|.+.|+.||
T Consensus 86 as~~~---~----------------------------------------nl~vganlfvgNLd~-~vDe~~L~dtFsafG 121 (203)
T KOG0131|consen 86 ASAHQ---K----------------------------------------NLDVGANLFVGNLDP-EVDEKLLYDTFSAFG 121 (203)
T ss_pred ccccc---c----------------------------------------cccccccccccccCc-chhHHHHHHHHHhcc
Confidence 65111 0 011123355555553 699999999999999
Q ss_pred CeEE-EEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCCCC
Q 002168 248 EIER-IKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG 300 (957)
Q Consensus 248 ~V~~-VkI~------~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~~pg 300 (957)
.+.. -+++ ..++||||.|++.+.+.+|++.|||..+.+++|+|.|+..+...|
T Consensus 122 ~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 122 VLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred ccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 8754 3433 357899999999999999999999999999999999998887766
No 40
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.74 E-value=8.6e-16 Score=172.64 Aligned_cols=275 Identities=19% Similarity=0.229 Sum_probs=183.7
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
..+......|-+++||+++|++||.+||+.|+ |++++ +++..|-|||+|.+.||+++|| +++...|..+.|.|-
T Consensus 4 ~~e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 4 ENEGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVF 81 (510)
T ss_pred ccCCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEE
Confidence 34567888999999999999999999999995 77766 4788999999999999999999 788889999999997
Q ss_pred ccCC------------C--CCCCceEEcCCCccCCHHHHHHhhcccCCEeE-EEEeec-----CCceEEEeCCHHHHHHH
Q 002168 90 FARP------------A--KPSKHLWVGGISQTVSKEELEEGFLKFGNIED-FKFLKD-----GNTAFVEYSRLEDAAEA 149 (957)
Q Consensus 90 ~A~p------------~--~~sr~LyVgNLP~~vTeedL~elFskfG~I~~-VkIlrd-----rG~AFVeF~t~edA~kA 149 (957)
.+.. . .....|.+++||+.||++||.++|+..-.|.. |.++.+ .|.|||.|++.++|++|
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~A 161 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIA 161 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHH
Confidence 7632 1 13467999999999999999999998876665 434444 35799999999999999
Q ss_pred HHHhCCceeCCeEEEEEEccCCccccCCC--------CCCCCC----CCC-C----------------ccCCCCCCCC--
Q 002168 150 LKNINGRQIGGEQLRVDFLRSQPSRREQW--------PNSHDA----RDG-P----------------IIGRGTGFSD-- 198 (957)
Q Consensus 150 Ie~LnG~~i~Gr~I~V~~ak~k~~rr~~~--------~~~~~~----r~~-~----------------~~~~~~~~~~-- 198 (957)
+. -|...|+.|-|.|..+.....++... +...+. +.. . .........+
T Consensus 162 l~-rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~ 240 (510)
T KOG4211|consen 162 LG-RHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYP 240 (510)
T ss_pred HH-HHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCc
Confidence 95 46678888999987665332222110 000000 000 0 0000000000
Q ss_pred --------------C---cccccCCCCCCcCCCCCCCCCc-eEEEecCCCCCCCCHHHHHHHHhhcCCe-EEEEEe---C
Q 002168 199 --------------N---HSAYKRSHPQSSVGRNRDGPPS-KILWVGYPPSVQMDEQMLHNAMILFGEI-ERIKSY---P 256 (957)
Q Consensus 199 --------------~---~~~~~~~~~~~~~~~~~~~~ps-~VL~Vgnpps~~vtEeeLr~~Fs~fG~V-~~VkI~---~ 256 (957)
. .......+.............. .++....++ +..++.++.++|+..-.+ .+|.+. +
T Consensus 241 ~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlp-y~a~~~di~nfFspl~p~~v~i~ig~dGr 319 (510)
T KOG4211|consen 241 SLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLP-YDATENDIANFFSPLNPYRVHIEIGPDGR 319 (510)
T ss_pred cccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCC-ccCCCcchhhhcCCCCceeEEEEeCCCCc
Confidence 0 0000001111111111111111 344444444 569999999999987555 244443 4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 002168 257 SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 293 (957)
Q Consensus 257 srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A 293 (957)
..|-|+|+|.|.++|..|+.+ ++..+..+-|.+..-
T Consensus 320 ~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln 355 (510)
T KOG4211|consen 320 ATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLN 355 (510)
T ss_pred cCCcceeecccchhhHhhhcc-CCcccCcceeeeccc
Confidence 578999999999999999764 556666666665443
No 41
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=4e-17 Score=183.96 Aligned_cols=184 Identities=20% Similarity=0.276 Sum_probs=142.9
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
..+|||++||++++.++|.++|+.+|+|..+.+..+ +||+||.|.-.+|+++|++..++..|.|+.|.|.+++.
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 379999999999999999999999999999999876 57899999999999999999999999999999999886
Q ss_pred CccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeE
Q 002168 171 QPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIE 250 (957)
Q Consensus 171 k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~ 250 (957)
............. .......+.......-..+.--|||.|+| +.+.+.+|+.+|+.||.|.
T Consensus 85 R~r~e~~~~~e~~------------------~veK~~~q~~~~k~~v~~~k~rLIIRNLP-f~~k~~dLk~vFs~~G~V~ 145 (678)
T KOG0127|consen 85 RARSEEVEKGENK------------------AVEKPIEQKRPTKAKVDLPKWRLIIRNLP-FKCKKPDLKNVFSNFGKVV 145 (678)
T ss_pred cccchhcccccch------------------hhhcccccCCcchhhccCccceEEeecCC-cccCcHHHHHHHhhcceEE
Confidence 6533211100000 00000001011111112223345555555 6799999999999999999
Q ss_pred EEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCCC
Q 002168 251 RIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 299 (957)
Q Consensus 251 ~VkI~~-----srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~~p 299 (957)
+|.|.+ -.|||||.|....+|..|++.+||..|.|+.|-|.||-.+..-
T Consensus 146 Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 146 EIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTY 199 (678)
T ss_pred EEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccc
Confidence 999973 2589999999999999999999999999999999999776544
No 42
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.71 E-value=2.5e-15 Score=163.12 Aligned_cols=274 Identities=24% Similarity=0.282 Sum_probs=204.7
Q ss_pred CCCCCCCEEEEccCC--CCCcHHHHHHHhccCCCeeEEE-ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccC--ccccc
Q 002168 15 KEAPPSSNLWVGNLS--ADTTDADLKELFGKFGALDKVT-TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGN--PIKIE 89 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP--~svTE~dL~e~FskfG~I~~V~-~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr--~I~V~ 89 (957)
+...++..|.+.-|. +.+|-+-|..++...|+|.+|. +.++.-.|.|+|++.+.|.+|...|||..|+.. .|+|+
T Consensus 115 es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 335666677666554 4589999999999999999988 455666899999999999999999999998655 88888
Q ss_pred ccCC----------------------------------------------------------------------------
Q 002168 90 FARP---------------------------------------------------------------------------- 93 (957)
Q Consensus 90 ~A~p---------------------------------------------------------------------------- 93 (957)
|++|
T Consensus 195 yAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~ 274 (494)
T KOG1456|consen 195 YAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRD 274 (494)
T ss_pred ecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccccc
Confidence 8863
Q ss_pred ---------CCCCCceEEcCCCcc-CCHHHHHHhhcccCCEeEEEEeecC-CceEEEeCCHHHHHHHHHHhCCceeCCeE
Q 002168 94 ---------AKPSKHLWVGGISQT-VSKEELEEGFLKFGNIEDFKFLKDG-NTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (957)
Q Consensus 94 ---------~~~sr~LyVgNLP~~-vTeedL~elFskfG~I~~VkIlrdr-G~AFVeF~t~edA~kAIe~LnG~~i~Gr~ 162 (957)
..+.+.++|-+|... ++-+.|.++|-.||.|+.|++++.+ |+|.|++.+..+.++|+..||+..+.|.+
T Consensus 275 ~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 275 GRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 012346888888865 6778899999999999999999986 88999999999999999999999999999
Q ss_pred EEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHH
Q 002168 163 LRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNA 242 (957)
Q Consensus 163 I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~ 242 (957)
|.|.+++..-...... -........+...... ...+-.......++....++++|+.-|.|. .+||+.|.++
T Consensus 355 l~v~~SkQ~~v~~~~p-flLpDgSpSfKdys~S------kNnRFssp~qAsKNrIq~Ps~vLHffNaP~-~vtEe~l~~i 426 (494)
T KOG1456|consen 355 LNVCVSKQNFVSPVQP-FLLPDGSPSFKDYSGS------KNNRFSSPEQASKNRIQPPSNVLHFFNAPL-GVTEEQLIGI 426 (494)
T ss_pred EEEeeccccccccCCc-eecCCCCcchhhcccc------cccccCChhHhhcccccCCcceeEEecCCC-ccCHHHHHHH
Confidence 9999887543222110 0000001111100000 001111122344556778889887766663 6999999999
Q ss_pred HhhcCC-eEEEEEeCCC----cEEEEEeCCHHHHHHHHHHhCCCeeCCC------eEEEEeecCC
Q 002168 243 MILFGE-IERIKSYPSR----NYSFVEFRSVDEARRAKEGLQGRLFNDP------RITIMFSSSE 296 (957)
Q Consensus 243 Fs~fG~-V~~VkI~~sr----G~AFVeF~T~edA~~AIe~LNGk~f~Gr------~I~V~~A~~~ 296 (957)
|...+. ..+|++++.| .-+++||++.++|..|+..||...+.+. .++++|+.++
T Consensus 427 ~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 427 CNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred hhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 987764 4788888654 3799999999999999999999988764 6788887654
No 43
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=4.3e-16 Score=179.24 Aligned_cols=259 Identities=23% Similarity=0.415 Sum_probs=196.3
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccC-----------C-CeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKF-----------G-ALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR 82 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~Fskf-----------G-~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~ 82 (957)
.-....+.++|+++|..++|+.+..||..- | .+..+.+...+++||++|.+.++|..|+ .+++..+.
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~-~~~~~~f~ 248 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAM-ALDGIIFE 248 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhh-cccchhhC
Confidence 335678899999999999999999999744 2 3677778889999999999999999999 88898888
Q ss_pred cCcccccccCC--------------------------CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec----
Q 002168 83 GNPIKIEFARP--------------------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---- 132 (957)
Q Consensus 83 Gr~I~V~~A~p--------------------------~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd---- 132 (957)
|..+++.--.. .....+++|++||..+++..+.+++..||.+....+..+
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 88776633210 112468999999999999999999999999998888876
Q ss_pred --CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCC
Q 002168 133 --GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQS 210 (957)
Q Consensus 133 --rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (957)
+|+||.+|.+......|+..|||..++++.|.|..+.........+.. .... ......
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~--~~~~------------~~~~i~------ 388 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN--ISQS------------QVPGIP------ 388 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC--cccc------------ccccch------
Confidence 578999999999999999999999999999999987655432222111 0000 000000
Q ss_pred cCCCCCCCCCceEEEecCCCCC--CCCH-------HHHHHHHhhcCCeEEEEEeC---------CCcEEEEEeCCHHHHH
Q 002168 211 SVGRNRDGPPSKILWVGYPPSV--QMDE-------QMLHNAMILFGEIERIKSYP---------SRNYSFVEFRSVDEAR 272 (957)
Q Consensus 211 ~~~~~~~~~ps~VL~Vgnpps~--~vtE-------eeLr~~Fs~fG~V~~VkI~~---------srG~AFVeF~T~edA~ 272 (957)
.........+++|++.-+.-.- -.++ |+++..+.+||.|..|.+.+ +.|..||+|.+.++|+
T Consensus 389 ~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~q 468 (500)
T KOG0120|consen 389 LLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQ 468 (500)
T ss_pred hhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHH
Confidence 0001123455666655443210 0122 35566677999999999964 4689999999999999
Q ss_pred HHHHHhCCCeeCCCeEEEEeec
Q 002168 273 RAKEGLQGRLFNDPRITIMFSS 294 (957)
Q Consensus 273 ~AIe~LNGk~f~Gr~I~V~~A~ 294 (957)
+|++.|+|+.|.|+.|...|-.
T Consensus 469 rA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 469 RAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHccCceeCCcEEEEEecC
Confidence 9999999999999999998864
No 44
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=2.8e-15 Score=149.85 Aligned_cols=177 Identities=25% Similarity=0.388 Sum_probs=135.1
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC---CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG---NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr---G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
..+++|||+|||.++.+.||+++|.+||.|.+|.+.... .||||+|++..||+.||..-+|..+.|+.|+|+|+..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 457899999999999999999999999999999987664 58999999999999999999999999999999998754
Q ss_pred ccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEE
Q 002168 172 PSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIER 251 (957)
Q Consensus 172 ~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~ 251 (957)
.... .+.+.+.+.+.+....... ..........+|++.+++++ -++++|++++.+-|.|..
T Consensus 84 r~s~--------~~~G~y~gggrgGgg~gg~---------rgppsrrSe~RVvVsGLp~S--gSWQDLKDHmReaGdvCf 144 (241)
T KOG0105|consen 84 RSSS--------DRRGSYSGGGRGGGGGGGR---------RGPPSRRSEYRVVVSGLPPS--GSWQDLKDHMREAGDVCF 144 (241)
T ss_pred Cccc--------ccccccCCCCCCCCCCCcc---------cCCcccccceeEEEecCCCC--CchHHHHHHHHhhCCeee
Confidence 3110 1111111111110000000 00011334467899999987 899999999999999999
Q ss_pred EEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeC--CCeEEEE
Q 002168 252 IKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFN--DPRITIM 291 (957)
Q Consensus 252 VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~--Gr~I~V~ 291 (957)
..+.++ |++.|+|...|+.+-|+.+|+...+. |...-|.
T Consensus 145 adv~rD-g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 145 ADVQRD-GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred eeeecc-cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 988866 69999999999999999999988775 4444443
No 45
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=6e-16 Score=161.76 Aligned_cols=213 Identities=22% Similarity=0.386 Sum_probs=149.1
Q ss_pred cCcccccccCCC---CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhC
Q 002168 83 GNPIKIEFARPA---KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNIN 154 (957)
Q Consensus 83 Gr~I~V~~A~p~---~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~Ln 154 (957)
+|.|.|+.+..+ ...++||||-|.+.-.|||++.+|..||.|++|.+++. ||+|||.|.+.-+|..||..||
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLH 81 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALH 81 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhc
Confidence 578888887632 25689999999999999999999999999999999976 7899999999999999999999
Q ss_pred Cc-eeCC--eEEEEEEccCCccccCCC----------CCCCCCC------------------------------------
Q 002168 155 GR-QIGG--EQLRVDFLRSQPSRREQW----------PNSHDAR------------------------------------ 185 (957)
Q Consensus 155 G~-~i~G--r~I~V~~ak~k~~rr~~~----------~~~~~~r------------------------------------ 185 (957)
|. .+-| ..|.|+|+..+++|.... .......
T Consensus 82 gSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~ 161 (371)
T KOG0146|consen 82 GSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAA 161 (371)
T ss_pred ccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHH
Confidence 98 4444 789999998766431100 0000000
Q ss_pred --------------CCCccC-------CC---------------CCCCCC-------------ccc--ccCCC-------
Q 002168 186 --------------DGPIIG-------RG---------------TGFSDN-------------HSA--YKRSH------- 207 (957)
Q Consensus 186 --------------~~~~~~-------~~---------------~~~~~~-------------~~~--~~~~~------- 207 (957)
..+... .. .++... +.. .....
T Consensus 162 ~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~ 241 (371)
T KOG0146|consen 162 QMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVAD 241 (371)
T ss_pred HHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccc
Confidence 000000 00 000000 000 00000
Q ss_pred -----------------------------CCC--cCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEe-
Q 002168 208 -----------------------------PQS--SVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSY- 255 (957)
Q Consensus 208 -----------------------------~~~--~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~- 255 (957)
... ........+.+++++..++-+ ..+.||.++|-.||.|++.|++
T Consensus 242 ~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQE--FgDaEliQmF~PFGhivSaKVFv 319 (371)
T KOG0146|consen 242 PLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQE--FGDAELIQMFLPFGHIVSAKVFV 319 (371)
T ss_pred hhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchh--hccHHHHHHhccccceeeeeeee
Confidence 000 000111233455565566554 7999999999999999999987
Q ss_pred -----CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 002168 256 -----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 297 (957)
Q Consensus 256 -----~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~ 297 (957)
.+|+|+||.|+++..|+.||..|||..|+-++|+|.+.+.++
T Consensus 320 DRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 320 DRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred hhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 468999999999999999999999999999999999987654
No 46
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=5.8e-16 Score=167.21 Aligned_cols=165 Identities=21% Similarity=0.348 Sum_probs=136.6
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
.|+||||.|.+.+.|+.|+..|..||+|++|.+.+| +|||||+|+-.|.|..|++.|||..++||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 589999999999999999999999999999998877 68999999999999999999999999999999984322
Q ss_pred CccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeE
Q 002168 171 QPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIE 250 (957)
Q Consensus 171 k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~ 250 (957)
-..... . -...........++++....++ .+|++|+..|+.||+|.
T Consensus 193 mpQAQp-----------------------i---------ID~vqeeAk~fnRiYVaSvHpD--LSe~DiKSVFEAFG~I~ 238 (544)
T KOG0124|consen 193 MPQAQP-----------------------I---------IDMVQEEAKKFNRIYVASVHPD--LSETDIKSVFEAFGEIV 238 (544)
T ss_pred Ccccch-----------------------H---------HHHHHHHHHhhheEEeeecCCC--ccHHHHHHHHHhhccee
Confidence 210000 0 0001111234467777777775 89999999999999999
Q ss_pred EEEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 002168 251 RIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 295 (957)
Q Consensus 251 ~VkI~------~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~ 295 (957)
.|++- .+|||+||+|.+...-..||..||-..++|.-|+|--+-.
T Consensus 239 ~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 239 KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred eEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 99995 3589999999999999999999999999999999966543
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=6.1e-15 Score=147.44 Aligned_cols=149 Identities=27% Similarity=0.487 Sum_probs=130.6
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCC---CcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSS---RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grs---kGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
.+.+++|||+|||.++.|.||.++|.+||.|..|..+.. -.||||+|++..||..||.-.+|..+.|-.|+|+++..
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 467899999999999999999999999999998884332 46999999999999999999999999999999999852
Q ss_pred -----------------------------CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHH
Q 002168 94 -----------------------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLE 144 (957)
Q Consensus 94 -----------------------------~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~e 144 (957)
.....+|.|.+||.+.++.||++.+.+.|.|....+.+|. ++.|+|...|
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-~GvV~~~r~e 161 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-VGVVEYLRKE 161 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-ceeeeeeehh
Confidence 1234689999999999999999999999999998888874 9999999999
Q ss_pred HHHHHHHHhCCceeC--CeEEEEE
Q 002168 145 DAAEALKNINGRQIG--GEQLRVD 166 (957)
Q Consensus 145 dA~kAIe~LnG~~i~--Gr~I~V~ 166 (957)
|-+-|++.|....+. |....+.
T Consensus 162 DMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred hHHHHHHhhccccccCcCcEeeEE
Confidence 999999999887664 4444444
No 48
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.58 E-value=5e-14 Score=146.06 Aligned_cols=197 Identities=26% Similarity=0.425 Sum_probs=146.5
Q ss_pred CCCCceEEcCCCccCCHHHHHH----hhcccCCEeEEEEeec---CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 95 KPSKHLWVGGISQTVSKEELEE----GFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~e----lFskfG~I~~VkIlrd---rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
.++.+|||.||...+..++|+. +|+.||.|.+|...+. +|.|||.|.+.+.|..|++.|+|..+.|+.++|.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3445999999999999999988 9999999999988765 68999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCCCCCCCCccCCCC----CCCCC----cccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHH
Q 002168 168 LRSQPSRREQWPNSHDARDGPIIGRGT----GFSDN----HSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQML 239 (957)
Q Consensus 168 ak~k~~rr~~~~~~~~~r~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeL 239 (957)
++.+..-........-.+......... ...+. ............ . .....++.++++.+++. +++.+.|
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~-~~~~ppn~ilf~~niP~-es~~e~l 163 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-L-AQMAPPNNILFLTNIPS-ESESEML 163 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc-c-ccCCCCceEEEEecCCc-chhHHHH
Confidence 998764322211111111100000000 00000 000000011111 1 33567889999998886 6889999
Q ss_pred HHHHhhcCCeEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhCCCeeC-CCeEEEEeec
Q 002168 240 HNAMILFGEIERIKSYP-SRNYSFVEFRSVDEARRAKEGLQGRLFN-DPRITIMFSS 294 (957)
Q Consensus 240 r~~Fs~fG~V~~VkI~~-srG~AFVeF~T~edA~~AIe~LNGk~f~-Gr~I~V~~A~ 294 (957)
..+|++|....+|+++. .++.|||+|.+...|..|...|+|..|- ...++|.|++
T Consensus 164 ~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999999987 4689999999999999999999999987 8899998875
No 49
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.58 E-value=4.2e-15 Score=163.94 Aligned_cols=153 Identities=24% Similarity=0.436 Sum_probs=135.8
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
+.++|||++|.++++++.|+++|.+||+|.++. +++++||+||+|.+.+...++| ......|.|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 789999999999999999999999999998776 5779999999999999999999 555677899999998876
Q ss_pred CCC---------CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCce
Q 002168 93 PAK---------PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQ 157 (957)
Q Consensus 93 p~~---------~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~ 157 (957)
+.. ..++|||++|+.+++++++++.|++||.|.++.++.| ++++||.|.+++++++++ ...-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceee
Confidence 532 2458999999999999999999999999999988876 588999999999999998 466779
Q ss_pred eCCeEEEEEEccCCcc
Q 002168 158 IGGEQLRVDFLRSQPS 173 (957)
Q Consensus 158 i~Gr~I~V~~ak~k~~ 173 (957)
|+|+++.|..|..+..
T Consensus 163 ~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEV 178 (311)
T ss_pred ecCceeeEeeccchhh
Confidence 9999999998877653
No 50
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.56 E-value=4.6e-14 Score=146.31 Aligned_cols=153 Identities=31% Similarity=0.551 Sum_probs=136.6
Q ss_pred CCCCCEEEEccCCCCCcHHHHHH----HhccCCCeeEEE---ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKE----LFGKFGALDKVT---TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e----~FskfG~I~~V~---~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
..++.||||.||..-+..++|++ +|++||.|.+|. +.+.+|.|||.|++.+.|-.|++.|+|..+.|+.++|.
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34555999999999999999998 999999999988 67889999999999999999999999999999999999
Q ss_pred ccCC-----------------------------------------------------CCCCCceEEcCCCccCCHHHHHH
Q 002168 90 FARP-----------------------------------------------------AKPSKHLWVGGISQTVSKEELEE 116 (957)
Q Consensus 90 ~A~p-----------------------------------------------------~~~sr~LyVgNLP~~vTeedL~e 116 (957)
||+. ..++..+++.|||..++.+.+..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 9852 12345789999999999999999
Q ss_pred hhcccCCEeEEEEeec-CCceEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEEcc
Q 002168 117 GFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIG-GEQLRVDFLR 169 (957)
Q Consensus 117 lFskfG~I~~VkIlrd-rG~AFVeF~t~edA~kAIe~LnG~~i~-Gr~I~V~~ak 169 (957)
+|..|..-++++++.. ++.|||+|.+...|..|...+.+..+. ...+.|.+++
T Consensus 166 lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999999885 578999999999999999999999886 7788887764
No 51
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.3e-14 Score=151.77 Aligned_cols=156 Identities=31% Similarity=0.510 Sum_probs=136.6
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCc-cccC--cccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSD-FRGN--PIKI 88 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~-I~Gr--~I~V 88 (957)
..+.++||||-|...-.|+|++.+|..||.|+++. .+.+||+|||+|.+..||..||..|+|.. +.|- .|.|
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 34789999999999999999999999999999888 67799999999999999999999999965 4443 5666
Q ss_pred cccCC---------------------------------------------------------------------------
Q 002168 89 EFARP--------------------------------------------------------------------------- 93 (957)
Q Consensus 89 ~~A~p--------------------------------------------------------------------------- 93 (957)
++++.
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 66520
Q ss_pred --------------------------------------------------------------------------------
Q 002168 94 -------------------------------------------------------------------------------- 93 (957)
Q Consensus 94 -------------------------------------------------------------------------------- 93 (957)
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence
Q ss_pred --------------------------CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeC
Q 002168 94 --------------------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYS 141 (957)
Q Consensus 94 --------------------------~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~ 141 (957)
....|+|||-.||.+..+.||.+.|-.||.|.+.++.-|| .|+||.|.
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfD 335 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFD 335 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecC
Confidence 1246899999999999999999999999999999988774 57999999
Q ss_pred CHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 142 RLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 142 t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
+..+|..||..|||..|+=+.|+|...+.+.
T Consensus 336 Np~SaQaAIqAMNGFQIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 336 NPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 366 (371)
T ss_pred CchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence 9999999999999999999999998776654
No 52
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.49 E-value=2.8e-14 Score=162.50 Aligned_cols=175 Identities=22% Similarity=0.404 Sum_probs=141.1
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
+...+++|+--|...+++.+|+++|+.+|+|.+|.++.| +|.|||+|.+.+....|| .|.|..+.|-.|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 445678888888888999999999999999999999977 478999999999999999 8999999999999997
Q ss_pred ccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcC
Q 002168 168 LRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFG 247 (957)
Q Consensus 168 ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG 247 (957)
....+++....... ...........+ ++++++- ++++|++|+.+|+.||
T Consensus 255 sEaeknr~a~~s~a-----------------------------~~~k~~~~p~~r-l~vgnLH-fNite~~lr~ifepfg 303 (549)
T KOG0147|consen 255 SEAEKNRAANASPA-----------------------------LQGKGFTGPMRR-LYVGNLH-FNITEDMLRGIFEPFG 303 (549)
T ss_pred cHHHHHHHHhcccc-----------------------------ccccccccchhh-hhhcccc-cCchHHHHhhhccCcc
Confidence 76554442111000 000000111222 7788877 5899999999999999
Q ss_pred CeEEEEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCCCC
Q 002168 248 EIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG 300 (957)
Q Consensus 248 ~V~~VkI~------~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~~pg 300 (957)
.|+.|.+. .++|||||+|.+.++|.+|++.|||.+|.|+.|+|..........
T Consensus 304 ~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 304 KIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred cceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccc
Confidence 99999986 458999999999999999999999999999999998887665443
No 53
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.43 E-value=9.6e-13 Score=135.28 Aligned_cols=142 Identities=24% Similarity=0.473 Sum_probs=116.8
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE---ecCC----CcEEEEEeCCHHHHHHHHHHhcCCcc---ccCcc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT---TYSS----RSFAFVYFKRVEDAKAAKDALQGSDF---RGNPI 86 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~---~grs----kGyAFVeF~s~edA~~AL~~Lng~~I---~Gr~I 86 (957)
..+-+||||.|||.++...||..+|..|--.+... +.+. +.+|||.|.+..+|.+|+..|||..| .+..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 45689999999999999999999999886555333 3333 47999999999999999999999987 46788
Q ss_pred cccccCC-------------------------------------------------------------------------
Q 002168 87 KIEFARP------------------------------------------------------------------------- 93 (957)
Q Consensus 87 ~V~~A~p------------------------------------------------------------------------- 93 (957)
+|++++.
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 8888741
Q ss_pred ----------------CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCC--ceEEEeCCHHHHHHHHHHhCC
Q 002168 94 ----------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGN--TAFVEYSRLEDAAEALKNING 155 (957)
Q Consensus 94 ----------------~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG--~AFVeF~t~edA~kAIe~LnG 155 (957)
...+.+|||.||..++||++|+.+|+.|-....++|....| .||++|++.+.|..|+..|.|
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhc
Confidence 01134799999999999999999999998766666655444 499999999999999999998
Q ss_pred cee
Q 002168 156 RQI 158 (957)
Q Consensus 156 ~~i 158 (957)
..+
T Consensus 271 ~~~ 273 (284)
T KOG1457|consen 271 NLL 273 (284)
T ss_pred cee
Confidence 765
No 54
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.5e-13 Score=143.67 Aligned_cols=143 Identities=28% Similarity=0.511 Sum_probs=128.1
Q ss_pred CEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC-------
Q 002168 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP------- 93 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p------- 93 (957)
..|||++||+.+.+.||..||.+||.|.+|.+ -.||+||+|.+..||..|+..+++..|.|..+.++|++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m--k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM--KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee--ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 47999999999999999999999999998876 357889999999999999999999999999998888862
Q ss_pred ----------------CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCce
Q 002168 94 ----------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQ 157 (957)
Q Consensus 94 ----------------~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~ 157 (957)
....+.+.|.++...+.+.+|.+.|..+|.+....+ ..+++||+|.+.++|++|++.|++..
T Consensus 80 ~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 80 PRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred CCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchh
Confidence 223467899999999999999999999999855444 67899999999999999999999999
Q ss_pred eCCeEEEEEE
Q 002168 158 IGGEQLRVDF 167 (957)
Q Consensus 158 i~Gr~I~V~~ 167 (957)
+.|+.|.+..
T Consensus 158 ~~~~~l~~~~ 167 (216)
T KOG0106|consen 158 LNGRRISVEK 167 (216)
T ss_pred hcCceeeecc
Confidence 9999999943
No 55
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=3.6e-13 Score=140.86 Aligned_cols=163 Identities=26% Similarity=0.426 Sum_probs=127.0
Q ss_pred CceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccccCC
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQ 177 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~rr~~ 177 (957)
..+|||+|++.+.+++|+++|.+||.|.++.+.. +++||+|.+..+|..|+..+|++.|.|..+.|+|++........
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~ 79 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGR 79 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--ccceeccCchhhhhcccchhcCceecceeeeeecccccccccCC
Confidence 4689999999999999999999999999988753 68899999999999999999999999988999998764322100
Q ss_pred CCCCCCCCCCCccCCCCCCCC-CcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeC
Q 002168 178 WPNSHDARDGPIIGRGTGFSD-NHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP 256 (957)
Q Consensus 178 ~~~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~ 256 (957)
+.+. ... ..............+++.++.. .+.+.+|.+.|+.+|.+....+
T Consensus 80 -----------------~~~g~r~~--------~~~~~~~p~~s~~r~~~~~~~~-r~~~qdl~d~~~~~g~~~~~~~-- 131 (216)
T KOG0106|consen 80 -----------------PRGGDRRS--------DSRRYRPPSRTHFRLIVRNLSL-RVSWQDLKDHFRPAGEVTYVDA-- 131 (216)
T ss_pred -----------------CCCCCccc--------hhhccCCcccccceeeeccchh-hhhHHHHhhhhcccCCCchhhh--
Confidence 0000 000 0000001122234555666553 6889999999999999965555
Q ss_pred CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 002168 257 SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI 290 (957)
Q Consensus 257 srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V 290 (957)
.++++||+|.+.++|.+|++.|+|..+.|+.|++
T Consensus 132 ~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 132 RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 5889999999999999999999999999999999
No 56
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.39 E-value=1.4e-12 Score=143.99 Aligned_cols=163 Identities=21% Similarity=0.353 Sum_probs=133.8
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
..++|||++|+.++++|.|++.|..||+|.+|.+++| ++++||+|.+.+...+++. ...+.|.|+.|.++.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 6789999999999999999999999999999999987 5899999999999998884 44567899999988776
Q ss_pred CCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCe
Q 002168 170 SQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEI 249 (957)
Q Consensus 170 ~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V 249 (957)
........ .....++.+|++.++. .++++++++.|++||.|
T Consensus 84 ~r~~~~~~--------------------------------------~~~~~tkkiFvGG~~~-~~~e~~~r~yfe~~g~v 124 (311)
T KOG4205|consen 84 SREDQTKV--------------------------------------GRHLRTKKIFVGGLPP-DTTEEDFKDYFEQFGKV 124 (311)
T ss_pred Cccccccc--------------------------------------ccccceeEEEecCcCC-CCchHHHhhhhhcccee
Confidence 55422211 0112466777776664 69999999999999998
Q ss_pred EEEEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCCC
Q 002168 250 ERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 299 (957)
Q Consensus 250 ~~VkI~------~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~~p 299 (957)
..+.++ +.+||+||.|.+++...+++. ..-..|+|+.+.|..|..+..-
T Consensus 125 ~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 125 ADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred EeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhc
Confidence 888876 468999999999999988864 5778899999999998766544
No 57
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.38 E-value=1e-11 Score=134.88 Aligned_cols=192 Identities=17% Similarity=0.262 Sum_probs=131.5
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEe--------EEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCe
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIE--------DFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGE 161 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~--------~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr 161 (957)
..+..|||.|||.++|.+++.++|+++|.|. .|+|.++ +|-|.|.|...+++..|++.|++..++|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3456799999999999999999999999775 4788777 46799999999999999999999999999
Q ss_pred EEEEEEccCCccccCCCCCCCCCCCCCc----cCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCC--CCCC
Q 002168 162 QLRVDFLRSQPSRREQWPNSHDARDGPI----IGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPS--VQMD 235 (957)
Q Consensus 162 ~I~V~~ak~k~~rr~~~~~~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps--~~vt 235 (957)
+|+|+.|+-................... ....-..+... ...........+.|++.+.... +..+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~p---------d~~~~sk~r~~~tVi~kn~Ftp~~~~~~ 282 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRP---------DRDDPSKARADRTVILKNMFTPEDFEKN 282 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCC---------CccccccccCCcEEEeeecCCHHHhccC
Confidence 9999987644322111110000000000 00000000000 0001111222344444443211 1223
Q ss_pred -------HHHHHHHHhhcCCeEEEEEe--CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 002168 236 -------EQMLHNAMILFGEIERIKSY--PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 295 (957)
Q Consensus 236 -------EeeLr~~Fs~fG~V~~VkI~--~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~ 295 (957)
+++|++.+++||.|.+|.|. ...|.+.|.|.+.++|..+|+.|+|+.|.|+.|+.....-
T Consensus 283 ~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 283 PDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 35677889999999999998 4579999999999999999999999999999999877643
No 58
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.37 E-value=7.6e-12 Score=128.78 Aligned_cols=189 Identities=18% Similarity=0.290 Sum_probs=125.7
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-C------CceEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-G------NTAFVEYSRLEDAAEALKNINGRQIG---GEQLR 164 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-r------G~AFVeF~t~edA~kAIe~LnG~~i~---Gr~I~ 164 (957)
..-++|||.+||.++...||+.+|..|-..+.+.+... + -.|||.|.+..+|..|+..|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999987777766533 3 35999999999999999999999985 79999
Q ss_pred EEEccCCccccCCCCCCCCCCCCCccCCCCCC--------------CCCccccc----------------------CCCC
Q 002168 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGF--------------SDNHSAYK----------------------RSHP 208 (957)
Q Consensus 165 V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~--------------~~~~~~~~----------------------~~~~ 208 (957)
|++++.+..++.............+...+.+. .+...-.. +-..
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence 99998776443322111111100000000000 00000000 0000
Q ss_pred C------CcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhCC
Q 002168 209 Q------SSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP--SRNYSFVEFRSVDEARRAKEGLQG 280 (957)
Q Consensus 209 ~------~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~--srG~AFVeF~T~edA~~AIe~LNG 280 (957)
. ...........+.+|||-|+-. +++|++|+.+|+.|-.+..++|.. +...|||+|++.+.|..|+..|+|
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~-~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGP-NCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCC-CCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhc
Confidence 0 0000011223345666655543 699999999999998877777753 345899999999999999999999
Q ss_pred CeeC
Q 002168 281 RLFN 284 (957)
Q Consensus 281 k~f~ 284 (957)
..|.
T Consensus 271 ~~~s 274 (284)
T KOG1457|consen 271 NLLS 274 (284)
T ss_pred ceec
Confidence 8763
No 59
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.37 E-value=2e-12 Score=129.00 Aligned_cols=81 Identities=32% Similarity=0.501 Sum_probs=73.2
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
...+++|||+|||+++||++|+++|++||.|.+|+ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45688999999999999999999999999999877 356799999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 002168 91 ARPAKPS 97 (957)
Q Consensus 91 A~p~~~s 97 (957)
+.+....
T Consensus 111 a~~~~~~ 117 (144)
T PLN03134 111 ANDRPSA 117 (144)
T ss_pred CCcCCCC
Confidence 9755443
No 60
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.32 E-value=8.6e-12 Score=124.45 Aligned_cols=79 Identities=27% Similarity=0.556 Sum_probs=73.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
...+++|||+||+.++++++|+++|++||.|.+|+++.+ +++|||+|.+.++|++|++.||+..|.|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 455789999999999999999999999999999999876 58999999999999999999999999999999999
Q ss_pred ccCCc
Q 002168 168 LRSQP 172 (957)
Q Consensus 168 ak~k~ 172 (957)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87654
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.22 E-value=3.3e-11 Score=103.22 Aligned_cols=65 Identities=42% Similarity=0.779 Sum_probs=62.0
Q ss_pred eEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002168 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (957)
Q Consensus 100 LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~ 164 (957)
|||+|||.++|+++|+++|+.||.|..+++..+ +++|||+|.+.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999985 57899999999999999999999999999985
No 62
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=2.3e-11 Score=121.61 Aligned_cols=78 Identities=28% Similarity=0.600 Sum_probs=73.1
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
.-.++||||||+..+++.||+.+|.+||.|.+|+|.++ .|||||||++..||+.|+..|+|+.|+|..|+|++++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 34789999999999999999999999999999999887 5899999999999999999999999999999999987664
No 63
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.21 E-value=1.8e-11 Score=104.89 Aligned_cols=65 Identities=37% Similarity=0.743 Sum_probs=60.1
Q ss_pred EEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 23 LWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 23 LfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
|||+|||.++|+++|+++|++||.|..+.. ++.+++|||+|.+.++|.+|++.++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988873 44689999999999999999999999999998875
No 64
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.21 E-value=2.1e-10 Score=124.91 Aligned_cols=154 Identities=22% Similarity=0.392 Sum_probs=128.4
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCee--------EEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCcccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALD--------KVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRG 83 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~--------~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~G 83 (957)
..-+..|||.|||.++|.+++.++|++||-|- .|+ .|.-+|-|.+.|-..|+...|+.-|++..|+|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 34567799999999999999999999999774 233 35568999999999999999999999999999
Q ss_pred CcccccccC----------------------------------C-------CCCCCceEEcCCCc----cCC-------H
Q 002168 84 NPIKIEFAR----------------------------------P-------AKPSKHLWVGGISQ----TVS-------K 111 (957)
Q Consensus 84 r~I~V~~A~----------------------------------p-------~~~sr~LyVgNLP~----~vT-------e 111 (957)
+.|+|+.|+ + .+..++|.|.|+=. ..+ +
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999998873 0 12356888988842 122 4
Q ss_pred HHHHHhhcccCCEeEEEEe--ecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 112 EELEEGFLKFGNIEDFKFL--KDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 112 edL~elFskfG~I~~VkIl--rdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
++|++.+.+||.|..|.+. ...|.+-|.|.+.++|..||+.|+|..|.||.|.......
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 6778889999999999987 3368899999999999999999999999999999886543
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.20 E-value=4e-10 Score=125.12 Aligned_cols=201 Identities=19% Similarity=0.270 Sum_probs=135.1
Q ss_pred CCCCCCCceEEcCCCccCCHHHHHHhhc-ccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002168 92 RPAKPSKHLWVGGISQTVSKEELEEGFL-KFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (957)
Q Consensus 92 ~p~~~sr~LyVgNLP~~vTeedL~elFs-kfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V 165 (957)
.+.+..+.+||.|||+++.+.+|+++|+ +.|+|+.|.++.| +|+|.|||+++|.+++|++.||...+.||.|.|
T Consensus 39 n~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 39 NVAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred CcccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 3455567799999999999999999997 5789999999977 689999999999999999999999999999999
Q ss_pred EEccCCccccC-CCCCCCC--------CC--CCCccCCCCC------------------------CCCCcc------ccc
Q 002168 166 DFLRSQPSRRE-QWPNSHD--------AR--DGPIIGRGTG------------------------FSDNHS------AYK 204 (957)
Q Consensus 166 ~~ak~k~~rr~-~~~~~~~--------~r--~~~~~~~~~~------------------------~~~~~~------~~~ 204 (957)
+-.......+. ....... .+ .......... +.+.+. ...
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 85443221100 0000000 00 0000000000 000000 000
Q ss_pred CCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEe-----CCCcEEEEEeCCHHHHHHHHHHhC
Q 002168 205 RSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQ 279 (957)
Q Consensus 205 ~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~-----~srG~AFVeF~T~edA~~AIe~LN 279 (957)
.....-.....-..+.++-+|+.++. +.+....|++.|.--|.|+.|.+. .++|++.++|+++-+|..||..|+
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~-~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~ 277 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLD-YKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLD 277 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccc-cccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhc
Confidence 00000000001122334445555554 468899999999999999888764 568999999999999999999999
Q ss_pred CCeeCCCeEEEEee
Q 002168 280 GRLFNDPRITIMFS 293 (957)
Q Consensus 280 Gk~f~Gr~I~V~~A 293 (957)
+.-+.+++.++++.
T Consensus 278 ~~g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 278 RQGLFDRRMTVRLD 291 (608)
T ss_pred cCCCccccceeecc
Confidence 98888888888875
No 66
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=99.19 E-value=1.9e-11 Score=117.27 Aligned_cols=97 Identities=24% Similarity=0.385 Sum_probs=77.4
Q ss_pred EEeeeecCCcceeeeEEeeccCCcc---ccC------CceeccccccChhHHHHHhhhccCc---eEEEEcC-----CCc
Q 002168 512 WRGIIAKGGTPVCRARCVPFGKGIE---SEL------PEVVNCSARTGLDMLAKHYAEAIGF---DIVFFLP-----DSE 574 (957)
Q Consensus 512 w~g~iaKgG~pvC~~~c~~v~~~~~---~~l------P~~ldctaRt~ld~l~kh~~~a~~~---~vvff~p-----~s~ 574 (957)
|+|+|...+...|.++|..|++.-+ ..| |..|++.-|..++.+.+...+.... +|++|.. +++
T Consensus 1 W~G~i~m~~~~~f~~~a~~v~G~~~~~~~~l~~~~~~p~~i~i~gRl~~~~~~~yl~~i~~s~~~~v~v~~~~~~~~~~~ 80 (119)
T PF07744_consen 1 WQGTISMKSVASFSARAHFVSGNCDLLDNVLPWQQLPPKKIDIRGRLDPEKVWDYLRQIRKSRSKDVCVVALSSPESDSN 80 (119)
T ss_dssp EEEEEEETT-EEEEEEEEEEEE-HHHHHHHS-------EEE-EEEE-SHHHHHHHHHHTSSTTT-EEEEEEE-SSHHHHH
T ss_pred CceEEEcCCCCeEEEEEEEEEcchhHhhhhcccccCCCcEEEEEeecCHHHHHHHHHhcccCCCceEEEEEEcCCcccCH
Confidence 9999999999999999999977532 346 9999999999999999998777533 6666555 788
Q ss_pred hhhHhHHHHHHHhhccccceeeeecC-----CceEEEeC
Q 002168 575 DDFASYTEFLRYLGSKNRAGVAKFDD-----GTTLFLVP 608 (957)
Q Consensus 575 ~D~~~y~ef~~YL~~K~Ra~v~k~~~-----~~tlflvP 608 (957)
+|...|++|++||.+|+|||||++.+ ...|||||
T Consensus 81 ~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 81 SDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp HHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred HHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 99999999999999999999999987 68899998
No 67
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.17 E-value=9.3e-11 Score=128.39 Aligned_cols=260 Identities=17% Similarity=0.142 Sum_probs=172.8
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCC-----CeeEEE-ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFG-----ALDKVT-TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG-----~I~~V~-~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
......|..++||+..++.+|..||...- .+.+.. -++..|.|.|+|.+.|.-.-|+ +++...+.++.|.|-.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlal-kRhkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLAL-KRHKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhh-HhhhhhccCCceeeec
Confidence 34556778899999999999999998552 222222 5778899999999999999999 7788888999998866
Q ss_pred cCC-------------------CCCCCceEEcCCCccCCHHHHHHhhccc----CCEeEEEEeec-----CCceEEEeCC
Q 002168 91 ARP-------------------AKPSKHLWVGGISQTVSKEELEEGFLKF----GNIEDFKFLKD-----GNTAFVEYSR 142 (957)
Q Consensus 91 A~p-------------------~~~sr~LyVgNLP~~vTeedL~elFskf----G~I~~VkIlrd-----rG~AFVeF~t 142 (957)
+.. +...--|.+++||+++++.|+.++|..- |..+.|.+++. .|.|||.|..
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFAC 215 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecC
Confidence 542 1112346678999999999999999632 34556666654 3679999999
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEEccCCccc----cCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCC
Q 002168 143 LEDAAEALKNINGRQIGGEQLRVDFLRSQPSR----REQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDG 218 (957)
Q Consensus 143 ~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~r----r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (957)
+++|..|+.. |...|+.|-|.+..+....-. +.... ............ .... ......
T Consensus 216 ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~--------pLi~~~~sp~~p--~~p~-------~~~p~~ 277 (508)
T KOG1365|consen 216 EEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSE--------PLIPGLTSPLLP--GGPA-------RLVPPT 277 (508)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccc--------cccCCCCCCCCC--CCcc-------ccCCCC
Confidence 9999999954 445566666655443321110 10000 000000000000 0000 000122
Q ss_pred CCceEEEecCCCCCCCCHHHHHHHHhhcCC-eEE--EEEe-----CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 002168 219 PPSKILWVGYPPSVQMDEQMLHNAMILFGE-IER--IKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI 290 (957)
Q Consensus 219 ~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~-V~~--VkI~-----~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V 290 (957)
..+.|+-...++ +..+.++|.+||..|.. |.. |.+. +..|-|||+|.+.++|..|..+.+++..+++-|.|
T Consensus 278 ~~kdcvRLRGLP-y~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEv 356 (508)
T KOG1365|consen 278 RSKDCVRLRGLP-YEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEV 356 (508)
T ss_pred CCCCeeEecCCC-hhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEE
Confidence 224555555555 45999999999998864 322 4443 44689999999999999999998888888888888
Q ss_pred EeecCC
Q 002168 291 MFSSSE 296 (957)
Q Consensus 291 ~~A~~~ 296 (957)
--++-+
T Consensus 357 fp~S~e 362 (508)
T KOG1365|consen 357 FPCSVE 362 (508)
T ss_pred eeccHH
Confidence 665443
No 68
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.14 E-value=2.3e-10 Score=120.50 Aligned_cols=114 Identities=38% Similarity=0.640 Sum_probs=99.9
Q ss_pred CCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC-
Q 002168 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR- 92 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~- 92 (957)
.++|||+|||.++|+++|.++|..||.|..|. +++++|||||+|.+.++|..|++.+++..|.|+.|+|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999997666 46789999999999999999999999999999999999942
Q ss_pred ---C-----------------------CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC
Q 002168 93 ---P-----------------------AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG 133 (957)
Q Consensus 93 ---p-----------------------~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr 133 (957)
+ ......+++++++..++..++...|..+|.+....+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 1 1123578999999999999999999999998766665443
No 69
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.12 E-value=3.9e-09 Score=119.68 Aligned_cols=164 Identities=17% Similarity=0.198 Sum_probs=117.8
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
.....|-+.+||+++|++||.++|+.++ |+.+++.+. .|.|||+|++++|+++|++ .+...+..|-|.|--+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 4456788999999999999999999985 666777776 3679999999999999995 567788899999986654
Q ss_pred CccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeE
Q 002168 171 QPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIE 250 (957)
Q Consensus 171 k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~ 250 (957)
......-. . ... ......-|+-+..+| +.+++++|.+||+..--|.
T Consensus 86 ~e~d~~~~-~------------------------------~g~--~s~~~d~vVRLRGLP-fscte~dI~~FFaGL~Iv~ 131 (510)
T KOG4211|consen 86 AEADWVMR-P------------------------------GGP--NSSANDGVVRLRGLP-FSCTEEDIVEFFAGLEIVP 131 (510)
T ss_pred cccccccc-C------------------------------CCC--CCCCCCceEEecCCC-ccCcHHHHHHHhcCCcccc
Confidence 43211000 0 000 011123344444444 5699999999999885444
Q ss_pred E-EEEe-----CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 002168 251 R-IKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 295 (957)
Q Consensus 251 ~-VkI~-----~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~ 295 (957)
. |.+. +..|-|||+|++.+.|++|+.. |.+.|.-+-|.|.-++.
T Consensus 132 ~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 132 DGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSR 181 (510)
T ss_pred cceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHH
Confidence 4 2222 4568999999999999999875 66778888888877643
No 70
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1e-10 Score=111.49 Aligned_cols=76 Identities=30% Similarity=0.503 Sum_probs=70.7
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecC------CCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS------SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~gr------skGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
.+.+++|||+||.+.++|+.|.++|+++|+|..|+++- ..|||||+|.+.++|..||+.++++.|..+.|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 57899999999999999999999999999999999443 468999999999999999999999999999999998
Q ss_pred cC
Q 002168 91 AR 92 (957)
Q Consensus 91 A~ 92 (957)
.-
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 63
No 71
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=1.5e-10 Score=115.76 Aligned_cols=75 Identities=33% Similarity=0.571 Sum_probs=70.0
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEec-CCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY-SSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~g-rskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
.-.+.|||+||+..+++.||...|..||.|.+|.+. .-.|||||+|++..||..|+..|+|..|.|..|+|+++.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 347999999999999999999999999999999954 457999999999999999999999999999999999985
No 72
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.07 E-value=2.7e-10 Score=122.37 Aligned_cols=73 Identities=27% Similarity=0.379 Sum_probs=67.4
Q ss_pred CCEEEEccCCCCCcHHHHHHHhccCCCeeEEEec---CCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTY---SSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~g---rskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
.++|||+||++.+||++|++||+.||.|.+|.+. ..+|||||+|.+.++|..|| .|+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999843 25799999999999999999 6999999999999999863
No 73
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=2.2e-10 Score=109.25 Aligned_cols=78 Identities=29% Similarity=0.454 Sum_probs=71.6
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
..+++||||||++.++||.|+++|+++|.|..|.+=.|+ |+|||+|-+.++|..|++.++|+.+..+.|+|+|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 458999999999999999999999999999999886664 78999999999999999999999999999999987
Q ss_pred cCCc
Q 002168 169 RSQP 172 (957)
Q Consensus 169 k~k~ 172 (957)
..-.
T Consensus 114 ~GF~ 117 (153)
T KOG0121|consen 114 AGFV 117 (153)
T ss_pred ccch
Confidence 6544
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.07 E-value=2.1e-10 Score=99.26 Aligned_cols=65 Identities=40% Similarity=0.741 Sum_probs=57.5
Q ss_pred EEEccCCCCCcHHHHHHHhccCCCeeEEEecC-----CCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 23 LWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 23 LfVgNLP~svTE~dL~e~FskfG~I~~V~~gr-----skGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
|||+|||+++++++|+++|+.||.|..|...+ .+++|||+|.+.++|.+|++.+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999888444 379999999999999999999888999999874
No 75
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.06 E-value=6.3e-10 Score=92.69 Aligned_cols=55 Identities=36% Similarity=0.714 Sum_probs=51.9
Q ss_pred HHHHHhhcCCeEEEEEeCCC-cEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 002168 239 LHNAMILFGEIERIKSYPSR-NYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 293 (957)
Q Consensus 239 Lr~~Fs~fG~V~~VkI~~sr-G~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A 293 (957)
|+++|++||+|+++.+.+.+ ++|||+|.+.++|.+|++.|||..|+|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999999887 99999999999999999999999999999999986
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.06 E-value=4.9e-10 Score=96.97 Aligned_cols=65 Identities=35% Similarity=0.698 Sum_probs=59.9
Q ss_pred eEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002168 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (957)
Q Consensus 100 LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~ 164 (957)
|||+|||.++++++|+++|+.||.|..+.+.++ +++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999988 47899999999999999999999999999885
No 77
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=4.7e-10 Score=121.40 Aligned_cols=96 Identities=23% Similarity=0.380 Sum_probs=81.7
Q ss_pred cCCccccCcccccccCC---CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec----CCceEEEeCCHHHHHHH
Q 002168 77 QGSDFRGNPIKIEFARP---AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEA 149 (957)
Q Consensus 77 ng~~I~Gr~I~V~~A~p---~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd----rG~AFVeF~t~edA~kA 149 (957)
++..+.|..+.+..+.. +...++|+|.|||+...+-||+.+|++||+|.+|.|+-+ ||||||+|++.+||++|
T Consensus 73 ~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRA 152 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRA 152 (376)
T ss_pred CCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHH
Confidence 34445566666655432 234589999999999999999999999999999999876 68999999999999999
Q ss_pred HHHhCCceeCCeEEEEEEccCCc
Q 002168 150 LKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 150 Ie~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
-++|||..+.||+|.|+.+....
T Consensus 153 Ra~LHgt~VEGRkIEVn~ATarV 175 (376)
T KOG0125|consen 153 RAELHGTVVEGRKIEVNNATARV 175 (376)
T ss_pred HHHhhcceeeceEEEEeccchhh
Confidence 99999999999999999887654
No 78
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.03 E-value=7.1e-10 Score=119.16 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=69.0
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec---CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd---rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
.++|||+||++.+++++|+++|+.||.|++|.|.++ +++|||+|++.++|+.|+ .|+|..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccCC
Confidence 579999999999999999999999999999999987 479999999999999999 59999999999999987643
No 79
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=6.5e-10 Score=116.41 Aligned_cols=79 Identities=35% Similarity=0.581 Sum_probs=73.1
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
+....++|-|.||+.+++|+||+++|.+||.|.+|. ++.+||||||.|.+.+||.+||+.|||.=+.+--|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 345788999999999999999999999999998776 78899999999999999999999999999999999999
Q ss_pred ccCCC
Q 002168 90 FARPA 94 (957)
Q Consensus 90 ~A~p~ 94 (957)
|++|.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99874
No 80
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.00 E-value=3.5e-09 Score=111.49 Aligned_cols=138 Identities=30% Similarity=0.482 Sum_probs=99.6
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
.++|||+||+..+++++|+++|.+||.|..+.+..++ |+|||+|.+.++|..|++.+++..+.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999998874 8899999999999999999999999999999999764
Q ss_pred -CccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCe
Q 002168 171 -QPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEI 249 (957)
Q Consensus 171 -k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V 249 (957)
...+... ... ..... .................+++.+.+ ..+++..+...|..+|.+
T Consensus 195 ~~~~~~~~-~~~---~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (306)
T COG0724 195 ASQPRSEL-SNN---LDASF-----------------AKKLSRGKALLLEKSDNLYVGNLP-LKTAEEELADLFKSRGDI 252 (306)
T ss_pred cccccccc-ccc---cchhh-----------------hccccccccccccccceeeccccc-cccchhHHHHhccccccc
Confidence 1111100 000 00000 000011111123334455555555 358999999999999999
Q ss_pred EEEEEeC
Q 002168 250 ERIKSYP 256 (957)
Q Consensus 250 ~~VkI~~ 256 (957)
..+.+..
T Consensus 253 ~~~~~~~ 259 (306)
T COG0724 253 VRASLPP 259 (306)
T ss_pred eeeeccC
Confidence 7777753
No 81
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.00 E-value=8.5e-10 Score=121.02 Aligned_cols=151 Identities=20% Similarity=0.227 Sum_probs=119.7
Q ss_pred CCEEEEccCCCCCcHHHHHHHhccC-----C--CeeEEE--ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 20 SSNLWVGNLSADTTDADLKELFGKF-----G--ALDKVT--TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~e~Fskf-----G--~I~~V~--~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
--.|.++|||+++++.|+.+||..- | .|.-|+ .++-.|-|||.|..+++|..|| ..+...|+.|.|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL-~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFAL-RKHRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHH-HHHHHHHhHHHHHHHH
Confidence 4568899999999999999999622 2 123333 5777899999999999999999 6667777777776644
Q ss_pred cC----------------------------------CCCCCCceEEcCCCccCCHHHHHHhhcccCC-EeE--EEEeec-
Q 002168 91 AR----------------------------------PAKPSKHLWVGGISQTVSKEELEEGFLKFGN-IED--FKFLKD- 132 (957)
Q Consensus 91 A~----------------------------------p~~~sr~LyVgNLP~~vTeedL~elFskfG~-I~~--VkIlrd- 132 (957)
+. +.+...||.+++||+.++.|||.++|..|.. |.. |.+..+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 32 1334679999999999999999999999974 332 555544
Q ss_pred ----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 133 ----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 133 ----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
.|.|||+|.+.|+|..|....+++.+.+|-|.|--+..+
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 367999999999999999999999998999998865543
No 82
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=7e-09 Score=119.30 Aligned_cols=153 Identities=24% Similarity=0.218 Sum_probs=111.6
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE-ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC---
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR--- 92 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~-~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~--- 92 (957)
.-+.++|||-|||.+|++++|..+|+.||+|..|+ +...+|.+||+|-+..+|++|+++|++..|.|+.|+.-...
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~ 151 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRA 151 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccccc
Confidence 57889999999999999999999999999999998 56678999999999999999999999999999988832211
Q ss_pred ---------------------CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHH
Q 002168 93 ---------------------PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALK 151 (957)
Q Consensus 93 ---------------------p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe 151 (957)
+..-.+-=.++.|++..+..-++..|.-+|.+..-....-+..-|++|.+..++..+..
T Consensus 152 ~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~hq~~~~~~~~~s~a~~~~ 231 (549)
T KOG4660|consen 152 MGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGMLSPTRSSILLEHISSVDGSSPGRETPLLNHQRFVEFADNRSYAFSEP 231 (549)
T ss_pred chhcccchhhhhccchhhcCCCCCCcCCcceeeeccchhhhhhhcchhccCccccccccchhhhhhhhhccccchhhccc
Confidence 01111122234488887776666777777766551111112357888888888866665
Q ss_pred HhCCceeCCeEEEEEEccC
Q 002168 152 NINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 152 ~LnG~~i~Gr~I~V~~ak~ 170 (957)
.. |..+.+....+.++..
T Consensus 232 ~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 232 RG-GFLISNSSGVITFSGP 249 (549)
T ss_pred CC-ceecCCCCceEEecCC
Confidence 33 6666666666665543
No 83
>smart00362 RRM_2 RNA recognition motif.
Probab=98.98 E-value=2.1e-09 Score=90.67 Aligned_cols=68 Identities=46% Similarity=0.763 Sum_probs=64.3
Q ss_pred ceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC----CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG----NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 99 ~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr----G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
+|+|+|||..+++++|+++|+.||.|..+.+..++ ++|||+|.+.++|.+|++.+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999886 899999999999999999999999999998873
No 84
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=1.3e-09 Score=100.68 Aligned_cols=80 Identities=24% Similarity=0.441 Sum_probs=73.1
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec---CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd---rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
|...++-|||.|||+.+|.|++.++|.+||.|..|+|-.. +|+|||.|++..||++|++.|+|..+.++.+.|.|..
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 3456789999999999999999999999999999999766 5889999999999999999999999999999999877
Q ss_pred CCc
Q 002168 170 SQP 172 (957)
Q Consensus 170 ~k~ 172 (957)
...
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 554
No 85
>smart00362 RRM_2 RNA recognition motif.
Probab=98.97 E-value=1.6e-09 Score=91.44 Aligned_cols=68 Identities=47% Similarity=0.836 Sum_probs=61.7
Q ss_pred EEEEccCCCCCcHHHHHHHhccCCCeeEEEecCC----CcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 22 NLWVGNLSADTTDADLKELFGKFGALDKVTTYSS----RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 22 tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grs----kGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
+|||+|||..+++++|+++|.+||.|..+..... +++|||+|.+.++|.+|++.+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999998885444 5999999999999999999999999999888763
No 86
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=8.6e-10 Score=115.16 Aligned_cols=74 Identities=24% Similarity=0.399 Sum_probs=65.1
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
-.-++||||||++++..++|+++|++||+|++.. ++++|||+||+|++.|.|.+|. +--+-.|.||+..|.++
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc-~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRAC-KDPNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHh-cCCCCcccccccccchh
Confidence 3457899999999999999999999999998655 7899999999999999999999 44456789998888877
Q ss_pred C
Q 002168 92 R 92 (957)
Q Consensus 92 ~ 92 (957)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 3
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1.7e-09 Score=125.27 Aligned_cols=155 Identities=23% Similarity=0.407 Sum_probs=122.5
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
.-.-+.++|++||..+++.+++++...||.+.... ++.++||||.+|++......|+.-|||..+.+++|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34567899999999999999999999999876433 578999999999999999999999999999999998877
Q ss_pred cCCCCCC-----C--ceEEcCCCc-----------------cCCH-------------HHHHHhhcccCCEeEEEEeec-
Q 002168 91 ARPAKPS-----K--HLWVGGISQ-----------------TVSK-------------EELEEGFLKFGNIEDFKFLKD- 132 (957)
Q Consensus 91 A~p~~~s-----r--~LyVgNLP~-----------------~vTe-------------edL~elFskfG~I~~VkIlrd- 132 (957)
+...... . ..-|-+|+. -+|+ |+++..+.+||.|..|.+.+.
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPY 445 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCC
Confidence 6431110 0 001111111 1222 455667789999999999877
Q ss_pred --------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 133 --------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 133 --------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
-|..||+|.+.+++++|+++|+|.+|.||.|...|....
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 256999999999999999999999999999999987543
No 88
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=2.3e-09 Score=112.32 Aligned_cols=80 Identities=29% Similarity=0.465 Sum_probs=74.2
Q ss_pred CCCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002168 92 RPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (957)
Q Consensus 92 ~p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V 165 (957)
+...++++|-|.||+.++++++|+++|.+||.|..|.+.+| +|||||.|++.+||.+||+.|||.-+..--|+|
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 34456788999999999999999999999999999999988 589999999999999999999999999999999
Q ss_pred EEccCC
Q 002168 166 DFLRSQ 171 (957)
Q Consensus 166 ~~ak~k 171 (957)
+|++++
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999864
No 89
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.92 E-value=2.1e-09 Score=116.39 Aligned_cols=81 Identities=30% Similarity=0.462 Sum_probs=71.9
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
.-.++|+|.|||+...|-||+..|.+||.|.+|. ..-+|||+||+|++.+||++|-++|+|+.+.||+|+|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3457999999999999999999999999998777 244899999999999999999999999999999999999875
Q ss_pred CCCCC
Q 002168 94 AKPSK 98 (957)
Q Consensus 94 ~~~sr 98 (957)
.-.++
T Consensus 174 rV~n~ 178 (376)
T KOG0125|consen 174 RVHNK 178 (376)
T ss_pred hhccC
Confidence 43333
No 90
>PLN03213 repressor of silencing 3; Provisional
Probab=98.92 E-value=2.1e-09 Score=120.72 Aligned_cols=77 Identities=21% Similarity=0.459 Sum_probs=70.8
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec--CCceEEEeCCH--HHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD--GNTAFVEYSRL--EDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd--rG~AFVeF~t~--edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
....+||||||++.++++||+.+|..||.|.+|.|++. ||||||+|.+. .++.+||..|||..+.|+.|+|..++.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34578999999999999999999999999999999977 68999999987 789999999999999999999998874
Q ss_pred C
Q 002168 171 Q 171 (957)
Q Consensus 171 k 171 (957)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 3
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=98.92 E-value=2.2e-09 Score=120.68 Aligned_cols=79 Identities=24% Similarity=0.421 Sum_probs=70.8
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe--cCCCcEEEEEeCCH--HHHHHHHHHhcCCccccCcccccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT--YSSRSFAFVYFKRV--EDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~--grskGyAFVeF~s~--edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
+......+||||||.++++++||+..|..||.|.+|.+ ...||||||+|.+. .++.+|+..|||..++|+.|+|..
T Consensus 5 es~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 5 SSGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred ccCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 34567789999999999999999999999999998772 33599999999987 789999999999999999999999
Q ss_pred cCC
Q 002168 91 ARP 93 (957)
Q Consensus 91 A~p 93 (957)
+++
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 875
No 92
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.92 E-value=2.5e-09 Score=113.34 Aligned_cols=74 Identities=26% Similarity=0.303 Sum_probs=67.5
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe---cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT---YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~---grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
..+.+|||+||++.+||+||++||+.||+|.+|.+ ++.+++|||+|.+.++|..|+ .|+|..|.++.|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 45689999999999999999999999999999884 445689999999999999999 999999999999998764
No 93
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=6.5e-10 Score=114.36 Aligned_cols=80 Identities=34% Similarity=0.586 Sum_probs=74.6
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
....++||||+|..+|+|.-|+..|-.||.|.+|. ..+.||||||+|...|||.+|++.||+..|.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 45678999999999999999999999999999988 678999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002168 91 ARPAKP 96 (957)
Q Consensus 91 A~p~~~ 96 (957)
++|.+.
T Consensus 87 AkP~ki 92 (298)
T KOG0111|consen 87 AKPEKI 92 (298)
T ss_pred cCCccc
Confidence 987543
No 94
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.89 E-value=6.4e-09 Score=86.65 Aligned_cols=55 Identities=40% Similarity=0.726 Sum_probs=51.8
Q ss_pred HHHhhcccCCEeEEEEeecC-CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 114 LEEGFLKFGNIEDFKFLKDG-NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 114 L~elFskfG~I~~VkIlrdr-G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
|+++|++||.|.++.+.+++ ++|||+|.+.++|+.|++.|||..++|+.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999999988 99999999999999999999999999999999986
No 95
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=4.4e-09 Score=97.15 Aligned_cols=101 Identities=27% Similarity=0.433 Sum_probs=80.7
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEec---CCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY---SSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~g---rskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
....+.|||+|||+.+|.+++-++|.+||.|..|++| .-+|.|||.|.+..||++|++.|+|..+.++.+.|-+..+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 4568899999999999999999999999999999954 4689999999999999999999999999999999988754
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFG 122 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG 122 (957)
.+..... .....+++|..+=++||
T Consensus 95 ~~~~~~~-----~~~k~~~~l~~~~~ky~ 118 (124)
T KOG0114|consen 95 EDAFKLM-----DSRKAREELSILKEKYG 118 (124)
T ss_pred HHHHHHH-----HhHHhhhHHHHHHHHhc
Confidence 3322110 11223455665556665
No 96
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.86 E-value=3.1e-09 Score=122.51 Aligned_cols=77 Identities=29% Similarity=0.525 Sum_probs=73.0
Q ss_pred CceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
+.|||||||+++++++|.++|+..|.|.++++..| +|+||++|.+.++|.+|++.|||..++|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999988 589999999999999999999999999999999999876
Q ss_pred ccc
Q 002168 172 PSR 174 (957)
Q Consensus 172 ~~r 174 (957)
+.+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 653
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.86 E-value=7.7e-09 Score=87.72 Aligned_cols=69 Identities=48% Similarity=0.866 Sum_probs=62.7
Q ss_pred EEEEccCCCCCcHHHHHHHhccCCCeeEEEecC-----CCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 22 NLWVGNLSADTTDADLKELFGKFGALDKVTTYS-----SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 22 tLfVgNLP~svTE~dL~e~FskfG~I~~V~~gr-----skGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
+|+|+|||..+++++|+++|..+|.|..+.... .+++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999888433 379999999999999999999999999999988764
No 98
>smart00360 RRM RNA recognition motif.
Probab=98.85 E-value=6.1e-09 Score=87.42 Aligned_cols=65 Identities=46% Similarity=0.814 Sum_probs=58.4
Q ss_pred EccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 25 VGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 25 VgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
|+|||..+++++|+++|.+||.|..+.. ++++++|||+|.+.++|.+|++.+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6899999999999999999999988873 3447899999999999999999999999999988763
No 99
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.85 E-value=1.5e-08 Score=85.97 Aligned_cols=69 Identities=43% Similarity=0.821 Sum_probs=64.9
Q ss_pred ceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 99 ~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
+|+|+|||..+++++|+++|+.+|.|..+.+..+ +++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999986 47899999999999999999999999999999874
No 100
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.81 E-value=1.3e-08 Score=108.04 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=67.8
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC---CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG---NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr---G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
...+|||+||++.+|+++|+++|+.||.|++|+|++++ ++|||+|++.++|+.|+ .|+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 35789999999999999999999999999999999884 68999999999999999 799999999999998654
No 101
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.79 E-value=1e-08 Score=121.08 Aligned_cols=74 Identities=32% Similarity=0.563 Sum_probs=72.0
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
.++|||||+|+..++|.||+.+|+.||+|.+|+...+++||||.+.+..||.+|+.+|++..+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999995
No 102
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=5e-10 Score=112.53 Aligned_cols=76 Identities=25% Similarity=0.504 Sum_probs=71.4
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
+...+.-|||||||+++||.||.-+|++||+|.+|. +|+++||||+.|.+..+...|++.+||..|.||.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 356788999999999999999999999999999887 89999999999999999999999999999999999997
Q ss_pred cc
Q 002168 90 FA 91 (957)
Q Consensus 90 ~A 91 (957)
..
T Consensus 111 Hv 112 (219)
T KOG0126|consen 111 HV 112 (219)
T ss_pred ec
Confidence 54
No 103
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.77 E-value=5.9e-09 Score=106.76 Aligned_cols=76 Identities=29% Similarity=0.476 Sum_probs=71.2
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
....|.|.||-+.++.++|+.+|++||.|-+|.|.+| +|||||.|....||+.|++.|+|..+.|+.|+|++++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 3568999999999999999999999999999999988 5899999999999999999999999999999999886
Q ss_pred CC
Q 002168 170 SQ 171 (957)
Q Consensus 170 ~k 171 (957)
-.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 43
No 104
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.77 E-value=7.7e-09 Score=105.94 Aligned_cols=77 Identities=36% Similarity=0.592 Sum_probs=71.2
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
+.....+|.|-||.+-++.++|..+|++||.|-+|. +..++|||||.|....||..|+++|+|.+|.|+.|+|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 345678999999999999999999999999998887 56689999999999999999999999999999999998
Q ss_pred ccC
Q 002168 90 FAR 92 (957)
Q Consensus 90 ~A~ 92 (957)
+++
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 874
No 105
>smart00360 RRM RNA recognition motif.
Probab=98.76 E-value=2.7e-08 Score=83.51 Aligned_cols=65 Identities=43% Similarity=0.758 Sum_probs=60.4
Q ss_pred EcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 102 VGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 102 VgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
|+|||..+++++|+++|+.||.|..+.+..++ ++|||+|.+.++|..|++.+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999998874 589999999999999999999999999998873
No 106
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=1.1e-08 Score=98.51 Aligned_cols=74 Identities=22% Similarity=0.520 Sum_probs=69.1
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
-++-.|||.|+...+||+||.+.|..||+|..|. ++-.||||+|+|.+.++|.+|++.+||..|.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 3456899999999999999999999999999887 5667999999999999999999999999999999999997
No 107
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=6.8e-09 Score=106.96 Aligned_cols=81 Identities=26% Similarity=0.443 Sum_probs=73.2
Q ss_pred CceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 002168 220 PSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 293 (957)
Q Consensus 220 ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~------~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A 293 (957)
.+++|+|+.+.+ +++|.-|...|-+||.|..|.+. ++||||||+|.-.|||.+||..||+.++.||.|+|.|+
T Consensus 9 ~KrtlYVGGlad-eVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLAD-EVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchH-HHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 367888888775 79999999999999999999986 67999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 002168 294 SSELAPGK 301 (957)
Q Consensus 294 ~~~~~pg~ 301 (957)
+++...+.
T Consensus 88 kP~kikeg 95 (298)
T KOG0111|consen 88 KPEKIKEG 95 (298)
T ss_pred CCccccCC
Confidence 88766544
No 108
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=2e-08 Score=107.96 Aligned_cols=75 Identities=28% Similarity=0.543 Sum_probs=70.5
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
..+-+||||+-|+++++|++|++.|+.||+|..|+ +++++|||||+|+++.+...|.+..+|..|.|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46789999999999999999999999999998776 789999999999999999999999999999999999876
Q ss_pred c
Q 002168 91 A 91 (957)
Q Consensus 91 A 91 (957)
-
T Consensus 178 E 178 (335)
T KOG0113|consen 178 E 178 (335)
T ss_pred c
Confidence 4
No 109
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=3.1e-09 Score=106.97 Aligned_cols=98 Identities=24% Similarity=0.440 Sum_probs=82.7
Q ss_pred HHHhcCCcc-ccCcccccccCCCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHH
Q 002168 73 KDALQGSDF-RGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLED 145 (957)
Q Consensus 73 L~~Lng~~I-~Gr~I~V~~A~p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~ed 145 (957)
+..||...+ .|-.=+.+|...-+.+..|||||||++.||.||.-.|++||.|.+|.+++| +||||+.|++..+
T Consensus 10 i~~lne~Elq~g~~~~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRS 89 (219)
T KOG0126|consen 10 IQKLNERELQLGIADKKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRS 89 (219)
T ss_pred HHHhhHHhhccccccccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccc
Confidence 344554443 122225677777788999999999999999999999999999999999999 4789999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEEccC
Q 002168 146 AAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 146 A~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
-..|+..|||..|.||.|+|+....
T Consensus 90 TILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 90 TILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred eEEEEeccCCceecceeEEeeeccc
Confidence 9999999999999999999986543
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=9.2e-08 Score=109.47 Aligned_cols=138 Identities=22% Similarity=0.396 Sum_probs=108.3
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE---------ecCCCc---EEEEEeCCHHHHHHHHHHhcCC--
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT---------TYSSRS---FAFVYFKRVEDAKAAKDALQGS-- 79 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~---------~grskG---yAFVeF~s~edA~~AL~~Lng~-- 79 (957)
....+=++.||||+||.+++|++|...|..||.+. |. .-..+| |+|+.|+++.....-|..+...
T Consensus 253 ~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~ 331 (520)
T KOG0129|consen 253 YRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEG 331 (520)
T ss_pred CCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhccc
Confidence 34466789999999999999999999999999864 22 111355 9999999999988877655321
Q ss_pred --c-------cccCccccccc------------CCCCCCCceEEcCCCccCCHHHHHHhhc-ccCCEeEEEEeec-----
Q 002168 80 --D-------FRGNPIKIEFA------------RPAKPSKHLWVGGISQTVSKEELEEGFL-KFGNIEDFKFLKD----- 132 (957)
Q Consensus 80 --~-------I~Gr~I~V~~A------------~p~~~sr~LyVgNLP~~vTeedL~elFs-kfG~I~~VkIlrd----- 132 (957)
+ ++.+.++|..- .+-++.++||||+||.-++.++|..+|+ -||.|..+-|-.|
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 1 22333444322 1345678999999999999999999999 6999998888777
Q ss_pred -CCceEEEeCCHHHHHHHHHH
Q 002168 133 -GNTAFVEYSRLEDAAEALKN 152 (957)
Q Consensus 133 -rG~AFVeF~t~edA~kAIe~ 152 (957)
+|.|=|.|.+..+..+||..
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 58899999999999999964
No 111
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.71 E-value=1.9e-08 Score=116.05 Aligned_cols=73 Identities=26% Similarity=0.529 Sum_probs=70.3
Q ss_pred CEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 21 SNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
++|||||||++++|++|.++|++.|.|.+++ +|+.+||||++|.+.++|..|++.|||..+.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 9999999999999999999999999999888 788999999999999999999999999999999999999853
No 112
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=1.1e-08 Score=122.60 Aligned_cols=160 Identities=23% Similarity=0.426 Sum_probs=142.1
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
+..+...+++||++||+..+++.+|+..|..+|.|.+|. .+....||||.|.+...+-.|.-++.+..|....++
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 345567899999999999999999999999999998777 344567999999999999999999999999888888
Q ss_pred ccccCC-CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCC--eEEE
Q 002168 88 IEFARP-AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG--EQLR 164 (957)
Q Consensus 88 V~~A~p-~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~G--r~I~ 164 (957)
+.+..+ ...++.+|+++|...+....|...|..||.|..|.+....-+|||.|++...|..|++.|.|..|+| +.++
T Consensus 445 ~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 445 IGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 888763 4457899999999999999999999999999999988888899999999999999999999999986 7799
Q ss_pred EEEccCCc
Q 002168 165 VDFLRSQP 172 (957)
Q Consensus 165 V~~ak~k~ 172 (957)
|.|+....
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 99887543
No 113
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=8.5e-08 Score=103.15 Aligned_cols=84 Identities=24% Similarity=0.379 Sum_probs=75.0
Q ss_pred CCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 002168 217 DGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI 290 (957)
Q Consensus 217 ~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~------~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V 290 (957)
..+|-++|||.-++ ++++|..|+..|+.||.|++|+++ +++|||||+|.++.+..+|.+..+|..|+|++|.|
T Consensus 97 ~gDPy~TLFv~RLn-ydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 97 IGDPYKTLFVARLN-YDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred cCCccceeeeeecc-ccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 45778888888777 479999999999999999999997 46899999999999999999999999999999999
Q ss_pred EeecCCCCCCC
Q 002168 291 MFSSSELAPGK 301 (957)
Q Consensus 291 ~~A~~~~~pg~ 301 (957)
.+-+-...++=
T Consensus 176 DvERgRTvkgW 186 (335)
T KOG0113|consen 176 DVERGRTVKGW 186 (335)
T ss_pred Eeccccccccc
Confidence 99877776653
No 114
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.66 E-value=1.3e-06 Score=102.23 Aligned_cols=151 Identities=15% Similarity=0.096 Sum_probs=122.3
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE-----ecCC-CcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSS-RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~-----~grs-kGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
...+.+-+.+++++.++.|+++||... .|..+. .+.+ .|.++|+|....++.+|+ +.|...+..|.++|...
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~-~rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAF-TRNPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHH-hcCchhhhhcceeecCC
Confidence 456788889999999999999999865 243222 3444 899999999999999999 78888888888888654
Q ss_pred C------------------------------------------CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEE-E
Q 002168 92 R------------------------------------------PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF-K 128 (957)
Q Consensus 92 ~------------------------------------------p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~V-k 128 (957)
. |.....+|||..||..+++.++.++|.+...|++. .
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 2 12335799999999999999999999998888884 4
Q ss_pred Eeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 129 FLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 129 Ilrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
|.+. ++.|||+|..++++..|...-+.+.++.+.|+|.-...
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 4322 46799999999999999988788888999999986553
No 115
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=2.8e-08 Score=104.02 Aligned_cols=73 Identities=27% Similarity=0.428 Sum_probs=65.3
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
-.+||||||++...+|+|++.|++||+|++..++.| ||+|||+|.+.++|.+|++.-| -.|+||+..++.+.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 468999999999999999999999999999999987 5899999999999999997643 478999999887754
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=98.60 E-value=1.3e-07 Score=82.83 Aligned_cols=55 Identities=24% Similarity=0.494 Sum_probs=48.8
Q ss_pred HHHHHHHHh----hcCCeEEEE-E-e-------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 002168 236 EQMLHNAMI----LFGEIERIK-S-Y-------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI 290 (957)
Q Consensus 236 EeeLr~~Fs----~fG~V~~Vk-I-~-------~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V 290 (957)
+++|+++|+ .||.|.+|. + + .++|+|||+|.+.++|.+|++.|||+.+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999885 3 2 24899999999999999999999999999999986
No 117
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=5.9e-08 Score=93.58 Aligned_cols=76 Identities=25% Similarity=0.524 Sum_probs=70.3
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
..-|||.++-..+|+++|.+.|..||+|+.|.+..| +|||.|+|++.++|..|+..+||..+.|..|.|.|+-.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 356999999999999999999999999999998876 47899999999999999999999999999999999876
Q ss_pred Cc
Q 002168 171 QP 172 (957)
Q Consensus 171 k~ 172 (957)
+.
T Consensus 152 ~g 153 (170)
T KOG0130|consen 152 KG 153 (170)
T ss_pred cC
Confidence 54
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.51 E-value=1.5e-07 Score=111.41 Aligned_cols=78 Identities=26% Similarity=0.592 Sum_probs=74.7
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccc
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~r 174 (957)
+++||||+|+..+++.||.++|+.||.|++|+++..+++|||.+....+|.+|+..|+...+.++.|+|.|+..+..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999877543
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.46 E-value=1.1e-06 Score=102.81 Aligned_cols=191 Identities=13% Similarity=-0.026 Sum_probs=113.9
Q ss_pred ceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 99 ~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
.+-+.+.+++..+.|++++|..- .|..+.|..+ .|.++|+|....++.+|++ -|...+-.|.+.|.......
T Consensus 313 y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~~ 390 (944)
T KOG4307|consen 313 YNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNLG 390 (944)
T ss_pred eeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCccc
Confidence 45567888889999999998642 2333333333 3679999999999999985 34456667777776544322
Q ss_pred cccCCCCCCCCCCCC-CccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEE
Q 002168 173 SRREQWPNSHDARDG-PIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIER 251 (957)
Q Consensus 173 ~rr~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~ 251 (957)
. .+......... ....+..+............ ............+|++.-++ +.+++..+.++|...-.|++
T Consensus 391 ~---~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~---gq~vp~P~~ag~~lyv~~lP-~~t~~~~~v~~f~~~~~Ved 463 (944)
T KOG4307|consen 391 R---NGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRP---GQNVPFPGGAGGALYVFQLP-VMTPIVPPVNKFMGAAAVED 463 (944)
T ss_pred c---ccCccccccCCCCcccccCCCCCCCcccccCC---CCCCCCCCCccceEEeccCC-ccccccchhhhhhhhhhhhh
Confidence 1 11111111111 11111111111111000000 00011123345666666555 45888899999998777776
Q ss_pred -EEEe-----CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCC
Q 002168 252 -IKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 298 (957)
Q Consensus 252 -VkI~-----~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~~ 298 (957)
|.+- +-++.|||.|..++++.+|...-+...+..+.|+|.-+..+.+
T Consensus 464 ~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 464 FIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred eeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 5553 2368999999999999999776666667778899977655444
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=3.2e-08 Score=118.30 Aligned_cols=217 Identities=17% Similarity=0.209 Sum_probs=171.3
Q ss_pred CCCCCEEEEccCCCCCcHH-HHHHHhccCCCeeEEEecC------CCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 17 APPSSNLWVGNLSADTTDA-DLKELFGKFGALDKVTTYS------SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~-dL~e~FskfG~I~~V~~gr------skGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
........+.++-+...+. ..+..|..+|.|+.|+... .-.++++.+....++..|. ...+.-+.++.+.+.
T Consensus 568 ~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~ 646 (881)
T KOG0128|consen 568 PLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVG 646 (881)
T ss_pred hhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCC
Confidence 4456777888888887666 5778999999999888322 1237889999999999998 778888889988888
Q ss_pred ccCCCC-------------CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEe--ec----CCceEEEeCCHHHHHHHH
Q 002168 90 FARPAK-------------PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL--KD----GNTAFVEYSRLEDAAEAL 150 (957)
Q Consensus 90 ~A~p~~-------------~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIl--rd----rG~AFVeF~t~edA~kAI 150 (957)
.+++.. ...++||.||+..+.+.+|...|..+|.++.+.+. .+ +|.||++|...+++.+||
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhh
Confidence 876432 13579999999999999999999999988776654 11 688999999999999999
Q ss_pred HHhCCceeCCeEEEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCC
Q 002168 151 KNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPP 230 (957)
Q Consensus 151 e~LnG~~i~Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpp 230 (957)
....++.++ +..+++.+++
T Consensus 727 ~f~d~~~~g-------------------------------------------------------------K~~v~i~g~p 745 (881)
T KOG0128|consen 727 AFRDSCFFG-------------------------------------------------------------KISVAISGPP 745 (881)
T ss_pred hhhhhhhhh-------------------------------------------------------------hhhhheeCCC
Confidence 643332211 2234454544
Q ss_pred CCCCCHHHHHHHHhhcCCeEEEEEe-----CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 231 SVQMDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 231 s~~vtEeeLr~~Fs~fG~V~~VkI~-----~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
+..|+++|+.+++++|.++++++. +.+|.|+|.|.+..+|.++....++..+.-+.+.|..++.+
T Consensus 746 -f~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 746 -FQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred -CCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 569999999999999999988765 45789999999999999999988888888888888776653
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.40 E-value=4.3e-07 Score=99.62 Aligned_cols=80 Identities=24% Similarity=0.473 Sum_probs=71.9
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHh-cCCccccCcccccccC
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDAL-QGSDFRGNPIKIEFAR 92 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~L-ng~~I~Gr~I~V~~A~ 92 (957)
.-+.....+|||+||-..++|.||+++|-+||+|++|+.-..+++|||+|.+.+.|+.|.+++ +...|.|++|+|.|.+
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 344577899999999999999999999999999999998888899999999999999988765 4456899999999998
Q ss_pred C
Q 002168 93 P 93 (957)
Q Consensus 93 p 93 (957)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 6
No 122
>smart00361 RRM_1 RNA recognition motif.
Probab=98.39 E-value=4.8e-07 Score=79.16 Aligned_cols=55 Identities=33% Similarity=0.545 Sum_probs=49.2
Q ss_pred HHHHHHHhc----cCCCeeEEE-------e--cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 34 DADLKELFG----KFGALDKVT-------T--YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 34 E~dL~e~Fs----kfG~I~~V~-------~--grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
+++|+++|+ +||.|.+|. + +.++|||||+|.+.++|.+|++.|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999998773 2 667999999999999999999999999999998875
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.37 E-value=1.1e-07 Score=113.84 Aligned_cols=140 Identities=24% Similarity=0.281 Sum_probs=117.0
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
.+..+++||.||+..+.+.||...|..+|.+..|. .++-+|+|||.|...++|.+||.-..+..+ |
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g------- 735 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G------- 735 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h-------
Confidence 35668899999999999999999999998776544 567789999999999999999955444333 3
Q ss_pred cCCCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002168 91 ARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (957)
Q Consensus 91 A~p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V 165 (957)
...|+|.|.|+..|+++++.+|.++|.+.+.+++.. +|.|||.|.++.+|.+++...++..++-+.+.|
T Consensus 736 ------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v 809 (881)
T KOG0128|consen 736 ------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEV 809 (881)
T ss_pred ------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccc
Confidence 356889999999999999999999999998876644 578999999999999999888877777677777
Q ss_pred EEccC
Q 002168 166 DFLRS 170 (957)
Q Consensus 166 ~~ak~ 170 (957)
..+..
T Consensus 810 ~vsnp 814 (881)
T KOG0128|consen 810 QVSNP 814 (881)
T ss_pred cccCC
Confidence 66544
No 124
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.36 E-value=1.1e-07 Score=98.50 Aligned_cols=130 Identities=28% Similarity=0.392 Sum_probs=109.2
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
+...++|||+|+-..|+|+-|.++|-+.|+|..|++ ++.| ||||+|.++-...-|++-+||..+.+++++|.+-
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 467899999999999999999999999999998883 2234 9999999999999999999999999999998765
Q ss_pred CCCCCCCceEEcC----CCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCce
Q 002168 92 RPAKPSKHLWVGG----ISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQ 157 (957)
Q Consensus 92 ~p~~~sr~LyVgN----LP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~ 157 (957)
. |+ |...++++.+++.|+..|.++.+++..+ ++++|+.+...-..-.++....+..
T Consensus 85 ~----------G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 85 C----------GNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred c----------CCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 2 33 5567899999999999999999988755 4679998877777777776655543
No 125
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=1.2e-06 Score=96.25 Aligned_cols=77 Identities=26% Similarity=0.539 Sum_probs=70.9
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHH-hCCceeCCeEEEEEEccC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKN-INGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~-LnG~~i~Gr~I~V~~ak~ 170 (957)
+....+|||++|...+++.+|++.|.+||.|+++.+...+++|||+|.+.++|+.|.+. +|...|.|..|.|.|...
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 45568999999999999999999999999999999999999999999999999998875 566688999999999987
No 126
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.2e-06 Score=96.06 Aligned_cols=80 Identities=26% Similarity=0.409 Sum_probs=69.7
Q ss_pred CCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCCC------cEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 002168 216 RDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSR------NYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 289 (957)
Q Consensus 216 ~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~sr------G~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~ 289 (957)
...+|.+||||--+.. .+++++|.-+|+.||.|..+.|++++ .||||+|++.+++.+|.-+|++..|++++|+
T Consensus 234 d~~PPeNVLFVCKLNP-VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNP-VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred ccCCCcceEEEEecCC-cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 3567788888866554 37889999999999999999998653 5999999999999999999999999999999
Q ss_pred EEeecCC
Q 002168 290 IMFSSSE 296 (957)
Q Consensus 290 V~~A~~~ 296 (957)
|.|+.+-
T Consensus 313 VDFSQSV 319 (479)
T KOG0415|consen 313 VDFSQSV 319 (479)
T ss_pred eehhhhh
Confidence 9998653
No 127
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1e-05 Score=93.12 Aligned_cols=156 Identities=15% Similarity=0.252 Sum_probs=107.1
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEe---------ecCC---ceEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL---------KDGN---TAFVEYSRLEDAAEALKNINGRQIGGEQL 163 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIl---------rdrG---~AFVeF~t~edA~kAIe~LnG~~i~Gr~I 163 (957)
-+++||||+||.+++|++|...|..||.+.- ... ..+| |+|+-|+++.....-+.++.- +..++
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 3689999999999999999999999997632 222 1146 899999999999888776433 44444
Q ss_pred EEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHH
Q 002168 164 RVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAM 243 (957)
Q Consensus 164 ~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~F 243 (957)
.+.........+.. ....+ -.. ...-........++++++|||.++. -++.++|..+|
T Consensus 334 yf~vss~~~k~k~V--QIrPW---~la----------------Ds~fv~d~sq~lDprrTVFVGgvpr-pl~A~eLA~im 391 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEV--QIRPW---VLA----------------DSDFVLDHNQPIDPRRTVFVGGLPR-PLTAEELAMIM 391 (520)
T ss_pred EEEEecCcccccce--eEEee---Eec----------------cchhhhccCcccCccceEEecCCCC-cchHHHHHHHH
Confidence 44332221111100 00000 000 0000112233667899999999886 69999999999
Q ss_pred h-hcCCeEEEEEeCC------CcEEEEEeCCHHHHHHHHHH
Q 002168 244 I-LFGEIERIKSYPS------RNYSFVEFRSVDEARRAKEG 277 (957)
Q Consensus 244 s-~fG~V~~VkI~~s------rG~AFVeF~T~edA~~AIe~ 277 (957)
+ .||.|..+-|..+ +|-|=|+|.+...=.+||.+
T Consensus 392 d~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 392 EDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 9 8999998888643 79999999999999999875
No 128
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=8.1e-07 Score=102.69 Aligned_cols=175 Identities=23% Similarity=0.289 Sum_probs=115.7
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPS 173 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~ 173 (957)
-..++|+|-|||..|++++|+++|+.||+|+.|+.-.. ++.+||+|-+..+|++|+++|++..|.|+.|+ .....
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~ 148 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGA 148 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcc
Confidence 34689999999999999999999999999999776555 57899999999999999999999999999888 21111
Q ss_pred ccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEE
Q 002168 174 RREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIK 253 (957)
Q Consensus 174 rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~Vk 253 (957)
++..+.... . .+....... . .......-+.--++..+.|. .+...++..|..+|.+.. +
T Consensus 149 ~~~~~~~~~----~-------~~~~~~~~p---~----a~s~pgg~~~~~~~g~l~P~--~s~~~~~~~~~~~~~~~~-~ 207 (549)
T KOG4660|consen 149 RRAMGLQSG----T-------SFLNHFGSP---L----ANSPPGGWPRGQLFGMLSPT--RSSILLEHISSVDGSSPG-R 207 (549)
T ss_pred cccchhccc----c-------hhhhhccch---h----hcCCCCCCcCCcceeeeccc--hhhhhhhcchhccCcccc-c
Confidence 111111100 0 000000000 0 00000111111222225554 555666777778888776 4
Q ss_pred Ee-CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 002168 254 SY-PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 295 (957)
Q Consensus 254 I~-~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~ 295 (957)
.. .-+..-|++|.+..++..+...+ |..+.+....+.++..
T Consensus 208 ~~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 208 ETPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred cccchhhhhhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 43 22447888998888887776644 7888888888888866
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.18 E-value=1.4e-06 Score=105.02 Aligned_cols=159 Identities=19% Similarity=0.301 Sum_probs=129.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC-----CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG-----NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr-----G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
...+++||+|||...+++.+|+..|..+|.|++|.|...+ .++||.|.+...+-+|...+.+..|..-.+++.+.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 3457899999999999999999999999999999887552 46999999999999999888887665544444432
Q ss_pred cCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCC
Q 002168 169 RSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGE 248 (957)
Q Consensus 169 k~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~ 248 (957)
.. ...+++-+|++.+.. -+....|...|..||.
T Consensus 449 ~~----------------------------------------------kst~ttr~~sgglg~-w~p~~~l~r~fd~fGp 481 (975)
T KOG0112|consen 449 QP----------------------------------------------KSTPTTRLQSGGLGP-WSPVSRLNREFDRFGP 481 (975)
T ss_pred cc----------------------------------------------ccccceeeccCCCCC-CChHHHHHHHhhccCc
Confidence 21 223355566766554 3677788999999999
Q ss_pred eEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCC--CeEEEEeecCCCCC
Q 002168 249 IERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFND--PRITIMFSSSELAP 299 (957)
Q Consensus 249 V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~G--r~I~V~~A~~~~~p 299 (957)
|..|.+-..--|++|.|.+...|+.|++.|.|..|+| +++.|.|+......
T Consensus 482 ir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 482 IRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred ceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 9999998777899999999999999999999999986 78999999776554
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.16 E-value=2.9e-06 Score=97.32 Aligned_cols=76 Identities=24% Similarity=0.521 Sum_probs=70.3
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
.++|||.+|+..+...||+++|++||+|...+++.+ +.|+||++.+.++|.+||+.|+.+.+.|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 478999999999999999999999999999999877 45899999999999999999999999999999998875
Q ss_pred Cc
Q 002168 171 QP 172 (957)
Q Consensus 171 k~ 172 (957)
..
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 54
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.16 E-value=3.1e-06 Score=97.00 Aligned_cols=78 Identities=29% Similarity=0.529 Sum_probs=69.2
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
..-+++|||.+|...+...||+.+|++||.|...+ ..-.+.|+||++.+.++|.+||+.|+.+.|+|+-|.|+.
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 44688999999999999999999999999998555 233578999999999999999999999999999999999
Q ss_pred cCCC
Q 002168 91 ARPA 94 (957)
Q Consensus 91 A~p~ 94 (957)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8743
No 132
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=3.3e-06 Score=92.59 Aligned_cols=80 Identities=26% Similarity=0.457 Sum_probs=73.9
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCC------ceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGN------TAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG------~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
-.++.+.|||.-|.+-+|.+||+-+|+.||.|.+|.+++|+. +|||+|++.++.++|.-.|++..|..+.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 356789999999999999999999999999999999999963 69999999999999999999999999999999
Q ss_pred EccCCc
Q 002168 167 FLRSQP 172 (957)
Q Consensus 167 ~ak~k~ 172 (957)
|+.+-.
T Consensus 315 FSQSVs 320 (479)
T KOG0415|consen 315 FSQSVS 320 (479)
T ss_pred hhhhhh
Confidence 987543
No 133
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.07 E-value=7.5e-06 Score=84.74 Aligned_cols=78 Identities=19% Similarity=0.344 Sum_probs=69.3
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccC-CCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKF-GALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~Fskf-G~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
......++|..+|..+-+.++..+|.++ |.|..++ +|.++|||||+|.+.+.|+-|.+.||+..|.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 4567789999999999999999999998 6666655 78899999999999999999999999999999999998
Q ss_pred ccCCC
Q 002168 90 FARPA 94 (957)
Q Consensus 90 ~A~p~ 94 (957)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87544
No 134
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.05 E-value=4.7e-06 Score=92.25 Aligned_cols=154 Identities=24% Similarity=0.369 Sum_probs=123.2
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
...+++|++++-..+.+.++..++..+|.+.... ...++++++|.|...+.+..||.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4689999999999999999999999999665443 4668999999999999999999443333555554443332
Q ss_pred CC-------------CCCCCceE-EcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHH
Q 002168 92 RP-------------AKPSKHLW-VGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALK 151 (957)
Q Consensus 92 ~p-------------~~~sr~Ly-VgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe 151 (957)
.. .....+++ |++++..+++++|+..|..+|.|..+++..+ +++|||+|....++..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 21 22344666 9999999999999999999999999988766 4789999999999999997
Q ss_pred HhCCceeCCeEEEEEEccCCc
Q 002168 152 NINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 152 ~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
. ....+.++.+.+.+.....
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred c-ccCcccCcccccccCCCCc
Confidence 7 7888999999998776543
No 135
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.97 E-value=2.1e-06 Score=89.15 Aligned_cols=135 Identities=20% Similarity=0.233 Sum_probs=103.7
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC----CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG----NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr----G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
....++|||+|+...++|+-|.++|...|+|..|+|..++ .||||.|+++-...-|++.+||..+.++.+.|.+-.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3457899999999999999999999999999999998764 479999999999999999999999999999888643
Q ss_pred CCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCe
Q 002168 170 SQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEI 249 (957)
Q Consensus 170 ~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V 249 (957)
...... + . ..++++.+.+.|+.-|.+
T Consensus 86 G~shap----------------------------------------------------l-d-~r~~~ei~~~v~s~a~p~ 111 (267)
T KOG4454|consen 86 GNSHAP----------------------------------------------------L-D-ERVTEEILYEVFSQAGPI 111 (267)
T ss_pred CCCcch----------------------------------------------------h-h-hhcchhhheeeecccCCC
Confidence 322000 0 0 136777777888888888
Q ss_pred EEEEEe-----CCCcEEEEEeCCHHHHHHHHHHhCCCe
Q 002168 250 ERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRL 282 (957)
Q Consensus 250 ~~VkI~-----~srG~AFVeF~T~edA~~AIe~LNGk~ 282 (957)
..+++. +.+.++|+.+.-.-+.=.|+....+..
T Consensus 112 ~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 112 EGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred CCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 877774 356788888766555555555444443
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.92 E-value=1e-05 Score=85.75 Aligned_cols=161 Identities=19% Similarity=0.258 Sum_probs=109.6
Q ss_pred CCCCceEEcCCCccCCHHH-H--HHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 95 KPSKHLWVGGISQTVSKEE-L--EEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeed-L--~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
..-...+++++-..+..+- | ...|+.|-.....++.++ ++++|+.|.....-.++...-++++++-..|++.
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a 173 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLA 173 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeec
Confidence 3445667777777766554 3 677877777766676666 3679999988877777776666666665554433
Q ss_pred EccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhc
Q 002168 167 FLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILF 246 (957)
Q Consensus 167 ~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~f 246 (957)
-...-. .. . ..+-+....+|++..+.. +++++-|...|.+|
T Consensus 174 ~gtswe--dP---s--------------------------------l~ew~~~DfRIfcgdlgN--evnd~vl~raf~Kf 214 (290)
T KOG0226|consen 174 AGTSWE--DP---S--------------------------------LAEWDEDDFRIFCGDLGN--EVNDDVLARAFKKF 214 (290)
T ss_pred cccccC--Cc---c--------------------------------cccCccccceeecccccc--cccHHHHHHHHHhc
Confidence 211110 00 0 000122234555444443 49999999999999
Q ss_pred CCeEEEEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 002168 247 GEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 294 (957)
Q Consensus 247 G~V~~VkI~------~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~ 294 (957)
-.....+++ +++||+||.|.+.+++.+|+..|||+.++.+.|+++-+.
T Consensus 215 psf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 215 PSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred cchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 765555554 578999999999999999999999999999999986553
No 137
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.92 E-value=2.8e-05 Score=80.63 Aligned_cols=76 Identities=25% Similarity=0.361 Sum_probs=64.2
Q ss_pred CceEEEecCCCCCCCCHHHHHHHHhhc-CCeEEEEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 002168 220 PSKILWVGYPPSVQMDEQMLHNAMILF-GEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 292 (957)
Q Consensus 220 ps~VL~Vgnpps~~vtEeeLr~~Fs~f-G~V~~VkI~------~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~ 292 (957)
...++++.-++. .+.+.++..+|.+| |.|.++++- .++|||||+|++.+.|.-|.+.||+..|.|+.|.|.+
T Consensus 48 ~~g~~~~~~~p~-g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHIPH-GFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred Cccceeeccccc-chhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345666666663 58899999999998 677888874 4689999999999999999999999999999999999
Q ss_pred ecCC
Q 002168 293 SSSE 296 (957)
Q Consensus 293 A~~~ 296 (957)
...+
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8655
No 138
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.91 E-value=1.6e-05 Score=93.85 Aligned_cols=78 Identities=32% Similarity=0.512 Sum_probs=71.4
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE---------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT---------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNP 85 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~---------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~ 85 (957)
...+-.++|||+||++.++|+.|...|..||+|.+|+ ..+.+.|+||-|.+..||.+|+++|+|.++.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 3356788999999999999999999999999999888 3446789999999999999999999999999999
Q ss_pred ccccccC
Q 002168 86 IKIEFAR 92 (957)
Q Consensus 86 I~V~~A~ 92 (957)
+++.|++
T Consensus 249 ~K~gWgk 255 (877)
T KOG0151|consen 249 MKLGWGK 255 (877)
T ss_pred eeecccc
Confidence 9999985
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.91 E-value=2.3e-05 Score=84.36 Aligned_cols=87 Identities=39% Similarity=0.508 Sum_probs=73.8
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
......+|+|.|||+.|+++||+++|..||.+..+. .+++.|.|-|.|...+||..|++.+++..+.|+.++|..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 345568899999999999999999999999877666 677889999999999999999999999999999999888
Q ss_pred cCCCCCCCceEE
Q 002168 91 ARPAKPSKHLWV 102 (957)
Q Consensus 91 A~p~~~sr~LyV 102 (957)
.........+-|
T Consensus 159 i~~~~~~~r~~~ 170 (243)
T KOG0533|consen 159 ISSPSQSKRLPV 170 (243)
T ss_pred ecCccccccccc
Confidence 754444444433
No 140
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.90 E-value=1.5e-05 Score=88.24 Aligned_cols=166 Identities=17% Similarity=0.264 Sum_probs=124.4
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEee------cCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLK------DGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlr------drG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
...++|++++...+.+.++..++..+|.+....+.. .++++++.|...+.+..|+.........++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 467899999999999999999999999766555443 26899999999999999996554445556555554433
Q ss_pred CCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCe
Q 002168 170 SQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEI 249 (957)
Q Consensus 170 ~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V 249 (957)
....+.. ............+++++++.. +.+++++|+.+|..+|.|
T Consensus 167 ~~~~~~~---------------------------------n~~~~~~~~~s~~~~~~~~~~-f~~~~d~~~~~~~~~~~i 212 (285)
T KOG4210|consen 167 RRGLRPK---------------------------------NKLSRLSSGPSDTIFFVGELD-FSLTRDDLKEHFVSSGEI 212 (285)
T ss_pred ccccccc---------------------------------chhcccccCccccceeecccc-cccchHHHhhhccCcCcc
Confidence 3221000 011111234445667677766 579999999999999999
Q ss_pred EEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 250 ERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 250 ~~VkI~~------srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
..+++.. .+|+|+|+|.+...+..++.. +...+.++.+.|.+....
T Consensus 213 ~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 213 TSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred eeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 9999863 578999999999999999887 888899999999887544
No 141
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.89 E-value=2e-06 Score=95.92 Aligned_cols=152 Identities=24% Similarity=0.421 Sum_probs=124.7
Q ss_pred CEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCc-cccCcccccccCCCC-CCC
Q 002168 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD-FRGNPIKIEFARPAK-PSK 98 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~-I~Gr~I~V~~A~p~~-~sr 98 (957)
+.||++||.+.++.+||..+|.....-.+=.+--..|||||...+...|.+|++.++|.. +.|+.+.+..+-+.+ .++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsr 81 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSR 81 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhh
Confidence 579999999999999999999754110111122246899999999999999999999965 899999999987654 367
Q ss_pred ceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-CC--ceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-GN--TAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 99 ~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-rG--~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
++-|.|+|+...++.|..++..||.++.|..... .. ..-|+|.+.+.++.||..++|..+....++|.|.-...
T Consensus 82 k~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 82 KIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred hhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 8999999999999999999999999998876432 22 24578899999999999999999999999999876543
No 142
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.82 E-value=3.1e-05 Score=91.50 Aligned_cols=78 Identities=23% Similarity=0.418 Sum_probs=71.2
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec---------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd---------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~ 164 (957)
.+...+|||+||++.++++.|...|..||+|..++|+.- +++|||-|-+..||++|++.|+|..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 344679999999999999999999999999999999844 57899999999999999999999999999999
Q ss_pred EEEccCC
Q 002168 165 VDFLRSQ 171 (957)
Q Consensus 165 V~~ak~k 171 (957)
+.|.+.-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998643
No 143
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.74 E-value=3.1e-05 Score=82.25 Aligned_cols=149 Identities=19% Similarity=0.353 Sum_probs=108.4
Q ss_pred CCCEEEEccCCCCCcHHH-H--HHHhccCCCeeE-----EEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 19 PSSNLWVGNLSADTTDAD-L--KELFGKFGALDK-----VTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~d-L--~e~FskfG~I~~-----V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
.-...+++++-..+..+- | -..|+.+-.+.. -+-+.-++++|+.|+....-.++-.+-++.+++-..|++.-
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 344455666655554433 2 345554433221 11355678999999987777777666666677666666532
Q ss_pred c----CC-----CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCC
Q 002168 91 A----RP-----AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNING 155 (957)
Q Consensus 91 A----~p-----~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG 155 (957)
. ++ .....+||.|.|..+++.+.|...|++|-.-...+++++ +|++||.|.+..|+..|+++|+|
T Consensus 175 gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~g 254 (290)
T KOG0226|consen 175 GTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNG 254 (290)
T ss_pred ccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcc
Confidence 2 22 445789999999999999999999999977666666666 58999999999999999999999
Q ss_pred ceeCCeEEEEEE
Q 002168 156 RQIGGEQLRVDF 167 (957)
Q Consensus 156 ~~i~Gr~I~V~~ 167 (957)
+.++.+.|++.-
T Consensus 255 kyVgsrpiklRk 266 (290)
T KOG0226|consen 255 KYVGSRPIKLRK 266 (290)
T ss_pred cccccchhHhhh
Confidence 999999988763
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.59 E-value=0.0002 Score=82.80 Aligned_cols=72 Identities=26% Similarity=0.398 Sum_probs=62.5
Q ss_pred CceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
..|||+|||.+++.++|+++|+.||.|+...|.... .||||+|++.+++..||+.- -..++++++.|+--+.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 469999999999999999999999999988776542 68999999999999999654 6788999999985543
No 145
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.56 E-value=1.1e-05 Score=90.14 Aligned_cols=152 Identities=21% Similarity=0.367 Sum_probs=118.7
Q ss_pred CceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEEccCCccccC
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGR-QIGGEQLRVDFLRSQPSRRE 176 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~-~i~Gr~I~V~~ak~k~~rr~ 176 (957)
+.+|++||.+.++..||+.+|.....-..-.++-..|++||.+.+...|.+|++.++|+ .+.|+.+.|..+-.+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrs- 80 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRS- 80 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHh-
Confidence 57899999999999999999987643333344555689999999999999999999998 7789999988766554221
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeC
Q 002168 177 QWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP 256 (957)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~ 256 (957)
.++-+.+.++ ...++.|..+...||.|+.|....
T Consensus 81 --------------------------------------------rk~Qirnipp--ql~wevld~Ll~qyg~ve~~eqvn 114 (584)
T KOG2193|consen 81 --------------------------------------------RKIQIRNIPP--QLQWEVLDSLLAQYGTVENCEQVN 114 (584)
T ss_pred --------------------------------------------hhhhHhcCCH--HHHHHHHHHHHhccCCHhHhhhhc
Confidence 1222233444 378999999999999998877642
Q ss_pred C---CcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 257 S---RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 257 s---rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
. .-..-|+|.+.+.+..||.+|||..+....++|.|.-.+
T Consensus 115 t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 115 TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 2 123446899999999999999999999999999998544
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.55 E-value=0.00025 Score=66.38 Aligned_cols=73 Identities=21% Similarity=0.355 Sum_probs=57.4
Q ss_pred CCEEEEccCCCCCcHHHHHHHhccC--CCee------EEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccc----cCccc
Q 002168 20 SSNLWVGNLSADTTDADLKELFGKF--GALD------KVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR----GNPIK 87 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~e~Fskf--G~I~------~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~----Gr~I~ 87 (957)
.+||+|+|||...|.++|.+++... |..+ +.++..+.|||||.|.+.++|....+..+|..+. .+.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3799999999999999999888743 3333 2336778999999999999999999999988764 33456
Q ss_pred ccccC
Q 002168 88 IEFAR 92 (957)
Q Consensus 88 V~~A~ 92 (957)
|.||+
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 66653
No 147
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.54 E-value=0.00036 Score=80.79 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=58.1
Q ss_pred EEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeC----C--CcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 002168 224 LWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP----S--RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 295 (957)
Q Consensus 224 L~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~----s--rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~ 295 (957)
|++.++| +++++++|+++|..||.|+...|.. . .+||||+|.+.+++..||++ +-..++|++|.|.-.+.
T Consensus 291 i~V~nlP-~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 291 IFVKNLP-PDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred eEeecCC-CCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 6676666 3699999999999999998777752 2 27999999999999999986 46778999999976543
No 148
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.53 E-value=0.00022 Score=76.98 Aligned_cols=79 Identities=27% Similarity=0.443 Sum_probs=70.0
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC-----CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG-----NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr-----G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
....+|+|.||++.|+++||+++|..||.++.+.+..++ |+|-|.|...+||.+|++.+++..+.|+.+++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 345789999999999999999999999988888877663 789999999999999999999999999999998776
Q ss_pred CCcc
Q 002168 170 SQPS 173 (957)
Q Consensus 170 ~k~~ 173 (957)
....
T Consensus 161 ~~~~ 164 (243)
T KOG0533|consen 161 SPSQ 164 (243)
T ss_pred Cccc
Confidence 5543
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.44 E-value=0.0004 Score=62.73 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=49.0
Q ss_pred CceEEcCCCccCCHHHHH----HhhcccC-CEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 98 KHLWVGGISQTVSKEELE----EGFLKFG-NIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~----elFskfG-~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
..|+|.|||.+.+...|+ +++..+| .|.+| ..+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|.|....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 358999999998877654 5666787 77766 2689999999999999999999999999999999988544
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.41 E-value=0.00036 Score=63.03 Aligned_cols=68 Identities=31% Similarity=0.446 Sum_probs=48.9
Q ss_pred CEEEEccCCCCCcHHHHH----HHhccCC-CeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 21 SNLWVGNLSADTTDADLK----ELFGKFG-ALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~----e~FskfG-~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
..|+|.|||.+.+...|+ .++..|| .|.+| ..+.|+|.|.+.+.|.+|.++|+|..+.|++|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 469999999999887655 5666886 55666 46889999999999999999999999999999999984
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.30 E-value=0.00017 Score=80.61 Aligned_cols=192 Identities=13% Similarity=0.075 Sum_probs=114.8
Q ss_pred CceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC---------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG---------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr---------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
..|.|.||.+.+|.+++..+|...|+|.++.++.+- .+|||.|.+...+..|. .|..+.+=++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 478999999999999999999999999999987642 36999999999999887 56667666666666544
Q ss_pred cCCccccC-CCCCCC--CCCCCCccCCCCCCCCCcccccC---------CCCCCcCCCCCCCCCceEEEecCCCCCCCCH
Q 002168 169 RSQPSRRE-QWPNSH--DARDGPIIGRGTGFSDNHSAYKR---------SHPQSSVGRNRDGPPSKILWVGYPPSVQMDE 236 (957)
Q Consensus 169 k~k~~rr~-~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtE 236 (957)
-....... ...... +.-.+.+...+.-+++....... +..........-..-.++++++.+.. .+..
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~-~~~l 165 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLIS-AAIL 165 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchh-hhcc
Confidence 33322111 100000 00000011111111111100000 00000111111111124556655554 4788
Q ss_pred HHHHHHHhhcCCeEEEEEe--CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 002168 237 QMLHNAMILFGEIERIKSY--PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 292 (957)
Q Consensus 237 eeLr~~Fs~fG~V~~VkI~--~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~ 292 (957)
.++.+.|..+|+|...++- ....+|.|+|......+.|+. ++|++|.-.......
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai 222 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAI 222 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhh
Confidence 8899999999999776653 345688899998888888865 678887744433333
No 152
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.29 E-value=0.00024 Score=76.50 Aligned_cols=77 Identities=27% Similarity=0.487 Sum_probs=67.9
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
........+||+|+.+.+|.+++...|+.||.|..|. .+..+|||||+|.+.+.+..|+. |++..|.|+.+.+
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 4456788999999999999999999999999997544 34578999999999999999995 9999999999999
Q ss_pred cccC
Q 002168 89 EFAR 92 (957)
Q Consensus 89 ~~A~ 92 (957)
.+.+
T Consensus 175 t~~r 178 (231)
T KOG4209|consen 175 TLKR 178 (231)
T ss_pred eeee
Confidence 8764
No 153
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.25 E-value=0.00034 Score=75.38 Aligned_cols=77 Identities=30% Similarity=0.492 Sum_probs=70.0
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
......+||+|+.+.+|.+++...|+.||.|..+.+..+ +|++||+|.+.+.+..|+. |++..+.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 456789999999999999999999999999998888776 4689999999999999997 999999999999998
Q ss_pred ccCC
Q 002168 168 LRSQ 171 (957)
Q Consensus 168 ak~k 171 (957)
.+..
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7655
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.12 E-value=0.00017 Score=80.53 Aligned_cols=136 Identities=17% Similarity=0.261 Sum_probs=105.1
Q ss_pred CEEEEccCCCCCcHHHHHHHhccCCCeeEEEec---------CCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTY---------SSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~g---------rskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
..|.|.||.+++|.+.+..+|..+|+|..+... .....|||.|.+...+..|- -|.++++-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 389999999999999999999999999888732 24568999999999998887 67777766665554332
Q ss_pred CC-----------------------------------------------------------CCCCCceEEcCCCccCCHH
Q 002168 92 RP-----------------------------------------------------------AKPSKHLWVGGISQTVSKE 112 (957)
Q Consensus 92 ~p-----------------------------------------------------------~~~sr~LyVgNLP~~vTee 112 (957)
-. ....++++|++|...+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 10 1113679999999999999
Q ss_pred HHHHhhcccCCEeEEEEeec--CCceEEEeCCHHHHHHHHHHhCCcee
Q 002168 113 ELEEGFLKFGNIEDFKFLKD--GNTAFVEYSRLEDAAEALKNINGRQI 158 (957)
Q Consensus 113 dL~elFskfG~I~~VkIlrd--rG~AFVeF~t~edA~kAIe~LnG~~i 158 (957)
++.+.|..+|.|....+... .-+|.|+|......+.|+. ++|..+
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhh
Confidence 99999999998876554322 3568899999888888885 445443
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.11 E-value=0.0011 Score=63.03 Aligned_cols=60 Identities=28% Similarity=0.384 Sum_probs=41.5
Q ss_pred CCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCC
Q 002168 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGS 79 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~ 79 (957)
++.|.|.|+...++-++|++.|+.||.|.-|...+....|||.|.+.++|.+|++.+...
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 367999999999999999999999999999998888889999999999999999887654
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.03 E-value=0.00081 Score=63.96 Aligned_cols=70 Identities=23% Similarity=0.508 Sum_probs=45.3
Q ss_pred CceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCc-----eeCCeEEEEEE
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGR-----QIGGEQLRVDF 167 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~-----~i~Gr~I~V~~ 167 (957)
+.|.|.|+...++.++|++.|+.||.|..|.+.+....|||.|.+.++|+.|++.+... .+.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 45788899999999999999999999999999988889999999999999999876443 45555555543
No 157
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.99 E-value=0.0027 Score=59.47 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=61.0
Q ss_pred CceEEcCCCccCCHHHHHHhhccc--CCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKF--GNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIG----GEQLRV 165 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskf--G~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~----Gr~I~V 165 (957)
.+|+|+|||...|.++|.+++... |...-+.+.-| .|||||-|.+.++|.+..+.++|+.+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988653 56666666544 589999999999999999999999875 467777
Q ss_pred EEccCC
Q 002168 166 DFLRSQ 171 (957)
Q Consensus 166 ~~ak~k 171 (957)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887654
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.87 E-value=0.00086 Score=73.67 Aligned_cols=99 Identities=19% Similarity=0.405 Sum_probs=73.0
Q ss_pred CCEEEEccCCCCCcHHHH------HHHhccCCCeeEEEecCC-------CcEE--EEEeCCHHHHHHHHHHhcCCccccC
Q 002168 20 SSNLWVGNLSADTTDADL------KELFGKFGALDKVTTYSS-------RSFA--FVYFKRVEDAKAAKDALQGSDFRGN 84 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL------~e~FskfG~I~~V~~grs-------kGyA--FVeF~s~edA~~AL~~Lng~~I~Gr 84 (957)
.+-|||-+|++.+..+++ .++|.+||.|..|...+. .+.+ ||.|.+.|||.+|+.+.+|.++.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 456899999999887773 379999999998884331 2334 9999999999999999999999999
Q ss_pred cccccccCC-----------CCCCCceEEcCCC---ccCCHHHHHHhh
Q 002168 85 PIKIEFARP-----------AKPSKHLWVGGIS---QTVSKEELEEGF 118 (957)
Q Consensus 85 ~I~V~~A~p-----------~~~sr~LyVgNLP---~~vTeedL~elF 118 (957)
.|+..|... =....|.|+-.-. ...+++||...=
T Consensus 194 ~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 194 VLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred eEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 999988642 1123455553222 345777776543
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.75 E-value=0.0031 Score=52.60 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=44.9
Q ss_pred CEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHH
Q 002168 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAK 73 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL 73 (957)
+.|-|.|.+.+..+..| ++|..||+|..+.........||+|.+..+|+.||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 57889999877775554 58889999999998888999999999999999986
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.68 E-value=0.0048 Score=51.44 Aligned_cols=52 Identities=27% Similarity=0.437 Sum_probs=44.0
Q ss_pred ceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHH
Q 002168 221 SKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAK 275 (957)
Q Consensus 221 s~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AI 275 (957)
+-|.+.|+++. ..+.+..+|..||+|.++.+.....+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~---~~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD---LAEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch---HHHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 34566777765 55678889999999999999888899999999999999984
No 161
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.34 E-value=0.0049 Score=68.95 Aligned_cols=78 Identities=24% Similarity=0.360 Sum_probs=68.9
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCee--------------EEEecCCCcEEEEEeCCHHHHHHHHHHhcCCc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALD--------------KVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD 80 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~--------------~V~~grskGyAFVeF~s~edA~~AL~~Lng~~ 80 (957)
.+..-..+|||.+||..+++++|.++|.+||.|. +.++.+.|+-|.|.|.+...|++|++..++..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 4456678999999999999999999999999874 22267789999999999999999999999999
Q ss_pred cccCcccccccC
Q 002168 81 FRGNPIKIEFAR 92 (957)
Q Consensus 81 I~Gr~I~V~~A~ 92 (957)
+.|..|+|.++.
T Consensus 141 f~gn~ikvs~a~ 152 (351)
T KOG1995|consen 141 FCGNTIKVSLAE 152 (351)
T ss_pred ccCCCchhhhhh
Confidence 999999998874
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.21 E-value=0.014 Score=55.08 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=52.7
Q ss_pred ceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEE-------------EeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCC-
Q 002168 221 SKILWVGYPPSVQMDEQMLHNAMILFGEIERIK-------------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDP- 286 (957)
Q Consensus 221 s~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~Vk-------------I~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr- 286 (957)
+-|++-|+++. .-..|.+.|++||+|.+.. +....++.-|+|++..+|.+|+. -||..|.|.
T Consensus 7 ~wVtVFGfp~~---~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 7 TWVTVFGFPPS---ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CEEEEE---GG---GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred eEEEEEccCHH---HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 45778888875 6677899999999998775 55677899999999999999986 599999985
Q ss_pred eEEEEeec
Q 002168 287 RITIMFSS 294 (957)
Q Consensus 287 ~I~V~~A~ 294 (957)
.+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 55577763
No 163
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.19 E-value=0.0085 Score=66.11 Aligned_cols=75 Identities=27% Similarity=0.498 Sum_probs=63.3
Q ss_pred CCceEEcCCCccCCHHHH------HHhhcccCCEeEEEEeecC-------C--ceEEEeCCHHHHHHHHHHhCCceeCCe
Q 002168 97 SKHLWVGGISQTVSKEEL------EEGFLKFGNIEDFKFLKDG-------N--TAFVEYSRLEDAAEALKNINGRQIGGE 161 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL------~elFskfG~I~~VkIlrdr-------G--~AFVeF~t~edA~kAIe~LnG~~i~Gr 161 (957)
.+-+||-+|++.+..|++ .++|.+||.|..|.+-+.. + ..||+|.+.|||.+||...+|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 356899999988877763 4799999999999886652 1 259999999999999999999999999
Q ss_pred EEEEEEccCC
Q 002168 162 QLRVDFLRSQ 171 (957)
Q Consensus 162 ~I~V~~ak~k 171 (957)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987654
No 164
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.19 E-value=0.0027 Score=68.11 Aligned_cols=57 Identities=28% Similarity=0.423 Sum_probs=49.1
Q ss_pred HHHHHHHh-hcCCeEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 002168 237 QMLHNAMI-LFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 293 (957)
Q Consensus 237 eeLr~~Fs-~fG~V~~VkI~~-----srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A 293 (957)
++|...|+ +||+|++++|-. -+|-++|.|..+++|++|++.|||+.|.|++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34445555 899999998754 3689999999999999999999999999999999987
No 165
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.18 E-value=0.011 Score=64.49 Aligned_cols=77 Identities=23% Similarity=0.364 Sum_probs=58.5
Q ss_pred CCceEEEecCCCCC-CCC---HHHHHHHHhhcCCeEEEEEeCC-------CcEEEEEeCCHHHHHHHHHHhCCCeeCCCe
Q 002168 219 PPSKILWVGYPPSV-QMD---EQMLHNAMILFGEIERIKSYPS-------RNYSFVEFRSVDEARRAKEGLQGRLFNDPR 287 (957)
Q Consensus 219 ~ps~VL~Vgnpps~-~vt---EeeLr~~Fs~fG~V~~VkI~~s-------rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~ 287 (957)
.+++||+..+.-.. .++ ++++++.+++||.|.+|.|+.. ---.||+|...++|.+|+-.|||+.|+|+.
T Consensus 279 ~ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~ 358 (378)
T KOG1996|consen 279 CPTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRV 358 (378)
T ss_pred cchHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceeccee
Confidence 34555554443221 233 3578899999999999998732 236899999999999999999999999999
Q ss_pred EEEEeecC
Q 002168 288 ITIMFSSS 295 (957)
Q Consensus 288 I~V~~A~~ 295 (957)
+..+|-+.
T Consensus 359 v~A~Fyn~ 366 (378)
T KOG1996|consen 359 VSACFYNL 366 (378)
T ss_pred eeheeccH
Confidence 99888643
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.98 E-value=0.18 Score=57.90 Aligned_cols=64 Identities=23% Similarity=0.356 Sum_probs=51.3
Q ss_pred CCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCC-------------------CcEEEEEeCCHHHHHHHHHH
Q 002168 217 DGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS-------------------RNYSFVEFRSVDEARRAKEG 277 (957)
Q Consensus 217 ~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~s-------------------rG~AFVeF~T~edA~~AIe~ 277 (957)
...++++|++-+++. +-.-+-|.++|..+|.|..|+|.+. +-+|+|+|++.+.|.+|.+.
T Consensus 227 eel~srtivaenLP~-Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 227 EELPSRTIVAENLPL-DHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred cccccceEEEecCCc-chHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 445677777777775 3555889999999999999999631 45899999999999999988
Q ss_pred hCCC
Q 002168 278 LQGR 281 (957)
Q Consensus 278 LNGk 281 (957)
||..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 7543
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.98 E-value=0.0096 Score=63.97 Aligned_cols=96 Identities=28% Similarity=0.403 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCCccccCcccccccCCCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-C----CceEEEeCC
Q 002168 68 DAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-G----NTAFVEYSR 142 (957)
Q Consensus 68 dA~~AL~~Lng~~I~Gr~I~V~~A~p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-r----G~AFVeF~t 142 (957)
-|..|..+|++...+|+.++|.|+. ...|+|.||...++.+.+.+.|+.||.|+...++.| + +.++|+|..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~----~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~ 81 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAM----HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAK 81 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeec----cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhc
Confidence 4667777889999999999999984 278999999999999999999999999987666655 2 459999999
Q ss_pred HHHHHHHHHHhCCce----eCCeEEEEEE
Q 002168 143 LEDAAEALKNINGRQ----IGGEQLRVDF 167 (957)
Q Consensus 143 ~edA~kAIe~LnG~~----i~Gr~I~V~~ 167 (957)
.-.|.+|+..++-.- ..++...|..
T Consensus 82 k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 82 KPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred chhHHHHHHHhccCccccCCCCCccCCCh
Confidence 999999998774432 3455555543
No 168
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.87 E-value=0.017 Score=62.93 Aligned_cols=61 Identities=28% Similarity=0.524 Sum_probs=54.2
Q ss_pred HHHHHHhhcccCCEeEEEEeecCCc-------eEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 111 KEELEEGFLKFGNIEDFKFLKDGNT-------AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 111 eedL~elFskfG~I~~VkIlrdrG~-------AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
++++++.+++||.|..|.|....++ -||+|++.++|.+|+-.|||..|+||.++.-|....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 4578899999999999999877543 899999999999999999999999999998887644
No 169
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.83 E-value=0.019 Score=54.27 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=53.2
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE-------------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccC
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-------------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGN 84 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~-------------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr 84 (957)
...+.|.|-|.|.+ ..+.|.+.|++||.|.+.. .....+.-.|+|.+..+|.+|| ..||..|.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCc
Confidence 34567889999988 5567779999999998774 3456778999999999999999 8899999887
Q ss_pred cc-ccccc
Q 002168 85 PI-KIEFA 91 (957)
Q Consensus 85 ~I-~V~~A 91 (957)
.+ -|.+.
T Consensus 82 ~mvGV~~~ 89 (100)
T PF05172_consen 82 LMVGVKPC 89 (100)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEEc
Confidence 44 35554
No 170
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.80 E-value=0.006 Score=65.43 Aligned_cols=67 Identities=16% Similarity=0.305 Sum_probs=58.0
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEec--------------CCCc----EEEEEeCCHHHHHHHHHHhcCCc
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY--------------SSRS----FAFVYFKRVEDAKAAKDALQGSD 80 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~g--------------rskG----yAFVeF~s~edA~~AL~~Lng~~ 80 (957)
....||+++||+.+...-|+++|+.||.|-+|-.. .++. -|||+|.+...|+.+.+.||++.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 66899999999999999999999999999888721 1111 28899999999999999999999
Q ss_pred cccCc
Q 002168 81 FRGNP 85 (957)
Q Consensus 81 I~Gr~ 85 (957)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99884
No 171
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.46 E-value=0.0084 Score=64.37 Aligned_cols=67 Identities=16% Similarity=0.318 Sum_probs=59.2
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC-----------C-------ceEEEeCCHHHHHHHHHHhCCce
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG-----------N-------TAFVEYSRLEDAAEALKNINGRQ 157 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr-----------G-------~AFVeF~t~edA~kAIe~LnG~~ 157 (957)
....||+++||+.+...-|+++|+.||.|-.|.+-... + .|.|+|.+...|+++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 56789999999999999999999999999999886441 1 29999999999999999999999
Q ss_pred eCCeE
Q 002168 158 IGGEQ 162 (957)
Q Consensus 158 i~Gr~ 162 (957)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98853
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.40 E-value=0.0071 Score=65.02 Aligned_cols=59 Identities=24% Similarity=0.465 Sum_probs=50.3
Q ss_pred HHHHHhhc-ccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 112 EELEEGFL-KFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 112 edL~elFs-kfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
+||...|+ +||.|+.+++-.+ .|.+||.|..+++|++|++.||+..+.|+.|...+...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44555555 8999999987666 47799999999999999999999999999999998653
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.23 E-value=0.017 Score=65.78 Aligned_cols=65 Identities=26% Similarity=0.487 Sum_probs=54.6
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-cC------------------CCcEEEEEeCCHHHHHHHHHH
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-YS------------------SRSFAFVYFKRVEDAKAAKDA 75 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-gr------------------skGyAFVeF~s~edA~~AL~~ 75 (957)
.+.-++++|.+.|||.+-..+.|.++|..+|.|..|++ .. .+-+|+|+|...+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 33468999999999999999999999999999998882 11 245799999999999999976
Q ss_pred hcCC
Q 002168 76 LQGS 79 (957)
Q Consensus 76 Lng~ 79 (957)
++..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 6543
No 174
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.88 E-value=2.4 Score=47.70 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=55.9
Q ss_pred ceEEEecCCCCCCCCHHHHHHHHhhcC--CeEEEEEe------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE-E
Q 002168 221 SKILWVGYPPSVQMDEQMLHNAMILFG--EIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI-M 291 (957)
Q Consensus 221 s~VL~Vgnpps~~vtEeeLr~~Fs~fG--~V~~VkI~------~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V-~ 291 (957)
+-+++|+|+.- -+|+++|.+.+...| .|.+++++ .+||||+|...+....++.++.|-.++|.|..-.| .
T Consensus 80 k~~~YvGNL~W-~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLW-YTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeE-EeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 44677887764 378888888887766 35666665 57899999999999999999999999999965444 4
Q ss_pred ee
Q 002168 292 FS 293 (957)
Q Consensus 292 ~A 293 (957)
|.
T Consensus 159 ~N 160 (498)
T KOG4849|consen 159 YN 160 (498)
T ss_pred cc
Confidence 44
No 175
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.86 E-value=0.055 Score=63.61 Aligned_cols=75 Identities=20% Similarity=0.327 Sum_probs=58.4
Q ss_pred CCceEEEecCCCCCCCC-----HHHHHHHHhhcCCeEEEEEe-----CCCcEEEEEeCCHHHHHHHHHHhCCCeeC-CCe
Q 002168 219 PPSKILWVGYPPSVQMD-----EQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFN-DPR 287 (957)
Q Consensus 219 ~ps~VL~Vgnpps~~vt-----EeeLr~~Fs~fG~V~~VkI~-----~srG~AFVeF~T~edA~~AIe~LNGk~f~-Gr~ 287 (957)
...++++|.+.|-+... ..-|..+|+++|+|..+.+. .++||.|++|.+..+|..|++.|||+.|+ .+.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 44577888877753211 23457889999999998886 35899999999999999999999999986 667
Q ss_pred EEEEee
Q 002168 288 ITIMFS 293 (957)
Q Consensus 288 I~V~~A 293 (957)
+.|..-
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 777543
No 176
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=94.73 E-value=0.027 Score=63.26 Aligned_cols=79 Identities=22% Similarity=0.386 Sum_probs=67.8
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEe--------EEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIE--------DFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIG 159 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~--------~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~ 159 (957)
.....+|||-+|+..+++++|.++|.++|.|. .|+|.++ |+.|.|.|++...|+.||..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34567899999999999999999999999875 3444444 466999999999999999999999999
Q ss_pred CeEEEEEEccCCc
Q 002168 160 GEQLRVDFLRSQP 172 (957)
Q Consensus 160 Gr~I~V~~ak~k~ 172 (957)
+..|+|.++....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999887554
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.64 E-value=0.029 Score=66.19 Aligned_cols=76 Identities=28% Similarity=0.422 Sum_probs=65.6
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhc-cCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCcc---ccCccccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFG-KFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDF---RGNPIKIEFA 91 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~Fs-kfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I---~Gr~I~V~~A 91 (957)
-.+.++.|+|.||-.-.|...|++++. .+|.|.+.++.+-|..|||.|.+.++|.+...+|+|..+ +++.|.+.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 356899999999999999999999998 777777778888899999999999999999999999775 4556666655
No 178
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.44 E-value=0.031 Score=65.98 Aligned_cols=80 Identities=26% Similarity=0.399 Sum_probs=69.4
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcc-cCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCcee---CCeEEEEEEc
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLK-FGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQI---GGEQLRVDFL 168 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFsk-fG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i---~Gr~I~V~~a 168 (957)
+...++.|+|.||-.-.|...|++++.+ .|.|++.+|-+-+.-|||.|.+.++|...+..|||..| +++.|.+.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 3566889999999999999999999984 66888886666678899999999999999999999977 6799999998
Q ss_pred cCCc
Q 002168 169 RSQP 172 (957)
Q Consensus 169 k~k~ 172 (957)
....
T Consensus 520 ~~de 523 (718)
T KOG2416|consen 520 RADE 523 (718)
T ss_pred chhH
Confidence 7554
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.27 E-value=0.12 Score=51.85 Aligned_cols=56 Identities=21% Similarity=0.317 Sum_probs=45.9
Q ss_pred HHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 238 MLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 238 eLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
+|.+.|..||+|.-|++. .+.-+|+|.+-+.|.+|+. |+|..++|+.|+|+..+..
T Consensus 52 ~ll~~~~~~GevvLvRfv--~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV--GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE--TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEe--CCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 677788899999999888 4678999999999999974 8999999999999998654
No 180
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.20 E-value=0.068 Score=53.58 Aligned_cols=76 Identities=26% Similarity=0.429 Sum_probs=53.9
Q ss_pred CCCCCCCEEEEccCCC-----CCcHH----HHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCc
Q 002168 15 KEAPPSSNLWVGNLSA-----DTTDA----DLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNP 85 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~-----svTE~----dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~ 85 (957)
.-.++..||.|.=+.. ..-.+ +|.+.|..||++.-|+.-. +.-+|.|.+.+.|.+|+ .++|..+.|+.
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaal-s~dg~~v~g~~ 98 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAAL-SLDGIQVNGRT 98 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHH-HGCCSEETTEE
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHH-ccCCcEECCEE
Confidence 4467888998876661 22232 6778999999988787433 46799999999999999 99999999999
Q ss_pred ccccccCC
Q 002168 86 IKIEFARP 93 (957)
Q Consensus 86 I~V~~A~p 93 (957)
|+|+...|
T Consensus 99 l~i~LKtp 106 (146)
T PF08952_consen 99 LKIRLKTP 106 (146)
T ss_dssp EEEEE---
T ss_pred EEEEeCCc
Confidence 99988643
No 181
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.30 E-value=0.14 Score=60.42 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=52.9
Q ss_pred CCCCEEEEccCCCCCcH------HHHHHHhccCCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 002168 18 PPSSNLWVGNLSADTTD------ADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDF 81 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE------~dL~e~FskfG~I~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I 81 (957)
.-..+|+|.|+|---.. .-|.++|+++|+|..+. .+..+||.|++|.+..+|+.|++.|||..|
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~l 130 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRL 130 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhccccee
Confidence 56789999999864221 23568999999998776 456899999999999999999999999776
No 182
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.87 E-value=0.21 Score=52.32 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=49.7
Q ss_pred CCHHHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhC--CCeeCCCeEEEEeecC
Q 002168 234 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQ--GRLFNDPRITIMFSSS 295 (957)
Q Consensus 234 vtEeeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LN--Gk~f~Gr~I~V~~A~~ 295 (957)
-..+.|+++|..|+.+..+..+++-+-..|.|.+.++|.+|...|+ +..|.|..++|.|+..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 3568899999999999999999998999999999999999999999 9999999999999943
No 183
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.79 E-value=0.22 Score=58.68 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCccccCcccccccCCCCCCCceEEcCCCccCCHHHHHHhhcc--cCCEeEEEEeecCCceEEEeCCHHHH
Q 002168 69 AKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLK--FGNIEDFKFLKDGNTAFVEYSRLEDA 146 (957)
Q Consensus 69 A~~AL~~Lng~~I~Gr~I~V~~A~p~~~sr~LyVgNLP~~vTeedL~elFsk--fG~I~~VkIlrdrG~AFVeF~t~edA 146 (957)
-.++|++.-+..+..+-.+|... ...|.|.|+-||...-.|+|+.+|+. +-++.+|.+-.+ ...||+|++..||
T Consensus 150 I~Evlresp~VqvDekgekVrp~---~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfesd~DA 225 (684)
T KOG2591|consen 150 IVEVLRESPNVQVDEKGEKVRPN---HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFESDTDA 225 (684)
T ss_pred HHHHHhcCCCceeccCccccccC---cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeecchhH
Confidence 45566666666666666666543 45566778999999999999999986 558888888654 4689999999999
Q ss_pred HHHHHHhCCc--eeCCeEEEEE
Q 002168 147 AEALKNINGR--QIGGEQLRVD 166 (957)
Q Consensus 147 ~kAIe~LnG~--~i~Gr~I~V~ 166 (957)
..|.+.|... .|.|+.|...
T Consensus 226 QqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 226 QQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred HHHHHHHHHHHHhhcCcchhhh
Confidence 9999887543 5667666543
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.59 E-value=0.54 Score=46.94 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=46.9
Q ss_pred HHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 002168 237 QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 294 (957)
Q Consensus 237 eeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~ 294 (957)
..+...++.||.|.+|... ++..|.|.|.+...|++|+.+++. ...|..+++.|-.
T Consensus 105 ~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred HHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 3456677899999999875 577899999999999999999875 6778888888753
No 185
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.33 E-value=0.059 Score=62.34 Aligned_cols=83 Identities=28% Similarity=0.318 Sum_probs=69.8
Q ss_pred CCCEEEEccCCCCC-cHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCCCCC
Q 002168 19 PSSNLWVGNLSADT-TDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPS 97 (957)
Q Consensus 19 ~s~tLfVgNLP~sv-TE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~~~s 97 (957)
..+.|-+...|+.+ |-++|...|.+||+|+.|..+.+--.|.|+|.+..+|-+|. ...+..|+|+.|+|.|.++..
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps~-- 447 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPSP-- 447 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchh-ccccceecCceeEEEEecCCc--
Confidence 45677788888886 56899999999999999998777778999999999998887 778999999999999997655
Q ss_pred CceEEcCCCcc
Q 002168 98 KHLWVGGISQT 108 (957)
Q Consensus 98 r~LyVgNLP~~ 108 (957)
+.|++..
T Consensus 448 ----~tn~pav 454 (526)
T KOG2135|consen 448 ----VTNIPAV 454 (526)
T ss_pred ----ccCcccC
Confidence 5555543
No 186
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.24 E-value=0.78 Score=50.78 Aligned_cols=71 Identities=17% Similarity=0.328 Sum_probs=55.7
Q ss_pred ceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCC-eEEEEeecC
Q 002168 221 SKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDP-RITIMFSSS 295 (957)
Q Consensus 221 s~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr-~I~V~~A~~ 295 (957)
.=|-+.|+++. .-..|..+|++||+|.+........+-.|.|.+.-+|++|+.+ ||+.|+|. -|-|.-+..
T Consensus 198 ~WVTVfGFppg---~~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 198 TWVTVFGFPPG---QVSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred ceEEEeccCcc---chhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 34566678775 5667999999999998877776677999999999999999875 99999875 444544333
No 187
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=91.04 E-value=2.8 Score=46.55 Aligned_cols=165 Identities=16% Similarity=0.276 Sum_probs=103.6
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC-------------CceEEEeCCHHHHHH----HHHHhCCc--e
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG-------------NTAFVEYSRLEDAAE----ALKNINGR--Q 157 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr-------------G~AFVeF~t~edA~k----AIe~LnG~--~ 157 (957)
.|.|.+.|+..+++-..+...|-+||+|++|.++.+. ....+.|-+.+.+-. .++.|... .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999775 358889988876544 33344332 5
Q ss_pred eCCeEEEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHH
Q 002168 158 IGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQ 237 (957)
Q Consensus 158 i~Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEe 237 (957)
+....+.+.|..-+-........ +... . .. ...............++.+.+.+-.. ++++
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~--~~~~---------~----~~---~~~~~L~~~i~~~gATRSl~IeF~~~--~~~~ 154 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPND--EEAD---------F----SD---YLVASLQYNIINRGATRSLAIEFKDP--VDKD 154 (309)
T ss_pred cCCcceeEEEEEEeccccccccc--cccc---------h----hh---HHhhhhhheeecCCcceEEEEEecCc--cchh
Confidence 67778888776532211110000 0000 0 00 00001112233456688888887754 5444
Q ss_pred HH-HHHH---hhcC----CeEEEEEeC--------CCcEEEEEeCCHHHHHHHHHHhCCC
Q 002168 238 ML-HNAM---ILFG----EIERIKSYP--------SRNYSFVEFRSVDEARRAKEGLQGR 281 (957)
Q Consensus 238 eL-r~~F---s~fG----~V~~VkI~~--------srG~AFVeF~T~edA~~AIe~LNGk 281 (957)
++ .+.+ ..-+ .|++|.++. .+.||.+.|-+...|...++-|.-.
T Consensus 155 dl~~~kL~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 155 DLIEKKLPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred HHHHHhhhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 43 3332 1112 267888762 3679999999999999998887633
No 188
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.34 E-value=0.68 Score=42.34 Aligned_cols=56 Identities=16% Similarity=0.332 Sum_probs=41.1
Q ss_pred CceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCC
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNING 155 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG 155 (957)
..||--..|..+...||.++|+.||.|. |..+. ...|||...+.+.|..|+..+..
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~-dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIN-DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCEE-EEEEC-TTEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcEE-EEEEc-CCcEEEEeecHHHHHHHHHHhcc
Confidence 3444444999999999999999999884 44443 45899999999999999988753
No 189
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.24 E-value=0.54 Score=55.57 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=57.2
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhcc--CCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCC--ccccCccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGK--FGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGS--DFRGNPIKIE 89 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~Fsk--fG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~--~I~Gr~I~V~ 89 (957)
....|.|.|+-||.+.-+++|+.+|+. |-++.++...-+.+ =||+|.+.+||..|.+.|... .|-|+.|..+
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 456788999999999999999999985 55667777554444 389999999999999888654 3778876544
No 190
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=90.18 E-value=0.28 Score=54.86 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=58.8
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCC--eeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGA--LDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~--I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
...-++|||||-+-+|++||.+.+...|. +.+++ .+.+||||+|...+....++.++-|-...|+|..-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 34568999999999999999998887663 33444 57789999999999999999998888888888754443
No 191
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.87 E-value=0.78 Score=50.76 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=52.5
Q ss_pred CCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccC
Q 002168 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGN 84 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr 84 (957)
..=|-|-|.|+..+. -|-..|++||+|++..+..+.++-+|.|.+.-+|.+|| ..+|+.|.|.
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KAL-skng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhh-hhcCeeeccc
Confidence 455666677776544 55689999999999998888889999999999999999 7889888765
No 192
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.78 E-value=1.5 Score=38.95 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=42.4
Q ss_pred EEEecCCCCCCCCHHHHHHHHhhcCC-----eEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 002168 223 ILWVGYPPSVQMDEQMLHNAMILFGE-----IERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 293 (957)
Q Consensus 223 VL~Vgnpps~~vtEeeLr~~Fs~fG~-----V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A 293 (957)
.|+++.-....++..+|..++...+. |-+|++. ..|+||+-... .|..+++.|++..+.|++|+|+.|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 35666555557899999999987654 5677777 67899998765 788899999999999999999764
No 193
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.23 E-value=0.85 Score=49.52 Aligned_cols=89 Identities=28% Similarity=0.318 Sum_probs=66.9
Q ss_pred HHHHHHHHhCCceeCCeEEEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEE
Q 002168 145 DAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKIL 224 (957)
Q Consensus 145 dA~kAIe~LnG~~i~Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL 224 (957)
-|..|-.+|++....|+.++|.|+.. ..|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------------------------------------a~l 34 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------------------------------------------AEL 34 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------------------------------------------ceE
Confidence 35666677889999999999998753 223
Q ss_pred EecCCCCCCCCHHHHHHHHhhcCCeEEEEEe-----CCCcEEEEEeCCHHHHHHHHHHhCCCeeCC
Q 002168 225 WVGYPPSVQMDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFND 285 (957)
Q Consensus 225 ~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~-----~srG~AFVeF~T~edA~~AIe~LNGk~f~G 285 (957)
+|.++.. -++.+.|...|+.||.|....+. +..+-++|+|...-.|.+|+..++-.-|.+
T Consensus 35 ~V~nl~~-~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 35 YVVNLMQ-GASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred EEEecch-hhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 4444443 38999999999999999755543 345789999999999999999885544443
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.00 E-value=0.32 Score=50.63 Aligned_cols=68 Identities=18% Similarity=0.219 Sum_probs=45.3
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhcc-CCCe---eEEE--e------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGK-FGAL---DKVT--T------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGN 84 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~Fsk-fG~I---~~V~--~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr 84 (957)
......|.|+.||+++||+++.+.++. ++.- ..+. . ...-..|||.|.+.+++....+.++|..+...
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 456779999999999999999987776 5554 2333 0 11235699999999999999999999776544
No 195
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=88.80 E-value=1.2 Score=38.58 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=43.4
Q ss_pred CceEEcCCCccCCHHHHHHhhccc---CCEeEEEEeecCCceEEEeCCHHHHHHHHHHh
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKF---GNIEDFKFLKDGNTAFVEYSRLEDAAEALKNI 153 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskf---G~I~~VkIlrdrG~AFVeF~t~edA~kAIe~L 153 (957)
..|+|.|+. +++.+||+.+|..| .....|..+.|. .|=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-cEEEEECCHHHHHHHHHcC
Confidence 478999986 48899999999998 134466666654 7889999999999999754
No 196
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.61 E-value=0.91 Score=47.63 Aligned_cols=62 Identities=29% Similarity=0.333 Sum_probs=49.2
Q ss_pred CHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEEccCC
Q 002168 110 SKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNIN--GRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 110 TeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~Ln--G~~i~Gr~I~V~~ak~k 171 (957)
..+.|+++|..|+.+..+.+++.=+...|.|.+.++|.+|...|+ +..+.|..++|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 458899999999999999988887789999999999999999999 99999999999998543
No 197
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.51 E-value=2 Score=39.45 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=42.9
Q ss_pred ceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhC
Q 002168 221 SKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQ 279 (957)
Q Consensus 221 s~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LN 279 (957)
..|+++.+|.+ ....||.++|+.||.|.=-=|- -.-|||...+.+.|..|+..++
T Consensus 9 dHVFhltFPke--WK~~DI~qlFspfG~I~VsWi~--dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLTFPKE--WKTSDIYQLFSPFGQIYVSWIN--DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE--TT----HHHHHHHCCCCCCEEEEEEC--TTEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEeCchH--hhhhhHHHHhccCCcEEEEEEc--CCcEEEEeecHHHHHHHHHHhc
Confidence 56899999886 8889999999999987533332 5689999999999999999886
No 198
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.35 E-value=1.9 Score=37.89 Aligned_cols=55 Identities=11% Similarity=0.227 Sum_probs=47.3
Q ss_pred cCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002168 108 TVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (957)
Q Consensus 108 ~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V 165 (957)
.++-++|+..+++|+ ..+|+.++..-||.|.+.++|+++....+|+.+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467799999999997 4466778888999999999999999999999988877654
No 199
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.26 E-value=1.6 Score=43.68 Aligned_cols=74 Identities=26% Similarity=0.361 Sum_probs=57.4
Q ss_pred CCCCCCEEEEccCCCCCcH----HHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 16 EAPPSSNLWVGNLSADTTD----ADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE----~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
...+..+|.|+=|..++.. ..|...++.||+|.+|. ..++-.|.|.|++..+|-.|+.+... ...|..+++.|-
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT-~cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVT-LCGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceee-ecCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 3678899999887777533 34556788999999997 33566899999999999999977654 556777777775
No 200
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.88 E-value=0.41 Score=55.64 Aligned_cols=62 Identities=26% Similarity=0.314 Sum_probs=53.9
Q ss_pred CHHHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 002168 235 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 297 (957)
Q Consensus 235 tEeeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~ 297 (957)
+-.+|..+|.+||+|..|.+.-..--|.|+|.+..+|-+| ....+-.|+|+.|+|.|.+...
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a-~~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEA-YASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCccccccccCchhhheeeeeccccccch-hccccceecCceeEEEEecCCc
Confidence 5578999999999999999876666799999999999777 4579999999999999997744
No 201
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=86.73 E-value=1.3 Score=46.05 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=50.2
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcc-cCCE---eEEEEeec-C-------CceEEEeCCHHHHHHHHHHhCCceeCC--
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLK-FGNI---EDFKFLKD-G-------NTAFVEYSRLEDAAEALKNINGRQIGG-- 160 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFsk-fG~I---~~VkIlrd-r-------G~AFVeF~t~edA~kAIe~LnG~~i~G-- 160 (957)
....+|.|++||+.+|++++.+.+.. ++.- ..+.-... . ..|||.|.+.+++......++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 44568999999999999999998877 6654 22221122 1 139999999999999999999987732
Q ss_pred ---eEEEEEEccCC
Q 002168 161 ---EQLRVDFLRSQ 171 (957)
Q Consensus 161 ---r~I~V~~ak~k 171 (957)
....|+++--+
T Consensus 85 g~~~~~~VE~Apyq 98 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-EEEEEEEE-SS-
T ss_pred CCCcceeEEEcchh
Confidence 45566666543
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.71 E-value=0.38 Score=54.00 Aligned_cols=73 Identities=22% Similarity=0.420 Sum_probs=59.6
Q ss_pred CCEEEEccCCCCCcHHHHH---HHhccCCCeeEEEecCCC---------cEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 20 SSNLWVGNLSADTTDADLK---ELFGKFGALDKVTTYSSR---------SFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~---e~FskfG~I~~V~~grsk---------GyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
.+-+||-+|+..+..+++. ++|.+||.|..|.+.+.. --+||.|...|||..||...+|.++.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 4678899999887555444 699999999988843321 2389999999999999999999999999988
Q ss_pred ccccC
Q 002168 88 IEFAR 92 (957)
Q Consensus 88 V~~A~ 92 (957)
+.+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 88774
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=85.70 E-value=0.34 Score=54.39 Aligned_cols=75 Identities=21% Similarity=0.405 Sum_probs=60.7
Q ss_pred CCceEEcCCCccCCHHHHH---HhhcccCCEeEEEEeecC-------C--ceEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002168 97 SKHLWVGGISQTVSKEELE---EGFLKFGNIEDFKFLKDG-------N--TAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~---elFskfG~I~~VkIlrdr-------G--~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~ 164 (957)
.+.+||-+|+..+..+++. +.|.+||.|..|.+.++. + .+||+|+..++|..||...+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3568888898877665553 588899999999887754 1 299999999999999999999999999988
Q ss_pred EEEccCC
Q 002168 165 VDFLRSQ 171 (957)
Q Consensus 165 V~~ak~k 171 (957)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7766544
No 204
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=82.79 E-value=4.2 Score=39.21 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=45.8
Q ss_pred eEEcCCCccCCHHHHHHhhcccC-CEeEEEEeecCC----ceEEEeCCHHHHHHHHHHhCCceeCC
Q 002168 100 LWVGGISQTVSKEELEEGFLKFG-NIEDFKFLKDGN----TAFVEYSRLEDAAEALKNINGRQIGG 160 (957)
Q Consensus 100 LyVgNLP~~vTeedL~elFskfG-~I~~VkIlrdrG----~AFVeF~t~edA~kAIe~LnG~~i~G 160 (957)
+.+...|.-++-++|..+.+.+- .|+.++|+++.. .+.++|.+.++|....+.+||+.++.
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444455555566766666654 788999998842 49999999999999999999997753
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=82.66 E-value=0.67 Score=57.19 Aligned_cols=72 Identities=31% Similarity=0.460 Sum_probs=63.1
Q ss_pred EEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCc--cccCcccccccCC
Q 002168 22 NLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD--FRGNPIKIEFARP 93 (957)
Q Consensus 22 tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~--I~Gr~I~V~~A~p 93 (957)
+..+.|.+-..+..-|..+|++||.|.++++-+....|.|+|.+.+.|..|+++|+|.. .-|-+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 44566677778889999999999999999998999999999999999999999999987 4677888888864
No 206
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=82.64 E-value=7.9 Score=37.37 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=53.2
Q ss_pred CCCceEEEecCCCCCCCCHHHHHHHHhhcC-CeEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhCCCeeCC---CeEE
Q 002168 218 GPPSKILWVGYPPSVQMDEQMLHNAMILFG-EIERIKSYPS----RNYSFVEFRSVDEARRAKEGLQGRLFND---PRIT 289 (957)
Q Consensus 218 ~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG-~V~~VkI~~s----rG~AFVeF~T~edA~~AIe~LNGk~f~G---r~I~ 289 (957)
...+.++++..++. -++-++|..+.+.+- .|..++|+++ +-.++++|.+.++|..-.+.+||+.|+. ...+
T Consensus 10 ~~~~~~~~l~vp~~-~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Ch 88 (110)
T PF07576_consen 10 ERRSTLCCLAVPPY-MTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCH 88 (110)
T ss_pred CCCceEEEEEeCcc-cccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeE
Confidence 33456666666665 366666766666554 4778888754 4489999999999999999999999873 3344
Q ss_pred EEee
Q 002168 290 IMFS 293 (957)
Q Consensus 290 V~~A 293 (957)
|-|.
T Consensus 89 vvfV 92 (110)
T PF07576_consen 89 VVFV 92 (110)
T ss_pred EEEE
Confidence 4444
No 207
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=81.44 E-value=5.5 Score=34.59 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=41.2
Q ss_pred CCEEEEccCCCCCcHHHHHHHhccC----CCeeEEEecCCCcEEEEEeCCHHHHHHHHHHh
Q 002168 20 SSNLWVGNLSADTTDADLKELFGKF----GALDKVTTYSSRSFAFVYFKRVEDAKAAKDAL 76 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~e~Fskf----G~I~~V~~grskGyAFVeF~s~edA~~AL~~L 76 (957)
-..|+|+|+. +++-+||+.+|..| +. ..|..- +-..|-|.|.+.+.|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWI-dDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWI-DDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEe-cCCcEEEEECCHHHHHHHHHcC
Confidence 4679999994 68899999999999 43 345521 2234779999999999999653
No 208
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=79.75 E-value=1.3 Score=54.72 Aligned_cols=73 Identities=25% Similarity=0.389 Sum_probs=62.3
Q ss_pred eEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCcee--CCeEEEEEEccCCc
Q 002168 100 LWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQI--GGEQLRVDFLRSQP 172 (957)
Q Consensus 100 LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i--~Gr~I~V~~ak~k~ 172 (957)
.++.|..-..+-.-|..+|.+||.|.+.+.+++-+.|.|+|.+.+.|..|++.++|+.+ -|...+|.+++.-.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 33445555666778899999999999999999999999999999999999999999965 58889999987654
No 209
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=75.70 E-value=3.8 Score=47.84 Aligned_cols=64 Identities=20% Similarity=0.368 Sum_probs=57.4
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccC-CEeEEEEeecC----CceEEEeCCHHHHHHHHHHhCCceeCC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLKDG----NTAFVEYSRLEDAAEALKNINGRQIGG 160 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG-~I~~VkIlrdr----G~AFVeF~t~edA~kAIe~LnG~~i~G 160 (957)
+..|+|-.+|..++-.||..|+..+- .|.+|+|+||. -.+.|+|.+.++|....+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999998765 78999999974 249999999999999999999998763
No 210
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=70.65 E-value=39 Score=37.87 Aligned_cols=141 Identities=15% Similarity=0.213 Sum_probs=93.4
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCC-------------CcEEEEEeCCHHHHHHHHH----Hhc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSS-------------RSFAFVYFKRVEDAKAAKD----ALQ 77 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grs-------------kGyAFVeF~s~edA~~AL~----~Ln 77 (957)
.++=..|.|.+.|+..+++--++...|.+||+|++|..-.+ .....+-|-+.+.+..... +|.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 34556889999999999999999999999999999984333 3678899999998765432 222
Q ss_pred C--CccccCcccccccC-----------------------------CCCCCCceEEcCCCccCCHHHHH----HhhcccC
Q 002168 78 G--SDFRGNPIKIEFAR-----------------------------PAKPSKHLWVGGISQTVSKEELE----EGFLKFG 122 (957)
Q Consensus 78 g--~~I~Gr~I~V~~A~-----------------------------p~~~sr~LyVgNLP~~vTeedL~----elFskfG 122 (957)
. +.++...|.+.+.. .....|+|.|.=- ..+.++++. .++..-+
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~ 168 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSN 168 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCC
Confidence 2 22444555544432 0223456666422 344444432 2333333
Q ss_pred ----CEeEEEEeec--------CCceEEEeCCHHHHHHHHHHhCCc
Q 002168 123 ----NIEDFKFLKD--------GNTAFVEYSRLEDAAEALKNINGR 156 (957)
Q Consensus 123 ----~I~~VkIlrd--------rG~AFVeF~t~edA~kAIe~LnG~ 156 (957)
.+++|.++.. ++||.++|-+...|.+.++.+...
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 4677777644 468999999999999999887643
No 211
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=70.65 E-value=3.4 Score=53.87 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=26.8
Q ss_pred cCCCCCCCCCCCCCccC------CCCCCccCCCcccccccccCCCCCcCCCC
Q 002168 802 SQQGMVYSRPLPNFSIA------PQAAPVAVSPPVHQQYQFAAPSNSQKGYG 847 (957)
Q Consensus 802 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (957)
..+++..+.|++...|| ++++...+.|+-+.|--|..+.+.|+-=|
T Consensus 1994 qa~g~~~~m~p~g~~mp~~qs~q~~~~~~~l~p~~~~q~~ps~~~~~q~m~~ 2045 (2220)
T KOG3598|consen 1994 QAMGNTSSMPPSGPPMPMGQSMQSAGATQQLQPMQKHQMGPSMSGMNQNMGG 2045 (2220)
T ss_pred hccCCCCCcCCCCCCCCcccccccCCCceecCchHhhccCCcccccccchhh
Confidence 34455555555555555 44555666666666666777666666433
No 212
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=69.43 E-value=4.5 Score=42.06 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=59.7
Q ss_pred CCCceEEEecCCCCCCCCH---HHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCC-eEEEEee
Q 002168 218 GPPSKILWVGYPPSVQMDE---QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDP-RITIMFS 293 (957)
Q Consensus 218 ~~ps~VL~Vgnpps~~vtE---eeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr-~I~V~~A 293 (957)
+.++.++.+.....+.++. .....+|..|.+.....++++.+..-|.|.+.+.|..|...+++..|.|+ .++.-|+
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 3445555555544433333 34456777777777777788889999999999999999999999999998 8888888
Q ss_pred cCCC
Q 002168 294 SSEL 297 (957)
Q Consensus 294 ~~~~ 297 (957)
....
T Consensus 88 Q~~~ 91 (193)
T KOG4019|consen 88 QPGH 91 (193)
T ss_pred cCCC
Confidence 6543
No 213
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=69.41 E-value=58 Score=40.67 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=55.8
Q ss_pred eEEEecCCCCCCCCHHHHHHHHhhcCCe-----EEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecC
Q 002168 222 KILWVGYPPSVQMDEQMLHNAMILFGEI-----ERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 295 (957)
Q Consensus 222 ~VL~Vgnpps~~vtEeeLr~~Fs~fG~V-----~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~ 295 (957)
..++++.-....++...|..++..-+.| -.|+|+ ..|.||+.... .|...+..|++..+.|++|.|..++.
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--~~~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--ASHSTIELPKG-MPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--CCceEEEcChh-hHHHHHHHhccccccCCceEEEECCC
Confidence 4577777666678999998888876654 456666 57899998754 57888899999999999999998753
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=69.22 E-value=2.7 Score=51.02 Aligned_cols=72 Identities=25% Similarity=0.304 Sum_probs=63.3
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
+..+..++||+||...+..+-++.+...+|-|-+++... |||++|..+.-+.+|+..++...++|..+.+.-
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 345678999999999999999999999999988877655 999999999999999999998888888877763
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=67.84 E-value=3.8 Score=38.02 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=42.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCC-ccccCcccccccC------------CCCCCCceEEcCCCccCCHHHHHHhhc
Q 002168 59 AFVYFKRVEDAKAAKDALQGS-DFRGNPIKIEFAR------------PAKPSKHLWVGGISQTVSKEELEEGFL 119 (957)
Q Consensus 59 AFVeF~s~edA~~AL~~Lng~-~I~Gr~I~V~~A~------------p~~~sr~LyVgNLP~~vTeedL~elFs 119 (957)
|.|+|.+.+-|..-++.-.-. .+.+..+.|.... ..-..++|.|.|||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999988432221 2444444443321 134578999999999999999988764
No 216
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=66.71 E-value=15 Score=32.61 Aligned_cols=59 Identities=24% Similarity=0.434 Sum_probs=35.3
Q ss_pred ccCCHHHHHHhhcccC-----CEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 107 QTVSKEELEEGFLKFG-----NIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 107 ~~vTeedL~elFskfG-----~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
..++..+|..++...+ .|-.|.+.. .++||+-.. +.|..+++.|++..+.|+.+.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3578889988887764 344666644 489998755 4788999999999999999999854
No 217
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=60.44 E-value=32 Score=30.25 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 002168 233 QMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI 290 (957)
Q Consensus 233 ~vtEeeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V 290 (957)
.++-++++..+..|+ ..+|... +.--||.|.+.++|++..+..+|+.+.+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d--~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDD--RTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEec--CCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999995 5566544 434579999999999999999999998877654
No 218
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=58.87 E-value=6.4 Score=48.22 Aligned_cols=56 Identities=29% Similarity=0.638 Sum_probs=36.9
Q ss_pred eEEEEcCCCc--hhhHhHHHHHHHhhccccceeeeecCCceEEEeCCChhhhceeeeCCCccEEEEEeecc
Q 002168 565 DIVFFLPDSE--DDFASYTEFLRYLGSKNRAGVAKFDDGTTLFLVPPSDFLSKVLKVVGPERLYGVVLKLP 633 (957)
Q Consensus 565 ~vvff~p~s~--~D~~~y~ef~~YL~~K~Ra~v~k~~~~~tlflvPPsdf~~~vlkv~g~~~~~gvvl~~~ 633 (957)
.|-.|=|-=+ .||.+|-++|.=+|.| |||+||+ |||.+|.++.-+= .|--|++..|
T Consensus 14 ~I~tF~PtmeEF~dF~~yi~~IEs~G~h-~aGlaKV--------ipPkeWk~r~~~~----di~di~I~~P 71 (690)
T KOG0958|consen 14 GIPTFYPTMEEFADFSAYIAYIESQGAH-RAGLAKV--------IPPKEWKPRLMYD----DIDDIKIPAP 71 (690)
T ss_pred CcceeCcCHHHHHhHHHHHHHHHhccch-hcCeeee--------eCCccCCcccccC----chhheecChh
Confidence 3445555433 3666666666667777 9999998 9999998765432 3444444444
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.86 E-value=36 Score=41.27 Aligned_cols=49 Identities=24% Similarity=0.489 Sum_probs=36.9
Q ss_pred HHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeC--CCeEEEEee
Q 002168 240 HNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFN--DPRITIMFS 293 (957)
Q Consensus 240 r~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~--Gr~I~V~~A 293 (957)
+.-+..|+ +.+.+.. ||.|+|++++.|.+..+.++|.+|. +..|-++|.
T Consensus 255 ~~kLR~Yq-~~rLkYY----yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 255 REKLRQYQ-LNRLKYY----YAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHH-hhhheeE----EEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 44444553 4444433 8999999999999999999999997 567777776
No 220
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=58.18 E-value=22 Score=41.77 Aligned_cols=67 Identities=21% Similarity=0.313 Sum_probs=53.4
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCC-CeeEEE---ecC-CCcEEEEEeCCHHHHHHHHHHhcCCcccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFG-ALDKVT---TYS-SRSFAFVYFKRVEDAKAAKDALQGSDFRG 83 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG-~I~~V~---~gr-skGyAFVeF~s~edA~~AL~~Lng~~I~G 83 (957)
+.+++.|.|-.+|..+|-.||..|...+- .|.+|+ .+. ++-.+.|+|++.++|....+..||..|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 44599999999999999999999987653 344555 222 44568999999999999999999987643
No 221
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=56.67 E-value=8.2 Score=47.11 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=62.0
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
...+.-+|||+|+-..+..+-++.+...||-|-+.+..+ |+|..|.....+..|+..++...+.|..+.+..
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 356789999999999999999999999999887666333 999999999999999988888888888776654
No 222
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.23 E-value=36 Score=41.24 Aligned_cols=68 Identities=28% Similarity=0.357 Sum_probs=54.2
Q ss_pred CCCCCEEEEccCCCC-CcHHHHHHHhccC----CCeeEEEe----------------cC---------------------
Q 002168 17 APPSSNLWVGNLSAD-TTDADLKELFGKF----GALDKVTT----------------YS--------------------- 54 (957)
Q Consensus 17 ~~~s~tLfVgNLP~s-vTE~dL~e~Fskf----G~I~~V~~----------------gr--------------------- 54 (957)
...+++|-|.||.++ +...||.-+|+.| |.|.+|.+ |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 467899999999998 7788999888866 46777771 11
Q ss_pred ----------------CCcEEEEEeCCHHHHHHHHHHhcCCccccC
Q 002168 55 ----------------SRSFAFVYFKRVEDAKAAKDALQGSDFRGN 84 (957)
Q Consensus 55 ----------------skGyAFVeF~s~edA~~AL~~Lng~~I~Gr 84 (957)
.--||.|+|.+.+.|.+..+.++|..+...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 013799999999999999999999887443
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=51.42 E-value=24 Score=39.08 Aligned_cols=46 Identities=9% Similarity=0.169 Sum_probs=37.8
Q ss_pred CceEEcCCCccCCHHHHHHhhcccC-CEeEEEEeecCCceEEEeCCH
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLKDGNTAFVEYSRL 143 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG-~I~~VkIlrdrG~AFVeF~t~ 143 (957)
.-|+|+||+.++.-.||+..+.+-| .-.++.+.-..+.||++|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 3599999999999999999999887 345666655678899999665
No 224
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=50.26 E-value=18 Score=35.78 Aligned_cols=108 Identities=16% Similarity=0.091 Sum_probs=70.9
Q ss_pred EEEEccCC--CCCcHHHHHHHhcc----CCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCCC
Q 002168 22 NLWVGNLS--ADTTDADLKELFGK----FGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAK 95 (957)
Q Consensus 22 tLfVgNLP--~svTE~dL~e~Fsk----fG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~~ 95 (957)
...|+.+- ...+-..|...+.+ .|.+.-... ..++..+.|.+.+|+.+++ ......+.|..+.+..-++..
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl-~~~p~~~~~~~~~l~~W~~~~ 93 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVL-KGGPWNFNGHFLILQRWSPDF 93 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEE-ecccccccccchhhhhhcccc
Confidence 34444442 23455556655543 343332223 5689999999999999999 445556777777776655322
Q ss_pred C---------CCceEEcCCCcc-CCHHHHHHhhcccCCEeEEEEeec
Q 002168 96 P---------SKHLWVGGISQT-VSKEELEEGFLKFGNIEDFKFLKD 132 (957)
Q Consensus 96 ~---------sr~LyVgNLP~~-vTeedL~elFskfG~I~~VkIlrd 132 (957)
. ..-|.|.|||.. .+++-|+.+.+.+|.+.++.....
T Consensus 94 ~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 94 NPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred cccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 1 123556799977 677889999999999988876533
No 225
>PHA01365 hypothetical protein
Probab=48.64 E-value=6.6 Score=35.42 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=49.5
Q ss_pred ccChhHHHHHhhhccCceEEEEcCCCchhhHhHHHHHHHhhccccceeeeec-------------CCceEEEeCCChhhh
Q 002168 548 RTGLDMLAKHYAEAIGFDIVFFLPDSEDDFASYTEFLRYLGSKNRAGVAKFD-------------DGTTLFLVPPSDFLS 614 (957)
Q Consensus 548 Rt~ld~l~kh~~~a~~~~vvff~p~s~~D~~~y~ef~~YL~~K~Ra~v~k~~-------------~~~tlflvPPsdf~~ 614 (957)
|-+.+.+---|.+.++.+++||+|..++=-++|--|.+ .+|-..|++=.| +.+.+||-|--||+-
T Consensus 5 ~e~ikrilqK~fkdskieki~~lps~~dv~~KYiif~r--~s~~y~G~~vvdGiqIPFiAev~lngk~~iYLyP~KDFYL 82 (91)
T PHA01365 5 KNGIKKLLQKCFKDSSIDVIFMSCNNLSPHKKYMIIDP--ESKYYIGYILTDGIKIPFIAEVWHNNTTRIYLDPRKDFYL 82 (91)
T ss_pred HHHHHHHHHHHhCCCceEEEEEecCCCCccccEEEEEE--ecceEEEEEEEcceeccEEeeeeeCCeEEEEEccccceeH
Confidence 34556666666788999999999988887788776654 466677777654 367899999999974
Q ss_pred c
Q 002168 615 K 615 (957)
Q Consensus 615 ~ 615 (957)
-
T Consensus 83 a 83 (91)
T PHA01365 83 A 83 (91)
T ss_pred H
Confidence 3
No 226
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=44.29 E-value=1.3e+02 Score=38.18 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHhccCCCeeEEE
Q 002168 30 ADTTDADLKELFGKFGALDKVT 51 (957)
Q Consensus 30 ~svTE~dL~e~FskfG~I~~V~ 51 (957)
.+++++++-+.|...|+=..|.
T Consensus 81 ~~ls~~e~~~~F~~~~~dmni~ 102 (1102)
T KOG1924|consen 81 FSLSSNEVLELFELMGEDMNIN 102 (1102)
T ss_pred hhccHHHHHHHHHHHhhhcccc
Confidence 3456666667776666433333
No 227
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=44.05 E-value=36 Score=37.60 Aligned_cols=125 Identities=22% Similarity=0.385 Sum_probs=74.7
Q ss_pred CCcHHHHHHHhccCCCee-----EEEecCCCcEEEEEeCCHHH----HHHHHHHhcCCccc--cC--ccccccc------
Q 002168 31 DTTDADLKELFGKFGALD-----KVTTYSSRSFAFVYFKRVED----AKAAKDALQGSDFR--GN--PIKIEFA------ 91 (957)
Q Consensus 31 svTE~dL~e~FskfG~I~-----~V~~grskGyAFVeF~s~ed----A~~AL~~Lng~~I~--Gr--~I~V~~A------ 91 (957)
+++.=||++-+... |+ ++++.. ...-||.|.-.-. .+..+..|+|..|+ |. .++|.-+
T Consensus 48 sisnwdlmerlk~a--id~~q~dsckire-snid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidf 124 (445)
T KOG2891|consen 48 SISNWDLMERLKGA--IDNHQFDSCKIRE-SNIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDF 124 (445)
T ss_pred ccchHHHHHHHHhh--cccccccceeecc-cccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCC
Confidence 45666677666533 33 333322 3456888865433 45566677876653 22 2333221
Q ss_pred -C------------------CCCCCCceEEcCCCcc------------CCHHHHHHhhcccCCEeEEEEee-c-------
Q 002168 92 -R------------------PAKPSKHLWVGGISQT------------VSKEELEEGFLKFGNIEDFKFLK-D------- 132 (957)
Q Consensus 92 -~------------------p~~~sr~LyVgNLP~~------------vTeedL~elFskfG~I~~VkIlr-d------- 132 (957)
. |.....+|++.+||-. -+++-|+..|+.||.|..|.|.- |
T Consensus 125 psrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn 204 (445)
T KOG2891|consen 125 PSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMN 204 (445)
T ss_pred CcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhc
Confidence 1 2333457888888721 35678999999999999887752 1
Q ss_pred --------CCc---------eEEEeCCHHHHHHHHHHhCCcee
Q 002168 133 --------GNT---------AFVEYSRLEDAAEALKNINGRQI 158 (957)
Q Consensus 133 --------rG~---------AFVeF~t~edA~kAIe~LnG~~i 158 (957)
.|+ |||.|....--..|+..|.|..+
T Consensus 205 ~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 205 GKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred CccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 121 77777766666777777776543
No 228
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=33.96 E-value=40 Score=27.07 Aligned_cols=28 Identities=29% Similarity=0.511 Sum_probs=18.4
Q ss_pred hhHhHHHHHHHhhccccceeeeecCCceEEEeCCChhh
Q 002168 576 DFASYTEFLRYLGSKNRAGVAKFDDGTTLFLVPPSDFL 613 (957)
Q Consensus 576 D~~~y~ef~~YL~~K~Ra~v~k~~~~~tlflvPPsdf~ 613 (957)
|+..|-+-++-+ -.+.|+||+ |||.+|.
T Consensus 14 Dp~~yi~~i~~~--~~~yGi~KI--------vPP~~w~ 41 (42)
T smart00545 14 DPLAYISKIRPQ--AEKYGICKV--------VPPKSWK 41 (42)
T ss_pred CHHHHHHHHHHH--HhhCCEEEE--------ECCCCCC
Confidence 455555555444 345799998 9999873
No 229
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=32.44 E-value=3.8e+02 Score=32.47 Aligned_cols=15 Identities=13% Similarity=0.468 Sum_probs=9.0
Q ss_pred CCcccccCCCccccc
Q 002168 663 EHVLPVDYNRFSHDD 677 (957)
Q Consensus 663 ~~~~~~~~~~~~~~~ 677 (957)
++-++|++-++..|=
T Consensus 305 ~q~~~~~~~~~d~ey 319 (554)
T KOG0119|consen 305 DQQMPMSSANFDREY 319 (554)
T ss_pred ccccchhhhccCHHH
Confidence 455566666666663
No 230
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=31.39 E-value=1.1e+02 Score=28.35 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=40.0
Q ss_pred eEEcCCCccCCHHHHHHhhcc-cC-CEeEEEEeecC---CceEEEeCCHHHHHHHHHH
Q 002168 100 LWVGGISQTVSKEELEEGFLK-FG-NIEDFKFLKDG---NTAFVEYSRLEDAAEALKN 152 (957)
Q Consensus 100 LyVgNLP~~vTeedL~elFsk-fG-~I~~VkIlrdr---G~AFVeF~t~edA~kAIe~ 152 (957)
-|.--....+++.+|++.++. || .|.+|..+... .-|||.+...++|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 344445668999999999987 77 78887766553 3499999999988887543
No 231
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=30.57 E-value=94 Score=33.64 Aligned_cols=61 Identities=33% Similarity=0.467 Sum_probs=49.7
Q ss_pred ChhHHHHHhhhc-cCceEEEEcCCCchhhHhHHHHHHHhhccccceeeeecCCceEEEeCCChhhhceeee
Q 002168 550 GLDMLAKHYAEA-IGFDIVFFLPDSEDDFASYTEFLRYLGSKNRAGVAKFDDGTTLFLVPPSDFLSKVLKV 619 (957)
Q Consensus 550 ~ld~l~kh~~~a-~~~~vvff~p~s~~D~~~y~ef~~YL~~K~Ra~v~k~~~~~tlflvPPsdf~~~vlkv 619 (957)
.|-.|+|-.-+- ...+||+|.-.-+. -.+.++|++.|-.| .++..|.-|||...|+++|.+
T Consensus 124 eLv~~akrlkk~~Vaidii~FGE~~~~-~e~l~~fida~N~~--------~~gshlv~Vppg~~L~d~l~s 185 (259)
T KOG2884|consen 124 ELVKLAKRLKKNKVAIDIINFGEAENN-TEKLFEFIDALNGK--------GDGSHLVSVPPGPLLSDALLS 185 (259)
T ss_pred HHHHHHHHHHhcCeeEEEEEecccccc-HHHHHHHHHHhcCC--------CCCceEEEeCCCccHHHHhhc
Confidence 577777777655 68999999865444 78999999999876 389999999999988888765
No 232
>PF13546 DDE_5: DDE superfamily endonuclease
Probab=28.40 E-value=1.3e+02 Score=33.10 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=82.5
Q ss_pred CCCceEEeeee--cCCcceeeeEEeeccCCccc------cCC--ce------------eccccccChhHHHHHhhhccCc
Q 002168 507 DSDFIWRGIIA--KGGTPVCRARCVPFGKGIES------ELP--EV------------VNCSARTGLDMLAKHYAEAIGF 564 (957)
Q Consensus 507 ~~~~~w~g~ia--KgG~pvC~~~c~~v~~~~~~------~lP--~~------------ldctaRt~ld~l~kh~~~a~~~ 564 (957)
.-++.|.|..- |.|..++-+.|..+...... .+| -. -+...+|-+++......++...
T Consensus 103 gv~r~~~~~~g~~k~~~~~~~v~l~~~~~~~~~~l~~~L~~p~~w~~~~~~~~~~~~~~~~~~~tk~~la~~~i~~a~~~ 182 (273)
T PF13546_consen 103 GVGRQYDHSAGRGKSGNCQVGVHLSYVDGGGSCPLDFRLYLPKSWTEDKERRNRAGIPEEQEFRTKPELALEMIDRARQA 182 (273)
T ss_pred cccccccCccccccccccceEEEEEeccCCcccchhhhhhccccccchhhhhhccccccccccccHHHHHHHHHHHHHhc
Confidence 34678888888 99999999998888764422 334 01 1234567777777777666543
Q ss_pred eE--EEEcCCCchhhHhHHHHHHHhhccccceeeeecCCceEEEeCCChhhhceeeeCCCccEEEEEe
Q 002168 565 DI--VFFLPDSEDDFASYTEFLRYLGSKNRAGVAKFDDGTTLFLVPPSDFLSKVLKVVGPERLYGVVL 630 (957)
Q Consensus 565 ~v--vff~p~s~~D~~~y~ef~~YL~~K~Ra~v~k~~~~~tlflvPPsdf~~~vlkv~g~~~~~gvvl 630 (957)
.+ =.++-| +-+..-.+|+.-|.+..---|+.+..++.+|+-||..--.+ .|.-+.||-.+
T Consensus 183 g~~~~~vvaD--s~y~~~~~f~~~l~~~~~~~i~~vr~n~~~~~~~~~~~~~~----rGRPr~~g~~~ 244 (273)
T PF13546_consen 183 GIPARWVVAD--SWYGSSPAFRKALRERGLHYIGRVRSNRKVYYPPPPPPPPK----RGRPRKYGRRI 244 (273)
T ss_pred ccccceEEec--cccCChHHHHHHHHHCCceEEEeeccCCEEEcCCccccCCC----CCCCCCCCCcC
Confidence 22 114444 44556779999999988889999999999999998554443 78888888663
No 233
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=28.26 E-value=1.4e+02 Score=27.20 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=39.7
Q ss_pred eEEcCCCccCCHHHHHHhhcc-cC-CEeEEEEeecC---CceEEEeCCHHHHHHHHHH
Q 002168 100 LWVGGISQTVSKEELEEGFLK-FG-NIEDFKFLKDG---NTAFVEYSRLEDAAEALKN 152 (957)
Q Consensus 100 LyVgNLP~~vTeedL~elFsk-fG-~I~~VkIlrdr---G~AFVeF~t~edA~kAIe~ 152 (957)
-|+-.++..+++.+|++.++. || .|.+|..+.-+ .-|||.+...++|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 444556678999999999987 77 77777766543 2499999988888876543
No 234
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=27.65 E-value=1.2e+02 Score=33.84 Aligned_cols=51 Identities=24% Similarity=0.190 Sum_probs=42.0
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCe-eEEEecCCCcEEEEEeCCH
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGAL-DKVTTYSSRSFAFVYFKRV 66 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I-~~V~~grskGyAFVeF~s~ 66 (957)
++....-|+|+||+.++.-.||+..+.+.+.+ .+|......|.||+.|.+.
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 34456679999999999999999999988754 4666677889999999874
No 235
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=27.04 E-value=1.1e+02 Score=33.77 Aligned_cols=34 Identities=18% Similarity=0.499 Sum_probs=30.6
Q ss_pred eEEEEcCCC--chhhHhHHHHHHHhhccccceeeee
Q 002168 565 DIVFFLPDS--EDDFASYTEFLRYLGSKNRAGVAKF 598 (957)
Q Consensus 565 ~vvff~p~s--~~D~~~y~ef~~YL~~K~Ra~v~k~ 598 (957)
...|++|+. ..+...|.-+++-|.+++++|||++
T Consensus 110 ~s~~l~P~~~~~~s~~af~aL~~am~~~~kvai~r~ 145 (272)
T cd00594 110 ESYYLVPDDSDKGSEKAFSALRRALLEKDKVAIARY 145 (272)
T ss_pred CcEEEEcCCCCcccHHHHHHHHHHHHHcCcEEEEEE
Confidence 456778888 5889999999999999999999997
No 236
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=26.62 E-value=42 Score=35.23 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=55.3
Q ss_pred ceEEcCCCccC-----CHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCe-EEEEEEccCC
Q 002168 99 HLWVGGISQTV-----SKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGE-QLRVDFLRSQ 171 (957)
Q Consensus 99 ~LyVgNLP~~v-----TeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr-~I~V~~ak~k 171 (957)
.+.+.+|...+ .+...+++|..|.+.....+++..+..-|-|.+.+.|..|...+++..|.|. .++.-++...
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 34445554333 3445677888888777777777777888999999999999999999999987 7777776543
No 237
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=25.32 E-value=93 Score=29.02 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=22.6
Q ss_pred eEEEeCCHHHHHHHHHHhC-CceeCCeEEEEEE
Q 002168 136 AFVEYSRLEDAAEALKNIN-GRQIGGEQLRVDF 167 (957)
Q Consensus 136 AFVeF~t~edA~kAIe~Ln-G~~i~Gr~I~V~~ 167 (957)
|.|+|.+.+-|.+.++.-. ...++++.+.|.-
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 6899999999999986421 1255676666653
No 238
>TIGR02772 Ku_bact Ku protein, prokaryotic. Members of this protein family are Ku proteins of non-homologous end joining (NHEJ) DNA repair in bacteria and in at least one member of the archaea (Archaeoglobus fulgidus). Most members are encoded by a gene adjacent to the gene for the DNA ligase that completes the repair. The NHEJ system is broadly but rather sparsely distributed, being present in about one fifth of the first 250 completed prokarytotic genomes. A few species (e.g. Archaeoglobus fulgidus and Bradyrhizobium japonicum) have multiple copies that appear to represent recent paralogous family expansion.
Probab=21.61 E-value=2.3e+02 Score=31.52 Aligned_cols=52 Identities=19% Similarity=0.329 Sum_probs=37.7
Q ss_pred HHHHhhhccCceEEEEcCCCchhhHhHHHHHHHhhccccceeeeec--CCceEEEeCCC
Q 002168 554 LAKHYAEAIGFDIVFFLPDSEDDFASYTEFLRYLGSKNRAGVAKFD--DGTTLFLVPPS 610 (957)
Q Consensus 554 l~kh~~~a~~~~vvff~p~s~~D~~~y~ef~~YL~~K~Ra~v~k~~--~~~tlflvPPs 610 (957)
+--||++.+ .|+.|+ +.-...|.-+++=|.+++++|||++- .+..|.++=|+
T Consensus 101 i~~~y~~~s----yyl~P~-~~~~~a~~~L~~Al~~~~kvaIar~v~r~r~~l~aL~P~ 154 (258)
T TIGR02772 101 IDPIYFDTP----YYLAPD-KGGEKAYALLREALEDTGKVGIAKVVLRGRERLAALRPV 154 (258)
T ss_pred CChheeCCC----EEEccC-CCchHHHHHHHHHHHHcCCEEEEEEEEcCCcEEEEEEEC
Confidence 334566433 788898 56678999999999999999999973 33345555444
No 239
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.91 E-value=3.9e+02 Score=23.46 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=38.2
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCCC-CCCceEEcCCCccCCHHHHHHhhcccC-CEeEE
Q 002168 57 SFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAK-PSKHLWVGGISQTVSKEELEEGFLKFG-NIEDF 127 (957)
Q Consensus 57 GyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~~-~sr~LyVgNLP~~vTeedL~elFskfG-~I~~V 127 (957)
.+.+|.|.+..+|.+|-+.|+..-+..+ +....+.- ..|-+-|.= + .-+.+.+.+++++.| .++.+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~---liP~P~~i~~~CG~al~~-~-~~d~~~i~~~l~~~~i~~~~i 69 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR---LIPTPREISAGCGLALRF-E-PEDLEKIKEILEENGIEYEGI 69 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE---EeCCChhccCCCCEEEEE-C-hhhHHHHHHHHHHCCCCeeEE
Confidence 4789999999999999988776544333 33322221 223222221 1 245567777777776 34433
No 240
>cd00788 KU70 Ku-core domain, Ku70 subfamily; Ku70 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in the nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=20.77 E-value=1.5e+02 Score=33.08 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=28.8
Q ss_pred EEEEcCCCc---hhhHhHHHHHHHhhccccceeeee
Q 002168 566 IVFFLPDSE---DDFASYTEFLRYLGSKNRAGVAKF 598 (957)
Q Consensus 566 vvff~p~s~---~D~~~y~ef~~YL~~K~Ra~v~k~ 598 (957)
-.|++|+.+ .....|.-|++-|.+++++|||++
T Consensus 117 s~fl~P~~~~~~gs~~af~aL~~am~~~~kvaIa~~ 152 (287)
T cd00788 117 SYFIYPDESDYKGSTRLFAALLRSCLKKNKVAICWY 152 (287)
T ss_pred ceeEecCcccccCcHHHHHHHHHHHHhcCcEEEEEE
Confidence 457788873 578899999999999999999998
No 241
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.53 E-value=1.3e+02 Score=35.26 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=44.9
Q ss_pred CCEEEEccCCCCCcHHHHHHHhccCCCee-EEEecCCCcEEEEEeCCHHHHHHHHHHh
Q 002168 20 SSNLWVGNLSADTTDADLKELFGKFGALD-KVTTYSSRSFAFVYFKRVEDAKAAKDAL 76 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~e~FskfG~I~-~V~~grskGyAFVeF~s~edA~~AL~~L 76 (957)
-..|-|.++|....-+||-..|..|+.-. +|+ .-..-.||-.|.+...|..|| .|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIk-WvDdthalaVFss~~~AaeaL-t~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIK-WVDDTHALAVFSSVNRAAEAL-TL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeE-EeecceeEEeecchHHHHHHh-hc
Confidence 46788999999999999999999998654 333 335668999999999999999 44
Done!