BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002169
(957 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 255 bits (652), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 175/251 (69%), Gaps = 1/251 (0%)
Query: 613 ALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAF 672
+L + + DF A + PSA+RE ++EVP+V WED+GG +VK +L E V++P +H + F
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
Query: 673 KRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLF 732
+ G P G+L +GPPGC KTL+A+A+A+E NF+++KGPEL + W GESE VR +F
Sbjct: 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563
Query: 733 AKARANAPSIIFFDEIDGLAAIR-GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791
KAR AP ++FFDE+D +A R G DG +DRV++Q+L E+DG+ + NV +I AT
Sbjct: 564 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623
Query: 792 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCT 851
NRPD IDPA+LRPGR D+L+Y+ P+E R I + +LRK P + DV++ LA ++ G +
Sbjct: 624 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFS 683
Query: 852 GADISLICREA 862
GAD++ IC+ A
Sbjct: 684 GADLTEICQRA 694
Score = 223 bits (569), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 154/231 (66%), Gaps = 2/231 (0%)
Query: 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 701
+V ++D+GG R+ Q+ E VE P +H FK IG +PP GIL++GPPG KTL+ARAVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 702 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 761
+E G F + GPE+ SK GESE +R F +A NAP+IIF DE+D +A R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG- 318
Query: 762 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDR 821
V R++SQLL +DGL QR +V V+AATNRP+ IDPAL R GRFDR + +G P+ T R
Sbjct: 319 -EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 822 EEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 872
EI +IH + + + DV++ ++A + G GAD++ +C EAA+ AI + +D
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 202 bits (515), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 140/191 (73%), Gaps = 1/191 (0%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
+P +G+LL+GPPGTGKT +AR A+++G F +NGPE++S+ GESE L + F+ A +
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446
+APA++FIDELDAIAP R+ E+ +R+V+ LL LMDG+ + V+V+AATNRP+SI+P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAAL 506
ALRR GR DRE++I +P RLEIL M+ + D ++E ++ THG VGADLAAL
Sbjct: 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL 414
Query: 507 CNEAALVCLRR 517
C+EAAL +R+
Sbjct: 415 CSEAALQAIRK 425
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 387
P+KGVL +GPPG GKT LA+ A++ N ++ GPE+++ +GESE + E+FD A Q+
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA 569
Query: 388 APAVVFIDELDAIAPARKDGGEEL---SQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444
AP V+F DELD+IA AR + + R++ +L MDG+ V +I ATNRPD I
Sbjct: 570 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629
Query: 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLA 504
+PA+ RPGRLD+ I I +P R+ IL A L + D ++E+L+ T+GF GADL
Sbjct: 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLT 688
Query: 505 ALCNEA 510
+C A
Sbjct: 689 EICQRA 694
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 255 bits (652), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 175/251 (69%), Gaps = 1/251 (0%)
Query: 613 ALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAF 672
+L + + DF A + PSA+RE ++EVP+V WED+GG +VK +L E V++P +H + F
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKF 503
Query: 673 KRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLF 732
+ G P G+L +GPPGC KTL+A+A+A+E NF+++KGPEL + W GESE VR +F
Sbjct: 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIF 563
Query: 733 AKARANAPSIIFFDEIDGLAAIR-GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791
KAR AP ++FFDE+D +A R G DG +DRV++Q+L E+DG+ + NV +I AT
Sbjct: 564 DKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623
Query: 792 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCT 851
NRPD IDPA+LRPGR D+L+Y+ P+E R I + +LRK P + DV++ LA ++ G +
Sbjct: 624 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFS 683
Query: 852 GADISLICREA 862
GAD++ IC+ A
Sbjct: 684 GADLTEICQRA 694
Score = 224 bits (571), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 154/231 (66%), Gaps = 2/231 (0%)
Query: 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 701
+V ++DVGG R+ Q+ E VE P +H FK IG +PP GIL++GPPG KTL+ARAVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 702 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 761
+E G F + GPE+ SK GESE +R F +A NAP+IIF DE+D +A R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG- 318
Query: 762 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDR 821
V R++SQLL +DGL QR +V V+AATNRP+ IDPAL R GRFDR + +G P+ T R
Sbjct: 319 -EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 822 EEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 872
EI +IH + + + DV++ ++A + G GAD++ +C EAA+ AI + +D
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 202 bits (515), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 140/191 (73%), Gaps = 1/191 (0%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
+P +G+LL+GPPGTGKT +AR A+++G F +NGPE++S+ GESE L + F+ A +
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446
+APA++FIDELDAIAP R+ E+ +R+V+ LL LMDG+ + V+V+AATNRP+SI+P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAAL 506
ALRR GR DRE++I +P RLEIL M+ + D ++E ++ THG VGADLAAL
Sbjct: 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL 414
Query: 507 CNEAALVCLRR 517
C+EAAL +R+
Sbjct: 415 CSEAALQAIRK 425
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 387
P+KGVL +GPPG GKT LA+ A++ N ++ GPE+++ +GESE + E+FD A Q+
Sbjct: 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA 569
Query: 388 APAVVFIDELDAIAPARKDGGEEL---SQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444
AP V+F DELD+IA AR + + R++ +L MDG+ V +I ATNRPD I
Sbjct: 570 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629
Query: 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLA 504
+PA+ RPGRLD+ I I +P R+ IL A L + D ++E+L+ T+GF GADL
Sbjct: 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLT 688
Query: 505 ALCNEA 510
+C A
Sbjct: 689 EICQRA 694
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 247 bits (631), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 114/232 (49%), Positives = 165/232 (71%), Gaps = 1/232 (0%)
Query: 632 AMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGC 691
A+RE ++EVP+V WED+GG +VK +L E V++P +H + F + G P G+L +GPPGC
Sbjct: 1 ALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGC 60
Query: 692 SKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGL 751
KTL+A+A+A+E NF+++KGPEL + W GESE VR +F KAR AP ++FFDE+D +
Sbjct: 61 GKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSI 120
Query: 752 AAIR-GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRL 810
A R G DG +DRV++Q+L E+DG+ + NV +I ATNRPD IDPA+LRPGR D+L
Sbjct: 121 AKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 180
Query: 811 LYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREA 862
+Y+ P+E R I + +LRK P + DV++ LA ++ G +GAD++ IC+ A
Sbjct: 181 IYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232
Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/186 (44%), Positives = 117/186 (62%), Gaps = 4/186 (2%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 387
P+KGVL +GPPG GKT LA+ A++ N ++ GPE+++ +GESE + E+FD A Q+
Sbjct: 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA 107
Query: 388 APAVVFIDELDAIAPARKDGGEEL---SQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444
AP V+F DELD+IA AR + + R++ +L MDG+ V +I ATNRPD I
Sbjct: 108 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167
Query: 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLA 504
+PA+ RPGRLD+ I I +P R+ IL A L + D ++E+L+ T+GF GADL
Sbjct: 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLT 226
Query: 505 ALCNEA 510
+C A
Sbjct: 227 EICQRA 232
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 239 bits (609), Expect = 7e-63, Method: Composition-based stats.
Identities = 120/263 (45%), Positives = 169/263 (64%), Gaps = 12/263 (4%)
Query: 633 MREVILEV---PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPP 689
MR +EV P V++ED+GG + ++ E VE P KH E F+++G PP GIL++GPP
Sbjct: 1 MRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPP 60
Query: 690 GCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEID 749
G KTL+A+AVA+E F+ V G EL K++GE V+ +F A+ APSIIF DEID
Sbjct: 61 GTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEID 120
Query: 750 GLAAIRGKESDGVSVSD----RVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPG 805
+AA K +D ++ D R + QLL E+DG R +V +I ATNRPD +DPA+LRPG
Sbjct: 121 AIAA---KRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPG 177
Query: 806 RFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAIS 865
RFDR++ V P+E R EI +IH RK+ + DVN+ E+A ++EGC GA++ IC EA ++
Sbjct: 178 RFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMN 237
Query: 866 AIEENLDASRITMQHLKTAIRHV 888
AI E D +TM + A+ +
Sbjct: 238 AIRELRD--YVTMDDFRKAVEKI 258
Score = 153 bits (386), Expect = 5e-37, Method: Composition-based stats.
Identities = 85/202 (42%), Positives = 115/202 (56%), Gaps = 4/202 (1%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 387
P KG+LL+GPPGTGKT LA+ A ++ V G E+V + GE + ++F A +
Sbjct: 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEK 109
Query: 388 APAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444
AP+++FIDE+DAIA R D GG+ QR + LL MDG V +I ATNRPD +
Sbjct: 110 APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169
Query: 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLA 504
+PA+ RPGR DR IE+ P RLEIL M + D +E ++ T G VGA+L
Sbjct: 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELK 228
Query: 505 ALCNEAALVCLRRYSKIQTSSD 526
A+C EA + +R T D
Sbjct: 229 AICTEAGMNAIRELRDYVTMDD 250
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 172/268 (64%), Gaps = 16/268 (5%)
Query: 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMA 697
+ VP V W D+G +++ +L A+ P ++ + FK +G P G+L+ GPPGC KTL+A
Sbjct: 2 MTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61
Query: 698 RAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK 757
+AVA+E+GLNF++VKGPEL + +VGESE+AVR +F +A+ +AP +IFFDE+D L R
Sbjct: 62 KAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD 121
Query: 758 ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPN 817
G SV RV++QLL E+DGL R V ++AATNRPD IDPA+LRPGR D+ L+VG P
Sbjct: 122 RETGASV--RVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPP 179
Query: 818 ETDREEIFRIHLR---KIPCSSDVNIRELAC-LSEGC-TGADISLICREAAISAIEENLD 872
DR I + + K P +DVN+ +A L C TGAD+S + REA+I A+ + +
Sbjct: 180 PADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239
Query: 873 AS---------RITMQHLKTAIRHVQPS 891
+++ +H + A + V+ S
Sbjct: 240 RQKSGNEKGELKVSHKHFEEAFKKVRSS 267
Score = 166 bits (421), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 89/200 (44%), Positives = 124/200 (62%), Gaps = 4/200 (2%)
Query: 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPA 390
GVLL GPPG GKT LA+ A++SG+N +V GPE+++ GESE+A+ +VF A SAP
Sbjct: 46 GVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105
Query: 391 VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRR 450
V+F DE+DA+ P R D S R+V LL MDG+ V ++AATNRPD I+PA+ R
Sbjct: 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILR 165
Query: 451 PGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA----THGFVGADLAAL 506
PGRLD+ + + +P PA RL IL + LD++V ++A + GADL+AL
Sbjct: 166 PGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSAL 225
Query: 507 CNEAALVCLRRYSKIQTSSD 526
EA++ LR+ Q S +
Sbjct: 226 VREASICALRQEMARQKSGN 245
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 154/231 (66%), Gaps = 2/231 (0%)
Query: 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 701
+V ++DVGG R+ Q+ E VE P +H FK IG +PP GIL++GPPG KTL+ARAVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 702 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 761
+E G F + GPE+ SK GESE +R F +A NAP+IIF DE+D +A R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG- 318
Query: 762 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDR 821
V R++SQLL +DGL QR +V V+AATNRP+ IDPAL R GRFDR + +G P+ T R
Sbjct: 319 -EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 822 EEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 872
EI +IH + + + DV++ ++A + G GAD++ +C EAA+ AI + +D
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 202 bits (514), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 140/191 (73%), Gaps = 1/191 (0%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
+P +G+LL+GPPGTGKT +AR A+++G F +NGPE++S+ GESE L + F+ A +
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446
+APA++FIDELDAIAP R+ E+ +R+V+ LL LMDG+ + V+V+AATNRP+SI+P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAAL 506
ALRR GR DRE++I +P RLEIL M+ + D ++E ++ THG VGADLAAL
Sbjct: 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL 414
Query: 507 CNEAALVCLRR 517
C+EAAL +R+
Sbjct: 415 CSEAALQAIRK 425
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 154/231 (66%), Gaps = 2/231 (0%)
Query: 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 701
+V ++D+GG R+ Q+ E VE P +H FK IG +PP GIL++GPPG KTL+ARAVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 702 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 761
+E G F + GPE+ SK GESE +R F +A NAP+IIF DE+D +A R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG- 318
Query: 762 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDR 821
V R++SQLL +DGL QR +V V+AATNRP+ IDPAL R GRFDR + +G P+ T R
Sbjct: 319 -EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 822 EEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 872
EI +IH + + + DV++ ++A + G GAD++ +C EAA+ AI + +D
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 202 bits (514), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 140/191 (73%), Gaps = 1/191 (0%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
+P +G+LL+GPPGTGKT +AR A+++G F +NGPE++S+ GESE L + F+ A +
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446
+APA++FIDELDAIAP R+ E+ +R+V+ LL LMDG+ + V+V+AATNRP+SI+P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAAL 506
ALRR GR DRE++I +P RLEIL M+ + D ++E ++ THG VGADLAAL
Sbjct: 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL 414
Query: 507 CNEAALVCLRR 517
C+EAAL +R+
Sbjct: 415 CSEAALQAIRK 425
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 613 ALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQ 651
+L + + DF A + PSA+RE ++EVP+V WED+GG+
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGR 482
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 154/231 (66%), Gaps = 2/231 (0%)
Query: 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 701
+V ++D+GG R+ Q+ E VE P +H FK IG +PP GIL++GPPG KTL+ARAVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 702 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 761
+E G F + GPE+ SK GESE +R F +A NAP+IIF DE+D +A R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG- 318
Query: 762 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDR 821
V R++SQLL +DGL QR +V V+AATNRP+ IDPAL R GRFDR + +G P+ T R
Sbjct: 319 -EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 822 EEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 872
EI +IH + + + DV++ ++A + G GAD++ +C EAA+ AI + +D
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 202 bits (514), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 140/191 (73%), Gaps = 1/191 (0%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
+P +G+LL+GPPGTGKT +AR A+++G F +NGPE++S+ GESE L + F+ A +
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446
+APA++FIDELDAIAP R+ E+ +R+V+ LL LMDG+ + V+V+AATNRP+SI+P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAAL 506
ALRR GR DRE++I +P RLEIL M+ + D ++E ++ THG VGADLAAL
Sbjct: 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL 414
Query: 507 CNEAALVCLRR 517
C+EAAL +R+
Sbjct: 415 CSEAALQAIRK 425
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 613 ALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQ 651
+L + + DF A + PSA+RE ++EVP+V WED+GG+
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGR 482
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 223 bits (569), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 154/231 (66%), Gaps = 2/231 (0%)
Query: 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 701
+V ++D+GG R+ Q+ E VE P +H FK IG +PP GIL++GPPG KTL+ARAVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 702 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 761
+E G F + GPE+ SK GESE +R F +A NAP+IIF DE+D +A R K
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG- 318
Query: 762 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDR 821
V R++SQLL +DGL QR +V V+AATNRP+ IDPAL R GRFDR + +G P+ T R
Sbjct: 319 -EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377
Query: 822 EEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 872
EI +IH + + + DV++ ++A + G GAD++ +C EAA+ AI + +D
Sbjct: 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Score = 202 bits (513), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 140/191 (73%), Gaps = 1/191 (0%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
+P +G+LL+GPPGTGKT +AR A+++G F +NGPE++S+ GESE L + F+ A +
Sbjct: 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEK 295
Query: 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446
+APA++FIDELDAIAP R+ E+ +R+V+ LL LMDG+ + V+V+AATNRP+SI+P
Sbjct: 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355
Query: 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAAL 506
ALRR GR DRE++I +P RLEIL M+ + D ++E ++ THG VGADLAAL
Sbjct: 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL 414
Query: 507 CNEAALVCLRR 517
C+EAAL +R+
Sbjct: 415 CSEAALQAIRK 425
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 613 ALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQ 651
+L + + DF A + PSA+RE ++EVP+V WED+GG+
Sbjct: 444 SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGR 482
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 143/232 (61%), Gaps = 1/232 (0%)
Query: 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMAR 698
+VP ++ VGG + ++ E +E P KH E F+ +G P G++++GPPG KTL+AR
Sbjct: 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLAR 200
Query: 699 AVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE 758
AVA F+ V G EL K++GE + VR LF AR +APSIIF DEID + + R +
Sbjct: 201 AVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEG 260
Query: 759 SDGV-SVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPN 817
S G S R M +LL +LDG N+ +I ATNR D +DPALLRPGR DR + PP+
Sbjct: 261 SGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPS 320
Query: 818 ETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEE 869
R EI RIH RK+ + +N+R++A GC+GAD+ +C EA + A+ E
Sbjct: 321 VAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
Score = 142 bits (359), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 119/211 (56%), Gaps = 8/211 (3%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAP 389
KGV+L+GPPGTGKT LAR AH + V+G E+V + GE + + E+F A + AP
Sbjct: 183 KGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAP 242
Query: 390 AVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446
+++F+DE+D+I R + GG+ QR + LLN +DG + + +I ATNR D ++P
Sbjct: 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDP 302
Query: 447 ALRRPGRLDREIEIAVPSPAQRLEIL--HALLSGMEHSLLDSEVEYLSMATHGFVGADLA 504
AL RPGR+DR+IE PS A R EIL H+ + + + ++ +G GAD+
Sbjct: 303 ALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI---NLRKVAEKMNGCSGADVK 359
Query: 505 ALCNEAALVCLRRYSKIQTSSDVLHSTGTLF 535
+C EA + LR T D + G +
Sbjct: 360 GVCTEAGMYALRERRIHVTQEDFELAVGKVM 390
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 205 bits (521), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 151/248 (60%), Gaps = 4/248 (1%)
Query: 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 701
+V ++DVGG E +L E VE+ K F RIG R P GIL+ GPPG KTL+ARAVA
Sbjct: 12 RVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVA 70
Query: 702 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SD 760
EA + F + G + +VG VR LFA+A+A+AP I+F DEID + RG
Sbjct: 71 GEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG 130
Query: 761 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETD 820
G ++ ++QLLVE+DG + + V+AATNRPD +DPALLRPGRFD+ + V PP+
Sbjct: 131 GHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190
Query: 821 REEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQH 880
R++I IH R P + DVN+ +A + G GAD+ + EAA+ A E D +ITM+
Sbjct: 191 RKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRD--KITMKD 248
Query: 881 LKTAIRHV 888
+ AI V
Sbjct: 249 FEEAIDRV 256
Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 113/193 (58%), Gaps = 4/193 (2%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
R KG+LL GPPGTGKT LAR A ++ V F ++G + V G + ++F A
Sbjct: 47 RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKA 106
Query: 387 SAPAVVFIDELDAIAPARK---DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443
AP +VFIDE+DA+ R GG + ++ + LL MDG +G++V+AATNRPD
Sbjct: 107 HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI 166
Query: 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 503
++PAL RPGR D++I + P R +IL + + + D +E ++ T GFVGADL
Sbjct: 167 LDPALLRPGRFDKKIVVDPPDMLGRKKILE-IHTRNKPLAEDVNLEIIAKRTPGFVGADL 225
Query: 504 AALCNEAALVCLR 516
L NEAAL+ R
Sbjct: 226 ENLVNEAALLAAR 238
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 202 bits (515), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 150/248 (60%), Gaps = 4/248 (1%)
Query: 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 701
+V ++DVGG E +L E VE+ K F RIG R P GIL+ GPPG TL+ARAVA
Sbjct: 12 RVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVA 70
Query: 702 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SD 760
EA + F + G + +VG VR LFA+A+A+AP I+F DEID + RG
Sbjct: 71 GEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG 130
Query: 761 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETD 820
G ++ ++QLLVE+DG + + V+AATNRPD +DPALLRPGRFD+ + V PP+
Sbjct: 131 GHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLG 190
Query: 821 REEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQH 880
R++I IH R P + DVN+ +A + G GAD+ + EAA+ A E D +ITM+
Sbjct: 191 RKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRD--KITMKD 248
Query: 881 LKTAIRHV 888
+ AI V
Sbjct: 249 FEEAIDRV 256
Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 112/193 (58%), Gaps = 4/193 (2%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
R KG+LL GPPGTG T LAR A ++ V F ++G + V G + ++F A
Sbjct: 47 RMPKGILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKA 106
Query: 387 SAPAVVFIDELDAIAPARK---DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443
AP +VFIDE+DA+ R GG + ++ + LL MDG +G++V+AATNRPD
Sbjct: 107 HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDI 166
Query: 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 503
++PAL RPGR D++I + P R +IL + + + D +E ++ T GFVGADL
Sbjct: 167 LDPALLRPGRFDKKIVVDPPDMLGRKKILE-IHTRNKPLAEDVNLEIIAKRTPGFVGADL 225
Query: 504 AALCNEAALVCLR 516
L NEAAL+ R
Sbjct: 226 ENLVNEAALLAAR 238
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/304 (35%), Positives = 167/304 (54%), Gaps = 13/304 (4%)
Query: 609 EKGCALKLELVDFEKARMKVR---PSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWP 665
+KG + L++ R+ R P E ++ ++ +GG E +L E +E P
Sbjct: 141 KKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELP 200
Query: 666 QKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESE 725
K+ E F+R+G +PP G+L++GPPG KTL+A+AVA+ G NF+ + K++GES
Sbjct: 201 LKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESA 260
Query: 726 KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVS---DRVMSQLLVELDGLHQR 782
+ +R +FA A+ + P IIF DE+D + R S+G S R + +LL ++DG
Sbjct: 261 RIIREMFAYAKEHEPCIIFMDEVDAIGGRRF--SEGTSADREIQRTLMELLTQMDGFDNL 318
Query: 783 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRE 842
+I ATNRPD +DPALLRPGR DR + + PNE R EIF+IH K+ + + +
Sbjct: 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEA 378
Query: 843 LACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAK 902
+S+G GADI EA AI ++ D I L A+R V +E+ E + +
Sbjct: 379 AVKMSDGFNGADIRNCATEAGFFAIRDDRD--HINPDDLMKAVRKV--AEVKKL-EGTIE 433
Query: 903 FQRL 906
+Q+L
Sbjct: 434 YQKL 437
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 107/193 (55%), Gaps = 4/193 (2%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
+P KGVLL+GPPGTGKT LA+ A G N +V + GES + + E+F A +
Sbjct: 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKE 272
Query: 387 SAPAVVFIDELDAIAPARKDGGEELS---QRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443
P ++F+DE+DAI R G QR + LL MDG +I ATNRPD+
Sbjct: 273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332
Query: 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 503
++PAL RPGRLDR++EI +P+ A RLEI + ++ + + + E + GF GAD+
Sbjct: 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADI 391
Query: 504 AALCNEAALVCLR 516
EA +R
Sbjct: 392 RNCATEAGFFAIR 404
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 190 bits (482), Expect = 4e-48, Method: Composition-based stats.
Identities = 102/250 (40%), Positives = 153/250 (61%), Gaps = 6/250 (2%)
Query: 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMAR 698
E P V+++D+ G E K +++E V++ K+ E + +G + P G+L+ GPPG KTL+A+
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62
Query: 699 AVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR--G 756
AVA EA + F ++ G +VG VR LF A+ APSIIF DEID + R G
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 757 KESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGP 815
G ++ ++QLL E+DG + V V+AATNRP+ +DPAL+RPGRFDR + V
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 816 PNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875
P+ R EI ++H++ + ++DVN++E+A L+ G GAD++ I EAA+ A N
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN--QKE 240
Query: 876 ITMQHLKTAI 885
+ QHLK A+
Sbjct: 241 VRQQHLKEAV 250
Score = 134 bits (337), Expect = 3e-31, Method: Composition-based stats.
Identities = 77/196 (39%), Positives = 118/196 (60%), Gaps = 6/196 (3%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAP 389
KGVLL GPPGTGKT LA+ A ++ V F++ G + G + ++F++A + AP
Sbjct: 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAP 104
Query: 390 AVVFIDELDAIAPARKDG----GEELSQRMVATLLNLMDGVCRTDG-VLVIAATNRPDSI 444
+++FIDE+DAI +R G G + ++ + LL MDG + V+V+AATNRP+ +
Sbjct: 105 SIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEIL 164
Query: 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLA 504
+PAL RPGR DR++ + P R+EIL + G++ + D ++ ++ T G GADLA
Sbjct: 165 DPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLA 223
Query: 505 ALCNEAALVCLRRYSK 520
+ NEAAL+ R K
Sbjct: 224 NIINEAALLAGRNNQK 239
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 185 bits (469), Expect = 1e-46, Method: Composition-based stats.
Identities = 94/230 (40%), Positives = 141/230 (61%), Gaps = 2/230 (0%)
Query: 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVA 701
K + DV G E K ++ E VE+ + F+++G + P G+LM GPPG KTL+A+A+A
Sbjct: 8 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIA 66
Query: 702 SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SD 760
EA + F + G + +VG VR +F +A+ AP IIF DEID + RG
Sbjct: 67 GEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG 126
Query: 761 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETD 820
G ++ ++Q+LVE+DG + VIAATNRPD +DPALLRPGRFDR + VG P+
Sbjct: 127 GHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 186
Query: 821 REEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 870
RE+I ++H+R++P + D++ +A + G +GAD++ + EAA+ A N
Sbjct: 187 REQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 236
Score = 142 bits (358), Expect = 1e-33, Method: Composition-based stats.
Identities = 81/219 (36%), Positives = 125/219 (57%), Gaps = 14/219 (6%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAP 389
KGVL+ GPPGTGKT LA+ A ++ V FT++G + V G + ++F+ A ++AP
Sbjct: 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAP 105
Query: 390 AVVFIDELDAIAPARK---DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446
++FIDE+DA+ R GG + ++ + +L MDG +G++VIAATNRPD ++P
Sbjct: 106 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 165
Query: 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAAL 506
AL RPGR DR++ + +P R +IL + + + D + ++ T GF GADLA L
Sbjct: 166 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANL 224
Query: 507 CNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTML 545
NEAAL R ++ ++ EFE D ++
Sbjct: 225 VNEAALFAARGNKRVV----------SMVEFEKAKDKIM 253
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/276 (38%), Positives = 148/276 (53%), Gaps = 7/276 (2%)
Query: 627 KVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMF 686
++ PS + E P V + DVGG ++ +L E VE P E F +G PP GIL++
Sbjct: 190 RIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLY 249
Query: 687 GPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFD 746
GPPG KTL ARAVA+ F+ V G EL K+VGE + VR LF AR IIFFD
Sbjct: 250 GPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFD 309
Query: 747 EIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPG 805
EID + R + + G + R M +L+ +LDG R N+ V+ ATNRP+ +DPALLRPG
Sbjct: 310 EIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPG 369
Query: 806 RFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAIS 865
R DR + P+ R IFRIH + + + ++ L TGA++ +C EA +
Sbjct: 370 RIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMF 429
Query: 866 AIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSA 901
AI + T + A+ V I YK+ S+
Sbjct: 430 AIRARRKVA--TEKDFLKAVDKV----ISGYKKFSS 459
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 115/208 (55%), Gaps = 8/208 (3%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 387
P KG+LL+GPPGTGKT AR A+ + V G E+V + GE + + E+F+ A
Sbjct: 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK 301
Query: 388 APAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444
++F DE+DA+ AR D GG+ QR + L+ +DG + V+ ATNRP+++
Sbjct: 302 KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361
Query: 445 EPALRRPGRLDREIEIAVPSPAQRLEI--LHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502
+PAL RPGR+DR++E ++P R I +H+ +E + E +S GA+
Sbjct: 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI---RWELISRLCPNSTGAE 418
Query: 503 LAALCNEAALVCLRRYSKIQTSSDVLHS 530
L ++C EA + +R K+ T D L +
Sbjct: 419 LRSVCTEAGMFAIRARRKVATEKDFLKA 446
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/255 (36%), Positives = 145/255 (56%), Gaps = 3/255 (1%)
Query: 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAV 700
P + D+GG ++ E+VE P H E ++ +G +PP G++++G PG KTL+A+AV
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 701 ASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR-GKES 759
A++ FL + G EL K++G+ + R +F A NAPSI+F DEID + R S
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS 296
Query: 760 DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNET 819
G R M +LL +LDG R +V VI ATN+ + +DPAL+RPGR DR + P+ +
Sbjct: 297 GGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356
Query: 820 DREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ 879
+++I IH K+ S DVN+ L + +GADI +C EA + A+ E ++T +
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER--RMQVTAE 414
Query: 880 HLKTAIRHVQPSEIH 894
K A V +++
Sbjct: 415 DFKQAKERVMKNKVE 429
Score = 139 bits (349), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 115/203 (56%), Gaps = 4/203 (1%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
+P KGV+L+G PGTGKT LA+ A+ + + G E++ + G+ + ++F A +
Sbjct: 214 KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGE 273
Query: 387 SAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443
+AP++VFIDE+DAI R D GGE QR + LLN +DG V VI ATN+ ++
Sbjct: 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333
Query: 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 503
++PAL RPGR+DR+I P + + +IL S M S D +E L GAD+
Sbjct: 334 LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADI 392
Query: 504 AALCNEAALVCLRRYSKIQTSSD 526
A+C EA L+ LR T+ D
Sbjct: 393 QAMCTEAGLLALRERRMQVTAED 415
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 182 bits (463), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 132/230 (57%), Gaps = 1/230 (0%)
Query: 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMAR 698
E P + DVGG + +L+EA+ P K + FK +G R P G LM+GPPG KTL+AR
Sbjct: 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLAR 233
Query: 699 AVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR-GK 757
A A++ FL + P+L ++GE K VR FA A+ AP+IIF DE+D + R
Sbjct: 234 ACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDS 293
Query: 758 ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPN 817
E G R M +LL +LDG V V+AATNR D +DPALLR GR DR + P+
Sbjct: 294 EKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPS 353
Query: 818 ETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAI 867
E R +I +IH RK+ D+N +ELA ++ GA + + EA + A+
Sbjct: 354 EDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIAL 403
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 110/195 (56%), Gaps = 8/195 (4%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
R KG L++GPPGTGKT LAR CA + + P++V GE + + + F A +
Sbjct: 213 RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKE 272
Query: 387 SAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443
AP ++FIDELDAI R D G+ QR + LLN +DG D V V+AATNR D
Sbjct: 273 KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332
Query: 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEY--LSMATHGFVGA 501
++PAL R GRLDR+IE +PS R +IL M D ++ + L+ +T F GA
Sbjct: 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT---DDDINWQELARSTDEFNGA 389
Query: 502 DLAALCNEAALVCLR 516
L A+ EA ++ LR
Sbjct: 390 QLKAVTVEAGMIALR 404
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 182 bits (463), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 143/232 (61%), Gaps = 5/232 (2%)
Query: 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVAS 702
V ++DV G E K ++ E V++ K E F ++G + P G L+ GPPGC KTL+A+AVA+
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 703 EAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGV 762
EA + FLA+ G E G VRSLF +ARA AP I++ DEID + R G
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 763 SVS--DRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETD 820
S + ++ ++QLLVE+DG+ +V V+A+TNR D +D AL+RPGR DR +++ P +
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181
Query: 821 REEIFRIHLR--KIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 870
R EIF HL+ K+ SS + LA L+ G +GADI+ IC EAA+ A E
Sbjct: 182 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG 233
Score = 123 bits (308), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 106/194 (54%), Gaps = 9/194 (4%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAP 389
KG LL GPPG GKT LA+ A ++ V + G E V G + +F A AP
Sbjct: 40 KGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAP 99
Query: 390 AVVFIDELDAIAPARKDGGEELS----QRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 445
+V+IDE+DA+ R S ++ + LL MDG+ TD V+V+A+TNR D ++
Sbjct: 100 CIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159
Query: 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEY---LSMATHGFVGAD 502
AL RPGRLDR + I +P+ +R EI L ++ L S Y L+ T GF GAD
Sbjct: 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK--LTQSSTFYSQRLAELTPGFSGAD 217
Query: 503 LAALCNEAALVCLR 516
+A +CNEAAL R
Sbjct: 218 IANICNEAALHAAR 231
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 179 bits (454), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 140/239 (58%), Gaps = 12/239 (5%)
Query: 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMAR 698
E P V + DVGG K ++ EAVE P + +++IG PP G+L++GPPG KT++ +
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224
Query: 699 AVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE 758
AVA+ F+ V G E K++GE + VR +F AR NAPSIIF DE+D +A K
Sbjct: 225 AVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT---KR 281
Query: 759 SDGVSVSDRVMSQLLVEL----DGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVG 814
D + SDR + ++L+EL DG Q NV VI ATNR D +DPALLRPGR DR +
Sbjct: 282 FDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEF- 340
Query: 815 PPNETDREE---IFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 870
P+ DR E IF K+ + + ++ L ++ +GA I+ I +EA + A+ +N
Sbjct: 341 -PSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 398
Score = 139 bits (350), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 9/221 (4%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 387
P +GVLL+GPPGTGKT L + A+ + VNG E V + GE + + +VF A ++
Sbjct: 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN 264
Query: 388 APAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444
AP+++FIDE+D+IA R D G + QR++ LL MDG ++ V VI ATNR D++
Sbjct: 265 APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324
Query: 445 EPALRRPGRLDREIEIAVPSPAQRLE---ILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501
+PAL RPGRLDR+IE PS R E I + S M + +++++ L + GA
Sbjct: 325 DPALLRPGRLDRKIEF--PSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGA 381
Query: 502 DLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSD 542
+AA+ EA L +R+ + SD+ + T + + D
Sbjct: 382 VIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVD 422
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 178 bits (452), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 102/245 (41%), Positives = 151/245 (61%), Gaps = 11/245 (4%)
Query: 627 KVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT-GILM 685
K+R + ++ E P VKWEDV G K L EAV P K FK G R PT GIL+
Sbjct: 17 KLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILL 74
Query: 686 FGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFF 745
+GPPG K+ +A+AVA+EA F +V +L SKW+GESEK V+ LFA AR N PSIIF
Sbjct: 75 YGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFI 134
Query: 746 DEIDGLAAIRGK-ESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLR 803
D++D L RG+ ES+ S R+ ++LLV+++G+ + V V+ ATN P ++D A+ R
Sbjct: 135 DQVDALTGTRGEGESE---ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR 191
Query: 804 PGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREA 862
RF+R +Y+ P+ R +F I++ PC + + R L ++EG +G+DI+++ ++A
Sbjct: 192 --RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDA 249
Query: 863 AISAI 867
+ I
Sbjct: 250 LMQPI 254
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 119/200 (59%), Gaps = 6/200 (3%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
+PT G+LL+GPPGTGK+ LA+ A ++ F+V+ ++VS+ GESE+ + ++F A +
Sbjct: 67 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 126
Query: 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIE 445
+ P+++FID++DA+ R +G E S+R+ LL M+GV + GVLV+ ATN P ++
Sbjct: 127 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 186
Query: 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAA 505
A+RR R +R I I +P A R + + L + L T G+ G+D+A
Sbjct: 187 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV 244
Query: 506 LCNEAALVCLRRYSKIQTSS 525
+ +A + +R KIQ+++
Sbjct: 245 VVKDALMQPIR---KIQSAT 261
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 147/238 (61%), Gaps = 11/238 (4%)
Query: 634 REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT-GILMFGPPGCS 692
R + E P VKWEDV G K L EAV P K FK G R PT GIL++GPPG
Sbjct: 15 RGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTG 72
Query: 693 KTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLA 752
K+ +A+AVA+EA F +V +L SKW+GESEK V+ LFA AR N PSIIF DE+D L
Sbjct: 73 KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALT 132
Query: 753 AIRGK-ESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLRPGRFDRL 810
RG+ ES+ S R+ ++LLV+++G+ + V V+ ATN P ++D A+ R RF+R
Sbjct: 133 GTRGEGESE---ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERR 187
Query: 811 LYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAI 867
+Y+ P+ R +F I++ PC + + R L ++EG +G+DI+++ ++A + I
Sbjct: 188 IYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI 245
Score = 129 bits (325), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 119/200 (59%), Gaps = 6/200 (3%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
+PT G+LL+GPPGTGK+ LA+ A ++ F+V+ ++VS+ GESE+ + ++F A +
Sbjct: 58 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 117
Query: 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIE 445
+ P+++FIDE+DA+ R +G E S+R+ LL M+GV + GVLV+ ATN P ++
Sbjct: 118 NKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 177
Query: 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAA 505
A+RR R +R I I +P A R + + L + L T G+ G+D+A
Sbjct: 178 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV 235
Query: 506 LCNEAALVCLRRYSKIQTSS 525
+ +A + +R KIQ+++
Sbjct: 236 VVKDALMQPIR---KIQSAT 252
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 147/236 (62%), Gaps = 11/236 (4%)
Query: 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT-GILMFGPPGCSKT 694
++ E P VKWEDV G K L EAV P K FK G R PT GIL++GPPG K+
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILLYGPPGTGKS 65
Query: 695 LMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754
+A+AVA+EA F +V +L SKW+GESEK V+ LFA AR N PSIIF D++D L
Sbjct: 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125
Query: 755 RGK-ESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLY 812
RG+ ES+ S R+ ++LLV+++G+ + V V+ ATN P ++D A+ R RF+R +Y
Sbjct: 126 RGEGESEA---SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIY 180
Query: 813 VGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAI 867
+ P+ R +F I++ PC + + R L ++EG +G+DI+++ ++A + I
Sbjct: 181 IPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPI 236
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 119/200 (59%), Gaps = 6/200 (3%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
+PT G+LL+GPPGTGK+ LA+ A ++ F+V+ ++VS+ GESE+ + ++F A +
Sbjct: 49 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 108
Query: 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIE 445
+ P+++FID++DA+ R +G E S+R+ LL M+GV + GVLV+ ATN P ++
Sbjct: 109 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 168
Query: 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAA 505
A+RR R +R I I +P A R + + L + L T G+ G+D+A
Sbjct: 169 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV 226
Query: 506 LCNEAALVCLRRYSKIQTSS 525
+ +A + +R KIQ+++
Sbjct: 227 VVKDALMQPIR---KIQSAT 243
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 176 bits (447), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 150/254 (59%), Gaps = 4/254 (1%)
Query: 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTL 695
V+ E PKV ++DV G E K +L E VE+ K+ F +G R P G+L+ GPPG KT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 696 MARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 755
+ARAVA EA + F+ G + +VG VR LF A+ +AP I+F DEID + R
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 756 GKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVG 814
G G ++ ++QLLVE+DG + + V+AATNRPD +DPALLRPGRFDR + +
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 815 PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 874
P+ RE+I RIH R P + DV++ LA + G GAD+ + EAA+ A E
Sbjct: 209 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RR 266
Query: 875 RITMQHLKTAIRHV 888
+ITM+ L+ A V
Sbjct: 267 KITMKDLEEAADRV 280
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 103/179 (57%), Gaps = 4/179 (2%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
R KGVLL GPPG GKT LAR A ++ V T +G + V G + ++F++A +
Sbjct: 71 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR 130
Query: 387 SAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443
AP +VFIDE+DA+ R GG + ++ + LL MDG + ++V+AATNRPD
Sbjct: 131 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190
Query: 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502
++PAL RPGR DR+I I P R +IL G + D ++ L+ T GFVGAD
Sbjct: 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 176 bits (446), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/254 (42%), Positives = 150/254 (59%), Gaps = 4/254 (1%)
Query: 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTL 695
V+ E PKV ++DV G E K +L E VE+ K+ F +G R P G+L+ GPPG KT
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 79
Query: 696 MARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 755
+ARAVA EA + F+ G + +VG VR LF A+ +AP I+F DEID + R
Sbjct: 80 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 139
Query: 756 GKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVG 814
G G ++ ++QLLVE+DG + + V+AATNRPD +DPALLRPGRFDR + +
Sbjct: 140 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 199
Query: 815 PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 874
P+ RE+I RIH R P + DV++ LA + G GAD+ + EAA+ A E
Sbjct: 200 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RR 257
Query: 875 RITMQHLKTAIRHV 888
+ITM+ L+ A V
Sbjct: 258 KITMKDLEEAADRV 271
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 103/179 (57%), Gaps = 4/179 (2%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
R KGVLL GPPG GKT LAR A ++ V T +G + V G + ++F++A +
Sbjct: 62 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR 121
Query: 387 SAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443
AP +VFIDE+DA+ R GG + ++ + LL MDG + ++V+AATNRPD
Sbjct: 122 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 181
Query: 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502
++PAL RPGR DR+I I P R +IL G + D ++ L+ T GFVGAD
Sbjct: 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGAD 239
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 176 bits (445), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 150/245 (61%), Gaps = 11/245 (4%)
Query: 627 KVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT-GILM 685
K+R + ++ E P VKWEDV G K L EAV P K FK G R PT GIL+
Sbjct: 32 KLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFK--GNRKPTSGILL 89
Query: 686 FGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFF 745
+GPPG K+ +A+AVA+EA F +V +L SKW+GESEK V+ LFA AR N PSIIF
Sbjct: 90 YGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFI 149
Query: 746 DEIDGLAAIRGK-ESDGVSVSDRVMSQLLVELDGL-HQRVNVTVIAATNRPDKIDPALLR 803
D++D L RG+ ES+ S R+ ++LLV+++G+ + V V+ ATN P ++D A+ R
Sbjct: 150 DQVDALTGTRGEGESE---ASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR 206
Query: 804 PGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREA 862
RF+R +Y+ P+ R +F I++ P + + R L ++EG +G+DI+++ ++A
Sbjct: 207 --RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDA 264
Query: 863 AISAI 867
+ I
Sbjct: 265 LMQPI 269
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 119/200 (59%), Gaps = 6/200 (3%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
+PT G+LL+GPPGTGK+ LA+ A ++ F+V+ ++VS+ GESE+ + ++F A +
Sbjct: 82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 141
Query: 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIE 445
+ P+++FID++DA+ R +G E S+R+ LL M+GV + GVLV+ ATN P ++
Sbjct: 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 201
Query: 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAA 505
A+RR R +R I I +P A R + + L + L T G+ G+D+A
Sbjct: 202 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV 259
Query: 506 LCNEAALVCLRRYSKIQTSS 525
+ +A + +R KIQ+++
Sbjct: 260 VVKDALMQPIR---KIQSAT 276
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 176 bits (445), Expect = 8e-44, Method: Composition-based stats.
Identities = 108/250 (43%), Positives = 149/250 (59%), Gaps = 4/250 (1%)
Query: 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTL 695
V+ E PKV ++DV G E K +L E VE+ K+ F +G R P G+L+ GPPG KT
Sbjct: 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 64
Query: 696 MARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 755
+ARAVA EA + F+ G + +VG VR LF A+ +AP I+F DEID + R
Sbjct: 65 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 124
Query: 756 GKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVG 814
G G ++ ++QLLVE+DG + + V+AATNRPD +DPALLRPGRFDR + +
Sbjct: 125 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 184
Query: 815 PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 874
P+ RE+I RIH R P + DV++ LA + G GAD+ + EAA+ A E
Sbjct: 185 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RR 242
Query: 875 RITMQHLKTA 884
+ITM+ L+ A
Sbjct: 243 KITMKDLEEA 252
Score = 127 bits (318), Expect = 4e-29, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 103/179 (57%), Gaps = 4/179 (2%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
R KGVLL GPPG GKT LAR A ++ V T +G + V G + ++F++A +
Sbjct: 47 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR 106
Query: 387 SAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443
AP +VFIDE+DA+ R GG + ++ + LL MDG + ++V+AATNRPD
Sbjct: 107 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166
Query: 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502
++PAL RPGR DR+I I P R +IL G + D ++ L+ T GFVGAD
Sbjct: 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGAD 224
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 175 bits (443), Expect = 1e-43, Method: Composition-based stats.
Identities = 108/250 (43%), Positives = 149/250 (59%), Gaps = 4/250 (1%)
Query: 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTL 695
V+ E PKV ++DV G E K +L E VE+ K+ F +G R P G+L+ GPPG KT
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 88
Query: 696 MARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 755
+ARAVA EA + F+ G + +VG VR LF A+ +AP I+F DEID + R
Sbjct: 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 148
Query: 756 GKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVG 814
G G ++ ++QLLVE+DG + + V+AATNRPD +DPALLRPGRFDR + +
Sbjct: 149 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
Query: 815 PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 874
P+ RE+I RIH R P + DV++ LA + G GAD+ + EAA+ A E
Sbjct: 209 APDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RR 266
Query: 875 RITMQHLKTA 884
+ITM+ L+ A
Sbjct: 267 KITMKDLEEA 276
Score = 126 bits (317), Expect = 5e-29, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 103/179 (57%), Gaps = 4/179 (2%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
R KGVLL GPPG GKT LAR A ++ V T +G + V G + ++F++A +
Sbjct: 71 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKR 130
Query: 387 SAPAVVFIDELDAIAPARKD---GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443
AP +VFIDE+DA+ R GG + ++ + LL MDG + ++V+AATNRPD
Sbjct: 131 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190
Query: 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502
++PAL RPGR DR+I I P R +IL G + D ++ L+ T GFVGAD
Sbjct: 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGAD 248
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 151/274 (55%), Gaps = 22/274 (8%)
Query: 633 MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR-PPTGILMFGPPGC 691
M E++ P V WED+ G K + E V WP + F G R PP GIL+FGPPG
Sbjct: 71 MNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIF--TGLRGPPKGILLFGPPGT 128
Query: 692 SKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGL 751
KTL+ + +AS++G F ++ L SKWVGE EK VR+LFA AR P++IF DEID L
Sbjct: 129 GKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSL 188
Query: 752 AAIRGKESDGV-SVSDRVMSQLLVELDG--LHQRVNVTVIAATNRPDKIDPALLRPGRFD 808
+ RG DG S R+ ++ LV+LDG + V+ ATNRP +ID A R R
Sbjct: 189 LSQRG---DGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLV 243
Query: 809 RLLYVGPPNETDREEI-FRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAI 867
+ LY+ P + R++I + ++ C S+ I ++ S+ +GAD++ +CREA++ I
Sbjct: 244 KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPI 303
Query: 868 E--ENLDASRITMQHLK--------TAIRHVQPS 891
+ D + IT ++ A R V+PS
Sbjct: 304 RSLQTADIATITPDQVRPIAYIDFENAFRTVRPS 337
Score = 132 bits (333), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 110/191 (57%), Gaps = 4/191 (2%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 387
P KG+LL GPPGTGKT + + A SG F+++ + S+ GE E+ + +F A
Sbjct: 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQ 175
Query: 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT--DGVLVIAATNRPDSIE 445
PAV+FIDE+D++ R DG E S+R+ L +DG + D +LV+ ATNRP I+
Sbjct: 176 QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235
Query: 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAA 505
A RR RL + + I +P + R +I+ L+S + L + E+E + + F GAD+
Sbjct: 236 EAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQ 293
Query: 506 LCNEAALVCLR 516
LC EA+L +R
Sbjct: 294 LCREASLGPIR 304
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 112/290 (38%), Positives = 159/290 (54%), Gaps = 25/290 (8%)
Query: 633 MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT-GILMFGPPGC 691
+ E++ KV+W D+ GQ K L E V P E F G R P G+L+FGPPG
Sbjct: 8 LDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELF--TGLRAPAKGLLLFGPPGN 65
Query: 692 SKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGL 751
KTL+ARAVA+E FL + L SK+VG+ EK VR+LFA AR PSIIF DE+D L
Sbjct: 66 GKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSL 125
Query: 752 AAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN---VTVIAATNRPDKIDPALLRPGRFD 808
+ R S R+ ++ LVE DGL + + V+AATNRP ++D A LR RF
Sbjct: 126 LSERSSSEH--EASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFT 181
Query: 809 RLLYVGPPNETDREEIFRIHLRKIPCSSDVN-IRELACLSEGCTGADISLICREAAISAI 867
+ +YV P+E RE + L+K D +R LA +++G +G+D++ + ++AA+ I
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 241
Query: 868 EE---------NLDASR-ITMQH----LKTAIRHVQPSEIHSYKELSAKF 903
E ++ A R IT Q LK R V P ++SY++ S +
Sbjct: 242 RELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDY 291
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 114/218 (52%), Gaps = 7/218 (3%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 387
P KG+LL GPPG GKT LAR A + ++ + S+ G+ E+ + +F A
Sbjct: 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHM 112
Query: 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT---DGVLVIAATNRPDSI 444
P+++FIDE+D++ R E S+R+ L DG+ D ++V+AATNRP +
Sbjct: 113 QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQEL 172
Query: 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSE-VEYLSMATHGFVGADL 503
+ A R R + + +++P R +L+ LL + S LD+E + L+ T G+ G+DL
Sbjct: 173 DEAALR--RFTKRVYVSLPDEQTRELLLNRLLQ-KQGSPLDTEALRRLAKITDGYSGSDL 229
Query: 504 AALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHS 541
AL +AAL +R + Q + + + E + HS
Sbjct: 230 TALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHS 267
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/236 (39%), Positives = 137/236 (58%), Gaps = 10/236 (4%)
Query: 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPP-TGILMFGPPGCSKT 694
+++E P VKW DV G K L EAV P K F G R P GIL+FGPPG K+
Sbjct: 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKS 181
Query: 695 LMARAVASEAG-LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAA 753
+A+AVA+EA F ++ +L SKW+GESEK V++LF AR N PSIIF DEID L
Sbjct: 182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG 241
Query: 754 IRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRPDKIDPALLRPGRFDRLLY 812
R + + R+ ++ LV++ G+ + V+ ATN P +D A+ R RF++ +Y
Sbjct: 242 SRSENES--EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIY 297
Query: 813 VGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAI 867
+ P R +FR+HL S ++ + +EL ++G +GADIS+I R+A + +
Sbjct: 298 IPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPV 353
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 119/200 (59%), Gaps = 7/200 (3%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSG-VNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
P +G+LL GPPGTGK+ LA+ A ++ F+++ ++VS+ GESE+ + +F A +
Sbjct: 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE 225
Query: 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-CRTDGVLVIAATNRPDSIE 445
+ P+++FIDE+D++ +R + E ++R+ L M GV DG+LV+ ATN P ++
Sbjct: 226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 285
Query: 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAA 505
A+RR R ++ I I +P R + L ++SL +++ + L T G+ GAD++
Sbjct: 286 SAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISI 343
Query: 506 LCNEAALVCLRRYSKIQTSS 525
+ +A + +R K+Q+++
Sbjct: 344 IVRDALMQPVR---KVQSAT 360
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 138/238 (57%), Gaps = 10/238 (4%)
Query: 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPP-TGILMFGPPGCSKT 694
+++E P VKW DV G K L EAV P K F G R P GIL+FGPPG K+
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKS 59
Query: 695 LMARAVASEAG-LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAA 753
+A+AVA+EA F ++ +L SKW+GESEK V++LF AR N PSIIF DEID L
Sbjct: 60 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCG 119
Query: 754 IRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRPDKIDPALLRPGRFDRLLY 812
R + + R+ ++ LV++ G+ + V+ ATN P +D A+ R RF++ +Y
Sbjct: 120 SRSENES--EAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIY 175
Query: 813 VGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 869
+ P R +F++HL S ++ + REL ++G +GADIS+I R+A + + +
Sbjct: 176 IPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 119/200 (59%), Gaps = 7/200 (3%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSG-VNLFTVNGPEVVSQNYGESEQALHEVFDSASQ 386
P +G+LL GPPGTGK+ LA+ A ++ F+++ ++VS+ GESE+ + +F A +
Sbjct: 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE 103
Query: 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-CRTDGVLVIAATNRPDSIE 445
+ P+++FIDE+D++ +R + E ++R+ L M GV DG+LV+ ATN P ++
Sbjct: 104 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 163
Query: 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAA 505
A+RR R ++ I I +P P R + L ++SL +++ L T G+ GAD++
Sbjct: 164 SAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISI 221
Query: 506 LCNEAALVCLRRYSKIQTSS 525
+ +A + +R K+Q+++
Sbjct: 222 IVRDALMQPVR---KVQSAT 238
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 162/308 (52%), Gaps = 26/308 (8%)
Query: 615 KLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKR 674
K +L +F + M E++ VK++D+ GQ K L E V P E F
Sbjct: 84 KKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF-- 141
Query: 675 IGTRPPT-GILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFA 733
G R P G+L+FGPPG KT++A+AVA+E+ F + L SK+VGE EK VR+LFA
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFA 201
Query: 734 KARANAPSIIFFDEIDGLAAIRGK-ESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAA 790
AR PSIIF D++D L R + E D S R+ ++ L+E DG+ + V V+ A
Sbjct: 202 VARELQPSIIFIDQVDSLLCERREGEHD---ASRRLKTEFLIEFDGVQSAGDDRVLVMGA 258
Query: 791 TNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849
TNRP ++D A+LR RF + +YV PNE R + + L K + + +LA +++G
Sbjct: 259 TNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDG 316
Query: 850 CTGADISLICREAAISAIEE-------NLDASRIT-------MQHLKTAIRHVQPSEIHS 895
+G+D++ + ++AA+ I E N+ AS + + LK R V P + +
Sbjct: 317 YSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEA 376
Query: 896 YKELSAKF 903
Y + F
Sbjct: 377 YIRWNKDF 384
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 108/191 (56%), Gaps = 4/191 (2%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 387
P +G+LL GPPG GKT LA+ A +S F ++ + S+ GE E+ + +F A +
Sbjct: 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAREL 206
Query: 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CRTDGVLVIAATNRPDSIE 445
P+++FID++D++ R++G + S+R+ L DGV D VLV+ ATNRP ++
Sbjct: 207 QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266
Query: 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAA 505
A+ R R + + +++P+ RL +L LL L E+ L+ T G+ G+DL A
Sbjct: 267 EAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTA 324
Query: 506 LCNEAALVCLR 516
L +AAL +R
Sbjct: 325 LAKDAALGPIR 335
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 25/181 (13%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY--GESEQALHEVFDSASQS 387
K +L+ GP G GKT +AR A + V + Y E + + ++ DSA +
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGA 110
Query: 388 APAV-----VFIDELDAIAPARKDGGEELSQRMVA-TLLNLMD--------GVCRTDGVL 433
AV VFIDE+D I + G ++S+ V LL L++ G+ +TD +L
Sbjct: 111 IDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHIL 170
Query: 434 VIAA----TNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEIL---HALLSGMEHSLLDS 486
IA+ RP + P L+ GRL +E+ S A IL HA L+ +L+ +
Sbjct: 171 FIASGAFQVARPSDLIPELQ--GRLPIRVELTALSAADFERILTEPHASLTEQYKALMAT 228
Query: 487 E 487
E
Sbjct: 229 E 229
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVG-ESEKAVRSLFAKARA 737
P ILM GP G KT +AR +A A F+ V+ + +VG E + +R L A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGG 109
Query: 738 NAPS-----IIFFDEIDGLAAIRGKESDGVSVS 765
+ I+F DEID + + E G VS
Sbjct: 110 AIDAVEQNGIVFIDEIDKIC--KKGEYSGADVS 140
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 626 MKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILM 685
+ +RP + E I GQ +K +L +E + +E P +L+
Sbjct: 4 LALRPKTLDEYI------------GQERLKQKLRVYLEAAKARKE--------PLEHLLL 43
Query: 686 FGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFF 745
FGPPG KT +A +A E G+N GP + E + ++ A + I+F
Sbjct: 44 FGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEEG-DILFI 96
Query: 746 DEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRV------NVTVIAATNRPDKID- 798
DEI L+ + +E ++ D VM ++ + G R T+I AT RP I
Sbjct: 97 DEIHRLSR-QAEEHLYPAMEDFVMDIVIGQ--GPAARTIRLELPRFTLIGATTRPGLITA 153
Query: 799 PALLRPGRFDRLLYVGP 815
P L R G + L Y P
Sbjct: 154 PLLSRFGIVEHLEYYTP 170
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 387
P + +LL GPPG GKT+LA + AH+ GVNL +GP + + G+ L +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--EKPGDLAAILANSLEEGD-- 92
Query: 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG---VCRT-----DGVLVIAATN 439
++FIDE+ ++ + E L M +++++ G RT +I AT
Sbjct: 93 ---ILFIDEIHRLS---RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 440 RPDSI-EPALRRPG 452
RP I P L R G
Sbjct: 147 RPGLITAPLLSRFG 160
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 37/197 (18%)
Query: 626 MKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILM 685
+ +RP + E I GQ +K +L +E + +E P +L+
Sbjct: 4 LALRPKTLDEYI------------GQERLKQKLRVYLEAAKARKE--------PLEHLLL 43
Query: 686 FGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFF 745
FGPPG KT +A +A E G+N GP + E + ++ A + I+F
Sbjct: 44 FGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEEG-DILFI 96
Query: 746 DEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRV------NVTVIAATNRPDKID- 798
DEI L+ + +E ++ D VM ++ + G R T+I AT RP I
Sbjct: 97 DEIHRLSR-QAEEHLYPAMEDFVMDIVIGQ--GPAARTIRLELPRFTLIGATTRPGLITA 153
Query: 799 PALLRPGRFDRLLYVGP 815
P L R G + L Y P
Sbjct: 154 PLLSRFGIVEHLEYYTP 170
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 387
P + +LL GPPG GKT+LA + AH+ GVNL +GP + + G+ L +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--EKPGDLAAILANSLEEGD-- 92
Query: 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG---VCRT-----DGVLVIAATN 439
++FIDE+ ++ + E L M +++++ G RT +I AT
Sbjct: 93 ---ILFIDEIHRLS---RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 440 RPDSI-EPALRRPG 452
RP I P L R G
Sbjct: 147 RPGLITAPLLSRFG 160
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 815 PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEE 869
PPNE R +I +IH RK + +N+R++A L G +GA++ +C EA A+ E
Sbjct: 2 PPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRE 56
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 19/134 (14%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS 387
P + +LL GPPG GKT+LA + AH+ GVNL +GP + + G+ L +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI--EKPGDLAAILANSLEEGD-- 92
Query: 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG---VCRTDGV-----LVIAATN 439
++FIDE+ ++ + E L M +++++ G RT + +I AT
Sbjct: 93 ---ILFIDEIHRLS---RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT 146
Query: 440 RPDSIE-PALRRPG 452
RP I P L R G
Sbjct: 147 RPGLITAPLLSRFG 160
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAV 700
PK E +G +R +K +L +E + +E + + L+FGPPG KT +A +
Sbjct: 8 PKTLDEYIGQER-LKQKLRVYLEAAKARKEPLEHL--------LLFGPPGLGKTTLAHVI 58
Query: 701 ASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD 760
A E G+N GP + E + ++ A + I+F DEI L+ + +E
Sbjct: 59 AHELGVNLRVTSGPAI------EKPGDLAAILANSLEEG-DILFIDEIHRLSR-QAEEHL 110
Query: 761 GVSVSDRVMSQLLVELDGLHQRV------NVTVIAATNRPDKID-PALLRPGRFDRLLYV 813
++ D VM +V G R T+I AT RP I P L R G + L Y
Sbjct: 111 YPAMEDFVMD--IVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY 168
Query: 814 GP 815
P
Sbjct: 169 TP 170
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 816 PNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEE 869
PNE R +I +IH RK+ + +N+R++A L G +GA++ +C EA + A+ E
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 64
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESE----QALHEVFDS 383
P VLL GPP +GKT+LA A +S + P+ + G SE QA+ ++FD
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 119
Query: 384 ASQSAPAVVFIDELDAI 400
A +S + V +D+++ +
Sbjct: 120 AYKSQLSCVVVDDIERL 136
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESE----QALHEVFDS 383
P VLL GPP +GKT+LA A +S + P+ + G SE QA+ ++FD
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDD 118
Query: 384 ASQSAPAVVFIDELDAI 400
A +S + V +D+++ +
Sbjct: 119 AYKSQLSCVVVDDIERL 135
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 391
VLL GPPG GKT+LA + A + N+ +GP +V Q G+ L S V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL------TSLERGDV 105
Query: 392 VFIDEL 397
+FIDE+
Sbjct: 106 LFIDEI 111
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 628 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 687
+RP ++ E I GQ VK +L A+E + E + L+ G
Sbjct: 19 LRPKSLDEFI------------GQENVKKKLSLALEAAKMRGEVLDHV--------LLAG 58
Query: 688 PPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDE 747
PPG KT +A +ASE N GP L + G+ + SL ++F DE
Sbjct: 59 PPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVLFIDE 110
Query: 748 IDGL 751
I L
Sbjct: 111 IHRL 114
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 391
VLL GPPG GKT+LA + A + N+ +GP +V Q G+ L S V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL------TSLERGDV 105
Query: 392 VFIDEL 397
+FIDE+
Sbjct: 106 LFIDEI 111
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 628 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 687
+RP ++ E I GQ VK +L A+E + E + L+ G
Sbjct: 19 LRPKSLDEFI------------GQENVKKKLSLALEAAKMRGEVLDHV--------LLAG 58
Query: 688 PPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDE 747
PPG KT +A +ASE N GP L + G+ + SL ++F DE
Sbjct: 59 PPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVLFIDE 110
Query: 748 IDGL 751
I L
Sbjct: 111 IHRL 114
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 391
VLL GPPG GKT+LA + A + N+ +GP +V Q G+ L S V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL------TSLERGDV 105
Query: 392 VFIDEL 397
+FIDE+
Sbjct: 106 LFIDEI 111
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 628 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 687
+RP ++ E I GQ VK +L A+E + E + L+ G
Sbjct: 19 LRPKSLDEFI------------GQENVKKKLSLALEAAKMRGEVLDHV--------LLAG 58
Query: 688 PPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDE 747
PPG KT +A +ASE N GP L + G+ + SL ++F DE
Sbjct: 59 PPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVLFIDE 110
Query: 748 IDGL 751
I L
Sbjct: 111 IHRL 114
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 391
VLL GPPG GKT+LA + A + N+ +GP +V Q G+ L S V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL------TSLERGDV 105
Query: 392 VFIDEL 397
+FIDE+
Sbjct: 106 LFIDEI 111
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 628 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 687
+RP ++ E I GQ VK +L A+E + E + L+ G
Sbjct: 19 LRPKSLDEFI------------GQENVKKKLSLALEAAKMRGEVLDHV--------LLAG 58
Query: 688 PPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDE 747
PPG KT +A +ASE N GP L + G+ + SL ++F DE
Sbjct: 59 PPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVLFIDE 110
Query: 748 IDGL 751
I L
Sbjct: 111 IHRL 114
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 391
VLL GPPG GKT+LA + A + N+ +GP +V Q G+ L S V
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL------TSLERGDV 105
Query: 392 VFIDEL 397
+FIDE+
Sbjct: 106 LFIDEI 111
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 628 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 687
+RP ++ E I GQ VK +L A+E + E + L+ G
Sbjct: 19 LRPKSLDEFI------------GQENVKKKLSLALEAAKMRGEVLDHV--------LLAG 58
Query: 688 PPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDE 747
PPG KT +A +ASE N GP L + G+ + SL ++F DE
Sbjct: 59 PPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVLFIDE 110
Query: 748 IDGL 751
I L
Sbjct: 111 IHRL 114
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 32/153 (20%)
Query: 332 VLLHGP-PGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ-------NYGESEQALHEVFDS 383
++LH P PGTGKT++A+ HD ++ VNG + N+ + FD
Sbjct: 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAAS-----FDG 104
Query: 384 ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443
+ V+ IDE D G SQR + + + C ++I A N
Sbjct: 105 RQK----VIVIDEFDR-------SGLAESQRHLRSFMEAYSSNCS----IIITANNIDGI 149
Query: 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALL 476
I+P R R I P+ ++E++ ++
Sbjct: 150 IKPLQSRC----RVITFGQPTDEDKIEMMKQMI 178
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 391
VLL GPPG G+T+LA + A + N+ +GP +V Q G+ L S V
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAIL------TSLERGDV 105
Query: 392 VFIDEL 397
+FIDE+
Sbjct: 106 LFIDEI 111
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 628 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFG 687
+RP ++ E I GQ VK +L A+E + E + L+ G
Sbjct: 19 LRPKSLDEFI------------GQENVKKKLSLALEAAKMRGEVLDHV--------LLAG 58
Query: 688 PPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDE 747
PPG +T +A +ASE N GP L + G+ + SL ++F DE
Sbjct: 59 PPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVLFIDE 110
Query: 748 IDGL 751
I L
Sbjct: 111 IHRL 114
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQNYGESEQALHEVFDSA--- 384
+ VLL GPPGTGKT+LA A + G V G EV S ++E L E F A
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTE-VLXENFRRAIGL 136
Query: 385 --SQSAPAV---VFIDELDAIAPARKDGGEEL 411
+ P + V + +LD +A AR GG+++
Sbjct: 137 RIKEGPPGIIQDVTLHDLD-VANARPQGGQDI 167
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 683 ILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFSKWVGESEKAV----RSLFAKAR 736
+L+ GPPG KT +A A+A E G + F G E++S + ++E R++ + +
Sbjct: 80 VLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXENFRRAIGLRIK 139
Query: 737 ANAPSII 743
P II
Sbjct: 140 EGPPGII 146
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 391
+L GP G GKT+LA + +++ N+ T P + E L + + S+ +
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXI------EKSGDLAAILTNLSEG--DI 109
Query: 392 VFIDELDAIAPA 403
+FIDE+ ++PA
Sbjct: 110 LFIDEIHRLSPA 121
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSAS---- 385
+ +L+GPPG GKT+ A L A + G ++ N +V S+ + + D+ S
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNA--GVKNALDNMSVVGY 135
Query: 386 ----------QSAPAVVFIDELDAIAPARKDGGEELSQ 413
V+ +DE+D ++ + G +L+Q
Sbjct: 136 FKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQ 173
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 664 WPQKHQEAFKRIGTRPPTGI----LMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719
W + +FK G + +G+ +++GPPG KT A VA E G + L ++ SK
Sbjct: 58 WENSKKNSFKHAG-KDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
Query: 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK-------ESDGVSVSDR 767
+ + + A N + +F + + GK E DG+S DR
Sbjct: 117 TL------LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR 165
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAV 391
++L GPPGTGKT+LA + A + ++ ++ V+ E +A+ + + +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA---VTSGVKEIREAIERARQNRNAGRRTI 109
Query: 392 VFIDEL--------DAIAPARKDG 407
+F+DE+ DA P +DG
Sbjct: 110 LFVDEVHRFNKSQQDAFLPHIEDG 133
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 683 ILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAP-- 740
++++GPPG KT +A +A A + + V K +R +AR N
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 741 --SIIFFDEI 748
+I+F DE+
Sbjct: 106 RRTILFVDEV 115
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 37.0 bits (84), Expect = 0.051, Method: Composition-based stats.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 19/167 (11%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCA---HDSGV----NLFTVNGPEVVSQNYGESEQALHEV 380
PT + G PGTGKT++A A H G +L +V ++V Q G + EV
Sbjct: 59 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEV 118
Query: 381 FDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAA-TN 439
A V+FIDE A R D + Q + LL +M+ R D V+++A +
Sbjct: 119 LKRA---MGGVLFIDE--AYYLYRPDNERDYGQEAIEILLQVMEN-NRDDLVVILAGYAD 172
Query: 440 RPDSI---EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSL 483
R ++ P R R+ IE S + EI +L + +
Sbjct: 173 RMENFFQSNPGFR--SRIAHHIEFPDYSDEELFEIAGHMLDDQNYQM 217
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 36.6 bits (83), Expect = 0.071, Method: Composition-based stats.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 19/167 (11%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCA---HDSGV----NLFTVNGPEVVSQNYGESEQALHEV 380
PT + G PGTGKT++A A H G +L +V ++V Q G + EV
Sbjct: 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEV 125
Query: 381 FDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAA-TN 439
A V+FIDE A R D + Q + LL +M+ R D V+++A +
Sbjct: 126 LKRA---MGGVLFIDE--AYYLYRPDNERDYGQEAIEILLQVMEN-NRDDLVVILAGYAD 179
Query: 440 RPDSI---EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSL 483
R ++ P R R+ IE S + EI +L + +
Sbjct: 180 RMENFFQSNPGFR--SRIAHHIEFPDYSDEELFEIAGHMLDDQNYQM 224
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 20/130 (15%)
Query: 374 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVA-TLLNLMD-------- 424
E+ + D+ Q+ +VFIDE+D I + G ++S+ V LL L++
Sbjct: 238 EELKQKAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH 295
Query: 425 GVCRTDGVLVIAA----TNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEIL---HALLS 477
G+ +TD +L IA+ RP + P L+ GRL +E+ S A IL HA L+
Sbjct: 296 GMVKTDHILFIASGAFQVARPSDLIPELQ--GRLPIRVELTALSAADFERILTEPHASLT 353
Query: 478 GMEHSLLDSE 487
+L+ +E
Sbjct: 354 EQYKALMATE 363
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANA 739
P ILM GP G KT +AR +A A F+ V+ + VG K V S+ +A
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDSA 107
Query: 740 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 773
++ EI A R + D +R++ LL
Sbjct: 108 MKLVRQQEI---AKNRARAED--VAEERILDALL 136
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SKWVGESEKAVRSLFAKA---- 735
+ IL+ GP G KTLMA+ +A + L + +VGE + + + +A
Sbjct: 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWN 132
Query: 736 -RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 776
+ I+F DEID ++ + S VS + Q L+++
Sbjct: 133 VQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 174
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY-GES-EQALHEVFDSA----S 385
+LL GP G+GKT +A+ A + + + + Y GE E L + ++
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 386 QSAPAVVFIDELDAIA 401
++ +VFIDE+D I+
Sbjct: 135 KAQKGIVFIDEIDKIS 150
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 683 ILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFSKWVGESE 725
+L+ GPPG KT +A A+A E G + F + G E++S + ++E
Sbjct: 66 VLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE 110
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQNYGESEQALHEVFDSA 384
+ VLL GPPGTGKT+LA A + G V + G EV S ++E L E F A
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTE-VLMENFRRA 119
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 17/157 (10%)
Query: 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKA---- 735
P + ++G G K+ V + G+N + + EL S GE K +R + +A
Sbjct: 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEII 95
Query: 736 RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL--------VELDGLHQR---VN 784
R +F +++D A G + + V + L+ V+L G++ +
Sbjct: 96 RKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENAR 155
Query: 785 VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDR 821
V +I N + L+R GR ++ + P DR
Sbjct: 156 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 190
Score = 33.5 bits (75), Expect = 0.59, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 336 GPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAV 391
G G GK+ L G+N ++ E+ S N GE + + + + A++
Sbjct: 43 GGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCC 102
Query: 392 VFIDELDAIAPARKDGGEELS---QRMVATLLNLMD 424
+FI++LDA A R G + + Q + ATL+N+ D
Sbjct: 103 LFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIAD 137
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 814 GPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 869
G P+ R +F I++ PC + + R L ++EG +G+DI+++ ++A + I +
Sbjct: 1 GSPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 57
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 20/130 (15%)
Query: 374 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVA-TLLNLMD-------- 424
E+ + D+ Q+ +VFIDE+D I + G ++S+ V LL L++
Sbjct: 238 EELKQKAIDAVEQNG--IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH 295
Query: 425 GVCRTDGVLVIAA----TNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEIL---HALLS 477
G +TD +L IA+ RP + P L+ GRL +E+ S A IL HA L+
Sbjct: 296 GXVKTDHILFIASGAFQVARPSDLIPELQ--GRLPIRVELTALSAADFERILTEPHASLT 353
Query: 478 GMEHSLLDSE 487
+L +E
Sbjct: 354 EQYKALXATE 363
>pdb|2FOZ|A Chain A, Human Adp-Ribosylhydrolase 3
pdb|2FP0|A Chain A, Human Adp-Ribosylhydrolase 3
pdb|2FP0|B Chain B, Human Adp-Ribosylhydrolase 3
Length = 347
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 29 YPFFQVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQ---------SQFLTGLVNGSNKPY 79
Y Q ++ RLS+ L++ +G + + FL L+ G +
Sbjct: 148 YSSVQDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGESSSEHFLKQLL-GHMEDL 206
Query: 80 NGEANHFSVCTCQELHLELVPLRSRLKMNGAAFSKMKVSAERSRDQLGNGIDSSPKTP 137
G+A SV +EL +E P SRLK G + V+ E +LGNGI + P
Sbjct: 207 EGDAQ--SVLDARELGMEERPYSSRLKKIGELLDQASVTREEVVSELGNGIAAFESVP 262
>pdb|2G4K|A Chain A, Anomalous Substructure Of Human Adp-Ribosylhydrolase 3
Length = 347
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 29 YPFFQVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQ---------SQFLTGLVNGSNKPY 79
Y Q ++ RLS+ L++ +G + + FL L+ G +
Sbjct: 148 YSSVQDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGESSSEHFLKQLL-GHMEDL 206
Query: 80 NGEANHFSVCTCQELHLELVPLRSRLKMNGAAFSKMKVSAERSRDQLGNGIDSSPKTP 137
G+A SV +EL +E P SRLK G + V+ E +LGNGI + P
Sbjct: 207 EGDAQ--SVLDARELGMEERPYSSRLKKIGELLDQASVTREEVVSELGNGIAAFESVP 262
>pdb|2QTY|A Chain A, Crystal Structure Of Mouse Adp-ribosylhydrolase 3 (marh3)
pdb|2QTY|B Chain B, Crystal Structure Of Mouse Adp-ribosylhydrolase 3 (marh3)
Length = 347
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 29 YPFFQVLKNEVRLSSSLSYTMGCPLSGRTVFVYTIQ---------SQFLTGLVNGSNKPY 79
Y Q ++ RLS+ L++ +G + + FL L+ G +
Sbjct: 148 YSSVQDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGVSSSEHFLEQLL-GHMEEL 206
Query: 80 NGEANHFSVCTCQELHLELVPLRSRLKMNGAAFSKMKVSAERSRDQLGNGIDSSPKTP 137
G+A SV +EL +E P SRLK G + VS E +LGNGI + P
Sbjct: 207 EGDAQ--SVLDAKELGMEERPYSSRLKKVGELLDQDVVSREEVVSELGNGIAAFESVP 262
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 15/79 (18%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQAL----HEVFDSASQS 387
+L GPPGTGKT+ A A D LF N + + E+ + H++ + A ++
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFA-RT 95
Query: 388 AP------AVVFIDELDAI 400
AP ++F+DE DA+
Sbjct: 96 APIGGAPFKIIFLDEADAL 114
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 15/79 (18%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQAL----HEVFDSASQS 387
+L GPPGTGKT+ A A D LF N + + E+ + H++ + A ++
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFA-RT 95
Query: 388 AP------AVVFIDELDAI 400
AP ++F+DE DA+
Sbjct: 96 APIGGAPFKIIFLDEADAL 114
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLF 732
P ILM GP G KT +AR +A A F+ V+ + VG K V S+
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSII 99
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Query: 374 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVA-TLLNLMD-------- 424
E+ + D+ Q +VFIDE+D I + G ++S+ V LL L++
Sbjct: 236 EELKQDAIDAVEQHG--IVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKH 293
Query: 425 GVCRTDGVLVIAA----TNRPDSIEPALRRPGRLDREIEI 460
G+ +TD +L IA+ +P + P L+ GRL +E+
Sbjct: 294 GMVKTDHILFIASGAFQIAKPSDLIPELQ--GRLPIRVEL 331
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLF 732
P ILM GP G KT +AR +A A F+ V+ + VG K V S+
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSII 106
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Query: 374 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVA-TLLNLMD-------- 424
E+ + D+ Q +VFIDE+D I + G ++S+ V LL L++
Sbjct: 243 EELKQDAIDAVEQHG--IVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKH 300
Query: 425 GVCRTDGVLVIAA----TNRPDSIEPALRRPGRLDREIEI 460
G+ +TD +L IA+ +P + P L+ GRL +E+
Sbjct: 301 GMVKTDHILFIASGAFQIAKPSDLIPELQ--GRLPIRVEL 338
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLF 732
P ILM GP G KT +AR +A A F+ V+ + VG K V S+
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSII 100
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Query: 374 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVA-TLLNLMD-------- 424
E+ + D+ Q +VFIDE+D I + G ++S+ V LL L++
Sbjct: 237 EELKQDAIDAVEQHG--IVFIDEIDKICKRGESSGPDVSREGVQRDLLPLVEGCTVSTKH 294
Query: 425 GVCRTDGVLVIAA----TNRPDSIEPALRRPGRLDREIEI 460
G+ +TD +L IA+ +P + P L+ GRL +E+
Sbjct: 295 GMVKTDHILFIASGAFQIAKPSDLIPELQ--GRLPIRVEL 332
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SKWVGES-EKAVRSLFAKARAN 738
+ IL+ GP G KTL+A +A + F L + +VGE E ++ L K +
Sbjct: 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 111
Query: 739 AP----SIIFFDEIDGLAAIRGKESDGVSVSDRV 768
I++ D+ID ++ ++SD S++ V
Sbjct: 112 VQKAQRGIVYIDQIDKIS----RKSDNPSITRDV 141
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 17/109 (15%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY-GESE----QALHEVFDSASQ 386
+LL GP G+GKT LA A V + + Y GE Q L + D Q
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 387 SAP-AVVFIDELDAIA-----PA--RKDGGEELSQRMVATLLNLMDGVC 427
A +V+ID++D I+ P+ R GE + Q LL L++G
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQ----ALLKLIEGTV 158
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SKWVGES-EKAVRSLFAKARAN 738
+ IL+ GP G KTL+A +A + F L + +VGE E ++ L K +
Sbjct: 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 111
Query: 739 AP----SIIFFDEIDGLAAIRGKESDGVSVSDRV 768
I++ D+ID ++ ++SD S++ V
Sbjct: 112 VQKAQRGIVYIDQIDKIS----RKSDNPSITRDV 141
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 17/109 (15%)
Query: 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY-GESE----QALHEVFDSASQ 386
+LL GP G+GKT LA A V + + Y GE Q L + D Q
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 387 SAP-AVVFIDELDAIA-----PA--RKDGGEELSQRMVATLLNLMDGVC 427
A +V+ID++D I+ P+ R GE + Q LL L++G
Sbjct: 114 KAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQ----ALLKLIEGTV 158
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 32.7 bits (73), Expect = 0.98, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 19/155 (12%)
Query: 328 PTKGVLLHGPPGTGKTSLARLCA---HDSGV----NLFTVNGPEVVSQNYGESEQALHEV 380
PT G PGTGKT++A A H G +L +V ++V Q G + EV
Sbjct: 66 PTLHXSFTGNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEV 125
Query: 381 FDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAA-TN 439
A V+FIDE A R D + Q + LL + + R D V+++A +
Sbjct: 126 LKRAXG---GVLFIDE--AYYLYRPDNERDYGQEAIEILLQVXEN-NRDDLVVILAGYAD 179
Query: 440 RPDSI---EPALRRPGRLDREIEIAVPSPAQRLEI 471
R ++ P R R+ IE S + EI
Sbjct: 180 RXENFFQSNPGFR--SRIAHHIEFPDYSDEELFEI 212
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 816 PNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875
P+ R IFRIH + + + ++ L TGA++ +C EA + AI +
Sbjct: 8 PDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVA- 66
Query: 876 ITMQHLKTAIRHVQPSEIHSYKELSA 901
T + A+ V I YK+ S+
Sbjct: 67 -TEKDFLKAVDKV----ISGYKKFSS 87
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 824 IFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEEN 870
IF K+ S +V++ + + +GADI+ IC+E+ + A+ EN
Sbjct: 9 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 55
>pdb|1EL9|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylthio]acetate
pdb|1EL9|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylthio]acetate
pdb|1ELI|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Pyrrole-2- Carboxylate
pdb|1ELI|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Pyrrole-2- Carboxylate
Length = 389
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 650 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLM-ARAVASEAGLNF 708
G+ V L W + +E +I T+ TG+L+FGP G S + A E L
Sbjct: 58 GREYVPLALRSQELWYELEKETHHKIFTK--TGVLVFGPKGESAFVAETXEAAKEHSLTV 115
Query: 709 LAVKGPELFSKWVG 722
++G E+ +W G
Sbjct: 116 DLLEGDEINKRWPG 129
>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
Length = 389
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 650 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLM-ARAVASEAGLNF 708
G+ V L W + +E +I T+ TG+L+FGP G S + A E L
Sbjct: 58 GREYVPLALRSQELWYELEKETHHKIFTK--TGVLVFGPKGESAFVAETMEAAKEHSLTV 115
Query: 709 LAVKGPELFSKWVG 722
++G E+ +W G
Sbjct: 116 DLLEGDEINKRWPG 129
>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
Length = 389
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 650 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLM-ARAVASEAGLNF 708
G+ V L W + +E +I T+ TG+L+FGP G S + A E L
Sbjct: 58 GREYVPLALRSQELWYELEKETHHKIFTK--TGVLVFGPKGESAFVAETMEAAKEHSLTV 115
Query: 709 LAVKGPELFSKWVG 722
++G E+ +W G
Sbjct: 116 DLLEGDEINKRWPG 129
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
Length = 389
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 650 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLM-ARAVASEAGLNF 708
G+ V L W + +E +I T+ TG+L+FGP G S + A E L
Sbjct: 58 GREYVPLALRSQELWYELEKETHHKIFTK--TGVLVFGPKGESAFVAETMEAAKEHSLTV 115
Query: 709 LAVKGPELFSKWVG 722
++G E+ +W G
Sbjct: 116 DLLEGDEINKRWPG 129
>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
Length = 389
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 650 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLM-ARAVASEAGLNF 708
G+ V L W + +E +I T+ TG+L+FGP G S + A E L
Sbjct: 58 GREYVPLALRSQELWYELEKETHHKIFTK--TGVLVFGPKGESAFVAETMEAAKEHSLTV 115
Query: 709 LAVKGPELFSKWVG 722
++G E+ +W G
Sbjct: 116 DLLEGDEINKRWPG 129
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 650 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLM-ARAVASEAGLNF 708
G+ V L W + +E +I T+ TG+L+FGP G S + A E L
Sbjct: 59 GREYVPLALRSQELWYELEKETHHKIFTK--TGVLVFGPKGESAFVAETMEAAKEHSLTV 116
Query: 709 LAVKGPELFSKWVG 722
++G E+ +W G
Sbjct: 117 DLLEGDEINKRWPG 130
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSGVNL-FT-VNGPEVVSQNYGESEQALHEVF 381
+ VL+ G PGTGKT++A A G + FT + G E+ S ++E AL + F
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTE-ALTQAF 123
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 683 ILMFGPPGCSKTLMARAVASEAGLNFLAV 711
IL+ G PG KT + + +AS++GL ++ V
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 683 ILMFGPPGCSKTLMARAVASEAGLNFLAV 711
IL+ G PG KT + + +AS++GL ++ V
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|3R2G|A Chain A, Crystal Structure Of Inosine 5' Monophosphate
Dehydrogenase From Legionella Pneumophila
Length = 361
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 685 MFGPPGCSKTLMARAVA-SEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSII 743
+F GC++ + RA A +AG +F V +K+VG++ K++R L A ++
Sbjct: 91 VFVSVGCTENELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVA 150
Query: 744 FFDEIDGLAA 753
+ D LA+
Sbjct: 151 TYAGADYLAS 160
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 688 PPGCSKTLMARAVASEA-GLNFLAVKGPELF 717
PPG ++ L+ARAVA EA G+ F PE
Sbjct: 147 PPGTTEGLVARAVAEEAGGVKFSVASNPEFL 177
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 330 KGVLLHGPPGTGKTSLARLCAHDSGVNL-FT-VNGPEVVSQNYGESEQALHEVFDSA--- 384
+ VL+ G PGTGKT++A A G + FT + G E+ S ++E AL + F +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTE-ALTQAFRRSIGV 144
Query: 385 --SQSAPAVVF---IDELDAI 400
+ P VV + E+D I
Sbjct: 145 RIKEGPPGVVHTVSLHEIDVI 165
>pdb|1OJL|A Chain A, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|B Chain B, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|C Chain C, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|D Chain D, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|E Chain E, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|F Chain F, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
Length = 304
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 332 VLLHGPPGTGKTSLAR---LCAHDSGVNLFTVNGPEVVSQNYGESEQALHE--VFDSAS- 385
VL+HG GTGK +AR C+ S L T+N ++++ ESE HE F A
Sbjct: 28 VLIHGDSGTGKELVARALHACSARSDRPLVTLNCA-ALNESLLESELFGHEKGAFTGADK 86
Query: 386 -------QSAPAVVFIDELDAIAP 402
++ +F+DE+ I+P
Sbjct: 87 RREGRFVEADGGTLFLDEIGDISP 110
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 327 RPTKGVLLHGPPGTGKTSLARLCAHD----------SGVNLFTVN-GPEVVSQNY-GESE 374
R +L G PG GKT++ A G + ++ G V Y GE E
Sbjct: 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 100
Query: 375 QALHEVF-DSASQSAPAVVFIDELDAIAPARKDGG 408
+ L V D A Q ++FIDEL + A K G
Sbjct: 101 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG 135
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 20/157 (12%)
Query: 333 LLHGPPGTGKTSLA-----RLCAHD-----SGVNLFTVN-GPEVVSQNY-GESEQALHEV 380
LL G G GKT++A R+ D + +++++ G + Y G+ E+ +
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 381 FDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440
Q +++FIDE+ I A G ++ NL+ + + + VI +T
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDA------ANLIKPLLSSGKIRVIGSTTY 324
Query: 441 PD--SIEPALRRPGRLDREIEIAVPSPAQRLEILHAL 475
+ +I R R ++I+I PS + ++I++ L
Sbjct: 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,584,561
Number of Sequences: 62578
Number of extensions: 992738
Number of successful extensions: 2852
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2576
Number of HSP's gapped (non-prelim): 182
length of query: 957
length of database: 14,973,337
effective HSP length: 108
effective length of query: 849
effective length of database: 8,214,913
effective search space: 6974461137
effective search space used: 6974461137
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)