Query 002168
Match_columns 957
No_of_seqs 306 out of 2088
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 3.5E-38 1.2E-42 341.3 28.1 235 17-297 19-265 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 3.4E-37 1.2E-41 334.9 25.1 238 15-296 36-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 4.4E-28 1.5E-32 252.8 17.2 157 17-173 12-183 (213)
4 3md3_A Nuclear and cytoplasmic 99.9 2.2E-27 7.6E-32 234.0 17.0 149 21-169 1-165 (166)
5 1b7f_A Protein (SXL-lethal pro 99.9 4.3E-27 1.5E-31 233.1 17.7 150 19-168 2-168 (168)
6 2g4b_A Splicing factor U2AF 65 99.9 4E-27 1.4E-31 234.6 16.4 151 18-169 2-172 (172)
7 2qfj_A FBP-interacting repress 99.9 1.1E-26 3.8E-31 239.8 19.6 155 18-172 26-206 (216)
8 1fxl_A Paraneoplastic encephal 99.9 6.5E-27 2.2E-31 230.9 17.0 150 19-168 1-167 (167)
9 3pgw_A U1-A; protein-RNA compl 99.9 1.4E-26 4.8E-31 250.1 19.9 155 15-169 4-281 (282)
10 2yh0_A Splicing factor U2AF 65 99.9 5.7E-27 1.9E-31 238.7 15.8 154 18-172 2-195 (198)
11 1l3k_A Heterogeneous nuclear r 99.9 1.3E-26 4.5E-31 235.6 16.6 160 13-174 6-186 (196)
12 3nmr_A Cugbp ELAV-like family 99.9 3.7E-26 1.3E-30 227.5 16.0 150 19-168 2-174 (175)
13 2adc_A Polypyrimidine tract-bi 99.9 8.4E-26 2.9E-30 238.1 19.1 155 17-171 31-228 (229)
14 4f02_A Polyadenylate-binding p 99.9 7.8E-26 2.7E-30 235.7 17.5 163 91-296 9-181 (213)
15 2cjk_A Nuclear polyadenylated 99.9 2E-26 7E-31 228.3 11.4 151 18-171 1-166 (167)
16 3md3_A Nuclear and cytoplasmic 99.9 2.8E-25 9.7E-30 218.9 19.3 154 98-294 1-165 (166)
17 1qm9_A Polypyrimidine tract-bi 99.9 8.3E-26 2.8E-30 231.3 15.6 153 19-171 2-197 (198)
18 1fje_B Nucleolin RBD12, protei 99.9 1.1E-25 3.8E-30 225.3 15.6 155 15-171 8-174 (175)
19 1b7f_A Protein (SXL-lethal pro 99.9 5.1E-25 1.7E-29 218.2 19.9 153 96-293 2-168 (168)
20 1fxl_A Paraneoplastic encephal 99.9 5.3E-25 1.8E-29 217.2 19.2 152 97-293 2-167 (167)
21 2adc_A Polypyrimidine tract-bi 99.9 8.1E-25 2.8E-29 230.5 21.7 193 94-296 31-228 (229)
22 3tyt_A Heterogeneous nuclear r 99.9 1.6E-25 5.5E-30 233.3 15.9 151 18-168 2-204 (205)
23 1qm9_A Polypyrimidine tract-bi 99.9 6.7E-25 2.3E-29 224.6 19.0 190 97-296 3-197 (198)
24 3sde_A Paraspeckle component 1 99.9 3.7E-25 1.3E-29 237.8 17.8 157 13-172 15-180 (261)
25 3pgw_A U1-A; protein-RNA compl 99.9 2.9E-24 1E-28 231.9 24.9 200 94-294 6-281 (282)
26 2g4b_A Splicing factor U2AF 65 99.9 8.2E-25 2.8E-29 217.8 17.0 153 96-294 3-172 (172)
27 2qfj_A FBP-interacting repress 99.9 2.8E-25 9.5E-30 229.3 13.8 170 96-299 27-208 (216)
28 2yh0_A Splicing factor U2AF 65 99.9 2.5E-24 8.5E-29 219.2 20.6 176 96-297 3-195 (198)
29 3smz_A Protein raver-1, ribonu 99.9 9.3E-25 3.2E-29 236.1 16.8 157 18-174 93-267 (284)
30 3tyt_A Heterogeneous nuclear r 99.9 6.8E-24 2.3E-28 221.0 20.9 190 96-293 3-204 (205)
31 1l3k_A Heterogeneous nuclear r 99.9 3.3E-24 1.1E-28 217.9 17.6 165 94-299 10-186 (196)
32 3nmr_A Cugbp ELAV-like family 99.9 5.5E-24 1.9E-28 211.8 17.4 155 96-294 2-175 (175)
33 2ghp_A U4/U6 snRNA-associated 99.9 5.8E-24 2E-28 230.7 16.4 153 18-171 115-291 (292)
34 2cjk_A Nuclear polyadenylated 99.9 3.9E-24 1.3E-28 211.9 11.9 153 96-296 2-166 (167)
35 1fje_B Nucleolin RBD12, protei 99.9 3.6E-23 1.2E-27 207.0 16.7 160 93-296 9-174 (175)
36 3sde_A Paraspeckle component 1 99.9 3E-22 1E-26 215.1 19.1 151 95-296 20-179 (261)
37 2i2y_A Fusion protein consists 99.7 6.7E-18 2.3E-22 166.4 9.1 119 53-172 10-149 (150)
38 4f25_A Polyadenylate-binding p 99.7 1.1E-17 3.9E-22 158.0 7.9 95 19-113 4-113 (115)
39 2kn4_A Immunoglobulin G-bindin 99.7 3.1E-17 1.1E-21 162.6 11.1 120 53-172 10-151 (158)
40 2i2y_A Fusion protein consists 99.7 2.6E-16 8.9E-21 155.0 12.2 134 133-296 13-148 (150)
41 2kn4_A Immunoglobulin G-bindin 99.7 8.7E-16 3E-20 152.1 15.5 140 126-297 2-151 (158)
42 3lqv_A PRE-mRNA branch site pr 99.6 5.3E-16 1.8E-20 145.7 7.9 102 17-123 5-109 (115)
43 4fxv_A ELAV-like protein 1; RN 99.6 1.4E-15 4.9E-20 140.2 8.6 77 17-93 16-98 (99)
44 4f25_A Polyadenylate-binding p 99.6 5.7E-15 1.9E-19 139.5 10.0 77 96-172 4-84 (115)
45 2hvz_A Splicing factor, argini 99.6 5.1E-15 1.7E-19 135.8 8.1 86 21-106 1-100 (101)
46 3r27_A HnRNP L, heterogeneous 99.5 8.8E-15 3E-19 135.6 9.4 82 13-94 14-97 (100)
47 1sjq_A Polypyrimidine tract-bi 99.5 1.6E-14 5.5E-19 135.1 10.2 79 17-95 13-93 (105)
48 2ad9_A Polypyrimidine tract-bi 99.5 1.6E-14 5.5E-19 138.1 10.4 90 7-96 18-109 (119)
49 1wex_A Hypothetical protein (r 99.5 2.5E-14 8.4E-19 133.5 11.5 84 13-96 8-93 (104)
50 4fxv_A ELAV-like protein 1; RN 99.5 2.1E-14 7.2E-19 132.4 9.8 75 96-170 18-98 (99)
51 1sjq_A Polypyrimidine tract-bi 99.5 1.7E-14 5.8E-19 134.9 9.0 80 94-173 13-94 (105)
52 2cpj_A Non-POU domain-containi 99.5 3E-14 1E-18 130.3 10.6 81 14-94 9-89 (99)
53 2wbr_A GW182, gawky, LD47780P; 99.5 1.9E-14 6.5E-19 129.9 8.8 75 17-91 4-78 (89)
54 3r27_A HnRNP L, heterogeneous 99.5 2.6E-14 8.8E-19 132.5 9.8 79 94-172 18-98 (100)
55 1why_A Hypothetical protein ri 99.5 6.2E-14 2.1E-18 127.7 12.3 81 16-96 13-95 (97)
56 1x4d_A Matrin 3; structural ge 99.5 2.2E-14 7.7E-19 133.4 9.2 79 16-94 11-92 (102)
57 2cq1_A PTB-like protein L; RRM 99.5 4.5E-14 1.5E-18 131.0 11.2 84 13-96 8-93 (101)
58 2la4_A Nuclear and cytoplasmic 99.5 2.7E-14 9.4E-19 130.9 9.6 79 15-93 22-100 (101)
59 2dnz_A Probable RNA-binding pr 99.5 5.4E-14 1.9E-18 127.2 11.3 80 17-96 2-87 (95)
60 2dnm_A SRP46 splicing factor; 99.5 3.9E-14 1.3E-18 130.4 10.3 84 13-96 6-95 (103)
61 2dgs_A DAZ-associated protein 99.5 7E-14 2.4E-18 127.7 11.8 82 14-96 4-91 (99)
62 1x5u_A Splicing factor 3B subu 99.5 6.7E-14 2.3E-18 129.1 11.6 84 14-97 9-98 (105)
63 2lxi_A RNA-binding protein 10; 99.5 6.4E-15 2.2E-19 133.6 4.5 77 20-96 1-85 (91)
64 2ytc_A PRE-mRNA-splicing facto 99.5 3.5E-14 1.2E-18 125.8 9.1 78 15-92 7-85 (85)
65 1x4d_A Matrin 3; structural ge 99.5 2.7E-14 9.3E-19 132.9 8.6 78 95-172 13-93 (102)
66 3s8s_A Histone-lysine N-methyl 99.5 2.8E-14 9.5E-19 134.2 8.8 77 17-93 3-85 (110)
67 1why_A Hypothetical protein ri 99.5 6.2E-14 2.1E-18 127.8 10.8 89 83-172 4-94 (97)
68 2do4_A Squamous cell carcinoma 99.5 5.3E-14 1.8E-18 128.8 10.1 83 14-96 11-98 (100)
69 2x1f_A MRNA 3'-END-processing 99.5 4.4E-14 1.5E-18 128.5 9.5 77 19-95 1-83 (96)
70 3mdf_A Peptidyl-prolyl CIS-tra 99.5 3.9E-14 1.3E-18 125.4 8.8 76 17-92 4-85 (85)
71 2ad9_A Polypyrimidine tract-bi 99.5 4.6E-14 1.6E-18 134.9 9.9 89 86-174 20-110 (119)
72 1whw_A Hypothetical protein ri 99.5 5.4E-14 1.8E-18 128.4 9.8 81 16-96 4-90 (99)
73 2kxn_B Transformer-2 protein h 99.5 6.1E-14 2.1E-18 135.5 10.6 84 13-96 39-128 (129)
74 2cq1_A PTB-like protein L; RRM 99.5 1E-13 3.6E-18 128.6 11.7 80 94-173 12-93 (101)
75 2dgv_A HnRNP M, heterogeneous 99.5 7.7E-14 2.6E-18 125.4 10.5 80 17-96 5-88 (92)
76 2khc_A Testis-specific RNP-typ 99.5 4.8E-14 1.7E-18 132.9 9.6 79 14-92 34-118 (118)
77 3bs9_A Nucleolysin TIA-1 isofo 99.5 3E-14 1E-18 126.7 7.5 76 18-93 4-85 (87)
78 2wbr_A GW182, gawky, LD47780P; 99.5 5.5E-14 1.9E-18 127.0 9.1 74 96-169 6-79 (89)
79 2lea_A Serine/arginine-rich sp 99.5 2.2E-14 7.7E-19 139.5 7.1 115 57-172 5-128 (135)
80 1x4a_A Splicing factor, argini 99.5 8.5E-14 2.9E-18 129.5 10.7 81 16-96 18-101 (109)
81 2dnh_A Bruno-like 5, RNA bindi 99.5 9.5E-14 3.3E-18 128.1 10.9 80 17-96 12-99 (105)
82 3md1_A Nuclear and cytoplasmic 99.5 5E-14 1.7E-18 124.1 8.4 75 20-94 1-81 (83)
83 1x4f_A Matrin 3; structural ge 99.5 5.2E-14 1.8E-18 133.2 9.1 78 16-93 21-101 (112)
84 1x5s_A Cold-inducible RNA-bind 99.5 7.6E-14 2.6E-18 128.1 10.0 82 16-97 8-95 (102)
85 2dnq_A RNA-binding protein 4B; 99.5 1.3E-13 4.3E-18 124.0 11.2 78 17-96 5-82 (90)
86 2d9p_A Polyadenylate-binding p 99.5 8.2E-14 2.8E-18 128.2 10.2 84 13-96 8-95 (103)
87 2cph_A RNA binding motif prote 99.5 1.6E-13 5.4E-18 126.9 12.1 83 14-96 9-99 (107)
88 2cpz_A CUG triplet repeat RNA- 99.5 7.5E-14 2.6E-18 131.1 10.0 83 14-96 19-107 (115)
89 2dgo_A Cytotoxic granule-assoc 99.5 7.4E-14 2.5E-18 131.1 9.9 84 13-96 8-97 (115)
90 2cqi_A Nucleolysin TIAR; RNA r 99.5 9.4E-14 3.2E-18 127.8 10.4 82 15-96 10-95 (103)
91 2e5h_A Zinc finger CCHC-type a 99.5 5.3E-14 1.8E-18 127.0 8.5 81 12-92 8-94 (94)
92 2cq0_A Eukaryotic translation 99.5 4.7E-14 1.6E-18 129.8 8.2 83 14-96 9-97 (103)
93 2cq3_A RNA-binding protein 9; 99.5 1.6E-13 5.4E-18 126.3 11.8 83 14-96 9-95 (103)
94 1whx_A Hypothetical protein ri 99.5 1.5E-14 5.3E-19 135.8 5.1 77 17-93 7-83 (111)
95 2e5j_A Methenyltetrahydrofolat 99.5 1.2E-13 4.2E-18 125.9 10.9 80 16-95 15-95 (97)
96 2ytc_A PRE-mRNA-splicing facto 99.5 1.1E-13 3.6E-18 122.7 9.8 76 94-169 9-85 (85)
97 1x4g_A Nucleolysin TIAR; struc 99.5 9.5E-14 3.3E-18 129.3 9.8 81 16-96 21-101 (109)
98 2lxi_A RNA-binding protein 10; 99.5 3E-14 1E-18 129.2 6.1 78 97-174 1-86 (91)
99 2dgp_A Bruno-like 4, RNA bindi 99.5 1.3E-13 4.5E-18 127.3 10.5 83 14-96 7-98 (106)
100 1p27_B RNA-binding protein 8A; 99.5 6.4E-14 2.2E-18 129.4 8.4 79 16-94 19-103 (106)
101 2lkz_A RNA-binding protein 5; 99.5 4.3E-14 1.5E-18 129.7 7.1 78 16-93 5-94 (95)
102 3bs9_A Nucleolysin TIA-1 isofo 99.5 9.6E-14 3.3E-18 123.4 9.2 78 94-171 3-86 (87)
103 1x4h_A RNA-binding protein 28; 99.5 1.4E-13 4.8E-18 128.1 10.7 83 15-97 10-104 (111)
104 2cqc_A Arginine/serine-rich sp 99.5 6.2E-14 2.1E-18 126.6 8.0 80 14-93 9-94 (95)
105 1x4c_A Splicing factor, argini 99.5 2.5E-13 8.6E-18 126.5 12.4 79 94-173 12-95 (108)
106 4a8x_A RNA-binding protein wit 99.5 1.1E-13 3.9E-18 123.0 9.6 78 18-95 2-86 (88)
107 2dhg_A TRNA selenocysteine ass 99.5 1.3E-13 4.3E-18 127.0 10.2 81 16-96 5-92 (104)
108 3s8s_A Histone-lysine N-methyl 99.5 9.6E-14 3.3E-18 130.5 9.5 80 95-174 4-89 (110)
109 2err_A Ataxin-2-binding protei 99.5 7.8E-14 2.7E-18 130.4 8.7 82 13-94 22-107 (109)
110 2cpf_A RNA binding motif prote 99.5 8.2E-14 2.8E-18 126.9 8.7 80 17-96 2-90 (98)
111 2jvr_A Nucleolar protein 3; RN 99.5 6.7E-14 2.3E-18 132.1 8.3 89 84-172 15-106 (111)
112 2cqb_A Peptidyl-prolyl CIS-tra 99.5 8E-14 2.7E-18 127.9 8.6 80 17-96 9-94 (102)
113 2jvo_A Nucleolar protein 3; nu 99.5 1E-13 3.5E-18 129.6 9.4 81 14-96 25-105 (108)
114 1x5t_A Splicing factor 3B subu 99.5 6.2E-14 2.1E-18 127.1 7.6 79 18-96 3-88 (96)
115 2cq3_A RNA-binding protein 9; 99.5 3.1E-13 1.1E-17 124.3 12.5 80 94-173 12-95 (103)
116 2jrs_A RNA-binding protein 39; 99.5 1.2E-13 3.9E-18 129.2 9.5 80 15-94 21-106 (108)
117 2la6_A RNA-binding protein FUS 99.5 1.5E-13 5E-18 125.7 10.0 78 15-92 8-99 (99)
118 1x4g_A Nucleolysin TIAR; struc 99.5 1.8E-13 6.3E-18 127.4 10.9 80 94-173 22-101 (109)
119 1oo0_B CG8781-PA, drosophila Y 99.5 9.1E-14 3.1E-18 129.4 8.7 81 15-95 21-107 (110)
120 2div_A TRNA selenocysteine ass 99.5 1.1E-13 3.8E-18 126.3 9.0 80 17-96 6-96 (99)
121 2cpe_A RNA-binding protein EWS 99.5 1.4E-13 4.8E-18 128.8 9.9 84 13-96 8-105 (113)
122 3lqv_A PRE-mRNA branch site pr 99.5 8.9E-14 3E-18 130.5 8.6 79 94-172 5-86 (115)
123 3p5t_L Cleavage and polyadenyl 99.5 3.3E-14 1.1E-18 128.0 5.4 76 21-96 2-85 (90)
124 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.9E-13 6.6E-18 120.8 10.2 76 94-169 4-85 (85)
125 1whw_A Hypothetical protein ri 99.5 2.3E-13 7.7E-18 124.2 10.9 80 94-173 5-90 (99)
126 2dgo_A Cytotoxic granule-assoc 99.5 3.4E-13 1.2E-17 126.5 12.4 81 94-174 12-98 (115)
127 3md1_A Nuclear and cytoplasmic 99.5 1.7E-13 5.7E-18 120.7 9.6 74 98-171 2-81 (83)
128 2fy1_A RNA-binding motif prote 99.5 1.4E-13 4.9E-18 130.2 9.7 77 17-93 4-85 (116)
129 2cqi_A Nucleolysin TIAR; RNA r 99.5 3.3E-13 1.1E-17 124.2 11.9 81 94-174 12-96 (103)
130 1wex_A Hypothetical protein (r 99.5 4.5E-13 1.5E-17 124.9 12.9 80 217-297 11-92 (104)
131 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.2E-13 4.1E-18 138.4 9.7 113 61-173 11-154 (165)
132 2dgx_A KIAA0430 protein; RRM d 99.5 2.2E-13 7.5E-18 124.2 10.5 79 94-172 6-91 (96)
133 2cpj_A Non-POU domain-containi 99.5 1.1E-13 3.8E-18 126.5 8.6 79 94-172 12-90 (99)
134 2xnq_A Nuclear polyadenylated 99.5 2E-13 6.8E-18 125.1 10.1 78 15-94 17-95 (97)
135 1fjc_A Nucleolin RBD2, protein 99.4 5.9E-14 2E-18 127.3 6.3 84 13-96 9-93 (96)
136 2ywk_A Putative RNA-binding pr 99.4 8.3E-14 2.9E-18 126.0 7.3 78 15-92 11-93 (95)
137 2la4_A Nuclear and cytoplasmic 99.4 1E-13 3.6E-18 127.0 8.0 77 94-170 24-100 (101)
138 2a3j_A U1 small nuclear ribonu 99.4 1.8E-13 6.1E-18 132.2 9.9 79 15-93 24-109 (127)
139 1nu4_A U1A RNA binding domain; 99.4 1E-13 3.6E-18 125.8 7.8 79 17-95 5-90 (97)
140 2x1f_A MRNA 3'-END-processing 99.4 2.2E-13 7.7E-18 123.8 10.0 77 96-172 1-83 (96)
141 2cpd_A Apobec-1 stimulating pr 99.4 3.5E-13 1.2E-17 123.2 11.1 82 13-96 8-91 (99)
142 2dgt_A RNA-binding protein 30; 99.4 2.3E-13 8E-18 122.7 9.8 81 14-96 4-84 (92)
143 2dnz_A Probable RNA-binding pr 99.4 2.6E-13 9E-18 122.7 10.2 79 94-172 2-86 (95)
144 1x4e_A RNA binding motif, sing 99.4 1E-13 3.4E-18 123.0 7.1 76 17-92 2-83 (85)
145 2dnq_A RNA-binding protein 4B; 99.4 2.4E-13 8.3E-18 122.1 9.6 78 93-172 4-81 (90)
146 1x5p_A Negative elongation fac 99.4 3.5E-13 1.2E-17 122.9 10.8 81 14-96 9-89 (97)
147 2dgu_A Heterogeneous nuclear r 99.4 6.3E-13 2.2E-17 122.5 12.7 79 95-175 9-87 (103)
148 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.3E-13 4.4E-18 126.7 8.0 78 15-94 14-98 (100)
149 2cpx_A Hypothetical protein FL 99.4 2.4E-13 8.1E-18 127.4 9.9 83 14-96 19-107 (115)
150 1x4c_A Splicing factor, argini 99.4 2.6E-13 8.8E-18 126.4 10.0 79 17-96 12-95 (108)
151 2jvr_A Nucleolar protein 3; RN 99.4 8.5E-14 2.9E-18 131.4 6.7 78 17-94 25-105 (111)
152 2hvz_A Splicing factor, argini 99.4 1.4E-13 4.7E-18 126.2 8.0 75 98-172 1-76 (101)
153 2d9p_A Polyadenylate-binding p 99.4 2.8E-13 9.7E-18 124.6 10.1 81 94-174 12-96 (103)
154 2e5h_A Zinc finger CCHC-type a 99.4 4.2E-13 1.4E-17 121.1 11.0 76 94-169 13-94 (94)
155 2kvi_A Nuclear polyadenylated 99.4 2.2E-13 7.6E-18 124.1 9.3 78 16-95 6-84 (96)
156 1x5t_A Splicing factor 3B subu 99.4 2.3E-13 8E-18 123.2 9.4 79 95-173 3-88 (96)
157 3ns6_A Eukaryotic translation 99.4 6.6E-14 2.3E-18 128.9 5.8 75 18-92 4-91 (100)
158 2do4_A Squamous cell carcinoma 99.4 4E-13 1.4E-17 122.9 11.0 79 94-172 14-97 (100)
159 2cqb_A Peptidyl-prolyl CIS-tra 99.4 2.6E-13 8.8E-18 124.5 9.7 80 94-173 9-94 (102)
160 2do0_A HnRNP M, heterogeneous 99.4 2.3E-13 7.8E-18 127.4 9.5 81 15-95 10-95 (114)
161 1wf1_A RNA-binding protein RAL 99.4 2.9E-13 9.9E-18 126.3 10.2 78 17-96 24-102 (110)
162 1wi8_A EIF-4B, eukaryotic tran 99.4 3E-13 1E-17 124.7 10.1 79 16-96 11-96 (104)
163 1p1t_A Cleavage stimulation fa 99.4 5.4E-14 1.9E-18 129.3 5.1 79 16-94 4-88 (104)
164 2cqd_A RNA-binding region cont 99.4 3.2E-13 1.1E-17 127.0 10.4 81 13-94 10-96 (116)
165 2cpf_A RNA binding motif prote 99.4 3.9E-13 1.3E-17 122.4 10.6 78 95-172 3-89 (98)
166 2do0_A HnRNP M, heterogeneous 99.4 7.7E-13 2.6E-17 123.8 12.8 79 94-172 12-95 (114)
167 3ex7_B RNA-binding protein 8A; 99.4 2.3E-13 7.9E-18 129.7 9.4 82 14-95 16-103 (126)
168 2fc9_A NCL protein; structure 99.4 1.4E-13 4.9E-18 126.1 7.7 82 15-96 10-93 (101)
169 2m2b_A RNA-binding protein 10; 99.4 2.2E-13 7.6E-18 131.3 9.2 82 13-95 16-109 (131)
170 2dnh_A Bruno-like 5, RNA bindi 99.4 3E-13 1E-17 124.7 9.7 81 94-174 12-100 (105)
171 2dgx_A KIAA0430 protein; RRM d 99.4 2.3E-13 8E-18 124.0 8.8 79 17-95 6-91 (96)
172 2cph_A RNA binding motif prote 99.4 2.9E-13 9.9E-18 125.1 9.5 80 94-173 12-99 (107)
173 1x4f_A Matrin 3; structural ge 99.4 1.4E-13 4.8E-18 130.2 7.4 79 94-172 22-103 (112)
174 1u6f_A Tcubp1, RNA-binding pro 99.4 1.9E-13 6.4E-18 132.6 8.6 82 15-96 37-124 (139)
175 4a8x_A RNA-binding protein wit 99.4 4.6E-13 1.6E-17 119.0 10.4 77 96-172 3-86 (88)
176 2krb_A Eukaryotic translation 99.4 2.2E-13 7.4E-18 120.1 8.1 70 20-89 1-81 (81)
177 3ucg_A Polyadenylate-binding p 99.4 2.1E-13 7.1E-18 121.7 8.0 76 19-95 5-86 (89)
178 2cq0_A Eukaryotic translation 99.4 3.8E-13 1.3E-17 123.7 9.9 79 94-172 12-96 (103)
179 2cpz_A CUG triplet repeat RNA- 99.4 4.9E-13 1.7E-17 125.6 10.8 80 94-173 22-107 (115)
180 2nlw_A Eukaryotic translation 99.4 3.2E-13 1.1E-17 125.2 9.3 78 16-93 11-99 (105)
181 2dng_A Eukaryotic translation 99.4 3E-13 1E-17 124.5 9.0 81 14-96 9-95 (103)
182 3ulh_A THO complex subunit 4; 99.4 2.3E-13 7.8E-18 125.9 8.2 78 15-92 24-106 (107)
183 2dnp_A RNA-binding protein 14; 99.4 3.8E-13 1.3E-17 120.8 9.4 79 16-96 5-83 (90)
184 1wf1_A RNA-binding protein RAL 99.4 5.3E-13 1.8E-17 124.5 10.7 89 82-172 6-101 (110)
185 1s79_A Lupus LA protein; RRM, 99.4 2.3E-13 8E-18 126.5 8.2 77 15-92 6-87 (103)
186 2dh8_A DAZ-associated protein 99.4 2.3E-13 7.8E-18 125.7 7.9 83 13-96 9-97 (105)
187 2dgs_A DAZ-associated protein 99.4 6.7E-13 2.3E-17 121.2 10.7 79 94-173 7-91 (99)
188 2dgt_A RNA-binding protein 30; 99.4 6.8E-13 2.3E-17 119.7 10.6 77 94-172 7-83 (92)
189 1u6f_A Tcubp1, RNA-binding pro 99.4 6.6E-13 2.3E-17 128.7 11.3 81 94-174 39-125 (139)
190 2err_A Ataxin-2-binding protei 99.4 3.9E-13 1.3E-17 125.7 9.3 78 94-171 26-107 (109)
191 2cqh_A IGF-II mRNA-binding pro 99.4 1.8E-13 6.1E-18 123.6 6.8 79 17-96 5-85 (93)
192 2ywk_A Putative RNA-binding pr 99.4 3.3E-13 1.1E-17 122.0 8.6 77 94-170 13-94 (95)
193 2dnp_A RNA-binding protein 14; 99.4 8.4E-13 2.9E-17 118.6 11.1 77 94-172 6-82 (90)
194 2cqc_A Arginine/serine-rich sp 99.4 4.5E-13 1.5E-17 121.0 9.2 77 94-170 12-94 (95)
195 1x5u_A Splicing factor 3B subu 99.4 5.9E-13 2E-17 122.7 10.2 80 94-173 12-97 (105)
196 2jvo_A Nucleolar protein 3; nu 99.4 5.3E-13 1.8E-17 124.8 9.9 77 94-172 28-104 (108)
197 1wg5_A Heterogeneous nuclear r 99.4 4.9E-13 1.7E-17 123.8 9.6 79 15-94 10-94 (104)
198 1wg1_A KIAA1579 protein, homol 99.4 1.7E-13 6E-18 122.8 6.3 76 17-93 2-77 (88)
199 1x4a_A Splicing factor, argini 99.4 8E-13 2.7E-17 122.9 11.0 79 94-172 19-100 (109)
200 2cqh_A IGF-II mRNA-binding pro 99.4 4.3E-13 1.5E-17 121.1 8.9 79 94-173 5-85 (93)
201 3s7r_A Heterogeneous nuclear r 99.4 2.3E-13 8E-18 121.2 7.0 76 15-91 6-87 (87)
202 1x5s_A Cold-inducible RNA-bind 99.4 3.1E-13 1.1E-17 123.9 8.1 80 94-173 9-94 (102)
203 1h2v_Z 20 kDa nuclear CAP bind 99.4 4.8E-13 1.6E-17 132.5 9.9 80 17-96 36-121 (156)
204 2dnm_A SRP46 splicing factor; 99.4 4.4E-13 1.5E-17 123.3 8.9 79 94-172 10-94 (103)
205 2fc8_A NCL protein; structure 99.4 3.5E-13 1.2E-17 123.6 8.2 81 16-96 11-94 (102)
206 2cqp_A RNA-binding protein 12; 99.4 2.1E-13 7.1E-18 124.2 6.6 78 16-93 11-94 (98)
207 2dgu_A Heterogeneous nuclear r 99.4 2.5E-12 8.7E-17 118.4 14.0 78 219-299 9-86 (103)
208 2dgw_A Probable RNA-binding pr 99.4 3.5E-13 1.2E-17 121.1 8.0 80 15-96 5-89 (91)
209 2xnq_A Nuclear polyadenylated 99.4 8.9E-13 3E-17 120.7 10.8 76 94-171 19-95 (97)
210 1whx_A Hypothetical protein ri 99.4 2.8E-13 9.6E-18 127.2 7.6 77 96-172 9-85 (111)
211 1oo0_B CG8781-PA, drosophila Y 99.4 5E-13 1.7E-17 124.4 9.2 78 95-172 24-107 (110)
212 2dgv_A HnRNP M, heterogeneous 99.4 4.6E-13 1.6E-17 120.3 8.6 79 94-172 5-87 (92)
213 2cq4_A RNA binding motif prote 99.4 1.7E-13 5.8E-18 128.5 5.9 76 17-93 22-103 (114)
214 2rs2_A Musashi-1, RNA-binding 99.4 3E-13 1E-17 126.6 7.3 82 14-96 19-106 (109)
215 2mss_A Protein (musashi1); RNA 99.4 2.8E-13 9.6E-18 117.3 6.7 69 22-91 1-75 (75)
216 2dis_A Unnamed protein product 99.4 4.3E-13 1.5E-17 124.5 8.3 80 17-96 5-94 (109)
217 2kt5_A RNA and export factor-b 99.4 5.3E-13 1.8E-17 127.1 9.1 79 16-94 31-114 (124)
218 1x4h_A RNA-binding protein 28; 99.4 1E-12 3.6E-17 122.1 10.8 80 94-173 12-103 (111)
219 1fj7_A Nucleolin RBD1, protein 99.4 8.6E-13 2.9E-17 120.9 10.0 80 16-96 13-97 (101)
220 1x5o_A RNA binding motif, sing 99.4 1.1E-12 3.7E-17 122.9 10.8 79 15-93 20-111 (114)
221 3pgw_S U1-70K; protein-RNA com 99.4 3E-13 1E-17 156.1 8.5 136 37-172 9-183 (437)
222 2lkz_A RNA-binding protein 5; 99.4 3.6E-13 1.2E-17 123.5 7.3 77 94-170 6-94 (95)
223 2la6_A RNA-binding protein FUS 99.4 6.2E-13 2.1E-17 121.6 8.7 77 93-169 9-99 (99)
224 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 7.6E-13 2.6E-17 127.8 9.9 77 15-91 58-140 (140)
225 1wi8_A EIF-4B, eukaryotic tran 99.4 8.5E-13 2.9E-17 121.7 9.8 78 94-173 12-96 (104)
226 2jrs_A RNA-binding protein 39; 99.4 6E-13 2.1E-17 124.3 8.8 82 91-172 20-107 (108)
227 1p27_B RNA-binding protein 8A; 99.4 4.8E-13 1.6E-17 123.5 8.1 78 95-172 21-104 (106)
228 2ek1_A RNA-binding protein 12; 99.4 1.6E-13 5.6E-18 124.0 4.8 76 17-92 12-93 (95)
229 2lea_A Serine/arginine-rich sp 99.4 3.8E-13 1.3E-17 130.8 7.7 83 14-96 41-129 (135)
230 3ulh_A THO complex subunit 4; 99.4 8.5E-13 2.9E-17 122.1 9.7 76 94-169 26-106 (107)
231 2cpi_A CCR4-NOT transcription 99.4 4.3E-13 1.5E-17 125.6 7.8 79 17-95 12-102 (111)
232 2div_A TRNA selenocysteine ass 99.4 6E-13 2.1E-17 121.4 8.5 79 94-172 6-95 (99)
233 2khc_A Testis-specific RNP-typ 99.4 4.8E-13 1.7E-17 126.0 8.0 76 94-169 37-118 (118)
234 1x4b_A Heterogeneous nuclear r 99.4 2.9E-13 1E-17 127.3 6.4 79 17-96 24-108 (116)
235 2cqd_A RNA-binding region cont 99.4 1.9E-12 6.6E-17 121.7 12.0 78 94-172 14-97 (116)
236 2cq2_A Hypothetical protein LO 99.4 5.4E-13 1.8E-17 126.5 7.9 77 16-92 21-104 (114)
237 1nu4_A U1A RNA binding domain; 99.4 1.1E-12 3.6E-17 119.1 9.5 79 94-172 5-90 (97)
238 1x5p_A Negative elongation fac 99.4 2.2E-12 7.4E-17 117.6 11.5 77 94-172 12-88 (97)
239 2cq2_A Hypothetical protein LO 99.4 7.8E-13 2.7E-17 125.4 8.8 79 94-172 22-107 (114)
240 1rk8_A CG8781-PA, CG8781-PA pr 99.4 1.1E-12 3.9E-17 131.3 10.5 136 138-298 11-154 (165)
241 2cpe_A RNA-binding protein EWS 99.4 1.1E-12 3.6E-17 122.8 9.6 79 94-172 12-104 (113)
242 3ucg_A Polyadenylate-binding p 99.4 1.1E-12 3.9E-17 116.9 9.3 74 97-171 6-85 (89)
243 2cpd_A Apobec-1 stimulating pr 99.4 2.5E-12 8.4E-17 117.5 11.7 77 94-172 12-90 (99)
244 2e5g_A U6 snRNA-specific termi 99.4 1.7E-12 6E-17 117.5 10.6 78 17-95 5-83 (94)
245 1wel_A RNA-binding protein 12; 99.4 2.4E-13 8.3E-18 129.7 5.1 77 15-92 20-102 (124)
246 2dhg_A TRNA selenocysteine ass 99.4 6.6E-13 2.3E-17 122.2 7.8 81 94-174 6-93 (104)
247 1uaw_A Mouse-musashi-1; RNP-ty 99.4 2.8E-13 9.6E-18 117.6 5.0 70 21-91 1-76 (77)
248 2cpi_A CCR4-NOT transcription 99.4 9.9E-13 3.4E-17 123.2 9.0 78 95-172 13-102 (111)
249 1wg1_A KIAA1579 protein, homol 99.4 1.2E-12 4.2E-17 117.3 9.1 76 95-171 3-78 (88)
250 2cqg_A TDP-43, TAR DNA-binding 99.4 1.2E-12 4E-17 120.5 9.2 82 13-96 8-95 (103)
251 3n9u_C Cleavage and polyadenyl 99.4 5.4E-13 1.8E-17 133.1 7.5 74 19-92 54-135 (156)
252 2ki2_A SS-DNA binding protein 99.4 2E-13 6.8E-18 122.4 3.8 73 21-94 2-80 (90)
253 2kxn_B Transformer-2 protein h 99.4 8.4E-13 2.9E-17 127.5 8.4 80 93-172 42-127 (129)
254 1p1t_A Cleavage stimulation fa 99.4 5.5E-13 1.9E-17 122.6 6.8 79 96-174 7-91 (104)
255 2fy1_A RNA-binding motif prote 99.4 3.8E-12 1.3E-16 120.4 12.6 80 219-299 5-89 (116)
256 2lmi_A GRSF-1, G-rich sequence 99.4 7.6E-13 2.6E-17 123.2 7.4 77 15-92 6-90 (107)
257 2hzc_A Splicing factor U2AF 65 99.4 7.4E-13 2.5E-17 117.6 7.0 73 17-90 3-86 (87)
258 2dgp_A Bruno-like 4, RNA bindi 99.4 8.3E-13 2.8E-17 121.9 7.6 80 93-172 9-97 (106)
259 1x4e_A RNA binding motif, sing 99.4 3.6E-13 1.2E-17 119.4 4.9 76 94-169 2-83 (85)
260 2jwn_A Embryonic polyadenylate 99.4 8.2E-13 2.8E-17 125.5 7.4 77 19-96 35-117 (124)
261 2e5j_A Methenyltetrahydrofolat 99.3 1.1E-12 3.9E-17 119.5 8.0 78 94-172 16-95 (97)
262 3p5t_L Cleavage and polyadenyl 99.3 3.5E-13 1.2E-17 121.3 4.4 75 98-172 2-84 (90)
263 3egn_A RNA-binding protein 40; 99.3 6.1E-13 2.1E-17 129.8 6.4 79 17-95 42-131 (143)
264 1wez_A HnRNP H', FTP-3, hetero 99.3 8.4E-13 2.9E-17 122.3 6.9 80 15-96 10-94 (102)
265 2e44_A Insulin-like growth fac 99.3 2.6E-12 8.8E-17 116.5 10.0 78 17-94 12-92 (96)
266 3s7r_A Heterogeneous nuclear r 99.3 2.5E-12 8.4E-17 114.5 9.5 75 93-168 7-87 (87)
267 2cqp_A RNA-binding protein 12; 99.3 7.4E-13 2.5E-17 120.5 6.2 78 94-171 12-95 (98)
268 2bz2_A Negative elongation fac 99.3 2E-12 6.8E-17 123.6 9.4 79 15-95 34-112 (121)
269 3ns6_A Eukaryotic translation 99.3 7.5E-13 2.6E-17 121.8 6.2 77 95-171 4-93 (100)
270 2dgw_A Probable RNA-binding pr 99.3 2.8E-12 9.7E-17 115.2 9.9 78 93-172 6-88 (91)
271 2cpy_A RNA-binding protein 12; 99.3 5.5E-13 1.9E-17 125.5 5.4 76 16-92 11-92 (114)
272 2dis_A Unnamed protein product 99.3 1.9E-12 6.6E-17 120.1 8.9 79 95-173 6-94 (109)
273 1h2v_Z 20 kDa nuclear CAP bind 99.3 3E-12 1E-16 126.7 10.9 80 94-173 36-121 (156)
274 3beg_B Splicing factor, argini 99.3 1.7E-12 5.8E-17 122.6 8.5 70 18-88 14-83 (115)
275 2rs2_A Musashi-1, RNA-binding 99.3 3.3E-12 1.1E-16 119.4 10.4 78 94-172 22-105 (109)
276 2dng_A Eukaryotic translation 99.3 4.4E-12 1.5E-16 116.7 11.0 78 93-172 11-94 (103)
277 2a3j_A U1 small nuclear ribonu 99.3 2E-12 7E-17 124.8 9.0 80 94-173 26-112 (127)
278 2hgl_A HNRPF protein, heteroge 99.3 1.1E-12 3.7E-17 128.3 6.8 77 15-92 39-123 (136)
279 2diu_A KIAA0430 protein; struc 99.3 3.2E-12 1.1E-16 116.6 9.4 74 17-94 5-84 (96)
280 2db1_A Heterogeneous nuclear r 99.3 6.7E-13 2.3E-17 126.0 5.2 75 17-92 14-96 (118)
281 2hzc_A Splicing factor U2AF 65 99.3 1.7E-12 5.9E-17 115.2 7.5 73 94-167 3-86 (87)
282 1sjr_A Polypyrimidine tract-bi 99.3 2E-12 6.8E-17 129.9 8.8 78 17-94 43-124 (164)
283 3ex7_B RNA-binding protein 8A; 99.3 4.6E-12 1.6E-16 120.7 10.8 81 218-299 19-105 (126)
284 2dh8_A DAZ-associated protein 99.3 1.5E-12 5.3E-17 120.0 7.3 78 94-172 13-96 (105)
285 2lcw_A RNA-binding protein FUS 99.0 1.3E-13 4.5E-18 129.8 0.0 81 16-96 3-97 (116)
286 2kvi_A Nuclear polyadenylated 99.3 3.3E-12 1.1E-16 116.3 9.3 81 217-299 6-86 (96)
287 1iqt_A AUF1, heterogeneous nuc 99.3 8.8E-13 3E-17 114.0 5.1 69 22-91 1-75 (75)
288 2fc9_A NCL protein; structure 99.3 4.4E-12 1.5E-16 116.1 10.1 76 94-172 12-92 (101)
289 2j76_E EIF-4B, EIF4B, eukaryot 99.3 1.3E-12 4.4E-17 120.0 6.5 76 94-171 16-98 (100)
290 2e44_A Insulin-like growth fac 99.3 2.6E-12 8.9E-17 116.5 8.4 78 94-171 12-92 (96)
291 2ek1_A RNA-binding protein 12; 99.3 9.6E-13 3.3E-17 119.0 5.5 76 94-169 12-93 (95)
292 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 3.2E-12 1.1E-16 123.5 9.4 75 94-168 60-140 (140)
293 2kt5_A RNA and export factor-b 99.3 3.5E-12 1.2E-16 121.4 9.6 79 94-172 32-115 (124)
294 1s79_A Lupus LA protein; RRM, 99.3 1.8E-12 6E-17 120.5 7.3 77 94-171 8-89 (103)
295 2cq4_A RNA binding motif prote 99.3 3.1E-12 1E-16 119.9 8.8 76 97-173 25-106 (114)
296 3n9u_C Cleavage and polyadenyl 99.3 3E-12 1E-16 127.7 9.2 78 95-172 53-138 (156)
297 3zzy_A Polypyrimidine tract-bi 99.3 3.1E-12 1E-16 124.0 8.8 77 18-94 26-106 (130)
298 3zzy_A Polypyrimidine tract-bi 99.3 4.7E-12 1.6E-16 122.7 10.1 76 97-172 28-107 (130)
299 2e5i_A Heterogeneous nuclear r 99.3 4.9E-12 1.7E-16 121.7 10.1 77 18-94 21-102 (124)
300 2e5i_A Heterogeneous nuclear r 99.3 4.4E-12 1.5E-16 122.0 9.7 74 99-172 27-103 (124)
301 2jwn_A Embryonic polyadenylate 99.3 3.7E-12 1.3E-16 121.0 9.1 75 97-172 36-116 (124)
302 2nlw_A Eukaryotic translation 99.3 4E-12 1.4E-16 117.8 9.0 78 94-171 12-100 (105)
303 3beg_B Splicing factor, argini 99.3 2.3E-12 7.9E-17 121.6 7.3 75 95-170 14-93 (115)
304 1x4b_A Heterogeneous nuclear r 99.3 5.5E-12 1.9E-16 118.6 9.7 76 97-173 27-108 (116)
305 2cpy_A RNA-binding protein 12; 99.3 2.1E-12 7.3E-17 121.5 6.4 78 94-172 12-95 (114)
306 1x5o_A RNA binding motif, sing 99.3 6E-12 2E-16 117.8 9.2 78 94-171 22-112 (114)
307 1uaw_A Mouse-musashi-1; RNP-ty 99.3 2.2E-12 7.5E-17 111.9 5.7 70 98-168 1-76 (77)
308 2hgm_A HNRPF protein, heteroge 99.3 5E-12 1.7E-16 122.0 8.7 76 15-92 37-119 (126)
309 2mss_A Protein (musashi1); RNA 99.3 1.9E-12 6.5E-17 112.0 5.1 69 99-168 1-75 (75)
310 2e5g_A U6 snRNA-specific termi 99.3 9.5E-12 3.2E-16 112.7 9.9 78 94-172 5-83 (94)
311 2f3j_A RNA and export factor b 99.3 5.2E-12 1.8E-16 128.5 9.1 78 16-93 84-166 (177)
312 1sjr_A Polypyrimidine tract-bi 99.3 5E-12 1.7E-16 127.0 8.6 77 96-172 45-125 (164)
313 3q2s_C Cleavage and polyadenyl 99.3 2.3E-12 7.8E-17 136.4 6.3 74 19-92 67-148 (229)
314 3d2w_A TAR DNA-binding protein 99.3 6.7E-12 2.3E-16 113.2 8.5 76 16-95 7-85 (89)
315 2cqg_A TDP-43, TAR DNA-binding 99.3 2.5E-11 8.5E-16 111.5 12.4 77 94-172 12-94 (103)
316 2hgl_A HNRPF protein, heteroge 99.3 3.3E-12 1.1E-16 124.7 6.9 79 92-171 39-125 (136)
317 2hgn_A Heterogeneous nuclear r 99.3 2.4E-12 8.3E-17 126.2 5.9 78 17-96 43-125 (139)
318 2cpx_A Hypothetical protein FL 99.3 5.3E-12 1.8E-16 118.2 7.9 80 94-173 22-107 (115)
319 2dnn_A RNA-binding protein 12; 99.3 3.4E-12 1.2E-16 120.0 6.5 73 18-92 14-91 (109)
320 2krb_A Eukaryotic translation 99.3 2.6E-12 8.8E-17 113.2 5.3 69 97-165 1-80 (81)
321 2db1_A Heterogeneous nuclear r 99.3 5.3E-12 1.8E-16 119.8 7.7 78 94-172 14-99 (118)
322 2hgn_A Heterogeneous nuclear r 99.3 1.8E-12 6.1E-17 127.1 4.4 114 56-172 1-124 (139)
323 2ki2_A SS-DNA binding protein 99.3 1.1E-12 3.7E-17 117.6 2.6 74 98-172 2-81 (90)
324 1wg5_A Heterogeneous nuclear r 99.3 7.2E-12 2.5E-16 115.9 8.1 77 94-171 12-94 (104)
325 1fjc_A Nucleolin RBD2, protein 99.3 6.1E-12 2.1E-16 114.0 7.4 79 94-172 13-92 (96)
326 3pgw_S U1-70K; protein-RNA com 99.3 2.1E-12 7.1E-17 149.1 5.2 79 219-298 100-184 (437)
327 2m2b_A RNA-binding protein 10; 99.3 2.2E-12 7.6E-17 124.3 4.6 78 94-172 20-109 (131)
328 2bz2_A Negative elongation fac 99.3 9E-12 3.1E-16 119.0 8.6 77 94-172 36-112 (121)
329 2fc8_A NCL protein; structure 99.3 1.6E-11 5.5E-16 112.5 9.9 77 94-173 12-94 (102)
330 1fj7_A Nucleolin RBD1, protein 99.2 2.2E-12 7.6E-17 118.1 3.8 76 95-172 15-96 (101)
331 1wf0_A TDP-43, TAR DNA-binding 99.2 3.9E-12 1.3E-16 113.7 5.1 77 18-96 3-80 (88)
332 3d2w_A TAR DNA-binding protein 99.2 1.4E-11 4.9E-16 111.1 8.8 76 93-172 7-85 (89)
333 2dha_A FLJ20171 protein; RRM d 99.2 3E-12 1E-16 122.9 4.6 73 18-91 21-102 (123)
334 3u1l_A PRE-mRNA-splicing facto 99.2 1E-11 3.5E-16 132.2 8.9 78 17-94 131-229 (240)
335 3u1l_A PRE-mRNA-splicing facto 99.2 1.9E-11 6.6E-16 130.1 10.6 96 77-172 107-230 (240)
336 1wez_A HnRNP H', FTP-3, hetero 99.2 9.5E-12 3.2E-16 115.2 6.6 77 94-172 12-93 (102)
337 1wel_A RNA-binding protein 12; 99.2 3.5E-12 1.2E-16 121.6 3.7 79 93-172 21-105 (124)
338 1wf0_A TDP-43, TAR DNA-binding 99.2 1.2E-11 4E-16 110.6 6.8 76 95-172 3-79 (88)
339 2xs2_A Deleted in azoospermia- 99.2 2.9E-12 9.9E-17 117.6 2.7 75 17-93 6-85 (102)
340 1iqt_A AUF1, heterogeneous nuc 99.2 5.7E-12 2E-16 108.8 4.4 69 99-168 1-75 (75)
341 3egn_A RNA-binding protein 40; 99.2 1.6E-11 5.3E-16 119.8 7.8 80 93-172 41-131 (143)
342 3q2s_C Cleavage and polyadenyl 99.2 9.9E-12 3.4E-16 131.5 6.8 76 96-171 67-150 (229)
343 2lcw_A RNA-binding protein FUS 98.8 1.4E-12 5E-17 122.7 0.0 80 94-173 4-97 (116)
344 2dnl_A Cytoplasmic polyadenyla 99.2 2.3E-11 7.7E-16 114.4 8.1 72 17-91 5-85 (114)
345 2diu_A KIAA0430 protein; struc 99.2 2.4E-11 8E-16 110.9 7.8 73 96-172 7-85 (96)
346 2dnn_A RNA-binding protein 12; 99.2 3.3E-11 1.1E-15 113.2 9.1 73 97-171 16-93 (109)
347 2lmi_A GRSF-1, G-rich sequence 99.2 7.6E-12 2.6E-16 116.4 4.6 78 94-172 8-93 (107)
348 2pe8_A Splicing factor 45; RRM 99.2 7E-11 2.4E-15 110.3 10.1 77 219-295 6-93 (105)
349 2f3j_A RNA and export factor b 99.2 3E-11 1E-15 123.0 8.1 78 95-172 86-168 (177)
350 2xs2_A Deleted in azoospermia- 99.2 1.2E-11 4.1E-16 113.5 4.4 76 95-172 7-87 (102)
351 2voo_A Lupus LA protein; RNA-b 99.1 1.8E-10 6.1E-15 118.7 11.9 106 65-171 63-187 (193)
352 2dha_A FLJ20171 protein; RRM d 99.1 2.9E-11 1E-15 116.1 5.5 77 94-171 20-105 (123)
353 2pe8_A Splicing factor 45; RRM 99.1 1.8E-10 6.1E-15 107.5 10.1 77 95-171 6-94 (105)
354 2dit_A HIV TAT specific factor 99.1 1.4E-10 4.9E-15 108.7 9.1 80 15-94 10-102 (112)
355 3v4m_A Splicing factor U2AF 65 99.1 3.3E-10 1.1E-14 105.6 10.7 77 219-295 3-96 (105)
356 2dit_A HIV TAT specific factor 99.1 5.9E-10 2E-14 104.5 12.5 80 217-296 11-102 (112)
357 2hgm_A HNRPF protein, heteroge 99.1 6.7E-11 2.3E-15 114.1 6.1 76 94-171 39-121 (126)
358 2dnl_A Cytoplasmic polyadenyla 99.1 1.5E-10 5.2E-15 108.8 7.6 75 94-171 5-88 (114)
359 2voo_A Lupus LA protein; RNA-b 99.1 1.5E-10 5E-15 119.3 7.8 74 19-93 108-186 (193)
360 3tht_A Alkylated DNA repair pr 99.0 3.5E-10 1.2E-14 126.4 9.0 77 15-91 13-96 (345)
361 2j8a_A Histone-lysine N-methyl 99.0 1.2E-10 4.2E-15 112.0 3.6 72 21-92 3-94 (136)
362 3ue2_A Poly(U)-binding-splicin 99.0 6.7E-10 2.3E-14 105.9 8.5 77 219-295 18-108 (118)
363 3s6e_A RNA-binding protein 39; 99.0 7.8E-10 2.7E-14 104.8 8.6 76 219-294 5-91 (114)
364 3v4m_A Splicing factor U2AF 65 99.0 1E-09 3.5E-14 102.3 8.9 77 95-171 3-97 (105)
365 3tht_A Alkylated DNA repair pr 99.0 9E-10 3.1E-14 123.0 8.8 76 94-169 15-97 (345)
366 2j8a_A Histone-lysine N-methyl 98.9 8.4E-10 2.9E-14 106.3 6.5 73 98-170 3-95 (136)
367 2d9o_A DNAJ (HSP40) homolog, s 98.9 5.9E-09 2E-13 96.5 11.8 77 18-96 8-92 (100)
368 2d9o_A DNAJ (HSP40) homolog, s 98.9 2.7E-09 9.1E-14 98.8 9.0 63 233-297 28-91 (100)
369 1jmt_A Splicing factor U2AF 35 98.9 1.6E-09 5.4E-14 100.8 7.5 57 237-293 41-103 (104)
370 3ue2_A Poly(U)-binding-splicin 98.9 2.7E-09 9.3E-14 101.6 9.1 77 95-171 18-109 (118)
371 3s6e_A RNA-binding protein 39; 98.9 4.9E-09 1.7E-13 99.3 9.6 78 94-171 4-93 (114)
372 1jmt_A Splicing factor U2AF 35 98.9 8.5E-10 2.9E-14 102.6 3.6 67 102-168 20-103 (104)
373 1owx_A Lupus LA protein, SS-B, 98.6 5.7E-08 2E-12 92.8 8.0 77 95-171 16-96 (121)
374 1owx_A Lupus LA protein, SS-B, 98.6 1.7E-07 5.7E-12 89.6 9.8 76 16-91 14-93 (121)
375 2dnr_A Synaptojanin-1; RRM dom 98.6 1.6E-07 5.6E-12 85.0 9.0 57 237-296 30-86 (91)
376 2dnr_A Synaptojanin-1; RRM dom 98.4 4E-07 1.4E-11 82.4 8.1 74 95-171 5-86 (91)
377 3dxb_A Thioredoxin N-terminall 98.4 2.9E-07 1E-11 95.9 7.2 61 234-294 141-211 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.3 7.5E-07 2.6E-11 81.1 7.0 75 217-294 11-93 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.2 1.4E-06 4.9E-11 79.2 5.8 71 95-168 13-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.1 3.6E-06 1.2E-10 87.6 6.3 63 109-171 141-213 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.0 2.6E-05 8.8E-10 72.6 9.1 75 94-168 18-97 (117)
382 2l9w_A U4/U6 snRNA-associated- 97.9 6.5E-05 2.2E-09 69.9 10.6 73 218-292 19-96 (117)
383 1ow1_A Smart/HDAC1 associated 97.7 3.2E-05 1.1E-09 78.9 5.7 110 510-619 38-172 (195)
384 2dhx_A Poly (ADP-ribose) polym 97.6 0.00044 1.5E-08 63.8 10.8 90 17-110 5-99 (104)
385 1wey_A Calcipressin 1; structu 97.2 0.0012 4E-08 61.2 9.4 78 218-295 3-83 (104)
386 1wey_A Calcipressin 1; structu 96.9 0.0018 6.2E-08 59.9 6.9 74 97-170 5-83 (104)
387 1wwh_A Nucleoporin 35, nucleop 96.2 0.012 4E-07 55.9 7.8 72 218-293 22-94 (119)
388 1wwh_A Nucleoporin 35, nucleop 96.1 0.011 3.8E-07 56.0 7.4 72 17-90 21-93 (119)
389 2dhx_A Poly (ADP-ribose) polym 96.1 0.037 1.3E-06 51.1 10.7 74 95-171 6-84 (104)
390 1uw4_A UPF3X; nonsense mediate 96.1 0.019 6.4E-07 52.1 8.4 62 98-159 2-71 (91)
391 1uw4_A UPF3X; nonsense mediate 96.0 0.016 5.4E-07 52.5 7.4 64 21-84 2-73 (91)
392 1whv_A Poly(A)-specific ribonu 95.7 0.026 8.8E-07 51.6 7.5 58 95-154 13-70 (100)
393 3p3d_A Nucleoporin 53; structu 94.9 0.021 7.1E-07 55.0 4.5 71 219-293 6-96 (132)
394 3pq1_A Poly(A) RNA polymerase; 94.2 0.026 9E-07 65.2 4.2 54 19-73 52-106 (464)
395 1whv_A Poly(A)-specific ribonu 94.0 0.15 5.3E-06 46.5 7.9 59 16-77 12-70 (100)
396 2l08_A Regulator of nonsense t 94.0 0.13 4.3E-06 47.1 7.3 73 96-168 8-93 (97)
397 3ctr_A Poly(A)-specific ribonu 93.1 0.089 3E-06 48.2 4.8 53 99-154 8-60 (101)
398 2l08_A Regulator of nonsense t 93.1 0.081 2.8E-06 48.4 4.5 66 18-83 7-80 (97)
399 3p3d_A Nucleoporin 53; structu 91.9 0.1 3.5E-06 50.1 3.8 70 20-91 7-96 (132)
400 3ctr_A Poly(A)-specific ribonu 90.3 0.22 7.5E-06 45.6 4.1 55 221-279 6-60 (101)
401 3pq1_A Poly(A) RNA polymerase; 90.1 0.14 4.8E-06 59.2 3.4 54 221-276 53-107 (464)
402 3d45_A Poly(A)-specific ribonu 63.7 16 0.00056 42.5 8.9 57 19-78 439-495 (507)
403 2g0c_A ATP-dependent RNA helic 53.1 26 0.00089 29.6 6.2 68 224-294 3-75 (76)
404 3d45_A Poly(A)-specific ribonu 53.0 30 0.001 40.3 8.6 55 221-279 440-494 (507)
405 3dxt_A JMJC domain-containing 46.1 12 0.00039 41.8 3.4 55 553-616 4-61 (354)
406 2ox0_A JMJC domain-containing 37.3 15 0.00052 41.2 2.7 44 562-614 32-77 (381)
407 2f06_A Conserved hypothetical 31.9 3E+02 0.01 25.5 10.7 108 33-156 19-133 (144)
408 3opt_A DNA damage-responsive t 22.5 28 0.00097 38.9 1.5 41 566-616 14-56 (373)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.5e-38 Score=341.28 Aligned_cols=235 Identities=19% Similarity=0.295 Sum_probs=211.4
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCCCC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKP 96 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~~~ 96 (957)
..++++|||+|||.++|+++|+++|++|| |.+|+.++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++ ..
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~---~~ 94 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ---PT 94 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC---CC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec---CC
Confidence 45789999999999999999999999999 999999999999999999999999999999999999999999997 45
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
.++|||+|||..+++++|+++|+.||.|..+++++++ |+|||+|.+.++|.+|++.|+|..++|+.|.|.|+..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 6899999999999999999999999999999998763 5899999999999999999999999999999999865
Q ss_pred CccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCC-CHHHHHHHHhhcCCe
Q 002168 171 QPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQM-DEQMLHNAMILFGEI 249 (957)
Q Consensus 171 k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~v-tEeeLr~~Fs~fG~V 249 (957)
+.... .....++|+|++++. .+ ++++|+++|+.||.|
T Consensus 175 ~~~~~-----------------------------------------~~~~~~~l~v~nlp~-~~~~~~~l~~~f~~~G~i 212 (284)
T 3smz_A 175 GQLTP-----------------------------------------ALLHSRCLCVDRLPP-GFNDVDALCRALSAVHSP 212 (284)
T ss_dssp GGCCT-----------------------------------------TTTSCSEEEEECCCT-TCCCHHHHHHHTCSSSCC
T ss_pred CCCCc-----------------------------------------ccCCccEEEEecCCc-ccCCHHHHHHHhhCCCCe
Confidence 43110 112345667767664 55 999999999999999
Q ss_pred EEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 002168 250 ERIKSYPS-----RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 297 (957)
Q Consensus 250 ~~VkI~~s-----rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~ 297 (957)
.+++++.+ +|+|||+|.+.++|.+|++.|||..|+|+.|.|.|++.+.
T Consensus 213 ~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 213 TFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp SEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred EEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 99998754 7899999999999999999999999999999999997653
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.4e-37 Score=334.86 Aligned_cols=238 Identities=18% Similarity=0.276 Sum_probs=203.8
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecC----CCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS----SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~gr----skGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
...+++++|||+|||.++|+++|+++|+.||.|.+|++.+ ++|||||+|.+.++|.+|+ ++++..|.|+.|.|.+
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSH 114 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEE
Confidence 3467899999999999999999999999999999988433 6899999999999999999 6999999999999998
Q ss_pred cCCCCCCCceEEcCCCccCCHHHHHHhhcccC-CEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002168 91 ARPAKPSKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (957)
Q Consensus 91 A~p~~~sr~LyVgNLP~~vTeedL~elFskfG-~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~ 164 (957)
+ ..++|||+|||..+++++|+++|+.|| .|..|.++++ +|+|||+|.+.++|.+|++.|+|..+.|+.|.
T Consensus 115 ~----~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 190 (292)
T 2ghp_A 115 L----TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLV 190 (292)
T ss_dssp C----CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred C----CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 7 478999999999999999999999999 9999999874 58999999999999999999999999999999
Q ss_pred EEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCC-CCHHHHHHHH
Q 002168 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQ-MDEQMLHNAM 243 (957)
Q Consensus 165 V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~-vtEeeLr~~F 243 (957)
|.|+......... .......++|+|++++. . +++++|+++|
T Consensus 191 v~~a~~~~~~~~~-------------------------------------~~~~~~~~~l~v~nlp~-~~~t~~~l~~~F 232 (292)
T 2ghp_A 191 TKVSNPLEKSKRT-------------------------------------DSATLEGREIMIRNLST-ELLDENLLRESF 232 (292)
T ss_dssp EEECCCC----------------------------------------------CCTTTEEEEEEECT-TTCCHHHHHHHH
T ss_pred EEECCCCcccccc-------------------------------------cccCCCCceEEEECCCc-ccCCHHHHHHHH
Confidence 9998755321110 01233456677777774 6 9999999999
Q ss_pred hhcCCeEEEEEeC-------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 244 ILFGEIERIKSYP-------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 244 s~fG~V~~VkI~~-------srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
+.||.|..|++++ .+|||||+|.+.++|.+|+ .|||+.|+|+.|.|.|++++
T Consensus 233 ~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 233 EGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred hccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999999964 3689999999999999999 99999999999999999765
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.95 E-value=4.4e-28 Score=252.77 Aligned_cols=157 Identities=26% Similarity=0.465 Sum_probs=143.2
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
..+.++|||+|||+++||++|+++|++||+|.+|+ +++++|||||+|.+.++|.+|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 35778999999999999999999999999999887 356789999999999999999999999999999999999
Q ss_pred cCCCC-----CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec----CCceEEEeCCHHHHHHHHHHhCCceeCCe
Q 002168 91 ARPAK-----PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGE 161 (957)
Q Consensus 91 A~p~~-----~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr 161 (957)
+.... ..++|||+||+..+|+++|+++|++||.|.+|+|+++ +|+|||+|.+.++|.+|++.|||..|+|+
T Consensus 92 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 86533 4678999999999999999999999999999999977 46899999999999999999999999999
Q ss_pred EEEEEEccCCcc
Q 002168 162 QLRVDFLRSQPS 173 (957)
Q Consensus 162 ~I~V~~ak~k~~ 173 (957)
.|.|.|+..+..
T Consensus 172 ~i~V~~a~~~~~ 183 (213)
T 4f02_A 172 KVFVGRFKSRKE 183 (213)
T ss_dssp ECEEEECCCHHH
T ss_pred EEEEEEcCCCcc
Confidence 999999987653
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.2e-27 Score=234.00 Aligned_cols=149 Identities=27% Similarity=0.480 Sum_probs=138.7
Q ss_pred CEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCC-
Q 002168 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA- 94 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~- 94 (957)
++|||+|||.++|+++|+++|++||.|.+|+. ++++|||||+|.+.++|.+|++.+++..+.|+.|+|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999998883 557899999999999999999999999999999999998643
Q ss_pred ----CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002168 95 ----KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (957)
Q Consensus 95 ----~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~ 164 (957)
...++|||+|||..+++++|+++|++||.|.++.+..+ +|+|||+|.+.++|.+|++.|||..++|+.|+
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 34678999999999999999999999999999999977 46899999999999999999999999999999
Q ss_pred EEEcc
Q 002168 165 VDFLR 169 (957)
Q Consensus 165 V~~ak 169 (957)
|.|++
T Consensus 161 v~~a~ 165 (166)
T 3md3_A 161 INWAA 165 (166)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99986
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=4.3e-27 Score=233.12 Aligned_cols=150 Identities=32% Similarity=0.525 Sum_probs=139.8
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
++++|||+|||.++++++|+++|++||.|.+|+ +++++|||||+|.+.++|.+|++.+++..+.|+.|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 579999999999999999999999999999988 34467999999999999999999999999999999999997
Q ss_pred CCC---CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCC--e
Q 002168 93 PAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGG--E 161 (957)
Q Consensus 93 p~~---~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~G--r 161 (957)
+.. ..++|||+|||..+++++|+++|++||.|..+.+.+++ |+|||+|.+.++|.+|++.|||..+.| +
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 161 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQ 161 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCe
Confidence 643 56899999999999999999999999999999999875 689999999999999999999999987 9
Q ss_pred EEEEEEc
Q 002168 162 QLRVDFL 168 (957)
Q Consensus 162 ~I~V~~a 168 (957)
.|+|.|+
T Consensus 162 ~l~V~~A 168 (168)
T 1b7f_A 162 PLSVRLA 168 (168)
T ss_dssp CCEEEEC
T ss_pred EEEEEeC
Confidence 9999985
No 6
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=4e-27 Score=234.55 Aligned_cols=151 Identities=26% Similarity=0.522 Sum_probs=142.0
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccC----C-------CeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKF----G-------ALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~Fskf----G-------~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I 86 (957)
+++++|||+|||.++|+++|+++|++| | .|.++.+++++|||||+|.+.++|.+|+ .+++..|.|+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 568999999999999999999999999 7 8888999999999999999999999999 999999999999
Q ss_pred cccccCCC---CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCce
Q 002168 87 KIEFARPA---KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQ 157 (957)
Q Consensus 87 ~V~~A~p~---~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~ 157 (957)
+|.++... ...++|||+|||..+++++|+++|++||.|..+.+.++ +|+|||+|.+.++|.+|++.|||..
T Consensus 81 ~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 81 KIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 160 (172)
T ss_dssp EEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE
T ss_pred eecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE
Confidence 99998754 34689999999999999999999999999999999988 4689999999999999999999999
Q ss_pred eCCeEEEEEEcc
Q 002168 158 IGGEQLRVDFLR 169 (957)
Q Consensus 158 i~Gr~I~V~~ak 169 (957)
++|+.|.|.|+.
T Consensus 161 ~~g~~l~V~~As 172 (172)
T 2g4b_A 161 LGDKKLLVQRAS 172 (172)
T ss_dssp ETTEECEEEECC
T ss_pred ECCeEEEEEeCC
Confidence 999999999873
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=1.1e-26 Score=239.81 Aligned_cols=155 Identities=23% Similarity=0.461 Sum_probs=142.0
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
.++++|||+|||.++|+++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 35789999999999999999999999999998883 457999999999999999999999999999999999887
Q ss_pred CCC--------------CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHH
Q 002168 92 RPA--------------KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALK 151 (957)
Q Consensus 92 ~p~--------------~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe 151 (957)
... ...++|||+||+.++++++|+++|++||.|..|++.++ +|+|||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 643 34589999999999999999999999999999999987 5789999999999999999
Q ss_pred HhCCceeCCeEEEEEEccCCc
Q 002168 152 NINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 152 ~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
.|||..|+|+.|+|.|+....
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCS
T ss_pred HccCCEeCCcEEEEEEecCCC
Confidence 999999999999999998764
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.94 E-value=6.5e-27 Score=230.89 Aligned_cols=150 Identities=29% Similarity=0.572 Sum_probs=138.0
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
++++|||+|||.++|+++|+++|+.||.|.+|+. ++++|||||+|.+.++|.+|++.+++..+.|+.|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4789999999999999999999999999998883 3456999999999999999999999999999999999997
Q ss_pred CCC---CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeE-
Q 002168 93 PAK---PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQ- 162 (957)
Q Consensus 93 p~~---~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~- 162 (957)
+.. ..++|||+|||..+++++|+++|++||.|..+++..+ +|+|||+|.+.++|.+|++.|||..+.|+.
T Consensus 81 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 160 (167)
T 1fxl_A 81 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATE 160 (167)
T ss_dssp CCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred CCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCcc
Confidence 644 4689999999999999999999999999999999887 378999999999999999999999999965
Q ss_pred -EEEEEc
Q 002168 163 -LRVDFL 168 (957)
Q Consensus 163 -I~V~~a 168 (957)
|+|.||
T Consensus 161 ~i~v~~A 167 (167)
T 1fxl_A 161 PITVKFA 167 (167)
T ss_dssp CCEEEEC
T ss_pred ceEEEeC
Confidence 888875
No 9
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=1.4e-26 Score=250.13 Aligned_cols=155 Identities=25% Similarity=0.502 Sum_probs=144.0
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHH----HHhccCCCeeEEE---ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLK----ELFGKFGALDKVT---TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~----e~FskfG~I~~V~---~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
.+.+++++|||+|||.++|+++|+ ++|++||.|.+|+ +++++|||||+|.+.++|.+|++.|+|..|.|+.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 346789999999999999999977 8999999999998 567899999999999999999999999999999999
Q ss_pred ccccCCCC------------------------------------------------------------------------
Q 002168 88 IEFARPAK------------------------------------------------------------------------ 95 (957)
Q Consensus 88 V~~A~p~~------------------------------------------------------------------------ 95 (957)
|.|++...
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 99886422
Q ss_pred ------------------------------------------CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC
Q 002168 96 ------------------------------------------PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG 133 (957)
Q Consensus 96 ------------------------------------------~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr 133 (957)
.+++|||+||+..+++++|+++|++||.|.+|+++.++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 34679999999999999999999999999999999887
Q ss_pred -CceEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEEcc
Q 002168 134 -NTAFVEYSRLEDAAEALKNINGRQIG-GEQLRVDFLR 169 (957)
Q Consensus 134 -G~AFVeF~t~edA~kAIe~LnG~~i~-Gr~I~V~~ak 169 (957)
|+|||+|.+.++|.+|++.|||..+. |+.|+|.|++
T Consensus 244 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 89999999999999999999999999 9999999986
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=5.7e-27 Score=238.74 Aligned_cols=154 Identities=26% Similarity=0.513 Sum_probs=142.7
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccC----C-------CeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKF----G-------ALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~Fskf----G-------~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I 86 (957)
+.+++|||+|||.++|+++|+++|++| | .|.++.+++++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 468999999999999999999999999 6 7888889999999999999999999999 899999999999
Q ss_pred cccccCCC-----------------------CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceE
Q 002168 87 KIEFARPA-----------------------KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAF 137 (957)
Q Consensus 87 ~V~~A~p~-----------------------~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AF 137 (957)
+|.++.+. ...++|||+|||..+++++|+++|++||.|.+|.+.++ +|+||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 99998643 35689999999999999999999999999999999987 47899
Q ss_pred EEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 138 VEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 138 VeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
|+|.+.++|.+|++.|||..++|+.|+|.|+..+.
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999997654
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=1.3e-26 Score=235.65 Aligned_cols=160 Identities=26% Similarity=0.428 Sum_probs=138.9
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I 86 (957)
...+..+.++|||+|||+++|+++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|+ .+++..|.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~l 84 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NARPHKVDGRVV 84 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH-HTCSCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHH-hcCCCEECCEEe
Confidence 3445678999999999999999999999999999998872 456899999999999999999 559999999999
Q ss_pred cccccCCCC---------CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHH
Q 002168 87 KIEFARPAK---------PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALK 151 (957)
Q Consensus 87 ~V~~A~p~~---------~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe 151 (957)
.|.++.+.. ..++|||+|||.++|+++|+++|+.||.|..|.++++ +|+|||+|.+.++|.+|++
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 999986432 3479999999999999999999999999999999987 4689999999999999997
Q ss_pred HhCCceeCCeEEEEEEccCCccc
Q 002168 152 NINGRQIGGEQLRVDFLRSQPSR 174 (957)
Q Consensus 152 ~LnG~~i~Gr~I~V~~ak~k~~r 174 (957)
. ++..++|+.|.|.|+..+...
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp C-SCCEETTEECEEEECC-----
T ss_pred h-CCcEECCEEEEEEecCChhHh
Confidence 6 799999999999999876543
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.94 E-value=3.7e-26 Score=227.52 Aligned_cols=150 Identities=27% Similarity=0.474 Sum_probs=135.0
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEec--------CCCcEEEEEeCCHHHHHHHHHHhcCCccc---cCccc
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY--------SSRSFAFVYFKRVEDAKAAKDALQGSDFR---GNPIK 87 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~g--------rskGyAFVeF~s~edA~~AL~~Lng~~I~---Gr~I~ 87 (957)
++++|||+|||+++|+++|+++|++||+|.+|+.. +++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999988721 67899999999999999999999998875 56777
Q ss_pred ccccCCCC----CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCcee
Q 002168 88 IEFARPAK----PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQI 158 (957)
Q Consensus 88 V~~A~p~~----~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i 158 (957)
+.++.+.. ..++|||+|||..+|+++|+++|++||.|.++++.++ +|+|||+|.+.++|.+|++.|||..+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 77765432 4689999999999999999999999999999999987 56899999999999999999999877
Q ss_pred C---CeEEEEEEc
Q 002168 159 G---GEQLRVDFL 168 (957)
Q Consensus 159 ~---Gr~I~V~~a 168 (957)
. ++.|.|.|+
T Consensus 162 ~~g~~~~l~V~~a 174 (175)
T 3nmr_A 162 MEGCSSPMVVKFA 174 (175)
T ss_dssp CTTCSSCCEEEEC
T ss_pred cCCCCCCeEEEec
Confidence 5 499999987
No 13
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=8.4e-26 Score=238.09 Aligned_cols=155 Identities=30% Similarity=0.512 Sum_probs=142.7
Q ss_pred CCCCCEEEEccCCC-CCcHHHHHHHhccCCCeeEEEecCC-CcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCC
Q 002168 17 APPSSNLWVGNLSA-DTTDADLKELFGKFGALDKVTTYSS-RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94 (957)
Q Consensus 17 ~~~s~tLfVgNLP~-svTE~dL~e~FskfG~I~~V~~grs-kGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~ 94 (957)
..++++|||+|||. ++++++|+++|++||.|.+|+..+. +|||||+|.+.++|.+|++.|++..|.|+.|+|.++++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 56789999999999 9999999999999999999995444 699999999999999999999999999999999998642
Q ss_pred --------------------------------------CCCCceEEcCCCccCCHHHHHHhhcccC-CEeEEEEee-cCC
Q 002168 95 --------------------------------------KPSKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLK-DGN 134 (957)
Q Consensus 95 --------------------------------------~~sr~LyVgNLP~~vTeedL~elFskfG-~I~~VkIlr-drG 134 (957)
.++++|||+|||..+++++|+++|++|| .|..|+++. ++|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g 190 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 190 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc
Confidence 1257899999999999999999999999 999999955 789
Q ss_pred ceEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEEccCC
Q 002168 135 TAFVEYSRLEDAAEALKNINGRQIG-GEQLRVDFLRSQ 171 (957)
Q Consensus 135 ~AFVeF~t~edA~kAIe~LnG~~i~-Gr~I~V~~ak~k 171 (957)
+|||+|.+.++|.+|++.|||..+. |+.|+|.|++.+
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999999999 999999998753
No 14
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.93 E-value=7.8e-26 Score=235.75 Aligned_cols=163 Identities=28% Similarity=0.429 Sum_probs=137.5
Q ss_pred cCCCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002168 91 ARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (957)
Q Consensus 91 A~p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~ 164 (957)
+.+..+.++|||+|||.++|+++|+++|++||.|.+|+|++++ |+|||+|.+.++|.+|++.+|+..+.|+.|+
T Consensus 9 ~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~ 88 (213)
T 4f02_A 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVR 88 (213)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccc
Confidence 3455678899999999999999999999999999999999873 6899999999999999999999999999999
Q ss_pred EEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHh
Q 002168 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMI 244 (957)
Q Consensus 165 V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs 244 (957)
+.++........ ...+.|||++++. .+++++|+++|+
T Consensus 89 ~~~~~~~~~~~~------------------------------------------~~~~~l~v~nl~~-~~t~~~l~~~F~ 125 (213)
T 4f02_A 89 IMWSQRDPSLRK------------------------------------------SGVGNIFIKNLDK-SIDNKALYDTFS 125 (213)
T ss_dssp EEECCCCTHHHH------------------------------------------HCTTEEEEESCCT-TCCHHHHHHHHG
T ss_pred cccccccccccc------------------------------------------cccccceECCccc-ccHHHHHHHHHh
Confidence 998765432111 0123466666663 699999999999
Q ss_pred hcCCeEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 245 LFGEIERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 245 ~fG~V~~VkI~~----srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
.||.|++|+|+. ++|||||+|.+.++|.+|++.|||..|+|++|+|.|++.+
T Consensus 126 ~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 126 AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp GGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred hcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 999999999974 4789999999999999999999999999999999998653
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.93 E-value=2e-26 Score=228.35 Aligned_cols=151 Identities=25% Similarity=0.444 Sum_probs=137.5
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
+++++|||+|||.++|+++|+++|++||.|.+|+ +++++|||||+|.+.++|.+|++ ++..+.|+.|.+.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccc
Confidence 4679999999999999999999999999999998 35678999999999999999996 367899999999998
Q ss_pred CCC---CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeE
Q 002168 92 RPA---KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (957)
Q Consensus 92 ~p~---~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~ 162 (957)
.+. ...++|||+|||..+++++|+++|++||.|.++++..++ |+|||+|.+.++|.+|++ +++..++|+.
T Consensus 79 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 157 (167)
T 2cjk_A 79 IPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRK 157 (167)
T ss_dssp CCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSC
T ss_pred cchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeE
Confidence 653 246799999999999999999999999999999998773 689999999999999997 8999999999
Q ss_pred EEEEEccCC
Q 002168 163 LRVDFLRSQ 171 (957)
Q Consensus 163 I~V~~ak~k 171 (957)
|.|.|+..+
T Consensus 158 i~V~~a~pk 166 (167)
T 2cjk_A 158 IEIKRAEPR 166 (167)
T ss_dssp EEEEECCCC
T ss_pred EEEeecCCC
Confidence 999998754
No 16
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.8e-25 Score=218.90 Aligned_cols=154 Identities=29% Similarity=0.451 Sum_probs=137.0
Q ss_pred CceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC-----CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG-----NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr-----G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
++|||+|||.++|+++|+++|++||.|.+|++++++ |+|||+|.+.++|.+|++.|+|..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 589999999999999999999999999999998774 689999999999999999999999999999999986543
Q ss_pred cccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEE
Q 002168 173 SRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERI 252 (957)
Q Consensus 173 ~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~V 252 (957)
.. .....+.++|++++. .+++++|+++|+.||.|.++
T Consensus 81 ~~------------------------------------------~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~i~~~ 117 (166)
T 3md3_A 81 QS------------------------------------------SSDDTFNLFVGDLNV-NVDDETLRNAFKDFPSYLSG 117 (166)
T ss_dssp CC------------------------------------------CCTTCEEEEEESCCT-TCCHHHHHHHHTTSTTEEEE
T ss_pred CC------------------------------------------CCCCCceEEECCCCC-CCCHHHHHHHHhccCCeeEE
Confidence 10 222356677777664 69999999999999999999
Q ss_pred EEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 002168 253 KSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 294 (957)
Q Consensus 253 kI~~s------rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~ 294 (957)
++..+ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|++
T Consensus 118 ~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 118 HVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 99743 6899999999999999999999999999999999986
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=8.3e-26 Score=231.31 Aligned_cols=153 Identities=31% Similarity=0.517 Sum_probs=140.6
Q ss_pred CCCEEEEccCCC-CCcHHHHHHHhccCCCeeEEEecCC-CcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCC--
Q 002168 19 PSSNLWVGNLSA-DTTDADLKELFGKFGALDKVTTYSS-RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA-- 94 (957)
Q Consensus 19 ~s~tLfVgNLP~-svTE~dL~e~FskfG~I~~V~~grs-kGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~-- 94 (957)
.+++|||+|||. ++++++|+++|++||.|.+|+..+. +|||||+|.+.++|.+|++.|+|..|.|+.|+|.+++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 368999999999 9999999999999999999995443 799999999999999999999999999999999988632
Q ss_pred ------------------------------------CCCCceEEcCCCccCCHHHHHHhhcccC-CEeEEEEee-cCCce
Q 002168 95 ------------------------------------KPSKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLK-DGNTA 136 (957)
Q Consensus 95 ------------------------------------~~sr~LyVgNLP~~vTeedL~elFskfG-~I~~VkIlr-drG~A 136 (957)
.++++|||+|||..+++++|+++|++|| .|..|+++. ++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 2267899999999999999999999999 999999965 68999
Q ss_pred EEEeCCHHHHHHHHHHhCCceeC-CeEEEEEEccCC
Q 002168 137 FVEYSRLEDAAEALKNINGRQIG-GEQLRVDFLRSQ 171 (957)
Q Consensus 137 FVeF~t~edA~kAIe~LnG~~i~-Gr~I~V~~ak~k 171 (957)
||+|.+.++|.+|++.|||..++ |+.|+|.|++.+
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999998753
No 18
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=1.1e-25 Score=225.34 Aligned_cols=155 Identities=27% Similarity=0.404 Sum_probs=138.8
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCC-----eeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGA-----LDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~-----I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
.+..+.++|||+|||.++|+++|+++|..||. |.+..+++++|||||+|.+.++|.+|+ +|++..|.|+.|+|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 34678999999999999999999999999975 345568899999999999999999999 699999999999999
Q ss_pred ccCCCC-----CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEe--ecCCceEEEeCCHHHHHHHHHHhCCceeCCeE
Q 002168 90 FARPAK-----PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL--KDGNTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (957)
Q Consensus 90 ~A~p~~-----~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIl--rdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~ 162 (957)
++.+.. ..++|||+|||..+++++|+++|++||.|..+ .. +.+|+|||+|.+.++|.+|++.|||..+.|+.
T Consensus 87 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 87 KPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred cCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 997533 35799999999999999999999999988877 11 22689999999999999999999999999999
Q ss_pred EEEEEccCC
Q 002168 163 LRVDFLRSQ 171 (957)
Q Consensus 163 I~V~~ak~k 171 (957)
|+|.|+..+
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999764
No 19
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.93 E-value=5.1e-25 Score=218.18 Aligned_cols=153 Identities=22% Similarity=0.373 Sum_probs=136.0
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
++++|||+|||.++++++|+++|+.||.|.+|++++++ |+|||+|.+.++|.+|++.|+|..+.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999998773 789999999999999999999999999999999986
Q ss_pred CCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCe
Q 002168 170 SQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEI 249 (957)
Q Consensus 170 ~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V 249 (957)
... .....+.++|++++. .+++++|+++|++||.|
T Consensus 82 ~~~--------------------------------------------~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~i 116 (168)
T 1b7f_A 82 PGG--------------------------------------------ESIKDTNLYVTNLPR-TITDDQLDTIFGKYGSI 116 (168)
T ss_dssp CCS--------------------------------------------STTTTCEEEEESCCT-TCCHHHHHHHHTSSSCE
T ss_pred CCc--------------------------------------------ccCCCCCEEEeCCCC-CCCHHHHHHhhhcCCcE
Confidence 442 112245666766664 69999999999999999
Q ss_pred EEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCC--CeEEEEee
Q 002168 250 ERIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFND--PRITIMFS 293 (957)
Q Consensus 250 ~~VkI~~s------rG~AFVeF~T~edA~~AIe~LNGk~f~G--r~I~V~~A 293 (957)
..+++.++ +|||||+|.+.++|.+|++.|||..|.| ++|+|.||
T Consensus 117 ~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 117 VQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99999754 4899999999999999999999999988 99999986
No 20
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.93 E-value=5.3e-25 Score=217.19 Aligned_cols=152 Identities=26% Similarity=0.433 Sum_probs=134.0
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
+++|||+|||.++++++|+++|+.||.|.++++++++ |+|||+|.+.++|.+|++.|+|..+.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999999886 7899999999999999999999999999999999864
Q ss_pred CccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeE
Q 002168 171 QPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIE 250 (957)
Q Consensus 171 k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~ 250 (957)
... ....+.++|++++. .+++++|+++|+.||.|.
T Consensus 82 ~~~--------------------------------------------~~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~i~ 116 (167)
T 1fxl_A 82 SSA--------------------------------------------SIRDANLYVSGLPK-TMTQKELEQLFSQYGRII 116 (167)
T ss_dssp CCG--------------------------------------------GGTTCEEEEESCCT-TCCHHHHHHHHGGGSCEE
T ss_pred Ccc--------------------------------------------cCCCCcEEECCCCC-cCCHHHHHHHHHhcCCEe
Confidence 421 11134466666663 599999999999999999
Q ss_pred EEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCCe--EEEEee
Q 002168 251 RIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPR--ITIMFS 293 (957)
Q Consensus 251 ~VkI~~s------rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~--I~V~~A 293 (957)
++++..+ +|||||+|.+.++|.+|++.|||..|.|+. |+|.||
T Consensus 117 ~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 117 TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9998743 689999999999999999999999999964 888886
No 21
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=8.1e-25 Score=230.54 Aligned_cols=193 Identities=19% Similarity=0.256 Sum_probs=147.3
Q ss_pred CCCCCceEEcCCCc-cCCHHHHHHhhcccCCEeEEEEeecC-CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 94 AKPSKHLWVGGISQ-TVSKEELEEGFLKFGNIEDFKFLKDG-NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 94 ~~~sr~LyVgNLP~-~vTeedL~elFskfG~I~~VkIlrdr-G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
...+++|||+|||. ++++++|+++|++||.|.+|++++++ |+|||+|.+.++|.+|++.|+|..+.|+.|.|.+++..
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 45689999999999 99999999999999999999999884 99999999999999999999999999999999998765
Q ss_pred ccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcC-CeE
Q 002168 172 PSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFG-EIE 250 (957)
Q Consensus 172 ~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG-~V~ 250 (957)
.................+. ....... .............++++|+|++++. .+++++|+++|+.|| .|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~~~~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~~i~ 180 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYG---NSPLHRF------KKPGSKNFQNIFPPSATLHLSNIPP-SVSEEDLKVLFSSNGGVVK 180 (229)
T ss_dssp CCCCCCSSSSTTTTEEECT---TCSSCCC------CSTTSGGGTTCCCSCSEEEEECCCT-TCCHHHHHHHHHTTSCCEE
T ss_pred cccCccccccccccccccc---cCccccc------CCccccccccCCCCCCEEEEeCCCc-cCCHHHHHHHHHHcCCCee
Confidence 3211110000000000000 0000000 0000001111234567778877774 699999999999999 999
Q ss_pred EEEEeC-CCcEEEEEeCCHHHHHHHHHHhCCCeeC-CCeEEEEeecCC
Q 002168 251 RIKSYP-SRNYSFVEFRSVDEARRAKEGLQGRLFN-DPRITIMFSSSE 296 (957)
Q Consensus 251 ~VkI~~-srG~AFVeF~T~edA~~AIe~LNGk~f~-Gr~I~V~~A~~~ 296 (957)
.|++++ ++|||||+|.+.++|.+|++.|||..|. |+.|+|.|++++
T Consensus 181 ~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 181 GFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999964 8999999999999999999999999999 999999999764
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=1.6e-25 Score=233.33 Aligned_cols=151 Identities=19% Similarity=0.211 Sum_probs=135.2
Q ss_pred CCCCEEEEccCC-CCCcHHHHHHHhccCCCeeEEEec-CCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCC-
Q 002168 18 PPSSNLWVGNLS-ADTTDADLKELFGKFGALDKVTTY-SSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA- 94 (957)
Q Consensus 18 ~~s~tLfVgNLP-~svTE~dL~e~FskfG~I~~V~~g-rskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~- 94 (957)
.++++|||+||| ..+|+++|+++|++||.|.+|++. ..+|||||+|.+.++|.+|++.|||..|.|+.|+|.+++..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 468999999999 899999999999999999999854 46899999999999999999999999999999999987521
Q ss_pred ---------------------------------------CCCCceEEcCCCccCCHHHHHHhhcccCCE--eEEEEeec-
Q 002168 95 ---------------------------------------KPSKHLWVGGISQTVSKEELEEGFLKFGNI--EDFKFLKD- 132 (957)
Q Consensus 95 ---------------------------------------~~sr~LyVgNLP~~vTeedL~elFskfG~I--~~VkIlrd- 132 (957)
.++++|||+|||.++|+++|+++|++||.| .++++..+
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 123479999999999999999999999998 89999876
Q ss_pred ---CCceEEEeCCHHHHHHHHHHhCCceeCCe----EEEEEEc
Q 002168 133 ---GNTAFVEYSRLEDAAEALKNINGRQIGGE----QLRVDFL 168 (957)
Q Consensus 133 ---rG~AFVeF~t~edA~kAIe~LnG~~i~Gr----~I~V~~a 168 (957)
+|+|||+|.+.++|.+||..|||..+.|+ .+.|+++
T Consensus 162 ~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 162 SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 36899999999999999999999999875 5666654
No 23
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=6.7e-25 Score=224.56 Aligned_cols=190 Identities=19% Similarity=0.263 Sum_probs=146.2
Q ss_pred CCceEEcCCCc-cCCHHHHHHhhcccCCEeEEEEeec-CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccc
Q 002168 97 SKHLWVGGISQ-TVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174 (957)
Q Consensus 97 sr~LyVgNLP~-~vTeedL~elFskfG~I~~VkIlrd-rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~r 174 (957)
+++|||+|||. .+++++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+|++.|||..+.|+.|.|.++......
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 82 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 82 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcC
Confidence 68999999999 9999999999999999999999988 489999999999999999999999999999999998765422
Q ss_pred cCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcC-CeEEEE
Q 002168 175 REQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFG-EIERIK 253 (957)
Q Consensus 175 r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG-~V~~Vk 253 (957)
..............+. ....... .............++++|+|++++. .+++++|+++|+.|| .|.+++
T Consensus 83 ~~~~~~~~~~~~~~~~---~~~~~r~------~~~~~~~~~~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~~v~~v~ 152 (198)
T 1qm9_A 83 LPREGQEDQGLTKDYG---NSPLHRF------KKPGSKNFQNIFPPSATLHLSNIPP-SVSEEDLKVLFSSNGGVVKGFK 152 (198)
T ss_dssp CSSSSSSSSSCEEESS---CCCTTSS------SSCCCCCCSCCCCCCCEEEECCCCT-TCCHHHHHHHHHHTTSCCCEEE
T ss_pred CCCcCCcccccccccc---CCchhhc------cCccccccccCCCCccEEEEeCCCC-CCCHHHHHHHHHHcCCCceEEE
Confidence 1110000000000000 0000000 0000011112334678888888775 699999999999999 999999
Q ss_pred EeC-CCcEEEEEeCCHHHHHHHHHHhCCCeeC-CCeEEEEeecCC
Q 002168 254 SYP-SRNYSFVEFRSVDEARRAKEGLQGRLFN-DPRITIMFSSSE 296 (957)
Q Consensus 254 I~~-srG~AFVeF~T~edA~~AIe~LNGk~f~-Gr~I~V~~A~~~ 296 (957)
+++ ++|+|||+|.+.++|.+|++.|||+.|+ |+.|+|.|++++
T Consensus 153 i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 153 FFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp ESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 964 7899999999999999999999999999 999999999764
No 24
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=3.7e-25 Score=237.83 Aligned_cols=157 Identities=30% Similarity=0.467 Sum_probs=144.7
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
.+.....+++|||+|||.++|+++|+++|++||.|.+|++.+++|||||+|.+.++|.+|++.++|..|.|+.|+|.++.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp TCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 34446788999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhC-CceeC---CeEE
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNIN-GRQIG---GEQL 163 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~Ln-G~~i~---Gr~I 163 (957)
..++|||+|||..+|+++|+++|+.||.|.+|.++.+ +|+|||+|.+.++|.+|++.|| +..+. ++.|
T Consensus 95 ---~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 95 ---HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPV 171 (261)
T ss_dssp ---CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBC
T ss_pred ---cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceE
Confidence 4689999999999999999999999999999999987 5789999999999999999994 55554 9999
Q ss_pred EEEEccCCc
Q 002168 164 RVDFLRSQP 172 (957)
Q Consensus 164 ~V~~ak~k~ 172 (957)
.|.++....
T Consensus 172 ~v~~~~~~~ 180 (261)
T 3sde_A 172 IVEPMEQFD 180 (261)
T ss_dssp EEEECCCEE
T ss_pred EEeeccccC
Confidence 999987653
No 25
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.93 E-value=2.9e-24 Score=231.92 Aligned_cols=200 Identities=22% Similarity=0.394 Sum_probs=146.0
Q ss_pred CCCCCceEEcCCCccCCHHHHH----HhhcccCCEeEEEEeec---CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELE----EGFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~----elFskfG~I~~VkIlrd---rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
...+++|||+||+.++++++|+ ++|++||.|.+|++.++ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4668999999999999999976 99999999999998874 6899999999999999999999999999999999
Q ss_pred EccCCccccCCCCCCCCCCC-----------------------CCccCCCCCCCC-------------------------
Q 002168 167 FLRSQPSRREQWPNSHDARD-----------------------GPIIGRGTGFSD------------------------- 198 (957)
Q Consensus 167 ~ak~k~~rr~~~~~~~~~r~-----------------------~~~~~~~~~~~~------------------------- 198 (957)
|++.+.............+. ..........+.
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 99765421100000000000 000000000000
Q ss_pred --------Ccc-----------cccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCCC-
Q 002168 199 --------NHS-----------AYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSR- 258 (957)
Q Consensus 199 --------~~~-----------~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~sr- 258 (957)
... ..................++++|||++++. .+++++|+++|++||.|.+|++++++
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~-~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPE-ETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCC-cCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 000 000000000001122445677888888875 79999999999999999999999776
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCeeC-CCeEEEEeec
Q 002168 259 NYSFVEFRSVDEARRAKEGLQGRLFN-DPRITIMFSS 294 (957)
Q Consensus 259 G~AFVeF~T~edA~~AIe~LNGk~f~-Gr~I~V~~A~ 294 (957)
|||||+|.+.++|.+|++.|||..|. |+.|+|.|++
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99999999999999999999999999 9999999986
No 26
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.92 E-value=8.2e-25 Score=217.82 Aligned_cols=153 Identities=20% Similarity=0.434 Sum_probs=135.1
Q ss_pred CCCceEEcCCCccCCHHHHHHhhccc----C-------CEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKF----G-------NIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskf----G-------~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~ 164 (957)
..++|||+|||.++|+++|+++|++| | .|.++++.+++|+|||+|.+.++|.+|+ .+|+..+.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46899999999999999999999999 7 8999999999999999999999999999 8999999999999
Q ss_pred EEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHh
Q 002168 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMI 244 (957)
Q Consensus 165 V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs 244 (957)
|.++.... .....+.++|++++. .+++++|+++|+
T Consensus 82 v~~~~~~~--------------------------------------------~~~~~~~l~v~nlp~-~~t~~~l~~~f~ 116 (172)
T 2g4b_A 82 IRRPHDYQ--------------------------------------------PLPGAHKLFIGGLPN-YLNDDQVKELLT 116 (172)
T ss_dssp EECCSSCC--------------------------------------------CCTTTTCEEEECCCT-TCCHHHHHHHHH
T ss_pred ecCCcccC--------------------------------------------CCCCCCEEEEEcCCC-cCCHHHHHHHHH
Confidence 99764332 001145566666663 599999999999
Q ss_pred hcCCeEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 002168 245 LFGEIERIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 294 (957)
Q Consensus 245 ~fG~V~~VkI~~s------rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~ 294 (957)
+||.|.++++..+ +|||||+|.+.++|.+|++.|||..|+|+.|.|.||.
T Consensus 117 ~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 117 SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred hcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999754 6899999999999999999999999999999999974
No 27
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.92 E-value=2.8e-25 Score=229.29 Aligned_cols=170 Identities=18% Similarity=0.298 Sum_probs=140.9
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
..++|||+|||.++|+++|+++|+.||.|.+|+++++ +|+|||+|.+.++|.+|++.||+..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4679999999999999999999999999999999865 5799999999999999999999999999999998876
Q ss_pred CCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCe
Q 002168 170 SQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEI 249 (957)
Q Consensus 170 ~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V 249 (957)
.......... .........++|||++++. .+++++|+++|+.||.|
T Consensus 107 ~~~~~~~~~~---------------------------------~~~~~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~G~v 152 (216)
T 2qfj_A 107 NIGQAQPIID---------------------------------QLAEEARAFNRIYVASVHQ-DLSDDDIKSVFEAFGKI 152 (216)
T ss_dssp CCGGGHHHHH---------------------------------HHHHHHTTSCEEEEECCCT-TCCHHHHHHHHTTSSCE
T ss_pred Cccccchhhh---------------------------------hhhcccCCCcEEEEeCCCC-cCCHHHHHHHHhccCCe
Confidence 5432110000 0000112346677777664 69999999999999999
Q ss_pred EEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCCC
Q 002168 250 ERIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 299 (957)
Q Consensus 250 ~~VkI~~s------rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~~p 299 (957)
++|++..+ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|+..+..+
T Consensus 153 ~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 153 KSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred eEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 99999754 689999999999999999999999999999999999776443
No 28
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.92 E-value=2.5e-24 Score=219.21 Aligned_cols=176 Identities=18% Similarity=0.333 Sum_probs=142.0
Q ss_pred CCCceEEcCCCccCCHHHHHHhhccc----C-------CEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKF----G-------NIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskf----G-------~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~ 164 (957)
.+++|||+|||.++|+++|+++|++| | .|.++.+.+++|+|||+|.+.++|.+|+ .|||..+.|+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46899999999999999999999999 6 7889999999999999999999999999 8999999999999
Q ss_pred EEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHh
Q 002168 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMI 244 (957)
Q Consensus 165 V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs 244 (957)
|.++............ .. ...............+.|+|++++. .+++++|+++|+
T Consensus 82 v~~~~~~~~~~~~~~~----~~--------------------~~~~~~~~~~~~~~~~~l~v~nl~~-~~~~~~l~~~f~ 136 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSEN----PS--------------------VYVPGVVSTVVPDSAHKLFIGGLPN-YLNDDQVKELLT 136 (198)
T ss_dssp EECCCCCCCCCCSSSC----SS--------------------CCCTTSSCCCSSCCCCEEEEECCCT-TCCHHHHHHHHH
T ss_pred EeCCCCCCCCCCCcCC----Cc--------------------CCCCCCccCCCCCCCCEEEEeCCCC-CCCHHHHHHHHH
Confidence 9988754321110000 00 0000001111234556777777764 699999999999
Q ss_pred hcCCeEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 002168 245 LFGEIERIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 297 (957)
Q Consensus 245 ~fG~V~~VkI~~s------rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~ 297 (957)
+||.|.++++..+ +|||||+|.+.++|.+|++.|||..|+|+.|.|.|++.+.
T Consensus 137 ~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 137 SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp TBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999754 6899999999999999999999999999999999997653
No 29
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=9.3e-25 Score=236.06 Aligned_cols=157 Identities=24% Similarity=0.368 Sum_probs=144.5
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
...++|||+|||.++|+++|+++|++||.|.+|+ +++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4578999999999999999999999999999886 3456899999999999999999999999999999999998
Q ss_pred CCC------CCCCceEEcCCCccC-CHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeC
Q 002168 92 RPA------KPSKHLWVGGISQTV-SKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIG 159 (957)
Q Consensus 92 ~p~------~~sr~LyVgNLP~~v-TeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~ 159 (957)
.+. ...++|||+|||..+ ++++|+++|+.||.|.++++.++ +|+|||+|.+.++|.+|++.|||..++
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 753 346899999999996 99999999999999999999987 678999999999999999999999999
Q ss_pred CeEEEEEEccCCccc
Q 002168 160 GEQLRVDFLRSQPSR 174 (957)
Q Consensus 160 Gr~I~V~~ak~k~~r 174 (957)
|+.|.|.|+..+..+
T Consensus 253 g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 253 GSHLRVSFCAPGPPG 267 (284)
T ss_dssp TEECEEEECCSSSCH
T ss_pred CeEEEEEEecCCCcc
Confidence 999999999877643
No 30
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=6.8e-24 Score=221.02 Aligned_cols=190 Identities=21% Similarity=0.271 Sum_probs=139.4
Q ss_pred CCCceEEcCCC-ccCCHHHHHHhhcccCCEeEEEEeec-CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcc
Q 002168 96 PSKHLWVGGIS-QTVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPS 173 (957)
Q Consensus 96 ~sr~LyVgNLP-~~vTeedL~elFskfG~I~~VkIlrd-rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~ 173 (957)
.+++|||+||+ ..+++++|+++|+.||.|.+|+++++ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.+++.+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 89999999999999999999999986 69999999999999999999999999999999999976542
Q ss_pred ccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCe--EE
Q 002168 174 RREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEI--ER 251 (957)
Q Consensus 174 rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V--~~ 251 (957)
..... . .......... ..... ...+-.............++++|+|+|++. .++|++|+++|+.||.| .+
T Consensus 83 ~p~~~--~-~~~~~~~~~~--~~~~~--~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~-~~t~~~L~~~F~~~G~v~~~~ 154 (205)
T 3tyt_A 83 MPGQS--Y-GLEDGSCSYK--DFSES--RNNRFSTPEQAAKNRIQHPSNVLHFFNAPL-EVTEENFFEICDELGVKRPTS 154 (205)
T ss_dssp CCCSC--C-BCTTSCBSEE--ECTTC--TTCSCSSHHHHTTSCCCCCCSEEEEEEECT-TCCHHHHHHHHHHHTCCCCSE
T ss_pred CCCcc--c-ccccCCcccc--ccCCC--ccccccCcccccccccCCCcceEEEeCCCC-CCCHHHHHHHHHhcCCcceEE
Confidence 11000 0 0000000000 00000 000000000000111235667788877774 69999999999999999 89
Q ss_pred EEEeCC----CcEEEEEeCCHHHHHHHHHHhCCCeeCCC----eEEEEee
Q 002168 252 IKSYPS----RNYSFVEFRSVDEARRAKEGLQGRLFNDP----RITIMFS 293 (957)
Q Consensus 252 VkI~~s----rG~AFVeF~T~edA~~AIe~LNGk~f~Gr----~I~V~~A 293 (957)
++++.+ +|+|||+|.+.++|.+|+..|||..|.|+ ++.|.|+
T Consensus 155 v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 155 VKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999854 48999999999999999999999999987 4666654
No 31
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.91 E-value=3.3e-24 Score=217.91 Aligned_cols=165 Identities=20% Similarity=0.340 Sum_probs=134.1
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||.++|+++|+++|+.||.|.+|+++++ +|+|||+|.+.++|.+|++. ++..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 345789999999999999999999999999999999987 36899999999999999976 89999999999999
Q ss_pred ccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcC
Q 002168 168 LRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFG 247 (957)
Q Consensus 168 ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG 247 (957)
+......... ......+.|||++++. .+++++|+++|+.||
T Consensus 89 ~~~~~~~~~~--------------------------------------~~~~~~~~l~V~nLp~-~~t~~~l~~~F~~~G 129 (196)
T 1l3k_A 89 AVSREDSQRP--------------------------------------GAHLTVKKIFVGGIKE-DTEEHHLRDYFEQYG 129 (196)
T ss_dssp CCC-------------------------------------------------CCSEEEEECCTT-TCCHHHHHHHHTTTS
T ss_pred ccCccccccc--------------------------------------ccCCCcceEEEeCCCC-CCCHHHHHHHHhcCC
Confidence 8654311100 0122345667776664 699999999999999
Q ss_pred CeEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCCC
Q 002168 248 EIERIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 299 (957)
Q Consensus 248 ~V~~VkI~~s------rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~~p 299 (957)
.|..|++..+ +|||||+|.+.++|.+|++. +|..|+|+.|.|.|+..+...
T Consensus 130 ~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 130 KIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred CeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 9999999743 68999999999999999986 899999999999999766443
No 32
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.91 E-value=5.5e-24 Score=211.83 Aligned_cols=155 Identities=19% Similarity=0.350 Sum_probs=131.9
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec--------CCceEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD--------GNTAFVEYSRLEDAAEALKNINGRQIG---GEQLR 164 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd--------rG~AFVeF~t~edA~kAIe~LnG~~i~---Gr~I~ 164 (957)
.+++|||+|||.++|+++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4679999999999999999999999999999999865 468999999999999999999998775 57777
Q ss_pred EEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHh
Q 002168 165 VDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMI 244 (957)
Q Consensus 165 V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs 244 (957)
+.++..... .....+.|+|++++. .+++++|+++|+
T Consensus 82 ~~~~~~~~~-------------------------------------------~~~~~~~l~v~nl~~-~~t~~~l~~~F~ 117 (175)
T 3nmr_A 82 MKPADSEKN-------------------------------------------NAVEDRKLFIGMISK-KCTENDIRVMFS 117 (175)
T ss_dssp EEECGGGCC-------------------------------------------SCGGGSEEEEESCCT-TCCHHHHHHHHG
T ss_pred Ecccccccc-------------------------------------------ccCCCCeEEEcCCCC-cCCHHHHHHHHH
Confidence 777654321 111245577766664 699999999999
Q ss_pred hcCCeEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCCeeC---CCeEEEEeec
Q 002168 245 LFGEIERIKSYPS-----RNYSFVEFRSVDEARRAKEGLQGRLFN---DPRITIMFSS 294 (957)
Q Consensus 245 ~fG~V~~VkI~~s-----rG~AFVeF~T~edA~~AIe~LNGk~f~---Gr~I~V~~A~ 294 (957)
+||.|.++++.++ +|||||+|.+.++|.+|++.|||..+. |+.|+|.||.
T Consensus 118 ~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 118 SFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp GGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred hCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999754 789999999999999999999999876 4999999973
No 33
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.91 E-value=5.8e-24 Score=230.74 Aligned_cols=153 Identities=21% Similarity=0.425 Sum_probs=139.3
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCC-CeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFG-ALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG-~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
...++|||+|||.++++++|+++|+.|| .|..|.. ++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3689999999999999999999999999 9998883 457899999999999999999999999999999999998
Q ss_pred CCCC----------CCCceEEcCCCcc-CCHHHHHHhhcccCCEeEEEEeec-------CCceEEEeCCHHHHHHHHHHh
Q 002168 92 RPAK----------PSKHLWVGGISQT-VSKEELEEGFLKFGNIEDFKFLKD-------GNTAFVEYSRLEDAAEALKNI 153 (957)
Q Consensus 92 ~p~~----------~sr~LyVgNLP~~-vTeedL~elFskfG~I~~VkIlrd-------rG~AFVeF~t~edA~kAIe~L 153 (957)
.+.. ..++|||+|||.. +++++|+++|+.||.|..|++.++ +|+|||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 6532 3579999999999 999999999999999999999875 468999999999999999 99
Q ss_pred CCceeCCeEEEEEEccCC
Q 002168 154 NGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 154 nG~~i~Gr~I~V~~ak~k 171 (957)
||..|+|+.|.|.|+..+
T Consensus 274 ~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTEEETTEEEEEEECCCC
T ss_pred cCCEECCcEEEEEEecCC
Confidence 999999999999999765
No 34
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.90 E-value=3.9e-24 Score=211.93 Aligned_cols=153 Identities=20% Similarity=0.351 Sum_probs=132.6
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
++++|||+|||.++|+++|+++|+.||.|.+|+++++ +|+|||+|.+.++|.+|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 4689999999999999999999999999999999877 37999999999999999984 678999999998875
Q ss_pred CCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCe
Q 002168 170 SQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEI 249 (957)
Q Consensus 170 ~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V 249 (957)
..... ...+.|+|++++. .+++++|+++|+.||.|
T Consensus 80 ~~~~~--------------------------------------------~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i 114 (167)
T 2cjk_A 80 PRDEQ--------------------------------------------DKTGKIFVGGIGP-DVRPKEFEEFFSQWGTI 114 (167)
T ss_dssp CHHHH--------------------------------------------HHCEEEEEEEECT-TCCHHHHHHHHHTTSCC
T ss_pred chhhc--------------------------------------------cCCCeEEECCCCC-CCCHHHHHHHHHhCccE
Confidence 43211 1234566666663 69999999999999999
Q ss_pred EEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 250 ERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 250 ~~VkI~~------srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
.++++.. ++|||||+|.+.++|.+|++ |||..|+|+.|+|.|+.++
T Consensus 115 ~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 115 IDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999874 36899999999999999998 8999999999999999764
No 35
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.90 E-value=3.6e-23 Score=207.05 Aligned_cols=160 Identities=17% Similarity=0.296 Sum_probs=134.1
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEe-----EEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIE-----DFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~-----~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
.....++|||+|||.++++++|+++|+.||.|. +...-+.+|+|||+|.+.++|.+|+ .|||..+.|+.|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 456788999999999999999999999998543 3333445799999999999999999 5999999999999998
Q ss_pred ccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcC
Q 002168 168 LRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFG 247 (957)
Q Consensus 168 ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG 247 (957)
+...... .....+.|+|++++. .+++++|+++|+.||
T Consensus 88 ~~~~~~~------------------------------------------~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~g 124 (175)
T 1fje_B 88 PKGRDSK------------------------------------------KVRAARTLLAKNLSF-NITEDELKEVFEDAL 124 (175)
T ss_dssp CCCSSCS------------------------------------------TTGGGGEEEEESCCS-SCCHHHHHHHCTTCS
T ss_pred CCCcccc------------------------------------------ccccCCEEEEeCCCC-CCCHHHHHHHHHhcC
Confidence 8654211 112356777777764 699999999999999
Q ss_pred CeEEEEE-eCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 248 EIERIKS-YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 248 ~V~~VkI-~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
.|..+.. ..++|||||+|.+.++|.+|++.|||..|+|+.|+|.|++.+
T Consensus 125 ~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 125 EIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred eEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 9988811 246899999999999999999999999999999999999754
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.88 E-value=3e-22 Score=215.14 Aligned_cols=151 Identities=20% Similarity=0.306 Sum_probs=134.3
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~r 174 (957)
...++|||+|||.++|+++|+++|+.||.|.+|++.+++|+|||+|.+.++|.+|++.|||..+.|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~---- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH---- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC----
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc----
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999998642
Q ss_pred cCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEE
Q 002168 175 REQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKS 254 (957)
Q Consensus 175 r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI 254 (957)
.+.|+|++++. .+++++|+++|+.||.|.+|++
T Consensus 96 ----------------------------------------------~~~l~v~nl~~-~~t~~~l~~~F~~~G~i~~v~i 128 (261)
T 3sde_A 96 ----------------------------------------------GAALTVKNLSP-VVSNELLEQAFSQFGPVEKAVV 128 (261)
T ss_dssp ----------------------------------------------SSEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEE
T ss_pred ----------------------------------------------CCcccccCCCC-CCCHHHHHHHHHhcCCeEEEEe
Confidence 23466666663 6999999999999999999999
Q ss_pred eC-----CCcEEEEEeCCHHHHHHHHHHhC-CCeeC---CCeEEEEeecCC
Q 002168 255 YP-----SRNYSFVEFRSVDEARRAKEGLQ-GRLFN---DPRITIMFSSSE 296 (957)
Q Consensus 255 ~~-----srG~AFVeF~T~edA~~AIe~LN-Gk~f~---Gr~I~V~~A~~~ 296 (957)
+. ++|||||+|.+.++|.+|++.|| |..+. |+.|.|.++...
T Consensus 129 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 129 VVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred eeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 74 37899999999999999999995 55554 999999998654
No 37
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=6.7e-18 Score=166.41 Aligned_cols=119 Identities=20% Similarity=0.312 Sum_probs=109.7
Q ss_pred cCCCcEEEEEeCCHHHHHHHHHHh-cCCccccCcccccccCC-------------------CCCCCceEEcCCCccCCHH
Q 002168 53 YSSRSFAFVYFKRVEDAKAAKDAL-QGSDFRGNPIKIEFARP-------------------AKPSKHLWVGGISQTVSKE 112 (957)
Q Consensus 53 grskGyAFVeF~s~edA~~AL~~L-ng~~I~Gr~I~V~~A~p-------------------~~~sr~LyVgNLP~~vTee 112 (957)
.+-+|+++|+|.+.++|.+|++.+ |+..+.| .|.+.++.. ....++|||+|||..++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 456899999999999999999999 9999999 999988753 2346899999999999999
Q ss_pred HHHHhhcccCCEeEEEEeec-CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 113 ELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 113 dL~elFskfG~I~~VkIlrd-rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
+|+++|++||.|.+|++.++ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.|++.++
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999998 8999999999999999999999999999999999987653
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.70 E-value=1.1e-17 Score=158.01 Aligned_cols=95 Identities=18% Similarity=0.343 Sum_probs=69.4
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCC
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTT----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~ 94 (957)
.+++|||+|||+++|+++|+++|++||.|.+|++ +.++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.+.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4678999999999999999999999999998872 346899999999999999999999999999999999998753
Q ss_pred C-----------CCCceEEcCCCccCCHHH
Q 002168 95 K-----------PSKHLWVGGISQTVSKEE 113 (957)
Q Consensus 95 ~-----------~sr~LyVgNLP~~vTeed 113 (957)
. ...+|||+||++++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 2 235799999999999864
No 39
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=3.1e-17 Score=162.55 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=99.9
Q ss_pred cCCCcEEEEEeCCHHHHHHHHHHhcCCccc-------cCccccccc---------CCCCCCCceEEcCCCccCCHHHHHH
Q 002168 53 YSSRSFAFVYFKRVEDAKAAKDALQGSDFR-------GNPIKIEFA---------RPAKPSKHLWVGGISQTVSKEELEE 116 (957)
Q Consensus 53 grskGyAFVeF~s~edA~~AL~~Lng~~I~-------Gr~I~V~~A---------~p~~~sr~LyVgNLP~~vTeedL~e 116 (957)
.+++|||||+|.+.++|.+|++.+++.... +........ ......++|||+|||.++++++|++
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 89 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRR 89 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 468999999999999999999888753321 222221111 1234468999999999999999999
Q ss_pred hhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 117 GFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 117 lFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
+|++||.|.+|++.++ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.|++...
T Consensus 90 ~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 90 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred HHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999999999999876 4789999999999999999999999999999999998664
No 40
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.66 E-value=2.6e-16 Score=155.04 Aligned_cols=134 Identities=19% Similarity=0.231 Sum_probs=107.1
Q ss_pred CCceEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCc
Q 002168 133 GNTAFVEYSRLEDAAEALKNI-NGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSS 211 (957)
Q Consensus 133 rG~AFVeF~t~edA~kAIe~L-nG~~i~Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (957)
+|+++|+|.+.++|++|++.+ ||..+.| .+.+.++............ ...
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~----------------------------~~~ 63 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH----------------------------HHH 63 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS----------------------------CCC
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc----------------------------ccc
Confidence 578999999999999999999 9999999 9999987654321111000 000
Q ss_pred CCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCC-CcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEE
Q 002168 212 VGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS-RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI 290 (957)
Q Consensus 212 ~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~s-rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V 290 (957)
..........+.|||++++. .+++++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 64 ~~~~~~~~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 64 HMHRDSCPLDCKVYVGNLGN-NGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp CSCSSSSTTSCEEEEESCCS-CCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cccccCCCCCCEEEEeCCCC-CCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 01111334466777777764 6999999999999999999999876 999999999999999999999999999999999
Q ss_pred EeecCC
Q 002168 291 MFSSSE 296 (957)
Q Consensus 291 ~~A~~~ 296 (957)
.|++.+
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 999754
No 41
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.66 E-value=8.7e-16 Score=152.13 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=100.7
Q ss_pred EEEEeec----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcc
Q 002168 126 DFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHS 201 (957)
Q Consensus 126 ~VkIlrd----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~ 201 (957)
.++++.+ +|+|||+|.+.++|++|++.+++....+..+.+.............
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 58 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS----------------------- 58 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC-----------------------
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc-----------------------
Confidence 3455554 5899999999999999999888754333333333211111000000
Q ss_pred cccCCCCCCcCCCCCCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeC------CCcEEEEEeCCHHHHHHHH
Q 002168 202 AYKRSHPQSSVGRNRDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAK 275 (957)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~------srG~AFVeF~T~edA~~AI 275 (957)
............+.|||++++. .+++++|+++|+.||.|.+|++.. ++|||||+|.+.++|.+|+
T Consensus 59 --------~~~~~~~~~~~~~~l~v~nl~~-~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 129 (158)
T 2kn4_A 59 --------HHHHHHMDVEGMTSLKVDNLTY-RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 129 (158)
T ss_dssp --------CCSSCCCCCCBCCEEEEESCCT-TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHH
T ss_pred --------cccccccCCCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 0000111233456777777764 699999999999999999999974 4789999999999999999
Q ss_pred HHhCCCeeCCCeEEEEeecCCC
Q 002168 276 EGLQGRLFNDPRITIMFSSSEL 297 (957)
Q Consensus 276 e~LNGk~f~Gr~I~V~~A~~~~ 297 (957)
+.|||..|.|+.|.|.|++...
T Consensus 130 ~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 130 DAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HHSTTEESSSSEEEEEEECCSS
T ss_pred HHhCCCEECCeEEEEEECCCCC
Confidence 9999999999999999997653
No 42
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.61 E-value=5.3e-16 Score=145.73 Aligned_cols=102 Identities=22% Similarity=0.368 Sum_probs=92.5
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe---cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT---YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~---grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
..++++|||+|||.++|+++|+++|++||.|.+|.+ +.++|||||+|.+.++|.+|++.|+|..|.|+.|+|.|+.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 457899999999999999999999999999998884 66789999999999999999999999999999999999975
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGN 123 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~ 123 (957)
.... ++++...++++|+++|++||.
T Consensus 85 ~~~~-----~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF-----QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT-----TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh-----hhhhHhHhHHHHHHHHHHhCC
Confidence 4433 677888999999999999984
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=140.20 Aligned_cols=77 Identities=29% Similarity=0.508 Sum_probs=71.8
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
.-.+++|||+|||.++|+++|+++|++||.|.+|+ +++++|||||+|.+.++|.+|++.|||..|.|+.|+|+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999887 356789999999999999999999999999999999999
Q ss_pred cCC
Q 002168 91 ARP 93 (957)
Q Consensus 91 A~p 93 (957)
|+|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 44
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.57 E-value=5.7e-15 Score=139.48 Aligned_cols=77 Identities=23% Similarity=0.439 Sum_probs=71.5
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
...+|||+|||+++++++|+++|++||.|.+|+|+++ +|+|||+|.+.++|.+|++.|||..++|+.|+|.++..+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3578999999999999999999999999999999987 468999999999999999999999999999999998765
Q ss_pred c
Q 002168 172 P 172 (957)
Q Consensus 172 ~ 172 (957)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 45
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.1e-15 Score=135.81 Aligned_cols=86 Identities=27% Similarity=0.455 Sum_probs=78.0
Q ss_pred CEEEEccCCCCCcHHHHHHHhccCCCeeEEEecC-CCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCCC----
Q 002168 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-SRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAK---- 95 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~gr-skGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~~---- 95 (957)
++|||+|||.++|+++|+++|++||.|.+|.+.+ ++|||||+|.+.++|.+|++.|++..|.|+.|+|.++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 5899999999999999999999999999999655 59999999999999999999999999999999999997522
Q ss_pred ---------CCCceEEcCCC
Q 002168 96 ---------PSKHLWVGGIS 106 (957)
Q Consensus 96 ---------~sr~LyVgNLP 106 (957)
...+||||||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 15689999986
No 46
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.55 E-value=8.8e-15 Score=135.64 Aligned_cols=82 Identities=23% Similarity=0.374 Sum_probs=74.2
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCc--cccCcccccc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSD--FRGNPIKIEF 90 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~--I~Gr~I~V~~ 90 (957)
+.....++++|||+|||+++|+++|+++|++||.|.+|++.++||||||+|.+.++|.+|++.+++.. |.|+.|+|.+
T Consensus 14 ~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 14 DPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp ---CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred ccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 34556789999999999999999999999999999999988899999999999999999999999876 7899999999
Q ss_pred cCCC
Q 002168 91 ARPA 94 (957)
Q Consensus 91 A~p~ 94 (957)
++..
T Consensus 94 S~~k 97 (100)
T 3r27_A 94 STSQ 97 (100)
T ss_dssp CSCS
T ss_pred cccc
Confidence 9743
No 47
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=135.09 Aligned_cols=79 Identities=23% Similarity=0.375 Sum_probs=73.2
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcC--CccccCcccccccCCC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQG--SDFRGNPIKIEFARPA 94 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng--~~I~Gr~I~V~~A~p~ 94 (957)
..++++|||+|||+++||+||+++|++||.|.+|++.+.||||||+|.+.++|.+|++.+++ ..|.|+.|+|.|+++.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 56889999999999999999999999999999999888899999999999999999988864 6899999999999754
Q ss_pred C
Q 002168 95 K 95 (957)
Q Consensus 95 ~ 95 (957)
.
T Consensus 93 ~ 93 (105)
T 1sjq_A 93 E 93 (105)
T ss_dssp S
T ss_pred C
Confidence 3
No 48
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=138.05 Aligned_cols=90 Identities=20% Similarity=0.297 Sum_probs=77.5
Q ss_pred CCCCCCCCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcC--CccccC
Q 002168 7 KFNRAYDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQG--SDFRGN 84 (957)
Q Consensus 7 k~~~~~d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng--~~I~Gr 84 (957)
+..+..+.....++++|||+|||+++||++|+++|++||.|.+|++.+.||||||+|.+.++|.+|++.+++ ..|.|+
T Consensus 18 ~~~~~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 18 GSHMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp ----CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred ccccccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 344444566678899999999999999999999999999999999878899999999999999999998874 689999
Q ss_pred cccccccCCCCC
Q 002168 85 PIKIEFARPAKP 96 (957)
Q Consensus 85 ~I~V~~A~p~~~ 96 (957)
.|+|.++++...
T Consensus 98 ~l~V~~a~~k~~ 109 (119)
T 2ad9_A 98 PIYIQFSNHKEL 109 (119)
T ss_dssp CCEEEECSSSSC
T ss_pred EEEEEEccCCCC
Confidence 999999975443
No 49
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.5e-14 Score=133.46 Aligned_cols=84 Identities=20% Similarity=0.274 Sum_probs=75.4
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCC--ccccCcccccc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGS--DFRGNPIKIEF 90 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~--~I~Gr~I~V~~ 90 (957)
+.....++++|||+|||++++|++|+++|++||.|.+|++.++||||||+|.+.++|.+|++.|++. .|.|+.|+|.|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3445678999999999999999999999999999999998888999999999999999999988764 49999999999
Q ss_pred cCCCCC
Q 002168 91 ARPAKP 96 (957)
Q Consensus 91 A~p~~~ 96 (957)
++....
T Consensus 88 a~~~~~ 93 (104)
T 1wex_A 88 STSKRI 93 (104)
T ss_dssp CSSSSC
T ss_pred ccCccc
Confidence 975443
No 50
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=132.35 Aligned_cols=75 Identities=27% Similarity=0.529 Sum_probs=70.4
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
..++|||+|||.++|+++|+++|++||.|.+|++++++ |+|||+|.+.++|.+|++.|||..+.|+.|+|.|++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35789999999999999999999999999999999873 589999999999999999999999999999999986
Q ss_pred C
Q 002168 170 S 170 (957)
Q Consensus 170 ~ 170 (957)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 51
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=134.92 Aligned_cols=80 Identities=21% Similarity=0.347 Sum_probs=74.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEEEccCC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNING--RQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG--~~i~Gr~I~V~~ak~k 171 (957)
....++|||+|||+++|+++|+++|++||.|.+|+++++||+|||+|.+.++|.+|++.|++ ..+.|+.|+|.|++.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 45678999999999999999999999999999999999999999999999999999998864 7899999999999876
Q ss_pred cc
Q 002168 172 PS 173 (957)
Q Consensus 172 ~~ 173 (957)
..
T Consensus 93 ~~ 94 (105)
T 1sjq_A 93 EL 94 (105)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 52
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3e-14 Score=130.31 Aligned_cols=81 Identities=30% Similarity=0.531 Sum_probs=76.1
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
+....+.++|||+|||.++|+++|+++|++||.|..|++.+++|||||+|.+.++|.+|++.|++..|.|+.|+|.|+++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 34467889999999999999999999999999999999889999999999999999999999999999999999999975
Q ss_pred C
Q 002168 94 A 94 (957)
Q Consensus 94 ~ 94 (957)
.
T Consensus 89 ~ 89 (99)
T 2cpj_A 89 S 89 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 53
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.9e-14 Score=129.93 Aligned_cols=75 Identities=27% Similarity=0.275 Sum_probs=71.9
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
...+..|||+||++.+||++|+++|.+||+|.+++...++|||||+|.+.++|.+|++.||+..+.|+.|+|+++
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356889999999999999999999999999999998889999999999999999999999999999999999986
No 54
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=2.6e-14 Score=132.51 Aligned_cols=79 Identities=24% Similarity=0.354 Sum_probs=73.9
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCce--eCCeEEEEEEccCC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQ--IGGEQLRVDFLRSQ 171 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~--i~Gr~I~V~~ak~k 171 (957)
..++++|||+|||.++|+++|+++|++||.|.+++++++||+|||+|.+.++|.+|++.|++.. +.|+.|+|.|++.+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 4578899999999999999999999999999999999999999999999999999999999874 78999999999865
Q ss_pred c
Q 002168 172 P 172 (957)
Q Consensus 172 ~ 172 (957)
.
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 3
No 55
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=6.2e-14 Score=127.74 Aligned_cols=81 Identities=27% Similarity=0.605 Sum_probs=75.5
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccc--cCcccccccCC
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR--GNPIKIEFARP 93 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~--Gr~I~V~~A~p 93 (957)
...++++|||+|||.++|+++|+++|++||.|.+|.+.+.+|||||+|.+.++|.+|++.|++..|. |+.|+|.|+++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 3567899999999999999999999999999999998888999999999999999999999999999 99999999986
Q ss_pred CCC
Q 002168 94 AKP 96 (957)
Q Consensus 94 ~~~ 96 (957)
...
T Consensus 93 ~~~ 95 (97)
T 1why_A 93 GPS 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 56
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.2e-14 Score=133.43 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=73.2
Q ss_pred CCCCCCEEEEccCCC-CCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCC--ccccCcccccccC
Q 002168 16 EAPPSSNLWVGNLSA-DTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGS--DFRGNPIKIEFAR 92 (957)
Q Consensus 16 e~~~s~tLfVgNLP~-svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~--~I~Gr~I~V~~A~ 92 (957)
...++++|||+|||+ ++||+||+++|++||.|.+|++.+.+|||||+|.+.++|.+|++.|++. .|.|+.|+|.+++
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECC
Confidence 356899999999999 9999999999999999999998889999999999999999999999865 4999999999997
Q ss_pred CC
Q 002168 93 PA 94 (957)
Q Consensus 93 p~ 94 (957)
..
T Consensus 91 ~~ 92 (102)
T 1x4d_A 91 KY 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 57
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.5e-14 Score=131.04 Aligned_cols=84 Identities=20% Similarity=0.341 Sum_probs=75.4
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhc--CCccccCcccccc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQ--GSDFRGNPIKIEF 90 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Ln--g~~I~Gr~I~V~~ 90 (957)
+.....++++|||+|||+++||++|+++|++||.|.+|++.+.||||||+|.+.++|.+|++.++ +..|.|+.|+|.|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 8 DKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 34556789999999999999999999999999999999988889999999999999999999774 6779999999999
Q ss_pred cCCCCC
Q 002168 91 ARPAKP 96 (957)
Q Consensus 91 A~p~~~ 96 (957)
++....
T Consensus 88 a~~~~~ 93 (101)
T 2cq1_A 88 SNHKEL 93 (101)
T ss_dssp CSCSSC
T ss_pred cCcccC
Confidence 975443
No 58
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.7e-14 Score=130.93 Aligned_cols=79 Identities=24% Similarity=0.468 Sum_probs=74.4
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
.....+++|||+|||.++++++|+++|++||.|.+|++.+++|||||+|.+.++|.+|++.|+|..|.|+.|+|.|+++
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3355689999999999999999999999999999999889999999999999999999999999999999999999864
No 59
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=5.4e-14 Score=127.19 Aligned_cols=80 Identities=28% Similarity=0.522 Sum_probs=73.2
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
..++++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 357899999999999999999999999999998883 55689999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002168 91 ARPAKP 96 (957)
Q Consensus 91 A~p~~~ 96 (957)
+++...
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 976544
No 60
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.9e-14 Score=130.38 Aligned_cols=84 Identities=29% Similarity=0.500 Sum_probs=75.9
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I 86 (957)
...+..+.++|||+|||.++++++|+++|++||.|..|.+ ++++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 3445678899999999999999999999999999999983 5678999999999999999999999999999999
Q ss_pred cccccCCCCC
Q 002168 87 KIEFARPAKP 96 (957)
Q Consensus 87 ~V~~A~p~~~ 96 (957)
+|.++++...
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dnm_A 86 RVQVARYGRR 95 (103)
T ss_dssp EEEECSSCCS
T ss_pred EEEECCcCCC
Confidence 9999986443
No 61
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=7e-14 Score=127.72 Aligned_cols=82 Identities=23% Similarity=0.511 Sum_probs=74.0
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
..+..+.++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++ +++..|.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 344678899999999999999999999999999998883 5578999999999999999997 999999999999
Q ss_pred ccccCCCCC
Q 002168 88 IEFARPAKP 96 (957)
Q Consensus 88 V~~A~p~~~ 96 (957)
|.++++...
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 999986544
No 62
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.7e-14 Score=129.09 Aligned_cols=84 Identities=25% Similarity=0.351 Sum_probs=75.6
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
..+..+.++|||+|||.++|+++|+++|++||.|..|. +++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34467889999999999999999999999999999988 345789999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 002168 88 IEFARPAKPS 97 (957)
Q Consensus 88 V~~A~p~~~s 97 (957)
|.++++.+..
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999865543
No 63
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.51 E-value=6.4e-15 Score=133.59 Aligned_cols=77 Identities=25% Similarity=0.395 Sum_probs=68.9
Q ss_pred CCEEEEccCCCCCcHHHHHHHhccCC-CeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhc-CCccccCccccccc
Q 002168 20 SSNLWVGNLSADTTDADLKELFGKFG-ALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQ-GSDFRGNPIKIEFA 91 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~e~FskfG-~I~~V~------~grskGyAFVeF~s~edA~~AL~~Ln-g~~I~Gr~I~V~~A 91 (957)
+++|||+|||+++||+||+++|++|| .|.+|+ +++++|||||+|.+.++|.+|++.++ +..|.|+.|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 58999999999999999999999999 788877 46789999999999999999998774 56799999999999
Q ss_pred CCCCC
Q 002168 92 RPAKP 96 (957)
Q Consensus 92 ~p~~~ 96 (957)
++.+.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86543
No 64
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.5e-14 Score=125.81 Aligned_cols=78 Identities=24% Similarity=0.452 Sum_probs=73.1
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHh-cCCccccCcccccccC
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDAL-QGSDFRGNPIKIEFAR 92 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~L-ng~~I~Gr~I~V~~A~ 92 (957)
.+..+.++|||+|||.++++++|+++|++||.|.+|+..+++|||||+|.+.++|.+|++.| ++..|.|+.|+|+|++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 34567899999999999999999999999999999998889999999999999999999888 9999999999999974
No 65
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.7e-14 Score=132.88 Aligned_cols=78 Identities=21% Similarity=0.259 Sum_probs=72.8
Q ss_pred CCCCceEEcCCCc-cCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCc--eeCCeEEEEEEccCC
Q 002168 95 KPSKHLWVGGISQ-TVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGR--QIGGEQLRVDFLRSQ 171 (957)
Q Consensus 95 ~~sr~LyVgNLP~-~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~--~i~Gr~I~V~~ak~k 171 (957)
.++++|||+|||+ ++|++||+++|++||.|.+|.+++++++|||+|.+.++|.+|++.||+. .+.|+.|+|.|++..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 4678999999999 9999999999999999999999999999999999999999999999864 599999999999865
Q ss_pred c
Q 002168 172 P 172 (957)
Q Consensus 172 ~ 172 (957)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 66
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=134.22 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=71.8
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
..+.++|||+|||+++++++|+++|++||.|.+|+ +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 46789999999999999999999999999999887 367899999999999999999999999999999999999
Q ss_pred cCC
Q 002168 91 ARP 93 (957)
Q Consensus 91 A~p 93 (957)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 853
No 67
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=6.2e-14 Score=127.76 Aligned_cols=89 Identities=35% Similarity=0.691 Sum_probs=79.8
Q ss_pred cCcccccccCCCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeC--C
Q 002168 83 GNPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIG--G 160 (957)
Q Consensus 83 Gr~I~V~~A~p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~--G 160 (957)
|...++.+.+ ..+.++|||+|||.++++++|+++|++||.|.+|.+.+++++|||+|.+.++|.+|++.||+..+. |
T Consensus 4 g~~~~~~~~~-~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g 82 (97)
T 1why_A 4 GSSGKIGYGK-ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CCCCCCCCCC-CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred CccccccCCC-CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 4455555543 455789999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred eEEEEEEccCCc
Q 002168 161 EQLRVDFLRSQP 172 (957)
Q Consensus 161 r~I~V~~ak~k~ 172 (957)
+.|+|.|++.+.
T Consensus 83 ~~l~V~~a~~~~ 94 (97)
T 1why_A 83 RRLRVDFAKSGP 94 (97)
T ss_dssp CBCEEEECCCCC
T ss_pred cEEEEEECCCCC
Confidence 999999998764
No 68
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.3e-14 Score=128.75 Aligned_cols=83 Identities=17% Similarity=0.309 Sum_probs=74.7
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
.....+.++|||+|||.++|+++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344577899999999999999999999999999998883 456799999999999999999999999999999999
Q ss_pred cccCCCCC
Q 002168 89 EFARPAKP 96 (957)
Q Consensus 89 ~~A~p~~~ 96 (957)
.++++...
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99986543
No 69
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.50 E-value=4.4e-14 Score=128.50 Aligned_cols=77 Identities=21% Similarity=0.440 Sum_probs=71.5
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
++++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|+|..|.|+.|+|.+++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5789999999999999999999999999999983 4568999999999999999999999999999999999997
Q ss_pred CCC
Q 002168 93 PAK 95 (957)
Q Consensus 93 p~~ 95 (957)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 70
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.50 E-value=3.9e-14 Score=125.35 Aligned_cols=76 Identities=34% Similarity=0.555 Sum_probs=70.9
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
..+.++|||+|||.++++++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|+|..|.|+.|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 467899999999999999999999999999999883 44789999999999999999999999999999999999
Q ss_pred cC
Q 002168 91 AR 92 (957)
Q Consensus 91 A~ 92 (957)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 71
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.6e-14 Score=134.90 Aligned_cols=89 Identities=19% Similarity=0.290 Sum_probs=77.4
Q ss_pred ccccccCCCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCC--ceeCCeEE
Q 002168 86 IKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNING--RQIGGEQL 163 (957)
Q Consensus 86 I~V~~A~p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG--~~i~Gr~I 163 (957)
.+........++++|||+|||+++++++|+++|++||.|.+|++++++|+|||+|.+.++|.+|++.|++ ..+.|+.|
T Consensus 20 ~~~~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 20 HMGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp --CCTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 3333333456789999999999999999999999999999999999999999999999999999999874 58999999
Q ss_pred EEEEccCCccc
Q 002168 164 RVDFLRSQPSR 174 (957)
Q Consensus 164 ~V~~ak~k~~r 174 (957)
+|.|++.+..+
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 72
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=5.4e-14 Score=128.36 Aligned_cols=81 Identities=30% Similarity=0.451 Sum_probs=74.1
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
...++++|||+|||.++|+++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3567899999999999999999999999999999983 4467999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 002168 90 FARPAKP 96 (957)
Q Consensus 90 ~A~p~~~ 96 (957)
++++...
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9986544
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.49 E-value=6.1e-14 Score=135.48 Aligned_cols=84 Identities=39% Similarity=0.684 Sum_probs=76.1
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I 86 (957)
...+..++++|||+|||.++|+++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4455678999999999999999999999999999998883 4678999999999999999999999999999999
Q ss_pred cccccCCCCC
Q 002168 87 KIEFARPAKP 96 (957)
Q Consensus 87 ~V~~A~p~~~ 96 (957)
+|+|+++.++
T Consensus 119 ~V~~a~~~~p 128 (129)
T 2kxn_B 119 RVDFSITKRP 128 (129)
T ss_dssp EESCCSSSSC
T ss_pred EEEEecCCCC
Confidence 9999976543
No 74
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1e-13 Score=128.60 Aligned_cols=80 Identities=20% Similarity=0.313 Sum_probs=73.8
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHh--CCceeCCeEEEEEEccCC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNI--NGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~L--nG~~i~Gr~I~V~~ak~k 171 (957)
..++++|||+|||..+++++|+++|++||.|.+|.+++++|+|||+|.+.++|.+|++.| ++..+.|+.|+|.|++.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 356789999999999999999999999999999999999999999999999999999977 467899999999999876
Q ss_pred cc
Q 002168 172 PS 173 (957)
Q Consensus 172 ~~ 173 (957)
..
T Consensus 92 ~~ 93 (101)
T 2cq1_A 92 EL 93 (101)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.49 E-value=7.7e-14 Score=125.45 Aligned_cols=80 Identities=25% Similarity=0.299 Sum_probs=73.3
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
..+.++|||+|||.++++++|+++|++||.|..|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|++++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 467899999999999999999999999999998883 4478999999999999999999999999999999999998
Q ss_pred CCCC
Q 002168 93 PAKP 96 (957)
Q Consensus 93 p~~~ 96 (957)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6544
No 76
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.49 E-value=4.8e-14 Score=132.92 Aligned_cols=79 Identities=28% Similarity=0.465 Sum_probs=71.9
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
..+..+.++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344678899999999999999999999999999998883 45689999999999999999999999999999999
Q ss_pred ccccC
Q 002168 88 IEFAR 92 (957)
Q Consensus 88 V~~A~ 92 (957)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99874
No 77
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.49 E-value=3e-14 Score=126.67 Aligned_cols=76 Identities=26% Similarity=0.431 Sum_probs=68.6
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
.+.++|||+|||.++++++|+++|++||.|.+|+. ++++|||||+|.+.++|.+|++.|++..|.|+.|+|+|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 56789999999999999999999999999998883 345799999999999999999999999999999999999
Q ss_pred CC
Q 002168 92 RP 93 (957)
Q Consensus 92 ~p 93 (957)
++
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 65
No 78
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.49 E-value=5.5e-14 Score=126.96 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=71.5
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
.+..|||+||++.+|+++|+++|.+||+|.++++...+|||||+|.+.++|++|++.||+..+.|+.|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999985
No 79
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.49 E-value=2.2e-14 Score=139.53 Aligned_cols=115 Identities=22% Similarity=0.365 Sum_probs=75.0
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC---CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-
Q 002168 57 SFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP---AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD- 132 (957)
Q Consensus 57 GyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p---~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd- 132 (957)
-++|++|.+...|..|++.+++....|+. .+.+..+ ....++|||+|||..+++++|+++|++||.|..|+++++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 83 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR 83 (135)
T ss_dssp -------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC
Confidence 46788888888899999988887665543 2334333 334689999999999999999999999999999999876
Q ss_pred -----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 133 -----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 133 -----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
+|+|||+|.+.++|.+|++.||+..|.|+.|+|.|++...
T Consensus 84 ~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 84 YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp SSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred CCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 4699999999999999999999999999999999998654
No 80
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8.5e-14 Score=129.54 Aligned_cols=81 Identities=30% Similarity=0.571 Sum_probs=73.7
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe---cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT---YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~---grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
...+.++|||+|||.++|+++|+++|++||.|..|.+ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|+|++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 3567899999999999999999999999999998883 4468899999999999999999999999999999999998
Q ss_pred CCCC
Q 002168 93 PAKP 96 (957)
Q Consensus 93 p~~~ 96 (957)
+...
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 81
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.49 E-value=9.5e-14 Score=128.05 Aligned_cols=80 Identities=34% Similarity=0.506 Sum_probs=72.6
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCcccc---Ccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRG---NPIKI 88 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~G---r~I~V 88 (957)
..+.++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 467899999999999999999999999999998883 3448999999999999999999999999998 99999
Q ss_pred cccCCCCC
Q 002168 89 EFARPAKP 96 (957)
Q Consensus 89 ~~A~p~~~ 96 (957)
.++++...
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99976544
No 82
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.49 E-value=5e-14 Score=124.11 Aligned_cols=75 Identities=35% Similarity=0.608 Sum_probs=69.3
Q ss_pred CCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 20 SSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
+.+|||+|||.++++++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|+|..|.|+.|+|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 468999999999999999999999999998873 44589999999999999999999999999999999999975
Q ss_pred C
Q 002168 94 A 94 (957)
Q Consensus 94 ~ 94 (957)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 83
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=5.2e-14 Score=133.16 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=72.4
Q ss_pred CCCCCCEEEEccCCCC-CcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcC--CccccCcccccccC
Q 002168 16 EAPPSSNLWVGNLSAD-TTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQG--SDFRGNPIKIEFAR 92 (957)
Q Consensus 16 e~~~s~tLfVgNLP~s-vTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng--~~I~Gr~I~V~~A~ 92 (957)
+..++++|||+|||++ +|++||+++|++||.|.+|++.++||||||+|.+.++|.+|++.|++ ..|.|+.|+|.+++
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 3678999999999998 99999999999999999999989999999999999999999998864 56999999999996
Q ss_pred C
Q 002168 93 P 93 (957)
Q Consensus 93 p 93 (957)
.
T Consensus 101 ~ 101 (112)
T 1x4f_A 101 K 101 (112)
T ss_dssp S
T ss_pred c
Confidence 4
No 84
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.6e-14 Score=128.05 Aligned_cols=82 Identities=34% Similarity=0.603 Sum_probs=74.3
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
...+.++|||+|||.++++++|+++|++||.|..|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3568899999999999999999999999999998883 3468999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 002168 90 FARPAKPS 97 (957)
Q Consensus 90 ~A~p~~~s 97 (957)
++++....
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99765443
No 85
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-13 Score=123.97 Aligned_cols=78 Identities=21% Similarity=0.431 Sum_probs=72.9
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCCCC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKP 96 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~~~ 96 (957)
..+.++|||+|||.++|+++|+++|++||.|.+|++. ++||||+|.+.++|.+|++.|++..|.|+.|+|+++++...
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 5678999999999999999999999999999999875 79999999999999999999999999999999999976544
No 86
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=8.2e-14 Score=128.19 Aligned_cols=84 Identities=26% Similarity=0.444 Sum_probs=75.6
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEec----CCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY----SSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~g----rskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
+..+..+.++|||+|||+++|+++|+++|++||.|..|++. +++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 8 DRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34446789999999999999999999999999999988843 67899999999999999999999999999999999
Q ss_pred cccCCCCC
Q 002168 89 EFARPAKP 96 (957)
Q Consensus 89 ~~A~p~~~ 96 (957)
.++++...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99976543
No 87
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.6e-13 Score=126.85 Aligned_cols=83 Identities=29% Similarity=0.473 Sum_probs=74.7
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecC-------CCcEEEEEeCCHHHHHHHHHHh-cCCccccCc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYS-------SRSFAFVYFKRVEDAKAAKDAL-QGSDFRGNP 85 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~gr-------skGyAFVeF~s~edA~~AL~~L-ng~~I~Gr~ 85 (957)
..+..+.++|||+|||.++|+++|+++|++||.|..|++.+ ++|||||+|.+.++|.+|++.| ++..|.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 34467889999999999999999999999999999998433 4899999999999999999999 999999999
Q ss_pred ccccccCCCCC
Q 002168 86 IKIEFARPAKP 96 (957)
Q Consensus 86 I~V~~A~p~~~ 96 (957)
|+|.|+++...
T Consensus 89 l~v~~a~~~~~ 99 (107)
T 2cph_A 89 LVLEWADSEVT 99 (107)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999986544
No 88
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.48 E-value=7.5e-14 Score=131.15 Aligned_cols=83 Identities=28% Similarity=0.468 Sum_probs=74.3
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
..+..+.++|||+|||.++++++|+++|++||.|.+|+ +++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456789999999999999999999999999998887 345678999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 002168 88 IEFARPAKP 96 (957)
Q Consensus 88 V~~A~p~~~ 96 (957)
|+|+++...
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999986544
No 89
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.48 E-value=7.4e-14 Score=131.06 Aligned_cols=84 Identities=27% Similarity=0.475 Sum_probs=75.3
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I 86 (957)
...+..+.++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4455678999999999999999999999999999998883 3457999999999999999999999999999999
Q ss_pred cccccCCCCC
Q 002168 87 KIEFARPAKP 96 (957)
Q Consensus 87 ~V~~A~p~~~ 96 (957)
+|.|+++...
T Consensus 88 ~V~~a~~~~~ 97 (115)
T 2dgo_A 88 RTNWATRKPP 97 (115)
T ss_dssp EEEESSCCCC
T ss_pred EEEEccCCCC
Confidence 9999976543
No 90
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=9.4e-14 Score=127.78 Aligned_cols=82 Identities=29% Similarity=0.492 Sum_probs=74.2
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
.+..+.++|||+|||.++++++|+++|++||.|.+|++ ..++|||||+|.+.++|.+|++.|++..|.|+.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 44578899999999999999999999999999998884 33689999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002168 91 ARPAKP 96 (957)
Q Consensus 91 A~p~~~ 96 (957)
+++...
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 986543
No 91
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.3e-14 Score=127.03 Aligned_cols=81 Identities=31% Similarity=0.466 Sum_probs=73.5
Q ss_pred CCCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCc
Q 002168 12 YDDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNP 85 (957)
Q Consensus 12 ~d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~ 85 (957)
.......+.++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34445678899999999999999999999999999999883 556899999999999999999999999999999
Q ss_pred ccccccC
Q 002168 86 IKIEFAR 92 (957)
Q Consensus 86 I~V~~A~ 92 (957)
|+|+|++
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999974
No 92
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.7e-14 Score=129.85 Aligned_cols=83 Identities=34% Similarity=0.589 Sum_probs=74.7
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
..+..+.++|||+|||.++++++|+++|++||.|..|.+ ++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 344678999999999999999999999999999998883 45678999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 002168 88 IEFARPAKP 96 (957)
Q Consensus 88 V~~A~p~~~ 96 (957)
|.++++...
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999986544
No 93
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.6e-13 Score=126.28 Aligned_cols=83 Identities=29% Similarity=0.511 Sum_probs=74.7
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEec----CCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY----SSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~g----rskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
.....+.++|||+|||.++|+++|+++|++||.|.+|++. .++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3446788999999999999999999999999999988843 358999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 002168 90 FARPAKP 96 (957)
Q Consensus 90 ~A~p~~~ 96 (957)
++++...
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9976543
No 94
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.5e-14 Score=135.84 Aligned_cols=77 Identities=29% Similarity=0.359 Sum_probs=73.3
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
.+.+++|||+|||+++++++|+++|++||.|.+|.+.+++|||||+|.+.++|.+|++.|||..|.|+.|+|.|++.
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 45678999999999999999999999999999999888999999999999999999999999999999999999964
No 95
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=125.89 Aligned_cols=80 Identities=28% Similarity=0.486 Sum_probs=73.2
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCee-EEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCC
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALD-KVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~-~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~ 94 (957)
+...+++|||+|||.++|+++|+++|++||.|. .+.+++++|||||+|.+.++|.+|++.|+|..|.|+.|+|+++++.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 356689999999999999999999999999985 4557889999999999999999999999999999999999999765
Q ss_pred C
Q 002168 95 K 95 (957)
Q Consensus 95 ~ 95 (957)
+
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 96
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=122.70 Aligned_cols=76 Identities=26% Similarity=0.524 Sum_probs=72.5
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEEcc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNI-NGRQIGGEQLRVDFLR 169 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~L-nG~~i~Gr~I~V~~ak 169 (957)
....++|||+|||..+++++|+++|++||.|.+|++.+++|+|||+|.+.++|.+|++.| ++..+.|+.|+|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456789999999999999999999999999999999999999999999999999999999 9999999999999974
No 97
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9.5e-14 Score=129.34 Aligned_cols=81 Identities=20% Similarity=0.488 Sum_probs=75.8
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCCC
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAK 95 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~~ 95 (957)
.....++|||+|||.++++++|+++|++||.|..|++.+.+|||||+|.+.++|.+|++.|++..|.|+.|+|.|+++..
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 45678999999999999999999999999999999988889999999999999999999999999999999999998654
Q ss_pred C
Q 002168 96 P 96 (957)
Q Consensus 96 ~ 96 (957)
.
T Consensus 101 ~ 101 (109)
T 1x4g_A 101 D 101 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 98
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.47 E-value=3e-14 Score=129.15 Aligned_cols=78 Identities=18% Similarity=0.397 Sum_probs=70.1
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccC-CEeEEEEeec------CCceEEEeCCHHHHHHHHHHhC-CceeCCeEEEEEEc
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLKD------GNTAFVEYSRLEDAAEALKNIN-GRQIGGEQLRVDFL 168 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG-~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~Ln-G~~i~Gr~I~V~~a 168 (957)
+++|||+|||.++|+++|+++|++|| .|.+|+++++ +|+|||+|.+.++|.+|++.++ +..++|+.|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999876 4789999999999999999874 56899999999999
Q ss_pred cCCccc
Q 002168 169 RSQPSR 174 (957)
Q Consensus 169 k~k~~r 174 (957)
..+...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 876543
No 99
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.47 E-value=1.3e-13 Score=127.32 Aligned_cols=83 Identities=24% Similarity=0.394 Sum_probs=74.5
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCcc---ccC
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDF---RGN 84 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I---~Gr 84 (957)
.....+.++|||+|||.++|+++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..+ .|+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 344678899999999999999999999999999999983 55789999999999999999999999987 899
Q ss_pred cccccccCCCCC
Q 002168 85 PIKIEFARPAKP 96 (957)
Q Consensus 85 ~I~V~~A~p~~~ 96 (957)
.|+|.++++...
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999976543
No 100
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6.4e-14 Score=129.45 Aligned_cols=79 Identities=20% Similarity=0.471 Sum_probs=72.2
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
...++++|||+|||.++++++|+++|++||.|.+|.+ ++++|||||+|.+.++|.+|++.|+|..|.|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3456789999999999999999999999999998883 5568999999999999999999999999999999999
Q ss_pred ccCCC
Q 002168 90 FARPA 94 (957)
Q Consensus 90 ~A~p~ 94 (957)
++++.
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98654
No 101
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.47 E-value=4.3e-14 Score=129.72 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=69.9
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCC--eeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCC----cccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGA--LDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGS----DFRG 83 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~--I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~----~I~G 83 (957)
.....++|||+|||+++|+++|+++|++||. |.+|+ ++++||||||+|.+.++|.+|++.||+. .|.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4577899999999999999999999999996 45666 4778999999999999999999999997 4899
Q ss_pred CcccccccCC
Q 002168 84 NPIKIEFARP 93 (957)
Q Consensus 84 r~I~V~~A~p 93 (957)
+.|+|+||+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999863
No 102
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.47 E-value=9.6e-14 Score=123.37 Aligned_cols=78 Identities=27% Similarity=0.546 Sum_probs=70.2
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||.++++++|+++|++||.|.+|++.++ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 345789999999999999999999999999999999987 36899999999999999999999999999999999
Q ss_pred ccCC
Q 002168 168 LRSQ 171 (957)
Q Consensus 168 ak~k 171 (957)
++.+
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8764
No 103
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.4e-13 Score=128.05 Aligned_cols=83 Identities=25% Similarity=0.422 Sum_probs=75.3
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhc------CCccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQ------GSDFR 82 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Ln------g~~I~ 82 (957)
.+..+.++|||+|||.++|+++|+++|.+||.|.+|++ ++++|||||+|.+.++|.+|++.++ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 44678899999999999999999999999999999983 4679999999999999999999999 99999
Q ss_pred cCcccccccCCCCCC
Q 002168 83 GNPIKIEFARPAKPS 97 (957)
Q Consensus 83 Gr~I~V~~A~p~~~s 97 (957)
|+.|+|.++.+....
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999865543
No 104
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6.2e-14 Score=126.64 Aligned_cols=80 Identities=39% Similarity=0.613 Sum_probs=73.1
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
..+..++++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344678899999999999999999999999999998883 56789999999999999999999999999999999
Q ss_pred ccccCC
Q 002168 88 IEFARP 93 (957)
Q Consensus 88 V~~A~p 93 (957)
|+|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999863
No 105
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=2.5e-13 Score=126.52 Aligned_cols=79 Identities=19% Similarity=0.337 Sum_probs=74.2
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCC-----eEEEEEEc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGG-----EQLRVDFL 168 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~G-----r~I~V~~a 168 (957)
....++|||+|||.++++++|+++|++||.|..|+|+.+ |+|||+|.+.++|++||+.||+..|.| +.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 456789999999999999999999999999999999988 999999999999999999999999999 99999999
Q ss_pred cCCcc
Q 002168 169 RSQPS 173 (957)
Q Consensus 169 k~k~~ 173 (957)
..+..
T Consensus 91 ~~~~~ 95 (108)
T 1x4c_A 91 GPRSP 95 (108)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 87653
No 106
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=122.96 Aligned_cols=78 Identities=19% Similarity=0.414 Sum_probs=71.4
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
...++|||+|||.++|+++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|+|..|.|+.|+|++
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 35789999999999999999999999999998883 22899999999999999999999999999999999999
Q ss_pred cCCCC
Q 002168 91 ARPAK 95 (957)
Q Consensus 91 A~p~~ 95 (957)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97654
No 107
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=127.02 Aligned_cols=81 Identities=27% Similarity=0.435 Sum_probs=73.8
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhcc-CCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCc-cccCcccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGK-FGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSD-FRGNPIKI 88 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~Fsk-fG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~-I~Gr~I~V 88 (957)
+..++++|||+|||.++|+++|+++|++ ||.|.+|++ ++++|||||+|.+.++|.+|++.|++.. |.|+.|+|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4578899999999999999999999999 999998883 4568999999999999999999999999 99999999
Q ss_pred cccCCCCC
Q 002168 89 EFARPAKP 96 (957)
Q Consensus 89 ~~A~p~~~ 96 (957)
.++.+...
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99976544
No 108
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.47 E-value=9.6e-14 Score=130.53 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=73.8
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
.+.++|||+||++.+++++|+++|++||.|.+|+|+++ +|+|||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999877 368999999999999999999999999999999999
Q ss_pred cCCccc
Q 002168 169 RSQPSR 174 (957)
Q Consensus 169 k~k~~r 174 (957)
.....+
T Consensus 84 ~~~~~~ 89 (110)
T 3s8s_A 84 IKGQQR 89 (110)
T ss_dssp STTHHH
T ss_pred CCCcHH
Confidence 766543
No 109
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.8e-14 Score=130.42 Aligned_cols=82 Identities=29% Similarity=0.538 Sum_probs=73.8
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
...+..+.++|||+|||.++|+++|+++|++||.|.+|++ +.++|||||+|.+.++|.+|++.|+|..|.|+.|+|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3444678899999999999999999999999999998884 335899999999999999999999999999999999
Q ss_pred cccCCC
Q 002168 89 EFARPA 94 (957)
Q Consensus 89 ~~A~p~ 94 (957)
+++++.
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998653
No 110
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=8.2e-14 Score=126.90 Aligned_cols=80 Identities=34% Similarity=0.514 Sum_probs=72.4
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEec---------CCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTY---------SSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~g---------rskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
..++++|||+|||.++|+++|+++|++||.|..|.+. +++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3578999999999999999999999999999988732 5678999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 002168 88 IEFARPAKP 96 (957)
Q Consensus 88 V~~A~p~~~ 96 (957)
|.++++...
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999976543
No 111
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.47 E-value=6.7e-14 Score=132.13 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=72.7
Q ss_pred CcccccccCCCCCCCceEEcCCCccCCHHHHHHhhcccC-CEeEEEEee--cCCceEEEeCCHHHHHHHHHHhCCceeCC
Q 002168 84 NPIKIEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFG-NIEDFKFLK--DGNTAFVEYSRLEDAAEALKNINGRQIGG 160 (957)
Q Consensus 84 r~I~V~~A~p~~~sr~LyVgNLP~~vTeedL~elFskfG-~I~~VkIlr--drG~AFVeF~t~edA~kAIe~LnG~~i~G 160 (957)
.++.++++.+....++|||+|||+++++++|+++|++|| .|..+.+.. .+|+|||+|.+.++|++|++.|||..+.|
T Consensus 15 ~~~~~~~~~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 15 VPRGSHMSKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp ----------CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred eecchhcCCCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 367778887778889999999999999999999999999 899999863 47999999999999999999999999999
Q ss_pred eEEEEEEccCCc
Q 002168 161 EQLRVDFLRSQP 172 (957)
Q Consensus 161 r~I~V~~ak~k~ 172 (957)
+.|+|.+++...
T Consensus 95 r~i~V~~a~~~p 106 (111)
T 2jvr_A 95 SVITVERDDNPP 106 (111)
T ss_dssp EEEEEEESCC--
T ss_pred eEEEEEECCCCC
Confidence 999999987543
No 112
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8e-14 Score=127.89 Aligned_cols=80 Identities=34% Similarity=0.557 Sum_probs=73.9
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
..+.++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 568899999999999999999999999999998883 55799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002168 91 ARPAKP 96 (957)
Q Consensus 91 A~p~~~ 96 (957)
+++...
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 986544
No 113
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.46 E-value=1e-13 Score=129.64 Aligned_cols=81 Identities=26% Similarity=0.580 Sum_probs=72.8
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
.....++++|||+|||.++|+++|+++|++||.|.+|.+. +|||||+|.+.++|.+|++.|+|..|.|+.|+|.++++
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3446788999999999999999999999999999999866 89999999999999999999999999999999999976
Q ss_pred CCC
Q 002168 94 AKP 96 (957)
Q Consensus 94 ~~~ 96 (957)
...
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 114
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=6.2e-14 Score=127.07 Aligned_cols=79 Identities=27% Similarity=0.505 Sum_probs=72.1
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEE-E------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKV-T------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V-~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
.++++|||+|||.++++++|+++|++||.|.+| + +++++|||||+|.+.++|.+|++.|++..|.|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 578999999999999999999999999999877 5 345689999999999999999988999999999999999
Q ss_pred cCCCCC
Q 002168 91 ARPAKP 96 (957)
Q Consensus 91 A~p~~~ 96 (957)
+++...
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 976543
No 115
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.1e-13 Score=124.28 Aligned_cols=80 Identities=23% Similarity=0.380 Sum_probs=75.0
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
....++|||+|||..+++++|+++|++||.|.+|+++++ +++|||+|.+.++|.+|++.||+..|+|+.|+|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 456789999999999999999999999999999999987 6899999999999999999999999999999999998
Q ss_pred CCcc
Q 002168 170 SQPS 173 (957)
Q Consensus 170 ~k~~ 173 (957)
.+..
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 7653
No 116
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=129.24 Aligned_cols=80 Identities=28% Similarity=0.514 Sum_probs=72.9
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
....+.++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.++|..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33577899999999999999999999999999998883 456899999999999999999999999999999999
Q ss_pred cccCCC
Q 002168 89 EFARPA 94 (957)
Q Consensus 89 ~~A~p~ 94 (957)
+++++.
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 999754
No 117
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=125.73 Aligned_cols=78 Identities=29% Similarity=0.477 Sum_probs=71.0
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeE--------EE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK--------VT------TYSSRSFAFVYFKRVEDAKAAKDALQGSD 80 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~--------V~------~grskGyAFVeF~s~edA~~AL~~Lng~~ 80 (957)
....+.++|||+|||.++|+++|+++|++||.|.. |+ +++++|||||+|.+.++|.+|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34577899999999999999999999999999988 66 24568999999999999999999999999
Q ss_pred cccCcccccccC
Q 002168 81 FRGNPIKIEFAR 92 (957)
Q Consensus 81 I~Gr~I~V~~A~ 92 (957)
|.|+.|+|++++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 118
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.8e-13 Score=127.38 Aligned_cols=80 Identities=24% Similarity=0.505 Sum_probs=75.9
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPS 173 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~ 173 (957)
....++|||+|||..+++++|+++|++||.|..|++.+++|+|||+|.+.++|.+|++.|||..+.|+.|+|.|++.+..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999987653
No 119
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.46 E-value=9.1e-14 Score=129.40 Aligned_cols=81 Identities=21% Similarity=0.431 Sum_probs=73.3
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
....++++|||+|||.++|+++|+++|++||.|.+|.+ ++++|||||+|.+.++|.+|++.|+|..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 33567889999999999999999999999999999983 456899999999999999999999999999999999
Q ss_pred cccCCCC
Q 002168 89 EFARPAK 95 (957)
Q Consensus 89 ~~A~p~~ 95 (957)
.|+++..
T Consensus 101 ~~a~~~~ 107 (110)
T 1oo0_B 101 DWCFVKG 107 (110)
T ss_dssp EESEESS
T ss_pred EEcccCC
Confidence 9997544
No 120
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=126.28 Aligned_cols=80 Identities=20% Similarity=0.412 Sum_probs=72.5
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCee-EEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCc----
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALD-KVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNP---- 85 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~-~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~---- 85 (957)
..++++|||+|||.++++++|+++|++||.|. +|++ ++++|||||+|.+.++|.+|++.|++..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 56789999999999999999999999999998 8873 456799999999999999999999999999999
Q ss_pred ccccccCCCCC
Q 002168 86 IKIEFARPAKP 96 (957)
Q Consensus 86 I~V~~A~p~~~ 96 (957)
|+|.|+++...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999976543
No 121
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.4e-13 Score=128.77 Aligned_cols=84 Identities=30% Similarity=0.470 Sum_probs=74.8
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCee--------EEE------ecCCCcEEEEEeCCHHHHHHHHHHhcC
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALD--------KVT------TYSSRSFAFVYFKRVEDAKAAKDALQG 78 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~--------~V~------~grskGyAFVeF~s~edA~~AL~~Lng 78 (957)
+..+..+.++|||+|||.++|+++|+++|++||.|. .|+ +++++|||||+|.+.++|.+|++.|++
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 87 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDG 87 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTT
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCC
Confidence 344567899999999999999999999999999998 466 345689999999999999999999999
Q ss_pred CccccCcccccccCCCCC
Q 002168 79 SDFRGNPIKIEFARPAKP 96 (957)
Q Consensus 79 ~~I~Gr~I~V~~A~p~~~ 96 (957)
..|.|+.|+|.++++...
T Consensus 88 ~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp CEETTEECEEECSSCCCC
T ss_pred CccCCCEEEEEECCCCCC
Confidence 999999999999986544
No 122
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.46 E-value=8.9e-14 Score=130.51 Aligned_cols=79 Identities=22% Similarity=0.399 Sum_probs=73.5
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec---CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd---rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
...+++|||+|||..+++++|+++|+.||.|.+|.+.++ +|+|||+|.+.++|.+|++.|||..+.|+.|.|.|+..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 566789999999999999999999999999999999876 57999999999999999999999999999999999875
Q ss_pred Cc
Q 002168 171 QP 172 (957)
Q Consensus 171 k~ 172 (957)
..
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 43
No 123
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.46 E-value=3.3e-14 Score=128.02 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=64.5
Q ss_pred CEEEEccCCCCCcHHHHHHHhccCC--CeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 21 SNLWVGNLSADTTDADLKELFGKFG--ALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~e~FskfG--~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
.+|||+|||+++|+++|+++|++|| .|.+|+ +++++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 888776 45678999999999999999999999999999999999997
Q ss_pred CCCC
Q 002168 93 PAKP 96 (957)
Q Consensus 93 p~~~ 96 (957)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 124
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.46 E-value=1.9e-13 Score=120.84 Aligned_cols=76 Identities=36% Similarity=0.640 Sum_probs=71.4
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||.++++++|+++|++||.|.+|.+.++ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999876 67899999999999999999999999999999999
Q ss_pred cc
Q 002168 168 LR 169 (957)
Q Consensus 168 ak 169 (957)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 125
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2.3e-13 Score=124.20 Aligned_cols=80 Identities=28% Similarity=0.396 Sum_probs=74.5
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|.+|++++++ |+|||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999998874 8999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002168 168 LRSQPS 173 (957)
Q Consensus 168 ak~k~~ 173 (957)
++.+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 126
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.46 E-value=3.4e-13 Score=126.47 Aligned_cols=81 Identities=28% Similarity=0.594 Sum_probs=74.9
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|..|+++++ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999999987 36899999999999999999999999999999999
Q ss_pred ccCCccc
Q 002168 168 LRSQPSR 174 (957)
Q Consensus 168 ak~k~~r 174 (957)
++.+...
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 127
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.46 E-value=1.7e-13 Score=120.73 Aligned_cols=74 Identities=24% Similarity=0.484 Sum_probs=70.5
Q ss_pred CceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
.+|||+|||.++++++|+++|++||.|.++.+.++ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.|++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999988 578999999999999999999999999999999999765
No 128
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=130.20 Aligned_cols=77 Identities=36% Similarity=0.632 Sum_probs=71.4
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
..+.++|||+|||.++|+++|+++|++||.|.+|.+ ++++|||||+|.+.++|.+|++.|+|..|.|+.|+|+++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999998883 446799999999999999999999999999999999999
Q ss_pred CC
Q 002168 92 RP 93 (957)
Q Consensus 92 ~p 93 (957)
++
T Consensus 84 ~~ 85 (116)
T 2fy1_A 84 KK 85 (116)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 129
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.3e-13 Score=124.16 Aligned_cols=81 Identities=28% Similarity=0.508 Sum_probs=75.1
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
....++|||+|||..+++++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 456799999999999999999999999999999999986 5799999999999999999999999999999999998
Q ss_pred CCccc
Q 002168 170 SQPSR 174 (957)
Q Consensus 170 ~k~~r 174 (957)
.+..+
T Consensus 92 ~~~~~ 96 (103)
T 2cqi_A 92 TPSSQ 96 (103)
T ss_dssp CTTCC
T ss_pred CCccc
Confidence 76543
No 130
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=4.5e-13 Score=124.92 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=72.0
Q ss_pred CCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCC--eeCCCeEEEEeec
Q 002168 217 DGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGR--LFNDPRITIMFSS 294 (957)
Q Consensus 217 ~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk--~f~Gr~I~V~~A~ 294 (957)
...++++|||++++. .+++++|+++|++||.|.+|.++++||||||+|.+.++|.+|++.||+. .|.|++|.|.|++
T Consensus 11 ~~~p~~~l~V~nLp~-~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 11 KVSVSPVVHVRGLCE-SVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCSEEEEESCCS-SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred cCCCCCEEEEeCCCC-CCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 455678888888884 7999999999999999999999999999999999999999999999765 5999999999997
Q ss_pred CCC
Q 002168 295 SEL 297 (957)
Q Consensus 295 ~~~ 297 (957)
.+.
T Consensus 90 ~~~ 92 (104)
T 1wex_A 90 SKR 92 (104)
T ss_dssp SSS
T ss_pred Ccc
Confidence 654
No 131
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.45 E-value=1.2e-13 Score=138.42 Aligned_cols=113 Identities=23% Similarity=0.334 Sum_probs=72.3
Q ss_pred EEeCCHHHHHHHHHHhcCCccc--cCcccccccC-----------------------CCCCCCceEEcCCCccCCHHHHH
Q 002168 61 VYFKRVEDAKAAKDALQGSDFR--GNPIKIEFAR-----------------------PAKPSKHLWVGGISQTVSKEELE 115 (957)
Q Consensus 61 VeF~s~edA~~AL~~Lng~~I~--Gr~I~V~~A~-----------------------p~~~sr~LyVgNLP~~vTeedL~ 115 (957)
.+|.+.+||..|+..+++...+ |+.+...++. .....++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7889999999999888887654 5555544421 12234679999999999999999
Q ss_pred HhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCcc
Q 002168 116 EGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPS 173 (957)
Q Consensus 116 elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~ 173 (957)
++|++||.|..|.|+.+ +|+|||+|.+.++|.+||+.|||..|.|+.|.|.|+..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 99999999999999987 47999999999999999999999999999999999986653
No 132
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.2e-13 Score=124.23 Aligned_cols=79 Identities=22% Similarity=0.387 Sum_probs=73.7
Q ss_pred CCCCCceEEcCCCccCCHHHHH----HhhcccCCEeEEEEeec---CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELE----EGFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~----elFskfG~I~~VkIlrd---rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
....++|||+|||..+++++|+ ++|++||.|.+|+++.+ +++|||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999 99999999999999977 7899999999999999999999999999999999
Q ss_pred EccCCc
Q 002168 167 FLRSQP 172 (957)
Q Consensus 167 ~ak~k~ 172 (957)
+++...
T Consensus 86 ~a~~~~ 91 (96)
T 2dgx_A 86 LATGAS 91 (96)
T ss_dssp ECCCSS
T ss_pred EcCCCC
Confidence 997654
No 133
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=126.51 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=74.9
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
....++|||+|||..+++++|+++|++||.|.+|++.+++|+|||+|.+.++|.+|++.||+..+.|+.|+|.|++.+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 3557899999999999999999999999999999999999999999999999999999999999999999999997654
No 134
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.45 E-value=2e-13 Score=125.09 Aligned_cols=78 Identities=19% Similarity=0.403 Sum_probs=71.6
Q ss_pred CCCCCCCEEEEccCCC-CCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 15 KEAPPSSNLWVGNLSA-DTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~-svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
...+++++|||+|||. ++++++|+++|++||.|.+|++ .+|||||+|.+.++|.+|++.|+|..+.|+.|+|+++++
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 3467899999999998 9999999999999999999987 489999999999999999999999999999999999864
Q ss_pred C
Q 002168 94 A 94 (957)
Q Consensus 94 ~ 94 (957)
.
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 135
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=5.9e-14 Score=127.34 Aligned_cols=84 Identities=24% Similarity=0.370 Sum_probs=75.5
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE-ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~-~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
+.....+.++|||+|||.++|+++|+++|++||.|..+. .++++|||||+|.+.++|.+|++.|++..|.|+.|+|.++
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 444567889999999999999999999999999998773 5778999999999999999999999999999999999999
Q ss_pred CCCCC
Q 002168 92 RPAKP 96 (957)
Q Consensus 92 ~p~~~ 96 (957)
++...
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76543
No 136
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.45 E-value=8.3e-14 Score=125.96 Aligned_cols=78 Identities=35% Similarity=0.481 Sum_probs=71.1
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
....+.++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|+
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34567899999999999999999999999999998883 3458999999999999999999999999999999999
Q ss_pred ccC
Q 002168 90 FAR 92 (957)
Q Consensus 90 ~A~ 92 (957)
+++
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 985
No 137
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1e-13 Score=127.03 Aligned_cols=77 Identities=23% Similarity=0.409 Sum_probs=73.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
....++|||+|||.++++++|+++|++||.|.+|++.+.+|+|||+|.+.++|.+|++.|||..++|+.|+|.|++.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999865
No 138
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=132.21 Aligned_cols=79 Identities=25% Similarity=0.450 Sum_probs=72.2
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHH----HHhccCCCeeEEEe---cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLK----ELFGKFGALDKVTT---YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~----e~FskfG~I~~V~~---grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
.+..++++|||+|||+.+++++|+ ++|++||.|.+|.+ ++++|||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 345678999999999999999876 69999999998883 67899999999999999999999999999999999
Q ss_pred ccccCC
Q 002168 88 IEFARP 93 (957)
Q Consensus 88 V~~A~p 93 (957)
|.|++.
T Consensus 104 V~~a~~ 109 (127)
T 2a3j_A 104 ITFSET 109 (127)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999964
No 139
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.45 E-value=1e-13 Score=125.79 Aligned_cols=79 Identities=29% Similarity=0.590 Sum_probs=72.7
Q ss_pred CCCCCEEEEccCCCCCcHHHHH----HHhccCCCeeEEEe---cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLK----ELFGKFGALDKVTT---YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~----e~FskfG~I~~V~~---grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
..++++|||+|||.++++++|+ ++|++||.|.+|.. ++++|||||+|.+.++|.+|++.|+|..|.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 5688999999999999999999 99999999999984 4678999999999999999999999999999999999
Q ss_pred ccCCCC
Q 002168 90 FARPAK 95 (957)
Q Consensus 90 ~A~p~~ 95 (957)
|+++..
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 997543
No 140
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.45 E-value=2.2e-13 Score=123.79 Aligned_cols=77 Identities=27% Similarity=0.530 Sum_probs=72.8
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
++++|||+|||..+++++|+++|++||.|.+|++.++ +|+|||+|.+.++|.+|++.|||..++|+.|+|.|++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 3689999999999999999999999999999999877 5799999999999999999999999999999999998
Q ss_pred CCc
Q 002168 170 SQP 172 (957)
Q Consensus 170 ~k~ 172 (957)
.+.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 765
No 141
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.5e-13 Score=123.18 Aligned_cols=82 Identities=33% Similarity=0.574 Sum_probs=74.1
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccC--CCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKF--GALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~Fskf--G~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
++....+.++|||+|||.++|+++|+++|++| |.|.+|+. .+|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34446788999999999999999999999999 99998875 478999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002168 91 ARPAKP 96 (957)
Q Consensus 91 A~p~~~ 96 (957)
+++...
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 986543
No 142
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.3e-13 Score=122.70 Aligned_cols=81 Identities=26% Similarity=0.510 Sum_probs=73.8
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
.....+.++|||+|||.++|+++|+++|++||.|.+|.+. ++||||+|.+.++|.+|++.|++..|.|+.|+|+++++
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 3446788999999999999999999999999999999875 55999999999999999999999999999999999976
Q ss_pred CCC
Q 002168 94 AKP 96 (957)
Q Consensus 94 ~~~ 96 (957)
...
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 143
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.6e-13 Score=122.67 Aligned_cols=79 Identities=28% Similarity=0.513 Sum_probs=73.9
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|.+|++.++ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 356789999999999999999999999999999999987 46999999999999999999999999999999999
Q ss_pred ccCCc
Q 002168 168 LRSQP 172 (957)
Q Consensus 168 ak~k~ 172 (957)
++.+.
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 98765
No 144
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1e-13 Score=123.00 Aligned_cols=76 Identities=28% Similarity=0.372 Sum_probs=70.2
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
..++++|||+|||.++++++|+++|++||.|.+|. +++++|||||+|.+.++|.+|++.|||..|.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46789999999999999999999999999999887 355689999999999999999999999999999999988
Q ss_pred cC
Q 002168 91 AR 92 (957)
Q Consensus 91 A~ 92 (957)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 145
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.4e-13 Score=122.10 Aligned_cols=78 Identities=17% Similarity=0.405 Sum_probs=73.3
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
+....++|||+|||.++++++|+++|++||.|.+|++. +++|||+|.+.++|.+|++.||+..+.|+.|+|.|++.+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 34567899999999999999999999999999999998 7899999999999999999999999999999999998765
No 146
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.5e-13 Score=122.88 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=74.5
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
.....+.++|||+|| ++|+++|+++|++||.|.+|.+.+++|||||+|.+.++|.+|++.|++..|.|+.|+|.|+++
T Consensus 9 ~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 9 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred cCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 344568899999996 999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCC
Q 002168 94 AKP 96 (957)
Q Consensus 94 ~~~ 96 (957)
...
T Consensus 87 ~~~ 89 (97)
T 1x5p_A 87 QPM 89 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 147
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.44 E-value=6.3e-13 Score=122.51 Aligned_cols=79 Identities=30% Similarity=0.600 Sum_probs=72.8
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCccc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQPSR 174 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~~r 174 (957)
...++|||+|||.++++++|+++|++||.|..|+++ +++|||+|.+.++|.+|++.||+..|.|+.|+|.|++.+..+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 457899999999999999999999999999999987 569999999999999999999999999999999999876543
Q ss_pred c
Q 002168 175 R 175 (957)
Q Consensus 175 r 175 (957)
.
T Consensus 87 ~ 87 (103)
T 2dgu_A 87 R 87 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 148
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=126.70 Aligned_cols=78 Identities=22% Similarity=0.417 Sum_probs=67.4
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
......++|||+|||.++++++|+++|++|| |.+|++ ++++|||||+|.+.++|.+|+ .|+|..|.|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3357889999999999999999999999999 999883 346899999999999999999 9999999999999
Q ss_pred ccccCCC
Q 002168 88 IEFARPA 94 (957)
Q Consensus 88 V~~A~p~ 94 (957)
|+++++.
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999754
No 149
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.4e-13 Score=127.45 Aligned_cols=83 Identities=30% Similarity=0.389 Sum_probs=73.8
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCe----eEEE--ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGAL----DKVT--TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I----~~V~--~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
.....++++|||+|||.++|+++|+++|++||.| ..+. +++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3445678999999999999999999999999988 3444 678899999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 002168 88 IEFARPAKP 96 (957)
Q Consensus 88 V~~A~p~~~ 96 (957)
|.|+++...
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 999976543
No 150
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.6e-13 Score=126.44 Aligned_cols=79 Identities=24% Similarity=0.343 Sum_probs=72.8
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCcccc-----Cccccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRG-----NPIKIEFA 91 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~G-----r~I~V~~A 91 (957)
.+..++|||+|||+++|+++|+++|++||+|..|.+... |||||+|.+.++|.+||+.||+..|.| +.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 467899999999999999999999999999999997655 999999999999999999999999999 99999999
Q ss_pred CCCCC
Q 002168 92 RPAKP 96 (957)
Q Consensus 92 ~p~~~ 96 (957)
++...
T Consensus 91 ~~~~~ 95 (108)
T 1x4c_A 91 GPRSP 95 (108)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 86543
No 151
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.44 E-value=8.5e-14 Score=131.44 Aligned_cols=78 Identities=19% Similarity=0.156 Sum_probs=71.9
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCC-CeeEEEe--cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFG-ALDKVTT--YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG-~I~~V~~--grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
.+..++|||+|||+++|+++|+++|++|| +|..|.+ .+++|||||+|.+.++|.+|++.|||..|.|+.|+|++++.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 56778999999999999999999999999 8998885 46899999999999999999999999999999999999864
Q ss_pred C
Q 002168 94 A 94 (957)
Q Consensus 94 ~ 94 (957)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 152
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=126.21 Aligned_cols=75 Identities=28% Similarity=0.562 Sum_probs=71.9
Q ss_pred CceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
++|||+|||.++++++|+++|++||.|.+|.+.++ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.|++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999999999999998 9999999999999999999999999999999999998765
No 153
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.8e-13 Score=124.58 Aligned_cols=81 Identities=26% Similarity=0.452 Sum_probs=75.1
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
....++|||+|||..+++++|+++|++||.|..|++..+ +++|||+|.+.++|.+|++.||+..+.|+.|.|.|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 456789999999999999999999999999999999976 6799999999999999999999999999999999998
Q ss_pred CCccc
Q 002168 170 SQPSR 174 (957)
Q Consensus 170 ~k~~r 174 (957)
.+..+
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76543
No 154
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.2e-13 Score=121.08 Aligned_cols=76 Identities=20% Similarity=0.401 Sum_probs=71.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|.+|++.++ +++|||+|.+.++|.+|++.||+..+.|+.|+|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 456789999999999999999999999999999999876 47899999999999999999999999999999999
Q ss_pred cc
Q 002168 168 LR 169 (957)
Q Consensus 168 ak 169 (957)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 155
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.44 E-value=2.2e-13 Score=124.09 Aligned_cols=78 Identities=22% Similarity=0.473 Sum_probs=70.7
Q ss_pred CCCCCCEEEEccCCC-CCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCC
Q 002168 16 EAPPSSNLWVGNLSA-DTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94 (957)
Q Consensus 16 e~~~s~tLfVgNLP~-svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~ 94 (957)
+..++++|||+|||. ++|+++|+++|++||.|.+|.+ .+|||||+|.+.++|.+|++.|++..+.|+.|+|.++++.
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE--ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 357899999999998 9999999999999999999987 4899999999999999999999999999999999999754
Q ss_pred C
Q 002168 95 K 95 (957)
Q Consensus 95 ~ 95 (957)
.
T Consensus 84 ~ 84 (96)
T 2kvi_A 84 A 84 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 156
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.3e-13 Score=123.23 Aligned_cols=79 Identities=20% Similarity=0.455 Sum_probs=73.7
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEE-EEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF-KFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~V-kIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
..+++|||+|||..+++++|+++|++||.|.++ +++++ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 99887 57999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002168 168 LRSQPS 173 (957)
Q Consensus 168 ak~k~~ 173 (957)
+..+..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987653
No 157
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.44 E-value=6.6e-14 Score=128.87 Aligned_cols=75 Identities=19% Similarity=0.250 Sum_probs=70.3
Q ss_pred CCCCEEEEccCCC------CCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCcccc-C
Q 002168 18 PPSSNLWVGNLSA------DTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRG-N 84 (957)
Q Consensus 18 ~~s~tLfVgNLP~------svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~G-r 84 (957)
..+++|||+|||. ++++++|+++|++||.|.+|+ +++++|||||+|.+.++|.+|++.|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 999999999999999999988 36789999999999999999999999999999 9
Q ss_pred cccccccC
Q 002168 85 PIKIEFAR 92 (957)
Q Consensus 85 ~I~V~~A~ 92 (957)
.|+|.++.
T Consensus 84 ~l~V~~a~ 91 (100)
T 3ns6_A 84 RLFLYTMK 91 (100)
T ss_dssp BCEEEESH
T ss_pred EEEEEECc
Confidence 99999985
No 158
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4e-13 Score=122.94 Aligned_cols=79 Identities=27% Similarity=0.495 Sum_probs=73.8
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC-----CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG-----NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr-----G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
....++|||+|||..+++++|+++|++||.|.+|.+..++ |+|||+|.+.++|.+|++.||+..+.|+.|+|.|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 4567899999999999999999999999999999999875 78999999999999999999999999999999999
Q ss_pred cCCc
Q 002168 169 RSQP 172 (957)
Q Consensus 169 k~k~ 172 (957)
+.+.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8654
No 159
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.6e-13 Score=124.48 Aligned_cols=80 Identities=34% Similarity=0.595 Sum_probs=74.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 456789999999999999999999999999999999876 57999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002168 168 LRSQPS 173 (957)
Q Consensus 168 ak~k~~ 173 (957)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987653
No 160
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.3e-13 Score=127.35 Aligned_cols=81 Identities=22% Similarity=0.290 Sum_probs=72.7
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
....++++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34577899999999999999999999999999998873 3458999999999999999999999999999999999
Q ss_pred ccCCCC
Q 002168 90 FARPAK 95 (957)
Q Consensus 90 ~A~p~~ 95 (957)
+++...
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 987543
No 161
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.44 E-value=2.9e-13 Score=126.26 Aligned_cols=78 Identities=26% Similarity=0.517 Sum_probs=72.3
Q ss_pred CCCCCEEEEccCCCC-CcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCCC
Q 002168 17 APPSSNLWVGNLSAD-TTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAK 95 (957)
Q Consensus 17 ~~~s~tLfVgNLP~s-vTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~~ 95 (957)
...+++|||+|||.+ +|+++|+++|++||.|..|.+ ++|||||+|.+.++|.+|++.|++..|.|+.|+|+++++.+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 445689999999999 999999999999999999988 78999999999999999999999999999999999997544
Q ss_pred C
Q 002168 96 P 96 (957)
Q Consensus 96 ~ 96 (957)
.
T Consensus 102 ~ 102 (110)
T 1wf1_A 102 P 102 (110)
T ss_dssp S
T ss_pred C
Confidence 3
No 162
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3e-13 Score=124.73 Aligned_cols=79 Identities=22% Similarity=0.426 Sum_probs=72.2
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
...+.++|||+|||.++|+++|+++|++|| |.+|.+ ++++|||||+|.+.++|.+|| .|++..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 346789999999999999999999999999 999883 667999999999999999999 99999999999999
Q ss_pred cccCCCCC
Q 002168 89 EFARPAKP 96 (957)
Q Consensus 89 ~~A~p~~~ 96 (957)
.++++...
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99986544
No 163
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.4e-14 Score=129.31 Aligned_cols=79 Identities=22% Similarity=0.462 Sum_probs=71.6
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
...+.++|||+|||.++++++|+++|++||.|..|++ +.++|||||+|.+.++|.+|++.|+|..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3456799999999999999999999999999988873 3458999999999999999999999999999999999
Q ss_pred ccCCC
Q 002168 90 FARPA 94 (957)
Q Consensus 90 ~A~p~ 94 (957)
++++.
T Consensus 84 ~a~~~ 88 (104)
T 1p1t_A 84 NAASE 88 (104)
T ss_dssp ETTCT
T ss_pred eCCCc
Confidence 99754
No 164
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.2e-13 Score=127.01 Aligned_cols=81 Identities=23% Similarity=0.378 Sum_probs=72.7
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I 86 (957)
...+..+.++|||+|||.++|+++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.+++ .|.|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 3444678899999999999999999999999999999883 45789999999999999999999998 8999999
Q ss_pred cccccCCC
Q 002168 87 KIEFARPA 94 (957)
Q Consensus 87 ~V~~A~p~ 94 (957)
+|+++.+.
T Consensus 89 ~V~~a~~~ 96 (116)
T 2cqd_A 89 NVNLAYLG 96 (116)
T ss_dssp EEEESTTT
T ss_pred EEEEcccC
Confidence 99999653
No 165
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=3.9e-13 Score=122.41 Aligned_cols=78 Identities=28% Similarity=0.454 Sum_probs=72.5
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec---------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd---------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V 165 (957)
...++|||+|||.++++++|+++|++||.|..|.+.++ +|+|||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 46789999999999999999999999999999999864 368999999999999999999999999999999
Q ss_pred EEccCCc
Q 002168 166 DFLRSQP 172 (957)
Q Consensus 166 ~~ak~k~ 172 (957)
.+++.+.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998765
No 166
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=7.7e-13 Score=123.76 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=73.6
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
....++|||+|||..+++++|+++|++||.|.+|+++++ +++|||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 456789999999999999999999999999999999987 578999999999999999999999999999999998
Q ss_pred cCCc
Q 002168 169 RSQP 172 (957)
Q Consensus 169 k~k~ 172 (957)
+...
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7554
No 167
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.43 E-value=2.3e-13 Score=129.72 Aligned_cols=82 Identities=20% Similarity=0.452 Sum_probs=73.8
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
.....++++|||+|||.++|+++|+++|++||.|.+|.+ +.++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 344567899999999999999999999999999999983 44589999999999999999999999999999999
Q ss_pred ccccCCCC
Q 002168 88 IEFARPAK 95 (957)
Q Consensus 88 V~~A~p~~ 95 (957)
|.|+.+..
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 99997543
No 168
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.4e-13 Score=126.12 Aligned_cols=82 Identities=28% Similarity=0.407 Sum_probs=73.1
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE--ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT--TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~--~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
....+.++|||+|||.++|+++|+++|++||.|.-+. .++++|||||+|.+.++|.+|++.|++..|.|+.|+|++++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 3467899999999999999999999999999885333 46789999999999999999999999999999999999998
Q ss_pred CCCC
Q 002168 93 PAKP 96 (957)
Q Consensus 93 p~~~ 96 (957)
+...
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6544
No 169
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-13 Score=131.34 Aligned_cols=82 Identities=23% Similarity=0.402 Sum_probs=73.3
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeE--EE------ecCCCcEEEEEeCCHHHHHHHHHHhcCC----c
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK--VT------TYSSRSFAFVYFKRVEDAKAAKDALQGS----D 80 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~--V~------~grskGyAFVeF~s~edA~~AL~~Lng~----~ 80 (957)
........++|||+|||+++||++|+++|++||.|.. |+ +++++|||||+|.+. +|.+|++.|++. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3444578899999999999999999999999999965 66 566899999999999 999999999999 9
Q ss_pred cccCcccccccCCCC
Q 002168 81 FRGNPIKIEFARPAK 95 (957)
Q Consensus 81 I~Gr~I~V~~A~p~~ 95 (957)
|.|+.|+|+++++.+
T Consensus 95 ~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 95 IDGKTINVEFAKGSK 109 (131)
T ss_dssp GGGCCCCCEECCCSC
T ss_pred CCCEEEEEEECCCCC
Confidence 999999999997653
No 170
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.43 E-value=3e-13 Score=124.69 Aligned_cols=81 Identities=26% Similarity=0.437 Sum_probs=74.8
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCC---eEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGG---EQLRV 165 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~G---r~I~V 165 (957)
....++|||+|||..+++++|+++|++||.|..|++.++ +|+|||+|.+.++|.+|++.||+..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345789999999999999999999999999999999988 5899999999999999999999999988 99999
Q ss_pred EEccCCccc
Q 002168 166 DFLRSQPSR 174 (957)
Q Consensus 166 ~~ak~k~~r 174 (957)
.|+..+..+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999877543
No 171
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.3e-13 Score=124.05 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=72.0
Q ss_pred CCCCCEEEEccCCCCCcHHHHH----HHhccCCCeeEEEecCC---CcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLK----ELFGKFGALDKVTTYSS---RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~----e~FskfG~I~~V~~grs---kGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
..+.++|||+|||+++++++|+ ++|++||.|.+|++... +|||||+|.+.++|.+|++.|||..|.|+.|+|+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999999999999999 99999999999995433 8999999999999999999999999999999999
Q ss_pred ccCCCC
Q 002168 90 FARPAK 95 (957)
Q Consensus 90 ~A~p~~ 95 (957)
++++..
T Consensus 86 ~a~~~~ 91 (96)
T 2dgx_A 86 LATGAS 91 (96)
T ss_dssp ECCCSS
T ss_pred EcCCCC
Confidence 997543
No 172
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=2.9e-13 Score=125.07 Aligned_cols=80 Identities=20% Similarity=0.417 Sum_probs=74.8
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-------CCceEEEeCCHHHHHHHHHHh-CCceeCCeEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-------GNTAFVEYSRLEDAAEALKNI-NGRQIGGEQLRV 165 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-------rG~AFVeF~t~edA~kAIe~L-nG~~i~Gr~I~V 165 (957)
....++|||+|||..+++++|+++|++||.|..|+++++ +|+|||+|.+.++|.+|++.| |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 456789999999999999999999999999999999887 689999999999999999999 999999999999
Q ss_pred EEccCCcc
Q 002168 166 DFLRSQPS 173 (957)
Q Consensus 166 ~~ak~k~~ 173 (957)
.|++.+..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987653
No 173
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.4e-13 Score=130.21 Aligned_cols=79 Identities=15% Similarity=0.259 Sum_probs=72.9
Q ss_pred CCCCCceEEcCCCcc-CCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEEEccC
Q 002168 94 AKPSKHLWVGGISQT-VSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNING--RQIGGEQLRVDFLRS 170 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~-vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG--~~i~Gr~I~V~~ak~ 170 (957)
..++++|||+|||++ +++++|+++|++||.|.+|++++.+|+|||+|.+.++|.+|++.|++ ..+.|+.|+|.|++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 456889999999998 99999999999999999999999999999999999999999998864 569999999999976
Q ss_pred Cc
Q 002168 171 QP 172 (957)
Q Consensus 171 k~ 172 (957)
+.
T Consensus 102 ~~ 103 (112)
T 1x4f_A 102 YK 103 (112)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 174
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.43 E-value=1.9e-13 Score=132.55 Aligned_cols=82 Identities=24% Similarity=0.450 Sum_probs=73.8
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
.+..+.++|||+|||.++|+++|+++|++||+|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999999999999998873 446899999999999999999999999999999999
Q ss_pred cccCCCCC
Q 002168 89 EFARPAKP 96 (957)
Q Consensus 89 ~~A~p~~~ 96 (957)
+++++...
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99976543
No 175
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.43 E-value=4.6e-13 Score=119.02 Aligned_cols=77 Identities=23% Similarity=0.455 Sum_probs=71.3
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEee-------cCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLK-------DGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlr-------drG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
..++|||+|||.++++++|+++|++||.|.++.+.. .+|+|||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999875 4679999999999999999999999999999999998
Q ss_pred cCCc
Q 002168 169 RSQP 172 (957)
Q Consensus 169 k~k~ 172 (957)
....
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 176
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-13 Score=120.13 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=64.8
Q ss_pred CCEEEEccCCCCC------cHHHHHHHhccCCCeeEEE----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccC-cccc
Q 002168 20 SSNLWVGNLSADT------TDADLKELFGKFGALDKVT----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGN-PIKI 88 (957)
Q Consensus 20 s~tLfVgNLP~sv------TE~dL~e~FskfG~I~~V~----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr-~I~V 88 (957)
+++|||+|||..+ ++++|+++|++||.|.+|. +++++|||||+|.+.++|.+|++.|||..|.|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 7899999999999999998 346789999999999999999999999999999 8887
Q ss_pred c
Q 002168 89 E 89 (957)
Q Consensus 89 ~ 89 (957)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 4
No 177
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.42 E-value=2.1e-13 Score=121.71 Aligned_cols=76 Identities=29% Similarity=0.509 Sum_probs=69.8
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
..++|||+|||.++++++|+++|++||.|.+|+ +++++|||||+|.+.++|.+|+ .+++..|.|+.|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999887 3456899999999999999999 999999999999999997
Q ss_pred CCC
Q 002168 93 PAK 95 (957)
Q Consensus 93 p~~ 95 (957)
+..
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 643
No 178
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.8e-13 Score=123.72 Aligned_cols=79 Identities=28% Similarity=0.438 Sum_probs=73.8
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|..|.+++++ |+|||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4567899999999999999999999999999999999873 5899999999999999999999999999999999
Q ss_pred ccCCc
Q 002168 168 LRSQP 172 (957)
Q Consensus 168 ak~k~ 172 (957)
++.+.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98765
No 179
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.42 E-value=4.9e-13 Score=125.56 Aligned_cols=80 Identities=29% Similarity=0.468 Sum_probs=74.1
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||.++++++|+++|++||.|.+|++++++ |+|||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4456899999999999999999999999999999999875 6899999999999999999999999999999999
Q ss_pred ccCCcc
Q 002168 168 LRSQPS 173 (957)
Q Consensus 168 ak~k~~ 173 (957)
++.+..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987653
No 180
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.42 E-value=3.2e-13 Score=125.24 Aligned_cols=78 Identities=14% Similarity=0.231 Sum_probs=71.5
Q ss_pred CCCCCCEEEEccCCCCC------cHHHHHHHhccCCCeeEEEe----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccC-
Q 002168 16 EAPPSSNLWVGNLSADT------TDADLKELFGKFGALDKVTT----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGN- 84 (957)
Q Consensus 16 e~~~s~tLfVgNLP~sv------TE~dL~e~FskfG~I~~V~~----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr- 84 (957)
+...+++|||+|||+.+ |+++|+++|++||.|.+|.+ ++++|||||+|.+.++|.+|++.|+|..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34568999999999999 88999999999999999883 46789999999999999999999999999999
Q ss_pred cccccccCC
Q 002168 85 PIKIEFARP 93 (957)
Q Consensus 85 ~I~V~~A~p 93 (957)
.|+|.++.+
T Consensus 91 ~l~V~~a~~ 99 (105)
T 2nlw_A 91 TFRVNLFTD 99 (105)
T ss_dssp EEEEECSCC
T ss_pred eEEEEEcch
Confidence 999999864
No 181
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=3e-13 Score=124.53 Aligned_cols=81 Identities=22% Similarity=0.439 Sum_probs=72.2
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
.....+.++|||+|||.++++++|+++|++|| |.+|++ ++++|||||+|.+.++|.+|+ .|++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 33456789999999999999999999999997 888872 456899999999999999999 9999999999999
Q ss_pred ccccCCCCC
Q 002168 88 IEFARPAKP 96 (957)
Q Consensus 88 V~~A~p~~~ 96 (957)
|.++++...
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999986544
No 182
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.42 E-value=2.3e-13 Score=125.93 Aligned_cols=78 Identities=33% Similarity=0.483 Sum_probs=71.5
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
....+.++|||+|||..+|+++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999998873 3568999999999999999999999999999999999
Q ss_pred ccC
Q 002168 90 FAR 92 (957)
Q Consensus 90 ~A~ 92 (957)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 183
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.8e-13 Score=120.79 Aligned_cols=79 Identities=29% Similarity=0.521 Sum_probs=72.6
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCCC
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAK 95 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~~ 95 (957)
...+.++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|.+|++.|++..|.|+.|+|.++++..
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 35788999999999999999999999999999999875 5599999999999999999999999999999999997654
Q ss_pred C
Q 002168 96 P 96 (957)
Q Consensus 96 ~ 96 (957)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 184
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.42 E-value=5.3e-13 Score=124.50 Aligned_cols=89 Identities=24% Similarity=0.448 Sum_probs=78.8
Q ss_pred ccCcccccccCC------CCCCCceEEcCCCcc-CCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhC
Q 002168 82 RGNPIKIEFARP------AKPSKHLWVGGISQT-VSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNIN 154 (957)
Q Consensus 82 ~Gr~I~V~~A~p------~~~sr~LyVgNLP~~-vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~Ln 154 (957)
.|..|++..+.. ....++|||+||+.. +++++|+++|++||.|.+|.+ .+++|||+|.+.++|.+|++.||
T Consensus 6 ~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~ 83 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGEN 83 (110)
T ss_dssp CSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHT
T ss_pred CCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcC
Confidence 466777776642 334589999999999 999999999999999999998 68999999999999999999999
Q ss_pred CceeCCeEEEEEEccCCc
Q 002168 155 GRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 155 G~~i~Gr~I~V~~ak~k~ 172 (957)
+..++|+.|+|.|++...
T Consensus 84 g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 84 GRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TCEETTEECCEEESCCCC
T ss_pred CCEECCeEEEEEECCCCC
Confidence 999999999999997554
No 185
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.3e-13 Score=126.46 Aligned_cols=77 Identities=21% Similarity=0.354 Sum_probs=70.4
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
......++|||+|||+++|+++|+++|++||.|.+|.+ ++++|||||+|.+.++|.+|++ +++..|.|+.|.|.
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 44567899999999999999999999999999998883 5589999999999999999996 99999999999999
Q ss_pred ccC
Q 002168 90 FAR 92 (957)
Q Consensus 90 ~A~ 92 (957)
++.
T Consensus 85 ~~~ 87 (103)
T 1s79_A 85 FKD 87 (103)
T ss_dssp EHH
T ss_pred Ech
Confidence 874
No 186
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.3e-13 Score=125.66 Aligned_cols=83 Identities=24% Similarity=0.373 Sum_probs=73.6
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I 86 (957)
...+..+.++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+||+. ++..|.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 3445678899999999999999999999999999998883 44679999999999999999977 9999999999
Q ss_pred cccccCCCCC
Q 002168 87 KIEFARPAKP 96 (957)
Q Consensus 87 ~V~~A~p~~~ 96 (957)
+|.++.+...
T Consensus 88 ~V~~a~~~~~ 97 (105)
T 2dh8_A 88 DPKPCTPRGM 97 (105)
T ss_dssp BCCCSCCSSC
T ss_pred EEEEccCCCC
Confidence 9999976543
No 187
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=6.7e-13 Score=121.20 Aligned_cols=79 Identities=24% Similarity=0.450 Sum_probs=73.2
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+|++ ||+..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999876 5799999999999999998 999999999999999
Q ss_pred ccCCcc
Q 002168 168 LRSQPS 173 (957)
Q Consensus 168 ak~k~~ 173 (957)
+..+..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987653
No 188
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=6.8e-13 Score=119.65 Aligned_cols=77 Identities=34% Similarity=0.573 Sum_probs=72.1
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
....++|||+|||..+++++|+++|++||.|.+|.+.++ +|||+|.+.++|.+|++.||+..+.|+.|+|.+++.+.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 456789999999999999999999999999999999854 99999999999999999999999999999999998764
No 189
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.41 E-value=6.6e-13 Score=128.71 Aligned_cols=81 Identities=28% Similarity=0.410 Sum_probs=74.6
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+||+.++++++|+++|++||.|++|+++++ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 455789999999999999999999999999999999977 46899999999999999999999999999999999
Q ss_pred ccCCccc
Q 002168 168 LRSQPSR 174 (957)
Q Consensus 168 ak~k~~r 174 (957)
++.+..+
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 190
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.9e-13 Score=125.66 Aligned_cols=78 Identities=23% Similarity=0.402 Sum_probs=73.4
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
....++|||+||+.++++++|+++|++||.|.+|++.++ +|+|||+|.+.++|++|++.|||..++|+.|+|.+++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 456789999999999999999999999999999999987 6899999999999999999999999999999999987
Q ss_pred CC
Q 002168 170 SQ 171 (957)
Q Consensus 170 ~k 171 (957)
.+
T Consensus 106 ~~ 107 (109)
T 2err_A 106 AR 107 (109)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 191
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.8e-13 Score=123.59 Aligned_cols=79 Identities=27% Similarity=0.444 Sum_probs=70.7
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCC-eeEEEecCCCcEEEEEeCCHHHHHHHHHHhcC-CccccCcccccccCCC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGA-LDKVTTYSSRSFAFVYFKRVEDAKAAKDALQG-SDFRGNPIKIEFARPA 94 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~-I~~V~~grskGyAFVeF~s~edA~~AL~~Lng-~~I~Gr~I~V~~A~p~ 94 (957)
....++|||+|||.++|+++|+++|++||. |..+.. .++|||||+|.+.++|.+|++.|++ ..|.|+.|+|+|+++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 467899999999999999999999999999 555443 4789999999999999999999999 9999999999999765
Q ss_pred CC
Q 002168 95 KP 96 (957)
Q Consensus 95 ~~ 96 (957)
..
T Consensus 84 ~~ 85 (93)
T 2cqh_A 84 KL 85 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 192
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.41 E-value=3.3e-13 Score=122.02 Aligned_cols=77 Identities=26% Similarity=0.383 Sum_probs=71.9
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
....++|||+|||..+++++|+++|++||.|.+|++.++ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 455789999999999999999999999999999999987 478999999999999999999999999999999987
Q ss_pred cC
Q 002168 169 RS 170 (957)
Q Consensus 169 k~ 170 (957)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 193
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=8.4e-13 Score=118.57 Aligned_cols=77 Identities=23% Similarity=0.469 Sum_probs=72.1
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
....++|||+|||.++++++|+++|++||.|.+|++.+ ++|||+|.+.++|.+|++.||+..+.|+.|+|.+++...
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 45678999999999999999999999999999999985 499999999999999999999999999999999998664
No 194
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.5e-13 Score=120.99 Aligned_cols=77 Identities=34% Similarity=0.484 Sum_probs=71.5
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|.+|++.++ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 455789999999999999999999999999999999876 36899999999999999999999999999999999
Q ss_pred ccC
Q 002168 168 LRS 170 (957)
Q Consensus 168 ak~ 170 (957)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 195
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5.9e-13 Score=122.70 Aligned_cols=80 Identities=29% Similarity=0.404 Sum_probs=74.4
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|.+|.+++++ |+|||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4567899999999999999999999999999999998863 6999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002168 168 LRSQPS 173 (957)
Q Consensus 168 ak~k~~ 173 (957)
+..+..
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 987653
No 196
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.41 E-value=5.3e-13 Score=124.83 Aligned_cols=77 Identities=29% Similarity=0.489 Sum_probs=72.9
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
....++|||+|||.++++++|+++|++||.|.+|.+. +|+|||+|.+.++|.+|++.|||..++|+.|+|.|++.+.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 4567899999999999999999999999999999998 8999999999999999999999999999999999998764
No 197
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.9e-13 Score=123.83 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=70.8
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeE-EE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK-VT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~-V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
.+....++|||+|||+++|+++|+++|++||.|.. |+ +++++|||||+|.+.++|.+||+. ++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 34567899999999999999999999999999986 65 467899999999999999999966 999999999999
Q ss_pred cccCCC
Q 002168 89 EFARPA 94 (957)
Q Consensus 89 ~~A~p~ 94 (957)
.++.+.
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 988643
No 198
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=1.7e-13 Score=122.78 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=71.3
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
.+.+++|||+|||+++++++|+++|++| .|.+|++.+++|||||+|.+.++|.+|++.|+|..+.|+.|+|+++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3568999999999999999999999999 999888778999999999999999999999999999999999999853
No 199
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=8e-13 Score=122.91 Aligned_cols=79 Identities=29% Similarity=0.533 Sum_probs=73.6
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec---CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd---rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
....++|||+|||.++++++|+++|++||.|..|++..+ +++|||+|.+.++|++|++.||+..|.|+.|+|.|++.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 456789999999999999999999999999999999876 56999999999999999999999999999999999987
Q ss_pred Cc
Q 002168 171 QP 172 (957)
Q Consensus 171 k~ 172 (957)
..
T Consensus 99 ~~ 100 (109)
T 1x4a_A 99 GR 100 (109)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 200
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.3e-13 Score=121.06 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=71.2
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCC-EeEEEEeecCCceEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEEEccCC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGN-IEDFKFLKDGNTAFVEYSRLEDAAEALKNING-RQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~-I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG-~~i~Gr~I~V~~ak~k 171 (957)
....++|||+|||.++++++|+++|++||. |..+.+ ..+|+|||+|.+.++|.+|++.||| ..++|+.|+|.|++.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 456789999999999999999999999999 555554 6689999999999999999999999 9999999999999876
Q ss_pred cc
Q 002168 172 PS 173 (957)
Q Consensus 172 ~~ 173 (957)
..
T Consensus 84 ~~ 85 (93)
T 2cqh_A 84 KL 85 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 201
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.41 E-value=2.3e-13 Score=121.16 Aligned_cols=76 Identities=32% Similarity=0.481 Sum_probs=68.1
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
.+..+.++|||+|||+++++++|+++|++||.|.+|+. ++++|||||+|.+.++|.+|+ ++++..|.|+.|+|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEE
Confidence 34578899999999999999999999999999998882 556899999999999999999 66888999999999
Q ss_pred ccc
Q 002168 89 EFA 91 (957)
Q Consensus 89 ~~A 91 (957)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 202
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.1e-13 Score=123.91 Aligned_cols=80 Identities=33% Similarity=0.611 Sum_probs=74.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||.++++++|+++|++||.|..|+++++ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999886 47999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002168 168 LRSQPS 173 (957)
Q Consensus 168 ak~k~~ 173 (957)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987653
No 203
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.40 E-value=4.8e-13 Score=132.47 Aligned_cols=80 Identities=30% Similarity=0.439 Sum_probs=73.4
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
..+.++|||+|||.++|+++|+++|++||.|..|++ +.++|||||+|.+.++|.+||+.|++..|.|+.|+|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 457899999999999999999999999999998884 55679999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002168 91 ARPAKP 96 (957)
Q Consensus 91 A~p~~~ 96 (957)
+++...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 986544
No 204
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=4.4e-13 Score=123.26 Aligned_cols=79 Identities=25% Similarity=0.402 Sum_probs=73.6
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|..|.+..+ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999876 57999999999999999999999999999999999
Q ss_pred ccCCc
Q 002168 168 LRSQP 172 (957)
Q Consensus 168 ak~k~ 172 (957)
++...
T Consensus 90 a~~~~ 94 (103)
T 2dnm_A 90 ARYGR 94 (103)
T ss_dssp CSSCC
T ss_pred CCcCC
Confidence 98654
No 205
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=3.5e-13 Score=123.62 Aligned_cols=81 Identities=42% Similarity=0.601 Sum_probs=72.5
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE---ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT---TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~---~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
...+.++|||+|||.++|+++|+++|++|+.|.-+. +++++|||||+|.+.++|.+|++.|++..|.|+.|+|+|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 357889999999999999999999999998766555 45678999999999999999999999999999999999998
Q ss_pred CCCC
Q 002168 93 PAKP 96 (957)
Q Consensus 93 p~~~ 96 (957)
+...
T Consensus 91 ~~~~ 94 (102)
T 2fc8_A 91 PKGE 94 (102)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6544
No 206
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=2.1e-13 Score=124.22 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=69.8
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
.....++|||+|||.++++++|+++|++||.|..++ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 346679999999999999999999999999986332 35578999999999999999999999999999999999
Q ss_pred ccCC
Q 002168 90 FARP 93 (957)
Q Consensus 90 ~A~p 93 (957)
+++.
T Consensus 91 ~a~~ 94 (98)
T 2cqp_A 91 LGSG 94 (98)
T ss_dssp ESSC
T ss_pred EcCC
Confidence 9864
No 207
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.40 E-value=2.5e-12 Score=118.42 Aligned_cols=78 Identities=28% Similarity=0.532 Sum_probs=69.2
Q ss_pred CCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCCC
Q 002168 219 PPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 298 (957)
Q Consensus 219 ~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~~ 298 (957)
.+.+.|||++++. .+++++|+++|+.||.|.+|+++ ++||||+|.+.++|.+|++.|||..|.|+.|+|.|++.+..
T Consensus 9 ~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 9 AKVKVLFVRNLAN-TVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCEEEECCCT-TCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 3456677777764 69999999999999999999998 77999999999999999999999999999999999976544
Q ss_pred C
Q 002168 299 P 299 (957)
Q Consensus 299 p 299 (957)
.
T Consensus 86 ~ 86 (103)
T 2dgu_A 86 K 86 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 208
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=3.5e-13 Score=121.15 Aligned_cols=80 Identities=13% Similarity=0.181 Sum_probs=71.5
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
......++|||+|||+++|+++|+++|++| .|.+|+ .++++|||||+|.+.++|.+|++ +++..|.|+.|+|.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 345678999999999999999999999999 888877 34568999999999999999998 99999999999999
Q ss_pred ccCCCCC
Q 002168 90 FARPAKP 96 (957)
Q Consensus 90 ~A~p~~~ 96 (957)
++.+...
T Consensus 83 ~a~~~~~ 89 (91)
T 2dgw_A 83 REKSGPS 89 (91)
T ss_dssp EESSCCC
T ss_pred ECCcCCC
Confidence 9976543
No 209
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.40 E-value=8.9e-13 Score=120.73 Aligned_cols=76 Identities=20% Similarity=0.356 Sum_probs=71.5
Q ss_pred CCCCCceEEcCCCc-cCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 94 AKPSKHLWVGGISQ-TVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 94 ~~~sr~LyVgNLP~-~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
...+++|||+||+. .+++++|+++|++||.|.+|++. +|+|||+|.+.++|.+|++.|||..++|+.|+|.+++.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 45689999999998 99999999999999999999985 789999999999999999999999999999999998764
No 210
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=2.8e-13 Score=127.23 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=73.2
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
..++|||+|||..+++++|+++|++||.|..|.+.+.+++|||+|.+.++|.+|++.|||..+.|+.|+|.|+....
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999997643
No 211
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.40 E-value=5e-13 Score=124.37 Aligned_cols=78 Identities=27% Similarity=0.449 Sum_probs=72.9
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
...++|||+|||..+++++|+++|++||.|.+|.++.+ +|+|||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45678999999999999999999999999999999877 489999999999999999999999999999999999
Q ss_pred cCCc
Q 002168 169 RSQP 172 (957)
Q Consensus 169 k~k~ 172 (957)
..+.
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 8664
No 212
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.40 E-value=4.6e-13 Score=120.34 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=73.6
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
....++|||+|||..+++++|+++|++||.|..|++.++ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 456789999999999999999999999999999999975 5789999999999999999999999999999999997
Q ss_pred CCc
Q 002168 170 SQP 172 (957)
Q Consensus 170 ~k~ 172 (957)
...
T Consensus 85 ~~~ 87 (92)
T 2dgv_A 85 NAS 87 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 213
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.7e-13 Score=128.54 Aligned_cols=76 Identities=22% Similarity=0.401 Sum_probs=70.5
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
....++|||+|||.++++++|+++|++||.|..|++ ++++|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 456799999999999999999999999999999883 567899999999999999999 9999999999999999
Q ss_pred cCC
Q 002168 91 ARP 93 (957)
Q Consensus 91 A~p 93 (957)
+++
T Consensus 101 a~~ 103 (114)
T 2cq4_A 101 SQA 103 (114)
T ss_dssp HHH
T ss_pred cCC
Confidence 853
No 214
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.40 E-value=3e-13 Score=126.55 Aligned_cols=82 Identities=24% Similarity=0.433 Sum_probs=68.2
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
.++..+.++|||+|||.++|+++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.+ +..|.|+.|+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 344678899999999999999999999999999999883 567899999999999999999665 6889999999
Q ss_pred ccccCCCCC
Q 002168 88 IEFARPAKP 96 (957)
Q Consensus 88 V~~A~p~~~ 96 (957)
|.++.+...
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999976543
No 215
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.40 E-value=2.8e-13 Score=117.26 Aligned_cols=69 Identities=28% Similarity=0.476 Sum_probs=64.1
Q ss_pred EEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 22 NLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 22 tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
+|||+|||.++++++|+++|++||.|.+|. +++++|||||+|.+.++|.+|++ +++..|.|+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999888 35568999999999999999995 9999999999999875
No 216
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.3e-13 Score=124.49 Aligned_cols=80 Identities=23% Similarity=0.410 Sum_probs=72.2
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCC-eeEEEec-------CCCcEEEEEeCCHHHHHHHHHHhc--CCccccCcc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGA-LDKVTTY-------SSRSFAFVYFKRVEDAKAAKDALQ--GSDFRGNPI 86 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~-I~~V~~g-------rskGyAFVeF~s~edA~~AL~~Ln--g~~I~Gr~I 86 (957)
..+.++|||+|||.++|+++|+++|.+||. |.+|.+. +++|||||+|.+.++|.+|++.|+ +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456899999999999999999999999998 9998843 689999999999999999999896 589999999
Q ss_pred cccccCCCCC
Q 002168 87 KIEFARPAKP 96 (957)
Q Consensus 87 ~V~~A~p~~~ 96 (957)
+|.|+++...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 217
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.39 E-value=5.3e-13 Score=127.15 Aligned_cols=79 Identities=33% Similarity=0.481 Sum_probs=72.5
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
...++++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3567899999999999999999999999999998883 45789999999999999999999999999999999999
Q ss_pred cCCC
Q 002168 91 ARPA 94 (957)
Q Consensus 91 A~p~ 94 (957)
+.+.
T Consensus 111 a~~~ 114 (124)
T 2kt5_A 111 VASQ 114 (124)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 9754
No 218
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=1e-12 Score=122.12 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=74.1
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhC------CceeCCe
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNIN------GRQIGGE 161 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~Ln------G~~i~Gr 161 (957)
....++|||+|||..+++++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+|++.|| +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 456789999999999999999999999999999999866 5799999999999999999999 9999999
Q ss_pred EEEEEEccCCcc
Q 002168 162 QLRVDFLRSQPS 173 (957)
Q Consensus 162 ~I~V~~ak~k~~ 173 (957)
.|+|.|+..+..
T Consensus 92 ~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 QLKVDLAVTRDE 103 (111)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987653
No 219
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=8.6e-13 Score=120.89 Aligned_cols=80 Identities=33% Similarity=0.468 Sum_probs=71.4
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeE-----EEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDK-----VTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~-----V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
+..+.++|||+|||.++|+++|+++|++||.|.. ..+++++|||||+|.+.++|.+|++ |++..|.|+.|+|.+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 3567899999999999999999999999997643 3368899999999999999999997 999999999999999
Q ss_pred cCCCCC
Q 002168 91 ARPAKP 96 (957)
Q Consensus 91 A~p~~~ 96 (957)
+++...
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 976543
No 220
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.1e-12 Score=122.91 Aligned_cols=79 Identities=20% Similarity=0.416 Sum_probs=69.7
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCcc--------
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDF-------- 81 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I-------- 81 (957)
.+..+.++|||+|||.++|+++|+++|++||.|..|++ ++++|||||+|.+.++|.+|++.|||..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999998883 45689999999999999999999999999
Q ss_pred ccCcccccccCC
Q 002168 82 RGNPIKIEFARP 93 (957)
Q Consensus 82 ~Gr~I~V~~A~p 93 (957)
.++.|.|.|+++
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 466788888764
No 221
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.39 E-value=3e-13 Score=156.07 Aligned_cols=136 Identities=21% Similarity=0.326 Sum_probs=99.6
Q ss_pred HHHHhccCCCeeEEE--------ecCCCcEE-----EEEeCCHHHHHHHHHHhcCCccccC---------------cccc
Q 002168 37 LKELFGKFGALDKVT--------TYSSRSFA-----FVYFKRVEDAKAAKDALQGSDFRGN---------------PIKI 88 (957)
Q Consensus 37 L~e~FskfG~I~~V~--------~grskGyA-----FVeF~s~edA~~AL~~Lng~~I~Gr---------------~I~V 88 (957)
|.++|..+|+|..|. .....+|+ |+.|....++..++..++......+ .+.+
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 788999999987763 11233444 7788776554444322221111111 1111
Q ss_pred cc-----cCCCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCce
Q 002168 89 EF-----ARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQ 157 (957)
Q Consensus 89 ~~-----A~p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~ 157 (957)
.. .......++|||+||+..+|+++|.++|++||.|..|.|+.+ +|||||+|.+.++|.+||+.|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 00 011234589999999999999999999999999999999876 5899999999999999999999999
Q ss_pred eCCeEEEEEEccCCc
Q 002168 158 IGGEQLRVDFLRSQP 172 (957)
Q Consensus 158 i~Gr~I~V~~ak~k~ 172 (957)
|.|+.|.|.|+....
T Consensus 169 i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 169 IDGRRVLVDVERGRT 183 (437)
T ss_pred ECCEEEEEEEeCCCC
Confidence 999999999998654
No 222
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.39 E-value=3.6e-13 Score=123.51 Aligned_cols=77 Identities=21% Similarity=0.398 Sum_probs=69.8
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCC--EeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCc----eeCCe
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGN--IEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGR----QIGGE 161 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~--I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~----~i~Gr 161 (957)
.....+|||+|||+++|+++|+++|++||. |.+|++++| +|+|||+|.+.++|.+|++.|||. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 455789999999999999999999999995 678998877 579999999999999999999997 58999
Q ss_pred EEEEEEccC
Q 002168 162 QLRVDFLRS 170 (957)
Q Consensus 162 ~I~V~~ak~ 170 (957)
.|.|+|++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999874
No 223
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.39 E-value=6.2e-13 Score=121.56 Aligned_cols=77 Identities=21% Similarity=0.440 Sum_probs=71.6
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeE--------EEEeec------CCceEEEeCCHHHHHHHHHHhCCcee
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIED--------FKFLKD------GNTAFVEYSRLEDAAEALKNINGRQI 158 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~--------VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i 158 (957)
+....++|||+|||.++++++|+++|++||.|.. |++.++ +|+|||+|.+.++|.+|++.|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4566899999999999999999999999999999 999887 36899999999999999999999999
Q ss_pred CCeEEEEEEcc
Q 002168 159 GGEQLRVDFLR 169 (957)
Q Consensus 159 ~Gr~I~V~~ak 169 (957)
.|+.|+|.+++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 224
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.39 E-value=7.6e-13 Score=127.84 Aligned_cols=77 Identities=34% Similarity=0.533 Sum_probs=70.7
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
....+.++|||+|||.++|+++|+++|++||.|..|++ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44568999999999999999999999999999999983 557999999999999999999999999999999999
Q ss_pred ccc
Q 002168 89 EFA 91 (957)
Q Consensus 89 ~~A 91 (957)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 885
No 225
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=8.5e-13 Score=121.70 Aligned_cols=78 Identities=21% Similarity=0.451 Sum_probs=72.1
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
....++|||+|||.++++++|+++|+.|| |.+|.++++ +|+|||+|.+.++|.+|+ .||+..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45678999999999999999999999999 999999876 568999999999999999 999999999999999
Q ss_pred EccCCcc
Q 002168 167 FLRSQPS 173 (957)
Q Consensus 167 ~ak~k~~ 173 (957)
++..+..
T Consensus 90 ~a~~~~~ 96 (104)
T 1wi8_A 90 VADQAQD 96 (104)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987653
No 226
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.39 E-value=6e-13 Score=124.33 Aligned_cols=82 Identities=24% Similarity=0.485 Sum_probs=74.9
Q ss_pred cCCCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002168 91 ARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (957)
Q Consensus 91 A~p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~ 164 (957)
.+.....++|||+|||..+++++|+++|++||.|..|+++++ +|+|||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344567789999999999999999999999999999999977 46899999999999999999999999999999
Q ss_pred EEEccCCc
Q 002168 165 VDFLRSQP 172 (957)
Q Consensus 165 V~~ak~k~ 172 (957)
|.+++.+.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99987653
No 227
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=4.8e-13 Score=123.53 Aligned_cols=78 Identities=23% Similarity=0.500 Sum_probs=72.3
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
...++|||+|||..+++++|+++|++||.|.+|.+..+ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 34678999999999999999999999999999999977 468999999999999999999999999999999998
Q ss_pred cCCc
Q 002168 169 RSQP 172 (957)
Q Consensus 169 k~k~ 172 (957)
..+.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7653
No 228
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.39 E-value=1.6e-13 Score=124.05 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
..+.++|||+|||+++|+++|+++|++||.|..++ .++++|||||+|.+.++|.+|++.|++..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 45579999999999999999999999999986433 345789999999999999999999999999999999998
Q ss_pred cC
Q 002168 91 AR 92 (957)
Q Consensus 91 A~ 92 (957)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 229
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.39 E-value=3.8e-13 Score=130.83 Aligned_cols=83 Identities=34% Similarity=0.558 Sum_probs=74.9
Q ss_pred CCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 14 DKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 14 ~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
..+..+.++|||+|||.++|+++|+++|++||.|..|+ +++++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456789999999999999999999999999999888 345789999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 002168 88 IEFARPAKP 96 (957)
Q Consensus 88 V~~A~p~~~ 96 (957)
|.|+++...
T Consensus 121 V~~a~~~~~ 129 (135)
T 2lea_A 121 VQMARYGRP 129 (135)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999986544
No 230
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.39 E-value=8.5e-13 Score=122.07 Aligned_cols=76 Identities=26% Similarity=0.426 Sum_probs=71.6
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
....++|||+|||..+++++|+++|++||.|.+|+++.+ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 456789999999999999999999999999999999977 578999999999999999999999999999999997
Q ss_pred c
Q 002168 169 R 169 (957)
Q Consensus 169 k 169 (957)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 231
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=4.3e-13 Score=125.62 Aligned_cols=79 Identities=27% Similarity=0.386 Sum_probs=71.7
Q ss_pred CCCCCEEEEccCCCCCcHHHHH---HHhccCCCeeEEEec---------CCCcEEEEEeCCHHHHHHHHHHhcCCccccC
Q 002168 17 APPSSNLWVGNLSADTTDADLK---ELFGKFGALDKVTTY---------SSRSFAFVYFKRVEDAKAAKDALQGSDFRGN 84 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~---e~FskfG~I~~V~~g---------rskGyAFVeF~s~edA~~AL~~Lng~~I~Gr 84 (957)
....++|||+|||+++++++|+ ++|++||.|.+|++. +++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4568899999999999999999 999999999988832 3458999999999999999999999999999
Q ss_pred cccccccCCCC
Q 002168 85 PIKIEFARPAK 95 (957)
Q Consensus 85 ~I~V~~A~p~~ 95 (957)
.|+|.|+.+..
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999997654
No 232
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=6e-13 Score=121.36 Aligned_cols=79 Identities=20% Similarity=0.507 Sum_probs=73.4
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEe-EEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeE----
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIE-DFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQ---- 162 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~-~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~---- 162 (957)
....++|||+|||.++++++|+++|++||.|. +|++++++ |+|||+|.+.++|++|++.|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45689999999999999999999999999999 99999875 78999999999999999999999999999
Q ss_pred EEEEEccCCc
Q 002168 163 LRVDFLRSQP 172 (957)
Q Consensus 163 I~V~~ak~k~ 172 (957)
|+|.|++...
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987653
No 233
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.38 E-value=4.8e-13 Score=126.04 Aligned_cols=76 Identities=28% Similarity=0.483 Sum_probs=70.5
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||.++++++|+++|++||.|.+|+++++ +|+|||+|.+.++|++|++.|||..++|+.|+|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 445689999999999999999999999999999999876 57999999999999999999999999999999998
Q ss_pred cc
Q 002168 168 LR 169 (957)
Q Consensus 168 ak 169 (957)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 234
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.9e-13 Score=127.29 Aligned_cols=79 Identities=25% Similarity=0.430 Sum_probs=70.9
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
....++|||+|||.++|+++|+++|++||.|..|++ ++++|||||+|.+.++|.+||+. ++..|.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 345799999999999999999999999999998873 55789999999999999999966 99999999999999
Q ss_pred cCCCCC
Q 002168 91 ARPAKP 96 (957)
Q Consensus 91 A~p~~~ 96 (957)
+.+...
T Consensus 103 a~~~~~ 108 (116)
T 1x4b_A 103 AVAREE 108 (116)
T ss_dssp CSSCCC
T ss_pred CCCCcc
Confidence 976544
No 235
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.9e-12 Score=121.67 Aligned_cols=78 Identities=24% Similarity=0.366 Sum_probs=72.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|.+|+|+++ +++|||+|.+.++|++|++.+++ .|.|+.|+|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 456789999999999999999999999999999999887 46999999999999999999998 89999999999
Q ss_pred ccCCc
Q 002168 168 LRSQP 172 (957)
Q Consensus 168 ak~k~ 172 (957)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97654
No 236
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=5.4e-13 Score=126.52 Aligned_cols=77 Identities=19% Similarity=0.379 Sum_probs=71.2
Q ss_pred CCCCCCEEEE--ccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCcc-----ccCcccc
Q 002168 16 EAPPSSNLWV--GNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDF-----RGNPIKI 88 (957)
Q Consensus 16 e~~~s~tLfV--gNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I-----~Gr~I~V 88 (957)
...++++||| +||++++||++|+++|++||.|.+|.+..+||||||+|.+.++|.+|++.|||..| .|+.|.|
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 3567899999 77999999999999999999999999888899999999999999999999999988 6888999
Q ss_pred cccC
Q 002168 89 EFAR 92 (957)
Q Consensus 89 ~~A~ 92 (957)
.+++
T Consensus 101 ~~a~ 104 (114)
T 2cq2_A 101 NFVE 104 (114)
T ss_dssp EEES
T ss_pred Eecc
Confidence 8875
No 237
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.38 E-value=1.1e-12 Score=119.13 Aligned_cols=79 Identities=22% Similarity=0.520 Sum_probs=73.1
Q ss_pred CCCCCceEEcCCCccCCHHHHH----HhhcccCCEeEEEEee---cCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELE----EGFLKFGNIEDFKFLK---DGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~----elFskfG~I~~VkIlr---drG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
..++++|||+|||.++++++|+ ++|++||.|.+|.+.+ .+|+|||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999 9999999999999884 47999999999999999999999999999999999
Q ss_pred EccCCc
Q 002168 167 FLRSQP 172 (957)
Q Consensus 167 ~ak~k~ 172 (957)
|++.+.
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 998764
No 238
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.2e-12 Score=117.61 Aligned_cols=77 Identities=35% Similarity=0.572 Sum_probs=72.1
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
....++|||+|| ++++++|+++|++||.|.+|.+.+.+|+|||+|.+.++|.+|++.||+..+.|+.|+|.|++.+.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 345789999996 89999999999999999999999889999999999999999999999999999999999997764
No 239
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=7.8e-13 Score=125.40 Aligned_cols=79 Identities=22% Similarity=0.389 Sum_probs=73.2
Q ss_pred CCCCCceEE--cCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCcee-----CCeEEEEE
Q 002168 94 AKPSKHLWV--GGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQI-----GGEQLRVD 166 (957)
Q Consensus 94 ~~~sr~LyV--gNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i-----~Gr~I~V~ 166 (957)
..++++||| +||+..+++++|+++|++||.|.+|.+..++|||||+|.+.++|++|++.|||+.+ .|+.|.|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 356789999 77999999999999999999999999999999999999999999999999999988 68999999
Q ss_pred EccCCc
Q 002168 167 FLRSQP 172 (957)
Q Consensus 167 ~ak~k~ 172 (957)
|+....
T Consensus 102 ~a~~~p 107 (114)
T 2cq2_A 102 FVEKVQ 107 (114)
T ss_dssp EESCCC
T ss_pred ecccCc
Confidence 987554
No 240
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.37 E-value=1.1e-12 Score=131.28 Aligned_cols=136 Identities=18% Similarity=0.250 Sum_probs=70.5
Q ss_pred EEeCCHHHHHHHHHHhCCceeC--CeEEEEEEccCCccccCCCCCCCCCCCCCccCCCCCCCCCcccccCCCCCCcCCCC
Q 002168 138 VEYSRLEDAAEALKNINGRQIG--GEQLRVDFLRSQPSRREQWPNSHDARDGPIIGRGTGFSDNHSAYKRSHPQSSVGRN 215 (957)
Q Consensus 138 VeF~t~edA~kAIe~LnG~~i~--Gr~I~V~~ak~k~~rr~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (957)
.+|++.+||..|+..+++.... |+.+.+.+........ ....... .. .......
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~--~~~~~~s-------------~~---------~~~~~~~ 66 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHS--YERVRNE-------------DD---------DELEPGP 66 (165)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccC--ccccccC-------------CC---------CCCCCCC
Confidence 7899999999999999887554 5555555432111000 0000000 00 0000001
Q ss_pred CCCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEE
Q 002168 216 RDGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 289 (957)
Q Consensus 216 ~~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~s------rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~ 289 (957)
....+.++|||++++. .+++++|+++|+.||.|..|.++.. +|||||+|.+.++|.+||+.|||..|.|+.|.
T Consensus 67 ~~~~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHE-EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCC-CEEEEEESCCT-TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 1234467788888774 6999999999999999999999854 68999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 002168 290 IMFSSSELA 298 (957)
Q Consensus 290 V~~A~~~~~ 298 (957)
|.|+..+..
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999976543
No 241
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.1e-12 Score=122.75 Aligned_cols=79 Identities=23% Similarity=0.450 Sum_probs=73.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEe--------EEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIE--------DFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIG 159 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~--------~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~ 159 (957)
....++|||+|||..+++++|+++|++||.|. .|++..+ +|+|||+|.+.++|.+|++.||+..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999999998 6998877 579999999999999999999999999
Q ss_pred CeEEEEEEccCCc
Q 002168 160 GEQLRVDFLRSQP 172 (957)
Q Consensus 160 Gr~I~V~~ak~k~ 172 (957)
|+.|+|.+++.+.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999998765
No 242
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.37 E-value=1.1e-12 Score=116.90 Aligned_cols=74 Identities=26% Similarity=0.454 Sum_probs=69.9
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
.++|||+|||.++++++|+++|++||.|.++++.++ +|+|||+|.+.++|.+|+ .||+..+.|+.|+|.+++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 578999999999999999999999999999999987 578999999999999999 9999999999999999875
Q ss_pred C
Q 002168 171 Q 171 (957)
Q Consensus 171 k 171 (957)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 243
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.5e-12 Score=117.54 Aligned_cols=77 Identities=31% Similarity=0.510 Sum_probs=71.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhccc--CCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKF--GNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskf--G~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
....++|||+|||..+++++|+++|++| |.|..|++. +|+|||+|.+.++|.+|++.||+..+.|+.|+|.|++.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 3457899999999999999999999999 899998875 679999999999999999999999999999999999866
Q ss_pred c
Q 002168 172 P 172 (957)
Q Consensus 172 ~ 172 (957)
.
T Consensus 90 ~ 90 (99)
T 2cpd_A 90 D 90 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 244
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.7e-12 Score=117.55 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=69.4
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCc-EEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCCC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRS-FAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAK 95 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskG-yAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~~ 95 (957)
....++|||+|||.++|+++|+++|++||.|.+|...+..+ ||||+|.+.++|.+|++ |++..|.|+.|+|.++.+..
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 46778999999999999999999999999999987443332 99999999999999998 99999999999999986543
No 245
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.4e-13 Score=129.73 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=68.5
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeE---EE---ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDK---VT---TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~---V~---~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
......++|||+|||+++|+++|+++|+.||.|.. +. +++++|||||+|.+.++|.+||+ |++..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 33567799999999999999999999999999854 22 46679999999999999999997 9999999999999
Q ss_pred cccC
Q 002168 89 EFAR 92 (957)
Q Consensus 89 ~~A~ 92 (957)
.++.
T Consensus 99 ~~a~ 102 (124)
T 1wel_A 99 HPIT 102 (124)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9884
No 246
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=6.6e-13 Score=122.17 Aligned_cols=81 Identities=25% Similarity=0.398 Sum_probs=74.7
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcc-cCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCce-eCCeEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLK-FGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQ-IGGEQLRVD 166 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFsk-fG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~-i~Gr~I~V~ 166 (957)
....++|||+|||.++++++|+++|++ ||.|.+|+++++ +|+|||+|.+.++|.+|++.||+.. +.|+.|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 456789999999999999999999999 999999999987 5789999999999999999999999 999999999
Q ss_pred EccCCccc
Q 002168 167 FLRSQPSR 174 (957)
Q Consensus 167 ~ak~k~~r 174 (957)
++..+..+
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99766543
No 247
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=2.8e-13 Score=117.56 Aligned_cols=70 Identities=29% Similarity=0.495 Sum_probs=64.8
Q ss_pred CEEEEccCCCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 21 SNLWVGNLSADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
++|||+|||.++++++|+++|++||.|.+|. +++++|||||+|.+.++|.+|++.++ ..|.|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5799999999999999999999999998877 35568999999999999999998888 9999999999986
No 248
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=9.9e-13 Score=123.16 Aligned_cols=78 Identities=28% Similarity=0.418 Sum_probs=72.6
Q ss_pred CCCCceEEcCCCccCCHHHHH---HhhcccCCEeEEEEeecC---------CceEEEeCCHHHHHHHHHHhCCceeCCeE
Q 002168 95 KPSKHLWVGGISQTVSKEELE---EGFLKFGNIEDFKFLKDG---------NTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~---elFskfG~I~~VkIlrdr---------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~ 162 (957)
...++|||+|||.++++++|+ ++|++||.|.+|.+.+++ |+|||+|.+.++|++|++.|||..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346899999999999999999 999999999999999764 59999999999999999999999999999
Q ss_pred EEEEEccCCc
Q 002168 163 LRVDFLRSQP 172 (957)
Q Consensus 163 I~V~~ak~k~ 172 (957)
|+|.|+..+.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 249
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.37 E-value=1.2e-12 Score=117.25 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=71.7
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
...++|||+|||.++++++|+++|++| .|.++++.+.+|+|||+|.+.++|.+|++.|||..+.|+.|+|.|+...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 457899999999999999999999999 9999999888999999999999999999999999999999999998654
No 250
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.2e-12 Score=120.46 Aligned_cols=82 Identities=27% Similarity=0.333 Sum_probs=71.6
Q ss_pred CCCCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcc
Q 002168 13 DDKEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (957)
Q Consensus 13 d~~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I 86 (957)
......+.++|||+|||.++++++|+++|++||.|..|++ ++++|||||+|.+.++|.+|++ ++..|.|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 3444677899999999999999999999999999998873 5568999999999999999996 4778999999
Q ss_pred cccccCCCCC
Q 002168 87 KIEFARPAKP 96 (957)
Q Consensus 87 ~V~~A~p~~~ 96 (957)
+|.++.+...
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 9999976543
No 251
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.37 E-value=5.4e-13 Score=133.14 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=68.1
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCC--CeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFG--ALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG--~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
..++|||+|||+++|+++|+++|++|| .|.+|+ +++++|||||+|.+.++|.+||+.|+|..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 898887 356789999999999999999999999999999999999
Q ss_pred cC
Q 002168 91 AR 92 (957)
Q Consensus 91 A~ 92 (957)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 252
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.36 E-value=2e-13 Score=122.39 Aligned_cols=73 Identities=33% Similarity=0.562 Sum_probs=66.4
Q ss_pred CEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCC
Q 002168 21 SNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~ 94 (957)
++|||+|||.++++++|+++|++||.|.+|.. ++++|||||+|.+.+ |.+|++.|+|..|.|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999998883 567899999999999 99999999999999999999999754
No 253
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.36 E-value=8.4e-13 Score=127.50 Aligned_cols=80 Identities=34% Similarity=0.522 Sum_probs=74.1
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
...+.++|||+|||.++++++|+++|++||.|.+|+++++ +|+|||+|.+.++|++|++.|||..|.|+.|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3566789999999999999999999999999999999866 5799999999999999999999999999999999
Q ss_pred EccCCc
Q 002168 167 FLRSQP 172 (957)
Q Consensus 167 ~ak~k~ 172 (957)
|+..+.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 987654
No 254
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=5.5e-13 Score=122.57 Aligned_cols=79 Identities=32% Similarity=0.584 Sum_probs=73.5
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
..++|||+|||..+++++|+++|++||.|..|+++++ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4589999999999999999999999999999999977 4789999999999999999999999999999999998
Q ss_pred CCccc
Q 002168 170 SQPSR 174 (957)
Q Consensus 170 ~k~~r 174 (957)
.+..+
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 76543
No 255
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.36 E-value=3.8e-12 Score=120.38 Aligned_cols=80 Identities=18% Similarity=0.321 Sum_probs=69.3
Q ss_pred CCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 002168 219 PPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS-----RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 293 (957)
Q Consensus 219 ~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~s-----rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A 293 (957)
...+.|||++++. .+++++|+++|+.||.|++|++..+ +|||||+|.+.++|.+|++.|||..|+|+.|+|.|+
T Consensus 5 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNR-ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTT-TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3455666766664 6999999999999999999999854 599999999999999999999999999999999999
Q ss_pred cCCCCC
Q 002168 294 SSELAP 299 (957)
Q Consensus 294 ~~~~~p 299 (957)
+.+...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 765443
No 256
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.36 E-value=7.6e-13 Score=123.15 Aligned_cols=77 Identities=12% Similarity=0.067 Sum_probs=69.6
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCC---eeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGA---LDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~---I~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I 86 (957)
.+....++|||+|||+++|+++|+++|+.||. |.+|+ .++++|||||+|.+.++|.+||+ +++..|.|+.|
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 34578899999999999999999999999998 77777 35689999999999999999997 99999999999
Q ss_pred cccccC
Q 002168 87 KIEFAR 92 (957)
Q Consensus 87 ~V~~A~ 92 (957)
+|.++.
T Consensus 85 ~V~~a~ 90 (107)
T 2lmi_A 85 EVYEIN 90 (107)
T ss_dssp CCEECC
T ss_pred EEEECC
Confidence 999874
No 257
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.36 E-value=7.4e-13 Score=117.58 Aligned_cols=73 Identities=27% Similarity=0.510 Sum_probs=69.1
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccC----C-------CeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKF----G-------ALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNP 85 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~Fskf----G-------~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~ 85 (957)
.++.++|||+|||+++++++|+++|++| | .|.+|++.+++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 3578999999999999999999999999 8 8999999899999999999999999999 99999999999
Q ss_pred ccccc
Q 002168 86 IKIEF 90 (957)
Q Consensus 86 I~V~~ 90 (957)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99874
No 258
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.36 E-value=8.3e-13 Score=121.94 Aligned_cols=80 Identities=24% Similarity=0.417 Sum_probs=73.7
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCcee---CCeEE
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQI---GGEQL 163 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i---~Gr~I 163 (957)
+....++|||+|||..+++++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+|++.||+..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456789999999999999999999999999999999886 47999999999999999999999987 89999
Q ss_pred EEEEccCCc
Q 002168 164 RVDFLRSQP 172 (957)
Q Consensus 164 ~V~~ak~k~ 172 (957)
+|.|+..+.
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998765
No 259
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=3.6e-13 Score=119.39 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=70.0
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|.+|++..+ +|+|||+|.+.++|.+|++.|||..+.|+.|++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 356789999999999999999999999999999999877 57999999999999999999999999999998876
Q ss_pred cc
Q 002168 168 LR 169 (957)
Q Consensus 168 ak 169 (957)
.+
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 260
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.35 E-value=8.2e-13 Score=125.53 Aligned_cols=77 Identities=27% Similarity=0.510 Sum_probs=70.3
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
+.++|||+|||.++|+++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|+ .|+|..|.|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4789999999999999999999999999998873 556899999999999999999 899999999999999997
Q ss_pred CCCC
Q 002168 93 PAKP 96 (957)
Q Consensus 93 p~~~ 96 (957)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 5443
No 261
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.1e-12 Score=119.46 Aligned_cols=78 Identities=22% Similarity=0.458 Sum_probs=70.4
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec--CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD--GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd--rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
....++|||+|||..+++++|+++|++||.|. +.++.+ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.+++.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34578999999999999999999999999986 566544 789999999999999999999999999999999999765
Q ss_pred c
Q 002168 172 P 172 (957)
Q Consensus 172 ~ 172 (957)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 262
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.35 E-value=3.5e-13 Score=121.27 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=65.5
Q ss_pred CceEEcCCCccCCHHHHHHhhcccC--CEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFG--NIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG--~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
.+|||+|||.++++++|+++|++|| .|.+++++.+ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 9999999987 3689999999999999999999999999999999987
Q ss_pred CCc
Q 002168 170 SQP 172 (957)
Q Consensus 170 ~k~ 172 (957)
...
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 263
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.35 E-value=6.1e-13 Score=129.81 Aligned_cols=79 Identities=25% Similarity=0.472 Sum_probs=72.2
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeE--------E---EecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDK--------V---TTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNP 85 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~--------V---~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~ 85 (957)
..++++|||+|||+++|+++|+++|++||.|.. | .+++++|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 567899999999999999999999999998764 3 37889999999999999999999999999999999
Q ss_pred ccccccCCCC
Q 002168 86 IKIEFARPAK 95 (957)
Q Consensus 86 I~V~~A~p~~ 95 (957)
|+|.++++..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997543
No 264
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=8.4e-13 Score=122.28 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=70.1
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
......++|||+|||+++|++||+++|++||.+ +|+ +++++|||||+|.+.++|.+|| ++++..|.|+.|+|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 345678999999999999999999999999955 666 4567899999999999999999 689999999999999
Q ss_pred ccCCCCC
Q 002168 90 FARPAKP 96 (957)
Q Consensus 90 ~A~p~~~ 96 (957)
++.+...
T Consensus 88 ~~~~~~~ 94 (102)
T 1wez_A 88 LNSTAGT 94 (102)
T ss_dssp EECCCCC
T ss_pred ECCCCCC
Confidence 9875543
No 265
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.6e-12 Score=116.48 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=70.3
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE-e--cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-T--YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~-~--grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
....++|||+|||+++|+++|+++|++||.|.+|+ + .+..+.|||+|.+.++|.+|++.|+|..|.|+.|+|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 45679999999999999999999999999999983 3 34556699999999999999999999999999999999976
Q ss_pred C
Q 002168 94 A 94 (957)
Q Consensus 94 ~ 94 (957)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 266
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.34 E-value=2.5e-12 Score=114.48 Aligned_cols=75 Identities=21% Similarity=0.401 Sum_probs=68.7
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
.....++|||+|||..+++++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+|++ +++..++|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 4567889999999999999999999999999999999987 3689999999999999995 58889999999999
Q ss_pred Ec
Q 002168 167 FL 168 (957)
Q Consensus 167 ~a 168 (957)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 267
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=7.4e-13 Score=120.51 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=70.6
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|++|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345688999999999999999999999999987777765 47899999999999999999999999999999999
Q ss_pred ccCC
Q 002168 168 LRSQ 171 (957)
Q Consensus 168 ak~k 171 (957)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 268
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.34 E-value=2e-12 Score=123.58 Aligned_cols=79 Identities=25% Similarity=0.416 Sum_probs=72.7
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCC
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPA 94 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~ 94 (957)
....++++|||+|| ++|+++|+++|++||.|.+|.+.+++|||||+|.+.++|.+|++.|++..|.|+.|+|.|+++.
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 33567899999996 7999999999999999999998899999999999999999999999999999999999999765
Q ss_pred C
Q 002168 95 K 95 (957)
Q Consensus 95 ~ 95 (957)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 269
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.34 E-value=7.5e-13 Score=121.81 Aligned_cols=77 Identities=23% Similarity=0.360 Sum_probs=71.3
Q ss_pred CCCCceEEcCCCc------cCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCC-e
Q 002168 95 KPSKHLWVGGISQ------TVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGG-E 161 (957)
Q Consensus 95 ~~sr~LyVgNLP~------~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~G-r 161 (957)
..+++|||+|||. ++++++|+++|++||.|.+|+|+++ +|+|||+|.+.++|.+|++.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 9999999999999999999999876 4799999999999999999999999999 9
Q ss_pred EEEEEEccCC
Q 002168 162 QLRVDFLRSQ 171 (957)
Q Consensus 162 ~I~V~~ak~k 171 (957)
.|+|.++...
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998754
No 270
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.8e-12 Score=115.19 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=71.8
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
+....++|||+|||.++++++|+++|+.| .|.+|+++++ +|+|||+|.+.++|.+|++ ||+..|+|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 34567899999999999999999999999 9999999987 4689999999999999999 999999999999999
Q ss_pred ccCCc
Q 002168 168 LRSQP 172 (957)
Q Consensus 168 ak~k~ 172 (957)
+..+.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 87653
No 271
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=5.5e-13 Score=125.49 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=68.8
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCe-eEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGAL-DKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I-~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
...+.++|||+|||+++|+++|+++|++||.| .+|+ +++++|||||+|.+.++|.+||+. ++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 35678999999999999999999999999999 6666 366899999999999999999955 9999999999999
Q ss_pred ccC
Q 002168 90 FAR 92 (957)
Q Consensus 90 ~A~ 92 (957)
++.
T Consensus 90 ~a~ 92 (114)
T 2cpy_A 90 VVT 92 (114)
T ss_dssp EEC
T ss_pred ECC
Confidence 985
No 272
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.9e-12 Score=120.06 Aligned_cols=79 Identities=29% Similarity=0.408 Sum_probs=72.0
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCC-EeEEEEe-------ecCCceEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGN-IEDFKFL-------KDGNTAFVEYSRLEDAAEALKNIN--GRQIGGEQLR 164 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~-I~~VkIl-------rdrG~AFVeF~t~edA~kAIe~Ln--G~~i~Gr~I~ 164 (957)
...++|||+|||..+++++|+++|++||. |.+|.++ +.+|+|||+|.+.++|.+|++.|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 346899999999999999999996 5899999999
Q ss_pred EEEccCCcc
Q 002168 165 VDFLRSQPS 173 (957)
Q Consensus 165 V~~ak~k~~ 173 (957)
|.|++.+..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987653
No 273
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.34 E-value=3e-12 Score=126.70 Aligned_cols=80 Identities=31% Similarity=0.421 Sum_probs=74.1
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+|+++|+++|++||.|..|+|+.++ ++|||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567899999999999999999999999999999998873 5899999999999999999999999999999999
Q ss_pred ccCCcc
Q 002168 168 LRSQPS 173 (957)
Q Consensus 168 ak~k~~ 173 (957)
++....
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987553
No 274
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.34 E-value=1.7e-12 Score=122.57 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=62.9
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
+..++|||+|||+++|+++|+++|++||+|..|.+... |||||+|.+.++|.+||+.||+..|.|+.|++
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 46799999999999999999999999999999997655 99999999999999999999999999998443
No 275
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.34 E-value=3.3e-12 Score=119.42 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=69.1
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||.++++++|+++|+.||.|.+|+++++ +|+|||+|.+.++|.+|++.+ +..++|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 456789999999999999999999999999999999877 479999999999999999876 5999999999999
Q ss_pred ccCCc
Q 002168 168 LRSQP 172 (957)
Q Consensus 168 ak~k~ 172 (957)
+..+.
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98654
No 276
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=4.4e-12 Score=116.71 Aligned_cols=78 Identities=23% Similarity=0.528 Sum_probs=71.9
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
+....++|||+|||.++++++|+++|++|| |.+|++++++ |+|||+|.+.++|.+|+ .||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 355678999999999999999999999997 9999999874 58999999999999999 999999999999999
Q ss_pred EccCCc
Q 002168 167 FLRSQP 172 (957)
Q Consensus 167 ~ak~k~ 172 (957)
++..+.
T Consensus 89 ~a~~~~ 94 (103)
T 2dng_A 89 IAEGRK 94 (103)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998765
No 277
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=2e-12 Score=124.79 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=72.5
Q ss_pred CCCCCceEEcCCCccCCHHHHH----HhhcccCCEeEEEEeec---CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELE----EGFLKFGNIEDFKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~----elFskfG~I~~VkIlrd---rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
..++++|||+||++.+++++|+ ++|++||.|.+|.+.++ +|+|||+|.+.++|..|++.|||..+.|+.|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4557899999999999999876 79999999999988653 7999999999999999999999999999999999
Q ss_pred EccCCcc
Q 002168 167 FLRSQPS 173 (957)
Q Consensus 167 ~ak~k~~ 173 (957)
|++.+..
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 9987654
No 278
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.33 E-value=1.1e-12 Score=128.26 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=68.8
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCC---eeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGA---LDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPI 86 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~---I~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I 86 (957)
.+....++|||+|||+++|++||+++|++||. |.+|+ .++++|||||+|.+.++|.+||+ +++..|.|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34567899999999999999999999999998 66555 35678999999999999999997 99999999999
Q ss_pred cccccC
Q 002168 87 KIEFAR 92 (957)
Q Consensus 87 ~V~~A~ 92 (957)
+|.++.
T Consensus 118 ~V~~a~ 123 (136)
T 2hgl_A 118 EVFKSH 123 (136)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999873
No 279
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=3.2e-12 Score=116.60 Aligned_cols=74 Identities=24% Similarity=0.360 Sum_probs=65.9
Q ss_pred CCCCCE-EEEccCCCCCcHHH----HHHHhccC-CCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 17 APPSSN-LWVGNLSADTTDAD----LKELFGKF-GALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 17 ~~~s~t-LfVgNLP~svTE~d----L~e~Fskf-G~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
.+++.+ |||+|||+.+++++ |+++|++| |+|.+|. .|+|||+|.+.++|.+|+++|+|..+.||.|+|.+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 345666 99999999999988 55899999 5999993 39999999999999999999999999999999999
Q ss_pred cCCC
Q 002168 91 ARPA 94 (957)
Q Consensus 91 A~p~ 94 (957)
++..
T Consensus 81 A~~~ 84 (96)
T 2diu_A 81 TPKN 84 (96)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 9743
No 280
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=6.7e-13 Score=126.00 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=67.9
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCC---eeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGA---LDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~---I~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
....++|||+|||+++|+++|+++|++||. |.+|+ .++++|||||+|.+.++|.+||+ +++..|.|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 567899999999999999999999999998 66666 35678999999999999999997 9999999999999
Q ss_pred cccC
Q 002168 89 EFAR 92 (957)
Q Consensus 89 ~~A~ 92 (957)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9873
No 281
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.33 E-value=1.7e-12 Score=115.22 Aligned_cols=73 Identities=22% Similarity=0.445 Sum_probs=69.1
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhccc----C-------CEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKF----G-------NIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskf----G-------~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~ 162 (957)
....++|||+|||.++++++|+++|++| | .|.++++.+++|+|||+|.+.++|.+|+ .|||..+.|+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 3457899999999999999999999999 8 9999999999999999999999999999 99999999999
Q ss_pred EEEEE
Q 002168 163 LRVDF 167 (957)
Q Consensus 163 I~V~~ 167 (957)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99974
No 282
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.33 E-value=2e-12 Score=129.93 Aligned_cols=78 Identities=26% Similarity=0.370 Sum_probs=69.9
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe--cCCCcEEEEEeCCHHHHHHHHHHhcCCcccc--CcccccccC
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT--YSSRSFAFVYFKRVEDAKAAKDALQGSDFRG--NPIKIEFAR 92 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~--grskGyAFVeF~s~edA~~AL~~Lng~~I~G--r~I~V~~A~ 92 (957)
.....+|||+||++.+|+++|+++|++||+|.+|++ .+++|||||+|.+.++|.+|++.|+|..|.| +.|+|+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 344567899999999999999999999999999884 4567899999999999999999999999966 999999997
Q ss_pred CC
Q 002168 93 PA 94 (957)
Q Consensus 93 p~ 94 (957)
+.
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 283
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.32 E-value=4.6e-12 Score=120.72 Aligned_cols=81 Identities=26% Similarity=0.401 Sum_probs=71.2
Q ss_pred CCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCC------CcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEE
Q 002168 218 GPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPS------RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIM 291 (957)
Q Consensus 218 ~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~s------rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~ 291 (957)
....++|||++++. .+++++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|++.|||..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nlp~-~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGVHE-EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESCCT-TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34467788877774 6999999999999999999999744 7899999999999999999999999999999999
Q ss_pred eecCCCCC
Q 002168 292 FSSSELAP 299 (957)
Q Consensus 292 ~A~~~~~p 299 (957)
|+..+..+
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99766443
No 284
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.5e-12 Score=120.03 Aligned_cols=78 Identities=21% Similarity=0.378 Sum_probs=72.6
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|.+|++++++ |+|||+|.+.++|.+|++. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 4567899999999999999999999999999999999873 6899999999999999998 99999999999999
Q ss_pred ccCCc
Q 002168 168 LRSQP 172 (957)
Q Consensus 168 ak~k~ 172 (957)
+..+.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 88665
No 285
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=1.3e-13 Score=129.78 Aligned_cols=81 Identities=28% Similarity=0.458 Sum_probs=73.2
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeE--------EE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDK--------VT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDF 81 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~--------V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I 81 (957)
+..+.++|||+|||.++++++|+++|++||.|.. |+ +++++|||||+|.+.++|.+|++.|++..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4578899999999999999999999999999987 55 356789999999999999999999999999
Q ss_pred ccCcccccccCCCCC
Q 002168 82 RGNPIKIEFARPAKP 96 (957)
Q Consensus 82 ~Gr~I~V~~A~p~~~ 96 (957)
.|+.|+|.++++...
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999976443
No 286
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.32 E-value=3.3e-12 Score=116.27 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=69.1
Q ss_pred CCCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 217 DGPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 217 ~~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
...+.+.|||++++...+++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|||..|.|+.|+|.|++.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 345577778877772159999999999999999999997 899999999999999999999999999999999999776
Q ss_pred CCC
Q 002168 297 LAP 299 (957)
Q Consensus 297 ~~p 299 (957)
..+
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 443
No 287
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.32 E-value=8.8e-13 Score=113.98 Aligned_cols=69 Identities=29% Similarity=0.535 Sum_probs=63.7
Q ss_pred EEEEccCCCCCcHHHHHHHhccCCCeeEEEe------cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 22 NLWVGNLSADTTDADLKELFGKFGALDKVTT------YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 22 tLfVgNLP~svTE~dL~e~FskfG~I~~V~~------grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
+|||+|||.++++++|+++|++||.|.+|.. ++++|||||+|.+.++|.+|++ +++..|.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5999999999999999999999999998883 5679999999999999999995 6899999999999875
No 288
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=4.4e-12 Score=116.15 Aligned_cols=76 Identities=33% Similarity=0.477 Sum_probs=68.6
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
....++|||+|||..+++++|+++|++||.| +++++ +|+|||+|.+.++|++|++.||+..|.|+.|+|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4567999999999999999999999999987 44443 689999999999999999999999999999999999
Q ss_pred cCCc
Q 002168 169 RSQP 172 (957)
Q Consensus 169 k~k~ 172 (957)
+.+.
T Consensus 89 ~~~~ 92 (101)
T 2fc9_A 89 GPRG 92 (101)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8764
No 289
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=120.04 Aligned_cols=76 Identities=21% Similarity=0.458 Sum_probs=68.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
....++|||+||+.++++++|+++|++|| |.+|+++++ +|+|||+|.+.++|.+|+ .|||..++|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45578999999999999999999999999 999999876 479999999999999999 899999999999999
Q ss_pred EccCC
Q 002168 167 FLRSQ 171 (957)
Q Consensus 167 ~ak~k 171 (957)
+++.+
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98764
No 290
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.6e-12 Score=116.45 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=71.6
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEE-EEeecCCc--eEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDF-KFLKDGNT--AFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~V-kIlrdrG~--AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
....++|||+|||..+++++|+++|++||.|.+| .++.++.. |||+|.+.++|.+|++.|||..+.|+.|+|.++..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3457899999999999999999999999999999 48877544 99999999999999999999999999999999976
Q ss_pred C
Q 002168 171 Q 171 (957)
Q Consensus 171 k 171 (957)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 291
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.32 E-value=9.6e-13 Score=118.95 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=68.0
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||.++++++|+++|++||.|..+.++.+ +|+|||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 345689999999999999999999999999988877764 47899999999999999999999999999999998
Q ss_pred cc
Q 002168 168 LR 169 (957)
Q Consensus 168 ak 169 (957)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 292
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.32 E-value=3.2e-12 Score=123.46 Aligned_cols=75 Identities=36% Similarity=0.637 Sum_probs=70.0
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|++||.|..++++++ +|+|||+|.+.++|++|++.|||..+.|+.|+|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 456789999999999999999999999999999999876 58999999999999999999999999999999997
Q ss_pred c
Q 002168 168 L 168 (957)
Q Consensus 168 a 168 (957)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 293
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.32 E-value=3.5e-12 Score=121.43 Aligned_cols=79 Identities=27% Similarity=0.396 Sum_probs=73.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
....++|||+||+..+++++|+++|++||.|.+|++.++ +|+|||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 345689999999999999999999999999999999875 589999999999999999999999999999999999
Q ss_pred cCCc
Q 002168 169 RSQP 172 (957)
Q Consensus 169 k~k~ 172 (957)
....
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7654
No 294
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.8e-12 Score=120.53 Aligned_cols=77 Identities=13% Similarity=0.310 Sum_probs=71.0
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
....++|||+|||.++|+++|+++|+.||.|.+|.++++ +|+|||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 345689999999999999999999999999999999975 5899999999999999998 9999999999999987
Q ss_pred cCC
Q 002168 169 RSQ 171 (957)
Q Consensus 169 k~k 171 (957)
...
T Consensus 87 ~~~ 89 (103)
T 1s79_A 87 DDY 89 (103)
T ss_dssp HHH
T ss_pred hHH
Confidence 653
No 295
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=3.1e-12 Score=119.93 Aligned_cols=76 Identities=17% Similarity=0.430 Sum_probs=70.9
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
.++|||+|||..+++++|+++|+.||.|.+|+++.+ +|+|||+|.+.++|.+|+ .||+..|.|+.|+|.+++.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 579999999999999999999999999999999865 479999999999999999 9999999999999999986
Q ss_pred Ccc
Q 002168 171 QPS 173 (957)
Q Consensus 171 k~~ 173 (957)
+..
T Consensus 104 ~~~ 106 (114)
T 2cq4_A 104 EKN 106 (114)
T ss_dssp HHH
T ss_pred Ccc
Confidence 653
No 296
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.31 E-value=3e-12 Score=127.75 Aligned_cols=78 Identities=19% Similarity=0.287 Sum_probs=70.8
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccC--CEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFG--NIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG--~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
...++|||+||+.++++++|+++|+.|| .|.+|+++.+ +|+|||+|.+.++|.+||+.|||..|+|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 9999999987 4689999999999999999999999999999999
Q ss_pred EccCCc
Q 002168 167 FLRSQP 172 (957)
Q Consensus 167 ~ak~k~ 172 (957)
++..+.
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 987543
No 297
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.31 E-value=3.1e-12 Score=124.03 Aligned_cols=77 Identities=27% Similarity=0.422 Sum_probs=68.8
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-cCCCcE-EEEEeCCHHHHHHHHHHhcCCcccc--CcccccccCC
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-YSSRSF-AFVYFKRVEDAKAAKDALQGSDFRG--NPIKIEFARP 93 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-grskGy-AFVeF~s~edA~~AL~~Lng~~I~G--r~I~V~~A~p 93 (957)
.+-..|||+||++.+|+++|+++|++||.|.+|++ .+.+|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 34456669999999999999999999999999883 456787 9999999999999999999999998 8999999975
Q ss_pred C
Q 002168 94 A 94 (957)
Q Consensus 94 ~ 94 (957)
.
T Consensus 106 ~ 106 (130)
T 3zzy_A 106 T 106 (130)
T ss_dssp S
T ss_pred C
Confidence 4
No 298
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.31 E-value=4.7e-12 Score=122.71 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=69.3
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-CCc-eEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEEccCCc
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-GNT-AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQP 172 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-rG~-AFVeF~t~edA~kAIe~LnG~~i~G--r~I~V~~ak~k~ 172 (957)
--.|||+||++.+|+++|+++|++||.|.+|++..+ +|+ |||+|.+.++|.+|++.|||..|.| +.|+|+|++...
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 346789999999999999999999999999998765 566 9999999999999999999999987 999999998664
No 299
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=4.9e-12 Score=121.71 Aligned_cols=77 Identities=29% Similarity=0.367 Sum_probs=67.5
Q ss_pred CCCCE--EEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcE-EEEEeCCHHHHHHHHHHhcCCcccc--CcccccccC
Q 002168 18 PPSSN--LWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSF-AFVYFKRVEDAKAAKDALQGSDFRG--NPIKIEFAR 92 (957)
Q Consensus 18 ~~s~t--LfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGy-AFVeF~s~edA~~AL~~Lng~~I~G--r~I~V~~A~ 92 (957)
.++++ |||+||++.+|+++|+++|++||.|.+|++.+..|| |||+|.+.++|.+|++.|||..|.| +.|+|.+++
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 44555 579999999999999999999999999885334586 9999999999999999999999988 589999997
Q ss_pred CC
Q 002168 93 PA 94 (957)
Q Consensus 93 p~ 94 (957)
+.
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 300
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=4.4e-12 Score=122.04 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=68.3
Q ss_pred ceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCc-eEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEEccCCc
Q 002168 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNT-AFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQP 172 (957)
Q Consensus 99 ~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~-AFVeF~t~edA~kAIe~LnG~~i~G--r~I~V~~ak~k~ 172 (957)
.|||+||++.+++++|+++|++||.|.+|++....|+ |||+|.+.++|..|++.|||..|.| +.|+|.|++.+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4679999999999999999999999999999876786 9999999999999999999999977 699999998664
No 301
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.31 E-value=3.7e-12 Score=120.97 Aligned_cols=75 Identities=20% Similarity=0.395 Sum_probs=70.3
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
.++|||+|||.++++++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+|+ .|||..|.|+.|+|.|++.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 579999999999999999999999999999999987 478999999999999999 8999999999999999875
Q ss_pred Cc
Q 002168 171 QP 172 (957)
Q Consensus 171 k~ 172 (957)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 302
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.31 E-value=4e-12 Score=117.84 Aligned_cols=78 Identities=23% Similarity=0.371 Sum_probs=70.9
Q ss_pred CCCCCceEEcCCCccC------CHHHHHHhhcccCCEeEEEEeec----CCceEEEeCCHHHHHHHHHHhCCceeCCe-E
Q 002168 94 AKPSKHLWVGGISQTV------SKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGE-Q 162 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~v------TeedL~elFskfG~I~~VkIlrd----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr-~ 162 (957)
....++|||+|||..+ ++++|+++|++||.|.+|.+.+. +|+|||+|.+.++|.+|++.|||..+.|+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3446899999999999 78999999999999999999843 68999999999999999999999999998 9
Q ss_pred EEEEEccCC
Q 002168 163 LRVDFLRSQ 171 (957)
Q Consensus 163 I~V~~ak~k 171 (957)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998643
No 303
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.30 E-value=2.3e-12 Score=121.60 Aligned_cols=75 Identities=20% Similarity=0.365 Sum_probs=66.9
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeE-----EEEEEcc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQ-----LRVDFLR 169 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~-----I~V~~ak 169 (957)
...++|||+|||.++++++|+++|++||.|.+|.|+.+ |+|||+|.+.++|++||+.||+..|.|+. |+|....
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 45689999999999999999999999999999999988 99999999999999999999999999988 6666554
Q ss_pred C
Q 002168 170 S 170 (957)
Q Consensus 170 ~ 170 (957)
.
T Consensus 93 ~ 93 (115)
T 3beg_B 93 P 93 (115)
T ss_dssp -
T ss_pred C
Confidence 4
No 304
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=5.5e-12 Score=118.57 Aligned_cols=76 Identities=20% Similarity=0.419 Sum_probs=70.9
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
.++|||+|||..+++++|+++|+.||.|..|.|+++ +|+|||+|.+.++|.+|++. ++..|.|+.|+|.++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 479999999999999999999999999999999987 47999999999999999987 99999999999999987
Q ss_pred Ccc
Q 002168 171 QPS 173 (957)
Q Consensus 171 k~~ 173 (957)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 653
No 305
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.1e-12 Score=121.46 Aligned_cols=78 Identities=13% Similarity=0.163 Sum_probs=71.5
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCE-eEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNI-EDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I-~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||+++|+++|+++|+.||.| ..|+|+.+ +|+|||+|.+.++|.+||+. |+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4557899999999999999999999999999 88999875 58999999999999999977 99999999999999
Q ss_pred ccCCc
Q 002168 168 LRSQP 172 (957)
Q Consensus 168 ak~k~ 172 (957)
+..+.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97665
No 306
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=6e-12 Score=117.81 Aligned_cols=78 Identities=21% Similarity=0.408 Sum_probs=71.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCcee--------CC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQI--------GG 160 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i--------~G 160 (957)
....++|||+|||..+++++|+++|+.||.|..|+++++ +|+|||+|.+.++|.+|++.|||..+ .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456789999999999999999999999999999999987 47899999999999999999999999 57
Q ss_pred eEEEEEEccCC
Q 002168 161 EQLRVDFLRSQ 171 (957)
Q Consensus 161 r~I~V~~ak~k 171 (957)
+.|.|.|+...
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998743
No 307
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=2.2e-12 Score=111.86 Aligned_cols=70 Identities=19% Similarity=0.412 Sum_probs=66.2
Q ss_pred CceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
++|||+|||.++++++|+++|++||.|.++.+.++ +|+|||+|.+.++|.+|++.++ ..++|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999876 4789999999999999999999 9999999999986
No 308
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.29 E-value=5e-12 Score=121.96 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=67.2
Q ss_pred CCCCCCCEEEEccCCCCCcHHHHHHHhccCCCee--EEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 15 KEAPPSSNLWVGNLSADTTDADLKELFGKFGALD--KVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~--~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
.+....++|||+|||+++||+||+++|++| .|. +|+ .++++|||||+|.+.++|.+||+ +++..|.|+.|+
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 345678999999999999999999999999 566 777 35689999999999999999995 678999999999
Q ss_pred ccccC
Q 002168 88 IEFAR 92 (957)
Q Consensus 88 V~~A~ 92 (957)
|.++.
T Consensus 115 V~~a~ 119 (126)
T 2hgm_A 115 VFKSS 119 (126)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98874
No 309
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.28 E-value=1.9e-12 Score=112.00 Aligned_cols=69 Identities=20% Similarity=0.397 Sum_probs=64.9
Q ss_pred ceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 99 ~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
+|||+|||.++++++|+++|++||.|.+|.+.+++ |+|||+|.+.++|++|++ +|+..++|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999998773 689999999999999997 9999999999999875
No 310
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=9.5e-12 Score=112.68 Aligned_cols=78 Identities=26% Similarity=0.402 Sum_probs=67.8
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCC-ceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGN-TAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG-~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
....++|||+|||.++++++|+++|+.||.|.+|.+.+..+ +|||+|.+.++|.+|++ ||+..+.|+.|.|.++..+.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 34568999999999999999999999999999983322222 89999999999999999 99999999999999876543
No 311
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.28 E-value=5.2e-12 Score=128.51 Aligned_cols=78 Identities=33% Similarity=0.488 Sum_probs=72.1
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
...++++|||+|||+++++++|+++|++||.|..|.+ ++++|||||+|.+.++|.+|++.|++..|.|+.|+|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999998884 56789999999999999999999999999999999999
Q ss_pred cCC
Q 002168 91 ARP 93 (957)
Q Consensus 91 A~p 93 (957)
+..
T Consensus 164 a~~ 166 (177)
T 2f3j_A 164 VAS 166 (177)
T ss_dssp ESS
T ss_pred ecC
Confidence 864
No 312
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.28 E-value=5e-12 Score=127.01 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=69.9
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec--CCceEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEEccCC
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD--GNTAFVEYSRLEDAAEALKNINGRQIGG--EQLRVDFLRSQ 171 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd--rG~AFVeF~t~edA~kAIe~LnG~~i~G--r~I~V~~ak~k 171 (957)
...+|||+||++.+|+++|+++|++||.|++|++..+ +++|||+|.+.++|++|++.|||..|.| +.|+|+|++.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 3457899999999999999999999999999999755 4689999999999999999999999965 99999999876
Q ss_pred c
Q 002168 172 P 172 (957)
Q Consensus 172 ~ 172 (957)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 313
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.28 E-value=2.3e-12 Score=136.40 Aligned_cols=74 Identities=26% Similarity=0.322 Sum_probs=67.9
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCC--CeeEEE------ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccc
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFG--ALDKVT------TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEF 90 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG--~I~~V~------~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~ 90 (957)
..++|||+|||+++|+++|+++|++|| .|.+|+ +++++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 678999999999999999999999999 898887 456789999999999999999999999999999999999
Q ss_pred cC
Q 002168 91 AR 92 (957)
Q Consensus 91 A~ 92 (957)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 85
No 314
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.28 E-value=6.7e-12 Score=113.23 Aligned_cols=76 Identities=30% Similarity=0.506 Sum_probs=61.4
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-cCCCcEEEEEeCCHHHHHHHHHHhcCCc--cccCcccccccC
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-YSSRSFAFVYFKRVEDAKAAKDALQGSD--FRGNPIKIEFAR 92 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-grskGyAFVeF~s~edA~~AL~~Lng~~--I~Gr~I~V~~A~ 92 (957)
...+.++|||+|||+++||++|+++|++||.|.+|++ ..++|||||+|.+.++|.+ +++.. +.|+.|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 3578899999999999999999999999999999994 4579999999999999984 45555 458899999987
Q ss_pred CCC
Q 002168 93 PAK 95 (957)
Q Consensus 93 p~~ 95 (957)
+..
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 543
No 315
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2.5e-11 Score=111.50 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=70.5
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+++++|+++|+.||.|..|.+++++ |+|||+|.+.++|.+|++ ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4567899999999999999999999999999999999873 589999999999999998 47899999999999
Q ss_pred ccCCc
Q 002168 168 LRSQP 172 (957)
Q Consensus 168 ak~k~ 172 (957)
+..+.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 98764
No 316
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.27 E-value=3.3e-12 Score=124.74 Aligned_cols=79 Identities=18% Similarity=0.180 Sum_probs=71.9
Q ss_pred CCCCCCCceEEcCCCccCCHHHHHHhhcccCC---EeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 002168 92 RPAKPSKHLWVGGISQTVSKEELEEGFLKFGN---IEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQL 163 (957)
Q Consensus 92 ~p~~~sr~LyVgNLP~~vTeedL~elFskfG~---I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I 163 (957)
.+....++|||+|||+++|+++|+++|+.||. |.+|+|+++ +|+|||+|.+.++|++|++ +|+..|+|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34566789999999999999999999999998 889999876 4789999999999999998 99999999999
Q ss_pred EEEEccCC
Q 002168 164 RVDFLRSQ 171 (957)
Q Consensus 164 ~V~~ak~k 171 (957)
+|.++..+
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99988644
No 317
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.27 E-value=2.4e-12 Score=126.21 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=68.8
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
....++|||+|||+++||+||+++|++|| |.+|+ .++++|||||+|.+.++|.+|| ++++..|.|+.|+|.++
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 45678999999999999999999999999 66777 3567999999999999999999 89999999999999998
Q ss_pred CCCCC
Q 002168 92 RPAKP 96 (957)
Q Consensus 92 ~p~~~ 96 (957)
.+...
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 75443
No 318
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=5.3e-12 Score=118.22 Aligned_cols=80 Identities=25% Similarity=0.463 Sum_probs=71.2
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCE----eEEEEeec--CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNI----EDFKFLKD--GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I----~~VkIlrd--rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||..+|+++|+++|++||.| ..+++... +|+|||+|.+.++|.+|++.||+..+.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999988 55665533 68999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002168 168 LRSQPS 173 (957)
Q Consensus 168 ak~k~~ 173 (957)
++.+..
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987653
No 319
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=3.4e-12 Score=119.99 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccC
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFAR 92 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~ 92 (957)
.+.++|||+|||+++|++||+++|++| .|.+|+ .++++|||||+|.+.++|.+|| .+++..|.|+.|+|..+.
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 446899999999999999999999999 788887 3567999999999999999999 899999999999998764
No 320
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.27 E-value=2.6e-12 Score=113.21 Aligned_cols=69 Identities=26% Similarity=0.419 Sum_probs=63.7
Q ss_pred CCceEEcCCCccC------CHHHHHHhhcccCCEeEEEEeec----CCceEEEeCCHHHHHHHHHHhCCceeCCe-EEEE
Q 002168 97 SKHLWVGGISQTV------SKEELEEGFLKFGNIEDFKFLKD----GNTAFVEYSRLEDAAEALKNINGRQIGGE-QLRV 165 (957)
Q Consensus 97 sr~LyVgNLP~~v------TeedL~elFskfG~I~~VkIlrd----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr-~I~V 165 (957)
+++|||+|||..+ ++++|+++|++||.|.+|.+.++ +|+|||+|.+.++|.+|++.|||..+.|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4789999999999 77999999999999999998843 68999999999999999999999999999 8876
No 321
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.27 E-value=5.3e-12 Score=119.77 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=71.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCC---EeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGN---IEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~---I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V 165 (957)
....++|||+|||+++|+++|+++|+.||. |..|+|+.+ +|+|||+|.+.++|++|++ +|+..|+|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456789999999999999999999999998 899999876 4689999999999999998 9999999999999
Q ss_pred EEccCCc
Q 002168 166 DFLRSQP 172 (957)
Q Consensus 166 ~~ak~k~ 172 (957)
.++..+.
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9986543
No 322
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.26 E-value=1.8e-12 Score=127.14 Aligned_cols=114 Identities=10% Similarity=0.104 Sum_probs=68.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHhcCCccccCccc-----ccccCCCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEe
Q 002168 56 RSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK-----IEFARPAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130 (957)
Q Consensus 56 kGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~-----V~~A~p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIl 130 (957)
+++||.+|.-.+.+..++..+... ..|...- -.+.......++|||+|||+++|+++|+++|++|| |.+|+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~ 78 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIE 78 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECC
T ss_pred CCcccccccCccccchhcccchhc-cCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE
Confidence 367888888888877777554332 2222211 11222345678999999999999999999999999 6699998
Q ss_pred ec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 131 KD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 131 rd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
++ +|+|||+|.+.++|++|| .+|+..|.|+.|.|.++....
T Consensus 79 ~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 79 IGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred ECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 76 579999999999999999 899999999999999887654
No 323
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.26 E-value=1.1e-12 Score=117.56 Aligned_cols=74 Identities=23% Similarity=0.464 Sum_probs=67.0
Q ss_pred CceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
++|||+|||.++++++|+++|++||.|.+|++.++ +|+|||+|.+.+ |.+|++.|||..++|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999876 568999999999 99999999999999999999998765
Q ss_pred c
Q 002168 172 P 172 (957)
Q Consensus 172 ~ 172 (957)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 324
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=7.2e-12 Score=115.93 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=69.7
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeE-EEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIED-FKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~-VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||+++++++|+++|+.||.|.+ |.|+.+ +|+|||+|.+.++|.+|++. ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 456789999999999999999999999999987 877755 68999999999999999987 99999999999998
Q ss_pred ccCC
Q 002168 168 LRSQ 171 (957)
Q Consensus 168 ak~k 171 (957)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8654
No 325
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.26 E-value=6.1e-12 Score=113.98 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=69.2
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEe-ecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL-KDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIl-rdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
....++|||+|||..+++++|+++|+.||.|..+... +.+|+|||+|.+.++|.+|++.|||..+.|+.|+|.++..+.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 4457899999999999999999999999988777110 225799999999999999999999999999999999997664
No 326
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.26 E-value=2.1e-12 Score=149.10 Aligned_cols=79 Identities=20% Similarity=0.348 Sum_probs=70.3
Q ss_pred CCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeC------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 002168 219 PPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 292 (957)
Q Consensus 219 ~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~------srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~ 292 (957)
.+.++|||++++. .+++++|+++|+.||.|+.|+|+. .+|||||+|.+.++|.+||+.|||..|.|+.|.|.|
T Consensus 100 ~~~~~lfV~nL~~-~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNY-DTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCC-CCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4566788877774 699999999999999999999974 379999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002168 293 SSSELA 298 (957)
Q Consensus 293 A~~~~~ 298 (957)
+.....
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 986544
No 327
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.26 E-value=2.2e-12 Score=124.33 Aligned_cols=78 Identities=15% Similarity=0.378 Sum_probs=71.5
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeE--EEEeecC------CceEEEeCCHHHHHHHHHHhCCc----eeCCe
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIED--FKFLKDG------NTAFVEYSRLEDAAEALKNINGR----QIGGE 161 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~--VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~----~i~Gr 161 (957)
....++|||+|||+++|+++|+++|++||.|.. |+|++++ |+|||+|.+. +|.+|++.|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345789999999999999999999999999976 9998774 8999999999 999999999999 99999
Q ss_pred EEEEEEccCCc
Q 002168 162 QLRVDFLRSQP 172 (957)
Q Consensus 162 ~I~V~~ak~k~ 172 (957)
.|+|.+++...
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997653
No 328
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.25 E-value=9e-12 Score=119.01 Aligned_cols=77 Identities=35% Similarity=0.572 Sum_probs=72.2
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
....++|||+|| ++++++|+++|++||.|.+|.+.+.+|+|||+|.+.++|.+|++.|||..+.|+.|+|.|++...
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 456789999996 69999999999999999999999889999999999999999999999999999999999998764
No 329
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1.6e-11 Score=112.46 Aligned_cols=77 Identities=27% Similarity=0.493 Sum_probs=68.3
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
....++|||+|||.++++++|+++|+.|+ .|+++.+ +|+|||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45678999999999999999999999885 4556655 37999999999999999999999999999999999
Q ss_pred ccCCcc
Q 002168 168 LRSQPS 173 (957)
Q Consensus 168 ak~k~~ 173 (957)
++.+..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 987653
No 330
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.25 E-value=2.2e-12 Score=118.14 Aligned_cols=76 Identities=17% Similarity=0.344 Sum_probs=67.4
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEee------cCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLK------DGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlr------drG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
...++|||+|||.++++++|+++|++||.|.. .++. .+|+|||+|.+.++|.+|++ ||+..+.|+.|+|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999997766 3332 37899999999999999998 9999999999999999
Q ss_pred cCCc
Q 002168 169 RSQP 172 (957)
Q Consensus 169 k~k~ 172 (957)
+.+.
T Consensus 93 ~~~~ 96 (101)
T 1fj7_A 93 KGRD 96 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8664
No 331
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=3.9e-12 Score=113.67 Aligned_cols=77 Identities=29% Similarity=0.443 Sum_probs=65.2
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCCCC
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKP 96 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~~~ 96 (957)
.++++|||+|||.++|+++|+++|++||.|.+|++ ..++|||||+|.+.++|.+|+.. ...+.|+.|+|.++.+...
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 56899999999999999999999999999999995 45799999999999999765421 2345889999999976544
No 332
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.24 E-value=1.4e-11 Score=111.09 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=62.8
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-CCceEEEeCCHHHHHHHHHHhCCce--eCCeEEEEEEcc
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQ--IGGEQLRVDFLR 169 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-rG~AFVeF~t~edA~kAIe~LnG~~--i~Gr~I~V~~ak 169 (957)
+.....+|||+|||+++|+++|+++|++||.|.+|+++++ +|+|||+|.+.++|.+ +++.. +.|+.|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 4567889999999999999999999999999999999876 8999999999999984 45554 569999999987
Q ss_pred CCc
Q 002168 170 SQP 172 (957)
Q Consensus 170 ~k~ 172 (957)
.+.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 333
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3e-12 Score=122.94 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=64.7
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCe----eEEE-----ecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGAL----DKVT-----TYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKI 88 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I----~~V~-----~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V 88 (957)
.+.++|||+|||+++|++||+++|++||.| .+|+ +++++|||||+|.+.++|.+||+ +++..|.|+.|+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEEEE
Confidence 567899999999999999999999999975 3444 46678999999999999999996 4999999999999
Q ss_pred ccc
Q 002168 89 EFA 91 (957)
Q Consensus 89 ~~A 91 (957)
..+
T Consensus 100 ~~a 102 (123)
T 2dha_A 100 FRS 102 (123)
T ss_dssp EEE
T ss_pred EEC
Confidence 876
No 334
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.24 E-value=1e-11 Score=132.17 Aligned_cols=78 Identities=22% Similarity=0.481 Sum_probs=72.7
Q ss_pred CCCCCEEEEccCCCCC---------cHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCcc------
Q 002168 17 APPSSNLWVGNLSADT---------TDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDF------ 81 (957)
Q Consensus 17 ~~~s~tLfVgNLP~sv---------TE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I------ 81 (957)
....++|||+||+.++ +|++|+++|++||+|++|++..++|||||+|.+.++|..|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 5678999999999998 7999999999999999999888999999999999999999999999999
Q ss_pred ------ccCcccccccCCC
Q 002168 82 ------RGNPIKIEFARPA 94 (957)
Q Consensus 82 ------~Gr~I~V~~A~p~ 94 (957)
.|+.|.|.|+++.
T Consensus 211 e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TGGGGGGSCCCEEEECC--
T ss_pred cccccCCCCEEEEEEccCC
Confidence 8999999999754
No 335
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.23 E-value=1.9e-11 Score=130.09 Aligned_cols=96 Identities=22% Similarity=0.412 Sum_probs=81.2
Q ss_pred cCCccccCcccccccC-------CCCCCCceEEcCCCccC---------CHHHHHHhhcccCCEeEEEEeecCCceEEEe
Q 002168 77 QGSDFRGNPIKIEFAR-------PAKPSKHLWVGGISQTV---------SKEELEEGFLKFGNIEDFKFLKDGNTAFVEY 140 (957)
Q Consensus 77 ng~~I~Gr~I~V~~A~-------p~~~sr~LyVgNLP~~v---------TeedL~elFskfG~I~~VkIlrdrG~AFVeF 140 (957)
+...+.|+.....+.. ....+++|||+||+..+ ++++|+++|++||.|++|+++.++|+|||+|
T Consensus 107 ~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F 186 (240)
T 3u1l_A 107 EVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKF 186 (240)
T ss_dssp SSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEE
T ss_pred cCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEe
Confidence 3444567766665443 24567899999999998 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCcee------------CCeEEEEEEccCCc
Q 002168 141 SRLEDAAEALKNINGRQI------------GGEQLRVDFLRSQP 172 (957)
Q Consensus 141 ~t~edA~kAIe~LnG~~i------------~Gr~I~V~~ak~k~ 172 (957)
.+.++|+.|++.|+|..| .|+.|.|.|++...
T Consensus 187 ~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 187 KYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp SSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 999999999999999999 89999999998765
No 336
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=9.5e-12 Score=115.16 Aligned_cols=77 Identities=12% Similarity=0.164 Sum_probs=68.7
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
....++|||+|||+++|++||+++|+.||.+ +|+|+++ +|+|||+|.+.++|++|| .+|+..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 3456899999999999999999999999955 9999877 468999999999999999 57999999999999987
Q ss_pred cCCc
Q 002168 169 RSQP 172 (957)
Q Consensus 169 k~k~ 172 (957)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 337
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=3.5e-12 Score=121.64 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=69.3
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
+....++|||+|||+++|+++|+++|+.||.|.++.++.+ +|+|||+|.+.++|.+||+ ||+..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 3456789999999999999999999999999987444432 5789999999999999998 99999999999999
Q ss_pred EccCCc
Q 002168 167 FLRSQP 172 (957)
Q Consensus 167 ~ak~k~ 172 (957)
++..+.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987643
No 338
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.2e-11 Score=110.57 Aligned_cols=76 Identities=21% Similarity=0.287 Sum_probs=66.0
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCCc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQP 172 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k~ 172 (957)
..+++|||+|||.++++++|+++|++||.|.+|+++++ +|+|||+|.+.++|++|+.. ...+.|+.|.|.++..+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 45789999999999999999999999999999999877 89999999999999865321 335689999999987654
No 339
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.21 E-value=2.9e-12 Score=117.59 Aligned_cols=75 Identities=19% Similarity=0.428 Sum_probs=67.9
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
...+++|||+|||.++++++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++ ++..|.|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 456799999999999999999999999999998883 4478999999999999999996 999999999999988
Q ss_pred CC
Q 002168 92 RP 93 (957)
Q Consensus 92 ~p 93 (957)
.+
T Consensus 84 ~~ 85 (102)
T 2xs2_A 84 IR 85 (102)
T ss_dssp EE
T ss_pred Cc
Confidence 54
No 340
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.21 E-value=5.7e-12 Score=108.81 Aligned_cols=69 Identities=20% Similarity=0.426 Sum_probs=64.2
Q ss_pred ceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 99 ~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
+|||+|||.++++++|+++|++||.|.+|.+.++ +|+|||+|.+.++|.+|++ +++..+.|+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999866 5799999999999999997 4889999999999875
No 341
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.21 E-value=1.6e-11 Score=119.80 Aligned_cols=80 Identities=26% Similarity=0.488 Sum_probs=70.5
Q ss_pred CCCCCCceEEcCCCccCCHHHHHHhhcccCCEeE--------EEEeec---CCceEEEeCCHHHHHHHHHHhCCceeCCe
Q 002168 93 PAKPSKHLWVGGISQTVSKEELEEGFLKFGNIED--------FKFLKD---GNTAFVEYSRLEDAAEALKNINGRQIGGE 161 (957)
Q Consensus 93 p~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~--------VkIlrd---rG~AFVeF~t~edA~kAIe~LnG~~i~Gr 161 (957)
+...+++|||+|||..+|+++|+++|+.||.|.. +.+... +|+|||+|.+.++|.+|++.|||..+.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 3567889999999999999999999999998865 444432 57999999999999999999999999999
Q ss_pred EEEEEEccCCc
Q 002168 162 QLRVDFLRSQP 172 (957)
Q Consensus 162 ~I~V~~ak~k~ 172 (957)
.|.|.|++...
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 342
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.21 E-value=9.9e-12 Score=131.52 Aligned_cols=76 Identities=20% Similarity=0.345 Sum_probs=70.2
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccC--CEeEEEEeecC------CceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFG--NIEDFKFLKDG------NTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDF 167 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG--~I~~VkIlrdr------G~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ 167 (957)
..++|||+||++.+|+++|+++|++|| .|++|+|++++ |||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999873 6899999999999999999999999999999999
Q ss_pred ccCC
Q 002168 168 LRSQ 171 (957)
Q Consensus 168 ak~k 171 (957)
++..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 343
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.83 E-value=1.4e-12 Score=122.65 Aligned_cols=80 Identities=20% Similarity=0.432 Sum_probs=73.1
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeE--------EEEeec------CCceEEEeCCHHHHHHHHHHhCCceeC
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIED--------FKFLKD------GNTAFVEYSRLEDAAEALKNINGRQIG 159 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~--------VkIlrd------rG~AFVeF~t~edA~kAIe~LnG~~i~ 159 (957)
..+.++|||+|||.++++++|+++|++||.|.. |+++.+ +|+|||+|.+.++|.+|++.||+..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999998 888766 579999999999999999999999999
Q ss_pred CeEEEEEEccCCcc
Q 002168 160 GEQLRVDFLRSQPS 173 (957)
Q Consensus 160 Gr~I~V~~ak~k~~ 173 (957)
|+.|+|.+++.+..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987653
No 344
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=2.3e-11 Score=114.45 Aligned_cols=72 Identities=24% Similarity=0.427 Sum_probs=61.9
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE------e---cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVT------T---YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIK 87 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~------~---grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~ 87 (957)
...+++|||+|||+++|+++|+++|++||.|. +. + ++++|||||+|.+.++|.+|++.|++ +.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 46789999999999999999999999999999 55 1 57899999999999999999998843 6677666
Q ss_pred cccc
Q 002168 88 IEFA 91 (957)
Q Consensus 88 V~~A 91 (957)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6544
No 345
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=2.4e-11 Score=110.95 Aligned_cols=73 Identities=16% Similarity=0.263 Sum_probs=65.9
Q ss_pred CCCc-eEEcCCCccCCHHH----HHHhhcccC-CEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 96 PSKH-LWVGGISQTVSKEE----LEEGFLKFG-NIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 96 ~sr~-LyVgNLP~~vTeed----L~elFskfG-~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
++.+ |||+|||..+++++ |+++|++|| +|.+| ..|+|||+|.+.++|.+|++.|+|..+.||.|+|.|++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 4555 99999999999988 558999995 99998 34999999999999999999999999999999999998
Q ss_pred CCc
Q 002168 170 SQP 172 (957)
Q Consensus 170 ~k~ 172 (957)
.+.
T Consensus 83 ~~s 85 (96)
T 2diu_A 83 KNR 85 (96)
T ss_dssp CSC
T ss_pred CCc
Confidence 765
No 346
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=3.3e-11 Score=113.24 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=67.3
Q ss_pred CCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 97 SKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 97 sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
.++|||+|||+++|+++|+++|+.| .|.+|.|+.+ +|+|||+|.+.++|.+|+ .+|+..|+|+.|.|..+..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4689999999999999999999999 8999999866 589999999999999999 79999999999999887644
No 347
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.19 E-value=7.6e-12 Score=116.36 Aligned_cols=78 Identities=15% Similarity=0.188 Sum_probs=71.0
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCC---EeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGN---IEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~---I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V 165 (957)
....++|||+|||+++|+++|+++|+.||. |.+|+|+.+ +|+|||+|.+.++|.+|++ +|+..++|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 456789999999999999999999999998 899999876 5799999999999999998 9999999999999
Q ss_pred EEccCCc
Q 002168 166 DFLRSQP 172 (957)
Q Consensus 166 ~~ak~k~ 172 (957)
.++..+.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9987543
No 348
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.18 E-value=7e-11 Score=110.25 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=65.8
Q ss_pred CCceEEEecCCCCC----CCCHHHHHHHHhhcCCeEEEEEeC-------CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCe
Q 002168 219 PPSKILWVGYPPSV----QMDEQMLHNAMILFGEIERIKSYP-------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPR 287 (957)
Q Consensus 219 ~ps~VL~Vgnpps~----~vtEeeLr~~Fs~fG~V~~VkI~~-------srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~ 287 (957)
.++++|++.|.... +.++++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.|||+.|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 45778888776531 237899999999999999999973 3799999999999999999999999999999
Q ss_pred EEEEeecC
Q 002168 288 ITIMFSSS 295 (957)
Q Consensus 288 I~V~~A~~ 295 (957)
|.|.|+..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999853
No 349
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.17 E-value=3e-11 Score=122.95 Aligned_cols=78 Identities=27% Similarity=0.401 Sum_probs=72.5
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
...++|||+||+..+++++|+++|++||.|..|.+..+ +|+|||+|.+.++|.+|++.||+..+.|+.|+|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 34679999999999999999999999999999999876 5899999999999999999999999999999999987
Q ss_pred CCc
Q 002168 170 SQP 172 (957)
Q Consensus 170 ~k~ 172 (957)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 654
No 350
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.17 E-value=1.2e-11 Score=113.45 Aligned_cols=76 Identities=18% Similarity=0.395 Sum_probs=69.9
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
...++|||+|||.++++++|+++|+.||.|.+|+++++ +|+|||+|.+.++|.+|++ ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34689999999999999999999999999999999986 4789999999999999997 9999999999999987
Q ss_pred CCc
Q 002168 170 SQP 172 (957)
Q Consensus 170 ~k~ 172 (957)
.+.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 554
No 351
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.13 E-value=1.8e-10 Score=118.71 Aligned_cols=106 Identities=12% Similarity=0.222 Sum_probs=84.3
Q ss_pred CHHHHHHHHHHh--cCCccccCcccccccC--CCC----------CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEe
Q 002168 65 RVEDAKAAKDAL--QGSDFRGNPIKIEFAR--PAK----------PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFL 130 (957)
Q Consensus 65 s~edA~~AL~~L--ng~~I~Gr~I~V~~A~--p~~----------~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIl 130 (957)
+.+....|++.. ....+.+...+|.... +.. ..++|||+|||.++++++|+++|++||.|..|++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567778888665 3334555555554432 222 14789999999999999999999999999999998
Q ss_pred ec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 131 KD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 131 rd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
++ +|+|||+|.+.++|.+|++.++ ..+.|+.|.|.+++.-
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 75 5799999999999999997665 5999999999987654
No 352
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=2.9e-11 Score=116.07 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=68.7
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCE----eEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNI----EDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I----~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~ 164 (957)
....++|||+|||+++|+++|+++|++||.| .+|.|+.+ +|+|||+|.+.++|++|++. |+..|+|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3567899999999999999999999999975 68888876 47899999999999999976 99999999999
Q ss_pred EEEccCC
Q 002168 165 VDFLRSQ 171 (957)
Q Consensus 165 V~~ak~k 171 (957)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9987644
No 353
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.12 E-value=1.8e-10 Score=107.46 Aligned_cols=77 Identities=23% Similarity=0.406 Sum_probs=68.4
Q ss_pred CCCCceEEcCCCc-----cCCHHHHHHhhcccCCEeEEEEeec-------CCceEEEeCCHHHHHHHHHHhCCceeCCeE
Q 002168 95 KPSKHLWVGGISQ-----TVSKEELEEGFLKFGNIEDFKFLKD-------GNTAFVEYSRLEDAAEALKNINGRQIGGEQ 162 (957)
Q Consensus 95 ~~sr~LyVgNLP~-----~vTeedL~elFskfG~I~~VkIlrd-------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~ 162 (957)
.++++|+|.||.. +-++++|+++|++||.|.+|.|.++ +|+|||+|.+.++|.+|++.|||..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999973 2378999999999999999999875 478999999999999999999999999999
Q ss_pred EEEEEccCC
Q 002168 163 LRVDFLRSQ 171 (957)
Q Consensus 163 I~V~~ak~k 171 (957)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998754
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.4e-10 Score=108.66 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=69.9
Q ss_pred CCCCCCCEEEEccCCCCCc-----------HHHHHHHhccCCCeeEEEe--cCCCcEEEEEeCCHHHHHHHHHHhcCCcc
Q 002168 15 KEAPPSSNLWVGNLSADTT-----------DADLKELFGKFGALDKVTT--YSSRSFAFVYFKRVEDAKAAKDALQGSDF 81 (957)
Q Consensus 15 ~e~~~s~tLfVgNLP~svT-----------E~dL~e~FskfG~I~~V~~--grskGyAFVeF~s~edA~~AL~~Lng~~I 81 (957)
....++++|+|.||-...+ +++|+++|++||.|.+|.+ ..++|||||+|.+.++|.+|++.|||..|
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3467899999999944432 6899999999999998874 34799999999999999999999999999
Q ss_pred ccCcccccccCCC
Q 002168 82 RGNPIKIEFARPA 94 (957)
Q Consensus 82 ~Gr~I~V~~A~p~ 94 (957)
.|+.|+|.++.+.
T Consensus 90 ~gr~l~v~~a~~~ 102 (112)
T 2dit_A 90 GGRQITAQAWDGT 102 (112)
T ss_dssp TTEECEEEECCSC
T ss_pred CCcEEEEEEeCCC
Confidence 9999999998754
No 355
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.10 E-value=3.3e-10 Score=105.65 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=64.9
Q ss_pred CCceEEEecCCCCC-CC--------CHHHHHHHHhhcCCeEEEEEeC--------CCcEEEEEeCCHHHHHHHHHHhCCC
Q 002168 219 PPSKILWVGYPPSV-QM--------DEQMLHNAMILFGEIERIKSYP--------SRNYSFVEFRSVDEARRAKEGLQGR 281 (957)
Q Consensus 219 ~ps~VL~Vgnpps~-~v--------tEeeLr~~Fs~fG~V~~VkI~~--------srG~AFVeF~T~edA~~AIe~LNGk 281 (957)
.+++||++.|.-.. .+ .+++|+++|++||.|++|+|++ ++|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788877775332 22 2368999999999999999973 4799999999999999999999999
Q ss_pred eeCCCeEEEEeecC
Q 002168 282 LFNDPRITIMFSSS 295 (957)
Q Consensus 282 ~f~Gr~I~V~~A~~ 295 (957)
.|+|+.|+|.|...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999843
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=5.9e-10 Score=104.49 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=66.6
Q ss_pred CCCCceEEEecCCCCCCC----------CHHHHHHHHhhcCCeEEEEEe--CCCcEEEEEeCCHHHHHHHHHHhCCCeeC
Q 002168 217 DGPPSKILWVGYPPSVQM----------DEQMLHNAMILFGEIERIKSY--PSRNYSFVEFRSVDEARRAKEGLQGRLFN 284 (957)
Q Consensus 217 ~~~ps~VL~Vgnpps~~v----------tEeeLr~~Fs~fG~V~~VkI~--~srG~AFVeF~T~edA~~AIe~LNGk~f~ 284 (957)
...++++|++.|+..... .+++|+++|++||.|.+|.|. ..+|||||+|.+.++|.+|++.|||+.|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 345677888877643111 257999999999999999775 35899999999999999999999999999
Q ss_pred CCeEEEEeecCC
Q 002168 285 DPRITIMFSSSE 296 (957)
Q Consensus 285 Gr~I~V~~A~~~ 296 (957)
|+.|+|.|+...
T Consensus 91 gr~l~v~~a~~~ 102 (112)
T 2dit_A 91 GRQITAQAWDGT 102 (112)
T ss_dssp TEECEEEECCSC
T ss_pred CcEEEEEEeCCC
Confidence 999999998654
No 357
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.09 E-value=6.7e-11 Score=114.09 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=67.2
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEe--EEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIE--DFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~--~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
....++|||+|||+++|+++|+++|+.| .|. +|+|+++ +|+|||+|.+.++|++|++. ++..|+|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 4557899999999999999999999999 566 8998876 68999999999999999974 7799999999999
Q ss_pred EccCC
Q 002168 167 FLRSQ 171 (957)
Q Consensus 167 ~ak~k 171 (957)
++..+
T Consensus 117 ~a~~~ 121 (126)
T 2hgm_A 117 KSSQE 121 (126)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 87543
No 358
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=1.5e-10 Score=108.75 Aligned_cols=75 Identities=15% Similarity=0.310 Sum_probs=63.9
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeec---------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKD---------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrd---------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~ 164 (957)
....++|||+|||.++++++|+++|++||.|. +.++.+ +|+|||+|.+.++|++|++.|+ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 35678999999999999999999999999999 776643 6899999999999999999984 47888888
Q ss_pred EEEccCC
Q 002168 165 VDFLRSQ 171 (957)
Q Consensus 165 V~~ak~k 171 (957)
+..+...
T Consensus 82 ~~~~~~~ 88 (114)
T 2dnl_A 82 CVSSPTI 88 (114)
T ss_dssp EECCSSS
T ss_pred eccCCCc
Confidence 7755433
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.07 E-value=1.5e-10 Score=119.34 Aligned_cols=74 Identities=20% Similarity=0.355 Sum_probs=66.3
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEe-----cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCC
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTT-----YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARP 93 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~-----grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p 93 (957)
..++|||+|||.++|+++|+++|++||.|.+|++ ++++|||||+|.+.++|.+|++.+ +..|.|+.|.|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4689999999999999999999999999998873 557899999999999999999544 5689999999999753
No 360
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.02 E-value=3.5e-10 Score=126.37 Aligned_cols=77 Identities=21% Similarity=0.399 Sum_probs=68.4
Q ss_pred CCCCCCCEEEEcc--CCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccc---cC--ccc
Q 002168 15 KEAPPSSNLWVGN--LSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFR---GN--PIK 87 (957)
Q Consensus 15 ~e~~~s~tLfVgN--LP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~---Gr--~I~ 87 (957)
....++++|||+| |++.+||++|+++|++||+|.+|++.++||||||+|.+.++|++|++.|||..+. |+ .|.
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 3468899999999 5789999999999999999999998889999999999999999999999999873 44 566
Q ss_pred cccc
Q 002168 88 IEFA 91 (957)
Q Consensus 88 V~~A 91 (957)
+.++
T Consensus 93 ~~~~ 96 (345)
T 3tht_A 93 LNFV 96 (345)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6665
No 361
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.00 E-value=1.2e-10 Score=112.05 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=63.7
Q ss_pred CEEEEccC----CCCCcHHHHHHHhccCCCeeEEE------ecCCCcEEEEEeCC----HHH----HHHHHH--HhcCCc
Q 002168 21 SNLWVGNL----SADTTDADLKELFGKFGALDKVT------TYSSRSFAFVYFKR----VED----AKAAKD--ALQGSD 80 (957)
Q Consensus 21 ~tLfVgNL----P~svTE~dL~e~FskfG~I~~V~------~grskGyAFVeF~s----~ed----A~~AL~--~Lng~~ 80 (957)
.+|||+|| |++++|.+|+++|+.||+|.++. +++++|||||+|.+ .++ |.+|++ .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99999999999999999999887 78899999999996 333 788887 689999
Q ss_pred cccCcccccccC
Q 002168 81 FRGNPIKIEFAR 92 (957)
Q Consensus 81 I~Gr~I~V~~A~ 92 (957)
|.|+.|+|.+-+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999863
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.99 E-value=6.7e-10 Score=105.86 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=65.1
Q ss_pred CCceEEEecCCCCC----CCCHHHHHHHHhhcCCeEEEEEeCC----------CcEEEEEeCCHHHHHHHHHHhCCCeeC
Q 002168 219 PPSKILWVGYPPSV----QMDEQMLHNAMILFGEIERIKSYPS----------RNYSFVEFRSVDEARRAKEGLQGRLFN 284 (957)
Q Consensus 219 ~ps~VL~Vgnpps~----~vtEeeLr~~Fs~fG~V~~VkI~~s----------rG~AFVeF~T~edA~~AIe~LNGk~f~ 284 (957)
.+++||++.|.... +-.+++|++.|++||.|.+|+|++. +|++||+|.+.++|.+|++.|||+.|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 36788888776432 1236899999999999999999732 489999999999999999999999999
Q ss_pred CCeEEEEeecC
Q 002168 285 DPRITIMFSSS 295 (957)
Q Consensus 285 Gr~I~V~~A~~ 295 (957)
|+.|+|.|...
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999843
No 363
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.99 E-value=7.8e-10 Score=104.81 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=63.5
Q ss_pred CCceEEEecCCCCCC---------CCHHHHHHHHhhcCCeEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhCCCeeCCCe
Q 002168 219 PPSKILWVGYPPSVQ---------MDEQMLHNAMILFGEIERIKSYPS--RNYSFVEFRSVDEARRAKEGLQGRLFNDPR 287 (957)
Q Consensus 219 ~ps~VL~Vgnpps~~---------vtEeeLr~~Fs~fG~V~~VkI~~s--rG~AFVeF~T~edA~~AIe~LNGk~f~Gr~ 287 (957)
.+++||++.|.-... --+++|++.|++||.|.+|.+.+. +|+|||+|.+.++|.+|++.|||+.|+|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 356777776654321 113588999999999999999764 799999999999999999999999999999
Q ss_pred EEEEeec
Q 002168 288 ITIMFSS 294 (957)
Q Consensus 288 I~V~~A~ 294 (957)
|+|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999984
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.98 E-value=1e-09 Score=102.29 Aligned_cols=77 Identities=16% Similarity=0.396 Sum_probs=67.0
Q ss_pred CCCCceEEcCC--CccCC--------HHHHHHhhcccCCEeEEEEeec--------CCceEEEeCCHHHHHHHHHHhCCc
Q 002168 95 KPSKHLWVGGI--SQTVS--------KEELEEGFLKFGNIEDFKFLKD--------GNTAFVEYSRLEDAAEALKNINGR 156 (957)
Q Consensus 95 ~~sr~LyVgNL--P~~vT--------eedL~elFskfG~I~~VkIlrd--------rG~AFVeF~t~edA~kAIe~LnG~ 156 (957)
.++++|.|.|+ +..+. ++||+++|++||.|.+|+|.++ +|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 33333 4689999999999999999865 588999999999999999999999
Q ss_pred eeCCeEEEEEEccCC
Q 002168 157 QIGGEQLRVDFLRSQ 171 (957)
Q Consensus 157 ~i~Gr~I~V~~ak~k 171 (957)
.+.||.|+|.|+...
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998643
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.95 E-value=9e-10 Score=123.04 Aligned_cols=76 Identities=21% Similarity=0.395 Sum_probs=68.8
Q ss_pred CCCCCceEEcC--CCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCcee---CCe--EEEEE
Q 002168 94 AKPSKHLWVGG--ISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQI---GGE--QLRVD 166 (957)
Q Consensus 94 ~~~sr~LyVgN--LP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i---~Gr--~I~V~ 166 (957)
..++++|||+| |+..+|+++|+++|++||.|++|.+..+||||||+|.+.++|++|++.|||+.+ .|+ .|.|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 57789999999 688999999999999999999999988999999999999999999999999977 245 67888
Q ss_pred Ecc
Q 002168 167 FLR 169 (957)
Q Consensus 167 ~ak 169 (957)
|..
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 874
No 366
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.93 E-value=8.4e-10 Score=106.27 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=64.8
Q ss_pred CceEEcCC----CccCCHHHHHHhhcccCCEeEEEEeecC------CceEEEeCC----HHH----HHHHHH--HhCCce
Q 002168 98 KHLWVGGI----SQTVSKEELEEGFLKFGNIEDFKFLKDG------NTAFVEYSR----LED----AAEALK--NINGRQ 157 (957)
Q Consensus 98 r~LyVgNL----P~~vTeedL~elFskfG~I~~VkIlrdr------G~AFVeF~t----~ed----A~kAIe--~LnG~~ 157 (957)
.+|||+|| ++.+++++|+++|+.||.|.+|.++.|+ |+|||+|.+ .++ |.+|++ .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999884 789999996 433 899998 789999
Q ss_pred eCCeEEEEEEccC
Q 002168 158 IGGEQLRVDFLRS 170 (957)
Q Consensus 158 i~Gr~I~V~~ak~ 170 (957)
|.|+.|+|.+-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999997654
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=5.9e-09 Score=96.48 Aligned_cols=77 Identities=19% Similarity=0.202 Sum_probs=64.1
Q ss_pred CCCCEEEEccCC-------CCCcHHHHHHHhccCCCeeEEEe-cCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccc
Q 002168 18 PPSSNLWVGNLS-------ADTTDADLKELFGKFGALDKVTT-YSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIE 89 (957)
Q Consensus 18 ~~s~tLfVgNLP-------~svTE~dL~e~FskfG~I~~V~~-grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~ 89 (957)
...++|.|.-.. ..+++++|+++|++||+|.+|.+ ++++|||||+|.+.++|.+|++.++ .+.|+.|+|.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~ 85 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKIS 85 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEE
Confidence 345677776654 45899999999999999999985 6899999999999999999997744 4679999999
Q ss_pred ccCCCCC
Q 002168 90 FARPAKP 96 (957)
Q Consensus 90 ~A~p~~~ 96 (957)
|+++...
T Consensus 86 ~a~~~~~ 92 (100)
T 2d9o_A 86 WLEGQPQ 92 (100)
T ss_dssp CSSCCCC
T ss_pred EccCCCC
Confidence 9976543
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=2.7e-09 Score=98.81 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHhhcCCeEEEEEe-CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCCC
Q 002168 233 QMDEQMLHNAMILFGEIERIKSY-PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 297 (957)
Q Consensus 233 ~vtEeeLr~~Fs~fG~V~~VkI~-~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~~ 297 (957)
.+++++|+++|++||.|.+|.++ +.+|||||+|.+.++|.+|++.+++ +.|+.|+|.|++.+.
T Consensus 28 ~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 48999999999999999999997 6789999999999999999998554 689999999987653
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.91 E-value=1.6e-09 Score=100.80 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=50.8
Q ss_pred HHHHHHH-hhcCCeEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEee
Q 002168 237 QMLHNAM-ILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 293 (957)
Q Consensus 237 eeLr~~F-s~fG~V~~VkI~~-----srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A 293 (957)
++|+++| ++||.|.+|++.+ ++|||||+|.+.++|.+|++.|||+.|+|+.|+|.|+
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 3444555 9999999999985 3799999999999999999999999999999999986
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.91 E-value=2.7e-09 Score=101.64 Aligned_cols=77 Identities=19% Similarity=0.375 Sum_probs=67.2
Q ss_pred CCCCceEEcCCCcc--C---CHHHHHHhhcccCCEeEEEEeecC----------CceEEEeCCHHHHHHHHHHhCCceeC
Q 002168 95 KPSKHLWVGGISQT--V---SKEELEEGFLKFGNIEDFKFLKDG----------NTAFVEYSRLEDAAEALKNINGRQIG 159 (957)
Q Consensus 95 ~~sr~LyVgNLP~~--v---TeedL~elFskfG~I~~VkIlrdr----------G~AFVeF~t~edA~kAIe~LnG~~i~ 159 (957)
.++++|+|.|+-.. + -++||++.|++||.|.+|+|.+++ |++||+|.+.++|.+|++.|||+.+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 36889999998422 2 368999999999999999998762 68999999999999999999999999
Q ss_pred CeEEEEEEccCC
Q 002168 160 GEQLRVDFLRSQ 171 (957)
Q Consensus 160 Gr~I~V~~ak~k 171 (957)
||.|+|.|+...
T Consensus 98 GR~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GRKVVAEVYDQE 109 (118)
T ss_dssp TEECEEEEECHH
T ss_pred CcEEEEEEcChH
Confidence 999999998653
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.88 E-value=4.9e-09 Score=99.32 Aligned_cols=78 Identities=14% Similarity=0.283 Sum_probs=67.2
Q ss_pred CCCCCceEEcCCCccCC----------HHHHHHhhcccCCEeEEEEeec--CCceEEEeCCHHHHHHHHHHhCCceeCCe
Q 002168 94 AKPSKHLWVGGISQTVS----------KEELEEGFLKFGNIEDFKFLKD--GNTAFVEYSRLEDAAEALKNINGRQIGGE 161 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vT----------eedL~elFskfG~I~~VkIlrd--rG~AFVeF~t~edA~kAIe~LnG~~i~Gr 161 (957)
..++++|.|.|+=.... ++||++.|++||.|.+|.+.++ +|+|||+|.+.++|.+|++.|||..++||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34578888888853222 4688999999999999999877 69999999999999999999999999999
Q ss_pred EEEEEEccCC
Q 002168 162 QLRVDFLRSQ 171 (957)
Q Consensus 162 ~I~V~~ak~k 171 (957)
.|+|.|+...
T Consensus 84 ~i~v~~~~~~ 93 (114)
T 3s6e_A 84 MITAAYVPLP 93 (114)
T ss_dssp ECEEEEECHH
T ss_pred EEEEEEEcHH
Confidence 9999998643
No 372
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.86 E-value=8.5e-10 Score=102.59 Aligned_cols=67 Identities=25% Similarity=0.552 Sum_probs=59.3
Q ss_pred EcCCCccCCHHHHHHhh------------cccCCEeEEEEeec-----CCceEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 002168 102 VGGISQTVSKEELEEGF------------LKFGNIEDFKFLKD-----GNTAFVEYSRLEDAAEALKNINGRQIGGEQLR 164 (957)
Q Consensus 102 VgNLP~~vTeedL~elF------------skfG~I~~VkIlrd-----rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~ 164 (957)
+.||+..+++++|++.| ++||.|.+|++.++ +|+|||+|.+.++|.+|++.|||+.+.|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777777877776666 99999999999976 58999999999999999999999999999999
Q ss_pred EEEc
Q 002168 165 VDFL 168 (957)
Q Consensus 165 V~~a 168 (957)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=5.7e-08 Score=92.84 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=70.2
Q ss_pred CCCCceEEcCCCcc-CCHHHHHHhhcccCCEeEEEEeecCCceEEEeCC-HHHHHHHHHHhC--CceeCCeEEEEEEccC
Q 002168 95 KPSKHLWVGGISQT-VSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSR-LEDAAEALKNIN--GRQIGGEQLRVDFLRS 170 (957)
Q Consensus 95 ~~sr~LyVgNLP~~-vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t-~edA~kAIe~Ln--G~~i~Gr~I~V~~ak~ 170 (957)
...+.|+|+||+.. +++++|+++|+.||.|..|.+.++..+|||+|.+ .++|..|++.+| +..|+|..+++.....
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 45789999999999 9999999999999999999999999999999999 899999999995 6688999998887664
Q ss_pred C
Q 002168 171 Q 171 (957)
Q Consensus 171 k 171 (957)
.
T Consensus 96 e 96 (121)
T 1owx_A 96 E 96 (121)
T ss_dssp H
T ss_pred H
Confidence 3
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=1.7e-07 Score=89.63 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=67.5
Q ss_pred CCCCCCEEEEccCCCC-CcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCC-HHHHHHHHHHhc--CCccccCccccccc
Q 002168 16 EAPPSSNLWVGNLSAD-TTDADLKELFGKFGALDKVTTYSSRSFAFVYFKR-VEDAKAAKDALQ--GSDFRGNPIKIEFA 91 (957)
Q Consensus 16 e~~~s~tLfVgNLP~s-vTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s-~edA~~AL~~Ln--g~~I~Gr~I~V~~A 91 (957)
.-.+++.|+|+||+.+ +++++|+++|++||+|..|...+....|||+|.+ .++|..|++.++ +..|+|..+.++..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 4578999999999999 9999999999999999999988888899999999 899999999984 66788877776654
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=1.6e-07 Score=84.95 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=52.5
Q ss_pred HHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeecCC
Q 002168 237 QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 296 (957)
Q Consensus 237 eeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~~~ 296 (957)
.+|.+.|+.||+|..+++..++ +||+|.+.++|.+|++ |||..++||.|+|.+++..
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 5789999999999999999655 8999999999999998 9999999999999998754
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=4e-07 Score=82.40 Aligned_cols=74 Identities=19% Similarity=0.344 Sum_probs=61.2
Q ss_pred CCCCceEEcCCC----ccCCH----HHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 002168 95 KPSKHLWVGGIS----QTVSK----EELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVD 166 (957)
Q Consensus 95 ~~sr~LyVgNLP----~~vTe----edL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~ 166 (957)
++..+|+|.-.+ .+.-. .+|.+.|..||.|..+++..++ +||+|.+.++|.+|++ |||..++||.|+|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 345566766554 23333 5789999999999999999876 9999999999999997 99999999999999
Q ss_pred EccCC
Q 002168 167 FLRSQ 171 (957)
Q Consensus 167 ~ak~k 171 (957)
+++..
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 87643
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.40 E-value=2.9e-07 Score=95.91 Aligned_cols=61 Identities=25% Similarity=0.327 Sum_probs=56.4
Q ss_pred CCHHHHHHHHhhcCCeEEEEEe----------CCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 002168 234 MDEQMLHNAMILFGEIERIKSY----------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 294 (957)
Q Consensus 234 vtEeeLr~~Fs~fG~V~~VkI~----------~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~ 294 (957)
-.+++|++.|++||.|.+++|. +++|++||+|.+.++|.+|++.|||+.|+||.|.+.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3568999999999999999996 457899999999999999999999999999999999974
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=7.5e-07 Score=81.08 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=59.6
Q ss_pred CCCCceEEEecCCCCC----CC-CH---HHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeE
Q 002168 217 DGPPSKILWVGYPPSV----QM-DE---QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRI 288 (957)
Q Consensus 217 ~~~ps~VL~Vgnpps~----~v-tE---eeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I 288 (957)
.++|.-+++|...++. .+ ++ .+|.+.|+.||+|..+++..++ +||+|.+.++|.+||+ |||..++||.|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 3455556666654321 12 21 4689999999999999999665 9999999999999998 99999999999
Q ss_pred EEEeec
Q 002168 289 TIMFSS 294 (957)
Q Consensus 289 ~V~~A~ 294 (957)
+|.+..
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 998864
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=1.4e-06 Score=79.23 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=60.7
Q ss_pred CCCCceEEcCCCcc-----CCH----HHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 002168 95 KPSKHLWVGGISQT-----VSK----EELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRV 165 (957)
Q Consensus 95 ~~sr~LyVgNLP~~-----vTe----edL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V 165 (957)
++..+|+|.-++.. +-. .+|.+.|..||.|..+++..++ +||+|.+.++|.+||+ |||..++||.|+|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V 89 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVKI 89 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEEE
Confidence 55678888877532 222 5688999999999999999886 9999999999999997 9999999999999
Q ss_pred EEc
Q 002168 166 DFL 168 (957)
Q Consensus 166 ~~a 168 (957)
++.
T Consensus 90 ~~k 92 (95)
T 1ufw_A 90 SGP 92 (95)
T ss_dssp ECC
T ss_pred ecc
Confidence 964
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.05 E-value=3.6e-06 Score=87.62 Aligned_cols=63 Identities=22% Similarity=0.381 Sum_probs=56.6
Q ss_pred CCHHHHHHhhcccCCEeEEEEeec----------CCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 002168 109 VSKEELEEGFLKFGNIEDFKFLKD----------GNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRSQ 171 (957)
Q Consensus 109 vTeedL~elFskfG~I~~VkIlrd----------rG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~k 171 (957)
-.+++|++.|++||.|.++.+.++ +|++||+|.+.++|.+|++.|||..+.||.|.+.|+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 356789999999999999999843 478999999999999999999999999999999998643
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=2.6e-05 Score=72.58 Aligned_cols=75 Identities=20% Similarity=0.199 Sum_probs=70.7
Q ss_pred CCCCCceEEcCCCccCCHHHHHHhhccc-----CCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 002168 94 AKPSKHLWVGGISQTVSKEELEEGFLKF-----GNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFL 168 (957)
Q Consensus 94 ~~~sr~LyVgNLP~~vTeedL~elFskf-----G~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~a 168 (957)
....++|-|-|||..+++..|+.+.+.+ |.|..|.+..|-+.|+|+|.+..+|-+|.-.|+|..|.|++|++.-.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 4557899999999999999999999999 99999999999999999999999999999999999999999999743
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=6.5e-05 Score=69.91 Aligned_cols=73 Identities=15% Similarity=0.075 Sum_probs=65.5
Q ss_pred CCCceEEEecCCCCCCCCHHHHHHHHhhc-----CCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEe
Q 002168 218 GPPSKILWVGYPPSVQMDEQMLHNAMILF-----GEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 292 (957)
Q Consensus 218 ~~ps~VL~Vgnpps~~vtEeeLr~~Fs~f-----G~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~ 292 (957)
..+..+-+.+++.. +++..|+.+++++ |.|++|.+.++.+-|+|+|.+...|-+|.-.|||.+|.|++|+|.=
T Consensus 19 ~~~rtiaL~~ipDt--vndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 19 ELETLICLFPLSDK--VSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTTSCEEEECCCTT--CCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cCCcEEEEecCCCC--CCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 34566667777665 9999999999999 9999999999999999999999999999999999999999999853
No 383
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=97.69 E-value=3.2e-05 Score=78.88 Aligned_cols=110 Identities=24% Similarity=0.467 Sum_probs=77.1
Q ss_pred ceEEeeee-cCCcceeeeEEeeccCCc-cccCC-----ceeccccccChhH-----HHHHhhhccCceEEEEcCCCch--
Q 002168 510 FIWRGIIA-KGGTPVCRARCVPFGKGI-ESELP-----EVVNCSARTGLDM-----LAKHYAEAIGFDIVFFLPDSED-- 575 (957)
Q Consensus 510 ~~w~g~ia-KgG~pvC~~~c~~v~~~~-~~~lP-----~~ldctaRt~ld~-----l~kh~~~a~~~~vvff~p~s~~-- 575 (957)
..|+|.++ |-=.--++.+|+-=..++ ..-|| ..|.+|+|-.||- +++-.....++-++.-+|+..+
T Consensus 38 ~~WqG~L~LKn~~f~v~mh~v~Gn~~l~~~~L~~~~~~~~LRItQRmRLd~~qLe~V~rRi~~~~~~cilLAlp~~~~~~ 117 (195)
T 1ow1_A 38 IVWQGLLALKNDTAAVQLHFVSGNNVLAHRSLPLSEGGPPLRIAQRMRLEATQLEGVARRMTVETDYCLLLALPCGRDQE 117 (195)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEECHHHHHHHSCCC---CCEEECEEEECSHHHHHHHHHHTSSTTTEEEEEEEECCSSHH
T ss_pred hhceeeeeeecchhhhEEEEEeCcHHHHHHhCCCCCCCCceeeehhhccChHHHHHHHHHHhCCCCceEEEEecCCCCch
Confidence 58999998 765555555554422222 12233 3678999988864 3444444457888888897743
Q ss_pred hh-----HhHHHHHHHhhccccceeeeecC------CceEEEeCCChhhhceeee
Q 002168 576 DF-----ASYTEFLRYLGSKNRAGVAKFDD------GTTLFLVPPSDFLSKVLKV 619 (957)
Q Consensus 576 D~-----~~y~ef~~YL~~K~Ra~v~k~~~------~~tlflvPPsdf~~~vlkv 619 (957)
|. .--+.|+.||.+|+-||||-+.. ...||+-||+||+.+-|+=
T Consensus 118 d~~~q~~~L~~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPCeFs~~~L~~ 172 (195)
T 1ow1_A 118 DVVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLSR 172 (195)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSSHHHHHHHHH
T ss_pred hhHhhhhHHHHHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCcHHHHHHHHH
Confidence 22 12456999999999999999954 5899999999999987753
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.00044 Score=63.81 Aligned_cols=90 Identities=18% Similarity=0.233 Sum_probs=76.4
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhcc-----CCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccCccccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGK-----FGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFA 91 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~Fsk-----fG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A 91 (957)
....++|.|.|||.++.++.|.-+|++ =|+|.+|.... +-|+|+|.+.+.|.+.| +.....|+|..|.|...
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL-~k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVL-AQADHELHGAQLSLRPA 81 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHH-TCSCCBSSSSBCEEEEC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHh-cCCcceecCeEEEEEcC
Confidence 356789999999999999999999986 26899998544 88999999999999999 55577899999999765
Q ss_pred CCCCCCCceEEcCCCccCC
Q 002168 92 RPAKPSKHLWVGGISQTVS 110 (957)
Q Consensus 92 ~p~~~sr~LyVgNLP~~vT 110 (957)
......+|++.||++.++
T Consensus 82 -~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 82 -PPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp -CCCCCCCCCCCSCCCCCC
T ss_pred -CCCCcceEeeecCCCCCC
Confidence 466778999999998764
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.24 E-value=0.0012 Score=61.17 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=65.8
Q ss_pred CCCceEEEecCCCCC-CCC--HHHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 002168 218 GPPSKILWVGYPPSV-QMD--EQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 294 (957)
Q Consensus 218 ~~ps~VL~Vgnpps~-~vt--EeeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~ 294 (957)
..|+++++.++..++ ..+ .+.++++|..|+++.....+++=.-..|.|.+.++|.+|...|++..|.|++++|-|+.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 456777877775543 111 25789999999999999999888889999999999999999999999999999999997
Q ss_pred C
Q 002168 295 S 295 (957)
Q Consensus 295 ~ 295 (957)
.
T Consensus 83 ~ 83 (104)
T 1wey_A 83 T 83 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.86 E-value=0.0018 Score=59.91 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=66.1
Q ss_pred CCceEEcCCCccC-C----HHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 002168 97 SKHLWVGGISQTV-S----KEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLRS 170 (957)
Q Consensus 97 sr~LyVgNLP~~v-T----eedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak~ 170 (957)
.++|+|.||+.++ + ++.++++|..|+.+....+++.=.-.-|.|.+.++|.+|-..|++..+.|+.|+|-|+..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4689999998766 2 357899999999999999988866799999999999999999999999999999999873
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.17 E-value=0.012 Score=55.88 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=59.3
Q ss_pred CCCceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCC-CeEEEEee
Q 002168 218 GPPSKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFND-PRITIMFS 293 (957)
Q Consensus 218 ~~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~G-r~I~V~~A 293 (957)
...+-|.+.|++++ .-..|.++|+.||+|.+.......++..|+|.+..+|++|+. .||..|+| ..|-|...
T Consensus 22 ~~~~wVtVFGFp~~---~~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQA---SASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGG---GHHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHH---HHHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 34567788888875 577889999999999999886678899999999999999986 59999985 55666553
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.13 E-value=0.011 Score=56.04 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=59.6
Q ss_pred CCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcCCccccC-cccccc
Q 002168 17 APPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQGSDFRGN-PIKIEF 90 (957)
Q Consensus 17 ~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng~~I~Gr-~I~V~~ 90 (957)
....+.|-|-|.|.+. .+.|.+.|++||+|.+.......+.-.|+|.+..+|.+|| ..||..|.|. -|-|.+
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 4567889999999885 5677789999999999887678889999999999999999 7899888653 344443
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.12 E-value=0.037 Score=51.07 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=61.3
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcc---c--CCEeEEEEeecCCceEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLK---F--GNIEDFKFLKDGNTAFVEYSRLEDAAEALKNINGRQIGGEQLRVDFLR 169 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFsk---f--G~I~~VkIlrdrG~AFVeF~t~edA~kAIe~LnG~~i~Gr~I~V~~ak 169 (957)
...++|.|.|||..+.++.|+-+|++ - |.|++++... +.|+|+|.+.+.|++.++ -..+.+++..|.|....
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCC
Confidence 34679999999999999999999987 2 4899988766 899999999999999995 33568888999997654
Q ss_pred CC
Q 002168 170 SQ 171 (957)
Q Consensus 170 ~k 171 (957)
..
T Consensus 83 ~~ 84 (104)
T 2dhx_A 83 PR 84 (104)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.09 E-value=0.019 Score=52.06 Aligned_cols=62 Identities=18% Similarity=0.337 Sum_probs=54.7
Q ss_pred CceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC--------CceEEEeCCHHHHHHHHHHhCCceeC
Q 002168 98 KHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG--------NTAFVEYSRLEDAAEALKNINGRQIG 159 (957)
Q Consensus 98 r~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr--------G~AFVeF~t~edA~kAIe~LnG~~i~ 159 (957)
.+|.|++||+.+|++++.+.+..+..+....+...+ ..|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 478999999999999999999999888877776553 23999999999999999999999773
No 391
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.97 E-value=0.016 Score=52.52 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=52.9
Q ss_pred CEEEEccCCCCCcHHHHHHHhccCCCeeEEE--ecC------CCcEEEEEeCCHHHHHHHHHHhcCCccccC
Q 002168 21 SNLWVGNLSADTTDADLKELFGKFGALDKVT--TYS------SRSFAFVYFKRVEDAKAAKDALQGSDFRGN 84 (957)
Q Consensus 21 ~tLfVgNLP~svTE~dL~e~FskfG~I~~V~--~gr------skGyAFVeF~s~edA~~AL~~Lng~~I~Gr 84 (957)
++|.|++||+++||+++.+.+..+.+++-.. -|+ .-+.|||.|.+.+++....+..+|..+...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5899999999999999999999998776444 122 235799999999999999999999887443
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.67 E-value=0.026 Score=51.59 Aligned_cols=58 Identities=24% Similarity=0.368 Sum_probs=45.8
Q ss_pred CCCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhC
Q 002168 95 KPSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNIN 154 (957)
Q Consensus 95 ~~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~Ln 154 (957)
.....||+-+.|+++...||.++|+.||.| .|+.+.| ..|||.|.+.+.|..|+..++
T Consensus 13 p~r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidD-TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD-TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEET-TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 334445555999999999999999999954 4444443 589999999999999998763
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.90 E-value=0.021 Score=54.97 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=55.6
Q ss_pred CCceEEEecCCCCCCCCHHHHHHHHhhcCCeEE-EEE----------------eC---CCcEEEEEeCCHHHHHHHHHHh
Q 002168 219 PPSKILWVGYPPSVQMDEQMLHNAMILFGEIER-IKS----------------YP---SRNYSFVEFRSVDEARRAKEGL 278 (957)
Q Consensus 219 ~ps~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~-VkI----------------~~---srG~AFVeF~T~edA~~AIe~L 278 (957)
..+-|++.|++++ ....+-+.|++||.|.+ +.. .+ ..++.-|+|++..+|.+|+. -
T Consensus 6 ~e~~VtVFGFp~~---~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~ 81 (132)
T 3p3d_A 6 GELAILVFGYPET---MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-E 81 (132)
T ss_dssp --CEEEEECCCGG---GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-T
T ss_pred CceEEEEEecCHH---HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-h
Confidence 4467888899765 67778899999999876 211 11 46799999999999999986 5
Q ss_pred CCCeeCCCeEEEEee
Q 002168 279 QGRLFNDPRITIMFS 293 (957)
Q Consensus 279 NGk~f~Gr~I~V~~A 293 (957)
||+.|+|..|-|...
T Consensus 82 NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 82 NGAVFNGVLLGVIPY 96 (132)
T ss_dssp TTCEETTEECEEEEC
T ss_pred CCeEeCcEEEEEEEC
Confidence 999999988777665
No 394
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.24 E-value=0.026 Score=65.19 Aligned_cols=54 Identities=15% Similarity=0.300 Sum_probs=43.0
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCc-EEEEEeCCHHHHHHHH
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRS-FAFVYFKRVEDAKAAK 73 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskG-yAFVeF~s~edA~~AL 73 (957)
..++|+|. .|..+++.+|.++|++||+|.++...+++| ||.|+|.+.+++.+++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHH
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHH
Confidence 46899997 799999999999999999999999777666 9999999999999877
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.04 E-value=0.15 Score=46.53 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=47.5
Q ss_pred CCCCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhc
Q 002168 16 EAPPSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQ 77 (957)
Q Consensus 16 e~~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Ln 77 (957)
.......++| +.|.++.-.||.++|+.||.|. |+.- +-..|||.|.+.+.|..|+..+.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wi-dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWI-DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEE-ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEE-cCCeEEEEecCHHHHHHHHHhcc
Confidence 3556677777 9999999999999999999665 3311 34579999999999999997653
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.97 E-value=0.13 Score=47.10 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=54.9
Q ss_pred CCCceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecC--------CceEEEeCCHHHHHHHHHHhCCceeCC-----eE
Q 002168 96 PSKHLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDG--------NTAFVEYSRLEDAAEALKNINGRQIGG-----EQ 162 (957)
Q Consensus 96 ~sr~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdr--------G~AFVeF~t~edA~kAIe~LnG~~i~G-----r~ 162 (957)
.+-+|.|+.||+.+|++++.+.+...=.+....+...+ ..|||.|.+.++.....+.++|..+-+ ..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 35689999999999999999888876555443333221 249999999999999999999997732 34
Q ss_pred EEEEEc
Q 002168 163 LRVDFL 168 (957)
Q Consensus 163 I~V~~a 168 (957)
..|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 445555
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.11 E-value=0.089 Score=48.21 Aligned_cols=53 Identities=28% Similarity=0.424 Sum_probs=43.8
Q ss_pred ceEEcCCCccCCHHHHHHhhcccCCEeEEEEeecCCceEEEeCCHHHHHHHHHHhC
Q 002168 99 HLWVGGISQTVSKEELEEGFLKFGNIEDFKFLKDGNTAFVEYSRLEDAAEALKNIN 154 (957)
Q Consensus 99 ~LyVgNLP~~vTeedL~elFskfG~I~~VkIlrdrG~AFVeF~t~edA~kAIe~Ln 154 (957)
.++| +.|+++...||.++|+.||.| .|+.+.| ..|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 3455 999999999999999999943 4555544 589999999999999998764
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.08 E-value=0.081 Score=48.37 Aligned_cols=66 Identities=21% Similarity=0.232 Sum_probs=50.6
Q ss_pred CCCCEEEEccCCCCCcHHHHHHHhccCCCeeEEE--ecC------CCcEEEEEeCCHHHHHHHHHHhcCCcccc
Q 002168 18 PPSSNLWVGNLSADTTDADLKELFGKFGALDKVT--TYS------SRSFAFVYFKRVEDAKAAKDALQGSDFRG 83 (957)
Q Consensus 18 ~~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~--~gr------skGyAFVeF~s~edA~~AL~~Lng~~I~G 83 (957)
.-+-+|.|+.||+++||+++.+.+..+-+++-.. -|+ .-..|||.|.+.++.....+..+|..+-+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 3567899999999999999988887765543222 111 22569999999999999999999887643
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.94 E-value=0.1 Score=50.15 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=52.7
Q ss_pred CCEEEEccCCCCCcHHHHHHHhccCCCeeE-EEec-------------------CCCcEEEEEeCCHHHHHHHHHHhcCC
Q 002168 20 SSNLWVGNLSADTTDADLKELFGKFGALDK-VTTY-------------------SSRSFAFVYFKRVEDAKAAKDALQGS 79 (957)
Q Consensus 20 s~tLfVgNLP~svTE~dL~e~FskfG~I~~-V~~g-------------------rskGyAFVeF~s~edA~~AL~~Lng~ 79 (957)
...|.|-|.|.+.+. .|.+.|++||.|.+ +... ...+...|+|.+..+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 456778888766554 56689999999875 2110 14567799999999999999 88999
Q ss_pred ccccCccccccc
Q 002168 80 DFRGNPIKIEFA 91 (957)
Q Consensus 80 ~I~Gr~I~V~~A 91 (957)
.|.|.-|-|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 998876666654
No 400
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=90.32 E-value=0.22 Score=45.64 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=44.0
Q ss_pred ceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhC
Q 002168 221 SKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQ 279 (957)
Q Consensus 221 s~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LN 279 (957)
..|++++++++ +.-.||.++|+.||.| .|+=+ +-.-|||.|.+.+.|..|+..++
T Consensus 6 ~HV~~l~FP~e--wKt~Di~~lFs~fggv-~I~Wi-dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHVTFPKE--WKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEECCTT--CCHHHHHHHTTTSEEE-EEEEE-ETTEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEEeCChh--hhhHHHHHHHhccCCE-EEEEE-cCCeEEEEecCHHHHHHHHHhcc
Confidence 46888899887 8889999999999833 22222 24689999999999999999875
No 401
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=90.15 E-value=0.14 Score=59.18 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=40.1
Q ss_pred ceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCCCc-EEEEEeCCHHHHHHHHH
Q 002168 221 SKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRN-YSFVEFRSVDEARRAKE 276 (957)
Q Consensus 221 s~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~srG-~AFVeF~T~edA~~AIe 276 (957)
.+.++|..+.. +++.+|.+.|++||.|.++...+++| ||.|||.+.+++..++.
T Consensus 53 ~rsv~v~~~~~--~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIHCPEK--ISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEEECCC-----CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEEcCCC--CCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 45567777654 99999999999999999999988776 99999999999886643
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=63.67 E-value=16 Score=42.52 Aligned_cols=57 Identities=23% Similarity=0.376 Sum_probs=45.7
Q ss_pred CCCEEEEccCCCCCcHHHHHHHhccCCCeeEEEecCCCcEEEEEeCCHHHHHHHHHHhcC
Q 002168 19 PSSNLWVGNLSADTTDADLKELFGKFGALDKVTTYSSRSFAFVYFKRVEDAKAAKDALQG 78 (957)
Q Consensus 19 ~s~tLfVgNLP~svTE~dL~e~FskfG~I~~V~~grskGyAFVeF~s~edA~~AL~~Lng 78 (957)
....++|+ +|..+...+|.+.|+.||.+. |+ .-+...|||.|.+.+.|..+++.++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~-widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-IS-WIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EE-ECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EE-EEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 34566665 999999999999999999654 54 22556799999999999999988753
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=53.06 E-value=26 Score=29.56 Aligned_cols=68 Identities=10% Similarity=0.104 Sum_probs=44.7
Q ss_pred EEecCCCCCCCCHHHHHHHHhhcCC-----eEEEEEeCCCcEEEEEeCCHHHHHHHHHHhCCCeeCCCeEEEEeec
Q 002168 224 LWVGYPPSVQMDEQMLHNAMILFGE-----IERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 294 (957)
Q Consensus 224 L~Vgnpps~~vtEeeLr~~Fs~fG~-----V~~VkI~~srG~AFVeF~T~edA~~AIe~LNGk~f~Gr~I~V~~A~ 294 (957)
|+++......+...+|..++..-+. |-.|++. -.|.||+-... .|..+++.|++..+.|+.+.|+.++
T Consensus 3 ~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 3 LYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 4555544445777788888875544 6677776 45888888765 5777889999999999999997764
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=52.98 E-value=30 Score=40.32 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=45.0
Q ss_pred ceEEEecCCCCCCCCHHHHHHHHhhcCCeEEEEEeCCCcEEEEEeCCHHHHHHHHHHhC
Q 002168 221 SKILWVGYPPSVQMDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQ 279 (957)
Q Consensus 221 s~VL~Vgnpps~~vtEeeLr~~Fs~fG~V~~VkI~~srG~AFVeF~T~edA~~AIe~LN 279 (957)
..++++++++. +...+|.++|+.||.| +|+-+ +...|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~f~~~--~~~~~i~~~fs~fg~v-~V~wi-ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVTFPKE--WKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEECCTT--CCHHHHHHHGGGGCCC-EEEEC-SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEeCCCC--CCHHHHHHHHHhcCCE-EEEEE-cCCeEEEEECCHHHHHHHHHHHH
Confidence 46888887775 7889999999999954 44333 45789999999999999999885
No 405
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=46.07 E-value=12 Score=41.75 Aligned_cols=55 Identities=29% Similarity=0.704 Sum_probs=37.6
Q ss_pred HHHHH-hhhccCceEEEEcCCCchhhHhHHHHHHHhhcc--ccceeeeecCCceEEEeCCChhhhce
Q 002168 553 MLAKH-YAEAIGFDIVFFLPDSEDDFASYTEFLRYLGSK--NRAGVAKFDDGTTLFLVPPSDFLSKV 616 (957)
Q Consensus 553 ~l~kh-~~~a~~~~vvff~p~s~~D~~~y~ef~~YL~~K--~Ra~v~k~~~~~tlflvPPsdf~~~v 616 (957)
|-+++ -.+.....|-.|-|. .++|.-|..||.|+.++ .++|+||+ |||-+|....
T Consensus 4 ~~~~~~~~~~~~~~ipvF~PT-~eEF~df~~Yi~~ie~~Ga~~~Gi~KI--------IPP~~W~~r~ 61 (354)
T 3dxt_A 4 MKSKANCAQNPNCNIMIFHPT-KEEFNDFDKYIAYMESQGAHRAGLAKI--------IPPKEWKARE 61 (354)
T ss_dssp -------CCCTTCCCEEECCC-TTGGGCHHHHHHHHHHTTGGGGSEEEE--------CCCTTCCSSS
T ss_pred cccCCCCCCCCCCCcceecCC-HHHHhCHHHHHHHHHhccccccCcccc--------cCcccccCcc
Confidence 33444 344567788889885 55677777777777765 59999998 9999998753
No 406
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=37.26 E-value=15 Score=41.21 Aligned_cols=44 Identities=32% Similarity=0.738 Sum_probs=33.3
Q ss_pred cCceEEEEcCCCchhhHhHHHHHHHhhcc--ccceeeeecCCceEEEeCCChhhh
Q 002168 562 IGFDIVFFLPDSEDDFASYTEFLRYLGSK--NRAGVAKFDDGTTLFLVPPSDFLS 614 (957)
Q Consensus 562 ~~~~vvff~p~s~~D~~~y~ef~~YL~~K--~Ra~v~k~~~~~tlflvPPsdf~~ 614 (957)
.+-.|..|-|- .++|.-+..||.++.++ .++|+||+ |||.+|..
T Consensus 32 ~~~~iPVF~PT-~EEF~Df~~YI~kIe~~gA~~~GI~KI--------IPP~~W~p 77 (381)
T 2ox0_A 32 PSARIMTFYPT-MEEFRNFSRYIAYIESQGAHRAGLAKV--------VPPKEWKP 77 (381)
T ss_dssp TTCCCEEECCC-HHHHSCHHHHHHHHHHTTGGGGSEEEE--------CCCTTCCS
T ss_pred CCCCCceEcCC-HHHHhCHHHHHHHHHhccccccCceee--------cCCccCCC
Confidence 45577788884 56677677777777665 59999998 99999853
No 407
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=31.87 E-value=3e+02 Score=25.48 Aligned_cols=108 Identities=11% Similarity=0.001 Sum_probs=59.7
Q ss_pred cHHHHHHHhccCC-CeeEEEecCCC--cEEEEEeCCHHHHHHHHHHhcCCccccCcccccccCCCCCCCceEEcCCCccC
Q 002168 33 TDADLKELFGKFG-ALDKVTTYSSR--SFAFVYFKRVEDAKAAKDALQGSDFRGNPIKIEFARPAKPSKHLWVGGISQTV 109 (957)
Q Consensus 33 TE~dL~e~FskfG-~I~~V~~grsk--GyAFVeF~s~edA~~AL~~Lng~~I~Gr~I~V~~A~p~~~sr~LyVgNLP~~v 109 (957)
.-.+|...|.+.| .|+.|...... ++.-+.+.+.+.|.++|+.. |...... .+..-+++...
T Consensus 19 ~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d~~~a~~~L~~~-G~~v~~~--------------svv~v~~~d~p 83 (144)
T 2f06_A 19 RLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPDKAYKALKDN-HFAVNIT--------------DVVGISCPNVP 83 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHHHHHHHHHHT-TCCEEEE--------------EEEEEEEESST
T ss_pred HHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCCHHHHHHHHHHc-CCeEeee--------------eEEEEEeCCCC
Confidence 3466777777665 56766543333 33223367788888888643 2211100 12221333222
Q ss_pred -CHHHHHHhhcccC-CEeEEEEe-ec-CCceEEEeCCHHHHHHHHHHhCCc
Q 002168 110 -SKEELEEGFLKFG-NIEDFKFL-KD-GNTAFVEYSRLEDAAEALKNINGR 156 (957)
Q Consensus 110 -TeedL~elFskfG-~I~~VkIl-rd-rG~AFVeF~t~edA~kAIe~LnG~ 156 (957)
.-.++.+.+...| .|..+... .. +..+.+++.+.+.|.++++. .|.
T Consensus 84 Gvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~ 133 (144)
T 2f06_A 84 GALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKV 133 (144)
T ss_dssp THHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTC
T ss_pred cHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCC
Confidence 2356667777777 67565444 22 34567788888888888865 344
No 408
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=22.49 E-value=28 Score=38.91 Aligned_cols=41 Identities=32% Similarity=0.704 Sum_probs=27.0
Q ss_pred EEEEcCCCc--hhhHhHHHHHHHhhccccceeeeecCCceEEEeCCChhhhce
Q 002168 566 IVFFLPDSE--DDFASYTEFLRYLGSKNRAGVAKFDDGTTLFLVPPSDFLSKV 616 (957)
Q Consensus 566 vvff~p~s~--~D~~~y~ef~~YL~~K~Ra~v~k~~~~~tlflvPPsdf~~~v 616 (957)
|=.|=|--| .||..|.+.|+=.|. ++|+||+ |||-+|....
T Consensus 14 ~pVF~PT~eeF~dF~~yi~~i~~~g~--~~Gi~KV--------IPPkeW~~~~ 56 (373)
T 3opt_A 14 VPVFKPTYEQFEDFYAYCKAINKYGM--KSGVVKV--------IPPKEWKDKL 56 (373)
T ss_dssp SEEECCCHHHHTCHHHHHHTTHHHHT--TSSEEEE--------CCCHHHHTTS
T ss_pred CCeeCCCHHHHhCHHHHHHHHHHhcc--ccCeEEE--------eCchhhhhcc
Confidence 344555332 245555555555554 7999998 9999998774
Done!