Query 002169
Match_columns 957
No_of_seqs 654 out of 5151
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 18:04:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 5E-109 1E-113 922.4 51.0 681 131-906 85-787 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-95 3E-100 829.2 44.7 502 296-901 184-691 (693)
3 TIGR01243 CDC48 AAA family ATP 100.0 1.5E-79 3.3E-84 755.8 60.6 604 188-905 107-731 (733)
4 KOG0736 Peroxisome assembly fa 100.0 1.4E-76 3E-81 676.7 51.5 603 186-904 303-952 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 3E-64 6.5E-69 570.2 41.4 454 326-871 428-890 (952)
6 COG0464 SpoVK ATPases of the A 100.0 1.3E-60 2.7E-65 565.3 45.0 483 319-899 8-492 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 3.9E-54 8.5E-59 460.5 23.1 252 637-890 142-394 (406)
8 COG1222 RPT1 ATP-dependent 26S 100.0 7.9E-50 1.7E-54 427.5 26.5 261 256-519 113-377 (406)
9 KOG0741 AAA+-type ATPase [Post 100.0 2.4E-46 5.3E-51 413.1 37.5 544 181-826 111-683 (744)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 2.6E-46 5.6E-51 419.3 23.7 297 640-951 184-559 (802)
11 KOG0738 AAA+-type ATPase [Post 100.0 5.4E-46 1.2E-50 399.2 22.9 266 634-903 200-488 (491)
12 KOG0730 AAA+-type ATPase [Post 100.0 3.9E-45 8.5E-50 416.9 23.1 229 289-518 427-656 (693)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 1.8E-41 4E-46 393.8 43.7 382 388-891 81-466 (489)
14 KOG0734 AAA+-type ATPase conta 100.0 8E-44 1.7E-48 393.5 20.1 245 640-889 298-542 (752)
15 KOG0728 26S proteasome regulat 100.0 2.7E-43 5.8E-48 358.2 20.1 254 636-891 137-391 (404)
16 KOG0727 26S proteasome regulat 100.0 4E-43 8.6E-48 357.3 20.0 251 639-891 148-399 (408)
17 KOG0726 26S proteasome regulat 100.0 8.7E-43 1.9E-47 361.2 13.9 249 639-889 178-427 (440)
18 KOG0736 Peroxisome assembly fa 100.0 1.2E-41 2.5E-46 390.6 22.3 235 287-522 663-903 (953)
19 KOG0729 26S proteasome regulat 100.0 4.7E-42 1E-46 351.8 15.6 260 628-889 159-419 (435)
20 KOG0652 26S proteasome regulat 100.0 1.7E-41 3.7E-46 346.8 18.2 251 638-890 163-414 (424)
21 KOG0727 26S proteasome regulat 100.0 2.8E-41 6E-46 343.9 17.9 267 254-523 115-385 (408)
22 KOG0739 AAA+-type ATPase [Post 100.0 9.5E-42 2.1E-46 354.6 14.8 266 633-903 120-435 (439)
23 KOG0731 AAA+-type ATPase conta 100.0 1.2E-40 2.5E-45 391.8 22.5 248 641-891 306-556 (774)
24 KOG0738 AAA+-type ATPase [Post 100.0 5.6E-40 1.2E-44 353.0 21.9 231 287-520 203-438 (491)
25 PTZ00454 26S protease regulato 100.0 4.1E-39 8.9E-44 367.1 25.2 253 637-891 136-389 (398)
26 KOG0728 26S proteasome regulat 100.0 3.1E-39 6.8E-44 328.6 20.8 264 252-518 105-372 (404)
27 COG1223 Predicted ATPase (AAA+ 100.0 1.6E-39 3.4E-44 333.0 18.3 244 639-891 114-358 (368)
28 KOG0734 AAA+-type ATPase conta 100.0 1.5E-39 3.4E-44 359.6 18.7 233 291-524 299-531 (752)
29 KOG0732 AAA+-type ATPase conta 100.0 1.8E-38 4E-43 381.4 24.3 387 291-755 260-669 (1080)
30 COG0465 HflB ATP-dependent Zn 100.0 1.9E-38 4.1E-43 368.2 22.9 247 640-889 144-391 (596)
31 PRK03992 proteasome-activating 100.0 4.4E-38 9.6E-43 360.3 23.7 255 635-891 120-375 (389)
32 KOG0726 26S proteasome regulat 100.0 5.5E-39 1.2E-43 333.1 13.8 230 288-518 177-410 (440)
33 KOG0652 26S proteasome regulat 100.0 1.3E-38 2.8E-43 325.7 14.3 239 289-528 164-406 (424)
34 KOG0739 AAA+-type ATPase [Post 100.0 3E-38 6.6E-43 328.6 17.1 231 288-520 125-356 (439)
35 KOG0735 AAA+-type ATPase [Post 100.0 8.2E-38 1.8E-42 355.6 21.2 230 293-523 664-894 (952)
36 KOG0737 AAA+-type ATPase [Post 100.0 1.3E-37 2.8E-42 336.0 20.7 229 640-872 86-317 (386)
37 PTZ00361 26 proteosome regulat 100.0 2.4E-37 5.1E-42 354.5 22.8 251 638-890 175-426 (438)
38 KOG0729 26S proteasome regulat 100.0 4.3E-38 9.4E-43 322.7 14.2 247 288-535 169-419 (435)
39 KOG0741 AAA+-type ATPase [Post 100.0 3.2E-37 7E-42 341.0 16.5 307 639-951 212-552 (744)
40 COG1223 Predicted ATPase (AAA+ 100.0 5.2E-36 1.1E-40 307.2 23.9 288 185-517 49-338 (368)
41 TIGR01241 FtsH_fam ATP-depende 100.0 1.1E-35 2.3E-40 351.8 25.1 251 637-890 46-297 (495)
42 PTZ00454 26S protease regulato 100.0 3.1E-35 6.7E-40 335.3 26.9 229 289-518 138-370 (398)
43 KOG0731 AAA+-type ATPase conta 100.0 6.9E-36 1.5E-40 351.6 22.0 237 290-526 305-545 (774)
44 TIGR02639 ClpA ATP-dependent C 100.0 2.3E-34 5.1E-39 354.1 33.8 447 292-869 178-714 (731)
45 CHL00206 ycf2 Ycf2; Provisiona 100.0 5.1E-35 1.1E-39 363.3 23.4 263 668-949 1618-1940(2281)
46 TIGR01242 26Sp45 26S proteasom 100.0 1.4E-34 3.1E-39 329.8 23.7 250 637-888 113-363 (364)
47 COG0464 SpoVK ATPases of the A 100.0 5.5E-34 1.2E-38 338.0 25.9 229 290-518 236-466 (494)
48 KOG0651 26S proteasome regulat 100.0 2.1E-35 4.6E-40 310.0 11.9 245 641-889 127-374 (388)
49 PRK11034 clpA ATP-dependent Cl 100.0 5.3E-33 1.1E-37 337.7 33.7 450 293-869 183-718 (758)
50 PTZ00361 26 proteosome regulat 100.0 9.2E-34 2E-38 325.0 25.5 229 289-518 176-408 (438)
51 TIGR03689 pup_AAA proteasome A 100.0 6.6E-34 1.4E-38 330.0 24.6 250 637-887 173-477 (512)
52 PRK03992 proteasome-activating 100.0 1.6E-33 3.6E-38 322.6 26.6 228 289-517 124-355 (389)
53 TIGR01243 CDC48 AAA family ATP 100.0 1.3E-33 2.9E-38 348.4 27.5 299 640-952 172-502 (733)
54 CHL00176 ftsH cell division pr 100.0 9.7E-34 2.1E-38 338.9 24.5 245 641-888 178-423 (638)
55 KOG0737 AAA+-type ATPase [Post 100.0 4.1E-34 9E-39 308.9 18.8 228 291-521 87-318 (386)
56 KOG0740 AAA+-type ATPase [Post 100.0 7.1E-34 1.5E-38 318.2 18.5 267 633-904 140-424 (428)
57 COG0465 HflB ATP-dependent Zn 100.0 8.3E-34 1.8E-38 329.6 18.0 236 291-527 145-383 (596)
58 KOG0732 AAA+-type ATPase conta 100.0 1.5E-33 3.3E-38 339.1 18.5 249 641-891 260-528 (1080)
59 CHL00195 ycf46 Ycf46; Provisio 100.0 2.5E-32 5.5E-37 317.6 25.3 221 292-516 224-446 (489)
60 PRK10733 hflB ATP-dependent me 100.0 5.1E-32 1.1E-36 327.8 25.8 246 642-890 148-394 (644)
61 KOG0651 26S proteasome regulat 100.0 6.9E-33 1.5E-37 291.2 11.5 226 291-517 127-356 (388)
62 TIGR03345 VI_ClpV1 type VI sec 100.0 1E-30 2.2E-35 323.7 32.1 481 292-869 183-833 (852)
63 CHL00095 clpC Clp protease ATP 100.0 1.6E-30 3.5E-35 323.5 32.5 477 292-869 175-784 (821)
64 TIGR01242 26Sp45 26S proteasom 100.0 1.2E-30 2.5E-35 297.7 26.4 228 290-518 116-347 (364)
65 TIGR01241 FtsH_fam ATP-depende 100.0 3.6E-31 7.8E-36 313.2 21.8 229 291-520 50-281 (495)
66 COG0542 clpA ATP-binding subun 100.0 1.4E-30 3.1E-35 309.4 24.8 478 293-868 167-756 (786)
67 TIGR03689 pup_AAA proteasome A 100.0 1.4E-30 3.1E-35 302.2 23.7 190 289-478 175-380 (512)
68 TIGR03346 chaperone_ClpB ATP-d 100.0 3.3E-29 7.1E-34 312.6 34.6 485 292-869 169-828 (852)
69 PRK10865 protein disaggregatio 100.0 4.7E-29 1E-33 309.9 35.4 485 292-869 174-831 (857)
70 CHL00176 ftsH cell division pr 100.0 5.2E-30 1.1E-34 306.9 22.1 230 292-522 179-411 (638)
71 PLN00020 ribulose bisphosphate 100.0 1.1E-29 2.4E-34 277.5 21.8 220 293-517 112-354 (413)
72 PLN00020 ribulose bisphosphate 100.0 5.5E-30 1.2E-34 279.8 19.4 220 642-868 111-353 (413)
73 KOG0740 AAA+-type ATPase [Post 100.0 3.4E-30 7.3E-35 288.7 17.5 227 289-518 146-375 (428)
74 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.2E-29 2.5E-34 316.0 18.2 201 320-526 1621-1869(2281)
75 PRK10733 hflB ATP-dependent me 100.0 1.4E-28 3E-33 298.0 21.6 229 293-522 149-380 (644)
76 TIGR02639 ClpA ATP-dependent C 99.9 3E-23 6.5E-28 255.9 20.1 286 641-952 177-499 (731)
77 COG2256 MGS1 ATPase related to 99.9 3E-22 6.4E-27 219.2 19.0 251 639-934 17-287 (436)
78 PRK11034 clpA ATP-dependent Cl 99.9 2.5E-22 5.4E-27 244.8 17.9 285 642-952 182-503 (758)
79 COG0542 clpA ATP-binding subun 99.9 9.8E-22 2.1E-26 234.3 19.9 285 641-952 165-536 (786)
80 TIGR03345 VI_ClpV1 type VI sec 99.9 5.2E-21 1.1E-25 237.6 22.6 286 640-952 181-611 (852)
81 CHL00095 clpC Clp protease ATP 99.9 3.1E-21 6.8E-26 240.6 19.4 285 641-952 174-554 (821)
82 CHL00181 cbbX CbbX; Provisiona 99.9 8.3E-21 1.8E-25 208.9 19.5 215 645-871 22-259 (287)
83 CHL00181 cbbX CbbX; Provisiona 99.9 1.5E-20 3.2E-25 206.9 21.3 215 297-520 24-260 (287)
84 TIGR02881 spore_V_K stage V sp 99.9 2.5E-20 5.4E-25 203.2 21.9 217 294-520 4-244 (261)
85 KOG0743 AAA+-type ATPase [Post 99.9 6.9E-21 1.5E-25 212.1 16.7 214 635-859 191-413 (457)
86 TIGR02881 spore_V_K stage V sp 99.8 3.2E-20 6.8E-25 202.5 20.6 225 644-881 4-253 (261)
87 TIGR02880 cbbX_cfxQ probable R 99.8 3.5E-20 7.6E-25 204.0 21.0 215 297-520 23-259 (284)
88 TIGR02880 cbbX_cfxQ probable R 99.8 4.1E-20 9E-25 203.4 19.7 213 646-870 22-257 (284)
89 KOG0742 AAA+-type ATPase [Post 99.8 9.9E-20 2.1E-24 197.4 19.0 209 641-860 350-586 (630)
90 TIGR03346 chaperone_ClpB ATP-d 99.8 1.4E-19 3E-24 226.5 22.5 286 640-952 167-610 (852)
91 PF00004 AAA: ATPase family as 99.8 7.8E-20 1.7E-24 177.1 14.2 130 332-462 1-132 (132)
92 PF00004 AAA: ATPase family as 99.8 5.7E-20 1.2E-24 178.0 12.5 130 683-815 1-132 (132)
93 PRK10865 protein disaggregatio 99.8 2.1E-19 4.5E-24 224.1 19.6 170 641-835 173-360 (857)
94 KOG0744 AAA+-type ATPase [Post 99.8 8.2E-20 1.8E-24 193.7 13.1 237 644-886 140-412 (423)
95 KOG2004 Mitochondrial ATP-depe 99.8 9.7E-20 2.1E-24 209.5 13.1 278 646-943 411-739 (906)
96 PF05496 RuvB_N: Holliday junc 99.8 4.5E-19 9.8E-24 183.6 16.0 193 638-862 16-225 (233)
97 KOG2028 ATPase related to the 99.8 5.4E-18 1.2E-22 182.0 17.7 255 640-935 132-418 (554)
98 KOG0744 AAA+-type ATPase [Post 99.8 1.2E-18 2.6E-23 185.0 11.9 182 295-478 141-342 (423)
99 COG2255 RuvB Holliday junction 99.8 1.9E-17 4.1E-22 174.0 19.0 218 640-891 20-254 (332)
100 KOG0743 AAA+-type ATPase [Post 99.8 1.3E-17 2.7E-22 186.3 17.1 200 294-505 199-411 (457)
101 KOG0742 AAA+-type ATPase [Post 99.7 1.7E-17 3.7E-22 180.3 14.3 177 327-508 382-586 (630)
102 TIGR00763 lon ATP-dependent pr 99.7 1.6E-16 3.6E-21 197.3 24.5 202 646-867 320-555 (775)
103 PF05496 RuvB_N: Holliday junc 99.7 5.1E-17 1.1E-21 168.4 16.1 181 291-499 19-215 (233)
104 COG0466 Lon ATP-dependent Lon 99.7 2.1E-17 4.5E-22 192.1 14.6 255 646-942 323-616 (782)
105 PRK00080 ruvB Holliday junctio 99.7 3.8E-16 8.3E-21 176.0 23.3 218 640-891 19-253 (328)
106 PRK13342 recombination factor 99.7 2.6E-16 5.6E-21 182.7 22.0 238 640-925 6-259 (413)
107 TIGR00635 ruvB Holliday juncti 99.7 6.8E-16 1.5E-20 172.2 23.4 212 644-889 2-230 (305)
108 KOG1051 Chaperone HSP104 and r 99.7 2.2E-16 4.9E-21 191.1 20.7 161 296-478 186-365 (898)
109 PRK14962 DNA polymerase III su 99.7 6E-16 1.3E-20 180.8 23.1 233 638-920 6-267 (472)
110 PRK14956 DNA polymerase III su 99.7 2.9E-16 6.2E-21 180.7 20.0 224 639-912 11-263 (484)
111 PRK07003 DNA polymerase III su 99.7 1.2E-15 2.5E-20 181.3 20.4 190 639-865 9-227 (830)
112 PRK13341 recombination factor 99.7 7E-16 1.5E-20 187.8 19.2 246 640-926 22-288 (725)
113 TIGR00763 lon ATP-dependent pr 99.7 1E-15 2.2E-20 190.3 20.7 203 297-516 321-556 (775)
114 PRK12323 DNA polymerase III su 99.7 1.1E-15 2.4E-20 179.5 18.9 189 639-864 9-231 (700)
115 PRK14960 DNA polymerase III su 99.7 3.8E-15 8.3E-20 175.5 22.8 205 639-886 8-241 (702)
116 PRK14949 DNA polymerase III su 99.6 9.1E-15 2E-19 176.9 23.0 188 639-863 9-225 (944)
117 PRK00080 ruvB Holliday junctio 99.6 9E-15 1.9E-19 164.9 20.8 194 292-514 21-230 (328)
118 COG2255 RuvB Holliday junction 99.6 3.2E-15 7E-20 157.4 15.7 180 292-499 22-217 (332)
119 PRK07994 DNA polymerase III su 99.6 1.3E-14 2.8E-19 173.6 22.9 189 639-864 9-226 (647)
120 TIGR02902 spore_lonB ATP-depen 99.6 4E-15 8.6E-20 177.2 18.3 214 639-888 58-332 (531)
121 PRK14958 DNA polymerase III su 99.6 7.9E-15 1.7E-19 173.1 20.3 208 639-889 9-245 (509)
122 PRK14961 DNA polymerase III su 99.6 1.6E-14 3.6E-19 164.8 22.0 206 639-887 9-243 (363)
123 TIGR00635 ruvB Holliday juncti 99.6 1.2E-14 2.6E-19 162.2 20.3 191 294-513 2-208 (305)
124 KOG0989 Replication factor C, 99.6 2E-14 4.3E-19 153.1 20.3 192 638-864 28-236 (346)
125 PRK14964 DNA polymerase III su 99.6 1.7E-14 3.6E-19 168.0 21.3 206 639-887 6-240 (491)
126 PRK10787 DNA-binding ATP-depen 99.6 2.6E-14 5.7E-19 176.2 24.2 262 646-950 322-623 (784)
127 KOG2004 Mitochondrial ATP-depe 99.6 6.8E-15 1.5E-19 170.0 17.5 191 268-478 386-598 (906)
128 PRK06645 DNA polymerase III su 99.6 2.1E-14 4.6E-19 168.5 21.4 212 638-889 13-257 (507)
129 PRK08691 DNA polymerase III su 99.6 2.5E-14 5.4E-19 170.2 20.9 207 638-887 8-243 (709)
130 PRK14963 DNA polymerase III su 99.6 5.4E-14 1.2E-18 165.7 21.5 208 638-889 6-241 (504)
131 PRK05563 DNA polymerase III su 99.6 5.9E-14 1.3E-18 167.9 21.6 205 638-885 8-241 (559)
132 PRK14951 DNA polymerase III su 99.6 6.4E-14 1.4E-18 167.3 21.2 204 639-885 9-246 (618)
133 COG0466 Lon ATP-dependent Lon 99.6 3.9E-14 8.5E-19 165.1 18.7 226 271-516 301-563 (782)
134 PRK04195 replication factor C 99.6 8.4E-14 1.8E-18 164.8 21.7 208 639-885 7-222 (482)
135 PRK14957 DNA polymerase III su 99.6 1.3E-13 2.8E-18 162.7 22.8 206 639-887 9-243 (546)
136 COG2256 MGS1 ATPase related to 99.6 2.5E-14 5.4E-19 157.5 15.5 174 291-501 19-208 (436)
137 PRK14956 DNA polymerase III su 99.6 6.6E-14 1.4E-18 161.3 19.1 186 291-510 13-226 (484)
138 PRK07940 DNA polymerase III su 99.6 4.6E-14 1E-18 161.5 17.7 184 644-857 3-213 (394)
139 PRK14959 DNA polymerase III su 99.6 1.4E-13 3E-18 163.4 22.2 205 638-885 8-241 (624)
140 PLN03025 replication factor C 99.6 1.2E-13 2.5E-18 155.3 20.2 201 639-884 6-219 (319)
141 PRK05342 clpX ATP-dependent pr 99.6 1.1E-13 2.4E-18 159.1 19.9 223 647-871 72-383 (412)
142 PRK07133 DNA polymerase III su 99.6 1.8E-13 3.9E-18 164.5 21.9 204 638-884 10-239 (725)
143 PRK14969 DNA polymerase III su 99.6 1.1E-13 2.3E-18 164.6 19.5 205 639-886 9-242 (527)
144 PRK12323 DNA polymerase III su 99.5 8.2E-14 1.8E-18 164.0 17.2 188 290-511 10-230 (700)
145 PRK14965 DNA polymerase III su 99.5 2E-13 4.3E-18 164.1 20.9 190 639-865 9-227 (576)
146 PRK05896 DNA polymerase III su 99.5 2.3E-13 5E-18 160.7 20.3 203 639-884 9-240 (605)
147 PRK07764 DNA polymerase III su 99.5 2.1E-13 4.5E-18 168.2 20.7 189 638-863 7-226 (824)
148 PRK07003 DNA polymerase III su 99.5 1.8E-13 4E-18 162.8 19.1 188 290-511 10-225 (830)
149 PRK14952 DNA polymerase III su 99.5 3E-13 6.6E-18 161.1 21.0 189 639-864 6-225 (584)
150 PRK10787 DNA-binding ATP-depen 99.5 1.5E-12 3.4E-17 160.7 27.4 203 297-517 323-558 (784)
151 TIGR02397 dnaX_nterm DNA polym 99.5 3.5E-13 7.6E-18 153.5 20.2 205 639-886 7-240 (355)
152 COG3829 RocR Transcriptional r 99.5 1.6E-14 3.4E-19 164.8 8.9 262 640-936 239-556 (560)
153 PRK14960 DNA polymerase III su 99.5 2.6E-13 5.7E-18 160.1 19.2 188 290-511 9-224 (702)
154 PRK06647 DNA polymerase III su 99.5 3.4E-13 7.3E-18 160.9 20.3 205 638-885 8-241 (563)
155 PRK14953 DNA polymerase III su 99.5 5.4E-13 1.2E-17 156.8 21.6 205 639-886 9-242 (486)
156 PRK08451 DNA polymerase III su 99.5 5.2E-13 1.1E-17 156.9 20.8 206 638-886 6-240 (535)
157 COG2812 DnaX DNA polymerase II 99.5 2.4E-13 5.2E-18 157.9 17.5 199 637-866 7-228 (515)
158 PRK12402 replication factor C 99.5 6.5E-13 1.4E-17 150.1 20.7 212 639-889 8-250 (337)
159 TIGR02903 spore_lon_C ATP-depe 99.5 2.2E-12 4.8E-17 156.1 26.2 217 639-889 147-431 (615)
160 PRK14962 DNA polymerase III su 99.5 6.2E-13 1.3E-17 155.6 20.5 174 291-497 9-210 (472)
161 TIGR02928 orc1/cdc6 family rep 99.5 1.2E-12 2.6E-17 149.8 22.4 223 643-889 12-275 (365)
162 PRK04195 replication factor C 99.5 5.4E-13 1.2E-17 158.0 20.0 186 292-509 10-202 (482)
163 TIGR00390 hslU ATP-dependent p 99.5 3.8E-13 8.3E-18 151.6 17.6 241 646-889 12-431 (441)
164 TIGR00382 clpX endopeptidase C 99.5 5E-13 1.1E-17 152.9 18.7 224 646-871 77-389 (413)
165 PRK14955 DNA polymerase III su 99.5 6.3E-13 1.4E-17 153.6 19.8 210 638-885 8-254 (397)
166 PRK06305 DNA polymerase III su 99.5 8.8E-13 1.9E-17 154.1 20.9 204 639-885 10-243 (451)
167 PRK14949 DNA polymerase III su 99.5 7.7E-13 1.7E-17 160.4 20.0 188 290-511 10-225 (944)
168 PRK06645 DNA polymerase III su 99.5 1E-12 2.2E-17 154.5 20.4 189 290-512 15-235 (507)
169 PRK14961 DNA polymerase III su 99.5 8.4E-13 1.8E-17 150.8 19.1 186 291-510 11-224 (363)
170 PRK09111 DNA polymerase III su 99.5 1.5E-12 3.1E-17 156.1 21.9 213 637-886 15-255 (598)
171 PRK05201 hslU ATP-dependent pr 99.5 4.6E-13 9.9E-18 151.1 16.5 240 646-888 15-432 (443)
172 PRK14954 DNA polymerase III su 99.5 1.7E-12 3.6E-17 155.8 22.0 209 639-885 9-254 (620)
173 PRK00149 dnaA chromosomal repl 99.5 4.3E-13 9.3E-18 157.6 16.7 191 680-888 148-349 (450)
174 PHA02544 44 clamp loader, smal 99.5 1.6E-12 3.5E-17 145.8 20.2 158 640-829 15-173 (316)
175 PRK14964 DNA polymerase III su 99.5 1.1E-12 2.3E-17 153.1 19.1 188 291-512 8-223 (491)
176 PRK14958 DNA polymerase III su 99.5 8.4E-13 1.8E-17 156.1 18.4 188 290-511 10-225 (509)
177 TIGR02902 spore_lonB ATP-depen 99.5 5.9E-13 1.3E-17 158.7 17.0 197 291-518 60-316 (531)
178 PRK14948 DNA polymerase III su 99.5 2.2E-12 4.7E-17 155.6 21.9 187 639-862 9-226 (620)
179 PRK14970 DNA polymerase III su 99.5 2.1E-12 4.4E-17 148.1 20.8 212 638-886 9-231 (367)
180 TIGR00362 DnaA chromosomal rep 99.5 8.4E-13 1.8E-17 153.2 17.7 190 680-888 136-337 (405)
181 PRK00411 cdc6 cell division co 99.5 4.3E-12 9.4E-17 146.8 23.5 225 644-891 28-285 (394)
182 PRK07994 DNA polymerase III su 99.5 1.3E-12 2.8E-17 156.5 19.5 186 291-510 11-224 (647)
183 PRK07940 DNA polymerase III su 99.5 1.6E-12 3.5E-17 148.8 18.8 187 294-508 3-216 (394)
184 PLN03025 replication factor C 99.5 1.2E-12 2.6E-17 147.0 17.3 177 291-497 8-192 (319)
185 PRK08691 DNA polymerase III su 99.4 2.7E-12 5.7E-17 153.1 18.8 189 290-512 10-226 (709)
186 KOG0989 Replication factor C, 99.4 1.7E-12 3.7E-17 138.5 15.1 177 291-498 31-223 (346)
187 PRK05342 clpX ATP-dependent pr 99.4 4.6E-12 1E-16 145.8 20.1 219 298-518 73-382 (412)
188 PRK13342 recombination factor 99.4 4E-12 8.7E-17 147.8 18.9 181 292-510 8-200 (413)
189 TIGR02928 orc1/cdc6 family rep 99.4 1.6E-11 3.5E-16 140.5 23.5 202 296-516 15-256 (365)
190 COG2204 AtoC Response regulato 99.4 4.7E-13 1E-17 153.4 10.7 260 643-937 138-454 (464)
191 PRK14971 DNA polymerase III su 99.4 1.7E-11 3.6E-16 148.0 24.3 190 639-865 10-229 (614)
192 PRK05563 DNA polymerase III su 99.4 4.4E-12 9.6E-17 151.9 19.2 188 290-511 10-225 (559)
193 PRK00149 dnaA chromosomal repl 99.4 1.8E-12 3.8E-17 152.4 15.6 172 329-513 148-329 (450)
194 PRK12402 replication factor C 99.4 8E-12 1.7E-16 141.3 20.2 178 292-497 11-218 (337)
195 PTZ00112 origin recognition co 99.4 1.5E-11 3.2E-16 146.9 22.9 182 296-496 755-969 (1164)
196 PRK06893 DNA replication initi 99.4 5.8E-12 1.3E-16 134.8 17.9 181 681-886 40-228 (229)
197 PHA02544 44 clamp loader, smal 99.4 6.6E-12 1.4E-16 140.9 19.1 177 292-497 17-201 (316)
198 TIGR03420 DnaA_homol_Hda DnaA 99.4 5.3E-12 1.2E-16 134.5 17.4 202 643-885 12-225 (226)
199 COG5271 MDN1 AAA ATPase contai 99.4 8.2E-12 1.8E-16 151.9 20.4 135 678-830 1541-1704(4600)
200 PRK14951 DNA polymerase III su 99.4 5E-12 1.1E-16 151.2 18.8 187 291-511 11-230 (618)
201 PRK14950 DNA polymerase III su 99.4 7.1E-12 1.5E-16 151.4 20.2 205 639-886 9-243 (585)
202 PTZ00112 origin recognition co 99.4 2.2E-11 4.8E-16 145.4 23.7 217 645-890 754-1008(1164)
203 PRK00411 cdc6 cell division co 99.4 1.8E-11 3.9E-16 141.6 22.8 202 296-515 30-263 (394)
204 TIGR00362 DnaA chromosomal rep 99.4 2.7E-12 5.8E-17 149.1 15.9 172 329-514 136-318 (405)
205 PRK07764 DNA polymerase III su 99.4 6.6E-12 1.4E-16 155.0 19.8 185 291-509 10-224 (824)
206 TIGR00382 clpX endopeptidase C 99.4 1.1E-11 2.3E-16 142.0 19.5 219 297-517 78-387 (413)
207 PRK14963 DNA polymerase III su 99.4 7.7E-12 1.7E-16 147.6 18.9 185 291-509 9-220 (504)
208 PRK14952 DNA polymerase III su 99.4 1.1E-11 2.4E-16 147.8 20.3 186 291-510 8-223 (584)
209 PRK14957 DNA polymerase III su 99.4 1.1E-11 2.4E-16 146.5 20.1 187 291-511 11-225 (546)
210 PRK00440 rfc replication facto 99.4 1.3E-11 2.8E-16 138.4 19.8 207 640-891 11-229 (319)
211 PRK08903 DnaA regulatory inact 99.4 1.2E-11 2.7E-16 132.0 18.7 200 642-886 14-224 (227)
212 TIGR03420 DnaA_homol_Hda DnaA 99.4 1.1E-11 2.4E-16 132.0 18.3 183 299-516 20-211 (226)
213 PRK05896 DNA polymerase III su 99.4 1E-11 2.2E-16 146.9 19.5 185 291-509 11-223 (605)
214 KOG1969 DNA replication checkp 99.4 1.8E-11 3.9E-16 142.6 20.9 179 679-882 325-531 (877)
215 PRK14088 dnaA chromosomal repl 99.4 6.8E-12 1.5E-16 146.5 16.7 191 680-888 130-332 (440)
216 TIGR02397 dnaX_nterm DNA polym 99.4 1.4E-11 3E-16 140.4 19.0 185 292-510 10-222 (355)
217 PRK08084 DNA replication initi 99.4 2.6E-11 5.6E-16 130.4 19.9 179 681-886 46-234 (235)
218 PRK14959 DNA polymerase III su 99.4 1.2E-11 2.5E-16 147.1 18.7 176 291-499 11-214 (624)
219 PRK14969 DNA polymerase III su 99.4 8.8E-12 1.9E-16 148.3 17.7 187 291-511 11-225 (527)
220 PRK14088 dnaA chromosomal repl 99.4 1.1E-11 2.3E-16 144.8 17.9 169 329-510 130-309 (440)
221 PRK06893 DNA replication initi 99.4 1.1E-11 2.3E-16 132.8 16.4 159 330-508 40-205 (229)
222 PRK05201 hslU ATP-dependent pr 99.4 8E-12 1.7E-16 141.1 15.9 213 297-511 16-403 (443)
223 COG1224 TIP49 DNA helicase TIP 99.4 4.5E-11 9.7E-16 129.5 20.5 130 740-890 292-434 (450)
224 TIGR00390 hslU ATP-dependent p 99.4 1.4E-11 3E-16 139.2 17.0 213 297-511 13-401 (441)
225 PRK14965 DNA polymerase III su 99.4 1.5E-11 3.2E-16 148.1 18.3 186 291-510 11-224 (576)
226 PRK06647 DNA polymerase III su 99.4 2.2E-11 4.8E-16 145.4 19.5 187 290-510 10-224 (563)
227 PRK08084 DNA replication initi 99.3 3.7E-11 7.9E-16 129.2 19.2 159 329-509 45-212 (235)
228 PF00308 Bac_DnaA: Bacterial d 99.3 3.8E-11 8.3E-16 127.5 18.5 167 329-509 34-211 (219)
229 TIGR02640 gas_vesic_GvpN gas v 99.3 1.8E-11 3.9E-16 133.7 16.3 133 680-829 21-198 (262)
230 PRK07133 DNA polymerase III su 99.3 3.2E-11 6.9E-16 145.4 19.6 192 291-510 13-223 (725)
231 PRK06305 DNA polymerase III su 99.3 3.7E-11 8E-16 140.6 19.7 184 291-508 12-224 (451)
232 PRK13341 recombination factor 99.3 2.6E-11 5.6E-16 148.2 18.8 182 292-511 24-222 (725)
233 PRK09111 DNA polymerase III su 99.3 4E-11 8.7E-16 143.8 20.0 194 289-510 17-237 (598)
234 PRK14953 DNA polymerase III su 99.3 4.4E-11 9.6E-16 140.8 19.6 187 291-511 11-225 (486)
235 COG3604 FhlA Transcriptional r 99.3 3.3E-12 7.1E-17 144.1 9.6 194 642-866 219-456 (550)
236 PRK08903 DnaA regulatory inact 99.3 5.7E-11 1.2E-15 127.0 18.8 183 293-514 15-207 (227)
237 PRK12422 chromosomal replicati 99.3 2E-11 4.3E-16 142.3 16.1 193 680-888 141-343 (445)
238 PRK14970 DNA polymerase III su 99.3 6.1E-11 1.3E-15 136.0 19.4 185 291-509 12-212 (367)
239 PRK13407 bchI magnesium chelat 99.3 2.2E-11 4.7E-16 136.4 15.2 214 642-890 4-308 (334)
240 PF05673 DUF815: Protein of un 99.3 5.9E-11 1.3E-15 125.2 17.4 194 638-861 19-244 (249)
241 TIGR02329 propionate_PrpR prop 99.3 1.1E-11 2.3E-16 147.0 13.4 261 643-936 209-526 (526)
242 PRK08451 DNA polymerase III su 99.3 5.6E-11 1.2E-15 140.0 19.1 188 291-512 9-224 (535)
243 PRK14948 DNA polymerase III su 99.3 6.4E-11 1.4E-15 143.0 19.8 183 292-508 12-224 (620)
244 PRK06620 hypothetical protein; 99.3 5.9E-11 1.3E-15 125.5 17.0 164 681-885 45-213 (214)
245 PRK08727 hypothetical protein; 99.3 1.2E-10 2.5E-15 125.2 19.4 147 329-497 41-196 (233)
246 PRK12422 chromosomal replicati 99.3 3.4E-11 7.3E-16 140.4 16.1 167 329-508 141-315 (445)
247 PRK14955 DNA polymerase III su 99.3 7.2E-11 1.6E-15 136.5 18.0 185 291-509 11-231 (397)
248 PRK15424 propionate catabolism 99.3 1.4E-11 3E-16 145.9 12.2 259 643-936 216-533 (538)
249 COG1224 TIP49 DNA helicase TIP 99.3 2.2E-10 4.8E-15 124.2 19.8 118 389-523 292-421 (450)
250 TIGR02640 gas_vesic_GvpN gas v 99.3 8E-11 1.7E-15 128.6 16.8 133 328-476 20-198 (262)
251 PRK08727 hypothetical protein; 99.3 2.3E-10 5E-15 122.8 19.8 179 681-887 42-230 (233)
252 PRK14950 DNA polymerase III su 99.3 1.2E-10 2.7E-15 140.7 19.5 185 291-509 11-224 (585)
253 PRK14086 dnaA chromosomal repl 99.3 6.3E-11 1.4E-15 140.3 16.4 167 330-510 315-492 (617)
254 PRK09112 DNA polymerase III su 99.3 2.1E-10 4.7E-15 129.7 19.9 191 641-863 18-245 (351)
255 PRK14954 DNA polymerase III su 99.3 1.7E-10 3.7E-15 138.6 19.9 174 291-497 11-220 (620)
256 PRK00440 rfc replication facto 99.3 1.8E-10 3.9E-15 129.2 19.0 173 292-498 13-196 (319)
257 PF05673 DUF815: Protein of un 99.3 3E-10 6.5E-15 119.9 19.1 190 292-508 23-243 (249)
258 PRK05642 DNA replication initi 99.2 1.3E-10 2.9E-15 124.8 16.4 159 329-509 45-211 (234)
259 COG1474 CDC6 Cdc6-related prot 99.2 3.7E-10 8E-15 128.3 20.8 218 648-891 19-268 (366)
260 KOG2028 ATPase related to the 99.2 7.9E-11 1.7E-15 127.4 14.4 189 291-516 133-347 (554)
261 PRK05022 anaerobic nitric oxid 99.2 2.3E-11 5E-16 145.0 11.3 263 644-936 185-504 (509)
262 cd00009 AAA The AAA+ (ATPases 99.2 1.1E-10 2.4E-15 113.7 14.0 121 328-461 18-150 (151)
263 cd00009 AAA The AAA+ (ATPases 99.2 1E-10 2.2E-15 113.9 13.7 121 679-814 18-150 (151)
264 COG2812 DnaX DNA polymerase II 99.2 5.1E-11 1.1E-15 138.7 13.4 195 290-512 10-226 (515)
265 TIGR02903 spore_lon_C ATP-depe 99.2 3E-10 6.6E-15 137.6 20.6 192 292-511 150-399 (615)
266 PRK14086 dnaA chromosomal repl 99.2 1.6E-10 3.5E-15 136.9 17.6 191 681-890 315-517 (617)
267 TIGR01650 PD_CobS cobaltochela 99.2 6E-11 1.3E-15 131.1 12.8 138 327-478 62-235 (327)
268 PRK14087 dnaA chromosomal repl 99.2 3.8E-10 8.3E-15 132.0 20.2 192 680-889 141-349 (450)
269 PRK05642 DNA replication initi 99.2 4.4E-10 9.5E-15 120.7 18.8 180 680-886 45-233 (234)
270 COG1123 ATPase components of v 99.2 2.8E-10 6E-15 132.4 18.1 57 729-797 437-493 (539)
271 PRK11388 DNA-binding transcrip 99.2 3E-11 6.5E-16 148.3 10.7 261 642-937 321-628 (638)
272 CHL00081 chlI Mg-protoporyphyr 99.2 2E-10 4.4E-15 128.9 15.9 218 641-891 12-325 (350)
273 PRK07471 DNA polymerase III su 99.2 3.2E-10 7E-15 129.0 17.7 186 641-860 14-240 (365)
274 PHA02244 ATPase-like protein 99.2 4.8E-10 1E-14 125.2 18.5 122 679-818 118-263 (383)
275 TIGR02974 phageshock_pspF psp 99.2 1.6E-10 3.5E-15 130.1 14.6 254 648-936 1-328 (329)
276 TIGR02030 BchI-ChlI magnesium 99.2 3.4E-10 7.4E-15 127.1 17.1 215 644-891 2-312 (337)
277 PRK05564 DNA polymerase III su 99.2 4.1E-10 9E-15 126.3 17.8 169 644-849 2-182 (313)
278 TIGR01650 PD_CobS cobaltochela 99.2 1.4E-10 2.9E-15 128.3 12.8 137 679-831 63-235 (327)
279 PRK14087 dnaA chromosomal repl 99.2 2.9E-10 6.4E-15 133.0 15.9 171 329-514 141-327 (450)
280 PRK11608 pspF phage shock prot 99.2 2.1E-10 4.6E-15 129.2 13.7 259 644-937 4-323 (326)
281 PRK14971 DNA polymerase III su 99.2 9.7E-10 2.1E-14 132.9 19.6 185 291-509 12-225 (614)
282 PRK07399 DNA polymerase III su 99.2 4.6E-10 9.9E-15 125.4 15.5 183 644-860 2-223 (314)
283 PF06068 TIP49: TIP49 C-termin 99.2 1.1E-09 2.3E-14 121.2 17.8 103 389-508 279-393 (398)
284 PRK04132 replication factor C 99.1 8.8E-10 1.9E-14 135.5 18.6 157 682-863 566-736 (846)
285 TIGR01817 nifA Nif-specific re 99.1 3.3E-10 7.2E-15 136.2 14.7 259 641-936 191-526 (534)
286 COG0470 HolB ATPase involved i 99.1 1.2E-09 2.5E-14 122.8 18.0 170 647-861 2-199 (325)
287 COG5271 MDN1 AAA ATPase contai 99.1 6.3E-09 1.4E-13 127.8 24.7 133 328-476 887-1047(4600)
288 PRK06620 hypothetical protein; 99.1 4.6E-10 1E-14 118.8 13.8 144 330-509 45-192 (214)
289 TIGR02442 Cob-chelat-sub cobal 99.1 4.7E-10 1E-14 136.8 15.8 215 644-891 2-307 (633)
290 PRK10820 DNA-binding transcrip 99.1 4.5E-10 9.8E-15 134.1 15.3 261 641-937 199-510 (520)
291 COG1220 HslU ATP-dependent pro 99.1 8.8E-10 1.9E-14 118.8 15.7 176 646-826 15-346 (444)
292 KOG1051 Chaperone HSP104 and r 99.1 7.5E-10 1.6E-14 135.1 17.1 143 677-831 205-365 (898)
293 PF00308 Bac_DnaA: Bacterial d 99.1 8E-10 1.7E-14 117.5 15.2 170 681-866 35-216 (219)
294 TIGR00678 holB DNA polymerase 99.1 6.2E-10 1.3E-14 115.5 13.9 144 678-849 12-183 (188)
295 KOG0991 Replication factor C, 99.1 7.2E-10 1.6E-14 113.9 13.7 184 640-862 21-215 (333)
296 PRK09087 hypothetical protein; 99.1 1.8E-09 3.9E-14 115.2 17.2 172 681-888 45-222 (226)
297 COG1474 CDC6 Cdc6-related prot 99.1 2.9E-09 6.3E-14 121.1 19.8 207 297-523 18-254 (366)
298 COG0488 Uup ATPase components 99.1 5.8E-10 1.3E-14 131.8 14.3 110 676-801 344-503 (530)
299 PRK13531 regulatory ATPase Rav 99.1 1.6E-09 3.5E-14 125.0 17.4 222 646-903 20-298 (498)
300 TIGR00764 lon_rel lon-related 99.1 2.2E-09 4.8E-14 129.8 19.3 55 638-707 10-64 (608)
301 COG1221 PspF Transcriptional r 99.1 3.8E-10 8.3E-15 127.6 11.3 197 641-870 73-313 (403)
302 PRK09087 hypothetical protein; 99.1 1.8E-09 4E-14 115.2 15.7 139 329-497 44-187 (226)
303 COG1219 ClpX ATP-dependent pro 99.1 2.6E-09 5.7E-14 114.5 16.1 128 646-779 61-203 (408)
304 KOG1969 DNA replication checkp 99.1 2.8E-09 6E-14 124.8 17.7 167 326-515 323-516 (877)
305 PRK13407 bchI magnesium chelat 99.1 1.2E-09 2.6E-14 122.4 14.4 159 292-476 4-216 (334)
306 PRK10982 galactose/methyl gala 99.1 7.1E-10 1.5E-14 132.1 13.3 31 323-353 18-48 (491)
307 PRK10938 putative molybdenum t 99.1 9.5E-10 2.1E-14 131.0 14.3 31 323-353 23-53 (490)
308 PF01078 Mg_chelatase: Magnesi 99.1 1.4E-10 3E-15 120.1 5.9 118 644-792 1-157 (206)
309 PRK08058 DNA polymerase III su 99.1 2.5E-09 5.5E-14 120.6 16.6 149 644-827 3-180 (329)
310 PRK15429 formate hydrogenlyase 99.1 8.2E-10 1.8E-14 136.6 13.7 195 642-866 372-609 (686)
311 COG0714 MoxR-like ATPases [Gen 99.1 6.8E-10 1.5E-14 125.4 11.4 147 648-828 26-202 (329)
312 PRK09112 DNA polymerase III su 99.0 6.6E-09 1.4E-13 117.7 19.0 181 293-502 20-237 (351)
313 smart00382 AAA ATPases associa 99.0 8.7E-10 1.9E-14 106.2 10.3 128 329-463 2-147 (148)
314 PF07728 AAA_5: AAA domain (dy 99.0 9.6E-11 2.1E-15 115.2 3.5 109 331-454 1-139 (139)
315 smart00382 AAA ATPases associa 99.0 1.1E-09 2.4E-14 105.5 10.7 126 680-816 2-147 (148)
316 COG0593 DnaA ATPase involved i 99.0 3.2E-09 7E-14 120.5 15.9 169 328-510 112-290 (408)
317 TIGR00678 holB DNA polymerase 99.0 2.9E-09 6.3E-14 110.4 14.4 144 328-498 13-184 (188)
318 TIGR00368 Mg chelatase-related 99.0 2.1E-09 4.5E-14 126.7 14.4 208 644-886 190-497 (499)
319 PRK11331 5-methylcytosine-spec 99.0 2.1E-09 4.7E-14 123.0 13.9 140 646-815 175-357 (459)
320 PRK05707 DNA polymerase III su 99.0 4E-09 8.7E-14 118.5 15.8 148 678-849 20-195 (328)
321 PRK10636 putative ABC transpor 99.0 4E-09 8.6E-14 129.3 17.1 31 323-353 21-51 (638)
322 PHA02244 ATPase-like protein 99.0 4.2E-09 9.1E-14 117.7 15.4 122 328-465 118-263 (383)
323 PF06068 TIP49: TIP49 C-termin 99.0 5.5E-09 1.2E-13 115.6 15.8 67 645-719 23-91 (398)
324 TIGR03015 pepcterm_ATPase puta 99.0 1.4E-08 3E-13 111.1 18.8 188 682-889 45-267 (269)
325 PRK13549 xylose transporter AT 99.0 3.1E-09 6.6E-14 127.2 14.7 32 323-354 25-56 (506)
326 PF07728 AAA_5: AAA domain (dy 99.0 6.9E-10 1.5E-14 109.1 7.5 109 682-807 1-139 (139)
327 PRK13409 putative ATPase RIL; 99.0 1.5E-09 3.2E-14 131.3 11.9 57 729-797 461-517 (590)
328 PRK05564 DNA polymerase III su 99.0 1.3E-08 2.9E-13 114.1 18.4 172 294-500 2-185 (313)
329 PF00158 Sigma54_activat: Sigm 99.0 5E-10 1.1E-14 113.9 6.2 136 648-813 1-160 (168)
330 PRK15134 microcin C ABC transp 99.0 5E-09 1.1E-13 126.0 15.7 32 323-354 29-60 (529)
331 TIGR02633 xylG D-xylose ABC tr 99.0 4.9E-09 1.1E-13 125.3 15.3 32 323-354 21-52 (500)
332 PRK11147 ABC transporter ATPas 99.0 7E-09 1.5E-13 127.3 16.9 31 323-353 23-53 (635)
333 TIGR02915 PEP_resp_reg putativ 99.0 1.8E-09 3.9E-14 127.1 11.1 255 646-936 139-441 (445)
334 PF05621 TniB: Bacterial TniB 99.0 2.8E-08 6.1E-13 108.2 19.3 190 678-883 59-284 (302)
335 PRK10762 D-ribose transporter 99.0 3.8E-09 8.3E-14 126.2 13.9 31 323-353 24-54 (501)
336 PRK09700 D-allose transporter 99.0 4.7E-09 1E-13 125.7 14.4 31 323-353 25-55 (510)
337 PRK11361 acetoacetate metaboli 99.0 5.7E-09 1.2E-13 123.2 14.9 234 679-936 165-453 (457)
338 TIGR00602 rad24 checkpoint pro 99.0 1E-08 2.2E-13 123.4 17.0 225 638-889 76-356 (637)
339 PRK15064 ABC transporter ATP-b 99.0 4.1E-09 8.8E-14 126.8 13.7 31 323-353 21-51 (530)
340 PRK11288 araG L-arabinose tran 99.0 9E-09 2E-13 123.0 16.5 31 323-353 24-54 (501)
341 PRK07471 DNA polymerase III su 99.0 2E-08 4.3E-13 114.4 18.4 177 293-500 16-233 (365)
342 COG0593 DnaA ATPase involved i 99.0 1.5E-08 3.2E-13 115.2 17.0 194 679-891 112-316 (408)
343 PRK15439 autoinducer 2 ABC tra 98.9 9.1E-09 2E-13 123.2 15.4 31 323-353 31-61 (510)
344 PRK10261 glutathione transport 98.9 5E-09 1.1E-13 128.2 13.4 57 729-797 471-527 (623)
345 PRK04132 replication factor C 98.9 1.1E-08 2.4E-13 126.0 16.1 153 329-503 564-729 (846)
346 PRK15115 response regulator Gl 98.9 9.1E-09 2E-13 121.1 14.6 233 680-937 157-435 (444)
347 TIGR03269 met_CoM_red_A2 methy 98.9 7.6E-09 1.6E-13 124.2 14.1 31 323-353 20-50 (520)
348 PRK10923 glnG nitrogen regulat 98.9 6.7E-09 1.4E-13 123.1 13.3 256 646-936 138-465 (469)
349 KOG0991 Replication factor C, 98.9 8.7E-09 1.9E-13 106.0 12.1 176 292-497 23-206 (333)
350 COG0714 MoxR-like ATPases [Gen 98.9 4.8E-09 1E-13 118.6 10.7 135 327-474 41-201 (329)
351 KOG1942 DNA helicase, TBP-inte 98.9 3.9E-08 8.4E-13 104.2 16.3 128 740-888 297-438 (456)
352 TIGR01818 ntrC nitrogen regula 98.9 9.8E-09 2.1E-13 121.5 13.6 255 647-936 135-462 (463)
353 COG4172 ABC-type uncharacteriz 98.9 4.4E-09 9.6E-14 116.0 9.6 55 729-795 434-488 (534)
354 COG2607 Predicted ATPase (AAA+ 98.9 9.8E-08 2.1E-12 99.2 18.9 192 291-509 55-276 (287)
355 PF07724 AAA_2: AAA domain (Cd 98.9 7.2E-09 1.6E-13 105.8 10.6 114 328-443 2-132 (171)
356 KOG0990 Replication factor C, 98.9 2.4E-08 5.2E-13 107.7 14.8 189 640-866 35-237 (360)
357 smart00350 MCM minichromosome 98.9 2.5E-08 5.4E-13 119.0 16.3 163 647-829 204-400 (509)
358 PF07724 AAA_2: AAA domain (Cd 98.9 3.4E-09 7.4E-14 108.2 7.6 111 679-796 2-132 (171)
359 PRK11331 5-methylcytosine-spec 98.9 1.4E-08 3E-13 116.5 13.1 122 328-462 193-357 (459)
360 TIGR02030 BchI-ChlI magnesium 98.9 2E-08 4.4E-13 112.9 13.7 153 295-475 3-218 (337)
361 CHL00081 chlI Mg-protoporyphyr 98.9 3.1E-08 6.7E-13 111.5 15.1 159 292-476 13-232 (350)
362 TIGR00602 rad24 checkpoint pro 98.9 2.7E-08 5.8E-13 119.8 15.4 198 291-510 79-324 (637)
363 COG0470 HolB ATPase involved i 98.9 1.8E-08 4E-13 113.1 13.4 148 298-473 3-178 (325)
364 PF13177 DNA_pol3_delta2: DNA 98.9 2.1E-08 4.6E-13 101.5 12.4 133 650-815 1-160 (162)
365 COG1220 HslU ATP-dependent pro 98.9 3.7E-08 8.1E-13 106.5 14.6 83 389-473 251-346 (444)
366 COG2607 Predicted ATPase (AAA+ 98.8 1.2E-07 2.7E-12 98.5 17.5 196 636-861 50-276 (287)
367 PRK13765 ATP-dependent proteas 98.8 2.4E-08 5.3E-13 120.5 14.5 53 638-705 23-75 (637)
368 PRK05707 DNA polymerase III su 98.8 5.6E-08 1.2E-12 109.3 16.3 150 328-500 21-198 (328)
369 TIGR02031 BchD-ChlD magnesium 98.8 1.7E-08 3.6E-13 122.0 12.6 191 681-891 17-261 (589)
370 PF07726 AAA_3: ATPase family 98.8 2.4E-09 5.2E-14 102.3 4.0 104 331-454 1-129 (131)
371 PRK09862 putative ATP-dependen 98.8 3.9E-08 8.5E-13 115.6 14.8 210 644-888 189-492 (506)
372 COG3284 AcoR Transcriptional a 98.8 2.6E-09 5.7E-14 124.7 4.5 225 680-936 336-601 (606)
373 TIGR02974 phageshock_pspF psp 98.8 4.2E-08 9E-13 110.6 14.0 171 327-514 20-233 (329)
374 PRK06871 DNA polymerase III su 98.8 1.5E-07 3.3E-12 105.1 18.0 146 678-849 22-195 (325)
375 PRK10365 transcriptional regul 98.8 2.2E-08 4.7E-13 117.7 11.8 233 679-936 161-441 (441)
376 KOG1942 DNA helicase, TBP-inte 98.8 1.8E-07 3.8E-12 99.3 17.1 111 389-516 297-420 (456)
377 PRK07399 DNA polymerase III su 98.8 8.3E-08 1.8E-12 107.4 15.5 179 295-504 3-220 (314)
378 PRK15424 propionate catabolism 98.8 6.5E-08 1.4E-12 115.0 15.2 193 293-512 216-463 (538)
379 COG0606 Predicted ATPase with 98.8 7.5E-09 1.6E-13 117.6 6.8 145 642-820 175-383 (490)
380 PLN03073 ABC transporter F fam 98.8 2E-08 4.3E-13 123.9 11.0 30 323-352 197-226 (718)
381 PRK08769 DNA polymerase III su 98.8 2.3E-07 5E-12 103.6 18.4 152 678-852 24-203 (319)
382 PRK11608 pspF phage shock prot 98.8 1.4E-07 3E-12 106.4 16.4 191 296-513 6-239 (326)
383 TIGR03015 pepcterm_ATPase puta 98.8 2.3E-07 4.9E-12 101.6 17.7 176 330-520 44-252 (269)
384 COG1219 ClpX ATP-dependent pro 98.8 3.2E-08 6.9E-13 106.3 10.4 129 298-426 63-203 (408)
385 COG3829 RocR Transcriptional r 98.8 5.6E-08 1.2E-12 111.9 13.1 196 290-512 239-477 (560)
386 PF07726 AAA_3: ATPase family 98.8 3.7E-09 8.1E-14 100.9 2.9 104 682-807 1-129 (131)
387 PRK13531 regulatory ATPase Rav 98.7 4.1E-08 9E-13 113.5 11.6 149 298-475 22-193 (498)
388 PRK06964 DNA polymerase III su 98.7 6.7E-08 1.4E-12 108.8 12.8 134 677-828 18-203 (342)
389 TIGR01817 nifA Nif-specific re 98.7 1.2E-07 2.6E-12 114.2 16.0 195 293-514 193-428 (534)
390 TIGR02329 propionate_PrpR prop 98.7 8.9E-08 1.9E-12 113.9 14.4 194 293-513 209-449 (526)
391 PRK07993 DNA polymerase III su 98.7 2.2E-07 4.8E-12 104.8 16.7 148 677-849 21-196 (334)
392 PRK05022 anaerobic nitric oxid 98.7 1.3E-07 2.7E-12 113.2 15.5 194 294-514 185-420 (509)
393 PRK08058 DNA polymerase III su 98.7 8.7E-08 1.9E-12 108.2 12.9 148 295-474 4-180 (329)
394 COG3604 FhlA Transcriptional r 98.7 8.9E-08 1.9E-12 108.9 12.5 195 293-514 220-456 (550)
395 KOG0062 ATPase component of AB 98.7 6.8E-07 1.5E-11 101.9 19.5 113 670-798 378-543 (582)
396 PRK15429 formate hydrogenlyase 98.7 2.9E-07 6.3E-12 114.1 17.8 193 293-513 373-608 (686)
397 KOG2035 Replication factor C, 98.7 1E-06 2.2E-11 93.4 18.8 176 643-849 10-220 (351)
398 KOG0927 Predicted transporter 98.7 3.9E-07 8.5E-12 104.4 17.0 29 324-352 96-124 (614)
399 PRK11819 putative ABC transpor 98.7 4.2E-07 9.1E-12 110.1 18.6 31 323-353 27-57 (556)
400 PF00158 Sigma54_activat: Sigm 98.7 3.9E-08 8.4E-13 100.1 8.0 131 299-456 2-156 (168)
401 PF01078 Mg_chelatase: Magnesi 98.7 1.8E-08 3.9E-13 104.5 5.5 47 294-354 1-47 (206)
402 smart00763 AAA_PrkA PrkA AAA d 98.7 4.2E-07 9.2E-12 101.9 16.8 59 297-362 52-118 (361)
403 COG3283 TyrR Transcriptional r 98.7 1.2E-07 2.6E-12 103.1 11.8 233 641-910 199-476 (511)
404 TIGR03719 ABC_ABC_ChvD ATP-bin 98.7 3.7E-07 7.9E-12 110.5 17.3 31 323-353 25-55 (552)
405 TIGR02442 Cob-chelat-sub cobal 98.7 2E-07 4.4E-12 113.9 15.0 155 295-474 3-212 (633)
406 KOG2035 Replication factor C, 98.7 8.1E-07 1.8E-11 94.1 17.1 174 293-499 10-222 (351)
407 PRK11388 DNA-binding transcrip 98.7 3.4E-07 7.3E-12 112.7 16.8 194 293-513 322-553 (638)
408 COG1116 TauB ABC-type nitrate/ 98.7 2.2E-07 4.8E-12 98.2 12.9 31 323-353 23-53 (248)
409 KOG0066 eIF2-interacting prote 98.7 3.6E-07 7.9E-12 101.3 14.9 30 675-704 608-637 (807)
410 PRK06090 DNA polymerase III su 98.6 6.4E-07 1.4E-11 100.0 16.8 130 677-827 22-178 (319)
411 PF13177 DNA_pol3_delta2: DNA 98.6 3.1E-07 6.7E-12 93.1 13.1 132 300-461 1-159 (162)
412 PRK10820 DNA-binding transcrip 98.6 2.3E-07 5.1E-12 111.0 14.0 195 292-513 200-436 (520)
413 PRK08699 DNA polymerase III su 98.6 3.2E-07 7E-12 103.1 14.0 132 678-827 19-183 (325)
414 KOG0745 Putative ATP-dependent 98.6 1.2E-07 2.7E-12 105.4 10.1 97 329-425 226-331 (564)
415 KOG2680 DNA helicase TIP49, TB 98.6 1.5E-06 3.2E-11 92.8 17.6 130 740-890 289-431 (454)
416 TIGR00368 Mg chelatase-related 98.6 2.4E-07 5.3E-12 109.4 13.2 174 293-519 189-424 (499)
417 COG2204 AtoC Response regulato 98.6 1.7E-07 3.7E-12 108.2 11.6 194 294-514 139-374 (464)
418 PRK06871 DNA polymerase III su 98.6 1.2E-06 2.5E-11 98.1 17.9 147 328-499 23-197 (325)
419 smart00763 AAA_PrkA PrkA AAA d 98.6 2.4E-07 5.3E-12 103.8 12.4 59 647-713 52-118 (361)
420 KOG2680 DNA helicase TIP49, TB 98.6 1.6E-06 3.5E-11 92.5 17.5 118 389-523 289-418 (454)
421 COG1221 PspF Transcriptional r 98.6 2.4E-07 5.3E-12 105.1 12.0 192 294-514 76-309 (403)
422 KOG0745 Putative ATP-dependent 98.6 2.2E-07 4.7E-12 103.5 11.2 99 681-779 227-332 (564)
423 PRK06964 DNA polymerase III su 98.6 3.7E-07 8.1E-12 102.8 13.1 132 327-474 19-202 (342)
424 PRK07993 DNA polymerase III su 98.6 1.5E-06 3.2E-11 98.1 17.7 151 327-501 22-200 (334)
425 smart00350 MCM minichromosome 98.6 1.6E-07 3.4E-12 112.2 10.5 164 297-477 204-401 (509)
426 COG1239 ChlI Mg-chelatase subu 98.6 1.4E-06 2.9E-11 98.2 16.9 158 643-831 14-234 (423)
427 COG1125 OpuBA ABC-type proline 98.6 9.7E-08 2.1E-12 100.2 7.2 45 323-367 21-67 (309)
428 PRK08769 DNA polymerase III su 98.6 1.9E-06 4.2E-11 96.2 17.3 152 329-502 26-205 (319)
429 PTZ00111 DNA replication licen 98.5 8E-07 1.7E-11 109.3 15.1 155 647-820 451-648 (915)
430 COG1120 FepC ABC-type cobalami 98.5 4.2E-08 9.1E-13 105.3 3.4 83 729-829 146-236 (258)
431 PRK08116 hypothetical protein; 98.5 3.2E-07 6.8E-12 100.6 10.1 131 328-474 113-258 (268)
432 PRK08116 hypothetical protein; 98.5 3.2E-07 6.9E-12 100.6 9.6 123 680-818 114-251 (268)
433 TIGR02655 circ_KaiC circadian 98.5 7.5E-07 1.6E-11 105.8 12.8 78 676-753 259-367 (484)
434 TIGR02031 BchD-ChlD magnesium 98.5 6.4E-07 1.4E-11 108.5 12.0 134 330-476 17-174 (589)
435 PF01637 Arch_ATPase: Archaeal 98.5 9.4E-07 2E-11 93.7 11.8 181 299-499 2-228 (234)
436 COG1116 TauB ABC-type nitrate/ 98.5 2.6E-07 5.7E-12 97.6 7.1 131 671-817 18-221 (248)
437 TIGR00764 lon_rel lon-related 98.5 1.4E-06 3.1E-11 105.7 14.3 49 294-356 16-64 (608)
438 KOG0990 Replication factor C, 98.5 3.8E-07 8.2E-12 98.6 8.3 170 293-493 38-220 (360)
439 KOG1514 Origin recognition com 98.5 3E-06 6.5E-11 99.9 16.1 179 329-519 422-633 (767)
440 PRK06090 DNA polymerase III su 98.4 3E-06 6.5E-11 94.6 15.0 128 328-474 24-178 (319)
441 PF14532 Sigma54_activ_2: Sigm 98.4 1.1E-07 2.3E-12 93.7 3.1 106 650-794 2-110 (138)
442 PF05621 TniB: Bacterial TniB 98.4 7.4E-06 1.6E-10 89.6 17.4 202 302-524 43-279 (302)
443 TIGR02915 PEP_resp_reg putativ 98.4 1.3E-06 2.7E-11 103.0 12.1 188 296-513 139-371 (445)
444 COG1126 GlnQ ABC-type polar am 98.4 5.4E-07 1.2E-11 92.9 7.5 113 671-796 17-198 (240)
445 KOG1514 Origin recognition com 98.4 8.1E-06 1.8E-10 96.3 18.0 220 648-891 398-658 (767)
446 PRK08699 DNA polymerase III su 98.4 2E-06 4.2E-11 96.8 11.9 132 327-474 19-183 (325)
447 PF03215 Rad17: Rad17 cell cyc 98.4 8E-06 1.7E-10 97.0 17.5 203 641-867 14-269 (519)
448 PRK08181 transposase; Validate 98.4 4.4E-07 9.6E-12 99.1 6.4 101 328-441 105-209 (269)
449 PRK12377 putative replication 98.4 1.3E-06 2.7E-11 94.5 9.3 101 680-794 101-206 (248)
450 PRK09183 transposase/IS protei 98.3 8.5E-07 1.8E-11 96.8 7.9 104 326-441 99-206 (259)
451 COG1126 GlnQ ABC-type polar am 98.3 8.1E-07 1.8E-11 91.6 7.1 107 323-440 22-195 (240)
452 PF03215 Rad17: Rad17 cell cyc 98.3 1.5E-05 3.2E-10 94.7 18.6 201 293-515 16-269 (519)
453 COG1239 ChlI Mg-chelatase subu 98.3 7.2E-06 1.6E-10 92.5 15.0 173 294-493 15-247 (423)
454 PF13173 AAA_14: AAA domain 98.3 1.9E-06 4.2E-11 83.7 9.0 121 329-467 2-126 (128)
455 PF14532 Sigma54_activ_2: Sigm 98.3 1.2E-06 2.6E-11 86.2 7.4 88 327-440 19-109 (138)
456 PRK09302 circadian clock prote 98.3 6.4E-06 1.4E-10 98.8 14.8 112 325-442 27-178 (509)
457 COG3842 PotA ABC-type spermidi 98.3 3.9E-07 8.4E-12 102.2 4.1 110 323-442 25-198 (352)
458 PF01695 IstB_IS21: IstB-like 98.3 4.9E-07 1.1E-11 93.0 4.5 101 327-440 45-149 (178)
459 KOG2227 Pre-initiation complex 98.3 2.2E-05 4.7E-10 89.1 17.7 201 296-514 150-379 (529)
460 PRK06526 transposase; Provisio 98.3 8E-07 1.7E-11 96.5 6.0 102 327-441 96-201 (254)
461 PRK08181 transposase; Validate 98.3 1.4E-06 2.9E-11 95.3 7.6 101 679-794 105-209 (269)
462 COG4619 ABC-type uncharacteriz 98.3 3.6E-06 7.7E-11 83.4 9.7 31 323-353 23-53 (223)
463 PF01637 Arch_ATPase: Archaeal 98.3 3.5E-06 7.6E-11 89.3 10.4 179 649-851 2-228 (234)
464 COG1484 DnaC DNA replication p 98.3 3.3E-06 7.1E-11 91.8 10.3 102 328-441 104-209 (254)
465 COG1121 ZnuC ABC-type Mn/Zn tr 98.3 1.3E-06 2.7E-11 93.6 6.8 56 729-797 147-202 (254)
466 PRK11361 acetoacetate metaboli 98.3 1.9E-05 4.2E-10 93.3 17.3 166 328-513 165-375 (457)
467 PRK06526 transposase; Provisio 98.3 1.2E-06 2.5E-11 95.3 6.3 101 679-794 97-201 (254)
468 PRK09862 putative ATP-dependen 98.3 2.2E-06 4.7E-11 101.1 8.9 143 294-466 189-391 (506)
469 COG1484 DnaC DNA replication p 98.2 3E-06 6.4E-11 92.1 9.2 104 679-796 104-211 (254)
470 PRK06921 hypothetical protein; 98.2 4.1E-06 8.8E-11 91.8 10.3 104 328-440 116-224 (266)
471 PRK07952 DNA replication prote 98.2 3.3E-06 7.2E-11 91.0 9.3 100 681-794 100-205 (244)
472 KOG2227 Pre-initiation complex 98.2 4.9E-05 1.1E-09 86.3 18.7 225 646-891 150-418 (529)
473 PRK08939 primosomal protein Dn 98.2 2.6E-06 5.7E-11 95.0 8.5 102 679-794 155-261 (306)
474 PRK06835 DNA replication prote 98.2 4E-06 8.6E-11 94.3 9.9 100 329-440 183-288 (329)
475 PRK09183 transposase/IS protei 98.2 2.5E-06 5.5E-11 93.1 8.0 102 679-794 101-206 (259)
476 cd03216 ABC_Carb_Monos_I This 98.2 2.9E-06 6.4E-11 86.0 7.9 112 323-445 20-146 (163)
477 COG1117 PstB ABC-type phosphat 98.2 5.2E-06 1.1E-10 85.5 9.4 54 729-796 157-210 (253)
478 PRK08939 primosomal protein Dn 98.2 3.3E-06 7.2E-11 94.2 8.8 102 328-441 155-261 (306)
479 COG1129 MglA ABC-type sugar tr 98.2 8.4E-06 1.8E-10 94.9 12.3 31 323-353 28-58 (500)
480 COG1245 Predicted ATPase, RNas 98.2 7.6E-06 1.7E-10 92.2 11.2 29 327-355 98-126 (591)
481 PRK10923 glnG nitrogen regulat 98.2 1.9E-05 4.2E-10 93.7 15.6 189 296-514 138-371 (469)
482 cd03216 ABC_Carb_Monos_I This 98.2 4.2E-06 9.1E-11 84.9 8.5 109 676-797 22-145 (163)
483 cd03214 ABC_Iron-Siderophores_ 98.2 3.3E-06 7.2E-11 87.0 7.8 113 323-445 19-162 (180)
484 PF13173 AAA_14: AAA domain 98.2 3.7E-06 8.1E-11 81.6 7.6 120 681-820 3-126 (128)
485 COG1124 DppF ABC-type dipeptid 98.2 6.4E-06 1.4E-10 86.6 9.5 113 323-445 27-206 (252)
486 COG1127 Ttg2A ABC-type transpo 98.2 4.6E-06 1E-10 87.4 8.3 57 729-797 153-209 (263)
487 PRK06835 DNA replication prote 98.2 5.1E-06 1.1E-10 93.4 9.4 101 680-794 183-289 (329)
488 cd03222 ABC_RNaseL_inhibitor T 98.2 3.6E-06 7.9E-11 86.4 7.4 109 677-797 22-135 (177)
489 COG1122 CbiO ABC-type cobalt t 98.2 1.2E-06 2.5E-11 93.9 3.9 57 729-797 146-202 (235)
490 PRK06921 hypothetical protein; 98.2 6.6E-06 1.4E-10 90.1 9.8 105 679-794 116-225 (266)
491 COG2884 FtsE Predicted ATPase 98.2 5.8E-06 1.3E-10 83.6 8.5 118 669-799 15-202 (223)
492 COG1120 FepC ABC-type cobalami 98.2 3.3E-06 7.1E-11 90.9 7.2 114 323-449 22-204 (258)
493 PF13401 AAA_22: AAA domain; P 98.2 8.2E-06 1.8E-10 78.9 9.2 99 328-440 3-125 (131)
494 COG1136 SalX ABC-type antimicr 98.2 3.4E-06 7.3E-11 89.1 6.9 31 323-353 25-55 (226)
495 COG4608 AppF ABC-type oligopep 98.2 5.2E-06 1.1E-10 89.1 8.3 110 323-442 33-171 (268)
496 COG1136 SalX ABC-type antimicr 98.2 3.6E-06 7.9E-11 88.8 7.0 69 727-814 148-216 (226)
497 PTZ00111 DNA replication licen 98.2 6.6E-06 1.4E-10 101.4 10.3 134 326-476 489-657 (915)
498 COG1124 DppF ABC-type dipeptid 98.1 4.9E-06 1.1E-10 87.5 7.8 56 729-796 149-204 (252)
499 COG3839 MalK ABC-type sugar tr 98.1 6.7E-06 1.4E-10 91.9 9.2 109 323-441 23-194 (338)
500 cd01120 RecA-like_NTPases RecA 98.1 7.7E-06 1.7E-10 81.5 8.8 110 683-796 2-139 (165)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-109 Score=922.43 Aligned_cols=681 Identities=44% Similarity=0.643 Sum_probs=555.7
Q ss_pred ccCCCCCCCCCCCCCccccCCCCCccccccccccCcCCCcccchhhhhhhcchhHHHHHHHHHHhhccCCcccCCCEEEE
Q 002169 131 DSSPKTPMYQPRLSSQSVNQLASPVSEDSVSKSLNWNSLNVDAFDIKEVLEDESAIKLLQTCAASWLYSRSLLCGNLVAV 210 (957)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (957)
.+++|+ +..++.++ .++-+|+.+|++.-- .+.++ ++.++..|+.+++|++.|.++.
T Consensus 85 kst~~~--~~~~~~s~--~~~~~~~~~ds~~e~--~~~k~----~~~e~~sn~~~kkl~s~~~~r~-------------- 140 (802)
T KOG0733|consen 85 KSTLKD--NLQKFASP--KVSKSPIIEDSVAER--QSEKN----DIIEVDSNEANKKLLSLWAKRA-------------- 140 (802)
T ss_pred cccchh--hHHHhcCC--ccccCccccchHHHH--hcccC----cceeecchHHHHHHHHHHHhhc--------------
Confidence 566666 44455533 556778888866411 11111 7889999999999999997211
Q ss_pred eecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEcCCcccccccccCCCCCchhhhhhccccc
Q 002169 211 PMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQAT 290 (957)
Q Consensus 211 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (957)
.+. .++....+..+.+.+.|++.+.......... +..-....+.
T Consensus 141 --------------~~~-------------~~d~~~k~~~~~~~~~~k~~l~~~~a~~~~r---------~~~~~~~~~~ 184 (802)
T KOG0733|consen 141 --------------EKR-------------TEDSKPKNHAEMIVPGTKVSLHLSLARGILR---------QFVEGLEFPE 184 (802)
T ss_pred --------------ccC-------------CccccccccccccCcchhhhhhhhhcchhhh---------hhhcccCCCC
Confidence 110 0112223356777777777754321110000 0000001111
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
...+|.+|||++.+...|.+++.....++.|..+|+.|++|||||||||||||+||+++|++++.+|+.|+++++++.+.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 24578999999999999999999965559999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccC----CCeEEEEecCCCCCchh
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT----DGVLVIAATNRPDSIEP 446 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~----~~v~vI~ttN~~~~ld~ 446 (957)
|++|++++++|+.|....|||+||||||++.++|+..+.++++|++++|++.||++... ..|+||++||+||.|||
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDp 344 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP 344 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCH
Confidence 99999999999999999999999999999999999999999999999999999999554 56999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcccccccc
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSD 526 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~ 526 (957)
+|||+||||++|.+..|+..+|.+||+.+++++.+. .+.++..||..|+||+|+||.+||.+|+..|++|.......-.
T Consensus 345 aLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~ 423 (802)
T KOG0733|consen 345 ALRRAGRFDREICLGVPSETAREEILRIICRGLRLS-GDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPL 423 (802)
T ss_pred HHhccccccceeeecCCchHHHHHHHHHHHhhCCCC-CCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcc
Confidence 999999999999999999999999999999999888 4888999999999999999999999999999999765333100
Q ss_pred ccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCCCc
Q 002169 527 VLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMF 606 (957)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (957)
..+-..+.++...+..++ |+... ++--...+.+...+...+.+..+. .
T Consensus 424 -----~~~~~~ed~~~~~~~~d~-----------------S~i~~--~~~~~~~~~ld~v~~~~i~~~~d~--------~ 471 (802)
T KOG0733|consen 424 -----TKVPISEDSSNKDAEEDQ-----------------SSIKI--TSNAERPLELDRVVQDAILNNPDP--------L 471 (802)
T ss_pred -----ccCCccccccCCCccchh-----------------hhhhc--CCcccccccHHHHHHHHHHhCCCC--------c
Confidence 000000111101100000 00000 000001222223333333332222 3
Q ss_pred cccccccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceee
Q 002169 607 MSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMF 686 (957)
Q Consensus 607 ~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~ 686 (957)
..|....+.+.++||..|+..++|++.||++..+|+|+|+||+++++++.+|..+|.||.++++.|+.+|+..|.|+||+
T Consensus 472 S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~ 551 (802)
T KOG0733|consen 472 SKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLC 551 (802)
T ss_pred ChHHhccceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEe
Confidence 35777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchH
Q 002169 687 GPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD 766 (957)
Q Consensus 687 GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~ 766 (957)
||||||||+||||+|++.+.+||.|++++|+++|||++++++|.+|.+|+..+||||||||+|+|.+.|+..+ ..+..
T Consensus 552 GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~ 629 (802)
T KOG0733|consen 552 GPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSS 629 (802)
T ss_pred CCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997664 57889
Q ss_pred HHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHh--cCCCCCcccHHHHH
Q 002169 767 RVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLR--KIPCSSDVNIRELA 844 (957)
Q Consensus 767 ~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~--~~~~~~~~~l~~la 844 (957)
|++||||++|||+..+.+|.||+|||+|+.||||++||||||+.+|+++|+.++|..||+.+++ +.++..|++++++|
T Consensus 630 RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia 709 (802)
T KOG0733|consen 630 RVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIA 709 (802)
T ss_pred HHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred HHcc--CCcHHHHHHHHHHHHHHHHHHhcC--------------CCCCCHHHHHHHHHhhCCCchHHHHHHHHHHHHH
Q 002169 845 CLSE--GCTGADISLICREAAISAIEENLD--------------ASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRL 906 (957)
Q Consensus 845 ~~t~--g~sg~dl~~l~~eA~~~a~~~~~~--------------~~~It~~d~~~al~~~~p~~~~~y~~~~~~~~~~ 906 (957)
+.+. ||||+||..+|++|.+.|+++.+. ...+|+.||++|+++++|+..+.-++..+.+++.
T Consensus 710 ~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~ 787 (802)
T KOG0733|consen 710 RNTKCEGFTGADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKS 787 (802)
T ss_pred hcccccCCchhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhh
Confidence 9887 999999999999999999998541 1247888999999999999555444444444444
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-95 Score=829.24 Aligned_cols=502 Identities=51% Similarity=0.899 Sum_probs=480.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhH
Q 002169 296 SKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESE 374 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e 374 (957)
+++||+..+...+++++++++.+ ..+..+|+++++++|+|||||||||.+++++|++.+++++.+++++++.++.||++
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte 263 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE 263 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence 68999999999999999999988 77788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC-CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCC
Q 002169 375 QALHEVFDSASQSA-PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGR 453 (957)
Q Consensus 375 ~~i~~vf~~a~~~~-p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gR 453 (957)
+.+|..|+.|...+ |++|||||+|++++++..... .+.|+..+|+++||+.....+++||++||+|+.||+++|| ||
T Consensus 264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gR 341 (693)
T KOG0730|consen 264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GR 341 (693)
T ss_pred HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CC
Confidence 99999999999999 999999999999999876655 7899999999999999888999999999999999999999 99
Q ss_pred cceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccc
Q 002169 454 LDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGT 533 (957)
Q Consensus 454 fd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~~~~~~~~ 533 (957)
||++++|+.|+..+|.+|++.+++.++.. ++.+++.+|..++||+|+|+.++|++|++.++|+
T Consensus 342 fd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------------- 404 (693)
T KOG0730|consen 342 FDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------------- 404 (693)
T ss_pred CcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------------
Confidence 99999999999999999999999999987 8899999999999999999999999999888765
Q ss_pred cccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCCCcccccccc
Q 002169 534 LFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCA 613 (957)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 613 (957)
T Consensus 405 -------------------------------------------------------------------------------- 404 (693)
T KOG0730|consen 405 -------------------------------------------------------------------------------- 404 (693)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChh
Q 002169 614 LKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSK 693 (957)
Q Consensus 614 ~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGK 693 (957)
++++|..++..++|+++|+..+++|+++|+||+|++++|++|++.+.||++|++.|.++|+.||+||||||||||||
T Consensus 405 ---~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~K 481 (693)
T KOG0730|consen 405 ---TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGK 481 (693)
T ss_pred ---hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcch
Confidence 23578889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHH
Q 002169 694 TLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 773 (957)
Q Consensus 694 TtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL 773 (957)
|++|||+|++++.+|+.|++++++++|+|++|+.+|.+|++|++.+||||||||||+++..|+.. +.++.+|++++||
T Consensus 482 T~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~--~~~v~~RVlsqLL 559 (693)
T KOG0730|consen 482 TLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS--SSGVTDRVLSQLL 559 (693)
T ss_pred HHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC--ccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999743 3389999999999
Q ss_pred HHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHH
Q 002169 774 VELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGA 853 (957)
Q Consensus 774 ~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~ 853 (957)
++|||+....+|+||+|||+|+.||+||+||||||++||||+||.+.|.+||+.+++++++.+++++.+||..|+||||+
T Consensus 560 tEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGA 639 (693)
T KOG0730|consen 560 TEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGA 639 (693)
T ss_pred HHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC----chHHHHHHHH
Q 002169 854 DISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS----EIHSYKELSA 901 (957)
Q Consensus 854 dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~----~~~~y~~~~~ 901 (957)
||.++|++|+..|+++.++...|+.+||++|++.++++ .++.|+.+.+
T Consensus 640 el~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~ 691 (693)
T KOG0730|consen 640 EIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSLTSELLEKYEDFAA 691 (693)
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccCCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998 5556666543
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.5e-79 Score=755.76 Aligned_cols=604 Identities=47% Similarity=0.792 Sum_probs=535.6
Q ss_pred HHHHHHHhhccCCcccCCCEEEEeecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEcCCccc
Q 002169 188 LLQTCAASWLYSRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPLNA 267 (957)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~~~~ 267 (957)
.....++.++.++++..|+.|.+.+.+....|.|..+.|. +.+.+...|.+.+......
T Consensus 107 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p~---------------------~~~~~~~~t~~~~~~~~~~ 165 (733)
T TIGR01243 107 DFVDYVKEFLLGKPISKGETVIVPVLEGALPFVVVSTQPA---------------------GFVYVTEATEVEIREKPVR 165 (733)
T ss_pred chHHHHHHHHcCCCCCCCCEEEecccCcceeEEEEecCCC---------------------CcEEECCCceEEecCCccc
Confidence 4456778899999999999999999888888998887774 4677888888886432110
Q ss_pred ccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHH
Q 002169 268 VSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLA 346 (957)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLa 346 (957)
. . ........+|++|+|++.+++.|++++.+++.+ +.+..+++.+++++|||||||||||++|
T Consensus 166 ~------~----------~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 166 E------E----------IERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred c------c----------cccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 0 0 000123467899999999999999999999877 7788999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc
Q 002169 347 RLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV 426 (957)
Q Consensus 347 ralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l 426 (957)
+++|++++.+++.++++++.+.+.|+.+..++.+|+.+....|+||||||+|.++++++...++.+.+++.+|+.+|+++
T Consensus 230 raia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l 309 (733)
T TIGR01243 230 KAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGL 309 (733)
T ss_pred HHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999887766777889999999999999
Q ss_pred ccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHH
Q 002169 427 CRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAAL 506 (957)
Q Consensus 427 ~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l 506 (957)
...+.++||++||+++.+|++++|+|||++.+.++.|+.++|.+|++.+.+.+.+. .+.+++.++..++||+++|+..+
T Consensus 310 ~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~d~~l~~la~~t~G~~gadl~~l 388 (733)
T TIGR01243 310 KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-EDVDLDKLAEVTHGFVGADLAAL 388 (733)
T ss_pred ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-cccCHHHHHHhCCCCCHHHHHHH
Confidence 88888999999999999999999999999999999999999999999988887654 56678999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhc
Q 002169 507 CNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGT 586 (957)
Q Consensus 507 ~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (957)
|++|++.+++|..........
T Consensus 389 ~~~a~~~al~r~~~~~~~~~~----------------------------------------------------------- 409 (733)
T TIGR01243 389 AKEAAMAALRRFIREGKINFE----------------------------------------------------------- 409 (733)
T ss_pred HHHHHHHHHHHHhhccccccc-----------------------------------------------------------
Confidence 999999999886431110000
Q ss_pred HHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchh
Q 002169 587 VSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQ 666 (957)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~ 666 (957)
...++.+......++.+||..++..+.|+.+++...+.|.++|++|+|++.+|+.|.+.+.||+
T Consensus 410 ----------------~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~ 473 (733)
T TIGR01243 410 ----------------AEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPL 473 (733)
T ss_pred ----------------cccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhh
Confidence 0001122334456889999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEe
Q 002169 667 KHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFD 746 (957)
Q Consensus 667 ~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiD 746 (957)
++++.+++++.++++|+|||||||||||++|+++|++++.+|+.+++++++++|+|++++.++.+|..|+..+|||||||
T Consensus 474 ~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiD 553 (733)
T TIGR01243 474 KHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFD 553 (733)
T ss_pred hCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHH
Q 002169 747 EIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFR 826 (957)
Q Consensus 747 Eid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~ 826 (957)
|+|++++.|+... ......+++++||.+|+++....+++||+|||+++.||++++||||||+.|++++|+.++|.+||+
T Consensus 554 Eid~l~~~r~~~~-~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 554 EIDAIAPARGARF-DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFK 632 (733)
T ss_pred ChhhhhccCCCCC-CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHH
Confidence 9999998876442 235678999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC----------------CCCCCHHHHHHHHHhhCC
Q 002169 827 IHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD----------------ASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 827 ~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~----------------~~~It~~d~~~al~~~~p 890 (957)
.+.++.++..++++..+|..|+||+|+||.++|++|++.|+++... ...|+.+||.+|+++++|
T Consensus 633 ~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~p 712 (733)
T TIGR01243 633 IHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKP 712 (733)
T ss_pred HHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999986421 236999999999999999
Q ss_pred C----chHHHHHHHHHHHH
Q 002169 891 S----EIHSYKELSAKFQR 905 (957)
Q Consensus 891 ~----~~~~y~~~~~~~~~ 905 (957)
+ ++..|++|.+.|.+
T Consensus 713 s~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 713 SVSKEDMLRYERLAKELKR 731 (733)
T ss_pred CCCHHHHHHHHHHHHHhcc
Confidence 9 55689998888753
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-76 Score=676.74 Aligned_cols=603 Identities=34% Similarity=0.551 Sum_probs=489.9
Q ss_pred HHHHHHHHHhhcc-CCcccCCCEEEEeecCee------------------eEEEEEeecCCCCcCccCCCCccccccccC
Q 002169 186 IKLLQTCAASWLY-SRSLLCGNLVAVPMLSEI------------------SIFLVIGANKLPADLTNERSQPQVTESMDH 246 (957)
Q Consensus 186 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (957)
..++.+-+++++. .|.+..||.+.|++.+.+ +.|.|.++++.
T Consensus 303 ~~~~~~~l~~~f~t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~------------------- 363 (953)
T KOG0736|consen 303 AGNIDVVLKKHFKTPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPG------------------- 363 (953)
T ss_pred hhHHHHHHHHHhCcceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCC-------------------
Confidence 4555666666665 699999999999988653 34455555442
Q ss_pred CCCcEEEcCC-ceEEEcCCcccccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcC
Q 002169 247 ESNAFVINHE-TKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLG 325 (957)
Q Consensus 247 ~~~~~~i~~~-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~ 325 (957)
.+..|+|+++ |++...+..+. . .+..+++...... +-..-+.+..+-.+..+....+.... .+
T Consensus 364 ~~~~~~i~~~~T~lv~~~~~ss---~-~~~lps~~~~l~n---------~~~~~~~~~~~~~l~~vl~p~~~~s~---~~ 427 (953)
T KOG0736|consen 364 NESAYIIDTNHTSLVLVGATSS---R-VPLLPSSLSTLWN---------SLSPPGLEAKVLELVAVLSPQKQPSG---AL 427 (953)
T ss_pred ccceEEEcCCCceEEEcccccc---C-CcCCChhhHHHhc---------cCCCccchHHHHHHHHHhCcccCcch---hc
Confidence 1245777776 99998765542 2 1222222222211 12234555555556666555443322 34
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARK 405 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~ 405 (957)
+.-...+||+|+||||||++++++|.++|.++++++|.++.....+..+.++...|+.|+...|+|||+-++|.+...++
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d 507 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD 507 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC
Confidence 45566899999999999999999999999999999999999999999999999999999999999999999999985544
Q ss_pred CCCchHHHHHHHHHHHHhh---ccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCC
Q 002169 406 DGGEELSQRMVATLLNLMD---GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHS 482 (957)
Q Consensus 406 ~~~~~~~~~i~~~Ll~~ld---~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~ 482 (957)
. ..+.++...+..++. ......+++||++++..+.+++.+++ -|-.+|.++.|++++|.+||++++....+.
T Consensus 508 g---ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n 582 (953)
T KOG0736|consen 508 G---GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLN 582 (953)
T ss_pred C---chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 4 234455444444443 23456789999999999999999998 666689999999999999999999888766
Q ss_pred CChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccc
Q 002169 483 LLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCL 562 (957)
Q Consensus 483 l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 562 (957)
.+..+..++.++.||+.+|+.++...+...+..|.....- ++.+.
T Consensus 583 -~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l---------------------------~g~~~------- 627 (953)
T KOG0736|consen 583 -QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGL---------------------------AGGLQ------- 627 (953)
T ss_pred -hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcc---------------------------cccch-------
Confidence 7788899999999999999999988775555444322110 00000
Q ss_pred cCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhh-hhHHhhcC
Q 002169 563 DSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAM-REVILEVP 641 (957)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~-~~~~~e~p 641 (957)
+..+..+ ......++++||.+++...+.+.. ......+|
T Consensus 628 --------------------------~~~~~~~--------------~~~~~~l~~edf~kals~~~~~fs~aiGAPKIP 667 (953)
T KOG0736|consen 628 --------------------------EEDEGEL--------------CAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIP 667 (953)
T ss_pred --------------------------hcccccc--------------ccccceecHHHHHHHHHHHHHhhhhhcCCCCCC
Confidence 0000000 112356889999999988876643 34467899
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccc
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWV 721 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~v 721 (957)
+|+|+||||++++|.+|.+.|..|++|+++|.. |+++..|||||||||||||++|||+|.++..+|++|++++++++|+
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYV 746 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYV 746 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHh
Confidence 999999999999999999999999999999986 8899999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--cCCcEEEEEecCCCCCCCh
Q 002169 722 GESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--QRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 722 g~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--~~~~v~VI~aTN~~~~id~ 799 (957)
|++|+++|++|++||..+||||||||+|++++.|+..++++++.+|+++|||.+||++. ...+|+||+|||||+.|||
T Consensus 747 GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDp 826 (953)
T KOG0736|consen 747 GQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDP 826 (953)
T ss_pred cchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccCh
Confidence 99999999999999999999999999999999999999999999999999999999997 4668999999999999999
Q ss_pred hhhCCCCcceecccCCCCHH-HHHHHHHHHHhcCCCCCcccHHHHHHHcc-CCcHHHHHHHHHHHHHHHHHHhc------
Q 002169 800 ALLRPGRFDRLLYVGPPNET-DREEIFRIHLRKIPCSSDVNIRELACLSE-GCTGADISLICREAAISAIEENL------ 871 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~-er~~Il~~~l~~~~~~~~~~l~~la~~t~-g~sg~dl~~l~~eA~~~a~~~~~------ 871 (957)
||+||||||+.+|+++++.. .+..+|+...+++.++.++++.++|+.+. .|||+|+..+|.+|++.|+++.+
T Consensus 827 ALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g 906 (953)
T KOG0736|consen 827 ALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESG 906 (953)
T ss_pred hhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999988765 58899999999999999999999999986 89999999999999999999854
Q ss_pred ---------CCCCCCHHHHHHHHHhhCCC----chHHHHHHHHHHH
Q 002169 872 ---------DASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQ 904 (957)
Q Consensus 872 ---------~~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~~ 904 (957)
....|+++||.++.++.+|+ +...|+.++.+|+
T Consensus 907 ~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 907 TISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred cccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 12358999999999999999 7789999888874
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-64 Score=570.17 Aligned_cols=454 Identities=36% Similarity=0.588 Sum_probs=404.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcC----CcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSG----VNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIA 401 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~----~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~ 401 (957)
+..+.+|||+||+|||||.|+++++.+.. +++..++|+.+-........+.+..+|..+..++|+||++|++|.|+
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~ 507 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLA 507 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhh
Confidence 34467899999999999999999998874 46678999999887777777889999999999999999999999999
Q ss_pred cCCcCCC---chHHHHHHHHHHHHhhccccC-CCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHc
Q 002169 402 PARKDGG---EELSQRMVATLLNLMDGVCRT-DGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLS 477 (957)
Q Consensus 402 ~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~-~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~ 477 (957)
....... +....++...|.+.++.+... ..+.||++.+....+.|.|.++++|+..+.++.|+..+|.+||...++
T Consensus 508 ~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s 587 (952)
T KOG0735|consen 508 SASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFS 587 (952)
T ss_pred ccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHH
Confidence 8332222 234556555555666655443 346899999999999999999999999999999999999999999988
Q ss_pred CCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCCcccccccccccccccc
Q 002169 478 GMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITES 557 (957)
Q Consensus 478 ~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (957)
+........+++.++..|.||...|+..++.+|...|+......
T Consensus 588 ~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~------------------------------------ 631 (952)
T KOG0735|consen 588 KNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN------------------------------------ 631 (952)
T ss_pred hhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc------------------------------------
Confidence 87655566778889999999999999999999988887322110
Q ss_pred ccccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhhhHH
Q 002169 558 SRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVI 637 (957)
Q Consensus 558 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~ 637 (957)
... .++.++|.+++....|.++|.+-
T Consensus 632 -----------------------------------------------------~~k-lltke~f~ksL~~F~P~aLR~ik 657 (952)
T KOG0735|consen 632 -----------------------------------------------------GPK-LLTKELFEKSLKDFVPLALRGIK 657 (952)
T ss_pred -----------------------------------------------------Ccc-cchHHHHHHHHHhcChHHhhhcc
Confidence 001 46789999999999999999886
Q ss_pred hhcC-CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 638 LEVP-KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 638 ~e~p-~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
..-+ ..+|+||+|+.++|+.+++.++||.+++..|...+++.+.|||||||||||||.||.++|..++..||.|+++++
T Consensus 658 ~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPEl 737 (952)
T KOG0735|consen 658 LVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPEL 737 (952)
T ss_pred ccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHH
Confidence 5554 499999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
+++|+|.+++++|.+|.+|+..+||||||||+|++++.|+.+. .++++|++||||++|||.+...+|.|++||.||+.
T Consensus 738 L~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs--TGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdl 815 (952)
T KOG0735|consen 738 LSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS--TGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDL 815 (952)
T ss_pred HHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC--CCchHHHHHHHHHhhccccccceEEEEEecCCccc
Confidence 9999999999999999999999999999999999999998764 46999999999999999999999999999999999
Q ss_pred CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 797 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 797 id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
|||||+||||+|+.++.+.|+..+|.+|++..........++|++.+|..|+||+|+|+..++..|-+.|.++.+
T Consensus 816 iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 816 IDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEIL 890 (952)
T ss_pred cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988754
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-60 Score=565.31 Aligned_cols=483 Identities=51% Similarity=0.810 Sum_probs=442.7
Q ss_pred hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCcc
Q 002169 319 STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELD 398 (957)
Q Consensus 319 ~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD 398 (957)
+.++.+++.++++++++||||||||++++++|.. +..+..++++++.+++.|+.+...+.+|+.+....|+++++||+|
T Consensus 8 ~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~ 86 (494)
T COG0464 8 ELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEID 86 (494)
T ss_pred HHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhh
Confidence 5667789999999999999999999999999999 776688999999999999999999999999999999999999999
Q ss_pred ccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC
Q 002169 399 AIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 399 ~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
.+++.+.........+++.+++..++++. ...+.+++.+|++..++++++++|||++.+.+..|+...+.+|++.+...
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~ 165 (494)
T COG0464 87 ALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRL 165 (494)
T ss_pred hcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhc
Confidence 99999887666788899999999999998 44488888999999999999999999999999999999999999998888
Q ss_pred CCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccc
Q 002169 479 MEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESS 558 (957)
Q Consensus 479 ~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (957)
+... .+...+.++..+.||+++++..+++++.+.+.+|...
T Consensus 166 ~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~-------------------------------------- 206 (494)
T COG0464 166 MFLG-PPGTGKTLAARTVGKSGADLGALAKEAALRELRRAID-------------------------------------- 206 (494)
T ss_pred CCCc-ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhc--------------------------------------
Confidence 7765 4778999999999999999999999999998877420
Q ss_pred cccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhhhHHh
Q 002169 559 RDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVIL 638 (957)
Q Consensus 559 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~ 638 (957)
.....+.++..+|..++..+.|+ +++..
T Consensus 207 --------------------------------------------------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~ 234 (494)
T COG0464 207 --------------------------------------------------LVGEYIGVTEDDFEEALKKVLPS--RGVLF 234 (494)
T ss_pred --------------------------------------------------cCcccccccHHHHHHHHHhcCcc--ccccc
Confidence 01123457788999999999988 78888
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
+.+.++|++++|++.+|+.+++.+.|++.+++.|...++++++|+|||||||||||++|+++|.+++.+|+.++++++++
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
+|+|++++.++.+|..|+..+||||||||+|+++..|+...++ ...+++++++.+|+++....+|+||+|||+|+.+|
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~--~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld 392 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG--SGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLD 392 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch--HHHHHHHHHHHHhcCCCccCceEEEecCCCccccC
Confidence 9999999999999999999999999999999999988655332 33799999999999999999999999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC--CCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP--CSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 876 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~--~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~I 876 (957)
+|++||||||++|+|++|+..+|.+||+.++.+.. +..++++..+++.|+||+|+||..+|++|++.++.+.. ...|
T Consensus 393 ~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~-~~~~ 471 (494)
T COG0464 393 PALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR-RREV 471 (494)
T ss_pred HhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-cCCc
Confidence 99999999999999999999999999999999554 45789999999999999999999999999999999864 5579
Q ss_pred CHHHHHHHHHhhCCCchHHHHHH
Q 002169 877 TMQHLKTAIRHVQPSEIHSYKEL 899 (957)
Q Consensus 877 t~~d~~~al~~~~p~~~~~y~~~ 899 (957)
+.+||..|++++.|+.. |++|
T Consensus 472 ~~~~~~~a~~~~~p~~~--~~~~ 492 (494)
T COG0464 472 TLDDFLDALKKIKPSVT--YEEW 492 (494)
T ss_pred cHHHHHHHHHhcCCCCC--hhhc
Confidence 99999999999999844 5554
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-54 Score=460.50 Aligned_cols=252 Identities=46% Similarity=0.761 Sum_probs=239.6
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
+.+.|.++|+||+|+++.+++|+|.++.|+++|++|..+|+.||+|+|||||||||||+||||+|++.++.||++.++++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 45779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
+.+|+|++.+-+|++|+.|+..+||||||||||+++..|...+.+ ...-.|.+-+||++|||+.+.+++-||+|||+++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D 301 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPD 301 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcc
Confidence 999999999999999999999999999999999999998665433 2334577788999999999999999999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.+||||+||||||+.|+||+|+.+.|.+||++|.+++.+..++|++.||+.++|+||+|++++|.||++.|+++. ...
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~--R~~ 379 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER--RDE 379 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc--cCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996 778
Q ss_pred CCHHHHHHHHHhhCC
Q 002169 876 ITMQHLKTAIRHVQP 890 (957)
Q Consensus 876 It~~d~~~al~~~~p 890 (957)
||++||.+|++++..
T Consensus 380 Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 380 VTMEDFLKAVEKVVK 394 (406)
T ss_pred ecHHHHHHHHHHHHh
Confidence 999999999998764
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-50 Score=427.46 Aligned_cols=261 Identities=37% Similarity=0.607 Sum_probs=231.6
Q ss_pred CceEEEcCCcccccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEE
Q 002169 256 ETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLL 334 (957)
Q Consensus 256 ~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL 334 (957)
...|.+....++....+++...|..... .....+.++|++|||++++++.|+|.|++|+.+ +.|+.+|+.||+||||
T Consensus 113 G~rVal~~~s~~Iv~vLp~~~Dp~V~~M--~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLL 190 (406)
T COG1222 113 GMRVALNRDSYSIVRVLPPEVDPRVSVM--EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLL 190 (406)
T ss_pred CCEEEEcCCcceeeeeCCCccCchhhee--eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEe
Confidence 3444444444444444444444433322 233456789999999999999999999999998 9999999999999999
Q ss_pred EcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chH
Q 002169 335 HGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EEL 411 (957)
Q Consensus 335 ~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~ 411 (957)
|||||||||+||||+|++.++.|+.+.+++++.+|+||..+.+|++|+.|+.++||||||||||+++.+|.+.+ +..
T Consensus 191 YGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrE 270 (406)
T COG1222 191 YGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDRE 270 (406)
T ss_pred eCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986643 456
Q ss_pred HHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHH
Q 002169 412 SQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 491 (957)
Q Consensus 412 ~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~L 491 (957)
.+|..-+|++.||++...+++-||+|||+++.|||||+||||||+.|+||.|+.+.|.+||+.|.++|.+. .+.+++.|
T Consensus 271 VQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~l 349 (406)
T COG1222 271 VQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELL 349 (406)
T ss_pred HHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHH
Confidence 67888889999999999999999999999999999999999999999999999999999999999999988 88999999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 492 SMATHGFVGADLAALCNEAALVCLRRYS 519 (957)
Q Consensus 492 a~~t~g~~gaDi~~l~~~A~~~a~rr~~ 519 (957)
|..++|++||||+++|.+|.|.|+|..+
T Consensus 350 a~~~~g~sGAdlkaictEAGm~AiR~~R 377 (406)
T COG1222 350 ARLTEGFSGADLKAICTEAGMFAIRERR 377 (406)
T ss_pred HHhcCCCchHHHHHHHHHHhHHHHHhcc
Confidence 9999999999999999999999998643
No 9
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-46 Score=413.07 Aligned_cols=544 Identities=24% Similarity=0.343 Sum_probs=384.6
Q ss_pred cchhHHHHHHHHHHhhccCCcccCCCEEEEeecC-eeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceE
Q 002169 181 EDESAIKLLQTCAASWLYSRSLLCGNLVAVPMLS-EISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKV 259 (957)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v 259 (957)
..+...+.+-+..++...+.++.+|+.+...|-| ....+.|.++..-... .+..+........-..-++...|.|
T Consensus 111 sep~Dad~ma~qF~~~y~~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~~D~~----~~~~~~a~~~~~~~~~G~l~~nT~i 186 (744)
T KOG0741|consen 111 SEPFDADEMAKQFKRQYNSQAFSVGQQLVFEFNGNKLLGLKVKDIEAFDPG----ISEGESAVTKRQKIERGLLLGNTQI 186 (744)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCccEEEEEecCceEeeeEEEEEeeeccc----cccCCcccccccceeeeEeecCcEE
Confidence 3444557788888999999999999999999997 6788888766542110 0000000000001122345566666
Q ss_pred EEcCCcccccccccC-CCCCchhhhhhccccccccccc--ccCCcHHHHHHH-HHHHHhhhh-hhhhhhcCCCCCCeEEE
Q 002169 260 YLYPPLNAVSKSLRE-GTLPNAQIEFQNVQATVEQDIS--KLGGLSKEYAIL-KDIIISSSV-KSTLSSLGLRPTKGVLL 334 (957)
Q Consensus 260 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~i~Gl~~~~~~l-~e~i~~~~~-~~~~~~l~i~~~~~vLL 334 (957)
.+....+....-.-. ...+..+.. . .+..+|+ .|||++.+...| +........ ++..+++|+..-+|+||
T Consensus 187 ~F~k~~~s~lnL~~~~~~k~~~n~i---i--~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLL 261 (744)
T KOG0741|consen 187 VFEKAENSSLNLIGKSKTKPASNSI---I--NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILL 261 (744)
T ss_pred EEEeccCcceEeeccccccchhccc---c--CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEE
Confidence 554433221110000 001111110 1 1122233 489999888776 344333333 37778999999999999
Q ss_pred EcCCCChHHHHHHHHHHHcCC-cEEEEecccccccccchhHHHHHHHHHHHhcc--------CCeEEEEcCccccccCCc
Q 002169 335 HGPPGTGKTSLARLCAHDSGV-NLFTVNGPEVVSQNYGESEQALHEVFDSASQS--------APAVVFIDELDAIAPARK 405 (957)
Q Consensus 335 ~GppGtGKTtLaralA~~l~~-~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~--------~p~IL~IDEiD~l~~~~~ 405 (957)
|||||||||.+||-+...+++ +--.|||+++.++|+|++|.++|.+|..|... .-.||++||||++|.+|+
T Consensus 262 yGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRG 341 (744)
T KOG0741|consen 262 YGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRG 341 (744)
T ss_pred ECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcC
Confidence 999999999999999999976 34679999999999999999999999987632 235999999999999987
Q ss_pred CCC--chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCC---
Q 002169 406 DGG--EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGME--- 480 (957)
Q Consensus 406 ~~~--~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~--- 480 (957)
+.. ......+++|||.-||++.+-.++.||+.||+.|.||+||+|||||...++|..|++..|.+|++.|+.+|.
T Consensus 342 S~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~ 421 (744)
T KOG0741|consen 342 SMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENN 421 (744)
T ss_pred CCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcC
Confidence 643 467889999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred CCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccc
Q 002169 481 HSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRD 560 (957)
Q Consensus 481 ~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (957)
.--+++++++||..|..|+|++|+.+++.|...|+.|........
T Consensus 422 ~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~----------------------------------- 466 (744)
T KOG0741|consen 422 KLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKV----------------------------------- 466 (744)
T ss_pred CCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcce-----------------------------------
Confidence 223788999999999999999999999999999999875522000
Q ss_pred cccCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhh-hHH--
Q 002169 561 CLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMR-EVI-- 637 (957)
Q Consensus 561 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~-~~~-- 637 (957)
....+..+.++++++||..|+..++|..-. +..
T Consensus 467 --------------------------------------------~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~ 502 (744)
T KOG0741|consen 467 --------------------------------------------EVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLE 502 (744)
T ss_pred --------------------------------------------ecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHH
Confidence 011234466899999999999999998521 111
Q ss_pred --hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Q 002169 638 --LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 715 (957)
Q Consensus 638 --~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~ 715 (957)
+.---+.|..-+ -+.+.+. ....+..+.-...+-..+||.||||+|||+||--+|..++.||+.+-.++
T Consensus 503 ~~~~~Gmi~~g~~v-----~~il~~G----~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe 573 (744)
T KOG0741|consen 503 RFVMNGMINWGPPV-----TRILDDG----KLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPE 573 (744)
T ss_pred HHHhCCceeecccH-----HHHHhhH----HHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChH
Confidence 112224454321 1111111 11111122223445566999999999999999999999999999876554
Q ss_pred -cccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCc-EEEEEecCC
Q 002169 716 -LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN-VTVIAATNR 793 (957)
Q Consensus 716 -l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~-v~VI~aTN~ 793 (957)
+.+..-...-..++.+|+.|.+..-+||++|+|++|.+.- .-+..+++.++.+|+..+....+.++ .+|++||.+
T Consensus 574 ~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v---pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~ 650 (744)
T KOG0741|consen 574 DMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV---PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSR 650 (744)
T ss_pred HccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc---ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccH
Confidence 3332222234567999999999999999999999998764 23456788888899999988766654 555566665
Q ss_pred CCCCC-hhhhCCCCcceecccCCCCH-HHHHHHHH
Q 002169 794 PDKID-PALLRPGRFDRLLYVGPPNE-TDREEIFR 826 (957)
Q Consensus 794 ~~~id-~aLlr~gRfd~~i~~~~P~~-~er~~Il~ 826 (957)
.+.+. -.++. -|+..+.+|..+. ++..+++.
T Consensus 651 ~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 651 REVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred HHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 54432 23444 7888999987766 44555544
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-46 Score=419.34 Aligned_cols=297 Identities=39% Similarity=0.660 Sum_probs=271.2
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
.++++|.+|+|++....+|.+.+.. ++||+.|..+|+.|++|+||+||||||||+||+|||++++.||+.|+++++++.
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 3578999999999999999999988 899999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccC----CcEEEEEecCCCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR----VNVTVIAATNRPD 795 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~----~~v~VI~aTN~~~ 795 (957)
+.|++++++|++|+.|+..+|||+||||||++.+.|... +-....|++.|||+.||++... ..|+||+|||+|+
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a--qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA--QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH--HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999998653 4467789999999999998543 5799999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC---
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD--- 872 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~--- 872 (957)
.+||||+|+||||+.|.+..|+..+|.+||+..++++.+..++++..||..|.||.|+|+.++|.+|+..|+++.++
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987431
Q ss_pred ---------------------------------------------------------CCCCCHHHHHHHHHhhCCC----
Q 002169 873 ---------------------------------------------------------ASRITMQHLKTAIRHVQPS---- 891 (957)
Q Consensus 873 ---------------------------------------------------------~~~It~~d~~~al~~~~p~---- 891 (957)
...|+.+||++|+..++|+
T Consensus 421 ~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakRE 500 (802)
T KOG0733|consen 421 SPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKRE 500 (802)
T ss_pred CccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcc
Confidence 1136789999999999998
Q ss_pred -----------chHHHHHHHHHHHHHhcCchhhhhcccccccchhhhhhhhhccCCceEEEeecccCCccc
Q 002169 892 -----------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCRFPAGLSQS 951 (957)
Q Consensus 892 -----------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~L~~~~k~~~~fl~~~~~~~g~~ 951 (957)
++..++.++..|+..+..+......|..+......|.+|| ||+|-|||
T Consensus 501 GF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~------------GPPGCGKT 559 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLC------------GPPGCGKT 559 (802)
T ss_pred cceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEe------------CCCCccHH
Confidence 5678999999999999999988888777666656665555 78888886
No 11
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-46 Score=399.21 Aligned_cols=266 Identities=44% Similarity=0.708 Sum_probs=247.4
Q ss_pred hhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 634 REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 634 ~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
+.++.+.|+++|+||.|+.++|+.|+|++..|+..|+.|+.+ .+|-+|+|++||||||||+||||+|.+++..|+.|+.
T Consensus 200 rdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSs 278 (491)
T KOG0738|consen 200 RDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSS 278 (491)
T ss_pred HHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEech
Confidence 456677899999999999999999999999999999999974 6788999999999999999999999999999999999
Q ss_pred CCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccC-Cc---EEEEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR-VN---VTVIA 789 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~-~~---v~VI~ 789 (957)
+.+.++|.|++++.+|.+|+.|+..+|++|||||||+|+..|+.. +..++++|+.++||.+|||+... .+ |+|++
T Consensus 279 stltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s-~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 279 STLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS-SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc-cchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 999999999999999999999999999999999999999999776 45688999999999999998543 23 89999
Q ss_pred ecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 002169 790 ATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 790 aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
|||.||.||+||+| ||.+.||||+|+.+.|..++++.++..+..++++++.+|+.++||||+||.++|++|.++++++
T Consensus 358 ATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 358 ATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred ccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hcC---------------CCCCCHHHHHHHHHhhCCC----chHHHHHHHHHH
Q 002169 870 NLD---------------ASRITMQHLKTAIRHVQPS----EIHSYKELSAKF 903 (957)
Q Consensus 870 ~~~---------------~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~ 903 (957)
.+. ...|+..||++|+.+++|+ .++.|++|...|
T Consensus 436 ~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~ef 488 (491)
T KOG0738|consen 436 KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEF 488 (491)
T ss_pred HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHh
Confidence 541 2468999999999999998 667888887766
No 12
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-45 Score=416.91 Aligned_cols=229 Identities=44% Similarity=0.697 Sum_probs=221.0
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
+.++.+|++|||++++|..|++.|.+|+.+ +.|.++|+.|++|||||||||||||++||++|++.+.+|+.|.|+++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 456789999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhh
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a 447 (957)
+|+|++|+.++++|+.|++..|||||+||||+++..|+...+....|++++||++||++....+|+||++||+|+.||+|
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 99999999999999999999999999999999999998666788999999999999999999999999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+.||||||+.|+||+|+.+.|.+||+.++++++.. ++.+++.||+.|+||+|+||..+|++|+..|+++.
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~-~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~ 656 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS-EDVDLEELAQATEGYSGAEIVAVCQEAALLALRES 656 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC-ccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988 66899999999999999999999999999999864
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.8e-41 Score=393.83 Aligned_cols=382 Identities=25% Similarity=0.385 Sum_probs=298.7
Q ss_pred CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHH
Q 002169 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQ 467 (957)
Q Consensus 388 ~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~ 467 (957)
.|.|+++.+++.++.. . .+...|.++...+....+.+||.+.+ -.+++.|.+ +-..++++.|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~------~---~~~r~l~~l~~~~~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLND------I---SISRKLRNLSRILKTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcc------h---HHHHHHHHHHHHHHhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHH
Confidence 3789999999998721 1 12233333333333344555555542 457777775 44568999999999
Q ss_pred HHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCCcccccc
Q 002169 468 RLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQD 547 (957)
Q Consensus 468 r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (957)
+.++++.+.......+++..++.+++.+.|++-.+++.++..+.. +... .+.
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~----~~~~-~~~----------------------- 198 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA----TYKT-IDE----------------------- 198 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcCC-CCh-----------------------
Confidence 999999888777778899999999999999999999988765321 1000 000
Q ss_pred ccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHh
Q 002169 548 SDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMK 627 (957)
Q Consensus 548 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~ 627 (957)
+. +.. -+......
T Consensus 199 -------------------------------------------------------------~~---~~~---i~~~k~q~ 211 (489)
T CHL00195 199 -------------------------------------------------------------NS---IPL---ILEEKKQI 211 (489)
T ss_pred -------------------------------------------------------------hh---HHH---HHHHHHHH
Confidence 00 000 00000001
Q ss_pred cCchhhhhHHhh--cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC
Q 002169 628 VRPSAMREVILE--VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG 705 (957)
Q Consensus 628 ~~ps~~~~~~~e--~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~ 705 (957)
+... ...+ .+.++|++|+|++.+|+.+.+.... ......+.|+++++|+|||||||||||++||++|++++
T Consensus 212 ~~~~----~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~ 284 (489)
T CHL00195 212 ISQT----EILEFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ 284 (489)
T ss_pred Hhhh----ccccccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 1111 1122 2578899999999999988875432 23445678999999999999999999999999999999
Q ss_pred CcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcE
Q 002169 706 LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNV 785 (957)
Q Consensus 706 ~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v 785 (957)
.+|+.++++.++++|+|+++..++.+|..|+..+||||||||||.++..+...+ ..+...+++.+++..|+. ...++
T Consensus 285 ~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~-d~~~~~rvl~~lL~~l~~--~~~~V 361 (489)
T CHL00195 285 LPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG-DSGTTNRVLATFITWLSE--KKSPV 361 (489)
T ss_pred CCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC-CchHHHHHHHHHHHHHhc--CCCce
Confidence 999999999999999999999999999999999999999999999887544332 235678999999999985 35589
Q ss_pred EEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC--CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 002169 786 TVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS--SDVNIRELACLSEGCTGADISLICREAA 863 (957)
Q Consensus 786 ~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~--~~~~l~~la~~t~g~sg~dl~~l~~eA~ 863 (957)
+||+|||+++.+|++++|+||||+.|+++.|+.++|.+||+.++.+.... .+.++..+|..|+||||+||+++|++|+
T Consensus 362 ~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~ 441 (489)
T CHL00195 362 FVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAM 441 (489)
T ss_pred EEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999886533 4788999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 864 ISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 864 ~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
..|..+. ..++.+||..|++++.|.
T Consensus 442 ~~A~~~~---~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 442 YIAFYEK---REFTTDDILLALKQFIPL 466 (489)
T ss_pred HHHHHcC---CCcCHHHHHHHHHhcCCC
Confidence 9998764 569999999999999997
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-44 Score=393.53 Aligned_cols=245 Identities=42% Similarity=0.680 Sum_probs=233.1
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
..+++|+|+-|.+++|++|.|.+++ ++.|+.|.++|-+.|+||||+||||||||+||||+|+|.+.||+...++++-..
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 4588999999999999999999987 799999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
|||...+.+|.+|+.|++.+||||||||||++...|..... ...+..++|||.+|||+.++.+++||+|||.|+.+|+
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~--~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ--HYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH--HHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 99999999999999999999999999999999988865432 3788999999999999999999999999999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ 879 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~ 879 (957)
||.||||||+.|.+|.||...|.+||+.|+.++++..++|+.-+|+-|.||+|+||+++++.|++.|.... ...|++.
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg--a~~VtM~ 532 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG--AEMVTMK 532 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC--cccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876 6789999
Q ss_pred HHHHHHHhhC
Q 002169 880 HLKTAIRHVQ 889 (957)
Q Consensus 880 d~~~al~~~~ 889 (957)
|++.|-.++.
T Consensus 533 ~LE~akDrIl 542 (752)
T KOG0734|consen 533 HLEFAKDRIL 542 (752)
T ss_pred HHhhhhhhee
Confidence 9999987754
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-43 Score=358.23 Aligned_cols=254 Identities=41% Similarity=0.712 Sum_probs=239.5
Q ss_pred HHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Q 002169 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 715 (957)
Q Consensus 636 ~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~ 715 (957)
.+..+|+.+|+-++|++..+++++|.++.|.+||++|+.+|+..|+|+|||||||||||++|+|+|....+.||++++++
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgse 216 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSE 216 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 716 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
+..+|+|+..+-+|++|-.|+..+|+|||.||||++...|...+.+ .+.-.|.+-+||+.+|+++...++-||+|||+.
T Consensus 217 lvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnri 296 (404)
T KOG0728|consen 217 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRI 296 (404)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccc
Confidence 9999999999999999999999999999999999999888655433 344567778899999999999999999999999
Q ss_pred CCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCC
Q 002169 795 DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 874 (957)
Q Consensus 795 ~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~ 874 (957)
+.+||||+||||+|+.|+||+|+.+.|.+|+++|.+++.+...+++..+|+...|.||+++..+|.+|++.|+++. ..
T Consensus 297 dild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer--rv 374 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER--RV 374 (404)
T ss_pred ccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh--hc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 77
Q ss_pred CCCHHHHHHHHHhhCCC
Q 002169 875 RITMQHLKTAIRHVQPS 891 (957)
Q Consensus 875 ~It~~d~~~al~~~~p~ 891 (957)
.+|.+||+-|+.++...
T Consensus 375 hvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 375 HVTQEDFEMAVAKVMQK 391 (404)
T ss_pred cccHHHHHHHHHHHHhc
Confidence 89999999999887654
No 16
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-43 Score=357.33 Aligned_cols=251 Identities=40% Similarity=0.692 Sum_probs=235.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
+.|.+++.||+|++-.|++++|+++.|+.|.++++++|+.||+|+|+|||||||||+||||+|+.....||++.++++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
+|.|+..+.+|.+|..|+.++|+||||||+|+++..|-....+ ...-.|++-+||+.|||+....+|-||+|||+.+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 9999999999999999999999999999999999888554322 233457778899999999999999999999999999
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
||||+||||+|+.|+||+|+..+++-+|.....++.+.+++|++.+..+.+..||+||..+|++|++.|.+++ .-.|.
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n--ryvvl 385 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN--RYVVL 385 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc--ceeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 66789
Q ss_pred HHHHHHHHHhhCCC
Q 002169 878 MQHLKTAIRHVQPS 891 (957)
Q Consensus 878 ~~d~~~al~~~~p~ 891 (957)
..||+++.+.....
T Consensus 386 ~kd~e~ay~~~vk~ 399 (408)
T KOG0727|consen 386 QKDFEKAYKTVVKK 399 (408)
T ss_pred HHHHHHHHHhhcCC
Confidence 99999998875543
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-43 Score=361.25 Aligned_cols=249 Identities=40% Similarity=0.708 Sum_probs=232.9
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
..|..+|.||+|++..+++|+|.++.|+.||+.+..+|+.||+|++|||+||||||+||||+|+...+.|+++-+++++.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCC-cchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGV-SVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~-~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
+|.|+..+-+|++|..|...+|+|+||||||++...|-...+++ ..-.|.+-+||+.+|++..+++|-||+|||+.+.+
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999998885543332 22345566788899999999999999999999999
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
||||+||||+|+.|.|+.||...+++||.+|..++.+..+++++.+...-+.+||+||.++|.+|++.|+++. ...++
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer--Rm~vt 415 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER--RMKVT 415 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH--Hhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 77899
Q ss_pred HHHHHHHHHhhC
Q 002169 878 MQHLKTAIRHVQ 889 (957)
Q Consensus 878 ~~d~~~al~~~~ 889 (957)
++||..|.+++.
T Consensus 416 ~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 416 MEDFKKAKEKVL 427 (440)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 18
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-41 Score=390.58 Aligned_cols=235 Identities=36% Similarity=0.601 Sum_probs=218.7
Q ss_pred ccccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 287 VQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 287 ~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
.++.+.+.|+||||++++|..|.+-|.+|+.|..+...|+++..|||||||||||||.+|||+|.++...|+.|.|++++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 35678899999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC--chHHHHHHHHHHHHhhccc--cCCCeEEEEecCCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG--EELSQRMVATLLNLMDGVC--RTDGVLVIAATNRPD 442 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~--~~~~~~i~~~Ll~~ld~l~--~~~~v~vI~ttN~~~ 442 (957)
++|+|++|+++|++|++|+...|||||+||+|+++|+|+..+ +.+..|++.||+.+||++. ....++||++|||||
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 999999999999999999999999999999999999997655 5688999999999999996 567899999999999
Q ss_pred CchhhhhCCCCcceeeeecCC-CHHHHHHHHHHHHcCCCCCCChHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 443 SIEPALRRPGRLDREIEIAVP-SPAQRLEILHALLSGMEHSLLDSEVEYLSMAT-HGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 443 ~ld~al~r~gRfd~~I~i~~P-~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t-~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
.|||+|.||||||+-++++++ +.+.+..||+...+++.+. .++++..+|+.+ ..|+|||+.++|..|.+.|++|...
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987 5567789999999999988 888999999985 6799999999999999999999765
Q ss_pred cc
Q 002169 521 IQ 522 (957)
Q Consensus 521 ~~ 522 (957)
..
T Consensus 902 ~i 903 (953)
T KOG0736|consen 902 DI 903 (953)
T ss_pred Hh
Confidence 33
No 19
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-42 Score=351.80 Aligned_cols=260 Identities=42% Similarity=0.691 Sum_probs=238.9
Q ss_pred cCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc
Q 002169 628 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN 707 (957)
Q Consensus 628 ~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~ 707 (957)
+.|+-.-..+.|.|+++++|++|-++.++.++|.++.|+.||+.|-.+|+.||+|+|+|||||||||++|+|+|+..+..
T Consensus 159 idpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 159 IDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred CCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 44444333456789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC-CCcchHHHHHHHHHHHhccccCCcEE
Q 002169 708 FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 708 ~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
||++-+++++.+|+|+..+-+|++|+.|+....|||||||||++.+.|-..+. +...-.|.+-+|+++||++..++++-
T Consensus 239 firvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnik 318 (435)
T KOG0729|consen 239 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 318 (435)
T ss_pred EEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeE
Confidence 99999999999999999999999999999999999999999999988865532 22334566677888899999999999
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++|||+|+.+||||+||||+|+.++|.+|+.+.|.+||++|.+.+.+..++.++-+|+.+..-+|++|+.+|.+|++.|
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfa 398 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 398 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhC
Q 002169 867 IEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~~ 889 (957)
++.. .+..|..||.+|+.++.
T Consensus 399 irar--rk~atekdfl~av~kvv 419 (435)
T KOG0729|consen 399 IRAR--RKVATEKDFLDAVNKVV 419 (435)
T ss_pred HHHH--hhhhhHHHHHHHHHHHH
Confidence 9876 67789999999998764
No 20
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-41 Score=346.78 Aligned_cols=251 Identities=42% Similarity=0.695 Sum_probs=235.2
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF 717 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~ 717 (957)
-+.|...|+||+|++..++++.+++..|+.|++.|+++|++||+|+|+|||||||||++|||.|...+..|..+-++.++
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCC-CCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 718 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 718 ~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~-~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
..|+|...+-+|..|+.|+..+|+||||||+|++...|.... .+...-.|.+-+||+.|||+.+..++-||+|||+.+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 999999999999999999999999999999999988875543 2233345667788999999999999999999999999
Q ss_pred CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002169 797 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 876 (957)
Q Consensus 797 id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~I 876 (957)
+||||+|.||+|+.|+||.|+.+.|.+|+++|.+++....|+++++||+-|++|+|++..++|-+|++.|+++. ...|
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~--atev 400 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG--ATEV 400 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc--cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986 7789
Q ss_pred CHHHHHHHHHhhCC
Q 002169 877 TMQHLKTAIRHVQP 890 (957)
Q Consensus 877 t~~d~~~al~~~~p 890 (957)
+.+||.+.+..++.
T Consensus 401 ~heDfmegI~eVqa 414 (424)
T KOG0652|consen 401 THEDFMEGILEVQA 414 (424)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999887764
No 21
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-41 Score=343.90 Aligned_cols=267 Identities=34% Similarity=0.534 Sum_probs=236.5
Q ss_pred cCCceEEEcCCcccccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeE
Q 002169 254 NHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGV 332 (957)
Q Consensus 254 ~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~v 332 (957)
.|.+.+.++..+|.....+++...+...+. .....+..+|.++||++-+|+.+++.+++|+.+ +.++..|+.||+||
T Consensus 115 kps~svalhrhsnalvdvlppeadssi~ml--~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgv 192 (408)
T KOG0727|consen 115 KPSASVALHRHSNALVDVLPPEADSSISML--GPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGV 192 (408)
T ss_pred CCccchhhhhcccceeeccCCccccccccc--CCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcce
Confidence 345666666666655555554444333222 223446678999999999999999999999998 88899999999999
Q ss_pred EEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---c
Q 002169 333 LLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---E 409 (957)
Q Consensus 333 LL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~ 409 (957)
|||||||||||+|++++|+...+.|+.+.|++++.+|.|+....++.+|..|+.+.|+||||||+|+++.+|-+.+ +
T Consensus 193 llygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgad 272 (408)
T KOG0727|consen 193 LLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGAD 272 (408)
T ss_pred EEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886654 4
Q ss_pred hHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHH
Q 002169 410 ELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVE 489 (957)
Q Consensus 410 ~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~ 489 (957)
...+|++-+|++.||++....++-||++||+.+.+||++.||||+|+.|+||.|+..+++-+|..++.++.+. ++.+++
T Consensus 273 revqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~vdle 351 (408)
T KOG0727|consen 273 REVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVDLE 351 (408)
T ss_pred HHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-cccCHH
Confidence 5667889999999999999999999999999999999999999999999999999999999999999999988 889999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccc
Q 002169 490 YLSMATHGFVGADLAALCNEAALVCLRRYSKIQT 523 (957)
Q Consensus 490 ~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~ 523 (957)
.+..+.+..+|+||.++|++|.|.|+|..+....
T Consensus 352 ~~v~rpdkis~adi~aicqeagm~avr~nryvvl 385 (408)
T KOG0727|consen 352 DLVARPDKISGADINAICQEAGMLAVRENRYVVL 385 (408)
T ss_pred HHhcCccccchhhHHHHHHHHhHHHHHhcceeee
Confidence 9999999999999999999999999998665443
No 22
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-42 Score=354.65 Aligned_cols=266 Identities=36% Similarity=0.659 Sum_probs=240.1
Q ss_pred hhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEe
Q 002169 633 MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVK 712 (957)
Q Consensus 633 ~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~ 712 (957)
...++.|-|++.|+||.|++.+|+.|+|++..|.+.|++|.. +..|-+|+||||||||||+.||||+|.+.+..|++|+
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS 198 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS 198 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee
Confidence 345678999999999999999999999999999999999986 6778899999999999999999999999999999999
Q ss_pred CCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-cCCcEEEEEec
Q 002169 713 GPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAAT 791 (957)
Q Consensus 713 ~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-~~~~v~VI~aT 791 (957)
.++|+++|+|++++-++.+|+.|+.+.|+||||||||+++..|... ...+.+|+..++|.+|+++. ...+++|++||
T Consensus 199 SSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en--EseasRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 199 SSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN--ESEASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred hHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC--chHHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 9999999999999999999999999999999999999999887544 34688999999999999984 45689999999
Q ss_pred CCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHh
Q 002169 792 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 792 N~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
|-|+.+|.|++| ||++.||+|+|+...|..+|+.++...+.. .+.|+.+|++.|+||||+||.-+++.|.+.-+++.
T Consensus 277 NiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkv 354 (439)
T KOG0739|consen 277 NIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKV 354 (439)
T ss_pred CCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHh
Confidence 999999999999 999999999999999999999999887754 45789999999999999999999999999877752
Q ss_pred c--------------------------------------------CCCCCCHHHHHHHHHhhCCC----chHHHHHHHHH
Q 002169 871 L--------------------------------------------DASRITMQHLKTAIRHVQPS----EIHSYKELSAK 902 (957)
Q Consensus 871 ~--------------------------------------------~~~~It~~d~~~al~~~~p~----~~~~y~~~~~~ 902 (957)
. -...||+.||..++.+.+|+ ++...+++.+.
T Consensus 355 qsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~d 434 (439)
T KOG0739|consen 355 QSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTED 434 (439)
T ss_pred hhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHh
Confidence 1 13468999999999999998 55566666655
Q ss_pred H
Q 002169 903 F 903 (957)
Q Consensus 903 ~ 903 (957)
|
T Consensus 435 F 435 (439)
T KOG0739|consen 435 F 435 (439)
T ss_pred h
Confidence 5
No 23
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-40 Score=391.78 Aligned_cols=248 Identities=44% Similarity=0.754 Sum_probs=233.2
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
..++|.|+.|.+++|++|+|.+.+ +++|+.|.++|.+.|+|+||+||||||||+||||+|+|.+.||+.+++++++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 468999999999999999999986 8999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCC--CCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 721 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK--ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~--~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
+|.....+|.+|..|+.++|||+|+||||++...|+. ...++...+..++|||.+||+.....+|+|+++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9999999999999999999999999999999998852 23445667788999999999998888999999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
+||+||||||+.|+++.|+...|.+|++.|+++..+. +++++..+|.+|.||+|+||.++|++|++.|.++. ...|+
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~--~~~i~ 542 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG--LREIG 542 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc--cCccc
Confidence 9999999999999999999999999999999999985 77889999999999999999999999999999986 67899
Q ss_pred HHHHHHHHHhhCCC
Q 002169 878 MQHLKTAIRHVQPS 891 (957)
Q Consensus 878 ~~d~~~al~~~~p~ 891 (957)
..||..|++++.-.
T Consensus 543 ~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 543 TKDLEYAIERVIAG 556 (774)
T ss_pred hhhHHHHHHHHhcc
Confidence 99999999976655
No 24
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-40 Score=352.96 Aligned_cols=231 Identities=35% Similarity=0.556 Sum_probs=215.1
Q ss_pred ccccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 287 VQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 287 ~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
...++...|++|.|+.+.|+.|+|.|.+|+....|.+-...|.++||++||||||||+||+|+|.+++..||.|+.+.+.
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 45566788999999999999999999999888777777788999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC-chHHHHHHHHHHHHhhccccC-CC---eEEEEecCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG-EELSQRMVATLLNLMDGVCRT-DG---VLVIAATNRP 441 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~-~~~~~~i~~~Ll~~ld~l~~~-~~---v~vI~ttN~~ 441 (957)
++|.|++|+.+|-+|+.|+.++|++|||||||+|+.+|+..+ .+.++|+.++||..||++... .+ |+|+++||-|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 999999999999999999999999999999999999987655 578899999999999998432 33 8999999999
Q ss_pred CCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 442 DSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 442 ~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
++||+|++| ||.+.|+||+|+.+.|..+++..++..... ++..++.++..++||+|+||..+|++|.|.++||...
T Consensus 363 WdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 363 WDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELD-DPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred cchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCC-CCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999988776 7888999999999999999999999999999999765
No 25
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=4.1e-39 Score=367.14 Aligned_cols=253 Identities=39% Similarity=0.665 Sum_probs=234.3
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
+.+.|.++|+||+|++.+|+++++.+.+|+.+++.|+.+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
..+|+|++++.++.+|..|+..+|+||||||+|.++..|.....+ .....+++.+++..|+++....++.||+|||+++
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 999999999999999999999999999999999998776433222 2334578889999999987778999999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.+|++++||||||+.|+|++|+.++|..||+.++.++++..++++.+++..|+||+|+||.++|++|++.|+++. ...
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~--~~~ 373 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN--RYV 373 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--CCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999886 568
Q ss_pred CCHHHHHHHHHhhCCC
Q 002169 876 ITMQHLKTAIRHVQPS 891 (957)
Q Consensus 876 It~~d~~~al~~~~p~ 891 (957)
|+.+||.+|+.++...
T Consensus 374 i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 374 ILPKDFEKGYKTVVRK 389 (398)
T ss_pred cCHHHHHHHHHHHHhc
Confidence 9999999999987543
No 26
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-39 Score=328.59 Aligned_cols=264 Identities=34% Similarity=0.547 Sum_probs=232.4
Q ss_pred EEcCCceEEEcCCcccccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCC
Q 002169 252 VINHETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTK 330 (957)
Q Consensus 252 ~i~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~ 330 (957)
-+.+.+.+.+...+....+.++....|-..+. -..+++..+|+-+||++.+++.|++.|++|..+ +.|+.+|+..|+
T Consensus 105 ~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLM--mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPK 182 (404)
T KOG0728|consen 105 DVTPSSRVALRNDSYTLHKILPNKVDPLVSLM--MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 182 (404)
T ss_pred hcCCcceEEEeccchHHHHhcccccchhhHHH--hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCc
Confidence 35566777777666655555544444332221 234556778999999999999999999999988 889999999999
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC--
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG-- 408 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~-- 408 (957)
|+|||||||||||.||+++|+...+.|+.++|++++.+|+|+....++++|-.|+.++|+|||+||||++...|.+++
T Consensus 183 GvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~g 262 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSG 262 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998875533
Q ss_pred -chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHH
Q 002169 409 -EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSE 487 (957)
Q Consensus 409 -~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~ 487 (957)
+...+|..-+|++.+|++....++-||++||+.+-+|||+.||||+|+.|+||.|+++.|.+|++.+.+++++. ...+
T Consensus 263 gdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~ 341 (404)
T KOG0728|consen 263 GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGIN 341 (404)
T ss_pred ccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccC
Confidence 44566777788899999999999999999999999999999999999999999999999999999999998876 6677
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 488 VEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 488 l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+..+|+...|-+|++++.+|.+|.|.|+|..
T Consensus 342 l~kiaekm~gasgaevk~vcteagm~alrer 372 (404)
T KOG0728|consen 342 LRKIAEKMPGASGAEVKGVCTEAGMYALRER 372 (404)
T ss_pred HHHHHHhCCCCccchhhhhhhhhhHHHHHHh
Confidence 9999999999999999999999999999854
No 27
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=332.98 Aligned_cols=244 Identities=33% Similarity=0.572 Sum_probs=221.1
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
..++++++|++||+++|+.++-.+++ +.+|+.|.+| .|+++|||||||||||++|||+|++.+.|++.+++.++++
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 45789999999999999998877765 7888887664 6899999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
.++|+..+.+++++++|++.+|||+||||+|+++-.|....-- +.-.+++|+||++||++.++.+|+.|+|||+|+.+|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelR-GDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELR-GDVSEIVNALLTELDGIKENEGVVTIAATNRPELLD 268 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhc-ccHHHHHHHHHHhccCcccCCceEEEeecCChhhcC
Confidence 9999999999999999999999999999999998766443222 234678999999999999999999999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHH-HHHHHHHHHHHHHhcCCCCCC
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADIS-LICREAAISAIEENLDASRIT 877 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~-~l~~eA~~~a~~~~~~~~~It 877 (957)
+|+++ ||...|+|.+|+.++|.+|++.+.+++|+.-+.++..++..|.|+||+||. .++..|...|+.+. ...|+
T Consensus 269 ~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed--~e~v~ 344 (368)
T COG1223 269 PAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED--REKVE 344 (368)
T ss_pred HHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc--hhhhh
Confidence 99999 999999999999999999999999999999999999999999999999996 56777888888886 67899
Q ss_pred HHHHHHHHHhhCCC
Q 002169 878 MQHLKTAIRHVQPS 891 (957)
Q Consensus 878 ~~d~~~al~~~~p~ 891 (957)
.+|++.|+++..+.
T Consensus 345 ~edie~al~k~r~~ 358 (368)
T COG1223 345 REDIEKALKKERKR 358 (368)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999975543
No 28
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=359.65 Aligned_cols=233 Identities=35% Similarity=0.557 Sum_probs=219.8
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
...+|+++.|+++.|++|.|+|++...+..|.++|-+-|+||||+||||||||+||||+|++.+.+|+...|+++-..++
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred cccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 45679999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhC
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRR 450 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r 450 (957)
|...+++|.+|+.|++.+||||||||||++..+|........+..++|||..||++.+..+++||++||.|+.+|+||.|
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~R 458 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTR 458 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcC
Confidence 99999999999999999999999999999999998776668889999999999999999999999999999999999999
Q ss_pred CCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcccccc
Q 002169 451 PGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTS 524 (957)
Q Consensus 451 ~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~ 524 (957)
|||||++|.+|.||...|.+||++|+.+..+. .+++...+|+-|.||+|+||+++++.|+..|..........
T Consensus 459 PGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM 531 (752)
T KOG0734|consen 459 PGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-EDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTM 531 (752)
T ss_pred CCccceeEecCCCCcccHHHHHHHHHhcCCcc-cCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccH
Confidence 99999999999999999999999999998877 78899999999999999999999999999987765554443
No 29
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-38 Score=381.37 Aligned_cols=387 Identities=32% Similarity=0.507 Sum_probs=305.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEeccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPE 364 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~ 364 (957)
...+|+++||++.++..|+|+|.+|+.+ +.|+++++.|++|||||||||||||+.|+++|..+ ...|+.-.+.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 3467999999999999999999999887 88999999999999999999999999999999877 34567788999
Q ss_pred ccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 365 VVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 365 l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
..++|+|+.+..++.+|+.|+...|+|||+||||.+++.|...++.....++.+|+.+||++..++.++||++||+++.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcccccc
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTS 524 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~ 524 (957)
|||+|||||||++++|++|+.+.|.+|+..+.++....+....+..+|+.+.||.|+||+++|.+|++.+++|-...+..
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~ 499 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS 499 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999886553332
Q ss_pred ccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcccCCCCCCCC
Q 002169 525 SDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFHNGVSDSSGG 604 (957)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (957)
...
T Consensus 500 s~~----------------------------------------------------------------------------- 502 (1080)
T KOG0732|consen 500 SSD----------------------------------------------------------------------------- 502 (1080)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 110
Q ss_pred CccccccccccccHHHHHHHHHhcCchhhhhHHhhcCCcc--------ccc-------cCChHHHHHHHHHHHhchhhcH
Q 002169 605 MFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVK--------WED-------VGGQREVKTQLMEAVEWPQKHQ 669 (957)
Q Consensus 605 ~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~--------~~d-------i~G~~~vk~~l~e~i~~~~~~~ 669 (957)
...-....+++..+||..|+.++.|+..|.......+.. +.+ +.-.......+.+...|..+..
T Consensus 503 -kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~ 581 (1080)
T KOG0732|consen 503 -KLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSF 581 (1080)
T ss_pred -cccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhh
Confidence 000111234577888888888888877664332221111 000 1111111122222222211111
Q ss_pred HHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-CCcEEEEeCCCccccc-ccchHHHHHHHHHHHHhCCCeEEEEeC
Q 002169 670 EAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-GLNFLAVKGPELFSKW-VGESEKAVRSLFAKARANAPSIIFFDE 747 (957)
Q Consensus 670 ~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-~~~~i~v~~~~l~~~~-vg~~~~~ir~~f~~A~~~~p~ILfiDE 747 (957)
+.+-.+.+--...+++-|..|.|-+.+.+||-+.+ +.+......+.++..- .+.....+..+|.+|+...||||||-.
T Consensus 582 e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~ 661 (1080)
T KOG0732|consen 582 ESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPN 661 (1080)
T ss_pred hcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccc
Confidence 11000111122348889999999999999997766 5666666666655543 455678889999999999999999999
Q ss_pred Cchhhhhc
Q 002169 748 IDGLAAIR 755 (957)
Q Consensus 748 id~l~~~r 755 (957)
+|.+....
T Consensus 662 ~d~w~~~~ 669 (1080)
T KOG0732|consen 662 VDEWARVI 669 (1080)
T ss_pred hhhhhhcC
Confidence 99876443
No 30
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-38 Score=368.21 Aligned_cols=247 Identities=43% Similarity=0.732 Sum_probs=234.0
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
...++|.|+.|.+++|+++.|.+.. ++.|..|..+|.+.|+|++|+||||||||+||||+|.+.+.||+.+++++++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 4679999999999999999999986 789999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
|+|.....+|.+|..|++++|||+||||||++...|+.. +++...-+..++|||.+||+...+.+|+||++||+|+-+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 999999999999999999999999999999999998655 3444455679999999999999888999999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITM 878 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~ 878 (957)
+||+||||||+.|.++.||...|.+|++.|.++.++..++++..+|+.|.||+|+|+.+++++|++.|.+++ ...|++
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n--~~~i~~ 380 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN--KKEITM 380 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--CeeEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 778999
Q ss_pred HHHHHHHHhhC
Q 002169 879 QHLKTAIRHVQ 889 (957)
Q Consensus 879 ~d~~~al~~~~ 889 (957)
.||.+|..++.
T Consensus 381 ~~i~ea~drv~ 391 (596)
T COG0465 381 RDIEEAIDRVI 391 (596)
T ss_pred cchHHHHHHHh
Confidence 99999999865
No 31
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.4e-38 Score=360.29 Aligned_cols=255 Identities=47% Similarity=0.779 Sum_probs=235.5
Q ss_pred hHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 635 ~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
..+.+.|.+.|++|+|++++++.+.+.+.+|+.+++.|+.+|+.+++|+|||||||||||++|+++|++++.+|+.+.++
T Consensus 120 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~ 199 (389)
T PRK03992 120 MEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 199 (389)
T ss_pred eeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
++..+|+|++++.++.+|..|+..+|+||||||+|.++..+.....+ .....+.+.+++.++++.....++.||+|||+
T Consensus 200 ~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~ 279 (389)
T PRK03992 200 ELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR 279 (389)
T ss_pred HHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999998776543322 12335667788888898877779999999999
Q ss_pred CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCC
Q 002169 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDA 873 (957)
Q Consensus 794 ~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~ 873 (957)
++.+|++++|||||++.|+|++|+.++|.+||+.+++++++..++++..+|..|+||+|+|++++|++|++.|+++. .
T Consensus 280 ~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~--~ 357 (389)
T PRK03992 280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD--R 357 (389)
T ss_pred hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC--C
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999885 6
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 002169 874 SRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 874 ~~It~~d~~~al~~~~p~ 891 (957)
..|+.+||.+|+.++++.
T Consensus 358 ~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 358 TEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred CCcCHHHHHHHHHHHhcc
Confidence 679999999999999876
No 32
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-39 Score=333.07 Aligned_cols=230 Identities=36% Similarity=0.609 Sum_probs=213.5
Q ss_pred cccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 288 QATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 288 ~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
.+.+..+|.+|||++.+++.|++.+++|+.| +.++..|+.||+||+|||+||||||.||+|+|+...+.|+.+-+++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 3445678999999999999999999999998 889999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
.+|.|+..+.+|++|+.|..++|+|+||||||++..+|-+.. +...+|..-+|++.+|++..++.+-||++||+++.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 999999999999999999999999999999999999885543 34455666678888899988999999999999999
Q ss_pred chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 444 ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+||||.||||+|+.|+|+.|+...+..||+.|..++.+. .++.++.+...-+.++|+||+++|.+|.+.|+|..
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~-~dVnle~li~~kddlSGAdIkAictEaGllAlRer 410 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA-EDVNLEELIMTKDDLSGADIKAICTEAGLLALRER 410 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchh-ccccHHHHhhcccccccccHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999887 77889999988999999999999999999999864
No 33
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=325.73 Aligned_cols=239 Identities=40% Similarity=0.639 Sum_probs=222.4
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
..+...|++|||++.+++.|.+.|.+|+.+ +.|.++|+.||+|+|+|||||||||.+||+.|.+.+..|+.+.++.++.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 345568999999999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
.|+|+..+.+|..|..|+..+|+||||||+|++..+|-+. ++...+|..-+|++.+|+++....+-||++||+.+-+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiL 323 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDIL 323 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccccc
Confidence 9999999999999999999999999999999999888554 3445667777788899999999999999999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcccccc
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTS 524 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~ 524 (957)
||++.|.||+|+.|+||.|+++.|..|++.|.+++... ++..++.||+.|++|+|+..+++|-+|.|.|+||...+..+
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~h 402 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTH 402 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccH
Confidence 99999999999999999999999999999999999887 88899999999999999999999999999999998877766
Q ss_pred cccc
Q 002169 525 SDVL 528 (957)
Q Consensus 525 ~~~~ 528 (957)
+++.
T Consensus 403 eDfm 406 (424)
T KOG0652|consen 403 EDFM 406 (424)
T ss_pred HHHH
Confidence 6554
No 34
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-38 Score=328.58 Aligned_cols=231 Identities=31% Similarity=0.544 Sum_probs=220.0
Q ss_pred cccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 288 QATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 288 ~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
...+.+.|+++.||+..|+.|++.|.+|.....|..-+..|.++|||||||||||+.||+++|.+.+..|+.|+.+++++
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 204 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH
Confidence 34566789999999999999999999998888887778889999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc-ccCCCeEEEEecCCCCCchh
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-CRTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l-~~~~~v~vI~ttN~~~~ld~ 446 (957)
+|.|++++.++.+|+.|+.++|+||||||||.++..|.++.++.++|+..+||-.|.++ ....++.|+++||-|+.||.
T Consensus 205 KWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDs 284 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDS 284 (439)
T ss_pred HHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 44578999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
|+|| ||++.|+||.|+...|..+|+.++...++.+++.++..|+..|+||+|+||.-+++.|.|..+|+.+.
T Consensus 285 AIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 285 AIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred HHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999 99999999999999999999999999999999999999999999999999999999999999998754
No 35
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-38 Score=355.61 Aligned_cols=230 Identities=38% Similarity=0.634 Sum_probs=219.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
..|++|||+.++++.|+++|++|-++ ..|.+..++.+.|||||||||||||.||-++|...+..|+.+.|+++.++|+|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 57899999999999999999999887 88899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCC
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRP 451 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~ 451 (957)
.+|+.+|.+|++|...+|||||+||+|+++|+|+........|++++|++.||+...-.+|.|+++|.+||.|||||+||
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRp 823 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRP 823 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCC
Confidence 99999999999999999999999999999999999888999999999999999999899999999999999999999999
Q ss_pred CCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccc
Q 002169 452 GRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQT 523 (957)
Q Consensus 452 gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~ 523 (957)
||+|+.++.+.|++.+|.+|++.+....... ++.+++.+|..|+||+|+||..++-.|-+.|++++....+
T Consensus 824 GRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 824 GRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED 894 (952)
T ss_pred CccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988877666 7899999999999999999999999999999988766444
No 36
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=336.03 Aligned_cols=229 Identities=40% Similarity=0.672 Sum_probs=214.2
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcC-CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIG-TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~-~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
.-.++|+||+|++++++++++.+..|++++++|..-+ .++++|||||||||||||++|||+|++.+.+||.|.++.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 3478999999999999999999999999999997433 678999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCc--EEEEEecCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN--VTVIAATNRPDK 796 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~--v~VI~aTN~~~~ 796 (957)
+|.|++++.++.+|..|...+||||||||+|+++..|+ ....++...+.++++..=||+....+ |+|++|||+|..
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~--s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR--STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFD 243 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc--cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCcc
Confidence 99999999999999999999999999999999999983 34457888889999999999976554 999999999999
Q ss_pred CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC
Q 002169 797 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD 872 (957)
Q Consensus 797 id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~ 872 (957)
+|.|++| |+.+.++|+.|+..+|.+|++..+++..+..++|+.++|..|+||||.||.++|+.|+...+++.+.
T Consensus 244 lDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 244 LDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred HHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999999887653
No 37
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=354.55 Aligned_cols=251 Identities=41% Similarity=0.696 Sum_probs=232.1
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF 717 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~ 717 (957)
.+.|.++|+||+|+++.++++.+++.+|+.+++.|+.+++.+++++|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC-CCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 718 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 718 ~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.+|+|+.+..++.+|..|+...|+||||||+|.++..+..... +.....+.+.+++..|+++....++.||+|||+++.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 9999999999999999999999999999999999877654322 222345667788999998877779999999999999
Q ss_pred CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002169 797 IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 876 (957)
Q Consensus 797 id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~I 876 (957)
+|++++||||||+.|+|++|+.++|.+||+.++.++.+..++++..++..++||+|+||+++|++|++.|+++. ...|
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~--r~~V 412 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER--RMKV 412 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc--CCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999886 6689
Q ss_pred CHHHHHHHHHhhCC
Q 002169 877 TMQHLKTAIRHVQP 890 (957)
Q Consensus 877 t~~d~~~al~~~~p 890 (957)
+.+||.+|+.++..
T Consensus 413 t~~D~~~A~~~v~~ 426 (438)
T PTZ00361 413 TQADFRKAKEKVLY 426 (438)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998753
No 38
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-38 Score=322.68 Aligned_cols=247 Identities=34% Similarity=0.576 Sum_probs=223.9
Q ss_pred cccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 288 QATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 288 ~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
+..+.++|.++||.+++++.|++.+++|+.+ +.|.++|+.||++||||||||||||..||++|+..++.|+.+-+++++
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 3456788999999999999999999999988 899999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
.+|+|+....++++|+.|+..+.||||+||+|++.+.|-+. +++..+|..-+|++.+|++..++++-|+++||+|+.
T Consensus 249 qkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 99999999999999999999999999999999999887543 345566777778888999999999999999999999
Q ss_pred chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccc
Q 002169 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQT 523 (957)
Q Consensus 444 ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~ 523 (957)
+||||.||||+|+.++|..|+.+.|..||+.|.+.+... .+.-++.+|..+..-+|++|+++|.+|.|.|+|..++...
T Consensus 329 ldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve-rdir~ellarlcpnstgaeirsvcteagmfairarrk~at 407 (435)
T KOG0729|consen 329 LDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVAT 407 (435)
T ss_pred cCHhhcCCcccccceeccCCcccccceeEEEeccccccc-cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhh
Confidence 999999999999999999999999999999999998876 6777899999999999999999999999999987766555
Q ss_pred cccccccccccc
Q 002169 524 SSDVLHSTGTLF 535 (957)
Q Consensus 524 ~~~~~~~~~~~~ 535 (957)
..+++.+..+++
T Consensus 408 ekdfl~av~kvv 419 (435)
T KOG0729|consen 408 EKDFLDAVNKVV 419 (435)
T ss_pred HHHHHHHHHHHH
Confidence 555554444444
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-37 Score=341.04 Aligned_cols=307 Identities=31% Similarity=0.478 Sum_probs=250.4
Q ss_pred hcCCccccc--cCChHHHH-HHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-cEEEEeCC
Q 002169 639 EVPKVKWED--VGGQREVK-TQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-NFLAVKGP 714 (957)
Q Consensus 639 e~p~v~~~d--i~G~~~vk-~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~-~~i~v~~~ 714 (957)
-.|+..|++ |+|++.-- ...+++...-.-.|+..+++|+..-+|+|||||||||||++||-|.+.++. +--.|+++
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 346667776 57876544 445566666666789999999999999999999999999999999999975 55679999
Q ss_pred CcccccccchHHHHHHHHHHHHhC--------CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 715 ELFSKWVGESEKAVRSLFAKARAN--------APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~--------~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
+++++|+|+++.++|.+|+.|... .--||+|||||+++..|++..++.++.+.++||||..|||+++-.+++
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNIL 371 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNIL 371 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEE
Confidence 999999999999999999998641 124999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC----CCCcccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP----CSSDVNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~----~~~~~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
||+.|||.+.||+||+|||||...+++.+||+..|.+|+++|..++. +..|+|+.+||..|..|||++|+.+++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997753 56899999999999999999999999999
Q ss_pred HHHHHHHhcC-------------CCCCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHhcCchhhhhcccccccchhhhhh
Q 002169 863 AISAIEENLD-------------ASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSN 929 (957)
Q Consensus 863 ~~~a~~~~~~-------------~~~It~~d~~~al~~~~p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~ 929 (957)
...|+.+.+. ...|+++||..|+..++|.-.-.-+.+.....+.++..-..... .-.-|..
T Consensus 452 ~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~------il~~G~l 525 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTR------ILDDGKL 525 (744)
T ss_pred HHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHH------HHhhHHH
Confidence 9999988652 33689999999999999982222233333333333222211111 0011222
Q ss_pred hhh-----ccCCceEEEeecccCCccc
Q 002169 930 MWT-----LIKSISLFLCRFPAGLSQS 951 (957)
Q Consensus 930 L~~-----~~k~~~~fl~~~~~~~g~~ 951 (957)
|-. ...+..|-|+.||.|+|||
T Consensus 526 lv~qvk~s~~s~lvSvLl~Gp~~sGKT 552 (744)
T KOG0741|consen 526 LVQQVKNSERSPLVSVLLEGPPGSGKT 552 (744)
T ss_pred HHHHhhccccCcceEEEEecCCCCChH
Confidence 322 2345568999999999998
No 40
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=5.2e-36 Score=307.19 Aligned_cols=288 Identities=28% Similarity=0.434 Sum_probs=239.3
Q ss_pred HHHHHHHHHHhhccCCcccCCCEEEEeecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEcCC
Q 002169 185 AIKLLQTCAASWLYSRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPP 264 (957)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~ 264 (957)
+.++.+..++.+..|-.+.+|+++-=.-.=.-..|.|.++.|. +..+++..|.+.+..+
T Consensus 49 n~~~F~~YArdQW~Ge~v~eg~ylFD~~~~pdyAfkvI~~~P~---------------------~~~i~~st~i~vl~~~ 107 (368)
T COG1223 49 NPEVFNIYARDQWLGEVVREGDYLFDTRMFPDYAFKVIRVVPS---------------------GGGIITSTTIFVLETP 107 (368)
T ss_pred CHHHHHHHHHHhhcceeeecCceEeecccccccceeEEEEeCC---------------------CCceecceEEEEecCc
Confidence 5678888999999999999999873322222467899999886 3456666555554332
Q ss_pred cccccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHH
Q 002169 265 LNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTS 344 (957)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTt 344 (957)
-. ... ......+++++.|.++.|...+=++++...++.|.+ -.|++||||||||||||+
T Consensus 108 ~~-~~~-----------------e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm 166 (368)
T COG1223 108 RE-EDR-----------------EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTM 166 (368)
T ss_pred ch-hhh-----------------hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcc---cCcceeEEECCCCccHHH
Confidence 11 100 112345789999999999999988888766676544 459999999999999999
Q ss_pred HHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC-chHHHHHHHHHHHHh
Q 002169 345 LARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG-EELSQRMVATLLNLM 423 (957)
Q Consensus 345 LaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~-~~~~~~i~~~Ll~~l 423 (957)
+|+++|++.+.+++.+++.++++.++|+....++++|+.|...+|||+||||+|+++-.|.-.. ......+++.||+.|
T Consensus 167 ~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTel 246 (368)
T COG1223 167 MAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTEL 246 (368)
T ss_pred HHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999987764322 223567899999999
Q ss_pred hccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHH
Q 002169 424 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 503 (957)
Q Consensus 424 d~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi 503 (957)
|++....+++.|++||+++.||+++|+ ||..+|+|..|+.++|.+|++.+++.+++.+ +..++.++..+.||+|+||
T Consensus 247 Dgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-~~~~~~~~~~t~g~SgRdi 323 (368)
T COG1223 247 DGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPV-DADLRYLAAKTKGMSGRDI 323 (368)
T ss_pred cCcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCcc-ccCHHHHHHHhCCCCchhH
Confidence 999999999999999999999999999 9999999999999999999999999999884 4559999999999999999
Q ss_pred HH-HHHHHHHHHHHH
Q 002169 504 AA-LCNEAALVCLRR 517 (957)
Q Consensus 504 ~~-l~~~A~~~a~rr 517 (957)
.. +++.|..+|+..
T Consensus 324 kekvlK~aLh~Ai~e 338 (368)
T COG1223 324 KEKVLKTALHRAIAE 338 (368)
T ss_pred HHHHHHHHHHHHHHh
Confidence 74 667777777653
No 41
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=1.1e-35 Score=351.82 Aligned_cols=251 Identities=43% Similarity=0.739 Sum_probs=230.2
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
..+.|.++|+||+|++++|+++.+.+.+ +++++.+..++..+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~ 124 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDF 124 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHH
Confidence 3456899999999999999999999887 789999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.+.|+|...+.++.+|+.|+..+||||||||||.+...++.. ........++++++|.+||++....+++||+|||+++
T Consensus 125 ~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~ 204 (495)
T TIGR01241 125 VEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPD 204 (495)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChh
Confidence 999999999999999999999999999999999998877542 1223345688999999999998888899999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.+|++++||||||+.|+++.|+.++|.+|++.++++.+...+.++..+|..+.||+++||+++|++|+..|.++. ...
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~--~~~ 282 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN--KTE 282 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--CCC
Confidence 999999999999999999999999999999999999888788899999999999999999999999999888765 567
Q ss_pred CCHHHHHHHHHhhCC
Q 002169 876 ITMQHLKTAIRHVQP 890 (957)
Q Consensus 876 It~~d~~~al~~~~p 890 (957)
|+.+||++|+.++..
T Consensus 283 i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 283 ITMNDIEEAIDRVIA 297 (495)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999998753
No 42
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=335.33 Aligned_cols=229 Identities=38% Similarity=0.613 Sum_probs=210.7
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
..+..+|++|||++.+++.|++.+++|+.+ +.|..+|+.+++++|||||||||||++|+++|++++.+++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 356678999999999999999999999887 7889999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
+|.|+.+..++.+|+.|....|+||||||+|.++.++.+.. +...++++.+|+..|+++....+++||++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999998774332 234567888899999998777889999999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
||+++|+||||++|+|+.|+.++|.+|++.++.++.+. .+.+++.++..++||+|+||.++|++|++.|+++.
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~ 370 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN 370 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999988766 67789999999999999999999999999998763
No 43
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-36 Score=351.60 Aligned_cols=237 Identities=38% Similarity=0.608 Sum_probs=220.5
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
...+.|.|+.|+++.|++|.|+|.+...++.|.++|+..|+|+||+||||||||+||+|+|++.+.+|+.+++++++..+
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 34478999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcC----CCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCch
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKD----GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~----~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld 445 (957)
.|....+++.+|..|+...|||+||||||++...|+. +++......++||+..||+....++++|+++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9999999999999999999999999999999998842 345566788999999999998888999999999999999
Q ss_pred hhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccc
Q 002169 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSS 525 (957)
Q Consensus 446 ~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~ 525 (957)
+|++||||||+.|.++.|+..+|.+|++.|+++.....++.++..+|.+|+||+|+||.++|++|+..|.|+........
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~ 544 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTK 544 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchh
Confidence 99999999999999999999999999999999998877888899999999999999999999999999999876655444
Q ss_pred c
Q 002169 526 D 526 (957)
Q Consensus 526 ~ 526 (957)
+
T Consensus 545 ~ 545 (774)
T KOG0731|consen 545 D 545 (774)
T ss_pred h
Confidence 3
No 44
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2.3e-34 Score=354.06 Aligned_cols=447 Identities=22% Similarity=0.313 Sum_probs=309.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~ 361 (957)
...++++.|.+++++.+.+++ ......+++|+||||||||++|+++|..+ +..++.++
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L------------~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVL------------CRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHH------------hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 346788999999998777663 22345689999999999999999999887 67889999
Q ss_pred ccccc--ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 362 GPEVV--SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 362 ~~~l~--~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
+..+. .+|.|+.+.+++.+|+.+....|+||||||+|.+.+.+...++.. ...+.|...+ .++.+.+|++||
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~--~~~~~L~~~l----~~g~i~~IgaTt 319 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSM--DASNLLKPAL----SSGKLRCIGSTT 319 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccH--HHHHHHHHHH----hCCCeEEEEecC
Confidence 88887 468899999999999999877899999999999987654322211 1223344443 357899999999
Q ss_pred CCC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCC----CCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 440 RPD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGM----EHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 440 ~~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~----~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
..+ +.|+++.| ||. .|.++.|+.+++.+|++.....+ ...+++..++.++..++.|.
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi----------- 385 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI----------- 385 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc-----------
Confidence 743 57999999 996 59999999999999999766542 23344444444443332221
Q ss_pred HHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHH
Q 002169 511 ALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEI 590 (957)
Q Consensus 511 ~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (957)
. .|++|+++++++|++++.........
T Consensus 386 ---------~------------------------------~r~~P~kai~lld~a~a~~~~~~~~~-------------- 412 (731)
T TIGR02639 386 ---------N------------------------------DRFLPDKAIDVIDEAGASFRLRPKAK-------------- 412 (731)
T ss_pred ---------c------------------------------cccCCHHHHHHHHHhhhhhhcCcccc--------------
Confidence 1 35688888998888777554321110
Q ss_pred HhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchh-------hhhHHhhcCCccccccCChHHHHHHHHHHHh
Q 002169 591 ADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSA-------MREVILEVPKVKWEDVGGQREVKTQLMEAVE 663 (957)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~-------~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~ 663 (957)
....++.+|+.........-. ..+........-...|+||+++++.+.+.+.
T Consensus 413 ---------------------~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~ 471 (731)
T TIGR02639 413 ---------------------KKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIK 471 (731)
T ss_pred ---------------------cccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHH
Confidence 011244444444433321110 0112222333345678999999999988876
Q ss_pred chhhcHHHHHhcCC----CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc------------cccchHHH
Q 002169 664 WPQKHQEAFKRIGT----RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK------------WVGESEKA 727 (957)
Q Consensus 664 ~~~~~~~~~~~l~~----~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~------------~vg~~~~~ 727 (957)
+. +.|+ +|...+||+||+|||||++|++||..++.+++.++++++... |+|..+
T Consensus 472 ~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~-- 541 (731)
T TIGR02639 472 RS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ-- 541 (731)
T ss_pred HH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccch--
Confidence 42 1222 233348999999999999999999999999999999886432 344322
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCC---
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPD--- 795 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~--- 795 (957)
...+.+.++....+||||||+|.+ ...+.+.|++.|+... ...+++||+|||...
T Consensus 542 ~~~l~~~~~~~p~~VvllDEieka-------------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~ 608 (731)
T TIGR02639 542 GGLLTEAVRKHPHCVLLLDEIEKA-------------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEM 608 (731)
T ss_pred hhHHHHHHHhCCCeEEEEechhhc-------------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhh
Confidence 223455556677789999999955 4567888999988531 123678999998642
Q ss_pred ----------------------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC-------CCC---CcccHHHH
Q 002169 796 ----------------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-------PCS---SDVNIREL 843 (957)
Q Consensus 796 ----------------------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~-------~~~---~~~~l~~l 843 (957)
.+.|.++. |||.+|.|.+.+.++..+|++..+.+. ++. .+...+.|
T Consensus 609 ~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~L 686 (731)
T TIGR02639 609 SKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYL 686 (731)
T ss_pred hhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHH
Confidence 13567776 999999999999999999999887532 111 12224555
Q ss_pred HHH--ccCCcHHHHHHHHHHHHHHHHHH
Q 002169 844 ACL--SEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 844 a~~--t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
+.. ...|.+|.++.++++.....+.+
T Consensus 687 a~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 687 AEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred HHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 553 33556788888888777666554
No 45
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=5.1e-35 Score=363.34 Aligned_cols=263 Identities=20% Similarity=0.261 Sum_probs=209.3
Q ss_pred cHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc---------------------------
Q 002169 668 HQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW--------------------------- 720 (957)
Q Consensus 668 ~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~--------------------------- 720 (957)
......++|..+|+|+||+||||||||+||||+|+++++||+.|+++++++++
T Consensus 1618 ~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~ 1697 (2281)
T CHL00206 1618 GKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDL 1697 (2281)
T ss_pred CcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccccc
Confidence 34566788999999999999999999999999999999999999999988654
Q ss_pred --------------ccchHH--HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---c
Q 002169 721 --------------VGESEK--AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---Q 781 (957)
Q Consensus 721 --------------vg~~~~--~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---~ 781 (957)
++..+. .++.+|+.|++++||||||||||+++... .....+++|+.+|++.. .
T Consensus 1698 ~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d--------s~~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1698 DTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE--------SNYLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred chhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc--------cceehHHHHHHHhccccccCC
Confidence 122223 37999999999999999999999997541 11224789999999763 3
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHH--hcCCCCCc-ccHHHHHHHccCCcHHHHHHH
Q 002169 782 RVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL--RKIPCSSD-VNIRELACLSEGCTGADISLI 858 (957)
Q Consensus 782 ~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l--~~~~~~~~-~~l~~la~~t~g~sg~dl~~l 858 (957)
..+|+||||||+|+.+||||+||||||+.|+++.|+..+|.+++..++ +++.+..+ +++..+|+.|.||+||||+++
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 458999999999999999999999999999999999999999988654 45555533 579999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC-----------chHHHHHHHHHHHHHhcCchhhhhcccccccchhhh
Q 002169 859 CREAAISAIEENLDASRITMQHLKTAIRHVQPS-----------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG 927 (957)
Q Consensus 859 ~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~-----------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g 927 (957)
|+||++.|+++. ...|+.++++.|+.++... ++..|+...+..+..+.+.+......... .
T Consensus 1850 vNEAaliAirq~--ks~Id~~~I~~Al~Rq~~g~~~~~~~~~~~~ia~yEiGhAvvq~~L~~~~pv~kISIy~------~ 1921 (2281)
T CHL00206 1850 TNEALSISITQK--KSIIDTNTIRSALHRQTWDLRSQVRSVQDHGILFYQIGRAVAQNVLLSNCPIDPISIYM------K 1921 (2281)
T ss_pred HHHHHHHHHHcC--CCccCHHHHHHHHHHHHhhhhhcccCcchhhhhhhHHhHHHHHHhccCCCCcceEEEec------C
Confidence 999999999986 6789999999999876533 44467777777776666655544442111 1
Q ss_pred hhhhhccCCceEEEeecccCCc
Q 002169 928 SNMWTLIKSISLFLCRFPAGLS 949 (957)
Q Consensus 928 ~~L~~~~k~~~~fl~~~~~~~g 949 (957)
..+| +.-.+|++.|+.+.|
T Consensus 1922 ~~~~---r~~~~yl~~wyle~~ 1940 (2281)
T CHL00206 1922 KKSC---KEGDSYLYKWYFELG 1940 (2281)
T ss_pred Cccc---cCcccceeEeecCCc
Confidence 1234 223467888877765
No 46
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.4e-34 Score=329.80 Aligned_cols=250 Identities=48% Similarity=0.791 Sum_probs=228.5
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
..+.|.+.|+|++|++++++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.+.++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
...|+|+....++.+|..|+...|+||||||+|.+...+.....+ .....+.+.+++.++++.....++.||+|||+++
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999998766433221 2233466778888888876667899999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.+|++++|||||++.|+|+.|+.++|.+|++.++.+..+..++++..++..++||+|+|++++|++|++.|+++. ...
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~--~~~ 350 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE--RDY 350 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCc
Confidence 999999999999999999999999999999999999988888999999999999999999999999999999885 678
Q ss_pred CCHHHHHHHHHhh
Q 002169 876 ITMQHLKTAIRHV 888 (957)
Q Consensus 876 It~~d~~~al~~~ 888 (957)
|+.+||.+|+.++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999875
No 47
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-34 Score=337.98 Aligned_cols=229 Identities=43% Similarity=0.697 Sum_probs=215.1
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
...+.|+++||++.+++.+++.+++++.+ +.|...++.+++++|||||||||||+||+++|.+++.+|+.+.++++.++
T Consensus 236 ~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk 315 (494)
T COG0464 236 DEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK 315 (494)
T ss_pred CCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc
Confidence 34578899999999999999999999887 77777899999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh
Q 002169 369 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al 448 (957)
|+|++++.++.+|+.|+...||||||||+|++++.++........+++.+|+..|+++....+++||++||+++.+|+++
T Consensus 316 ~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~ 395 (494)
T COG0464 316 WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPAL 395 (494)
T ss_pred ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhh
Confidence 99999999999999999999999999999999999987766666899999999999999999999999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCC-CChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHS-LLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~-l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+||||||+.|+|+.|+.++|.+||+.++...... ..+.+++.++..+.||+|+||..+|++|++.++++.
T Consensus 396 lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 396 LRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREA 466 (494)
T ss_pred cccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999976653 467899999999999999999999999999998763
No 48
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-35 Score=310.01 Aligned_cols=245 Identities=39% Similarity=0.683 Sum_probs=223.1
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
.+++|+.++|...+..++++.++.|+.++++|.++|+.+|++++||||||||||.+|+++|..++.+|+.+..+++.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHH---HHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 721 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRV---MSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v---~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
.|++.+-+|+.|..|+...|||||+||||++++.+.+... .....+ +-.|+++|++......|-+|+|||+|+.+
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~T--s~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGT--SSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEecccc--chhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 9999999999999999999999999999999988844322 233333 44566677777778899999999999999
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
||||+||||+|+.+.+|.|+...|..|++.+...+......+.+++.+..+||+|+|+++.|+||.+.|+.+. ...+-
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~--~~~vl 362 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEE--RDEVL 362 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchh--hHHHh
Confidence 9999999999999999999999999999999999988888999999999999999999999999999998875 45567
Q ss_pred HHHHHHHHHhhC
Q 002169 878 MQHLKTAIRHVQ 889 (957)
Q Consensus 878 ~~d~~~al~~~~ 889 (957)
.++|..++.++.
T Consensus 363 ~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 363 HEDFMKLVRKQA 374 (388)
T ss_pred HHHHHHHHHHHH
Confidence 788888887654
No 49
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-33 Score=337.71 Aligned_cols=450 Identities=20% Similarity=0.290 Sum_probs=295.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
-.++.+.|.++++..+.+++.. ....++||+||||||||++|+++|..+ +..++.++.
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 3567899999999988887422 235678999999999999999999764 455666666
Q ss_pred cccc--ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 363 PEVV--SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 363 ~~l~--~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
..++ ..|.|+.+.+++.+|+.+....+.||||||+|.+++.+...+.. ..+ .+++..+...+.+.+|++|+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~--~d~----~nlLkp~L~~g~i~vIgATt~ 324 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDA----ANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH--HHH----HHHHHHHHhCCCeEEEecCCh
Confidence 6665 35789999999999999887788999999999998776432221 122 223333335678999999998
Q ss_pred CC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCC----CCCChHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002169 441 PD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGME----HSLLDSEVEYLSMATHGFVGADLAALCNEAA 511 (957)
Q Consensus 441 ~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~----~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~ 511 (957)
++ ..|+++.| ||+ .|.++.|+.+++.+||+.+...+. ..+++..+...+..
T Consensus 325 ~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~l----------------- 384 (758)
T PRK11034 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVEL----------------- 384 (758)
T ss_pred HHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHH-----------------
Confidence 65 57999999 996 699999999999999998765533 22233222222211
Q ss_pred HHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHH
Q 002169 512 LVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIA 591 (957)
Q Consensus 512 ~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (957)
..|+.. .+++|+++++++|++++..+..+.....
T Consensus 385 ---s~ryi~------------------------------~r~lPdKaidlldea~a~~~~~~~~~~~------------- 418 (758)
T PRK11034 385 ---AVKYIN------------------------------DRHLPDKAIDVIDEAGARARLMPVSKRK------------- 418 (758)
T ss_pred ---hhcccc------------------------------CccChHHHHHHHHHHHHhhccCcccccc-------------
Confidence 122221 3668888999998888766543211000
Q ss_pred hhcccCCCCCCCCCccccccccccccHHHHHHHHHhcC--ch-h----hhhHHhhcCCccccccCChHHHHHHHHHHHhc
Q 002169 592 DNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVR--PS-A----MREVILEVPKVKWEDVGGQREVKTQLMEAVEW 664 (957)
Q Consensus 592 ~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~--ps-~----~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~ 664 (957)
..++.+|+........ |. . ..+....+...--..|+||+++++.+.+++..
T Consensus 419 ----------------------~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~ 476 (758)
T PRK11034 419 ----------------------KTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKM 476 (758)
T ss_pred ----------------------cccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHH
Confidence 0122222221111110 00 0 01111112222234689999999999998864
Q ss_pred hhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc------------ccccchHHHHHHHH
Q 002169 665 PQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS------------KWVGESEKAVRSLF 732 (957)
Q Consensus 665 ~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~------------~~vg~~~~~ir~~f 732 (957)
....- . -..+|...+||+||||||||++|+++|..++.+|+.++++++.. .|+|.... ..+.
T Consensus 477 ~~~gl---~-~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~--g~L~ 550 (758)
T PRK11034 477 SRAGL---G-HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLT 550 (758)
T ss_pred Hhccc---c-CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCccccccc--chHH
Confidence 21100 0 01233345999999999999999999999999999999987643 13332111 1233
Q ss_pred HHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCC---------
Q 002169 733 AKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRP--------- 794 (957)
Q Consensus 733 ~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~--------- 794 (957)
+..+....+||||||+|.+ ...+++.|++.|+... ...++++|+|||..
T Consensus 551 ~~v~~~p~sVlllDEieka-------------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~ 617 (758)
T PRK11034 551 DAVIKHPHAVLLLDEIEKA-------------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSI 617 (758)
T ss_pred HHHHhCCCcEEEeccHhhh-------------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhccc
Confidence 4445566689999999965 4568888999998431 12477899999932
Q ss_pred ----------------CCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc-------CCCCCccc---HHHHHHHc-
Q 002169 795 ----------------DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-------IPCSSDVN---IRELACLS- 847 (957)
Q Consensus 795 ----------------~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-------~~~~~~~~---l~~la~~t- 847 (957)
..+.|+++. |+|.+|.|++.+.++..+|++..+.+ .++.-.++ ++.|+...
T Consensus 618 g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~ 695 (758)
T PRK11034 618 GLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGY 695 (758)
T ss_pred CcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCC
Confidence 124577877 99999999999999999998876642 23332222 34444332
Q ss_pred -cCCcHHHHHHHHHHHHHHHHHH
Q 002169 848 -EGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 848 -~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
..|.+|.++.++++-....+.+
T Consensus 696 ~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 696 DRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred CCCCCCchHHHHHHHHHHHHHHH
Confidence 2344678887777666555443
No 50
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=9.2e-34 Score=324.97 Aligned_cols=229 Identities=38% Similarity=0.628 Sum_probs=208.7
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
..+..+|++|||++.+++.|++++.+++.+ +.|..+|+.+++++|||||||||||++|+++|++++.+|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 345678999999999999999999999887 7788999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
.|.|+.+..++.+|+.|....|+||||||+|.++.++... ++....+.+.+|+..|+++....++.||++||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 9999999999999999999999999999999999876432 2334456677888888888777889999999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
|+++.|+||||+.|+|+.|+.++|.+||+.++.++... .+.+++.++..++||+|+||.++|++|++.|+++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~ 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEAGLLALRER 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999888765 56789999999999999999999999999998764
No 51
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=6.6e-34 Score=330.01 Aligned_cols=250 Identities=39% Similarity=0.695 Sum_probs=211.5
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc---------
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN--------- 707 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~--------- 707 (957)
..+.|+++|+||+|++..++++++.+.+|+.++++|..+++.+++|+|||||||||||++||++|++++.+
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 35679999999999999999999999999999999999999999999999999999999999999998644
Q ss_pred -EEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccC
Q 002169 708 -FLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR 782 (957)
Q Consensus 708 -~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~ 782 (957)
|+.+++++++++|+|++++.++.+|..|+.. .|+||||||+|.++..|+... +.....+++++||.+||++...
T Consensus 253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred eEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhcccccC
Confidence 6778889999999999999999999998864 699999999999998775432 2244578899999999999887
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc-CCCCC---------cccHHHHHH-------
Q 002169 783 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-IPCSS---------DVNIRELAC------- 845 (957)
Q Consensus 783 ~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-~~~~~---------~~~l~~la~------- 845 (957)
.+++||+|||+++.||||++||||||..|+|++|+.++|.+||+.++.+ .++.. ..+...+++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999864 34411 111222211
Q ss_pred ----------------------HccCCcHHHHHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHh
Q 002169 846 ----------------------LSEGCTGADISLICREAAISAIEENLD--ASRITMQHLKTAIRH 887 (957)
Q Consensus 846 ----------------------~t~g~sg~dl~~l~~eA~~~a~~~~~~--~~~It~~d~~~al~~ 887 (957)
.++.+||++|+++|.+|...|+++.+. ...|+.+|+..|+..
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLD 477 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHH
Confidence 245678888888888888888877652 346888888887764
No 52
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.6e-33 Score=322.65 Aligned_cols=228 Identities=40% Similarity=0.648 Sum_probs=207.0
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
..+.+.|++|+|++++++.|++.+.+++.+ +.|..+|+.++++||||||||||||++|+++|++++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 345678899999999999999999999887 8888999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
.|.|+.+..++.+|+.+....|+||||||+|.+++.+.... .....+.+.+++..++++...+++.||+|||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 99999999999999999999999999999999998775443 223456667788888887777789999999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
|++++||||||+.|+|+.|+.++|.+||+.+++++... .+.++..++..+.||+|+||.++|++|++.|+++
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAGMFAIRD 355 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999887765 4567999999999999999999999999999865
No 53
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.3e-33 Score=348.42 Aligned_cols=299 Identities=42% Similarity=0.719 Sum_probs=255.8
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
.+.++|+||+|++++++.+.+.+.+|+.+++.++.+++.+++++|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
|.|++++.++.+|+.|....|+||||||+|.+...+... ......+++++|+..|+++.....++||++||+++.+|+
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~--~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV--TGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC--cchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCH
Confidence 999999999999999999999999999999998776433 234567899999999999988888999999999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC-------
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD------- 872 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~------- 872 (957)
+++|+|||++.++++.|+.++|.+|++.+.+.+++..+.++..++..+.||+++|+..+|++|+..++++...
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~ 409 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFE 409 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999999999999999999999999888899999999999999999999999999998876432
Q ss_pred ----------CCCCCHHHHHHHHHhhCCCc---------------hHHHHHHHHHHHHHhcCchhhhhcccccccchhhh
Q 002169 873 ----------ASRITMQHLKTAIRHVQPSE---------------IHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG 927 (957)
Q Consensus 873 ----------~~~It~~d~~~al~~~~p~~---------------~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g 927 (957)
...++.+||..|+..+.|+. +..++..++.+++.+..+......+...
T Consensus 410 ~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~------- 482 (733)
T TIGR01243 410 AEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKM------- 482 (733)
T ss_pred cccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhc-------
Confidence 23578999999999988872 1234445555555544433322221110
Q ss_pred hhhhhccCCceEEEeecccCCcccc
Q 002169 928 SNMWTLIKSISLFLCRFPAGLSQSE 952 (957)
Q Consensus 928 ~~L~~~~k~~~~fl~~~~~~~g~~e 952 (957)
. .++-...|+.||+|.|||.
T Consensus 483 ----g-~~~~~giLL~GppGtGKT~ 502 (733)
T TIGR01243 483 ----G-IRPPKGVLLFGPPGTGKTL 502 (733)
T ss_pred ----C-CCCCceEEEECCCCCCHHH
Confidence 1 1222357889999999983
No 54
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=9.7e-34 Score=338.89 Aligned_cols=245 Identities=40% Similarity=0.679 Sum_probs=225.3
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
+.++|+|++|++++++++.+.+.+ +++++.|..++...++|+||+||||||||++|+++|++++.+|+.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 568999999999999999998876 7888999999999999999999999999999999999999999999999998889
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCC-CCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 721 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~-~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
+|.....++.+|+.|+..+||||||||+|.+...|+... ........++++||.+||+.....+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 998889999999999999999999999999987775432 2234456789999999999887889999999999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ 879 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~ 879 (957)
+++||||||+.|++++|+.++|.+||+.++++..+..+.++..+|+.+.||+|+||+++|++|++.|.++. ...|+.+
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~--~~~It~~ 414 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK--KATITMK 414 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC--CCCcCHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999988775 5679999
Q ss_pred HHHHHHHhh
Q 002169 880 HLKTAIRHV 888 (957)
Q Consensus 880 d~~~al~~~ 888 (957)
||++|+.++
T Consensus 415 dl~~Ai~rv 423 (638)
T CHL00176 415 EIDTAIDRV 423 (638)
T ss_pred HHHHHHHHH
Confidence 999999887
No 55
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-34 Score=308.94 Aligned_cols=228 Identities=34% Similarity=0.574 Sum_probs=212.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhc-CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSL-GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l-~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
..++|++|||++.+++.+++.|.+|+++ +.|..- -..+++|||||||||||||++|+++|.+.|..|+.|.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 4578999999999999999999999988 555322 25699999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCC--eEEEEecCCCCCchh
Q 002169 369 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDG--VLVIAATNRPDSIEP 446 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~--v~vI~ttN~~~~ld~ 446 (957)
|+|+.++.++.+|-.|...+|+||||||+|.++..|.....+....+.++|....|++...++ ++|+++||+|.++|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999999777778889999999999999966655 999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccc
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKI 521 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~ 521 (957)
|+.| |+.+.++|+.|+..+|.+||+.+++..... ++.++..+|..|.||+|+||..+|+.|++..+|.+...
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVS 318 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHh
Confidence 9999 999999999999999999999999998877 88999999999999999999999999999999987764
No 56
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-34 Score=318.18 Aligned_cols=267 Identities=37% Similarity=0.636 Sum_probs=237.1
Q ss_pred hhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEe
Q 002169 633 MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVK 712 (957)
Q Consensus 633 ~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~ 712 (957)
+.++....+++.|+|+.|++.+|+.+.+.+.||...+++|..+ ..+.+++||+||||+|||+|++|||.|++..|..++
T Consensus 140 ~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iS 218 (428)
T KOG0740|consen 140 RNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNIS 218 (428)
T ss_pred HHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeecc
Confidence 3455666788999999999999999999999999999999875 567789999999999999999999999999999999
Q ss_pred CCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--cCCcEEEEEe
Q 002169 713 GPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--QRVNVTVIAA 790 (957)
Q Consensus 713 ~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--~~~~v~VI~a 790 (957)
++.+.++|+|++++.+|.+|.-|+..+|+|+||||+|+++..| .+.......++..++|...++.. ..++|+||+|
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R--s~~e~e~srr~ktefLiq~~~~~s~~~drvlviga 296 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR--SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGA 296 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc--CCcccccchhhhhHHHhhhccccCCCCCeEEEEec
Confidence 9999999999999999999999999999999999999999998 33445778899999999988764 3458999999
Q ss_pred cCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 002169 791 TNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 791 TN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
||+|+.+|.|++| ||.+++|+|+|+.+.|..+|+..+.+.+.. .+.+++.+++.|+||++.||.++|.+|++.-++.
T Consensus 297 TN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~ 374 (428)
T KOG0740|consen 297 TNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRE 374 (428)
T ss_pred CCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhh
Confidence 9999999999999 999999999999999999999999887433 5578999999999999999999999999866554
Q ss_pred hc-----------CCCCCCHHHHHHHHHhhCCC----chHHHHHHHHHHH
Q 002169 870 NL-----------DASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQ 904 (957)
Q Consensus 870 ~~-----------~~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~~ 904 (957)
.. ....++..||+++++.++|+ ..+.|.+|...|.
T Consensus 375 ~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg 424 (428)
T KOG0740|consen 375 LGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFG 424 (428)
T ss_pred cccchhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhc
Confidence 32 23568899999999999988 5667877776653
No 57
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-34 Score=329.64 Aligned_cols=236 Identities=38% Similarity=0.622 Sum_probs=219.7
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
....|.|+-|.++.|+.+.++|.+...+..|..+|...|+||||+||||||||+|||++|++.+.+|+.+++++++..++
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV 224 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 224 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc
Confidence 34678899999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhh
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a 447 (957)
|-...++|.+|++|+..+|||+||||+|++...|+.+ +++..+..+++|+..||+.....++++|++||+|+-+|+|
T Consensus 225 GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~A 304 (596)
T COG0465 225 GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPA 304 (596)
T ss_pred CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHh
Confidence 9999999999999999999999999999999888533 3455667899999999999888899999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccccccc
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQTSSDV 527 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~~~~~ 527 (957)
|.||||||+.|.++.|+...|.+|++.|+++..+. .+.++..+|+.|.||+|+|+.+++++|+..|.|+........+.
T Consensus 305 LlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i 383 (596)
T COG0465 305 LLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDI 383 (596)
T ss_pred hcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccch
Confidence 99999999999999999999999999999998888 78889999999999999999999999999999998776655443
No 58
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=339.14 Aligned_cols=249 Identities=43% Similarity=0.706 Sum_probs=226.9
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCC
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPE 715 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~ 715 (957)
..+.|++|+|++.++++++|.+..|+.+|+.|.++++.||+|+||+||||||||++|+++|..+ ...|+.-++++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 5789999999999999999999999999999999999999999999999999999999999887 34677778999
Q ss_pred cccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 716 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.+++|+|+.++.++.+|+.|+...|+|+|+||||.+++.|..... .....+++.||..|+|+..++.|+||+|||+++
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 999999999999999999999999999999999999998854422 456789999999999999999999999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc---
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENL--- 871 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~--- 871 (957)
.+||||+||||||+.+||++|+.+.|.+|+.++.++..-. ...-+..+|..+.||-|+||+++|.+|++.++++..
T Consensus 418 a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~ 497 (1080)
T KOG0732|consen 418 AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQI 497 (1080)
T ss_pred ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCee
Confidence 9999999999999999999999999999999999987633 334578899999999999999999999999998753
Q ss_pred -----------CCCCCCHHHHHHHHHhhCCC
Q 002169 872 -----------DASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 872 -----------~~~~It~~d~~~al~~~~p~ 891 (957)
....|...||..|+.++.|+
T Consensus 498 y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps 528 (1080)
T KOG0732|consen 498 YSSSDKLLIDVALIKVEVRDFVEAMSRITPS 528 (1080)
T ss_pred ecccccccccchhhhhhhHhhhhhhhccCCC
Confidence 12348899999999998876
No 59
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.5e-32 Score=317.57 Aligned_cols=221 Identities=26% Similarity=0.400 Sum_probs=195.0
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
..+|++|||++..|+.+++..... ......+|+.++++||||||||||||++|+++|++++.+++.+++..+.++|+|
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vG 301 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVG 301 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccC
Confidence 356889999999999998765322 233456899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcC-CCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhC
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKD-GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRR 450 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~-~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r 450 (957)
+++.+++.+|+.|....||||||||+|.++.++.. +......+++.+|+.+|+. ...+++||+|||+++.+|++++|
T Consensus 302 ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR 379 (489)
T CHL00195 302 ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEILR 379 (489)
T ss_pred hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHhC
Confidence 99999999999999999999999999999876433 2345678899999999986 35679999999999999999999
Q ss_pred CCCcceeeeecCCCHHHHHHHHHHHHcCCCCC-CChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 002169 451 PGRLDREIEIAVPSPAQRLEILHALLSGMEHS-LLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 451 ~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~-l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~r 516 (957)
+||||+.|+++.|+.++|.+||+.++.+.... ..+.+++.+|..|+||+|+||+++|.+|+..|..
T Consensus 380 ~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~ 446 (489)
T CHL00195 380 KGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFY 446 (489)
T ss_pred CCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999886533 3577899999999999999999999999887753
No 60
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=5.1e-32 Score=327.75 Aligned_cols=246 Identities=39% Similarity=0.707 Sum_probs=225.7
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccc
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWV 721 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~v 721 (957)
...|+++.|.+..++.+.+.+.+ +..++.+..++...++|++|+||||||||++|+++|++++.+|+.++++++...++
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 45789999999999999999887 56677788888899999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChh
Q 002169 722 GESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPA 800 (957)
Q Consensus 722 g~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~a 800 (957)
|.....++.+|..|+..+||||||||+|.+...|+.. +++.....++++++|.+||+.....+++||+|||+++.+|++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 9999999999999999999999999999998877543 222344567899999999999888899999999999999999
Q ss_pred hhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Q 002169 801 LLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQH 880 (957)
Q Consensus 801 Llr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d 880 (957)
++||||||+.|+|++|+.++|.+||+.++++.++..++++..+|+.|.||+|+||.++|++|+..|.++. ...|+..|
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~--~~~i~~~d 384 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--KRVVSMVE 384 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC--CCcccHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998875 67899999
Q ss_pred HHHHHHhhCC
Q 002169 881 LKTAIRHVQP 890 (957)
Q Consensus 881 ~~~al~~~~p 890 (957)
|++|+.++.+
T Consensus 385 ~~~a~~~v~~ 394 (644)
T PRK10733 385 FEKAKDKIMM 394 (644)
T ss_pred HHHHHHHHhc
Confidence 9999987754
No 61
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.9e-33 Score=291.21 Aligned_cols=226 Identities=37% Similarity=0.615 Sum_probs=201.6
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
..++|+.+||+..++..+++.|++|+.+ +.+..+|+.+|++++||||||||||.+|+++|..+|++|+.+..+.+.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 4578999999999999999999999987 777888999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHH---HHHHHHHhhccccCCCeEEEEecCCCCCchh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRM---VATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i---~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~ 446 (957)
.||+.+.||+.|..|....||||||||||++.+.+...+....+.+ +-.|++.|++...-++|-+|+|||+|+.|+|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 9999999999999999999999999999999998865554444444 4455556666677788999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+|.||||+|+.+++|.|+...|+.|++.+...+... -+.+.+++.+..+||.|+|+...|++|.+-+++.
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~-Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFH-GEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeecccccccc-ccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 999999999999999999999999999887765433 3445788889999999999999999998877654
No 62
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.98 E-value=1e-30 Score=323.71 Aligned_cols=481 Identities=21% Similarity=0.282 Sum_probs=297.7
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~ 361 (957)
...++++.|.++++.++.+++ ..+...+++|+||||||||++|+.+|..+ +.+++.++
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l------------~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDIL------------LRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHH------------hcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 446788999999866666553 22334578999999999999999999876 24577777
Q ss_pred cccccc--cccchhHHHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec
Q 002169 362 GPEVVS--QNYGESEQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438 (957)
Q Consensus 362 ~~~l~~--~~~ge~e~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt 438 (957)
...+.. .+.|+.+..++.+|+.+.. ..+.||||||+|.+.+.+...+.. ...+.|... ..++.+.+|++|
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~---d~~n~Lkp~----l~~G~l~~IgaT 323 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG---DAANLLKPA----LARGELRTIAAT 323 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc---cHHHHhhHH----hhCCCeEEEEec
Confidence 777663 5789999999999998864 458899999999998765432211 111223333 356789999999
Q ss_pred CCCC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCC----CCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 439 NRPD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGM----EHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 439 N~~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~----~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
+..+ .+|++|+| ||. .|.++.|+.+++.+||+.+...+ ...+++..+..++..+.+|..
T Consensus 324 T~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~--------- 391 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP--------- 391 (852)
T ss_pred CHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc---------
Confidence 8753 58999999 995 69999999999999987666543 345567777766666655531
Q ss_pred HHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchh-----
Q 002169 510 AALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLR----- 584 (957)
Q Consensus 510 A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----- 584 (957)
.|++|+++||++|++++..+............+.
T Consensus 392 -----------------------------------------~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~ 430 (852)
T TIGR03345 392 -----------------------------------------GRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAA 430 (852)
T ss_pred -----------------------------------------cccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 2567777777777777655432111110000000
Q ss_pred --------------------------h-------cHHHHHhhcccCCCCC----------CCCCcc-cccc---------
Q 002169 585 --------------------------G-------TVSEIADNFHNGVSDS----------SGGMFM-SEKG--------- 611 (957)
Q Consensus 585 --------------------------~-------~~~~~~~~~~~~~~~~----------~~~~~~-~e~~--------- 611 (957)
. .+..+... |...... ..+... .+..
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (852)
T TIGR03345 431 LELELDALEREAALGADHDERLAELRAELAALEAELAALEAR-WQQEKELVEAILALRAELEADADAPADDDAALRAQLA 509 (852)
T ss_pred HHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHH
Confidence 0 00000000 0000000 000000 0000
Q ss_pred ---------------ccccccHHHHHHHHHhcCc--h-hh----hhHHhhcCCccccccCChHHHHHHHHHHHhchhhcH
Q 002169 612 ---------------CALKLELVDFEKARMKVRP--S-AM----REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQ 669 (957)
Q Consensus 612 ---------------~~~~v~~~df~~a~~~~~p--s-~~----~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~ 669 (957)
....|+..|+......... - .+ .+....+...--..|+||+++++.+.+.+.....
T Consensus 510 ~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~-- 587 (852)
T TIGR03345 510 ELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARA-- 587 (852)
T ss_pred HHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhc--
Confidence 0001122222111111000 0 00 0001111112224689999999999888854211
Q ss_pred HHHHhcC-CCCCCc-ceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc------------ccccchHHHHHHHH
Q 002169 670 EAFKRIG-TRPPTG-ILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS------------KWVGESEKAVRSLF 732 (957)
Q Consensus 670 ~~~~~l~-~~~~~g-iLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~------------~~vg~~~~~ir~~f 732 (957)
.+. -..|.+ +||.||||||||.+|+++|..+ ...++.++++++.. .|+|..+.. .+.
T Consensus 588 ----gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~ 661 (852)
T TIGR03345 588 ----GLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLT 661 (852)
T ss_pred ----CCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHH
Confidence 111 122333 8999999999999999999988 45789999877632 255543322 234
Q ss_pred HHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCC--------
Q 002169 733 AKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPD-------- 795 (957)
Q Consensus 733 ~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~-------- 795 (957)
...+....+||+||||+. +...+.+.|++.++... ...+.+||+|||...
T Consensus 662 ~~v~~~p~svvllDEiek-------------a~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~ 728 (852)
T TIGR03345 662 EAVRRKPYSVVLLDEVEK-------------AHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCA 728 (852)
T ss_pred HHHHhCCCcEEEEechhh-------------cCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhcc
Confidence 555667789999999984 35677888888887542 124788999998421
Q ss_pred ---------------------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC--------CCC---CcccHHHH
Q 002169 796 ---------------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI--------PCS---SDVNIREL 843 (957)
Q Consensus 796 ---------------------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~--------~~~---~~~~l~~l 843 (957)
...|+++. |++ +|.|.+++.++..+|++..+.+. ++. ++...+.|
T Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~L 805 (852)
T TIGR03345 729 DPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHI 805 (852)
T ss_pred CcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHH
Confidence 13567777 997 88999999999999998776432 332 12224556
Q ss_pred HHHcc--CCcHHHHHHHHHHHHHHHHHH
Q 002169 844 ACLSE--GCTGADISLICREAAISAIEE 869 (957)
Q Consensus 844 a~~t~--g~sg~dl~~l~~eA~~~a~~~ 869 (957)
+.... .|.+|.++.+++.-....+.+
T Consensus 806 a~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 806 VARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 66553 355889998888766655544
No 63
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.98 E-value=1.6e-30 Score=323.50 Aligned_cols=477 Identities=22% Similarity=0.280 Sum_probs=303.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~ 361 (957)
.-.++.+.|.+++++++.+++ ......+++|+||||||||++|+.+|..+ +..++.++
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L------------~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQIL------------GRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHH------------cccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 345788999999999999883 33456689999999999999999999876 46789999
Q ss_pred cccccc--cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 362 GPEVVS--QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 362 ~~~l~~--~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
...++. +|.|+.+.+++.+|+.+....+.||||||+|.+.+.+...++. .+.+.|. ..-.++.+.+|++|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~---~~a~lLk----p~l~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI---DAANILK----PALARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc---cHHHHhH----HHHhCCCcEEEEeCC
Confidence 888773 6889999999999999987788999999999998765433221 1222222 323467899999999
Q ss_pred CCC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC----CCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 440 RPD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG----MEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 440 ~~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~----~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
..+ ..++++.+ ||.. |.++.|+.++...|++..... ....++++.+..++..+.+|.+
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~---------- 382 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA---------- 382 (821)
T ss_pred HHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc----------
Confidence 764 47899999 9964 899999999999998865432 2333556666655555554431
Q ss_pred HHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHH
Q 002169 511 ALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEI 590 (957)
Q Consensus 511 ~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (957)
.|++|+++++++|++++..+......+.....+...+..+
T Consensus 383 ----------------------------------------~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~ 422 (821)
T CHL00095 383 ----------------------------------------DRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREI 422 (821)
T ss_pred ----------------------------------------cccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHH
Confidence 2566777777777776655432211111111000000000
Q ss_pred Hhh--------------------------------cccCCCCCCCCCccccccccccccHHHHHHHHHhcCchh---h--
Q 002169 591 ADN--------------------------------FHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSA---M-- 633 (957)
Q Consensus 591 ~~~--------------------------------~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~---~-- 633 (957)
... .|..... .......++.+|+.........-. +
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~v~~~~i~~~~~~~tgip~~~~~~ 494 (821)
T CHL00095 423 LKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEE--------KRLEVPVVTEEDIAEIVSAWTGIPVNKLTK 494 (821)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------ccccCCccCHHHHHHHHHHHHCCCchhhch
Confidence 000 0000000 000112355555544333222111 1
Q ss_pred --hhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcE
Q 002169 634 --REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNF 708 (957)
Q Consensus 634 --~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~ 708 (957)
.+-...+...--..|+||+++++.+..++...... +. -.-+|...+||+||+|||||++|++||..+ ..++
T Consensus 495 ~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~g---l~-~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~ 570 (821)
T CHL00095 495 SESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVG---LK-NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAM 570 (821)
T ss_pred hHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhc---cc-CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccce
Confidence 01111222222356899999999998888542110 00 011222348999999999999999999987 4689
Q ss_pred EEEeCCCcccc------------cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHH
Q 002169 709 LAVKGPELFSK------------WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 776 (957)
Q Consensus 709 i~v~~~~l~~~------------~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~l 776 (957)
+.++++++... |+|..+ ...+.+.++....+|++|||+|.+ ...+.+.|++.|
T Consensus 571 ~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka-------------~~~v~~~Llq~l 635 (821)
T CHL00095 571 IRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA-------------HPDIFNLLLQIL 635 (821)
T ss_pred EEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC-------------CHHHHHHHHHHh
Confidence 99998876421 333322 123555666666689999999954 567888899998
Q ss_pred hccc---------cCCcEEEEEecCCCCC-------------------------------------CChhhhCCCCccee
Q 002169 777 DGLH---------QRVNVTVIAATNRPDK-------------------------------------IDPALLRPGRFDRL 810 (957)
Q Consensus 777 d~~~---------~~~~v~VI~aTN~~~~-------------------------------------id~aLlr~gRfd~~ 810 (957)
+... ...+.++|+|||.... ..|.++. |+|.+
T Consensus 636 e~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~i 713 (821)
T CHL00095 636 DDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEI 713 (821)
T ss_pred ccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeE
Confidence 8531 1347889999985311 1355666 99999
Q ss_pred cccCCCCHHHHHHHHHHHHhcC-------CCCCcc---cHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHH
Q 002169 811 LYVGPPNETDREEIFRIHLRKI-------PCSSDV---NIRELACL--SEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 811 i~~~~P~~~er~~Il~~~l~~~-------~~~~~~---~l~~la~~--t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
|.|.+.+.++..+|++..+.+. ++.-.. ..+.|+.. ...|.+|.|+.++++-....+.+
T Consensus 714 i~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 714 IVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 9999999999999988777542 222111 23445543 12344677777777655544433
No 64
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=1.2e-30 Score=297.72 Aligned_cols=228 Identities=40% Similarity=0.659 Sum_probs=203.7
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
.+.+.|++|+|++++++.|++.+.+++.+ +.+..+|+.+++++|||||||||||++|+++|++++.+++.+.+.++...
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~ 195 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK 195 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence 45678899999999999999999998776 77889999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCch
Q 002169 369 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld 445 (957)
+.|+....++.+|+.+....|+||||||+|.+...+.... .....+.+.+++..++++...+++.||+|||+++.+|
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld 275 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILD 275 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCC
Confidence 9999999999999999999999999999999987765432 2233456677777788776667899999999999999
Q ss_pred hhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 446 ~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
++++|+||||+.|+|+.|+.++|.+|++.++..+... .+.+++.++..+.||+|+||.++|++|++.|+++.
T Consensus 276 ~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~ 347 (364)
T TIGR01242 276 PALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE 347 (364)
T ss_pred hhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999887654 44678999999999999999999999999998763
No 65
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=3.6e-31 Score=313.22 Aligned_cols=229 Identities=38% Similarity=0.626 Sum_probs=207.6
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
+..+|++++|++.+++.+++++.+....+.+..++..+++++||+||||||||++|+++|++++.+++.++++++...+.
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 129 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 129 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHh
Confidence 34678999999999999999998854457788899999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhh
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a 447 (957)
|+.+..++.+|+.|....|+||||||+|.++.+++.+ ......+++++|+..||++....+++||++||+++.+||+
T Consensus 130 g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~a 209 (495)
T TIGR01241 130 GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPA 209 (495)
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHH
Confidence 9999999999999999999999999999999877652 2345567889999999999888899999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
++||||||+.|+++.|+.++|.+|++.++...... .+.+++.++..+.||+++||..+|++|+..+.++...
T Consensus 210 l~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~ 281 (495)
T TIGR01241 210 LLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKT 281 (495)
T ss_pred HhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999887655 6678999999999999999999999999888776543
No 66
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.4e-30 Score=309.40 Aligned_cols=478 Identities=22% Similarity=0.288 Sum_probs=317.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
-.++.++|-++++.++.+++ ..+...+-+|+|+||+|||.++..+|... +..++.++.
T Consensus 167 gklDPvIGRd~EI~r~iqIL------------~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQIL------------SRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCCcChHHHHHHHHHHH------------hccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 45788999999999988884 33445567899999999999999999765 456788887
Q ss_pred ccccc--cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 363 PEVVS--QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 363 ~~l~~--~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
..++. +|.|+.|.+++.+++.+....+.||||||+|.+.+.....++ ... .-+++.....++...+|++|+.
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~D----AaNiLKPaLARGeL~~IGATT~ 308 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMD----AANLLKPALARGELRCIGATTL 308 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccc----hhhhhHHHHhcCCeEEEEeccH
Confidence 77766 488999999999999999888999999999999877654331 111 2233333335788899999976
Q ss_pred CC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCC----CCCChHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002169 441 PD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGME----HSLLDSEVEYLSMATHGFVGADLAALCNEAA 511 (957)
Q Consensus 441 ~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~----~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~ 511 (957)
-+ +-|+||.| ||.. |.+..|+.++-..||+.+...+. ..+++..+. |+
T Consensus 309 ~EYRk~iEKD~AL~R--RFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~--------------------aA 365 (786)
T COG0542 309 DEYRKYIEKDAALER--RFQK-VLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALV--------------------AA 365 (786)
T ss_pred HHHHHHhhhchHHHh--cCce-eeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHH--------------------HH
Confidence 44 56899999 9955 89999999999999997655432 222333222 22
Q ss_pred HHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHH
Q 002169 512 LVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIA 591 (957)
Q Consensus 512 ~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (957)
..-..|+.. +|++|+++||++|+++++...... .+.....+...+..+.
T Consensus 366 v~LS~RYI~------------------------------dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~ 414 (786)
T COG0542 366 VTLSDRYIP------------------------------DRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLE 414 (786)
T ss_pred HHHHHhhcc------------------------------cCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHH
Confidence 222334433 488999999999999999876433 2222111111111111
Q ss_pred hhcccCCCCCC--C------------CCccc--cccccccccHHHHHHHHHhcC---chh----hhhHHhhcCCcccccc
Q 002169 592 DNFHNGVSDSS--G------------GMFMS--EKGCALKLELVDFEKARMKVR---PSA----MREVILEVPKVKWEDV 648 (957)
Q Consensus 592 ~~~~~~~~~~~--~------------~~~~~--e~~~~~~v~~~df~~a~~~~~---ps~----~~~~~~e~p~v~~~di 648 (957)
.....-..+.. . +.++. ..... .|+.+++......+. ... -++.....+..--..|
T Consensus 415 ~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rV 493 (786)
T COG0542 415 IEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRV 493 (786)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcce
Confidence 10000000000 0 00000 00000 144444444333222 111 1233334444455679
Q ss_pred CChHHHHHHHHHHHhchhhcHHHHHhcCC----CCCCcceeeCCCCChhhHHHHHHHHHhC---CcEEEEeCCCcccc--
Q 002169 649 GGQREVKTQLMEAVEWPQKHQEAFKRIGT----RPPTGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPELFSK-- 719 (957)
Q Consensus 649 ~G~~~vk~~l~e~i~~~~~~~~~~~~l~~----~~~~giLL~GPpGtGKTtlAkaiA~~~~---~~~i~v~~~~l~~~-- 719 (957)
+||++++..+..+|... +.|+ +|-..+||.||+|+|||.+||+||..+. ..+++++++++..+
T Consensus 494 iGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHs 565 (786)
T COG0542 494 IGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHS 565 (786)
T ss_pred eChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHH
Confidence 99999999999988632 2233 3333589999999999999999999986 79999999998653
Q ss_pred ----------cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------
Q 002169 720 ----------WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------- 780 (957)
Q Consensus 720 ----------~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------- 780 (957)
|||..+.. .+-+.++....|||+||||+ +++..+++-||+.||.-.
T Consensus 566 VSrLIGaPPGYVGyeeGG--~LTEaVRr~PySViLlDEIE-------------KAHpdV~nilLQVlDdGrLTD~~Gr~V 630 (786)
T COG0542 566 VSRLIGAPPGYVGYEEGG--QLTEAVRRKPYSVILLDEIE-------------KAHPDVFNLLLQVLDDGRLTDGQGRTV 630 (786)
T ss_pred HHHHhCCCCCCceecccc--chhHhhhcCCCeEEEechhh-------------hcCHHHHHHHHHHhcCCeeecCCCCEE
Confidence 77765533 36667777778999999998 578899999999998642
Q ss_pred cCCcEEEEEecCCCC----------------------------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC
Q 002169 781 QRVNVTVIAATNRPD----------------------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI 832 (957)
Q Consensus 781 ~~~~v~VI~aTN~~~----------------------------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~ 832 (957)
...+.+||+|||--. ...|+++. |+|.+|.|.+.+.+...+|++..+.+.
T Consensus 631 dFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 631 DFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred ecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHH
Confidence 124789999998321 02567777 999999999999999999998777532
Q ss_pred -------CCCCc---ccHHHHHHHcc--CCcHHHHHHHHHHHHHHHHH
Q 002169 833 -------PCSSD---VNIRELACLSE--GCTGADISLICREAAISAIE 868 (957)
Q Consensus 833 -------~~~~~---~~l~~la~~t~--g~sg~dl~~l~~eA~~~a~~ 868 (957)
++.-. ...+.++...- .|.+|-++.++++-....+.
T Consensus 709 ~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La 756 (786)
T COG0542 709 AKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLA 756 (786)
T ss_pred HHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHH
Confidence 22211 12344444332 45577777777765544443
No 67
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=1.4e-30 Score=302.23 Aligned_cols=190 Identities=34% Similarity=0.628 Sum_probs=171.8
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------E
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN----------L 357 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~----------~ 357 (957)
..+..+|++|||++++++.|++.|.+++.+ +.|..+|+.+++++|||||||||||++|+++|++++.+ |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 345678999999999999999999999877 88889999999999999999999999999999998644 5
Q ss_pred EEEecccccccccchhHHHHHHHHHHHhcc----CCeEEEEcCccccccCCcCC-CchHHHHHHHHHHHHhhccccCCCe
Q 002169 358 FTVNGPEVVSQNYGESEQALHEVFDSASQS----APAVVFIDELDAIAPARKDG-GEELSQRMVATLLNLMDGVCRTDGV 432 (957)
Q Consensus 358 i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~----~p~IL~IDEiD~l~~~~~~~-~~~~~~~i~~~Ll~~ld~l~~~~~v 432 (957)
+.+.++++.++|.|+++..++.+|+.+... .|+||||||+|.+++.++.+ .++...+++.+|++.||++...+++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 677888999999999999999999988753 69999999999999887654 3456678899999999999877899
Q ss_pred EEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC
Q 002169 433 LVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 433 ~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
+||+|||+++.|||+++||||||++|+|+.|+.++|.+||+.++..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999998864
No 68
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.97 E-value=3.3e-29 Score=312.62 Aligned_cols=485 Identities=21% Similarity=0.293 Sum_probs=299.6
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~ 361 (957)
...++.+.|.++++.++.+++ ..+...+++|+||||||||++++.+|..+ +.+++.++
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVL------------SRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHH------------hcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 345778999999877777763 23345678999999999999999999875 56788888
Q ss_pred ccccc--ccccchhHHHHHHHHHHHhcc-CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec
Q 002169 362 GPEVV--SQNYGESEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438 (957)
Q Consensus 362 ~~~l~--~~~~ge~e~~i~~vf~~a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt 438 (957)
...+. .+|.|+.+..++.+|+.+... .|.||||||+|.+.+.+...+. ....+ .+......+.+.+|++|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~~----~Lk~~l~~g~i~~IgaT 309 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---MDAGN----MLKPALARGELHCIGAT 309 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---hHHHH----HhchhhhcCceEEEEeC
Confidence 77775 457899999999999988653 5899999999999865433221 11222 22333356789999999
Q ss_pred CCCC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCC----CCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 439 NRPD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGME----HSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 439 N~~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~----~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
+..+ .+|+++.| ||.. |.++.|+.+++..|++.+...+. ..+.+..+...+..+++|.
T Consensus 310 t~~e~r~~~~~d~al~r--Rf~~-i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi---------- 376 (852)
T TIGR03346 310 TLDEYRKYIEKDAALER--RFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI---------- 376 (852)
T ss_pred cHHHHHHHhhcCHHHHh--cCCE-EEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc----------
Confidence 9864 57999999 9964 89999999999999998766543 2334444444444433332
Q ss_pred HHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcH--
Q 002169 510 AALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTV-- 587 (957)
Q Consensus 510 A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 587 (957)
..|++|++++|++|++++.++......+.....+...+
T Consensus 377 ----------------------------------------~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~ 416 (852)
T TIGR03346 377 ----------------------------------------TDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQ 416 (852)
T ss_pred ----------------------------------------cccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHH
Confidence 13678888888888888766542111111000000000
Q ss_pred ---------------------------HHHHhh------cccCCCCC----------------------CC---------
Q 002169 588 ---------------------------SEIADN------FHNGVSDS----------------------SG--------- 603 (957)
Q Consensus 588 ---------------------------~~~~~~------~~~~~~~~----------------------~~--------- 603 (957)
..+... .|...... ..
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (852)
T TIGR03346 417 LEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAEL 496 (852)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 000000 00000000 00
Q ss_pred --CCccc-----------------cccccccccHHHHHHHHHhcC--chh-----hhhHHhhcCCccccccCChHHHHHH
Q 002169 604 --GMFMS-----------------EKGCALKLELVDFEKARMKVR--PSA-----MREVILEVPKVKWEDVGGQREVKTQ 657 (957)
Q Consensus 604 --~~~~~-----------------e~~~~~~v~~~df~~a~~~~~--ps~-----~~~~~~e~p~v~~~di~G~~~vk~~ 657 (957)
+.+.. +......++.+|+........ |.. ..+........-...|+|++.+++.
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~ 576 (852)
T TIGR03346 497 QYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEA 576 (852)
T ss_pred hhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHH
Confidence 00000 000000122222222222110 000 0011111122234568999999999
Q ss_pred HHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc------------ccc
Q 002169 658 LMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK------------WVG 722 (957)
Q Consensus 658 l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~------------~vg 722 (957)
+.+.+...... +. -..+|...+||+||+|||||++|++||..+ +.+++.++++++... |+|
T Consensus 577 v~~~i~~~~~g---l~-~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g 652 (852)
T TIGR03346 577 VSDAIRRSRAG---LS-DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVG 652 (852)
T ss_pred HHHHHHHHhcc---CC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccC
Confidence 98887632100 00 011234458999999999999999999986 468999999876432 233
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCC
Q 002169 723 ESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNR 793 (957)
Q Consensus 723 ~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~ 793 (957)
..+. ..+....+....+|||||||+.+ ...+++.|++.|+... ...+.+||+|||.
T Consensus 653 ~~~~--g~l~~~v~~~p~~vlllDeieka-------------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 653 YEEG--GQLTEAVRRKPYSVVLFDEVEKA-------------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred cccc--cHHHHHHHcCCCcEEEEeccccC-------------CHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 2221 22344445555679999999944 5677888999886431 1246789999997
Q ss_pred CCC-------------------------CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc-------CCCC---Ccc
Q 002169 794 PDK-------------------------IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-------IPCS---SDV 838 (957)
Q Consensus 794 ~~~-------------------------id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-------~~~~---~~~ 838 (957)
... ..|.|+. |+|.++.|.+++.++..+|+...+.. .++. .+.
T Consensus 718 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~ 795 (852)
T TIGR03346 718 GSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDA 795 (852)
T ss_pred chHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHH
Confidence 321 2456666 99999999999999999988876642 2222 222
Q ss_pred cHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHH
Q 002169 839 NIRELACLSE--GCTGADISLICREAAISAIEE 869 (957)
Q Consensus 839 ~l~~la~~t~--g~sg~dl~~l~~eA~~~a~~~ 869 (957)
.++.|+...- .+..|.+++++++.....+.+
T Consensus 796 a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 796 ALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred HHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 3455665422 456899999998887766654
No 69
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.97 E-value=4.7e-29 Score=309.93 Aligned_cols=485 Identities=21% Similarity=0.286 Sum_probs=293.3
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~ 361 (957)
...++.+.|.+.++.++.+++ ......+++|+||||||||++|+.+|..+ +.+++.++
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVL------------QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHH------------hcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 345788999999877777763 23345679999999999999999999887 67888888
Q ss_pred ccccc--ccccchhHHHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec
Q 002169 362 GPEVV--SQNYGESEQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438 (957)
Q Consensus 362 ~~~l~--~~~~ge~e~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt 438 (957)
...++ .+|.|+.+.+++.+|+.+.. ..++||||||+|.+.+.+...++. ...+.|. ....++.+.+|++|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~---d~~~~lk----p~l~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLK----PALARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccch---hHHHHhc----chhhcCCCeEEEcC
Confidence 87776 35789999999999998643 568999999999998765433221 1122222 33356889999999
Q ss_pred CCCC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCC----CCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 439 NRPD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGME----HSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 439 N~~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~----~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
+..+ ++|+++.| ||+. |.++.|+.+++..|++.+...+. +.+.+..+...+..+++|.
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~~-i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~---------- 381 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQK-VFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI---------- 381 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCCE-EEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc----------
Confidence 9876 48999999 9974 88999999999999988765532 2334444433333333222
Q ss_pred HHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHH
Q 002169 510 AALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSE 589 (957)
Q Consensus 510 A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (957)
. .+++|+++++++|..++.........+.....+...+..
T Consensus 382 ----------~------------------------------~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~ 421 (857)
T PRK10865 382 ----------A------------------------------DRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQ 421 (857)
T ss_pred ----------c------------------------------CCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHH
Confidence 1 367888889988888888765432211111100000000
Q ss_pred HHhhc-----------------------------------ccCCCCCCCC--Ccccccc---------------------
Q 002169 590 IADNF-----------------------------------HNGVSDSSGG--MFMSEKG--------------------- 611 (957)
Q Consensus 590 ~~~~~-----------------------------------~~~~~~~~~~--~~~~e~~--------------------- 611 (957)
+.... |.......++ ....+..
T Consensus 422 L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~ 501 (857)
T PRK10865 422 LKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSEL 501 (857)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHh
Confidence 00000 0000000000 0000000
Q ss_pred -------------------------ccccccHHHHHHHHHhcC--chh-----hhhHHhhcCCccccccCChHHHHHHHH
Q 002169 612 -------------------------CALKLELVDFEKARMKVR--PSA-----MREVILEVPKVKWEDVGGQREVKTQLM 659 (957)
Q Consensus 612 -------------------------~~~~v~~~df~~a~~~~~--ps~-----~~~~~~e~p~v~~~di~G~~~vk~~l~ 659 (957)
....|+.+|+........ |-. ..+....+...-...++|++.+++.+.
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~ 581 (857)
T PRK10865 502 QYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVS 581 (857)
T ss_pred hhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHH
Confidence 000012222111111100 000 001111222233456889999999998
Q ss_pred HHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc------------cccch
Q 002169 660 EAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK------------WVGES 724 (957)
Q Consensus 660 e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~------------~vg~~ 724 (957)
..+...... +. -.-+|...++|+||+|||||++|++||..+ +.+++.++++++... |+|..
T Consensus 582 ~~i~~~~~g---l~-~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~ 657 (857)
T PRK10865 582 NAIRRSRAG---LS-DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYE 657 (857)
T ss_pred HHHHHHHhc---cc-CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccc
Confidence 888542100 00 001222358999999999999999999886 457999998776432 22222
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCC
Q 002169 725 EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPD 795 (957)
Q Consensus 725 ~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~ 795 (957)
+. ..+....+....+||||||++.+ ...+++.|++.|+... ...+.+||+|||...
T Consensus 658 ~~--g~l~~~v~~~p~~vLllDEieka-------------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~ 722 (857)
T PRK10865 658 EG--GYLTEAVRRRPYSVILLDEVEKA-------------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGS 722 (857)
T ss_pred hh--HHHHHHHHhCCCCeEEEeehhhC-------------CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcch
Confidence 21 11223333444489999999854 4567788888886421 123567899999631
Q ss_pred -------------------------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC-------CCCCccc---H
Q 002169 796 -------------------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-------PCSSDVN---I 840 (957)
Q Consensus 796 -------------------------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~-------~~~~~~~---l 840 (957)
...|+|+. |+|.++.|.+++.++..+|++.++.+. ++.-.++ +
T Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al 800 (857)
T PRK10865 723 DLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEAL 800 (857)
T ss_pred HHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHH
Confidence 23578887 999999999999999998888777542 2222233 3
Q ss_pred HHHHHHc--cCCcHHHHHHHHHHHHHHHHHH
Q 002169 841 RELACLS--EGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 841 ~~la~~t--~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
+.|+... ..|.+|.|+.+++.-+...+.+
T Consensus 801 ~~L~~~gy~~~~GARpL~r~I~~~i~~~la~ 831 (857)
T PRK10865 801 KLLSENGYDPVYGARPLKRAIQQQIENPLAQ 831 (857)
T ss_pred HHHHHcCCCccCChHHHHHHHHHHHHHHHHH
Confidence 3343321 1233678888888766655544
No 70
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=5.2e-30 Score=306.89 Aligned_cols=230 Identities=37% Similarity=0.599 Sum_probs=207.0
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
..+|++++|+++.++.+.+++.+....+.|..++...++++||+||||||||++|+++|++++.+++.++++++...+.|
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g 258 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVG 258 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhh
Confidence 45789999999999999999988655677888999999999999999999999999999999999999999999888888
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al 448 (957)
.....++.+|+.|....||||||||+|.++..++.+ .+......+.+|+..||++....+++||++||+++.+|+++
T Consensus 259 ~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~AL 338 (638)
T CHL00176 259 VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAAL 338 (638)
T ss_pred hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhh
Confidence 888899999999999999999999999998776432 23455678899999999987788999999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcccc
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQ 522 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~ 522 (957)
+||||||+.|.++.|+.++|.+|++.+++..... .+.++..+|..+.||+|+||..+|++|+..+.++.....
T Consensus 339 lRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~-~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~I 411 (638)
T CHL00176 339 LRPGRFDRQITVSLPDREGRLDILKVHARNKKLS-PDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATI 411 (638)
T ss_pred hccccCceEEEECCCCHHHHHHHHHHHHhhcccc-hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999999999999999999885544 677899999999999999999999999998887755433
No 71
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=1.1e-29 Score=277.54 Aligned_cols=220 Identities=21% Similarity=0.299 Sum_probs=178.8
Q ss_pred cccccc-CCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 293 QDISKL-GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 293 ~~~~~i-~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
.+|+++ ||+--...-+..++ ....+..+..+++++|.+++||||||||||++|+++|++++.+++.++++++.++|+|
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~-~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVA-VHIAKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred cchhhhcCccccCHHHHHHHH-HHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 456666 77765555555443 3334455556889999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhc-----cCCeEEEEcCccccccCCcCCCchHHHHHH-HHHHHHhhcc------------ccCCCeE
Q 002169 372 ESEQALHEVFDSASQ-----SAPAVVFIDELDAIAPARKDGGEELSQRMV-ATLLNLMDGV------------CRTDGVL 433 (957)
Q Consensus 372 e~e~~i~~vf~~a~~-----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~-~~Ll~~ld~l------------~~~~~v~ 433 (957)
|+++.++++|+.|.. .+||||||||||++++.++..+.....+++ .+|+++||+. ....++.
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~ 270 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVP 270 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCce
Confidence 999999999999875 469999999999999998755555545554 8999999863 2356799
Q ss_pred EEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC----CcHHHHHHHHHH
Q 002169 434 VIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG----FVGADLAALCNE 509 (957)
Q Consensus 434 vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g----~~gaDi~~l~~~ 509 (957)
||+|||+|+.|||+|+|+||||+.+ +.|+.++|.+|++.++++..+ +..++..|+..+.| |.|+--..+..+
T Consensus 271 VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~ 346 (413)
T PLN00020 271 IIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTFPGQPLDFFGALRARVYDD 346 (413)
T ss_pred EEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCCCCchhhhHHHHHHHHH
Confidence 9999999999999999999999954 689999999999999998654 57889999998876 566655555555
Q ss_pred HHHHHHHH
Q 002169 510 AALVCLRR 517 (957)
Q Consensus 510 A~~~a~rr 517 (957)
+....+.+
T Consensus 347 ~v~~~i~~ 354 (413)
T PLN00020 347 EVRKWIAE 354 (413)
T ss_pred HHHHHHHH
Confidence 55544443
No 72
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=5.5e-30 Score=279.84 Aligned_cols=220 Identities=19% Similarity=0.248 Sum_probs=170.6
Q ss_pred Ccccccc-CChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 642 KVKWEDV-GGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 642 ~v~~~di-~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
..+|+++ +|..-.+.-+.......- ...+...++++|.+++||||||||||++|+++|++++.+|+.++++++.++|
T Consensus 111 ~~~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 111 TRSFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hcchhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 3456666 444433433333322111 1122336789999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHh-----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHH-HHHHHHHhcc------------ccC
Q 002169 721 VGESEKAVRSLFAKARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM-SQLLVELDGL------------HQR 782 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~-----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~-~~LL~~ld~~------------~~~ 782 (957)
+|++++.+|++|..|.. .+||||||||||++++.++. .+..+..+++ .+|+++||+. ...
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGT--TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCC--CCcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 99999999999999975 57999999999999998863 2334445565 7999999863 235
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccC----CcHHHHHHH
Q 002169 783 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG----CTGADISLI 858 (957)
Q Consensus 783 ~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g----~sg~dl~~l 858 (957)
.+|.||+|||+|+.|||+|+||||||+.+ ..|+.++|.+|++.++++.++. ..++..|+..+.| |.|+--..+
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~ 343 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARV 343 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHH
Confidence 57999999999999999999999999865 5899999999999999998776 5788888888876 445444444
Q ss_pred HHHHHHHHHH
Q 002169 859 CREAAISAIE 868 (957)
Q Consensus 859 ~~eA~~~a~~ 868 (957)
..++....+.
T Consensus 344 yd~~v~~~i~ 353 (413)
T PLN00020 344 YDDEVRKWIA 353 (413)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 73
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-30 Score=288.71 Aligned_cols=227 Identities=35% Similarity=0.557 Sum_probs=208.3
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
....+.|+++.|++..++.+.+++.+|..+ ..|. ---.+.+++||.||||+|||+|++++|.+.++.|+.++++++.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~-glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFL-GLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhh-ccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 345578999999999999999999999876 4443 33467889999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--ccCCCeEEEEecCCCCCch
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~~~~~v~vI~ttN~~~~ld 445 (957)
+|+|+.++.++.+|+-|+..+|+|+||||+|.++.+|.+...+.++++..+++..+++. ...++++||+|||+|+++|
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELD 304 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHH
Confidence 99999999999999999999999999999999999997777888899999999888886 3456799999999999999
Q ss_pred hhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 446 ~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
.+++| ||.+.++|+.|+.+.|..+++.++...++.+.+.+++.+++.|+||+|.||.++|++|++.-.+..
T Consensus 305 ea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 305 EAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLREL 375 (428)
T ss_pred HHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhc
Confidence 99999 999999999999999999999999998888999999999999999999999999999988776654
No 74
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=1.2e-29 Score=316.02 Aligned_cols=201 Identities=24% Similarity=0.334 Sum_probs=168.6
Q ss_pred hhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc----------cc------------------
Q 002169 320 TLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN----------YG------------------ 371 (957)
Q Consensus 320 ~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~----------~g------------------ 371 (957)
....+|+.+++||||+||||||||.|||++|++.+++|+.|++++++..+ +|
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 33578899999999999999999999999999999999999999998654 11
Q ss_pred -------------hh--HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc---cCCCeE
Q 002169 372 -------------ES--EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---RTDGVL 433 (957)
Q Consensus 372 -------------e~--e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~---~~~~v~ 433 (957)
+. ..+++.+|+.|++++||||||||||+++.+.. ....+.+|++.|++.. ...+++
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~~s~~~VI 1774 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCERCSTRNIL 1774 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccccCCCCCEE
Confidence 12 23589999999999999999999999986521 1123788999999763 356899
Q ss_pred EEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHc--CCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002169 434 VIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLS--GMEHSLLDSEVEYLSMATHGFVGADLAALCNEAA 511 (957)
Q Consensus 434 vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~--~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~ 511 (957)
||||||+|+.||||++||||||+.|.++.|+..+|.+++..++. +....-...+++.+|..|.||+||||+++|++|+
T Consensus 1775 VIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1775 VIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEAL 1854 (2281)
T ss_pred EEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886543 3443323356899999999999999999999999
Q ss_pred HHHHHHhcccccccc
Q 002169 512 LVCLRRYSKIQTSSD 526 (957)
Q Consensus 512 ~~a~rr~~~~~~~~~ 526 (957)
+.|+++....++..+
T Consensus 1855 liAirq~ks~Id~~~ 1869 (2281)
T CHL00206 1855 SISITQKKSIIDTNT 1869 (2281)
T ss_pred HHHHHcCCCccCHHH
Confidence 999998766555543
No 75
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=1.4e-28 Score=297.97 Aligned_cols=229 Identities=35% Similarity=0.606 Sum_probs=206.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccch
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge 372 (957)
..|+++.|++..++.+.+++.+......+..++...+++++|+||||||||++++++|++++.+|+.++++++...+.|.
T Consensus 149 ~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~ 228 (644)
T PRK10733 149 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGV 228 (644)
T ss_pred CcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcc
Confidence 45778999999999999999887555667778888899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhh
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 449 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~ 449 (957)
....++.+|+.+....|+||||||+|.++..+..+ +.....+++++|+..||++....+++||++||+++.+|++++
T Consensus 229 ~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~ 308 (644)
T PRK10733 229 GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALL 308 (644)
T ss_pred cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHh
Confidence 99999999999999999999999999999877542 234556788999999999988889999999999999999999
Q ss_pred CCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcccc
Q 002169 450 RPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQ 522 (957)
Q Consensus 450 r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~ 522 (957)
||||||+.|.|+.|+.++|.+|++.++++.++. .+.++..++..+.||+|+||.++|++|+..|.++.....
T Consensus 309 RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i 380 (644)
T PRK10733 309 RPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVV 380 (644)
T ss_pred CCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 999999999999999999999999999987765 566788999999999999999999999999988654433
No 76
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.90 E-value=3e-23 Score=255.92 Aligned_cols=286 Identities=19% Similarity=0.261 Sum_probs=215.3
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEE
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLA 710 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~ 710 (957)
.+-.+++++|+++..+.+.+.+. .+...+++|+||||||||++|+++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 45578899999999988776653 3345689999999999999999999987 678889
Q ss_pred EeCCCcc--cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEE
Q 002169 711 VKGPELF--SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 788 (957)
Q Consensus 711 v~~~~l~--~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI 788 (957)
++...+. .+|.|+.++.++.+|+.+....++||||||+|.+.+.+...++ ...+.+.|...|. ++.+.+|
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~----~~~~~~~L~~~l~----~g~i~~I 315 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG----SMDASNLLKPALS----SGKLRCI 315 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc----cHHHHHHHHHHHh----CCCeEEE
Confidence 9988887 4799999999999999998878999999999999866432221 1223344444444 5689999
Q ss_pred EecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCC-----CCcccHHHHHHHccCCc-----HH
Q 002169 789 AATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPC-----SSDVNIRELACLSEGCT-----GA 853 (957)
Q Consensus 789 ~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~-----~~~~~l~~la~~t~g~s-----g~ 853 (957)
+|||..+ .+|+|+.| ||. .|+++.|+.+++.+|++.....+.- ..+..+..++..+..|- ++
T Consensus 316 gaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ 392 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPD 392 (731)
T ss_pred EecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCH
Confidence 9999743 47999999 996 7999999999999999977765321 13445667777776664 45
Q ss_pred HHHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhCCC--------chHHHHHHHHHHHHHhcCchhhhhcccccccc
Q 002169 854 DISLICREAAISAIEEN--LDASRITMQHLKTAIRHVQPS--------EIHSYKELSAKFQRLVHSNAEADESGYQLRPS 923 (957)
Q Consensus 854 dl~~l~~eA~~~a~~~~--~~~~~It~~d~~~al~~~~p~--------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~ 923 (957)
....++++|+.....+. .....|+.+|+..++.....- +...+..+.+.+++.+++++.+... .....
T Consensus 393 kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~--l~~~i 470 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDS--LVSSI 470 (731)
T ss_pred HHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHH--HHHHH
Confidence 56778888776443221 123469999999999886422 5678889999999999999877443 22222
Q ss_pred hhhhhhhhhccCCceEEEeecccCCcccc
Q 002169 924 KSIGSNMWTLIKSISLFLCRFPAGLSQSE 952 (957)
Q Consensus 924 ~~~g~~L~~~~k~~~~fl~~~~~~~g~~e 952 (957)
......+-...|+.++|||.||+|+||||
T Consensus 471 ~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~ 499 (731)
T TIGR02639 471 KRSRAGLGNPNKPVGSFLFTGPTGVGKTE 499 (731)
T ss_pred HHHhcCCCCCCCCceeEEEECCCCccHHH
Confidence 22223355677899999999999999996
No 77
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.89 E-value=3e-22 Score=219.24 Aligned_cols=251 Identities=22% Similarity=0.325 Sum_probs=189.1
Q ss_pred hcCCccccccCChHHHHH---HHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Q 002169 639 EVPKVKWEDVGGQREVKT---QLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 715 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~---~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~ 715 (957)
...+.++++++||+++.. .|.++++ .....+++|||||||||||+|++||+..+.+|..+++..
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~-------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVE-------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHh-------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 445678899999998873 3444443 234567999999999999999999999999999998743
Q ss_pred cccccccchHHHHHHHHHHHHhCC----CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 716 LFSKWVGESEKAVRSLFAKARANA----PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~~~----p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
.+.+.+|.++++|+... ..|||+||||++.... +..||-.|+ .+.+++|+||
T Consensus 84 -------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-------------QD~lLp~vE----~G~iilIGAT 139 (436)
T COG2256 84 -------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-------------QDALLPHVE----NGTIILIGAT 139 (436)
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh-------------hhhhhhhhc----CCeEEEEecc
Confidence 36788999999996533 4799999999986543 234777776 5578889887
Q ss_pred --CCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHh--cCCCC------CcccHHHHHHHccCCcHHHHHHHHHH
Q 002169 792 --NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLR--KIPCS------SDVNIRELACLSEGCTGADISLICRE 861 (957)
Q Consensus 792 --N~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~--~~~~~------~~~~l~~la~~t~g~sg~dl~~l~~e 861 (957)
|....+++||++ |+ +++.+.+.+.++..++++..+. +.++. ++...+.++..+.| |.+.+++-
T Consensus 140 TENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~ 212 (436)
T COG2256 140 TENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNL 212 (436)
T ss_pred CCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHH
Confidence 555679999999 76 4888999999999999988443 33333 33456778888888 66666654
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhhCCC---chHHHHHHHHHHHHHhcCchhhhhcccccccchhhhhhhhhcc
Q 002169 862 AAISAIEENLDASRITMQHLKTAIRHVQPS---EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLI 934 (957)
Q Consensus 862 A~~~a~~~~~~~~~It~~d~~~al~~~~p~---~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~L~~~~ 934 (957)
.-+.+..... ...+..+.+++.+.+..+. ..+.++++...|+|++++++.++.+||..|+.......+|-.+
T Consensus 213 LE~~~~~~~~-~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiAR 287 (436)
T COG2256 213 LELAALSAEP-DEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIAR 287 (436)
T ss_pred HHHHHHhcCC-CcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHH
Confidence 3333332221 2244588888888886664 5678899999999999999999999999999887776666443
No 78
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.88 E-value=2.5e-22 Score=244.80 Aligned_cols=285 Identities=19% Similarity=0.235 Sum_probs=210.1
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEEE
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAV 711 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v 711 (957)
.-.++.++|.++..+++.+.+.. +...++||+||||||||++|+++|... +..++.+
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l 248 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec
Confidence 44677899999999888876642 345678999999999999999999764 4556666
Q ss_pred eCCCcc--cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEE
Q 002169 712 KGPELF--SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789 (957)
Q Consensus 712 ~~~~l~--~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~ 789 (957)
+...++ .+|.|+++..++.+|..+....++||||||+|.+...+...++ ...+.+.|...+ .++.+.+|+
T Consensus 249 ~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g----~~d~~nlLkp~L----~~g~i~vIg 320 (758)
T PRK11034 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG----QVDAANLIKPLL----SSGKIRVIG 320 (758)
T ss_pred cHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc----HHHHHHHHHHHH----hCCCeEEEe
Confidence 655555 4688999999999999998888899999999999876532211 122222232233 466899999
Q ss_pred ecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccH-----HHHHHHcc-----CCcHHH
Q 002169 790 ATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNI-----RELACLSE-----GCTGAD 854 (957)
Q Consensus 790 aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l-----~~la~~t~-----g~sg~d 854 (957)
+||.++ ..|++|.| ||+ .|.++.|+.+++..|++.+..++....++.+ ...+..+. .+-+..
T Consensus 321 ATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdK 397 (758)
T PRK11034 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_pred cCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHH
Confidence 999875 47999999 995 7999999999999999998887776655543 33333333 334668
Q ss_pred HHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhCCC--------chHHHHHHHHHHHHHhcCchhhhhcccccccch
Q 002169 855 ISLICREAAISAIEEN--LDASRITMQHLKTAIRHVQPS--------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSK 924 (957)
Q Consensus 855 l~~l~~eA~~~a~~~~--~~~~~It~~d~~~al~~~~p~--------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 924 (957)
...++.+|+....... .....|+.+|+.+.+.+...- +.+.+..+.+.+++.+++++.+... .....+
T Consensus 398 aidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~--l~~~i~ 475 (758)
T PRK11034 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEA--LTEAIK 475 (758)
T ss_pred HHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHH--HHHHHH
Confidence 8999999986542211 113458889999888775532 5567888999999999999887543 222222
Q ss_pred hhhhhhhhccCCceEEEeecccCCcccc
Q 002169 925 SIGSNMWTLIKSISLFLCRFPAGLSQSE 952 (957)
Q Consensus 925 ~~g~~L~~~~k~~~~fl~~~~~~~g~~e 952 (957)
..-..|-+..||+.+|||.||+|+||||
T Consensus 476 ~~~~gl~~~~kp~~~~Lf~GP~GvGKT~ 503 (758)
T PRK11034 476 MSRAGLGHEHKPVGSFLFAGPTGVGKTE 503 (758)
T ss_pred HHhccccCCCCCcceEEEECCCCCCHHH
Confidence 2223456678899999999999999996
No 79
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.8e-22 Score=234.35 Aligned_cols=285 Identities=20% Similarity=0.267 Sum_probs=214.6
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEE
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLA 710 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~ 710 (957)
....+|-++|.++.++++.+.+. .+...+.+|+|+||+|||.++..+|... +..++.
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~-------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILS-------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHh-------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 45678899999999988877763 4567789999999999999999999764 567788
Q ss_pred EeCCCccc--ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEE
Q 002169 711 VKGPELFS--KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 788 (957)
Q Consensus 711 v~~~~l~~--~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI 788 (957)
++.+.+.. +|.|+++..++.+++.+....+.||||||||.+.+.....+++.++.+-+.. . -.++.+.+|
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKP----a----LARGeL~~I 303 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKP----A----LARGELRCI 303 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHH----H----HhcCCeEEE
Confidence 88887765 5999999999999999998889999999999998765443211223322222 2 246788999
Q ss_pred EecCCCCC-----CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCccc-----HHHHHHHccC-----CcHH
Q 002169 789 AATNRPDK-----IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN-----IRELACLSEG-----CTGA 853 (957)
Q Consensus 789 ~aTN~~~~-----id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~-----l~~la~~t~g-----~sg~ 853 (957)
+||+..+. -|+||-| || +.|++..|+.++...|++-...++...+.+. +.+.+..+.. +-+.
T Consensus 304 GATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPD 380 (786)
T COG0542 304 GATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPD 380 (786)
T ss_pred EeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCc
Confidence 99986553 4999999 99 4889999999999999998888776654432 3333433333 3344
Q ss_pred HHHHHHHHHHHHHHHHh----------------------------------------------------cCCCCCCHHHH
Q 002169 854 DISLICREAAISAIEEN----------------------------------------------------LDASRITMQHL 881 (957)
Q Consensus 854 dl~~l~~eA~~~a~~~~----------------------------------------------------~~~~~It~~d~ 881 (957)
....++.+|+.....+. +.. .|+.+++
T Consensus 381 KAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~I 459 (786)
T COG0542 381 KAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA-EVDEDDI 459 (786)
T ss_pred hHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhh-ccCHHHH
Confidence 45555555554432210 001 2566777
Q ss_pred HHHHHhhCC--------CchHHHHHHHHHHHHHhcCchhhhhcccccccchhhhhhhhhccCCceEEEeecccCCcccc
Q 002169 882 KTAIRHVQP--------SEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCRFPAGLSQSE 952 (957)
Q Consensus 882 ~~al~~~~p--------~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~L~~~~k~~~~fl~~~~~~~g~~e 952 (957)
.+.+.+..- .+.+.+.++.+.+++.+++++.+... +.+.++.....|-++.||++||||.|||||||||
T Consensus 460 a~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~a--vs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTE 536 (786)
T COG0542 460 AEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEA--VSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTE 536 (786)
T ss_pred HHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHH--HHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHH
Confidence 777766442 26678999999999999999998766 6677777778899999999999999999999998
No 80
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.87 E-value=5.2e-21 Score=237.58 Aligned_cols=286 Identities=21% Similarity=0.253 Sum_probs=198.9
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEE
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFL 709 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i 709 (957)
..+-.+++++|+++....+.+.+. .+...+++|+||||||||++|+.+|..+ +..++
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 345678999999998777766543 3445689999999999999999999876 35577
Q ss_pred EEeCCCccc--ccccchHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 710 AVKGPELFS--KWVGESEKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 710 ~v~~~~l~~--~~vg~~~~~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
.++.+.+.. .|.|+++..++.+|+.++. ..++||||||+|.+.+.++..+ +.. +-+.|+..| .++.+.
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~d----~~n~Lkp~l----~~G~l~ 318 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QGD----AANLLKPAL----ARGELR 318 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-ccc----HHHHhhHHh----hCCCeE
Confidence 888777663 6899999999999999875 4688999999999987654321 111 122333333 366899
Q ss_pred EEEecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-----CcccHHHHHHHccCCc-----
Q 002169 787 VIAATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-----SDVNIRELACLSEGCT----- 851 (957)
Q Consensus 787 VI~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-----~~~~l~~la~~t~g~s----- 851 (957)
+|+||+..+ .+|+||.| ||. .|.++.|+.+++.+||+.+.+.+... .+..+..++..+.+|-
T Consensus 319 ~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~L 395 (852)
T TIGR03345 319 TIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQL 395 (852)
T ss_pred EEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccC
Confidence 999998754 37999999 995 89999999999999987766554322 2344566666666654
Q ss_pred HHHHHHHHHHHHHHHHHHh-------------------------------------------------------------
Q 002169 852 GADISLICREAAISAIEEN------------------------------------------------------------- 870 (957)
Q Consensus 852 g~dl~~l~~eA~~~a~~~~------------------------------------------------------------- 870 (957)
+.....++.+|+.....+.
T Consensus 396 PDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (852)
T TIGR03345 396 PDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQ 475 (852)
T ss_pred ccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344444444433221100
Q ss_pred ------------------------------------------------cCCCCCCHHHHHHHHHhhCC--------CchH
Q 002169 871 ------------------------------------------------LDASRITMQHLKTAIRHVQP--------SEIH 894 (957)
Q Consensus 871 ------------------------------------------------~~~~~It~~d~~~al~~~~p--------~~~~ 894 (957)
.....|+.+|+.+.+.+... .+.+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~ 555 (852)
T TIGR03345 476 EKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIE 555 (852)
T ss_pred HHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHH
Confidence 00012455555555544332 2556
Q ss_pred HHHHHHHHHHHHhcCchhhhhcccccccchhhhhhhhhccCCceEEEeecccCCcccc
Q 002169 895 SYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCRFPAGLSQSE 952 (957)
Q Consensus 895 ~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~L~~~~k~~~~fl~~~~~~~g~~e 952 (957)
.+..+.+.+++.+++++.+... +....+..-..|-+..||+++|||.||+|+||||
T Consensus 556 ~l~~l~~~L~~~v~GQ~~Av~~--v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~ 611 (852)
T TIGR03345 556 AVLSLPDRLAERVIGQDHALEA--IAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTE 611 (852)
T ss_pred HHHHHHHHhcCeEcChHHHHHH--HHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHH
Confidence 7788889999999999887543 3333333334466778999999999999999996
No 81
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.86 E-value=3.1e-21 Score=240.62 Aligned_cols=285 Identities=21% Similarity=0.275 Sum_probs=209.1
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEE
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLA 710 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~ 710 (957)
..-.|+.++|.++..+++.+.+. .+...+++|+||||||||++|+++|... +..++.
T Consensus 174 ~~~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 174 IDGNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred HcCCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 34568999999999999888764 3456789999999999999999999876 468899
Q ss_pred EeCCCcc--cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEE
Q 002169 711 VKGPELF--SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 788 (957)
Q Consensus 711 v~~~~l~--~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI 788 (957)
+++..++ .+|.|+++..++.+|+.+....++||||||+|.+.+.++..+ +. .+.+-|...+ .++.+.+|
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g-~~----~~a~lLkp~l----~rg~l~~I 311 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG-AI----DAANILKPAL----ARGELQCI 311 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC-cc----cHHHHhHHHH----hCCCcEEE
Confidence 9988876 468999999999999999888899999999999986653321 11 1222232333 36689999
Q ss_pred EecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC----CC-CCcccHHHHHHHccCCc-----HH
Q 002169 789 AATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI----PC-SSDVNIRELACLSEGCT-----GA 853 (957)
Q Consensus 789 ~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~----~~-~~~~~l~~la~~t~g~s-----g~ 853 (957)
++|+..+ ..|+++.+ ||. .|.++.|+.++...|++.....+ .+ ..+..+..++..+.+|. ++
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPd 388 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPD 388 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCch
Confidence 9999765 47999999 996 67999999999989888655322 22 23344666777777665 34
Q ss_pred HHHHHHHHHHHHHHHHh-------------------------------------------------------------cC
Q 002169 854 DISLICREAAISAIEEN-------------------------------------------------------------LD 872 (957)
Q Consensus 854 dl~~l~~eA~~~a~~~~-------------------------------------------------------------~~ 872 (957)
....++.+|+....... ..
T Consensus 389 kaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (821)
T CHL00095 389 KAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLE 468 (821)
T ss_pred HHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 55566666654332110 00
Q ss_pred CCCCCHHHHHHHHHhhCCC--------chHHHHHHHHHHHHHhcCchhhhhcccccccchhhhhhhhhccCCceEEEeec
Q 002169 873 ASRITMQHLKTAIRHVQPS--------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCRF 944 (957)
Q Consensus 873 ~~~It~~d~~~al~~~~p~--------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~L~~~~k~~~~fl~~~ 944 (957)
...|+.+|+.+.+....-- +.+.+..+.+.+++.+++++.+... +....+..-..|-...||+++|||.|
T Consensus 469 ~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~--l~~~i~~~~~gl~~~~~p~~~~lf~G 546 (821)
T CHL00095 469 VPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVA--VSKAIRRARVGLKNPNRPIASFLFSG 546 (821)
T ss_pred CCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHH--HHHHHHHHhhcccCCCCCceEEEEEC
Confidence 1358888888888775422 5567889999999999999888554 22333322334667899999999999
Q ss_pred ccCCcccc
Q 002169 945 PAGLSQSE 952 (957)
Q Consensus 945 ~~~~g~~e 952 (957)
|+|+||||
T Consensus 547 p~GvGKt~ 554 (821)
T CHL00095 547 PTGVGKTE 554 (821)
T ss_pred CCCCcHHH
Confidence 99999996
No 82
>CHL00181 cbbX CbbX; Provisional
Probab=99.86 E-value=8.3e-21 Score=208.85 Aligned_cols=215 Identities=18% Similarity=0.196 Sum_probs=166.0
Q ss_pred ccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCC---cceeeCCCCChhhHHHHHHHHHhC-------CcEEEEeCC
Q 002169 645 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT---GILMFGPPGCSKTLMARAVASEAG-------LNFLAVKGP 714 (957)
Q Consensus 645 ~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~---giLL~GPpGtGKTtlAkaiA~~~~-------~~~i~v~~~ 714 (957)
+.+++|++++|+++.+.+.| ...++.....|..++. +++|+||||||||++|+++|..+. .+++.++..
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 35799999999999999988 3455666777765543 489999999999999999998752 368999999
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
++.+.|+|+++...+.+|++|..+ ||||||+|.+...+. .......++..|+..|+.. ..+++||++++..
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~gg---VLfIDE~~~l~~~~~----~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~ 171 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMGG---VLFIDEAYYLYKPDN----ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccCC---EEEEEccchhccCCC----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcH
Confidence 999999999988888999988654 999999999864321 1235678889999999853 3568888888643
Q ss_pred C-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHH----H--ccCCc-HHHHHHHHHH
Q 002169 795 D-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV-NIRELAC----L--SEGCT-GADISLICRE 861 (957)
Q Consensus 795 ~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~-~l~~la~----~--t~g~s-g~dl~~l~~e 861 (957)
. .++|++.+ ||+..|+|++|+.+++.+|++.++.+....-.. ....+.. . ...|. +|++++++++
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 2 34799999 999999999999999999999999876543222 2222222 1 13344 8999999999
Q ss_pred HHHHHHHHhc
Q 002169 862 AAISAIEENL 871 (957)
Q Consensus 862 A~~~a~~~~~ 871 (957)
|......+..
T Consensus 250 ~~~~~~~r~~ 259 (287)
T CHL00181 250 ARMRQANRIF 259 (287)
T ss_pred HHHHHHHHHH
Confidence 9887766654
No 83
>CHL00181 cbbX CbbX; Provisional
Probab=99.86 E-value=1.5e-20 Score=206.89 Aligned_cols=215 Identities=23% Similarity=0.290 Sum_probs=173.0
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCC---CCeEEEEcCCCChHHHHHHHHHHHcC-------CcEEEEeccccc
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRP---TKGVLLHGPPGTGKTSLARLCAHDSG-------VNLFTVNGPEVV 366 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~---~~~vLL~GppGtGKTtLaralA~~l~-------~~~i~i~~~~l~ 366 (957)
+++|++++|++|++++.+...+..+...|+.+ +.+++|+||||||||++|+++|..+. .+++.+++.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 69999999999999998876666666677654 45699999999999999999998752 258999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC----
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD---- 442 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~---- 442 (957)
+.|.|+++..++.+|+.+.. +||||||+|.+...+. ........+..|+..|+.. ..+++||++++...
T Consensus 104 ~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~~ 176 (287)
T CHL00181 104 GQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMDKF 176 (287)
T ss_pred HHHhccchHHHHHHHHHccC---CEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHH
Confidence 99999998888889988753 5999999999875432 2345677888999999863 45688888876422
Q ss_pred -CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHH------cCCCc-HHHHHHHHHHHHHHH
Q 002169 443 -SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA------THGFV-GADLAALCNEAALVC 514 (957)
Q Consensus 443 -~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~------t~g~~-gaDi~~l~~~A~~~a 514 (957)
.++|++++ ||+..|+|+.|+.+++.+|++.++.+....+++.....+... .+.|. +++++++++.|..+-
T Consensus 177 ~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~ 254 (287)
T CHL00181 177 YESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQ 254 (287)
T ss_pred HhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHH
Confidence 23589999 999999999999999999999999988777777766655543 24454 899999999998888
Q ss_pred HHHhcc
Q 002169 515 LRRYSK 520 (957)
Q Consensus 515 ~rr~~~ 520 (957)
..|...
T Consensus 255 ~~r~~~ 260 (287)
T CHL00181 255 ANRIFE 260 (287)
T ss_pred HHHHHc
Confidence 777654
No 84
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=2.5e-20 Score=203.24 Aligned_cols=217 Identities=23% Similarity=0.302 Sum_probs=171.4
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCC---CCCeEEEEcCCCChHHHHHHHHHHHc-------CCcEEEEecc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLR---PTKGVLLHGPPGTGKTSLARLCAHDS-------GVNLFTVNGP 363 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~---~~~~vLL~GppGtGKTtLaralA~~l-------~~~~i~i~~~ 363 (957)
.+++++|++++|+.|++++.+..........|+. ...+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 4678999999999999999888776555556654 34578999999999999999999864 2368899999
Q ss_pred cccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC-
Q 002169 364 EVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD- 442 (957)
Q Consensus 364 ~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~- 442 (957)
++.+.++|+....++.+|+.+. ++||||||+|.|.+.. ........+..|+..|+.. ..++++|++++..+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~---~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG---EKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC---ccchHHHHHHHHHHHHhcc--CCCEEEEecCCcchh
Confidence 9999999999999999998875 3599999999997422 1223456777888888774 45566776665432
Q ss_pred ----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHc---------CCCcHHHHHHHHHH
Q 002169 443 ----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMAT---------HGFVGADLAALCNE 509 (957)
Q Consensus 443 ----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t---------~g~~gaDi~~l~~~ 509 (957)
.++|++++ ||+..|.|+.++.+++.+|++.++......+++..++.++... ..-.++.+.+++..
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 36789998 9988899999999999999999998887778888887775432 12357888899998
Q ss_pred HHHHHHHHhcc
Q 002169 510 AALVCLRRYSK 520 (957)
Q Consensus 510 A~~~a~rr~~~ 520 (957)
|..+...|...
T Consensus 234 a~~~~~~r~~~ 244 (261)
T TIGR02881 234 AIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHhc
Confidence 88877777654
No 85
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.9e-21 Score=212.11 Aligned_cols=214 Identities=25% Similarity=0.364 Sum_probs=169.6
Q ss_pred hHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 635 ~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
.+..+.| .+|+.++-..+.|+.|.+-+....+..+.+++.|....+|.|||||||||||+++.|+|+.++..++.++..
T Consensus 191 ~v~f~Hp-stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt 269 (457)
T KOG0743|consen 191 SVGFPHP-STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELT 269 (457)
T ss_pred ecCCCCC-CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeec
Confidence 3344556 789999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-----CcchHHHHHHHHHHHhccccCC--cEEE
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-----VSVSDRVMSQLLVELDGLHQRV--NVTV 787 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-----~~~~~~v~~~LL~~ld~~~~~~--~v~V 787 (957)
+... .. .+|.++..+... +||+|.+||.-+..+...... .....-.++.||+.+||+-... ..+|
T Consensus 270 ~v~~-----n~-dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIi 341 (457)
T KOG0743|consen 270 EVKL-----DS-DLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERII 341 (457)
T ss_pred cccC-----cH-HHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEE
Confidence 6533 22 278888776554 599999999876644333221 1123466889999999997655 7899
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccC--CcHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG--CTGADISLIC 859 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g--~sg~dl~~l~ 859 (957)
|+|||..+.+||||+||||+|..|+++..+.++-+.+++.++.--. +..-++++.+..++ .|+||+...+
T Consensus 342 vFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 342 VFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999886432 22333444433332 4677765443
No 86
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.85 E-value=3.2e-20 Score=202.46 Aligned_cols=225 Identities=20% Similarity=0.248 Sum_probs=166.8
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCC---CcceeeCCCCChhhHHHHHHHHHh-------CCcEEEEeC
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPP---TGILMFGPPGCSKTLMARAVASEA-------GLNFLAVKG 713 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~---~giLL~GPpGtGKTtlAkaiA~~~-------~~~~i~v~~ 713 (957)
.+++++|++++|+++.+.+.|+... ......|..++ .+++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 3578999999999999999887554 33334455433 358999999999999999999874 247888999
Q ss_pred CCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 714 PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
+++.+.|+|+....++.+|+.|.. +||||||+|.+... .........++.|+..|+.. ..++++|++++.
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~~-----~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLARG-----GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhccC---CEEEEechhhhccC-----CccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 999999999999999999998864 49999999998531 11124467788899988864 345666666543
Q ss_pred CC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHH-------cc--CCcHHHHHHH
Q 002169 794 PD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACL-------SE--GCTGADISLI 858 (957)
Q Consensus 794 ~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~-------t~--g~sg~dl~~l 858 (957)
.+ .++|++.+ ||+..|.|+.++.+++.+|++.++...+..-+ ..+..++.. .. .-++|.++++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 32 36889998 99989999999999999999999987654322 223333221 11 1268999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHH
Q 002169 859 CREAAISAIEENLDASRITMQHL 881 (957)
Q Consensus 859 ~~eA~~~a~~~~~~~~~It~~d~ 881 (957)
+..|......+.+....++.+++
T Consensus 231 ~e~a~~~~~~r~~~~~~~~~~~~ 253 (261)
T TIGR02881 231 IEKAIRRQAVRLLDKSDYSKEDL 253 (261)
T ss_pred HHHHHHHHHHHHhccCCCCHHHH
Confidence 99988877766555444544443
No 87
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.85 E-value=3.5e-20 Score=204.00 Aligned_cols=215 Identities=24% Similarity=0.277 Sum_probs=175.5
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCC---CCeEEEEcCCCChHHHHHHHHHHHcC-------CcEEEEeccccc
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRP---TKGVLLHGPPGTGKTSLARLCAHDSG-------VNLFTVNGPEVV 366 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~---~~~vLL~GppGtGKTtLaralA~~l~-------~~~i~i~~~~l~ 366 (957)
+++|++++|++|++++.+...+..+..+|+.+ +.+++|+||||||||++|+++|..+. .+++.+++.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 59999999999999999876667777778764 55899999999999999999997762 268999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC--C--
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP--D-- 442 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~--~-- 442 (957)
+.+.|+++..++.+|+.+.. ++|||||+|.+.+.+. .......++..|+..|+. ...+++||++++.. +
T Consensus 103 ~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~~ 175 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDSF 175 (284)
T ss_pred HhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHH
Confidence 99999998889999998754 5999999999865432 234566788889999986 34678888887653 2
Q ss_pred -CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHH-------cCCCcHHHHHHHHHHHHHHH
Q 002169 443 -SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA-------THGFVGADLAALCNEAALVC 514 (957)
Q Consensus 443 -~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~-------t~g~~gaDi~~l~~~A~~~a 514 (957)
.++|++++ ||+..|+|+.++.+++.+|++.++.+....+++..++.+... ...-++++++++++.|..+.
T Consensus 176 ~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~ 253 (284)
T TIGR02880 176 FESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQ 253 (284)
T ss_pred HhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHH
Confidence 24689999 999999999999999999999999988777788777777665 22335899999999998888
Q ss_pred HHHhcc
Q 002169 515 LRRYSK 520 (957)
Q Consensus 515 ~rr~~~ 520 (957)
..|...
T Consensus 254 ~~r~~~ 259 (284)
T TIGR02880 254 ANRLFC 259 (284)
T ss_pred HHHHhc
Confidence 777654
No 88
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.84 E-value=4.1e-20 Score=203.41 Aligned_cols=213 Identities=17% Similarity=0.214 Sum_probs=167.1
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCC---CCcceeeCCCCChhhHHHHHHHHHhC-------CcEEEEeCCC
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRP---PTGILMFGPPGCSKTLMARAVASEAG-------LNFLAVKGPE 715 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~---~~giLL~GPpGtGKTtlAkaiA~~~~-------~~~i~v~~~~ 715 (957)
++++|++++|+++.+.+.| ...++.+.+.|+.+ ..+++|+||||||||++|+++|..+. .+|+.+++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH
Confidence 3689999999999999988 56777777778764 34799999999999999999998762 3799999999
Q ss_pred cccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC-
Q 002169 716 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP- 794 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~- 794 (957)
+.+.|.|+++..++.+|+.|.. ++|||||+|.+...+. .......+++.|+..|+.. ..+++||++++..
T Consensus 101 l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~----~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 101 LVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN----ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred HhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 9999999998889999998865 4999999998854321 1245678889999999853 4578888887643
Q ss_pred -C---CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHc------cCC-cHHHHHHHHHHH
Q 002169 795 -D---KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV-NIRELACLS------EGC-TGADISLICREA 862 (957)
Q Consensus 795 -~---~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~-~l~~la~~t------~g~-sg~dl~~l~~eA 862 (957)
+ .++|++.+ ||+..|+||+++.+++..|++.++.+....-+. ....++... +.+ ++++++++++.|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 2 24899999 999999999999999999999999886543222 233333321 111 589999999999
Q ss_pred HHHHHHHh
Q 002169 863 AISAIEEN 870 (957)
Q Consensus 863 ~~~a~~~~ 870 (957)
......+.
T Consensus 250 ~~~~~~r~ 257 (284)
T TIGR02880 250 RLRQANRL 257 (284)
T ss_pred HHHHHHHH
Confidence 88776654
No 89
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=9.9e-20 Score=197.43 Aligned_cols=209 Identities=24% Similarity=0.381 Sum_probs=160.4
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
+.--+++|+-.......|..+....-.. .....+-++|+||||||||||++||-||..+|..+..+.+.++...
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNT-----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl- 423 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANT-----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL- 423 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccc-----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-
Confidence 4445788888888887777654321111 1123456679999999999999999999999999998888886432
Q ss_pred ccchHHHHHHHHHHHHhCCCe-EEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 721 VGESEKAVRSLFAKARANAPS-IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~-ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
-.+....++++|+.|+..... +|||||+|+++..|....- +......+|+||-.-. ....+++++.+||+|..+|.
T Consensus 424 G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktym-SEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 424 GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYM-SEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhh-cHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhH
Confidence 234566789999999876543 8899999999988865422 2455666777764433 34558889999999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC---------------------------CcccHHHHHHHccCCcH
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS---------------------------SDVNIRELACLSEGCTG 852 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~---------------------------~~~~l~~la~~t~g~sg 852 (957)
|+-. |||++++||+|..++|.+++..++.++-.. .+..+.+.|..|+||||
T Consensus 501 AV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSG 578 (630)
T KOG0742|consen 501 AVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSG 578 (630)
T ss_pred HHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcH
Confidence 9999 999999999999999999999999765321 01125678999999999
Q ss_pred HHHHHHHH
Q 002169 853 ADISLICR 860 (957)
Q Consensus 853 ~dl~~l~~ 860 (957)
++|..++-
T Consensus 579 REiakLva 586 (630)
T KOG0742|consen 579 REIAKLVA 586 (630)
T ss_pred HHHHHHHH
Confidence 99999975
No 90
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.83 E-value=1.4e-19 Score=226.50 Aligned_cols=286 Identities=22% Similarity=0.269 Sum_probs=199.3
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEE
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFL 709 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i 709 (957)
..+-.++.++|+++..+++.+.+. .+...+++|+||||||||++|+++|..+ +.+++
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~ 233 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLS-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLL 233 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEE
Confidence 345578899999998777776653 3456779999999999999999999875 66788
Q ss_pred EEeCCCcc--cccccchHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 710 AVKGPELF--SKWVGESEKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 710 ~v~~~~l~--~~~vg~~~~~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
.++...+. .+|.|+.++.++.+|+.+.. ..++||||||+|.+.+.+...+ + ..+.+.|... ..++.+.
T Consensus 234 ~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~----~d~~~~Lk~~----l~~g~i~ 304 (852)
T TIGR03346 234 ALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-A----MDAGNMLKPA----LARGELH 304 (852)
T ss_pred EeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-h----hHHHHHhchh----hhcCceE
Confidence 88877775 46889999999999999865 4589999999999976442221 1 1222333322 2466899
Q ss_pred EEEecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcc-----cHHHHHHHccCCc-----
Q 002169 787 VIAATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV-----NIRELACLSEGCT----- 851 (957)
Q Consensus 787 VI~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~-----~l~~la~~t~g~s----- 851 (957)
+|++|+..+ .+|+++.| ||. .|+++.|+.+++..|++.+..++.....+ .+..++..+.+|-
T Consensus 305 ~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~l 381 (852)
T TIGR03346 305 CIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFL 381 (852)
T ss_pred EEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCC
Confidence 999999774 47999999 996 68999999999999999888776654333 3445555555544
Q ss_pred HHHHHHHHHHHHHHHHHHh-------------------------------------------------------------
Q 002169 852 GADISLICREAAISAIEEN------------------------------------------------------------- 870 (957)
Q Consensus 852 g~dl~~l~~eA~~~a~~~~------------------------------------------------------------- 870 (957)
+.....++.+|+..+..+.
T Consensus 382 PdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (852)
T TIGR03346 382 PDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEK 461 (852)
T ss_pred chHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333444444443211100
Q ss_pred -------------------------------------------------------------cCCCCCCHHHHHHHHHhhC
Q 002169 871 -------------------------------------------------------------LDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 871 -------------------------------------------------------------~~~~~It~~d~~~al~~~~ 889 (957)
.....|+.+|+...+.+..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~t 541 (852)
T TIGR03346 462 AAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWT 541 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhc
Confidence 0012356666666666532
Q ss_pred --CC------chHHHHHHHHHHHHHhcCchhhhhcccccccchhhhhhhhhccCCceEEEeecccCCcccc
Q 002169 890 --PS------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCRFPAGLSQSE 952 (957)
Q Consensus 890 --p~------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~L~~~~k~~~~fl~~~~~~~g~~e 952 (957)
|. +.+.+..+.+.+.+.++++..+... +....+.....|-+..||..+|||.||+|+|||+
T Consensus 542 gip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~--v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~ 610 (852)
T TIGR03346 542 GIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEA--VSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTE 610 (852)
T ss_pred CCCcccccHHHHHHHHHHHHHhhcccCCChHHHHH--HHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHH
Confidence 21 4567778888888888888777544 2333333334466778899999999999999986
No 91
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=7.8e-20 Score=177.11 Aligned_cols=130 Identities=45% Similarity=0.781 Sum_probs=118.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccC-CeEEEEcCccccccCCcCCCch
Q 002169 332 VLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSA-PAVVFIDELDAIAPARKDGGEE 410 (957)
Q Consensus 332 vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~-p~IL~IDEiD~l~~~~~~~~~~ 410 (957)
|||+||||||||++|+++|+.++.+++.+++.++.+.+.++..+.+..+|+.+.... |+||||||+|.+.+..+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999998889999999999999998887 9999999999999887555567
Q ss_pred HHHHHHHHHHHHhhccccC-CCeEEEEecCCCCCchhhhhCCCCcceeeeecC
Q 002169 411 LSQRMVATLLNLMDGVCRT-DGVLVIAATNRPDSIEPALRRPGRLDREIEIAV 462 (957)
Q Consensus 411 ~~~~i~~~Ll~~ld~l~~~-~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~ 462 (957)
....++..|+..++..... .++++|++||.++.++++++| +||+..|+++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 7889999999999998654 569999999999999999998 89999998863
No 92
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=5.7e-20 Score=178.05 Aligned_cols=130 Identities=46% Similarity=0.754 Sum_probs=117.5
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCC-CeEEEEeCCchhhhhcCCCCCC
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANA-PSIIFFDEIDGLAAIRGKESDG 761 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~-p~ILfiDEid~l~~~r~~~~~~ 761 (957)
+||+||||||||++|+++|+.++.+++.++++++.+.+.++..+.++.+|..++... |+||||||+|.+.... ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~--~~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS--QPSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC--STSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc--cccc
Confidence 689999999999999999999999999999999998999999999999999999988 9999999999998877 2334
Q ss_pred CcchHHHHHHHHHHHhccccC-CcEEEEEecCCCCCCChhhhCCCCcceecccCC
Q 002169 762 VSVSDRVMSQLLVELDGLHQR-VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGP 815 (957)
Q Consensus 762 ~~~~~~v~~~LL~~ld~~~~~-~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~ 815 (957)
......++++|+..++..... .+++||++||+++.++++++| +||+..|++|+
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 567788999999999987654 569999999999999999998 89999999874
No 93
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.82 E-value=2.1e-19 Score=224.07 Aligned_cols=170 Identities=23% Similarity=0.340 Sum_probs=133.2
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEE
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLA 710 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~ 710 (957)
.+-.+++++|+++..+++.+.+. .+...+++|+||||||||++|+++|..+ +.+++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 45578899999998777776653 3455679999999999999999999987 678889
Q ss_pred EeCCCcc--cccccchHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 711 VKGPELF--SKWVGESEKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 711 v~~~~l~--~~~vg~~~~~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
++...+. .+|.|++++.++.+|+.+.. ..++||||||+|.+.+.+... ++ ....+.|...+ .++.+.+
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~----~d~~~~lkp~l----~~g~l~~ 310 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GA----MDAGNMLKPAL----ARGELHC 310 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cc----hhHHHHhcchh----hcCCCeE
Confidence 9888876 46889999999999998644 568999999999998664322 11 11223333333 4678999
Q ss_pred EEecCCCCC-----CChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC
Q 002169 788 IAATNRPDK-----IDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS 835 (957)
Q Consensus 788 I~aTN~~~~-----id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~ 835 (957)
|+||+..+. +|+|+.| ||+ .|+++.|+.+++..|++....++...
T Consensus 311 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~ 360 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELH 360 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccC
Confidence 999998874 7999999 997 68899999999999998877665443
No 94
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=8.2e-20 Score=193.74 Aligned_cols=237 Identities=27% Similarity=0.385 Sum_probs=177.0
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcC-CCCCCcceeeCCCCChhhHHHHHHHHHhC---------CcEEEEeC
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIG-TRPPTGILMFGPPGCSKTLMARAVASEAG---------LNFLAVKG 713 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~-~~~~~giLL~GPpGtGKTtlAkaiA~~~~---------~~~i~v~~ 713 (957)
-|+.++--.++|+++.......+...+.--.-. +...+-+||+||||||||+|+||+|..+. .-+++++.
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 478888778899998887654443332111101 22344499999999999999999998862 36789999
Q ss_pred CCcccccccchHHHHHHHHHHHHhC-----CCeEEEEeCCchhhhhcCCCC--CCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKARAN-----APSIIFFDEIDGLAAIRGKES--DGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~~-----~p~ILfiDEid~l~~~r~~~~--~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
..++++|.+++.+.+..+|.+.... .--.++|||+++++..|.... ......-|++|++|++||++....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 9999999999999999999886542 223567999999998884432 334456799999999999999999999
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCC---C--C-------------cccHHHHHHH-c
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPC---S--S-------------DVNIRELACL-S 847 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~---~--~-------------~~~l~~la~~-t 847 (957)
+++|+|-.+.||.|+.. |-|-+.|+++|+...+.+|++..+.++-. . . +.....++.. +
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~ 377 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELST 377 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhh
Confidence 99999999999999999 99999999999999999999987764321 1 0 0011223333 5
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 848 EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 848 ~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
.|.|||-|+.+=- .|..+......|+..+|..|+.
T Consensus 378 ~gLSGRtlrkLP~----Laha~y~~~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 378 VGLSGRTLRKLPL----LAHAEYFRTFTVDLSNFLLALL 412 (423)
T ss_pred cCCccchHhhhhH----HHHHhccCCCccChHHHHHHHH
Confidence 7999998887743 3334444455788888876654
No 95
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=9.7e-20 Score=209.47 Aligned_cols=278 Identities=23% Similarity=0.342 Sum_probs=200.4
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-------
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS------- 718 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~------- 718 (957)
+|..|++++|+++.|++.--.. .|-...+-++|+||||+|||++||.||+.+|..|++++...+..
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 5789999999999999864211 12334445899999999999999999999999999998766533
Q ss_pred --ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-------------cCC
Q 002169 719 --KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------------QRV 783 (957)
Q Consensus 719 --~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-------------~~~ 783 (957)
.|+|....++-+.++++...+| +++|||||.+.. +..++. -++||..||.-. .-.
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~qGDP-------asALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQGDP-------ASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCCCCh-------HHHHHHhcChhhccchhhhccccccchh
Confidence 3999999999999999999999 999999999973 222222 124666665321 234
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc-----CCCCCc-ccHH--HHHHHccCCc----
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-----IPCSSD-VNIR--ELACLSEGCT---- 851 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-----~~~~~~-~~l~--~la~~t~g~s---- 851 (957)
.|++|+|.|..+.|+++|+. |+ ++|.++-+..++..+|.+.|+-. .++..+ +++. .+..+.+.|+
T Consensus 554 kVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaG 630 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAG 630 (906)
T ss_pred heEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHh
Confidence 79999999999999999999 98 59999999999999999988843 333311 2221 1111111111
Q ss_pred ----HHHHHHHHHHHHHHHHHHhc--------CCCCCCHHHHHHHHHh-----hCCCchHHHHHHHHHHHHHhcCchhhh
Q 002169 852 ----GADISLICREAAISAIEENL--------DASRITMQHLKTAIRH-----VQPSEIHSYKELSAKFQRLVHSNAEAD 914 (957)
Q Consensus 852 ----g~dl~~l~~eA~~~a~~~~~--------~~~~It~~d~~~al~~-----~~p~~~~~y~~~~~~~~~~v~~~~~~~ 914 (957)
-+.|..+||.+++.-.+... .....+..+.+++... ..+.....+..-..++++.+..+.+..
T Consensus 631 VRnLqk~iekI~Rk~Al~vv~~~~~~~~~~~~~~~~~~~~~~e~~~~~t~~~~~~~~~~~~i~I~~~nL~d~lG~P~f~~ 710 (906)
T KOG2004|consen 631 VRNLQKQIEKICRKVALKVVEGENSKEESAEKNGRESTEKSIEEAESSTSGADLLPEMPENIEIDESNLQDILGPPVFTS 710 (906)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccCcccccccCCcceeeecHHHHHHHhCCCcccH
Confidence 24566777776665554431 1112333334333311 112234456667788999999999999
Q ss_pred hcccccccchhhhhhhhhccCCceEEEee
Q 002169 915 ESGYQLRPSKSIGSNMWTLIKSISLFLCR 943 (957)
Q Consensus 915 ~~~~~~~~~~~~g~~L~~~~k~~~~fl~~ 943 (957)
...|..+++....++.|+.+++.+.|++.
T Consensus 711 e~~y~~tp~GVvmGLaWT~mGG~~lyvEt 739 (906)
T KOG2004|consen 711 ERMYEVTPPGVVMGLAWTAMGGSTLYVET 739 (906)
T ss_pred HHHhccCCCeeEEEEEEecCCCeEEEEEE
Confidence 99999999999999999999999999984
No 96
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.81 E-value=4.5e-19 Score=183.56 Aligned_cols=193 Identities=25% Similarity=0.339 Sum_probs=133.1
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF 717 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~ 717 (957)
..+.+.+|+|++||++++..+.-++...... -.+..+++||||||+||||||+.||++++.+|..++++.+-
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 3456678999999999999887766532111 23456799999999999999999999999999999987642
Q ss_pred cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc----------------
Q 002169 718 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ---------------- 781 (957)
Q Consensus 718 ~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~---------------- 781 (957)
....+..++.... ...||||||||++. ..+...|+..|+...-
T Consensus 88 ------k~~dl~~il~~l~--~~~ILFIDEIHRln-------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 88 ------KAGDLAAILTNLK--EGDILFIDEIHRLN-------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp ------SCHHHHHHHHT----TT-EEEECTCCC---------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred ------hHHHHHHHHHhcC--CCcEEEEechhhcc-------------HHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 1234445555443 34599999999874 4455668888875320
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHH
Q 002169 782 RVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICR 860 (957)
Q Consensus 782 ~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~ 860 (957)
-...++|+||++...+.++|+. ||.-+..+..++.++..+|++.....+++.-+ ....++|+.+.| ++|=..++++
T Consensus 147 l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred CCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 1257899999999999999999 99888889999999999999998888777643 346788999998 7887777776
Q ss_pred HH
Q 002169 861 EA 862 (957)
Q Consensus 861 eA 862 (957)
.+
T Consensus 224 rv 225 (233)
T PF05496_consen 224 RV 225 (233)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 97
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.77 E-value=5.4e-18 Score=181.95 Aligned_cols=255 Identities=19% Similarity=0.272 Sum_probs=179.9
Q ss_pred cCCccccccCChHHHHHH---HHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc---EEEEeC
Q 002169 640 VPKVKWEDVGGQREVKTQ---LMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---FLAVKG 713 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~---l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~---~i~v~~ 713 (957)
..+.+++|.+||+++..+ |+.+++ ...-..++|+||||||||+||+.||.....+ ||.+++
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ie-------------q~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIE-------------QNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHH-------------cCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 355677888888877643 222232 1234569999999999999999999987665 888776
Q ss_pred CCcccccccchHHHHHHHHHHHHh-----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 788 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~-----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI 788 (957)
..- ..+.+|.+|+.++. ....||||||||++....++ .+|-.++ .+.+++|
T Consensus 199 t~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD-------------~fLP~VE----~G~I~lI 254 (554)
T KOG2028|consen 199 TNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD-------------TFLPHVE----NGDITLI 254 (554)
T ss_pred ccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh-------------cccceec----cCceEEE
Confidence 432 46678999998875 34579999999998654322 2444443 5689999
Q ss_pred Eec--CCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc----------CCC----CCcccHHHHHHHccCCcH
Q 002169 789 AAT--NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK----------IPC----SSDVNIRELACLSEGCTG 852 (957)
Q Consensus 789 ~aT--N~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~----------~~~----~~~~~l~~la~~t~g~sg 852 (957)
+|| |.--.++.||++ |+ +++.+.....+....||.+...- ++- ..+..++.++..++| ..
T Consensus 255 GATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG-Da 330 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG-DA 330 (554)
T ss_pred ecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc-hH
Confidence 887 444568999999 76 36777777888888888774431 111 123447888999998 22
Q ss_pred HHHHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhCCC---chHHHHHHHHHHHHHhcCchhhhhcccccccchhhh
Q 002169 853 ADISLICREAAISAIEEN--LDASRITMQHLKTAIRHVQPS---EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG 927 (957)
Q Consensus 853 ~dl~~l~~eA~~~a~~~~--~~~~~It~~d~~~al~~~~p~---~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g 927 (957)
|-.-+.++.++.+...+. .+...++.+|+++.+++-.-. ..+.+++....|++++++.+..+.+||..|+.....
T Consensus 331 R~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGE 410 (554)
T KOG2028|consen 331 RAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGE 410 (554)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCC
Confidence 222333333333333332 245679999999999875432 456777888999999999999999999999998888
Q ss_pred hhhhhccC
Q 002169 928 SNMWTLIK 935 (957)
Q Consensus 928 ~~L~~~~k 935 (957)
..||-.++
T Consensus 411 dPLYVARR 418 (554)
T KOG2028|consen 411 DPLYVARR 418 (554)
T ss_pred CcHHHHHH
Confidence 88886654
No 98
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.2e-18 Score=184.95 Aligned_cols=182 Identities=29% Similarity=0.350 Sum_probs=145.8
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhhh--hhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---------CcEEEEecc
Q 002169 295 ISKLGGLSKEYAILKDIIISSSVKSTL--SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---------VNLFTVNGP 363 (957)
Q Consensus 295 ~~~i~Gl~~~~~~l~e~i~~~~~~~~~--~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~---------~~~i~i~~~ 363 (957)
|+.+.==...|+.+..++...+.-... ..--+..++-||||||||||||+||+++|+.+. ..++++|+.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 444444445677777776555433111 111245678899999999999999999998873 356899999
Q ss_pred cccccccchhHHHHHHHHHHHhcc---C--CeEEEEcCccccccCCcCC----CchHHHHHHHHHHHHhhccccCCCeEE
Q 002169 364 EVVSQNYGESEQALHEVFDSASQS---A--PAVVFIDELDAIAPARKDG----GEELSQRMVATLLNLMDGVCRTDGVLV 434 (957)
Q Consensus 364 ~l~~~~~ge~e~~i~~vf~~a~~~---~--p~IL~IDEiD~l~~~~~~~----~~~~~~~i~~~Ll~~ld~l~~~~~v~v 434 (957)
.++++|.+|+.+.+..+|+..... . -..++|||+++|+..|... ......|+++++++.||.+.+..++++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999976532 1 2357899999998877432 223567999999999999999999999
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
++|+|-.+.||.|+.. |-|-+.++++|+...+.+|++..+..
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 9999999999999998 99999999999999999999987764
No 99
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.9e-17 Score=174.02 Aligned_cols=218 Identities=23% Similarity=0.306 Sum_probs=170.5
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
..+-.|++.+||+++|+.+.-++.....+ -...-|+|||||||.||||||..||++++.++...+++.+-
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-- 89 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-- 89 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc--
Confidence 44567899999999999999888754333 23456799999999999999999999999999999988763
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc----------------cCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRV 783 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----------------~~~ 783 (957)
....+-.++.....+ +||||||||++.+. +-.-|...|+.+. .-.
T Consensus 90 ----K~gDlaaiLt~Le~~--DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 90 ----KPGDLAAILTNLEEG--DVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred ----ChhhHHHHHhcCCcC--CeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 344555555554444 59999999988532 2223444555431 123
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
..++|+||.+...+...|+. ||.....+..++.++..+|+.+....+.+.-+ ....++|+++.| ++|=...++++.
T Consensus 151 pFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred CeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHH
Confidence 67899999999999999999 99999999999999999999999988877644 346788999998 888888888888
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 863 AISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 863 ~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
-..|.-+. ...|+.+-..+|+....-.
T Consensus 228 RDfa~V~~--~~~I~~~ia~~aL~~L~Vd 254 (332)
T COG2255 228 RDFAQVKG--DGDIDRDIADKALKMLDVD 254 (332)
T ss_pred HHHHHHhc--CCcccHHHHHHHHHHhCcc
Confidence 88887654 6678888888888876654
No 100
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.3e-17 Score=186.26 Aligned_cols=200 Identities=23% Similarity=0.312 Sum_probs=147.7
Q ss_pred cccccCCcHHHHHHHHH-HHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccch
Q 002169 294 DISKLGGLSKEYAILKD-IIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e-~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge 372 (957)
+|+.+.=-.+.|+.|.+ +..+....+.+++.|....+|.|||||||||||+++.|+|++++..++.++-.+...
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~----- 273 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL----- 273 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----
Confidence 45566333445555544 434444458888999999999999999999999999999999999998887665532
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCc-------hHHHHHHHHHHHHhhccccCC--CeEEEEecCCCCC
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGE-------ELSQRMVATLLNLMDGVCRTD--GVLVIAATNRPDS 443 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~-------~~~~~i~~~Ll~~ld~l~~~~--~v~vI~ttN~~~~ 443 (957)
... ++.++-.+.. .+||+|++||.-+.-+..... ....-.+..||+.+|+++... .-+||+|||.++.
T Consensus 274 n~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~Ek 350 (457)
T KOG0743|consen 274 DSD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEK 350 (457)
T ss_pred cHH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhh
Confidence 222 7777766543 469999999977543322211 123356788999999996654 6799999999999
Q ss_pred chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCC-CCCChHHHHHHHHHcCC--CcHHHHHH
Q 002169 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGME-HSLLDSEVEYLSMATHG--FVGADLAA 505 (957)
Q Consensus 444 ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~-~~l~~~~l~~La~~t~g--~~gaDi~~ 505 (957)
|||||.||||+|..|+++.-+.++...+++.++.--. +. ..+.+.+..++ .++||+..
T Consensus 351 LDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 351 LDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred cCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHH
Confidence 9999999999999999999999999999999886643 33 23333333333 47888764
No 101
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.7e-17 Score=180.26 Aligned_cols=177 Identities=29% Similarity=0.469 Sum_probs=138.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccC-CeEEEEcCccccccCCc
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSA-PAVVFIDELDAIAPARK 405 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~-p~IL~IDEiD~l~~~~~ 405 (957)
.|-++|+||||||||||++|+-||...|..+-.+.|.++..- -.+.-..|+++|+++.... .-+|||||.|+++..|.
T Consensus 382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRn 460 (630)
T KOG0742|consen 382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERN 460 (630)
T ss_pred chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhc
Confidence 356889999999999999999999999999998888886442 1355678999999998765 45789999999988875
Q ss_pred CCC-chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCC---
Q 002169 406 DGG-EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEH--- 481 (957)
Q Consensus 406 ~~~-~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~--- 481 (957)
... ++..+..++.||---. .....++++.+||+|..+|-++-. |+|..++|+.|..++|..++..++.++-.
T Consensus 461 ktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~ 536 (630)
T KOG0742|consen 461 KTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPA 536 (630)
T ss_pred hhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcC
Confidence 533 3333344444432211 234568999999999999999988 99999999999999999999988865321
Q ss_pred -------------------C----CChHHHHHHHHHcCCCcHHHHHHHHH
Q 002169 482 -------------------S----LLDSEVEYLSMATHGFVGADLAALCN 508 (957)
Q Consensus 482 -------------------~----l~~~~l~~La~~t~g~~gaDi~~l~~ 508 (957)
. ..+..+...|..|.||+|++|..|+.
T Consensus 537 ~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva 586 (630)
T KOG0742|consen 537 TSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVA 586 (630)
T ss_pred CCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 1 12344677889999999999998864
No 102
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.73 E-value=1.6e-16 Score=197.34 Aligned_cols=202 Identities=22% Similarity=0.278 Sum_probs=143.5
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc--------
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-------- 717 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~-------- 717 (957)
++++|++++|+.+.+.+.+.... +......++|+||||||||++|++||+.++.+|+.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 46889999999999987653211 122334699999999999999999999999999999875542
Q ss_pred -cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc-----c--------cCC
Q 002169 718 -SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL-----H--------QRV 783 (957)
Q Consensus 718 -~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~-----~--------~~~ 783 (957)
..|+|.....+...|..+....| ||||||||.+...... ...+.|+..||.. . ...
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~---------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG---------DPASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC---------CHHHHHHHhcCHHhcCccccccCCceeccC
Confidence 35788888888888888877666 8999999999743211 1234566666531 0 124
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHH-----hcCCCCC---cc---cHHHHHH-HccCCc
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL-----RKIPCSS---DV---NIRELAC-LSEGCT 851 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l-----~~~~~~~---~~---~l~~la~-~t~g~s 851 (957)
++++|+|||..+.++++|++ ||+ +|.|+.|+.+++.+|++.++ ...++.. .+ .+..+++ .+..+.
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g 539 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAG 539 (775)
T ss_pred CEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcC
Confidence 78999999999999999999 995 88999999999999998876 2233321 12 2344443 233334
Q ss_pred HHHHHHHHHHHHHHHH
Q 002169 852 GADISLICREAAISAI 867 (957)
Q Consensus 852 g~dl~~l~~eA~~~a~ 867 (957)
.|+++..+...+..+.
T Consensus 540 ~R~l~r~i~~~~~~~~ 555 (775)
T TIGR00763 540 VRNLERQIEKICRKAA 555 (775)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 5666655555444443
No 103
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.73 E-value=5.1e-17 Score=168.42 Aligned_cols=181 Identities=23% Similarity=0.334 Sum_probs=126.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
.+.+++++.|+++.++.++-++...... -.+..++|||||||+||||||+.+|++++.++..++++.+-. .
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--~ 89 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--A 89 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--C
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--H
Confidence 4567899999999999988776554222 134568999999999999999999999999999988865422 1
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-----c-----------CCCeEE
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-----R-----------TDGVLV 434 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-----~-----------~~~v~v 434 (957)
++ +..++.... ...||||||||.+. +.....|+..|+... . -..+++
T Consensus 90 ~d----l~~il~~l~--~~~ILFIDEIHRln-----------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 90 GD----LAAILTNLK--EGDILFIDEIHRLN-----------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HH----HHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred HH----HHHHHHhcC--CCcEEEEechhhcc-----------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 22 333443332 35699999999984 445566888887641 1 135899
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCc
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 499 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ 499 (957)
|++|++...+.+.|+. ||.-...+..++.++..+|++.....++..+++....++|.++.|-.
T Consensus 153 igATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp EEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSH
T ss_pred eeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCh
Confidence 9999999999999999 99887889999999999999998888999999999999999988753
No 104
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.1e-17 Score=192.09 Aligned_cols=255 Identities=20% Similarity=0.276 Sum_probs=175.3
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-------
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS------- 718 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~------- 718 (957)
.|..|++++|+++.|.+.-.... +--...-++|+||||+|||+|++.||+.++..|++++...+..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 56789999999999988642111 1112233889999999999999999999999999998766533
Q ss_pred --ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-------------cCC
Q 002169 719 --KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------------QRV 783 (957)
Q Consensus 719 --~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-------------~~~ 783 (957)
.|+|.....+-+-+.+|...+| +++|||||.+........ -++||..||.-. ...
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP---------aSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP---------ASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh---------HHHHHhhcCHhhcCchhhccccCccchh
Confidence 3999999999999999999999 999999999965432221 135666666321 234
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHH-----hcCCCCCc-c--cHHHHHHHccCCc----
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL-----RKIPCSSD-V--NIRELACLSEGCT---- 851 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l-----~~~~~~~~-~--~l~~la~~t~g~s---- 851 (957)
+|++|+|+|..+.|+.+|+. |+ ++|.+.-++.++..+|.+.|+ ++.++..+ + .-+.+-.+...|+
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAG 542 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAG 542 (782)
T ss_pred heEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhh
Confidence 79999999999999999999 98 599999999999999999887 33444422 1 1122222222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHhcCchhhhhcccccccchhh
Q 002169 852 ----GADISLICREAAISAIEENLDAS-RITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSI 926 (957)
Q Consensus 852 ----g~dl~~l~~eA~~~a~~~~~~~~-~It~~d~~~al~~~~p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 926 (957)
-++|..+||.++..-+....... .|+.. .+++.+..+.+.....+.-..+...
T Consensus 543 VR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~----------------------~l~~yLG~~~f~~~~~~~~~~vGvV 600 (782)
T COG0466 543 VRNLEREIAKICRKAAKKILLKKEKSIVKIDEK----------------------NLKKYLGVPVFRYGKAEEEDQVGVV 600 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCcccceeeCHH----------------------HHHHHhCCcccCccccccCCCCeeE
Confidence 14445555544443333221111 22322 3444444444444444445555566
Q ss_pred hhhhhhccCCceEEEe
Q 002169 927 GSNMWTLIKSISLFLC 942 (957)
Q Consensus 927 g~~L~~~~k~~~~fl~ 942 (957)
-+..|+..++..++++
T Consensus 601 tGLAWT~vGGd~L~IE 616 (782)
T COG0466 601 TGLAWTEVGGDLLTIE 616 (782)
T ss_pred eeeeeecCCceEEEEE
Confidence 6789999999999998
No 105
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.72 E-value=3.8e-16 Score=176.05 Aligned_cols=218 Identities=23% Similarity=0.296 Sum_probs=161.5
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
..+.+|++++|++++++.+..++..... .-.++.+++||||||||||++|+++|++++..+..++++.+.
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~-- 88 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE-- 88 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc--
Confidence 3455899999999999999888753211 124567899999999999999999999999988877765432
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc----------------cCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRV 783 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----------------~~~ 783 (957)
....+..++... ..++||||||+|.+... ..+.+...|+... ...
T Consensus 89 ----~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 89 ----KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred ----ChHHHHHHHHhc--ccCCEEEEecHhhcchH-------------HHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 123344444443 34679999999987421 1122333343221 112
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
++.+|++||++..++++|++ ||...+.+++|+.+++.+|++......++.- +..+..+++.+.| +.+.+..+++.+
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~ 226 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRV 226 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHH
Confidence 47889999999999999988 9988999999999999999999888766543 3347888999998 568888888887
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 863 AISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 863 ~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
...+..+. ...|+.+++..++......
T Consensus 227 ~~~a~~~~--~~~I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 227 RDFAQVKG--DGVITKEIADKALDMLGVD 253 (328)
T ss_pred HHHHHHcC--CCCCCHHHHHHHHHHhCCC
Confidence 77766543 4579999999999876544
No 106
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.72 E-value=2.6e-16 Score=182.69 Aligned_cols=238 Identities=24% Similarity=0.346 Sum_probs=173.8
Q ss_pred cCCccccccCChHHHHHH---HHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 640 VPKVKWEDVGGQREVKTQ---LMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~---l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
..+.++++++|++++... +.+++.. ....+++|+||||||||++|+++|+.++.+|+.+++...
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 455678999999999665 7666642 234579999999999999999999999999999987542
Q ss_pred ccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecC
Q 002169 717 FSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN 792 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN 792 (957)
....++.+++.+. .+...||||||+|.+.. ...+.|+..++. ..+++|++|+
T Consensus 73 -------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-------------~~q~~LL~~le~----~~iilI~att 128 (413)
T PRK13342 73 -------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-------------AQQDALLPHVED----GTITLIGATT 128 (413)
T ss_pred -------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-------------HHHHHHHHHhhc----CcEEEEEeCC
Confidence 3445666776664 23567999999998742 334566666663 4567777653
Q ss_pred --CCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC--CC--CCcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 793 --RPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI--PC--SSDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 793 --~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~--~~--~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
....+++++++ || .++.+++++.++...+++..+... ++ ..+..+..+++.+.| +.+.+.++++.++..
T Consensus 129 ~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~- 203 (413)
T PRK13342 129 ENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG- 203 (413)
T ss_pred CChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc-
Confidence 34578999999 88 688999999999999998877542 21 123346677887766 666666666665533
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhCCC---chHHHHHHHHHHHHHhcCchhhhhcccccccchh
Q 002169 867 IEENLDASRITMQHLKTAIRHVQPS---EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKS 925 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~~p~---~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 925 (957)
...|+.+++.+++...... ..+.+.++...|.+++++++.++.+++..+....
T Consensus 204 ------~~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~ 259 (413)
T PRK13342 204 ------VDSITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEA 259 (413)
T ss_pred ------cCCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 3469999999988764322 3356788888899999999999888777775543
No 107
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.71 E-value=6.8e-16 Score=172.24 Aligned_cols=212 Identities=23% Similarity=0.278 Sum_probs=154.0
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccc
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGE 723 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~ 723 (957)
+|++++|++++++.|..++..... ....+.+++|+||||||||++|+++|++++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 689999999999999888753211 1234567999999999999999999999998877766543321
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc----------------cCCcEEE
Q 002169 724 SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRVNVTV 787 (957)
Q Consensus 724 ~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----------------~~~~v~V 787 (957)
...+...+... ..+.+|||||+|.+.+. ....|+..|+... ...++.+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~-------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA-------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH-------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 12233333332 34569999999987432 1223444443221 1124789
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++||++..+++++++ ||...+.+++|+.+++.++++......+.. .+..++.+++.+.| +.+.+..+++.+...|
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a 209 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFA 209 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHH
Confidence 9999999999999998 998889999999999999999888765544 23446788999998 4578888888777666
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhC
Q 002169 867 IEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~~ 889 (957)
.... ...|+.+++..++..+.
T Consensus 210 ~~~~--~~~it~~~v~~~l~~l~ 230 (305)
T TIGR00635 210 QVRG--QKIINRDIALKALEMLM 230 (305)
T ss_pred HHcC--CCCcCHHHHHHHHHHhC
Confidence 5443 45699999999988753
No 108
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.2e-16 Score=191.07 Aligned_cols=161 Identities=24% Similarity=0.349 Sum_probs=113.0
Q ss_pred cccCCc-HHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEeccc
Q 002169 296 SKLGGL-SKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGPE 364 (957)
Q Consensus 296 ~~i~Gl-~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~~~ 364 (957)
+.+.|- ++.++.+-++ +..+..++-+|+|.||+|||.++.-+|+.. +..++.++...
T Consensus 186 dPvigr~deeirRvi~i------------L~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~ 253 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEI------------LSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGS 253 (898)
T ss_pred CCccCCchHHHHHHHHH------------HhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhh
Confidence 344444 7777777776 333445788999999999999999999765 23455555544
Q ss_pred ccc--cccchhHHHHHHHHHHHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 365 VVS--QNYGESEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 365 l~~--~~~ge~e~~i~~vf~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
+.. ++.|+.+.+++.+...+. .....||||||++-+.......+ ... ..+.+.....++++.+|+||...
T Consensus 254 l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~---~~d----~~nlLkp~L~rg~l~~IGatT~e 326 (898)
T KOG1051|consen 254 LVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG---AID----AANLLKPLLARGGLWCIGATTLE 326 (898)
T ss_pred cccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch---HHH----HHHhhHHHHhcCCeEEEecccHH
Confidence 443 467899999999999988 44567899999999987654421 111 22222222345669999988632
Q ss_pred C-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC
Q 002169 442 D-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 442 ~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
. +-+|++.| ||+. +.++.|+.++...||......
T Consensus 327 ~Y~k~iekdPalEr--rw~l-~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 327 TYRKCIEKDPALER--RWQL-VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHHHHhhCcchhh--Ccce-eEeccCcccchhhhhhhhhhh
Confidence 2 45699999 9976 779999998888888776555
No 109
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=6e-16 Score=180.76 Aligned_cols=233 Identities=15% Similarity=0.175 Sum_probs=163.9
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------- 706 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------- 706 (957)
...++.+|++++|++++++.|..++.. -+.+.++||+|||||||||+|+++|+.++.
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKK------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 345677899999999999988887753 234566999999999999999999998764
Q ss_pred -------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 707 -------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 707 -------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
.++.+++..- .....+|.+.+.+.. ....||||||+|.+. ...+
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-------------~~a~ 134 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-------------KEAF 134 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-------------HHHH
Confidence 3555554321 123455666665542 234699999999873 2345
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~ 848 (957)
+.|+..|+.. ...+++|++|+.+..+++++++ |+ .++.|.+++.++...+++..+...++. .+..+..+++.+.
T Consensus 135 ~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 135 NALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 6788888753 3467888888888899999998 87 489999999999999999888765543 3345777888887
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHhcCchhhhhccccc
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQL 920 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~ 920 (957)
| +.|++.+.++.++..+ ...||.+++.+++..... +....|.+++.+.+.....++..
T Consensus 210 G-dlR~aln~Le~l~~~~------~~~It~e~V~~~l~~~~~-------~~i~~li~si~~~d~~~Al~~l~ 267 (472)
T PRK14962 210 G-GLRDALTMLEQVWKFS------EGKITLETVHEALGLIPI-------EVVRDYINAIFNGDVKRVFTVLD 267 (472)
T ss_pred C-CHHHHHHHHHHHHHhc------CCCCCHHHHHHHHcCCCH-------HHHHHHHHHHHcCCHHHHHHHHH
Confidence 6 5566656555433221 234999999988865432 44455566666666665554433
No 110
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2.9e-16 Score=180.73 Aligned_cols=224 Identities=18% Similarity=0.206 Sum_probs=161.8
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
...+.+|++++|+++++..|..++.. -+.+..+||+||+||||||+|+++|+.++..
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKS------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 44567899999999999998888753 2234558999999999999999999988652
Q ss_pred -------------EEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 708 -------------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 708 -------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
++.+++.. ......+|.+.+.+. .+...|+||||+|.+ ....++
T Consensus 79 ~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-------------s~~A~N 139 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-------------TDQSFN 139 (484)
T ss_pred cHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-------------CHHHHH
Confidence 33333321 112345566655544 344579999999977 345678
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
+||..|+. ...++++|++|+.++.|.+++++ || ..+.|..++.++..+.++..+.+.++. .+..+..+++.++|
T Consensus 140 ALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 140 ALLKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG 214 (484)
T ss_pred HHHHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 89999984 34689999999999999999999 88 478898899888888888888776654 34567888999998
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHhcCchh
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAE 912 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~~~~~y~~~~~~~~~~v~~~~~ 912 (957)
+.||..+++..+...+ ...|+.+++.+.+.-. . ......|.+.+++.+.
T Consensus 215 -d~RdAL~lLeq~i~~~------~~~it~~~V~~~lg~~------~-~~~~~~l~~si~~~d~ 263 (484)
T PRK14956 215 -SVRDMLSFMEQAIVFT------DSKLTGVKIRKMIGYH------G-IEFLTSFIKSLIDPDN 263 (484)
T ss_pred -hHHHHHHHHHHHHHhC------CCCcCHHHHHHHhCCC------C-HHHHHHHHHHHHcCCc
Confidence 7788888877655321 3358888887776321 2 3333445556666544
No 111
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.2e-15 Score=181.29 Aligned_cols=190 Identities=19% Similarity=0.225 Sum_probs=146.4
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
+....+|++|+|++++++.|..++.. -+.+..+||+||+||||||+|++||+.+++
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 45667899999999999999988753 234556899999999999999999998764
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.++..+ ......+|.+++.+.. ....|+||||+|.| +...++
T Consensus 77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-------------T~~A~N 137 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-------------TNHAFN 137 (830)
T ss_pred HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-------------CHHHHH
Confidence 233443321 1234456777776643 33579999999977 345577
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.||+.|+.. ..++.+|++||+++.|.+.+++ || ..|.|..++.++..+.|+..+.+.++. ++..+..+++.++|
T Consensus 138 ALLKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G 212 (830)
T PRK07003 138 AMLKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG 212 (830)
T ss_pred HHHHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899998853 4578999999999999999999 88 689999999999999999888766654 34457888899998
Q ss_pred CcHHHHHHHHHHHHHH
Q 002169 850 CTGADISLICREAAIS 865 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~ 865 (957)
+.|+..+++.++...
T Consensus 213 -smRdALsLLdQAia~ 227 (830)
T PRK07003 213 -SMRDALSLTDQAIAY 227 (830)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 788888887776643
No 112
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.68 E-value=7e-16 Score=187.80 Aligned_cols=246 Identities=18% Similarity=0.237 Sum_probs=171.8
Q ss_pred cCCccccccCChHHHHH---HHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 640 VPKVKWEDVGGQREVKT---QLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~---~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
..+.++++++|++++.. .+++.+.. ....+++||||||||||++|+++|+..+.+|+.+++...
T Consensus 22 ~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred cCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 45567899999999885 44444431 233579999999999999999999999999988876431
Q ss_pred ccccccchHHHHHHHHHHHH-----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 717 FSKWVGESEKAVRSLFAKAR-----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~-----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
..+.++..++.+. .....+|||||+|.+.. ...+.|+..++ ...+++|++|
T Consensus 89 -------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-------------~qQdaLL~~lE----~g~IiLI~aT 144 (725)
T PRK13341 89 -------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-------------AQQDALLPWVE----NGTITLIGAT 144 (725)
T ss_pred -------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-------------HHHHHHHHHhc----CceEEEEEec
Confidence 1223444444442 13456999999998742 22345666665 3467777766
Q ss_pred CC--CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc-------CCCC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 002169 792 NR--PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-------IPCS-SDVNIRELACLSEGCTGADISLICRE 861 (957)
Q Consensus 792 N~--~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-------~~~~-~~~~l~~la~~t~g~sg~dl~~l~~e 861 (957)
+. ...+++++++ |+ .++.+++++.+++..+++..+.. .++. .+..+..|++.+.| +.|++.++++.
T Consensus 145 Tenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~ 220 (725)
T PRK13341 145 TENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALEL 220 (725)
T ss_pred CCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 43 3468899998 65 47899999999999999988862 2222 23346778888876 67888888887
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhhCC---CchHHHHHHHHHHHHHhcCchhhhhcccccccchhh
Q 002169 862 AAISAIEENLDASRITMQHLKTAIRHVQP---SEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSI 926 (957)
Q Consensus 862 A~~~a~~~~~~~~~It~~d~~~al~~~~p---~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 926 (957)
++..+.........|+.+++++++..... ...+.+.+....|.+++++++.++.++|..++....
T Consensus 221 a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~G 288 (725)
T PRK13341 221 AVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAG 288 (725)
T ss_pred HHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 66433222212234888888888876332 123456678889999999999999999988877544
No 113
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.68 E-value=1e-15 Score=190.30 Aligned_cols=203 Identities=22% Similarity=0.256 Sum_probs=148.6
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc---------c
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV---------S 367 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~---------~ 367 (957)
++.|++++++.|.+++...... +-..+.+++|+||||||||++|+++|+.++.+++.+++..+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 5889999999999987655322 112345799999999999999999999999999988765432 2
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc-------------ccCCCeEE
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-------------CRTDGVLV 434 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l-------------~~~~~v~v 434 (957)
.|.|.....+...|..+....| ||||||+|.+.+..... ..+.|++.||.. ....++++
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 4667777777888887766555 89999999998643221 134566666531 11257899
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHc-----C-----CCCCCChHHHHHHHHH-cCCCcHHHH
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLS-----G-----MEHSLLDSEVEYLSMA-THGFVGADL 503 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~-----~-----~~~~l~~~~l~~La~~-t~g~~gaDi 503 (957)
|+|||.++.+++++++ ||+ .|+|+.|+.+++.+|++.++. . ....+++..+..+++. +..+..++|
T Consensus 467 I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l 543 (775)
T TIGR00763 467 IATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNL 543 (775)
T ss_pred EEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHH
Confidence 9999999999999999 995 689999999999999987752 1 1345678888888774 444555666
Q ss_pred HHHHHHHHHHHHH
Q 002169 504 AALCNEAALVCLR 516 (957)
Q Consensus 504 ~~l~~~A~~~a~r 516 (957)
+..+......+.+
T Consensus 544 ~r~i~~~~~~~~~ 556 (775)
T TIGR00763 544 ERQIEKICRKAAV 556 (775)
T ss_pred HHHHHHHHHHHHH
Confidence 6655554444433
No 114
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.1e-15 Score=179.51 Aligned_cols=189 Identities=20% Similarity=0.244 Sum_probs=145.6
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
+....+|++|+|++++++.|.+++.. -+.+..+||+||+||||||+|++||+.+++
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 45667899999999999999988863 234556899999999999999999998865
Q ss_pred -----------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcch
Q 002169 707 -----------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVS 765 (957)
Q Consensus 707 -----------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~ 765 (957)
.++.++... ......+|.+++.+.. +...|+||||+|.|.
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------- 137 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------- 137 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-------------
Confidence 233333321 1234556777766542 345799999999773
Q ss_pred HHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHH
Q 002169 766 DRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELA 844 (957)
Q Consensus 766 ~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la 844 (957)
....|.||+.|+. ...++++|++||.++.|.+.+++ || ..+.|..++.++..+.++..+.+.++..+ ..+..++
T Consensus 138 ~~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA 212 (700)
T PRK12323 138 NHAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLA 212 (700)
T ss_pred HHHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4567889999885 35578999999999999999999 88 68999999999999888888776655433 3467788
Q ss_pred HHccCCcHHHHHHHHHHHHH
Q 002169 845 CLSEGCTGADISLICREAAI 864 (957)
Q Consensus 845 ~~t~g~sg~dl~~l~~eA~~ 864 (957)
+.+.| +.++..+++.++..
T Consensus 213 ~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 213 QAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHcCC-CHHHHHHHHHHHHH
Confidence 89888 88888888876654
No 115
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=3.8e-15 Score=175.47 Aligned_cols=205 Identities=19% Similarity=0.242 Sum_probs=154.1
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
..++.+|++|+|++.+++.|..++.. -+.+..+||+||+|||||++|+++|+.+++
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 45667899999999999999888852 244567899999999999999999998764
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.+++++- .....+|.+++.+.. +...|+||||+|.|. ....+
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-------------~~A~N 136 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-------------THSFN 136 (702)
T ss_pred HHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-------------HHHHH
Confidence 3445544321 134567777766532 345799999999773 34567
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+.+|++|+.+..+.+.+++ |+ ..+.|.+++.++..+.++..+.+.++.. +..+..+++.+.|
T Consensus 137 ALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G 211 (702)
T PRK14960 137 ALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG 211 (702)
T ss_pred HHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888888853 4577888999999999999987 87 5889999999999999988887766543 3457788888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
+.|++.+++..+... ....|+.+++...+.
T Consensus 212 -dLRdALnLLDQaIay------g~g~IT~edV~~lLG 241 (702)
T PRK14960 212 -SLRDALSLTDQAIAY------GQGAVHHQDVKEMLG 241 (702)
T ss_pred -CHHHHHHHHHHHHHh------cCCCcCHHHHHHHhc
Confidence 788888887766532 234577777766544
No 116
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=9.1e-15 Score=176.87 Aligned_cols=188 Identities=20% Similarity=0.231 Sum_probs=141.8
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcE----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF---------- 708 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~---------- 708 (957)
+.++.+|++|+|++++++.|+.++.. -+.+..+||+|||||||||+|+++|+.++...
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQ------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 45667899999999999999888752 13455579999999999999999999986531
Q ss_pred --------------EEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 709 --------------LAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 709 --------------i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
+.+++.+ ......+|.+.+.+. .+...|+||||+|.| ....++
T Consensus 77 ~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-------------T~eAqN 137 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-------------SRSSFN 137 (944)
T ss_pred hHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-------------CHHHHH
Confidence 1222211 012344666666554 234569999999977 456778
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.||..|+. ...++++|++|+.+..|.+.+++ |+ .++.|++++.++..+.++..+...++. .+..+..+++.+.|
T Consensus 138 ALLKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G 212 (944)
T PRK14949 138 ALLKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG 212 (944)
T ss_pred HHHHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 89999985 34578888899999999999998 87 588999999999988888877664443 23457788889988
Q ss_pred CcHHHHHHHHHHHH
Q 002169 850 CTGADISLICREAA 863 (957)
Q Consensus 850 ~sg~dl~~l~~eA~ 863 (957)
+.|++.++|..+.
T Consensus 213 -d~R~ALnLLdQal 225 (944)
T PRK14949 213 -SMRDALSLTDQAI 225 (944)
T ss_pred -CHHHHHHHHHHHH
Confidence 7888888887666
No 117
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.64 E-value=9e-15 Score=164.94 Aligned_cols=194 Identities=22% Similarity=0.278 Sum_probs=145.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
+.+|+++.|.++.++.+..++...... -.++.+++|+||||||||++|+++|++++..+..++++.+..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~---- 89 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK---- 89 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC----
Confidence 346789999999999999887543221 235678999999999999999999999999887777654321
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc----------------cCCCeEEE
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVI 435 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~----------------~~~~v~vI 435 (957)
...+..++... ..++||||||+|.+... ....|...|+... .-.++++|
T Consensus 90 --~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-----------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 90 --PGDLAAILTNL--EEGDVLFIDEIHRLSPV-----------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred --hHHHHHHHHhc--ccCCEEEEecHhhcchH-----------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 22334444433 34679999999988531 1122444444321 11347899
Q ss_pred EecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 436 AATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 436 ~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
++||++..+++++++ ||...+.++.|+.+++.+|++......+..+++..++.++..+.|.. +.+..+++.+...+
T Consensus 155 ~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a 230 (328)
T PRK00080 155 GATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFA 230 (328)
T ss_pred eecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHH
Confidence 999999999999998 99888999999999999999999998888899999999999998865 55555555544433
No 118
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.64 E-value=3.2e-15 Score=157.36 Aligned_cols=180 Identities=24% Similarity=0.326 Sum_probs=146.3
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
+..|++..|.+++|+.|+=.|.....+ -....|+||+||||.||||||+.+|+++|.++-..+|+-+..
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK---- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK---- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC----
Confidence 456788999999999999888766443 134679999999999999999999999999999888877632
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc----------------cCCCeEEE
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVI 435 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~----------------~~~~v~vI 435 (957)
...+-.++.....+ +||||||||.+.+.. -..|...|+.++ .-..+++|
T Consensus 91 --~gDlaaiLt~Le~~--DVLFIDEIHrl~~~v-----------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 91 --PGDLAAILTNLEEG--DVLFIDEIHRLSPAV-----------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred --hhhHHHHHhcCCcC--CeEEEehhhhcChhH-----------HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 23344455554444 699999999996532 334677777641 12458999
Q ss_pred EecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCc
Q 002169 436 AATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 499 (957)
Q Consensus 436 ~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ 499 (957)
++|.+...+...|+. ||.....+..++.++..+|+......+...+++.....+|+++.|--
T Consensus 156 GATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP 217 (332)
T COG2255 156 GATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP 217 (332)
T ss_pred eeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc
Confidence 999999999999998 99999999999999999999999999999999999999999988754
No 119
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=1.3e-14 Score=173.56 Aligned_cols=189 Identities=20% Similarity=0.249 Sum_probs=144.0
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
...+.+|++|+|++.+++.|...+.. -+.+..+||+||+||||||+|+++|+.++..
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDL------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 34567899999999999999888753 2345558999999999999999999987652
Q ss_pred -------------EEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 708 -------------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 708 -------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
++.+++..- .....+|.+.+.+. .+...|+||||+|.| ....++
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-------------s~~a~N 137 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFN 137 (647)
T ss_pred HHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-------------CHHHHH
Confidence 344443220 12345666666543 234579999999977 345678
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g 849 (957)
.||..|+. ...++.+|++|++++.|.+.+++ || ..++|..++.++....++..+...++.. +..+..+++.+.|
T Consensus 138 ALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G 212 (647)
T PRK07994 138 ALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG 212 (647)
T ss_pred HHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 89999985 35578899999999999999998 87 6899999999999999988887655543 3457788889888
Q ss_pred CcHHHHHHHHHHHHH
Q 002169 850 CTGADISLICREAAI 864 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~ 864 (957)
+.|++.+++..+..
T Consensus 213 -s~R~Al~lldqaia 226 (647)
T PRK07994 213 -SMRDALSLTDQAIA 226 (647)
T ss_pred -CHHHHHHHHHHHHH
Confidence 78888888876553
No 120
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.63 E-value=4e-15 Score=177.19 Aligned_cols=214 Identities=24% Similarity=0.352 Sum_probs=150.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcE
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNF 708 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~ 708 (957)
..++.+|++++|++..++.++..+.. ..+.++||+||||||||++|++++..+ +.+|
T Consensus 58 ~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 58 KTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred hhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 34678899999999999888765421 235689999999999999999998652 3689
Q ss_pred EEEeCCCc-------ccccccchH----------------HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcch
Q 002169 709 LAVKGPEL-------FSKWVGESE----------------KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVS 765 (957)
Q Consensus 709 i~v~~~~l-------~~~~vg~~~----------------~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~ 765 (957)
+.+++... .....+... ......+.+|.. .+||||||+.+ .
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~g---G~L~IdEI~~L-------------~ 188 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHG---GVLFIDEIGEL-------------H 188 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCC---cEEEEechhhC-------------C
Confidence 99987531 111111000 001123344433 49999999977 3
Q ss_pred HHHHHHHHHHHhccc--------------------------cCCcEEEEEe-cCCCCCCChhhhCCCCcceecccCCCCH
Q 002169 766 DRVMSQLLVELDGLH--------------------------QRVNVTVIAA-TNRPDKIDPALLRPGRFDRLLYVGPPNE 818 (957)
Q Consensus 766 ~~v~~~LL~~ld~~~--------------------------~~~~v~VI~a-TN~~~~id~aLlr~gRfd~~i~~~~P~~ 818 (957)
...++.|+..|+... ...++.+|++ |+.++.+++++++ ||. .++|++++.
T Consensus 189 ~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~ 265 (531)
T TIGR02902 189 PVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLD 265 (531)
T ss_pred HHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCH
Confidence 445666777665310 0124555554 5789999999999 884 778889999
Q ss_pred HHHHHHHHHHHhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 819 TDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 819 ~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
+++.+|++..+++.++.- +..++.++..+. ++|++.++++.|+..|..+. ...|+.+|++.++..-
T Consensus 266 eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~--~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 266 EEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG--RKRILAEDIEWVAENG 332 (531)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC--CcEEcHHHHHHHhCCc
Confidence 999999999998876542 233555565554 78999999999998887654 5679999999998743
No 121
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=7.9e-15 Score=173.13 Aligned_cols=208 Identities=17% Similarity=0.203 Sum_probs=155.1
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
...+.+|+||+|++++++.|..++.. -+.+..+||+||+|||||++|+++|+.++..
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 45667899999999999999988853 2345568999999999999999999988542
Q ss_pred -------------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 708 -------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 708 -------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
++.+++.. ......+|.+++.+.. +...|+||||+|.+. ...++
T Consensus 77 ~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-------------~~a~n 137 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-------------GHSFN 137 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-------------HHHHH
Confidence 45555432 1234457777766542 334699999999773 34577
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+.+|++|+++..+.+.+++ |+ ..+.|..++..+....++..+.+.++. .+..+..+++.+.|
T Consensus 138 aLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G 212 (509)
T PRK14958 138 ALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG 212 (509)
T ss_pred HHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999854 4468888999999999989988 87 578899888888888888888776654 33457778888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
+.+++.+++..++.. ....||.+++.+.+....
T Consensus 213 -slR~al~lLdq~ia~------~~~~It~~~V~~~lg~~~ 245 (509)
T PRK14958 213 -SVRDALSLLDQSIAY------GNGKVLIADVKTMLGTIE 245 (509)
T ss_pred -cHHHHHHHHHHHHhc------CCCCcCHHHHHHHHCCCC
Confidence 788888888776533 134577777776655433
No 122
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.6e-14 Score=164.81 Aligned_cols=206 Identities=17% Similarity=0.226 Sum_probs=151.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
...+.+|++|+|++++++.++.++.. -+.+..++|+||+|||||++|+++|+.+...
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSL------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHc------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 44667899999999999999888752 2345568999999999999999999987532
Q ss_pred -------------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 708 -------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 708 -------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
++.+++.. ......++.+++.+.. ....|++|||+|.+. ...++
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-------------~~a~n 137 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-------------RHSFN 137 (363)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-------------HHHHH
Confidence 22232211 1233456777666542 234699999999762 34567
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+.+|++|+.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.+.. .+..+..++..+.|
T Consensus 138 aLLk~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G 212 (363)
T PRK14961 138 ALLKTLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG 212 (363)
T ss_pred HHHHHHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 788888853 4467888888888899999988 87 588999999999999999888876643 33456778888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 887 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~ 887 (957)
+.+++.++++.++.. ....|+.+++.+++..
T Consensus 213 -~~R~al~~l~~~~~~------~~~~It~~~v~~~l~~ 243 (363)
T PRK14961 213 -SMRDALNLLEHAINL------GKGNINIKNVTDMLGL 243 (363)
T ss_pred -CHHHHHHHHHHHHHh------cCCCCCHHHHHHHHCC
Confidence 788888888766532 2456888888776653
No 123
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.63 E-value=1.2e-14 Score=162.25 Aligned_cols=191 Identities=23% Similarity=0.307 Sum_probs=141.1
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchh
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGES 373 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~ 373 (957)
+|+++.|.+++++.|+.++...... -..+.+++|+||||||||++|+++|++++..+..+.+..+.. .+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~-- 70 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PG-- 70 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--ch--
Confidence 4678999999999999987543221 134568999999999999999999999998877666543321 11
Q ss_pred HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc----------------cCCCeEEEEe
Q 002169 374 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVIAA 437 (957)
Q Consensus 374 e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~----------------~~~~v~vI~t 437 (957)
.+...+... ..+.+|||||+|.+.+. ....|+..|+... ....+++|++
T Consensus 71 --~l~~~l~~~--~~~~vl~iDEi~~l~~~-----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 71 --DLAAILTNL--EEGDVLFIDEIHRLSPA-----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred --hHHHHHHhc--ccCCEEEEehHhhhCHH-----------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 222223222 34679999999988532 1233555554321 1234789999
Q ss_pred cCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 002169 438 TNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 438 tN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
||++..+++++++ ||...+.++.|+.+++.++++..+......+++..++.+++.+.|+. +.+..+++.+...
T Consensus 136 t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~ 208 (305)
T TIGR00635 136 TTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDF 208 (305)
T ss_pred cCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHH
Confidence 9999999999998 99888899999999999999999888888889999999999998865 5556666655433
No 124
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.63 E-value=2e-14 Score=153.05 Aligned_cols=192 Identities=20% Similarity=0.201 Sum_probs=139.0
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------cEEEE
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------NFLAV 711 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------~~i~v 711 (957)
.+..+.+++++.||+.+++.|+.++.. +...++|||||||||||+.|+++|+++.. .+...
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 345677899999999999999988742 34567999999999999999999999865 23334
Q ss_pred eCCCcccccccchHHHHHHHHHHHHhCC----------CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc
Q 002169 712 KGPELFSKWVGESEKAVRSLFAKARANA----------PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ 781 (957)
Q Consensus 712 ~~~~l~~~~vg~~~~~ir~~f~~A~~~~----------p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~ 781 (957)
+.++..+..++. .+ ..-|++..... +.|++|||.|.+ ....+++|.+.|+..
T Consensus 95 naSderGisvvr--~K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-------------tsdaq~aLrr~mE~~-- 156 (346)
T KOG0989|consen 95 NASDERGISVVR--EK-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-------------TSDAQAALRRTMEDF-- 156 (346)
T ss_pred cccccccccchh--hh-hcCHHHHhhccccccCCCCCcceEEEEechhhh-------------hHHHHHHHHHHHhcc--
Confidence 444443332211 11 12233333222 269999999977 455677899999964
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHH
Q 002169 782 RVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICR 860 (957)
Q Consensus 782 ~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~ 860 (957)
...+++|.+||+.+.|...+.+ |+. .+.|+....+.....|+....+.++.-+ ..++.++..++| +-|+....++
T Consensus 157 s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~Ait~Lq 232 (346)
T KOG0989|consen 157 SRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRAITTLQ 232 (346)
T ss_pred ccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHHHHHH
Confidence 4478899999999999999998 884 6778777778888888888877776644 447788888888 5555555565
Q ss_pred HHHH
Q 002169 861 EAAI 864 (957)
Q Consensus 861 eA~~ 864 (957)
.++.
T Consensus 233 sls~ 236 (346)
T KOG0989|consen 233 SLSL 236 (346)
T ss_pred Hhhc
Confidence 5554
No 125
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.7e-14 Score=168.03 Aligned_cols=206 Identities=18% Similarity=0.230 Sum_probs=157.5
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG------------- 705 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~------------- 705 (957)
...+.+|+|++|++.+++.|..++.. -+.+.++||+||+||||||+|+++|+.++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 45667899999999999999887753 24567899999999999999999998653
Q ss_pred -----------CcEEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 706 -----------LNFLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 706 -----------~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
..++.+++++- .+...+|.+++.+... ...|++|||+|.+. ...++
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-------------~~A~N 134 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-------------NSAFN 134 (491)
T ss_pred HHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-------------HHHHH
Confidence 24556655432 2345678888777533 34699999999772 35678
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+.+|++|+.++.+.+.+++ |+ ..+.|..++.++....++..+.+.+.. ++..+..+++.+.|
T Consensus 135 aLLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 135 ALLKTLEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred HHHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999854 4478888999999999999998 87 578999999999999999888776654 33457788888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 887 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~ 887 (957)
+.+++.+++..++..+ ...||.+++.+.+..
T Consensus 210 -slR~alslLdqli~y~------~~~It~e~V~~llg~ 240 (491)
T PRK14964 210 -SMRNALFLLEQAAIYS------NNKISEKSVRDLLGC 240 (491)
T ss_pred -CHHHHHHHHHHHHHhc------CCCCCHHHHHHHHcc
Confidence 8888888888776543 236788887766543
No 126
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.62 E-value=2.6e-14 Score=176.21 Aligned_cols=262 Identities=18% Similarity=0.226 Sum_probs=170.5
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-------
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS------- 718 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~------- 718 (957)
.++.|++++|+.+.+++..... .+......++|+||||||||++++++|+.++.+|++++......
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 4588999999999988763211 12223445999999999999999999999999999998765422
Q ss_pred --ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc-------------ccCC
Q 002169 719 --KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL-------------HQRV 783 (957)
Q Consensus 719 --~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~-------------~~~~ 783 (957)
.|.|.....+...+..+....| ||||||+|.+...... ...+.|+..||.- ....
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCC
Confidence 3677777777777777665566 8999999988643211 1245677777631 1235
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc-----CCCCC---ccc---HHHHHHH-ccCCc
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-----IPCSS---DVN---IRELACL-SEGCT 851 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-----~~~~~---~~~---l~~la~~-t~g~s 851 (957)
++++|+|+|.. .|+++|+. ||. +|.++.++.++..+|.+.++.. .++.. ..+ +..+++. +..+-
T Consensus 465 ~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 465 DVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred ceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 88999999887 59999999 994 8999999999999999988842 22221 112 3334331 22333
Q ss_pred HHHHHHHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHhhCCCchHHHHHHHHHHHHHhcCchhhhhcccccccchhh
Q 002169 852 GADISLICREAAISAIEENL-----DASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSI 926 (957)
Q Consensus 852 g~dl~~l~~eA~~~a~~~~~-----~~~~It~~d~~~al~~~~p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 926 (957)
.|.++..++..+...+.+.+ ....|+.+++.+.+..-+ ...........+...
T Consensus 541 aR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~~----------------------~~~~~~~~~~~~G~~ 598 (784)
T PRK10787 541 VRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQR----------------------FDYGRADNENRVGQV 598 (784)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCCc----------------------cccchhhcCCCceEE
Confidence 57777777665555544432 123456666555554222 111111112233344
Q ss_pred hhhhhhccCCceEEEee-cccCCcc
Q 002169 927 GSNMWTLIKSISLFLCR-FPAGLSQ 950 (957)
Q Consensus 927 g~~L~~~~k~~~~fl~~-~~~~~g~ 950 (957)
-+..|+..++...+++. ...|-||
T Consensus 599 ~gla~t~~gg~~l~iE~~~~~g~g~ 623 (784)
T PRK10787 599 TGLAWTEVGGDLLTIETACVPGKGK 623 (784)
T ss_pred EEeEEeCCCeEEEEEEEEEecCCce
Confidence 46789999998888882 2234444
No 127
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6.8e-15 Score=170.02 Aligned_cols=191 Identities=22% Similarity=0.346 Sum_probs=145.6
Q ss_pred ccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHH
Q 002169 268 VSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLAR 347 (957)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLar 347 (957)
|...++|+......++...++.... ++-.|++++|++|-|+|.....+ |--.++-++|+||||+|||++++
T Consensus 386 wlt~LPWgk~S~En~dl~~Ak~iLd---eDHYgm~dVKeRILEfiAV~kLr------gs~qGkIlCf~GPPGVGKTSI~k 456 (906)
T KOG2004|consen 386 WLTSLPWGKSSTENLDLARAKEILD---EDHYGMEDVKERILEFIAVGKLR------GSVQGKILCFVGPPGVGKTSIAK 456 (906)
T ss_pred HHHhCCCCCCChhhhhHHHHHHhhc---ccccchHHHHHHHHHHHHHHhhc------ccCCCcEEEEeCCCCCCcccHHH
Confidence 3345677766666666555544332 46789999999999998776443 33457889999999999999999
Q ss_pred HHHHHcCCcEEEEecc------ccccc---ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHH
Q 002169 348 LCAHDSGVNLFTVNGP------EVVSQ---NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVAT 418 (957)
Q Consensus 348 alA~~l~~~~i~i~~~------~l~~~---~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~ 418 (957)
.||..++..|+.++-. ++.++ |+|....++-+.++......| +++|||+|.+...-+.... +.
T Consensus 457 SIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPa-------sA 528 (906)
T KOG2004|consen 457 SIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPA-------SA 528 (906)
T ss_pred HHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChH-------HH
Confidence 9999999999887643 44443 788888888888888877766 8999999999743322211 35
Q ss_pred HHHHhhccc-------------cCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC
Q 002169 419 LLNLMDGVC-------------RTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 419 Ll~~ld~l~-------------~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
||++||.-+ .-.+|.||+|.|..+.|+++|+. |+. .|+++-+..++...|.+.|+-.
T Consensus 529 LLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 529 LLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred HHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhh
Confidence 666666421 22469999999999999999998 884 4999999999999999988753
No 128
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=2.1e-14 Score=168.48 Aligned_cols=212 Identities=20% Similarity=0.243 Sum_probs=158.1
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---------- 707 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~---------- 707 (957)
.+..+-+|+|++|++.+++.|..++.. -+.+.++||+||+||||||+|+++|+.++..
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~ 80 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIK 80 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcC
Confidence 345667899999999999998887642 2456789999999999999999999988642
Q ss_pred ------------------EEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcch
Q 002169 708 ------------------FLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVS 765 (957)
Q Consensus 708 ------------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~ 765 (957)
++.+++.. ..+...++.+++.+... ...|++|||+|.+.
T Consensus 81 ~C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------- 141 (507)
T PRK06645 81 TCEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------- 141 (507)
T ss_pred CCCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-------------
Confidence 22222211 12456778888887543 34699999999773
Q ss_pred HHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHH
Q 002169 766 DRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELA 844 (957)
Q Consensus 766 ~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la 844 (957)
...++.|+..|+. ....+++|++|+.++.+.+++++ |+ ..++|..++.++...+++..+++.+...+ ..+..++
T Consensus 142 ~~a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia 216 (507)
T PRK06645 142 KGAFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIA 216 (507)
T ss_pred HHHHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3457788888884 34578888889999999999998 87 57899999999999999999987765433 4577888
Q ss_pred HHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 845 CLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 845 ~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
+.+.| +.+++.++++.++..+-. +...||.+++.+.+....
T Consensus 217 ~~s~G-slR~al~~Ldkai~~~~~---~~~~It~~~V~~llg~~~ 257 (507)
T PRK06645 217 YKSEG-SARDAVSILDQAASMSAK---SDNIISPQVINQMLGLVD 257 (507)
T ss_pred HHcCC-CHHHHHHHHHHHHHhhcc---CCCCcCHHHHHHHHCCCC
Confidence 88887 888888888887655421 123577777776654433
No 129
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=2.5e-14 Score=170.22 Aligned_cols=207 Identities=18% Similarity=0.233 Sum_probs=154.0
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---------- 707 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~---------- 707 (957)
.+..+.+|+||+|++++++.|+.++.. -+.+..+||+||+|||||++|+++|+.+++.
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~ 75 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV 75 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc
Confidence 345677899999999999999988763 2446679999999999999999999987542
Q ss_pred --------------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 708 --------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 708 --------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
++.+++.. +.....+|.+++.+.. ....|+||||+|.+ ....+
T Consensus 76 C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-------------s~~A~ 136 (709)
T PRK08691 76 CQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-------------SKSAF 136 (709)
T ss_pred cHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-------------CHHHH
Confidence 22222211 1234567777776532 34579999999966 34456
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~ 848 (957)
+.||..|+.. ...+.+|++|+++..+.+.+++ || ..+.|+.++.++....++..+.+.++.. +..+..|++.+.
T Consensus 137 NALLKtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~ 211 (709)
T PRK08691 137 NAMLKTLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA 211 (709)
T ss_pred HHHHHHHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC
Confidence 7899999853 4578889999999999999987 87 5788889999999999998888776543 345788888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 887 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~ 887 (957)
| +.|++.+++..+.... ...|+.+++...+..
T Consensus 212 G-slRdAlnLLDqaia~g------~g~It~e~V~~lLG~ 243 (709)
T PRK08691 212 G-SMRDALSLLDQAIALG------SGKVAENDVRQMIGA 243 (709)
T ss_pred C-CHHHHHHHHHHHHHhc------CCCcCHHHHHHHHcc
Confidence 7 8888888888766532 234666666655543
No 130
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=5.4e-14 Score=165.73 Aligned_cols=208 Identities=23% Similarity=0.289 Sum_probs=151.3
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------- 706 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------- 706 (957)
....+.+|+||+|++++++.|..++.. -+.+..+||+|||||||||+|+++|+.+..
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 355677899999999999999888753 234455799999999999999999998743
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.+++.+ ......+|.+.+.+.. ..+.|++|||+|.+ ....++
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-------------s~~a~n 134 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-------------SKSAFN 134 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-------------CHHHHH
Confidence 244444431 1123445665554432 35679999999865 345577
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+++|++||.++.+.+++.+ |+. .+.|++|+.++....++..+.+.++. .+..+..+++.+.|
T Consensus 135 aLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 135 ALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888888853 3467888889999999999998 774 78999999999999999988877665 33457788888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
+.+++.++++.++.. ...||.+++...+....
T Consensus 210 -dlR~aln~Lekl~~~-------~~~It~~~V~~~l~~~~ 241 (504)
T PRK14963 210 -AMRDAESLLERLLAL-------GTPVTRKQVEEALGLPP 241 (504)
T ss_pred -CHHHHHHHHHHHHhc-------CCCCCHHHHHHHHCCCc
Confidence 666777766655321 23577777776654433
No 131
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=5.9e-14 Score=167.89 Aligned_cols=205 Identities=21% Similarity=0.257 Sum_probs=153.0
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------- 706 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------- 706 (957)
....+.+|++++|++++++.++.++.. -+.++.+||+||+|||||++|+++|+.++.
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 345677899999999999999888753 234566999999999999999999988642
Q ss_pred -------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 707 -------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 707 -------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
+++.+++.. +.....+|.+.+.+.. ....|+||||+|.+. ...+
T Consensus 76 C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-------------~~a~ 136 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-------------TGAF 136 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-------------HHHH
Confidence 344454422 2345567888877663 234699999999772 3467
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~ 848 (957)
+.|+..|+.. ...+++|++|+.++.+.+.+++ |+. .+.|+.|+..+....++..+.+.++..+ ..+..++..+.
T Consensus 137 naLLKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~ 211 (559)
T PRK05563 137 NALLKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAE 211 (559)
T ss_pred HHHHHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7899888853 4578888888889999999998 874 7889999999999999998887775433 45677888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
| +.+++.+++..+...+ ...|+.+++...+
T Consensus 212 G-~~R~al~~Ldq~~~~~------~~~It~~~V~~vl 241 (559)
T PRK05563 212 G-GMRDALSILDQAISFG------DGKVTYEDALEVT 241 (559)
T ss_pred C-CHHHHHHHHHHHHHhc------cCCCCHHHHHHHh
Confidence 7 7888888887765432 2346666555443
No 132
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=6.4e-14 Score=167.33 Aligned_cols=204 Identities=18% Similarity=0.243 Sum_probs=150.6
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+-+|++++|++++++.|..++.. -+.+..+||+||+|||||++|+++|+.+++
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 44567899999999999999988753 234556899999999999999999998764
Q ss_pred -----------------cEEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcch
Q 002169 707 -----------------NFLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVS 765 (957)
Q Consensus 707 -----------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~ 765 (957)
.++.+++.. ......+|.+++.+... ...|++|||+|.|.
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------- 137 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------- 137 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-------------
Confidence 233333221 12344677777776432 24699999999773
Q ss_pred HHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHH
Q 002169 766 DRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELA 844 (957)
Q Consensus 766 ~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la 844 (957)
...++.|+..|+.. ...+.+|++|+++..+.+.+++ |+ ..+.|..++.++..+.++..+.+.++..+ ..+..++
T Consensus 138 ~~a~NaLLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La 212 (618)
T PRK14951 138 NTAFNAMLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLA 212 (618)
T ss_pred HHHHHHHHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44577888888853 4578888899999999999988 87 58899999999999999988877666533 3478888
Q ss_pred HHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 845 CLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 845 ~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
+.+.| +.+++.+++.++.... ...|+.+++.+.+
T Consensus 213 ~~s~G-slR~al~lLdq~ia~~------~~~It~~~V~~~L 246 (618)
T PRK14951 213 RAARG-SMRDALSLTDQAIAFG------SGQLQEAAVRQML 246 (618)
T ss_pred HHcCC-CHHHHHHHHHHHHHhc------CCCcCHHHHHHHH
Confidence 88888 7888888876655432 3346666665544
No 133
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.9e-14 Score=165.10 Aligned_cols=226 Identities=22% Similarity=0.317 Sum_probs=159.4
Q ss_pred cccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHH
Q 002169 271 SLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCA 350 (957)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA 350 (957)
.++|........+...++.... .+..|++++|++|-+++........ -.+.-++|+||||+|||+|++.+|
T Consensus 301 ~lPW~~~sk~~~Dl~~a~~iLd---~dHYGLekVKeRIlEyLAV~~l~~~------~kGpILcLVGPPGVGKTSLgkSIA 371 (782)
T COG0466 301 DLPWGKRSKDKLDLKKAEKILD---KDHYGLEKVKERILEYLAVQKLTKK------LKGPILCLVGPPGVGKTSLGKSIA 371 (782)
T ss_pred hCCCccccchhhhHHHHHHHhc---ccccCchhHHHHHHHHHHHHHHhcc------CCCcEEEEECCCCCCchhHHHHHH
Confidence 3455554444444444443332 3578999999999999866544321 235678899999999999999999
Q ss_pred HHcCCcEEEEecc------ccccc---ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 351 HDSGVNLFTVNGP------EVVSQ---NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 351 ~~l~~~~i~i~~~------~l~~~---~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
+.++..|+.++-. ++.++ |+|....++-+-+..|....| +++|||||.+...-..... ++||+
T Consensus 372 ~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLE 443 (782)
T COG0466 372 KALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLE 443 (782)
T ss_pred HHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHh
Confidence 9999999988743 44443 788888888888888877777 9999999999865433322 34666
Q ss_pred Hhhccc-------------cCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC----------
Q 002169 422 LMDGVC-------------RTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG---------- 478 (957)
Q Consensus 422 ~ld~l~-------------~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~---------- 478 (957)
.||.-+ .-.+|+||+|+|..+.|+.+|+. |+. .|++.-++.++..+|.+.|+-.
T Consensus 444 VLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~ 520 (782)
T COG0466 444 VLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKK 520 (782)
T ss_pred hcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCc
Confidence 666421 22469999999999999999998 884 5999999999999999988632
Q ss_pred CCCCCChHHHHHHHHHc---CCCcH--HHHHHHHHHHHHHHHH
Q 002169 479 MEHSLLDSEVEYLSMAT---HGFVG--ADLAALCNEAALVCLR 516 (957)
Q Consensus 479 ~~~~l~~~~l~~La~~t---~g~~g--aDi~~l~~~A~~~a~r 516 (957)
-.+.+++..+..+.+.- .|-.+ +.|..+|+.++..-+.
T Consensus 521 ~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~ 563 (782)
T COG0466 521 GELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILL 563 (782)
T ss_pred cceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 12345666666555431 22222 4466666666554443
No 134
>PRK04195 replication factor C large subunit; Provisional
Probab=99.58 E-value=8.4e-14 Score=164.83 Aligned_cols=208 Identities=21% Similarity=0.285 Sum_probs=147.5
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
...+.++++++|++++++.+.+++.... .-.+++++||+||||||||++|+++|++++.+++.+++++...
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~---------~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWL---------KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 3456789999999999999999885321 1234778999999999999999999999999999999887532
Q ss_pred ccccchHHHHHHHHHHHHh------CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecC
Q 002169 719 KWVGESEKAVRSLFAKARA------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN 792 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~------~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN 792 (957)
...++.++..+.. ..+.||+|||+|.+... .....+++|+..++. .+..+|++||
T Consensus 78 ------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~---------~d~~~~~aL~~~l~~----~~~~iIli~n 138 (482)
T PRK04195 78 ------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN---------EDRGGARAILELIKK----AKQPIILTAN 138 (482)
T ss_pred ------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccc---------cchhHHHHHHHHHHc----CCCCEEEecc
Confidence 2233444333322 25679999999987531 122334566666662 2455778889
Q ss_pred CCCCCCh-hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHh
Q 002169 793 RPDKIDP-ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 793 ~~~~id~-aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
.+..+.+ .+.+ |+ ..|.|+.|+..++..+++..+.+.++. .+..+..+++.+.| |++.+++.....+.
T Consensus 139 ~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~a~--- 208 (482)
T PRK04195 139 DPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAIAE--- 208 (482)
T ss_pred CccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHhc---
Confidence 9888877 5655 54 589999999999999999988776654 23456777777766 88887776554321
Q ss_pred cCCCCCCHHHHHHHH
Q 002169 871 LDASRITMQHLKTAI 885 (957)
Q Consensus 871 ~~~~~It~~d~~~al 885 (957)
....|+.+++....
T Consensus 209 -~~~~it~~~v~~~~ 222 (482)
T PRK04195 209 -GYGKLTLEDVKTLG 222 (482)
T ss_pred -CCCCCcHHHHHHhh
Confidence 23456666665444
No 135
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.3e-13 Score=162.75 Aligned_cols=206 Identities=19% Similarity=0.249 Sum_probs=149.5
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+.+|++++|++.+++.|..++.. -+.+..+||+||+|||||++|+++|+.+..
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 44567899999999999999888753 234556899999999999999999998753
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.+++..- .....++.+++.+.. +...|+||||+|.+ ....++
T Consensus 77 ~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-------------s~~a~n 137 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHML-------------SKQSFN 137 (546)
T ss_pred HHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhc-------------cHHHHH
Confidence 3333433211 122345666655442 34569999999976 345677
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+++|++|+++..+.+.+++ |+ ..++|..++.++....++..+.+.++.. +..+..+++.+.|
T Consensus 138 aLLK~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G 212 (546)
T PRK14957 138 ALLKTLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG 212 (546)
T ss_pred HHHHHHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999853 4577888888889889888888 87 6899999999998888888887766543 3446778888877
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 887 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~ 887 (957)
+.+++.+++..++... ...|+.+++++++..
T Consensus 213 -dlR~alnlLek~i~~~------~~~It~~~V~~~l~~ 243 (546)
T PRK14957 213 -SLRDALSLLDQAISFC------GGELKQAQIKQMLGI 243 (546)
T ss_pred -CHHHHHHHHHHHHHhc------cCCCCHHHHHHHHcc
Confidence 7788888887766432 245777777765543
No 136
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.57 E-value=2.5e-14 Score=157.48 Aligned_cols=174 Identities=24% Similarity=0.383 Sum_probs=129.5
Q ss_pred ccccccccCCcHHHHH---HHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 291 VEQDISKLGGLSKEYA---ILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~---~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
.+.+++++.|++..+. -|+.+|+.. .-..++|||||||||||||++||+.++.+|..+++..
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~~------------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEAG------------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhcC------------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 3457889999987663 445554322 2346999999999999999999999999999998633
Q ss_pred cccchhHHHHHHHHHHHhcc----CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec--CCC
Q 002169 368 QNYGESEQALHEVFDSASQS----APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT--NRP 441 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~----~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt--N~~ 441 (957)
..-+.++.+++.|+.. ...||||||||.+....+ ..||..|+ .+.+++|++| |+-
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~vE----~G~iilIGATTENPs 144 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHVE----NGTIILIGATTENPS 144 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhhc----CCeEEEEeccCCCCC
Confidence 3456788899988543 257999999999865433 34777774 4678888877 556
Q ss_pred CCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC--CCC-----CCChHHHHHHHHHcCCCcHH
Q 002169 442 DSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG--MEH-----SLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 442 ~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~--~~~-----~l~~~~l~~La~~t~g~~ga 501 (957)
-.+.+|+++ |. +.+++...+.++..++++..+.. .++ .+++..++.++..+.|-..+
T Consensus 145 F~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 145 FELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred eeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 689999999 43 34889999999999999884332 222 36788899999988874433
No 137
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=6.6e-14 Score=161.34 Aligned_cols=186 Identities=16% Similarity=0.206 Sum_probs=139.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|+++.|.+.+++.|+.++... ..+..+||+||+||||||+|+++|+.+++.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 4567899999999999988886432 224458999999999999999999988653
Q ss_pred ----------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 357 ----------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 357 ----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
++++++..- ..-..++++.+.+. .....|+||||+|.+. ....+.|+..
T Consensus 82 ~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-----------~~A~NALLKt 144 (484)
T PRK14956 82 LEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-----------DQSFNALLKT 144 (484)
T ss_pred HHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-----------HHHHHHHHHH
Confidence 233332110 11234455544433 3346799999999984 3456778888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+. ...++++|++|+.++.|.+++++ |+. .+.|..++.++..+.++..+...+..+++..+..++..++|- .+|
T Consensus 145 LEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd-~Rd 218 (484)
T PRK14956 145 LEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS-VRD 218 (484)
T ss_pred hhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh-HHH
Confidence 876 35688999999999999999999 774 488999999999999999988888888999999999998874 455
Q ss_pred HHHHHHHH
Q 002169 503 LAALCNEA 510 (957)
Q Consensus 503 i~~l~~~A 510 (957)
...++..+
T Consensus 219 AL~lLeq~ 226 (484)
T PRK14956 219 MLSFMEQA 226 (484)
T ss_pred HHHHHHHH
Confidence 55555543
No 138
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=4.6e-14 Score=161.46 Aligned_cols=184 Identities=22% Similarity=0.303 Sum_probs=131.1
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc----------------
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---------------- 707 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~---------------- 707 (957)
.|++|+|++++++.|++++.....+ +...+.+.+.++||+||+|+|||++|+++|+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 5899999999999999999764332 222344467789999999999999999999876442
Q ss_pred -------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHH
Q 002169 708 -------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 776 (957)
Q Consensus 708 -------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~l 776 (957)
+..+.... ..-....+|.+++.+.. +...|+||||+|.+. ....+.||..|
T Consensus 80 ~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-------------~~aanaLLk~L 141 (394)
T PRK07940 80 LAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-------------ERAANALLKAV 141 (394)
T ss_pred hcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-------------HHHHHHHHHHh
Confidence 11221111 01134557888887764 334699999999873 33457899999
Q ss_pred hccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHH
Q 002169 777 DGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADIS 856 (957)
Q Consensus 777 d~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~ 856 (957)
+.. ..++++|.+|+.++.+.|++++ |+ ..++|++|+.++..+++... .+.. ......++..+.|..++.+.
T Consensus 142 Eep--~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EEP--PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRARR 212 (394)
T ss_pred hcC--CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHHH
Confidence 853 4456677777779999999999 87 58999999999887777632 2332 33466788889987665444
Q ss_pred H
Q 002169 857 L 857 (957)
Q Consensus 857 ~ 857 (957)
-
T Consensus 213 l 213 (394)
T PRK07940 213 L 213 (394)
T ss_pred H
Confidence 3
No 139
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.4e-13 Score=163.42 Aligned_cols=205 Identities=20% Similarity=0.254 Sum_probs=145.9
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---------- 707 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~---------- 707 (957)
....+.+|++|+|++.+++.|..++.. -+.+..+||+||+|||||++|+++|+.+...
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~ 75 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQE------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT 75 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc
Confidence 345677899999999999999888753 1335679999999999999999999988642
Q ss_pred --------------EEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 708 --------------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 708 --------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
++.+++..- .....+|.+.+.+. .....||||||+|.+. ...+
T Consensus 76 C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-------------~~a~ 136 (624)
T PRK14959 76 CEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-------------REAF 136 (624)
T ss_pred cHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-------------HHHH
Confidence 444443211 11233444433332 2345799999999773 4456
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~ 848 (957)
+.|+..|+.. ...+++|++||.++.+.+.+++ |+ ..+.|+.++.++...+++..+.+.++. .+..+..+++.+.
T Consensus 137 naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~ 211 (624)
T PRK14959 137 NALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAA 211 (624)
T ss_pred HHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7888888853 3478899999999999989888 87 478999999999999998888776653 3445777888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
| +.+++.+++.+++ +. ....|+.+++..++
T Consensus 212 G-dlR~Al~lLeqll--~~----g~~~It~d~V~~~l 241 (624)
T PRK14959 212 G-SVRDSMSLLGQVL--AL----GESRLTIDGARGVL 241 (624)
T ss_pred C-CHHHHHHHHHHHH--Hh----cCCCcCHHHHHHHh
Confidence 7 5666666666542 11 23457777665444
No 140
>PLN03025 replication factor C subunit; Provisional
Probab=99.56 E-value=1.2e-13 Score=155.28 Aligned_cols=201 Identities=14% Similarity=0.151 Sum_probs=137.4
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-----CcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-----~~~i~v~~ 713 (957)
...+.+|++++|++++++.|+.++.. ....+++|+||||||||++|+++|+++. ..++.++.
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 34667899999999999988876642 1224699999999999999999999872 34666776
Q ss_pred CCcccccccchHHHHHHHHHHHH-------hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKAR-------ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~-------~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
++..+ ...++..+.... ...+.|++|||+|.+. ....+.|+..|+.. ...+.
T Consensus 73 sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-------------~~aq~aL~~~lE~~--~~~t~ 131 (319)
T PLN03025 73 SDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-------------SGAQQALRRTMEIY--SNTTR 131 (319)
T ss_pred ccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-------------HHHHHHHHHHHhcc--cCCce
Confidence 65422 123343333211 1346799999999874 23355677777643 23456
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHH
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAIS 865 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~ 865 (957)
+|++||....+.+++++ |+ ..+.|++|+.++....++..+++.++. .+..+..++..+.| |++.+++..-..
T Consensus 132 ~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~Lq~~ 204 (319)
T PLN03025 132 FALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNLQAT 204 (319)
T ss_pred EEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHH
Confidence 78889999999999998 77 489999999999999999888776654 34457778887776 555555433222
Q ss_pred HHHHhcCCCCCCHHHHHHH
Q 002169 866 AIEENLDASRITMQHLKTA 884 (957)
Q Consensus 866 a~~~~~~~~~It~~d~~~a 884 (957)
+. . ...|+.+++.+.
T Consensus 205 ~~--~--~~~i~~~~v~~~ 219 (319)
T PLN03025 205 HS--G--FGFVNQENVFKV 219 (319)
T ss_pred Hh--c--CCCCCHHHHHHH
Confidence 21 1 234666665543
No 141
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.56 E-value=1.1e-13 Score=159.11 Aligned_cols=223 Identities=22% Similarity=0.235 Sum_probs=146.4
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhc--CC-CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc-ccccc
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRI--GT-RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SKWVG 722 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l--~~-~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~-~~~vg 722 (957)
.|+||+++|+.+..++...++.-...... .. .+..++||+||||||||++|+++|..++.+|+.+++..+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 48999999999987774322221100000 11 2356799999999999999999999999999999998875 36888
Q ss_pred chHHH-HHHHHHHH----HhCCCeEEEEeCCchhhhhcCCCCCCC-cchHHHHHHHHHHHhccc-----------cCCcE
Q 002169 723 ESEKA-VRSLFAKA----RANAPSIIFFDEIDGLAAIRGKESDGV-SVSDRVMSQLLVELDGLH-----------QRVNV 785 (957)
Q Consensus 723 ~~~~~-ir~~f~~A----~~~~p~ILfiDEid~l~~~r~~~~~~~-~~~~~v~~~LL~~ld~~~-----------~~~~v 785 (957)
..... +..++..+ ....++||||||||.+...+....... -....+++.||..|++.. ...+.
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 75443 34444332 234578999999999976532221111 123468899999998631 11234
Q ss_pred EEEEecCCCC----------------------------------------------------CCChhhhCCCCcceeccc
Q 002169 786 TVIAATNRPD----------------------------------------------------KIDPALLRPGRFDRLLYV 813 (957)
Q Consensus 786 ~VI~aTN~~~----------------------------------------------------~id~aLlr~gRfd~~i~~ 813 (957)
++|.|+|-.. -+.|+++ ||++.++.|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeec
Confidence 5566655410 0234444 499999999
Q ss_pred CCCCHHHHHHHHHH----HHh-------cCCCC---CcccHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 814 GPPNETDREEIFRI----HLR-------KIPCS---SDVNIRELACL--SEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 814 ~~P~~~er~~Il~~----~l~-------~~~~~---~~~~l~~la~~--t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
.+.+.++..+|+.. .++ ..++. .+..++.+++. ..++-+|.|+.++++.....+.+..
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p 383 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELP 383 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcc
Confidence 99999999999873 222 22222 22235666664 3456688999999988887776643
No 142
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.8e-13 Score=164.52 Aligned_cols=204 Identities=21% Similarity=0.281 Sum_probs=149.6
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcE---------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF--------- 708 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~--------- 708 (957)
...++.+|++|+|++.+++.|+.++.. -+.++.+||+||+|||||++|+++|+.+.+.-
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~ 77 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQ 77 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchh
Confidence 345677899999999999999988853 23456689999999999999999999875421
Q ss_pred ------------EEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHH
Q 002169 709 ------------LAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 772 (957)
Q Consensus 709 ------------i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~L 772 (957)
+.+++. ...+...+|.+.+.+.. +...|++|||+|.+. ...++.|
T Consensus 78 ~C~~~~~~~~Dvieidaa------sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-------------~~A~NAL 138 (725)
T PRK07133 78 ECIENVNNSLDIIEMDAA------SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-------------KSAFNAL 138 (725)
T ss_pred HHHHhhcCCCcEEEEecc------ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-------------HHHHHHH
Confidence 111110 01234557888877764 345799999999773 3467789
Q ss_pred HHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCc
Q 002169 773 LVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCT 851 (957)
Q Consensus 773 L~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~s 851 (957)
|..|+.. ...+++|++|+.++.+.+++++ |+ ..+.|.+++.++....++..+.+.++..+ ..+..+|..+.| +
T Consensus 139 LKtLEEP--P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-s 212 (725)
T PRK07133 139 LKTLEEP--PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-S 212 (725)
T ss_pred HHHhhcC--CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999853 4578888999999999999998 88 48999999999999999888877665433 346778888887 6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 002169 852 GADISLICREAAISAIEENLDASRITMQHLKTA 884 (957)
Q Consensus 852 g~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~a 884 (957)
.+++..++..++... ...|+.+++.+.
T Consensus 213 lR~AlslLekl~~y~------~~~It~e~V~el 239 (725)
T PRK07133 213 LRDALSIAEQVSIFG------NNKITLKNVEEL 239 (725)
T ss_pred HHHHHHHHHHHHHhc------cCCCCHHHHHHH
Confidence 777777777654322 223666655544
No 143
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.1e-13 Score=164.61 Aligned_cols=205 Identities=20% Similarity=0.237 Sum_probs=150.1
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
...+.+|++|+|++++++.+..++.. -+.+..+||+||+||||||+|+++|+.++..
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 44567899999999999999888753 2345568999999999999999999988542
Q ss_pred -------------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 708 -------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 708 -------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
++.+++.. ......+|.+++.+.. +...|+||||+|.+. ....+
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-------------~~a~n 137 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-------------KSAFN 137 (527)
T ss_pred HHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-------------HHHHH
Confidence 22332211 1234567777777643 234699999999763 44577
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g 849 (957)
.||..|+.. ...+.+|++|++++.+.+.+++ |+ ..++|+.++.++..+.++..+.+.++..+ ..+..+++.+.|
T Consensus 138 aLLK~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G 212 (527)
T PRK14969 138 AMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG 212 (527)
T ss_pred HHHHHHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999863 4578888899989998888888 87 68999999999998888887776655433 346778888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
+.+++.+++..+... ....|+.+++.+.+.
T Consensus 213 -slr~al~lldqai~~------~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 213 -SMRDALSLLDQAIAY------GGGTVNESEVRAMLG 242 (527)
T ss_pred -CHHHHHHHHHHHHHh------cCCCcCHHHHHHHHC
Confidence 788888888776643 134466666655443
No 144
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=8.2e-14 Score=163.97 Aligned_cols=188 Identities=20% Similarity=0.284 Sum_probs=140.1
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-------------- 355 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~-------------- 355 (957)
....+|++|.|.+.+++.|++++... +.+..+||+||+||||||+|+++|+.+.+
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 34567899999999999999986433 22456899999999999999999998865
Q ss_pred ---------------cEEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHH
Q 002169 356 ---------------NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMV 416 (957)
Q Consensus 356 ---------------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~ 416 (957)
.++++++.+- ..-..++++++.+. .....|+||||+|.|. ....
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-----------~~Aa 141 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-----------NHAF 141 (700)
T ss_pred cccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------HHHH
Confidence 2233333210 11234555555443 3345799999999984 2345
Q ss_pred HHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcC
Q 002169 417 ATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATH 496 (957)
Q Consensus 417 ~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~ 496 (957)
+.||+.|++ ...+++||++||.++.|.+.+++ |+ ..+.|..++.++..+.++.++...+..+++..++.++..+.
T Consensus 142 NALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~ 216 (700)
T PRK12323 142 NAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQ 216 (700)
T ss_pred HHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 678888887 35678999999999999999999 76 45899999999999999988877777778888888888877
Q ss_pred CCcHHHHHHHHHHHH
Q 002169 497 GFVGADLAALCNEAA 511 (957)
Q Consensus 497 g~~gaDi~~l~~~A~ 511 (957)
|- .++..+++..+.
T Consensus 217 Gs-~RdALsLLdQai 230 (700)
T PRK12323 217 GS-MRDALSLTDQAI 230 (700)
T ss_pred CC-HHHHHHHHHHHH
Confidence 64 455556655443
No 145
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2e-13 Score=164.08 Aligned_cols=190 Identities=21% Similarity=0.231 Sum_probs=143.2
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
...+-+|++|+|++++++.|..++.. -+.+..+|||||+|||||++|+++|+.++..
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 44667899999999999999988753 2445668999999999999999999987532
Q ss_pred -------------EEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 708 -------------FLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 708 -------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
++.+++... .....+|.+.+.+... ...|++|||+|.+. ....+
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-------------~~a~n 137 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-------------TNAFN 137 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-------------HHHHH
Confidence 344443221 2345577777766532 23699999999773 44577
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.|+..|+.. ..++++|++|+.++.|.+.+++ |+ ..+.|..++..+....++..+++.++. .+..+..+++.+.|
T Consensus 138 aLLk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G 212 (576)
T PRK14965 138 ALLKTLEEP--PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG 212 (576)
T ss_pred HHHHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 899999853 4578899999999999999998 87 488999999999888888888776654 34457778888887
Q ss_pred CcHHHHHHHHHHHHHH
Q 002169 850 CTGADISLICREAAIS 865 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~ 865 (957)
+.+++.+++..+...
T Consensus 213 -~lr~al~~Ldqliay 227 (576)
T PRK14965 213 -SMRDSLSTLDQVLAF 227 (576)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 677777777655443
No 146
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=2.3e-13 Score=160.74 Aligned_cols=203 Identities=19% Similarity=0.240 Sum_probs=146.8
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+.+|++++|++.+++.+..++.. -+.++++||+||+|||||++|+++|+.+.+
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 44667899999999999999887742 244567999999999999999999998742
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.+++... ..-..+|.+++.+... ...|++|||+|.+. ....+
T Consensus 77 ~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-------------~~A~N 137 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-------------TSAWN 137 (605)
T ss_pred HHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-------------HHHHH
Confidence 3344433221 1234567777665542 23699999999773 33567
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+++|++|+.++.+.+++++ |+. .+.|++++..+....++..+.+.+.. .+..+..++..+.|
T Consensus 138 aLLKtLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G 212 (605)
T PRK05896 138 ALLKTLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG 212 (605)
T ss_pred HHHHHHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899998853 4478888899999999999998 874 89999999999998998888766543 33456778888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTA 884 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~a 884 (957)
+.+++.++++.++... ...|+.+++.+.
T Consensus 213 -dlR~AlnlLekL~~y~------~~~It~e~V~el 240 (605)
T PRK05896 213 -SLRDGLSILDQLSTFK------NSEIDIEDINKT 240 (605)
T ss_pred -cHHHHHHHHHHHHhhc------CCCCCHHHHHHH
Confidence 6777777777644322 122666555543
No 147
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.1e-13 Score=168.20 Aligned_cols=189 Identities=18% Similarity=0.158 Sum_probs=140.8
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------- 706 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------- 706 (957)
..+...+|++|+|++.+++.|+.++.. -+.++.+||+||+|||||++|++||+.+++
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 345677899999999999999888752 234556899999999999999999998854
Q ss_pred ---------------cEEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHH
Q 002169 707 ---------------NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDR 767 (957)
Q Consensus 707 ---------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~ 767 (957)
.++.+++... .....+|.+.+.+. .....|+||||+|.| +..
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-------------t~~ 135 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMV-------------TPQ 135 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhc-------------CHH
Confidence 2333333221 12344555544432 345579999999987 345
Q ss_pred HHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHH
Q 002169 768 VMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACL 846 (957)
Q Consensus 768 v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~ 846 (957)
..+.||+.|+.. ...+++|++|+.++.|-+.|++ |+ .++.|..++.++..++++..+.+.++..+ ..+..+++.
T Consensus 136 a~NaLLK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~ 210 (824)
T PRK07764 136 GFNALLKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRA 210 (824)
T ss_pred HHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 677899999964 4478888899999999999998 77 58899999999999999988877666533 345667777
Q ss_pred ccCCcHHHHHHHHHHHH
Q 002169 847 SEGCTGADISLICREAA 863 (957)
Q Consensus 847 t~g~sg~dl~~l~~eA~ 863 (957)
..| +.+++.+++++.+
T Consensus 211 sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 211 GGG-SVRDSLSVLDQLL 226 (824)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 777 7778888777655
No 148
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.8e-13 Score=162.78 Aligned_cols=188 Identities=19% Similarity=0.265 Sum_probs=141.4
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN------------- 356 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~------------- 356 (957)
....+|++|.|.+.+++.|++.+... +.+..+||+||+||||||+++++|+.+++.
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~~g-----------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALDGG-----------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHhcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 34568899999999999999886422 224567999999999999999999988642
Q ss_pred -----------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 357 -----------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 357 -----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
+++++..+- ..-..++.+++.+. .....|+||||+|.|.. ...+.|++
T Consensus 79 Cr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NALLK 141 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAMLK 141 (830)
T ss_pred HHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHHHH
Confidence 333333211 11234566666543 23457999999999842 34567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|++. ..++.||++||.++.|.+.+++ |+ ..+.|..++.++..++|+.++...++.+++..+..+++...|-. +
T Consensus 142 tLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm-R 215 (830)
T PRK07003 142 TLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM-R 215 (830)
T ss_pred HHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-H
Confidence 88773 4578999999999999999999 77 45899999999999999999988888889999999999988754 5
Q ss_pred HHHHHHHHHH
Q 002169 502 DLAALCNEAA 511 (957)
Q Consensus 502 Di~~l~~~A~ 511 (957)
+..+++..+.
T Consensus 216 dALsLLdQAi 225 (830)
T PRK07003 216 DALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 149
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=3e-13 Score=161.09 Aligned_cols=189 Identities=19% Similarity=0.183 Sum_probs=140.8
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+-+|++|+|++++++.|+.++.. -+.+..+||+||+||||||+|+++|+.++.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 34567899999999999999988753 234555899999999999999999988753
Q ss_pred --------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHH
Q 002169 707 --------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRV 768 (957)
Q Consensus 707 --------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v 768 (957)
.++.+++... .....+|.+.+.+.. ....|++|||+|.+. ...
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-------------~~A 134 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-------------TAG 134 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-------------HHH
Confidence 2333333221 123455666555432 334699999999773 346
Q ss_pred HHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHc
Q 002169 769 MSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLS 847 (957)
Q Consensus 769 ~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t 847 (957)
++.||..|+.. ...+++|++|+.++.+.+++++ |+ ..+.|..++.++..+.++..+.+.+... +..+..+++.+
T Consensus 135 ~NALLK~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s 209 (584)
T PRK14952 135 FNALLKIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG 209 (584)
T ss_pred HHHHHHHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 78899999853 4588999999999999999998 76 5899999999999999998888776543 33456677777
Q ss_pred cCCcHHHHHHHHHHHHH
Q 002169 848 EGCTGADISLICREAAI 864 (957)
Q Consensus 848 ~g~sg~dl~~l~~eA~~ 864 (957)
.| +.+++.++++.++.
T Consensus 210 ~G-dlR~aln~Ldql~~ 225 (584)
T PRK14952 210 GG-SPRDTLSVLDQLLA 225 (584)
T ss_pred CC-CHHHHHHHHHHHHh
Confidence 76 77888888877654
No 150
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.53 E-value=1.5e-12 Score=160.69 Aligned_cols=203 Identities=20% Similarity=0.224 Sum_probs=144.8
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc---------
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS--------- 367 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~--------- 367 (957)
++.|++++|++|.+++...... +-..+..++|+||||||||++++.+|+.++.+++.++......
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 4889999999999887644221 1134668999999999999999999999999998887554321
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc-------------ccCCCeEE
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-------------CRTDGVLV 434 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l-------------~~~~~v~v 434 (957)
.|.|.....+...+..+....| |++|||+|.+.+..+.. ....|+..+|.- ..-+++++
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 2455555555555655544444 89999999997653221 234677777641 12368999
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC----------CCCCCChHHHHHHHHH-cCCCcHHHH
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG----------MEHSLLDSEVEYLSMA-THGFVGADL 503 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~----------~~~~l~~~~l~~La~~-t~g~~gaDi 503 (957)
|+|+|.. .|+++|++ ||. .|.+..++.++..+|.+.++.. ..+.+++..++.++.. +..+-.+.+
T Consensus 469 i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~L 544 (784)
T PRK10787 469 VATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSL 544 (784)
T ss_pred EEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHH
Confidence 9999987 59999998 995 5899999999999999887741 2345677788888754 344445677
Q ss_pred HHHHHHHHHHHHHH
Q 002169 504 AALCNEAALVCLRR 517 (957)
Q Consensus 504 ~~l~~~A~~~a~rr 517 (957)
+..++..+...+.+
T Consensus 545 eR~I~~i~r~~l~~ 558 (784)
T PRK10787 545 EREISKLCRKAVKQ 558 (784)
T ss_pred HHHHHHHHHHHHHH
Confidence 76666655554444
No 151
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.52 E-value=3.5e-13 Score=153.55 Aligned_cols=205 Identities=21% Similarity=0.263 Sum_probs=148.6
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
+.++..|++++|++++++.+.+.+.. -+.+..+|||||||+|||++|+++|+.+..
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 34677899999999999999887752 234567899999999999999999988642
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
+++.+++.+ ......++.+++.+... ...|++|||+|.+. ...++
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-------------~~~~~ 135 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-------------KSAFN 135 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-------------HHHHH
Confidence 234444321 12334567777776542 23699999999763 34567
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g 849 (957)
.|+..++.. ..++++|++|++++.+.+++.+ |+ ..+.+++|+.++...+++..+++.+..- +..+..++..+.|
T Consensus 136 ~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 136 ALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 788888753 3467888888988888899988 87 4789999999999999999888776543 3446667777776
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
+.+.+.+.++.+...+ ...||.+++++++.
T Consensus 211 -~~~~a~~~lekl~~~~------~~~it~~~v~~~~~ 240 (355)
T TIGR02397 211 -SLRDALSLLDQLISFG------NGNITYEDVNELLG 240 (355)
T ss_pred -ChHHHHHHHHHHHhhc------CCCCCHHHHHHHhC
Confidence 6677777766655432 23477777766554
No 152
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.52 E-value=1.6e-14 Score=164.83 Aligned_cols=262 Identities=22% Similarity=0.335 Sum_probs=182.8
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPEL 716 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l 716 (957)
....+|++|+|......++.+.+.. ....+..||+.|++||||.++|++|.+.+ +.|||.+||..+
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 4567899999999998888776643 35567789999999999999999998876 579999999654
Q ss_pred ---------ccccccchHHH----HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---
Q 002169 717 ---------FSKWVGESEKA----VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--- 780 (957)
Q Consensus 717 ---------~~~~vg~~~~~----ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--- 780 (957)
++..-|.+..+ -..+|+.|..+ .||||||..| ...++..||+.|+...
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-------------pl~LQaKLLRVLQEkei~r 371 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-------------PLPLQAKLLRVLQEKEIER 371 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-------------CHHHHHHHHHHHhhceEEe
Confidence 44333433333 35789999888 9999999855 5667778888887532
Q ss_pred ------cCCcEEEEEecCCCCCCChhhhCCCCcceecc-------cCCCCHHHHH--------HHHHHHHhcCCCCCc-c
Q 002169 781 ------QRVNVTVIAATNRPDKIDPALLRPGRFDRLLY-------VGPPNETDRE--------EIFRIHLRKIPCSSD-V 838 (957)
Q Consensus 781 ------~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~-------~~~P~~~er~--------~Il~~~l~~~~~~~~-~ 838 (957)
...+|.||+|||+.-. .++..|||.+-+| +..|...+|. .+++.+.++++.... +
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~---~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~l 448 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLE---KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGL 448 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHH---HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccC
Confidence 2348999999997643 4556688876444 4567666664 333444444443321 2
Q ss_pred c---HHHHHHHc-cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHhh--CC-----CchHHHHHHHHHHHHH
Q 002169 839 N---IRELACLS-EGCTGADISLICREAAISAIEENLDASRITMQHLK-TAIRHV--QP-----SEIHSYKELSAKFQRL 906 (957)
Q Consensus 839 ~---l~~la~~t-~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~-~al~~~--~p-----~~~~~y~~~~~~~~~~ 906 (957)
. +..|.+.. .| +.|++++++.++...+-. ...|+..|+- .++..- .+ ......++..+.+++.
T Consensus 449 s~~a~~~L~~y~WPG-NVRELeNviER~v~~~~~----~~~I~~~~lp~~~l~~k~~~~~~~~~~~~~~l~~~~e~~Ek~ 523 (560)
T COG3829 449 SPDALALLLRYDWPG-NVRELENVIERAVNLVES----DGLIDADDLPAFALEEKEPRPETTKQIEVGSLKEALEEYEKH 523 (560)
T ss_pred CHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccCC----cceeehhhcchhhhcccccCcCcccCcccccHHHHHHHHHHH
Confidence 2 33333332 34 689999999998864322 3347777776 555443 11 2344677788888888
Q ss_pred hcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 907 VHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 907 v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
++........++..+.++..| .+||.++|.
T Consensus 524 ~I~~aL~~~~gn~~~aAk~LgIsrttL~rKlkk 556 (560)
T COG3829 524 LIREALERHGGNKSKAAKELGISRTTLYRKLKK 556 (560)
T ss_pred HHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 888888877777777777776 789999876
No 153
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.6e-13 Score=160.12 Aligned_cols=188 Identities=19% Similarity=0.248 Sum_probs=142.2
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-------------- 355 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~-------------- 355 (957)
-+..+|+++.|.+.+++.|+.++... +.+..+||+||+||||||+|+++|+.+++
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 34567899999999999999886422 23567899999999999999999998865
Q ss_pred ----------cEEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 356 ----------NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 356 ----------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
.++.+++.+- ..-..+|.+.+.+. .....|+||||+|.|.. ...+.|+.
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NALLK 140 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNALLK 140 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHHHH
Confidence 2344444321 12234566665442 23457999999998842 34567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. ..++.+|++|+.+..+.+.+++ |+. .++|..++.++..+.++..+.+.+..+++..+..++..+.| ..+
T Consensus 141 tLEEP--P~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLR 214 (702)
T PRK14960 141 TLEEP--PEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLR 214 (702)
T ss_pred HHhcC--CCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88873 4567888888888889888887 763 48999999999999999999888888899999999998876 566
Q ss_pred HHHHHHHHHH
Q 002169 502 DLAALCNEAA 511 (957)
Q Consensus 502 Di~~l~~~A~ 511 (957)
++.+++..+.
T Consensus 215 dALnLLDQaI 224 (702)
T PRK14960 215 DALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 154
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=3.4e-13 Score=160.86 Aligned_cols=205 Identities=18% Similarity=0.228 Sum_probs=149.7
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------- 706 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------- 706 (957)
....+.+|++|+|++.+++.|+.++.. -+.++.+|||||+|+|||++|+++|+.+..
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 445677899999999999999888852 234566999999999999999999998754
Q ss_pred -------------cEEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 707 -------------NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 707 -------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
+++.+++.. ......++.+.+.+. .....|++|||+|.+ ....+
T Consensus 76 C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-------------s~~a~ 136 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-------------SNSAF 136 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-------------CHHHH
Confidence 233333221 012345666655443 244579999999977 34467
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~ 848 (957)
+.|+..|+. ....+++|++|+.++.+.+++++ |+. .+.|.+++.++..++++..+.+.++. .+..+..+++.+.
T Consensus 137 naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~ 211 (563)
T PRK06647 137 NALLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKST 211 (563)
T ss_pred HHHHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 788888885 34578888999889999999998 874 78899999999999998888766654 3345677888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
| +.+++.+++..++..+ ...|+.+++...+
T Consensus 212 G-dlR~alslLdklis~~------~~~It~e~V~~ll 241 (563)
T PRK06647 212 G-SVRDAYTLFDQVVSFS------DSDITLEQIRSKM 241 (563)
T ss_pred C-CHHHHHHHHHHHHhhc------CCCCCHHHHHHHh
Confidence 7 7888888887665432 2346666666544
No 155
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=5.4e-13 Score=156.80 Aligned_cols=205 Identities=20% Similarity=0.265 Sum_probs=147.5
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
..++.+|++++|++.+++.++.++.. -+.+..+|||||+|+|||++|+++|+.++.
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 45667899999999999999888853 234556899999999999999999998753
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.++++. ......+|.+.+.+.. +...|++|||+|.+. ....+
T Consensus 77 ~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-------------~~a~n 137 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-------------KEAFN 137 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-------------HHHHH
Confidence 122222211 1123445666665543 345799999999763 34567
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g 849 (957)
.|+..|+.. ...+++|++|+.++.+.+++.+ |+. .+.|++++.++...+++..++..++.. +..+..++..+.|
T Consensus 138 aLLk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G 212 (486)
T PRK14953 138 ALLKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG 212 (486)
T ss_pred HHHHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 788888854 4467777888888889999988 774 789999999999999999988777653 3346777888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
+.+++.++++.++..+ ...||.+++.+.+.
T Consensus 213 -~lr~al~~Ldkl~~~~------~~~It~~~V~~~lg 242 (486)
T PRK14953 213 -GMRDAASLLDQASTYG------EGKVTIKVVEEFLG 242 (486)
T ss_pred -CHHHHHHHHHHHHHhc------CCCcCHHHHHHHhC
Confidence 6777777777765432 33577777666543
No 156
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=5.2e-13 Score=156.95 Aligned_cols=206 Identities=21% Similarity=0.227 Sum_probs=150.6
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------- 706 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------- 706 (957)
....+.+|++++|++.+++.|...+.. -+.+..+|||||+|+|||++|+++|+.+..
T Consensus 6 ~KyRP~~fdeiiGqe~v~~~L~~~I~~------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~ 73 (535)
T PRK08451 6 LKYRPKHFDELIGQESVSKTLSLALDN------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDT 73 (535)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 345677899999999999999888752 234566899999999999999999988732
Q ss_pred -------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 707 -------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 707 -------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
.++.+++..- ..-..+|.+...+.. ....|++|||+|.+ ....+
T Consensus 74 C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-------------t~~A~ 134 (535)
T PRK08451 74 CIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-------------TKEAF 134 (535)
T ss_pred cHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-------------CHHHH
Confidence 2333332211 123566777665432 22369999999976 35567
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~ 848 (957)
+.||..|+.. ...+.+|++|+++..+.+++++ |+ ..++|.+++.++..+.++..+.+.+.. .+..+..+++.+.
T Consensus 135 NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~ 209 (535)
T PRK08451 135 NALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGN 209 (535)
T ss_pred HHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7899999864 4467888888889999999999 86 588999999999888888888776654 3345778888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
| +.|++.+++..++..+ ...||.+++.+.+.
T Consensus 210 G-dlR~alnlLdqai~~~------~~~It~~~V~~~lg 240 (535)
T PRK08451 210 G-SLRDTLTLLDQAIIYC------KNAITESKVADMLG 240 (535)
T ss_pred C-cHHHHHHHHHHHHHhc------CCCCCHHHHHHHhC
Confidence 7 7888888888776554 23466666655543
No 157
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.51 E-value=2.4e-13 Score=157.85 Aligned_cols=199 Identities=22% Similarity=0.239 Sum_probs=154.6
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcE-------E
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF-------L 709 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~-------i 709 (957)
..+.++-+|+|++||+.+...|..++.. -+...++||.||.||||||+||.+|+.+++.- .
T Consensus 7 ~rKyRP~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 7 ARKYRPKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHhCcccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 4456677899999999999999999863 34567799999999999999999999876531 1
Q ss_pred E------EeCC---Cccc--ccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHH
Q 002169 710 A------VKGP---ELFS--KWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLV 774 (957)
Q Consensus 710 ~------v~~~---~l~~--~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~ 774 (957)
. ++.. +++. .-...+-..+|.+.+++.- ....|++|||+|.| +...+|+||.
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-------------S~~afNALLK 141 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-------------SKQAFNALLK 141 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-------------hHHHHHHHhc
Confidence 1 1111 1100 0111245567888888753 34579999999977 4667889999
Q ss_pred HHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHH
Q 002169 775 ELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGA 853 (957)
Q Consensus 775 ~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~ 853 (957)
.|+. +..+|.+|+||..++.+.+.+++ |+ +.+.|...+.++....++..+.+.++..+ ..+..+|+..+| +.|
T Consensus 142 TLEE--PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~R 215 (515)
T COG2812 142 TLEE--PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLR 215 (515)
T ss_pred cccc--CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chh
Confidence 9984 56689999999999999999999 87 57889999999999999999988777654 447788999998 899
Q ss_pred HHHHHHHHHHHHH
Q 002169 854 DISLICREAAISA 866 (957)
Q Consensus 854 dl~~l~~eA~~~a 866 (957)
|...++..|....
T Consensus 216 DalslLDq~i~~~ 228 (515)
T COG2812 216 DALSLLDQAIAFG 228 (515)
T ss_pred hHHHHHHHHHHcc
Confidence 9999999887653
No 158
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.51 E-value=6.5e-13 Score=150.13 Aligned_cols=212 Identities=23% Similarity=0.308 Sum_probs=142.2
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-----CcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-----~~~i~v~~ 713 (957)
...+.+|++++|++++++.+..++.. ....+++|+||||||||++|+++++++. .+++.+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 34566799999999999999887752 1223699999999999999999999873 35677887
Q ss_pred CCccccc-------------ccc-------hHHHHHHHHHHHHh-----CCCeEEEEeCCchhhhhcCCCCCCCcchHHH
Q 002169 714 PELFSKW-------------VGE-------SEKAVRSLFAKARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRV 768 (957)
Q Consensus 714 ~~l~~~~-------------vg~-------~~~~ir~~f~~A~~-----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v 768 (957)
.++...+ .+. ....++.+...... ..+.+|+|||+|.+. ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-------------~~~ 141 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-------------EDA 141 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-------------HHH
Confidence 6653221 111 11233444333322 234699999999763 223
Q ss_pred HHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHc
Q 002169 769 MSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLS 847 (957)
Q Consensus 769 ~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t 847 (957)
.+.|...++... ....+|++|+.+..+.+.+.+ |+ ..+.+++|+.++..++++..+.+.++. .+..+..++..+
T Consensus 142 ~~~L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 142 QQALRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYA 216 (337)
T ss_pred HHHHHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 445666666443 245566777777778888887 76 478999999999999999988876654 344567777777
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 848 EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 848 ~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
.| +++.+++.....+. ....||.+++.+++....
T Consensus 217 ~g----dlr~l~~~l~~~~~----~~~~It~~~v~~~~~~~~ 250 (337)
T PRK12402 217 GG----DLRKAILTLQTAAL----AAGEITMEAAYEALGDVG 250 (337)
T ss_pred CC----CHHHHHHHHHHHHH----cCCCCCHHHHHHHhCCCC
Confidence 65 45555544433331 234689999888776543
No 159
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.51 E-value=2.2e-12 Score=156.07 Aligned_cols=217 Identities=25% Similarity=0.319 Sum_probs=141.5
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcE
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNF 708 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~ 708 (957)
.+.+.+|++++|++...+.+.+.+.. ..+.+++|+|||||||||+|+++++.. +.+|
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 34677899999999998887665532 234579999999999999999998765 3578
Q ss_pred EEEeCCCccc-------ccccchHH----HHHH-------------HHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcc
Q 002169 709 LAVKGPELFS-------KWVGESEK----AVRS-------------LFAKARANAPSIIFFDEIDGLAAIRGKESDGVSV 764 (957)
Q Consensus 709 i~v~~~~l~~-------~~vg~~~~----~ir~-------------~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~ 764 (957)
+.+++..+-. .+.|.... ..+. .+..+ ...+|||||++.|
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~a---sgGvL~LDEi~~L------------- 277 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDA---HGGVLFIDEIGEL------------- 277 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhc---CCCeEEEeccccC-------------
Confidence 9999876521 11121110 0111 11122 2349999999866
Q ss_pred hHHHHHHHHHHHhccc--------------------------cCCcEEEEEec-CCCCCCChhhhCCCCcceecccCCCC
Q 002169 765 SDRVMSQLLVELDGLH--------------------------QRVNVTVIAAT-NRPDKIDPALLRPGRFDRLLYVGPPN 817 (957)
Q Consensus 765 ~~~v~~~LL~~ld~~~--------------------------~~~~v~VI~aT-N~~~~id~aLlr~gRfd~~i~~~~P~ 817 (957)
....+..|+..|+... ...++++|++| +.++.++++|++ ||. .+++++++
T Consensus 278 d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls 354 (615)
T TIGR02903 278 DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLT 354 (615)
T ss_pred CHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCC
Confidence 3344555666664321 12245666554 568889999988 986 66888999
Q ss_pred HHHHHHHHHHHHhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc------CCCCCCHHHHHHHHHhhC
Q 002169 818 ETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEENL------DASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 818 ~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~------~~~~It~~d~~~al~~~~ 889 (957)
.+++.+|++..+.+.+..- +..+..+++.+. .++...+.+..+...+..+.. ....|+.+|+++++..-+
T Consensus 355 ~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 355 PEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 9999999999988765432 223444444443 567776777666555433321 223689999999887644
No 160
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=6.2e-13 Score=155.64 Aligned_cols=174 Identities=17% Similarity=0.290 Sum_probs=130.8
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
++.+|+++.|.+..++.|+..+... ..+..+||+|||||||||+|+++|+.++.
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 4567899999999988888875432 23456899999999999999999998764
Q ss_pred ---------cEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 356 ---------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 356 ---------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
.++.+++..- ..-..++.+.+.+.. ....|+||||+|.+. ......|+..
T Consensus 78 ~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~~~LLk~ 140 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAFNALLKT 140 (472)
T ss_pred HHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHHHHHHHH
Confidence 3445544321 112345555554432 235699999999884 2334567777
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
++.. .+.+++|++|+.+..+++++++ |+. .++|..++.++...+++..+...+..+++..++.++..+.|
T Consensus 141 LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 141 LEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred HHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 7763 4567888888888899999998 774 58999999999999999998888888899999999998765
No 161
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.50 E-value=1.2e-12 Score=149.80 Aligned_cols=223 Identities=21% Similarity=0.231 Sum_probs=148.1
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC---------CcEEEEeC
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---------LNFLAVKG 713 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~---------~~~i~v~~ 713 (957)
..-++++|.++..+.|...+..... -..+.+++++||||||||++++++++++. ..++.+++
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~---------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR---------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3345789999999998887753211 13456799999999999999999987652 46788887
Q ss_pred CCcccc----------cc--c-------c-hHHHHHHHHHHHH-hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHH
Q 002169 714 PELFSK----------WV--G-------E-SEKAVRSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 772 (957)
Q Consensus 714 ~~l~~~----------~v--g-------~-~~~~ir~~f~~A~-~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~L 772 (957)
....+. .. | . ..+..+.++.... ...+.||+|||+|.+... ...++.++
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~----------~~~~L~~l 152 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD----------DDDLLYQL 152 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC----------CcHHHHhH
Confidence 654321 10 1 0 1222344444443 345779999999998621 11233444
Q ss_pred HHHHhc-cccCCcEEEEEecCCCC---CCChhhhCCCCcc-eecccCCCCHHHHHHHHHHHHhcC---CCCCcccHHHH-
Q 002169 773 LVELDG-LHQRVNVTVIAATNRPD---KIDPALLRPGRFD-RLLYVGPPNETDREEIFRIHLRKI---PCSSDVNIREL- 843 (957)
Q Consensus 773 L~~ld~-~~~~~~v~VI~aTN~~~---~id~aLlr~gRfd-~~i~~~~P~~~er~~Il~~~l~~~---~~~~~~~l~~l- 843 (957)
+...+. .....++.+|++||+++ .+++.+.+ ||. ..++|++++.++..+|++..+... ....+..++.+
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 230 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCA 230 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHH
Confidence 433111 11235789999999886 47888877 774 679999999999999999888631 11122223333
Q ss_pred --HHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 844 --ACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 844 --a~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
+..+.| ..+.+.++|+.|+..|..+. ...|+.+|+..|+..+.
T Consensus 231 ~~~~~~~G-d~R~al~~l~~a~~~a~~~~--~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 231 ALAAQEHG-DARKAIDLLRVAGEIAEREG--AERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHH
Confidence 344456 56777788999988887664 56799999999887764
No 162
>PRK04195 replication factor C large subunit; Provisional
Probab=99.50 E-value=5.4e-13 Score=157.96 Aligned_cols=186 Identities=25% Similarity=0.345 Sum_probs=139.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
+.+++++.|.+.+++.|++++..... | .+++++||+||||||||++|+++|++++.+++.+++++....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~-------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~--- 78 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK-------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA--- 78 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc-------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH---
Confidence 45678999999999999999754421 1 347899999999999999999999999999999998775322
Q ss_pred hhHHHHHHHHHHHhc------cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCch
Q 002169 372 ESEQALHEVFDSASQ------SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 372 e~e~~i~~vf~~a~~------~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld 445 (957)
..++.+...+.. ..+.||+|||+|.+.... +......|+..++. .+..+|+++|.+..+.
T Consensus 79 ---~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d~~~~~aL~~~l~~----~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 79 ---DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------DRGGARAILELIKK----AKQPIILTANDPYDPS 144 (482)
T ss_pred ---HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------chhHHHHHHHHHHc----CCCCEEEeccCccccc
Confidence 123333333221 246799999999986532 12234556666653 3446777888888887
Q ss_pred h-hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 446 P-ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 446 ~-al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
+ .+++ |+ ..|.|+.|+..++..+++..+...+..+++..++.++..+.| |++.+++.
T Consensus 145 ~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~ 202 (482)
T PRK04195 145 LRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAIND 202 (482)
T ss_pred hhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 7 6665 43 459999999999999999999888888899999999998765 55555544
No 163
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.50 E-value=3.8e-13 Score=151.60 Aligned_cols=241 Identities=24% Similarity=0.312 Sum_probs=162.9
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhc-CCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-cccc-
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRI-GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVG- 722 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l-~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~-~~vg- 722 (957)
+.|+||+++|+.+..++...++.......+ .-.+|+++||+||||||||++|++||..++.+|+.+++..+.. .|+|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 458999999999988876432222211111 1234688999999999999999999999999999999988864 6888
Q ss_pred chHHHHHHHHHHHH------------------------------------------------------------------
Q 002169 723 ESEKAVRSLFAKAR------------------------------------------------------------------ 736 (957)
Q Consensus 723 ~~~~~ir~~f~~A~------------------------------------------------------------------ 736 (957)
..+..++.+|+.|.
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 46666666665550
Q ss_pred -------------------------------------------------------------------------hCCCeEE
Q 002169 737 -------------------------------------------------------------------------ANAPSII 743 (957)
Q Consensus 737 -------------------------------------------------------------------------~~~p~IL 743 (957)
...-.|+
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 0123499
Q ss_pred EEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------cCCcEEEEEec----CCCCCCChhhhCCCCcceec
Q 002169 744 FFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTVIAAT----NRPDKIDPALLRPGRFDRLL 811 (957)
Q Consensus 744 fiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~VI~aT----N~~~~id~aLlr~gRfd~~i 811 (957)
||||||.++...... +..-...-++..||..|+|-. ...++++|++. ..|+.+-|.|. |||..++
T Consensus 252 fiDEiDKIa~~~~~~-~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 252 FIDEIDKIAKKGESS-GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEEchhhhcccCCCC-CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 999999998654221 222233558889999998742 34578888765 34666777776 5999999
Q ss_pred ccCCCCHHHHHHHHH--------HHH---hcCCCC---CcccHHHHHHHc-------cCCcHHHHHHHHHHHHHHHHHHh
Q 002169 812 YVGPPNETDREEIFR--------IHL---RKIPCS---SDVNIRELACLS-------EGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 812 ~~~~P~~~er~~Il~--------~~l---~~~~~~---~~~~l~~la~~t-------~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
.+..++.++..+||. .+. +-.++. .+..+.++|+.+ ++--.|-|+.++......+.-+.
T Consensus 329 ~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~ 408 (441)
T TIGR00390 329 ELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEA 408 (441)
T ss_pred ECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcC
Confidence 999999999988882 222 222222 233456666554 34446788888887776665543
Q ss_pred cC----CCCCCHHHHHHHHHhhC
Q 002169 871 LD----ASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 871 ~~----~~~It~~d~~~al~~~~ 889 (957)
-+ ...|+.+.+.+.+..+.
T Consensus 409 p~~~~~~v~I~~~~V~~~l~~~~ 431 (441)
T TIGR00390 409 PDLSGQNITIDADYVSKKLGALV 431 (441)
T ss_pred CCCCCCEEEECHHHHHhHHHHHH
Confidence 22 23467766666665543
No 164
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.50 E-value=5e-13 Score=152.89 Aligned_cols=224 Identities=21% Similarity=0.257 Sum_probs=147.4
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcC----C-CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc-cc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIG----T-RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SK 719 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~----~-~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~-~~ 719 (957)
+.|+||+++++.+..++...++.-....... . ....++||+||||||||++|+++|..++.+|+.+++..+. ..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 4589999999999877632111110000000 1 1135799999999999999999999999999999988765 35
Q ss_pred cccch-HHHHHHHHHHH----HhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhcccc-----------C
Q 002169 720 WVGES-EKAVRSLFAKA----RANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQ-----------R 782 (957)
Q Consensus 720 ~vg~~-~~~ir~~f~~A----~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~-----------~ 782 (957)
|+|.. +..+..++..+ ....++||||||||.+...+...... .-....+++.||+.|++... .
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 88875 34444444432 23456799999999998654222111 11224688899999976421 1
Q ss_pred CcEEEEEecCCC---------------------------C-----------------------CCChhhhCCCCcceecc
Q 002169 783 VNVTVIAATNRP---------------------------D-----------------------KIDPALLRPGRFDRLLY 812 (957)
Q Consensus 783 ~~v~VI~aTN~~---------------------------~-----------------------~id~aLlr~gRfd~~i~ 812 (957)
.+.++|.|+|-. + .+.|+++ ||++.+++
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~ 314 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIAT 314 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEee
Confidence 346777777751 0 0234555 49999999
Q ss_pred cCCCCHHHHHHHHHHH----Hhc----C---CCC---CcccHHHHHHH--ccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 813 VGPPNETDREEIFRIH----LRK----I---PCS---SDVNIRELACL--SEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 813 ~~~P~~~er~~Il~~~----l~~----~---~~~---~~~~l~~la~~--t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
|.+.+.++..+|+... .++ + ++. .+..++.+++. ...+.+|-++.++++.....+.+..
T Consensus 315 f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p 389 (413)
T TIGR00382 315 LEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLP 389 (413)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCC
Confidence 9999999999988753 221 1 222 22235666665 3456689999999988888777654
No 165
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=6.3e-13 Score=153.55 Aligned_cols=210 Identities=16% Similarity=0.164 Sum_probs=146.0
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc----------
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN---------- 707 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~---------- 707 (957)
....+.+|++|+|++.+++.|+.++.. -+.+..+||+||||||||++|+++|+.+...
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRM------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHh------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 345677899999999999999887752 2456679999999999999999999988552
Q ss_pred ----------------------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCC
Q 002169 708 ----------------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDG 761 (957)
Q Consensus 708 ----------------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~ 761 (957)
++.+++.+. .....++.+.+.+.. ....|+||||+|.+.
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------- 140 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------- 140 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC---------
Confidence 222222111 123556666655532 234699999999773
Q ss_pred CcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccH
Q 002169 762 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNI 840 (957)
Q Consensus 762 ~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l 840 (957)
...++.|+..|+.. ....++|++|+.+..+-+++.+ |+ .++.|.+++.++....++..+++.+.. .+..+
T Consensus 141 ----~~~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al 211 (397)
T PRK14955 141 ----IAAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADAL 211 (397)
T ss_pred ----HHHHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 23456788888743 3466777777878888888888 76 488999999999888888888766543 34457
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 841 RELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 841 ~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
..++..+.| +.+.+.+.++.+...+-. .-+...|+.+++.+.+
T Consensus 212 ~~l~~~s~g-~lr~a~~~L~kl~~~~~~-~~~~~~It~~~v~~~v 254 (397)
T PRK14955 212 QLIGRKAQG-SMRDAQSILDQVIAFSVE-SEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHhccc-cCCCCccCHHHHHHHH
Confidence 778888887 667777777665544311 0123467777666554
No 166
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=8.8e-13 Score=154.07 Aligned_cols=204 Identities=18% Similarity=0.213 Sum_probs=143.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+.+|+||+|++.+++.+...+.. -+.+..+|||||+|+|||++|+++|+.+..
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 34567899999999999999888753 234567999999999999999999988643
Q ss_pred -------------cEEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 707 -------------NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 707 -------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
.++.+++.... .-..++.+.+.+. .....|++|||+|.+. ....
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~~------gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-------------~~~~ 138 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASHR------GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-------------KEAF 138 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccccC------CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-------------HHHH
Confidence 23444432211 1234444443332 2456799999999773 3356
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~ 848 (957)
+.|+..|+.. ...+++|++|+.+..+.+++.+ |+ ..++|+.++.++..+.++..+++.+.. ++..+..++..+.
T Consensus 139 n~LLk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~ 213 (451)
T PRK06305 139 NSLLKTLEEP--PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQ 213 (451)
T ss_pred HHHHHHhhcC--CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7888898864 4477888888988999999998 87 478999999999998888888776654 3345777888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
| +.+++.+.++..... . ...|+.+++.+.+
T Consensus 214 g-dlr~a~~~Lekl~~~-----~-~~~It~~~V~~l~ 243 (451)
T PRK06305 214 G-SLRDAESLYDYVVGL-----F-PKSLDPDSVAKAL 243 (451)
T ss_pred C-CHHHHHHHHHHHHHh-----c-cCCcCHHHHHHHH
Confidence 7 556666665544322 1 1336666665544
No 167
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=7.7e-13 Score=160.39 Aligned_cols=188 Identities=20% Similarity=0.272 Sum_probs=138.2
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL------------ 357 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~------------ 357 (957)
.+..+|++|.|.+.+++.|++++... +.+..+||+|||||||||+||++|+.+++.-
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 34567899999999999999886432 2244579999999999999999999886531
Q ss_pred ------------EEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 358 ------------FTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 358 ------------i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
+.+++.+ ...-..+|.+.+.+. .+...|+||||+|.|. ....+.|+.
T Consensus 79 C~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLK 141 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLK 141 (944)
T ss_pred HHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHH
Confidence 1122111 011223455554433 2345799999999983 345677888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. .+++.+|++|+.+..|.+.+++ |+ ..+.|..++.++..+.++..+...+..+.+..++.++..+.|- .+
T Consensus 142 tLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd-~R 215 (944)
T PRK14949 142 TLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGS-MR 215 (944)
T ss_pred HHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HH
Confidence 88873 4577888889999999999988 76 4589999999999999998887777778888999999988774 45
Q ss_pred HHHHHHHHHH
Q 002169 502 DLAALCNEAA 511 (957)
Q Consensus 502 Di~~l~~~A~ 511 (957)
++..++..+.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 168
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=1e-12 Score=154.47 Aligned_cols=189 Identities=19% Similarity=0.278 Sum_probs=142.9
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN------------- 356 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~------------- 356 (957)
..+.+|+++.|.+..++.|+..+... +.+..+||+||+||||||+|+++|+.+++.
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 34567899999999999888875322 335689999999999999999999988652
Q ss_pred ---------------EEEEecccccccccchhHHHHHHHHHHHhcc----CCeEEEEcCccccccCCcCCCchHHHHHHH
Q 002169 357 ---------------LFTVNGPEVVSQNYGESEQALHEVFDSASQS----APAVVFIDELDAIAPARKDGGEELSQRMVA 417 (957)
Q Consensus 357 ---------------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~----~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~ 417 (957)
++++++.+ ......++.+++.+... ...|++|||+|.+.. ...+
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~n 146 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFN 146 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHH
Confidence 12222111 12234667777766432 356999999998842 3456
Q ss_pred HHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 418 TLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 418 ~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
.|+..|+. ....+++|++|+.++.+.+++++ |+ ..+++..++.++..++++..+...+..+++..++.++..+.|
T Consensus 147 aLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G 221 (507)
T PRK06645 147 ALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG 221 (507)
T ss_pred HHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 67777776 35578888889889999999988 76 458899999999999999999988888889999999998877
Q ss_pred CcHHHHHHHHHHHHH
Q 002169 498 FVGADLAALCNEAAL 512 (957)
Q Consensus 498 ~~gaDi~~l~~~A~~ 512 (957)
+.+++.++++.+..
T Consensus 222 -slR~al~~Ldkai~ 235 (507)
T PRK06645 222 -SARDAVSILDQAAS 235 (507)
T ss_pred -CHHHHHHHHHHHHH
Confidence 66777777766643
No 169
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=8.4e-13 Score=150.81 Aligned_cols=186 Identities=20% Similarity=0.268 Sum_probs=136.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
.+.+|+++.|.+..++.++..+... +.+..+||+|||||||||+|+++|+.+.+.
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 4567899999999999998886332 224468999999999999999999987532
Q ss_pred ----------EEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 357 ----------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 357 ----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
++.+++.+ ...-..++.+.+.+.. ....|++|||+|.+. ....+.|+..
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-----------~~a~naLLk~ 142 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-----------HHHHHHHHHH
Confidence 22222211 0122345666665432 234699999999883 2234567888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
++.. ...+.+|++|+.++.+.+.+++ |+ ..+++..|+.++..++++..+...+..+++..++.++..+.| ..++
T Consensus 143 lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~ 216 (363)
T PRK14961 143 LEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRD 216 (363)
T ss_pred HhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8763 4567788888888889999988 76 458999999999999999988888888889999999998876 4556
Q ss_pred HHHHHHHH
Q 002169 503 LAALCNEA 510 (957)
Q Consensus 503 i~~l~~~A 510 (957)
+..+++.+
T Consensus 217 al~~l~~~ 224 (363)
T PRK14961 217 ALNLLEHA 224 (363)
T ss_pred HHHHHHHH
Confidence 66666554
No 170
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=1.5e-12 Score=156.12 Aligned_cols=213 Identities=18% Similarity=0.174 Sum_probs=153.8
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEe-C--
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVK-G-- 713 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~-~-- 713 (957)
.....+.+|++++|++.+++.|..++.. -+.+..+||+||+|+|||++|+++|+.+++.....+ +
T Consensus 15 a~KyRP~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HhhhCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 3445667899999999999999888753 245677999999999999999999998865322111 0
Q ss_pred ------------------CCccccc--ccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 714 ------------------PELFSKW--VGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 714 ------------------~~l~~~~--vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
++++... .......+|.+++.+... ...|++|||+|.+. ....
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-------------~~a~ 149 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-------------TAAF 149 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-------------HHHH
Confidence 1111000 011245678888776533 35799999999773 3457
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~ 848 (957)
+.|+..|+.. ...+.+|++|+.++.+.+.+++ |+ ..+.|+.++.++....++..+++.+...+ ..+..+++.+.
T Consensus 150 naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~ 224 (598)
T PRK09111 150 NALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAE 224 (598)
T ss_pred HHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7899888854 4468888888888888889888 87 58999999999999999988887765433 45677788888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
| +.+++.++++.++... ...||.+++...+.
T Consensus 225 G-dlr~al~~Ldkli~~g------~g~It~e~V~~llg 255 (598)
T PRK09111 225 G-SVRDGLSLLDQAIAHG------AGEVTAEAVRDMLG 255 (598)
T ss_pred C-CHHHHHHHHHHHHhhc------CCCcCHHHHHHHhC
Confidence 7 7888888887765332 23577777776654
No 171
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.48 E-value=4.6e-13 Score=151.08 Aligned_cols=240 Identities=24% Similarity=0.332 Sum_probs=161.0
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcC-CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-cccc-
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIG-TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVG- 722 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~-~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~-~~vg- 722 (957)
..|+||+++|+.+..++...++.......+. -..+.++||+||||||||++|++||..++.+|+.+++.++.. .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 4589999999999888753222211111111 113578999999999999999999999999999999998875 6888
Q ss_pred chHHHHHHHHHHHH------------------------------------------------------------------
Q 002169 723 ESEKAVRSLFAKAR------------------------------------------------------------------ 736 (957)
Q Consensus 723 ~~~~~ir~~f~~A~------------------------------------------------------------------ 736 (957)
..+..++.+|+.|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 44566666666651
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 002169 737 ------------------------------------------------------------------------ANAPSIIF 744 (957)
Q Consensus 737 ------------------------------------------------------------------------~~~p~ILf 744 (957)
...-.|+|
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01224999
Q ss_pred EeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------cCCcEEEEEec----CCCCCCChhhhCCCCcceecc
Q 002169 745 FDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTVIAAT----NRPDKIDPALLRPGRFDRLLY 812 (957)
Q Consensus 745 iDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~VI~aT----N~~~~id~aLlr~gRfd~~i~ 812 (957)
|||||.++...+. .+..-...-++..||..|+|-. ...++++|++- ..|+.+-|.|. |||..++.
T Consensus 255 iDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 255 IDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EEcchhhcccCCC-CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 9999999876432 1222233558889999999732 34578888764 35666778887 49999999
Q ss_pred cCCCCHHHHHHHHHH----HHh-------cCCCC---CcccHHHHHHHc-------cCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 813 VGPPNETDREEIFRI----HLR-------KIPCS---SDVNIRELACLS-------EGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 813 ~~~P~~~er~~Il~~----~l~-------~~~~~---~~~~l~~la~~t-------~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
+..++.++..+||.. ..+ -.++. .+..+.++|+.+ ++.-+|-|+.++.+....+.-+.-
T Consensus 332 L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p 411 (443)
T PRK05201 332 LDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAP 411 (443)
T ss_pred CCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCC
Confidence 999999999888831 222 12222 233456666554 344467888888877766654432
Q ss_pred C----CCCCCHHHHHHHHHhh
Q 002169 872 D----ASRITMQHLKTAIRHV 888 (957)
Q Consensus 872 ~----~~~It~~d~~~al~~~ 888 (957)
+ ...|+.+.+...+..+
T Consensus 412 ~~~~~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 412 DMSGETVTIDAAYVDEKLGDL 432 (443)
T ss_pred CCCCCEEEECHHHHHHHHHHH
Confidence 1 2346666666555543
No 172
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.7e-12 Score=155.81 Aligned_cols=209 Identities=16% Similarity=0.195 Sum_probs=146.5
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
..++.+|++|+|++.+++.|+.++.. -+.+.++||+||+||||||+|+++|+.+...
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 45677899999999999999887752 2456679999999999999999999988652
Q ss_pred ---------------------EEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCC
Q 002169 708 ---------------------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGV 762 (957)
Q Consensus 708 ---------------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~ 762 (957)
++.+++.. ......++.+.+.+. .....|++|||+|.+.
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s------~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt---------- 140 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS---------- 140 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC----------
Confidence 12222111 012456677666663 2345699999999773
Q ss_pred cchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHH
Q 002169 763 SVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIR 841 (957)
Q Consensus 763 ~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~ 841 (957)
....+.|+..|+.. ...+++|++|+.++.+-+++.+ |+ .++.|..++.++....++..+.+.+.. .+..+.
T Consensus 141 ---~~a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~ 212 (620)
T PRK14954 141 ---TAAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQ 212 (620)
T ss_pred ---HHHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 33467888888854 3457777778888889999988 76 589999999999888888877766643 344577
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 842 ELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 842 ~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
.++..+.| +.+++.+.++.....+. ..-+...|+.+++.+.+
T Consensus 213 ~La~~s~G-dlr~al~eLeKL~~y~~-~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 213 LIARKAQG-SMRDAQSILDQVIAFSV-GSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHhcc-ccccCCccCHHHHHHHH
Confidence 78888887 66666666665544431 00123456666665544
No 173
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.48 E-value=4.3e-13 Score=157.64 Aligned_cols=191 Identities=16% Similarity=0.247 Sum_probs=132.7
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
...++||||+|||||+|++++++++ +..++.+++.++...+..........-|..... .+.+|+|||+|.+...
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC
Confidence 3569999999999999999999987 456778888776554433322111122222222 4679999999987432
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHHH
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHL 829 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l 829 (957)
. .....++..++.+......+||+++..|.. +++.+.+ ||. .++.+.+|+.++|.+|++..+
T Consensus 227 ~-----------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 227 E-----------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred H-----------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 1 223345555555544444455555555544 6788888 885 478999999999999999999
Q ss_pred hcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 830 RKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 830 ~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
...++. ++..++.+|....| +.|++..+++.....+... ...||...+++++..+
T Consensus 294 ~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~---~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 294 EEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT---GKPITLELAKEALKDL 349 (450)
T ss_pred HHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh---CCCCCHHHHHHHHHHh
Confidence 865543 34457888888887 8899999998776665543 3568888888888875
No 174
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.48 E-value=1.6e-12 Score=145.83 Aligned_cols=158 Identities=20% Similarity=0.280 Sum_probs=112.2
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
..+.++++++|++++++.+..++.. -..+..++|+||||+|||++|++++++.+.+++.+++.+ ..
T Consensus 15 yrP~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~ 80 (316)
T PHA02544 15 YRPSTIDECILPAADKETFKSIVKK------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR 80 (316)
T ss_pred cCCCcHHHhcCcHHHHHHHHHHHhc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc
Confidence 4566889999999999999888752 223455677999999999999999999999999998876 22
Q ss_pred cccchHHHHHHHHHHHH-hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 720 WVGESEKAVRSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~-~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
+......+........ ...+.+|+|||+|.+.. ......|...++.. ..++.+|++||.+..++
T Consensus 81 -~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 -IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL------------ADAQRHLRSFMEAY--SKNCSFIITANNKNGII 145 (316)
T ss_pred -HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC------------HHHHHHHHHHHHhc--CCCceEEEEcCChhhch
Confidence 1111111222211111 13578999999997621 11233444556643 34678899999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHH
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHL 829 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l 829 (957)
+++++ ||. .+.++.|+.+++..+++.+.
T Consensus 146 ~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 146 EPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 99998 884 78999999999987776543
No 175
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.1e-12 Score=153.12 Aligned_cols=188 Identities=18% Similarity=0.236 Sum_probs=144.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
.+.+|+++.|.+..++.|++.+... +.+..+||+||+|+||||+|+++|+.+.+
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 4567899999999999988775322 33568999999999999999999986532
Q ss_pred ---------cEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 356 ---------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 356 ---------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
.++++++.+- ..-..++.+.+.+.. ....|++|||+|.+.. ...+.|+..
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaLLK~ 139 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNALLKT 139 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHHHHH
Confidence 3455555432 123456677766542 2357999999998842 345678888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+.. ...+.+|++|+.++.+.+.+++ |+ ..++|..++.++..+.++..+.+.+..+++..++.+++.+.| +.++
T Consensus 140 LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~ 213 (491)
T PRK14964 140 LEEP--APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRN 213 (491)
T ss_pred HhCC--CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8874 4568888889988999999998 66 348999999999999999999988888999999999999876 6667
Q ss_pred HHHHHHHHHH
Q 002169 503 LAALCNEAAL 512 (957)
Q Consensus 503 i~~l~~~A~~ 512 (957)
+.+++..+..
T Consensus 214 alslLdqli~ 223 (491)
T PRK14964 214 ALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 176
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=8.4e-13 Score=156.06 Aligned_cols=188 Identities=19% Similarity=0.243 Sum_probs=141.6
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN------------- 356 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~------------- 356 (957)
..+.+|+++.|.+.+++.|+.++... ..+..+||+||+||||||+|+++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 34567899999999999999986432 224468999999999999999999988642
Q ss_pred -----------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 357 -----------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 357 -----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
++++++.+- ..-..++.+.+.+. .....|+||||+|.+.. ...+.|+.
T Consensus 79 C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~naLLk 141 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNALLK 141 (509)
T ss_pred HHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHHHHH
Confidence 444544321 12234566665543 23356999999999842 34567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. ...+.+|++|+.+..+.+.+++ |+ ..++|..++.++....++..+...+..+++..++.++..+.| +.+
T Consensus 142 ~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR 215 (509)
T PRK14958 142 TLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVR 215 (509)
T ss_pred HHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 88874 4568888888889999989988 66 347899999999999999888888888889999999998865 567
Q ss_pred HHHHHHHHHH
Q 002169 502 DLAALCNEAA 511 (957)
Q Consensus 502 Di~~l~~~A~ 511 (957)
++.+++..+.
T Consensus 216 ~al~lLdq~i 225 (509)
T PRK14958 216 DALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHH
Confidence 7777776653
No 177
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.47 E-value=5.9e-13 Score=158.69 Aligned_cols=197 Identities=23% Similarity=0.314 Sum_probs=138.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEE
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTV 360 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i 360 (957)
...+|+++.|.+..++.++..+. ...+.++||+||||||||++|++++... +.+|+.+
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 44678899999999988876531 1235789999999999999999998652 3578999
Q ss_pred ecccccccccchhHHHH-----------------------HHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHH
Q 002169 361 NGPEVVSQNYGESEQAL-----------------------HEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVA 417 (957)
Q Consensus 361 ~~~~l~~~~~ge~e~~i-----------------------~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~ 417 (957)
+|........+-.+..+ ...+..+ ...+|||||+|.+.+ ...+
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~-----------~~q~ 193 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHP-----------VQMN 193 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCH-----------HHHH
Confidence 98632110000000000 0012222 246999999998843 3345
Q ss_pred HHHHHhhccc--------------------------cCCCeEEE-EecCCCCCchhhhhCCCCcceeeeecCCCHHHHHH
Q 002169 418 TLLNLMDGVC--------------------------RTDGVLVI-AATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLE 470 (957)
Q Consensus 418 ~Ll~~ld~l~--------------------------~~~~v~vI-~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~ 470 (957)
.|+..|+.-. ...++.+| +||+.++.++|++++ |+. ++.++.++.+++.+
T Consensus 194 ~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~ 270 (531)
T TIGR02902 194 KLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHH
Confidence 5666654310 01123444 556779999999999 874 58899999999999
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 471 ILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 471 Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
|++..+++....+++..++.++..+. +++++.++++.|+..+..+.
T Consensus 271 Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~ 316 (531)
T TIGR02902 271 IAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEG 316 (531)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCC
Confidence 99999998888889999998887654 78999999999988776543
No 178
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=2.2e-12 Score=155.58 Aligned_cols=187 Identities=19% Similarity=0.224 Sum_probs=138.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
+.+..+|++++|++++++.|..++.. -+...++||+||+|||||++|+++|+.++..
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 45667899999999999999888863 1234679999999999999999999987652
Q ss_pred ---------------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHH
Q 002169 708 ---------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRV 768 (957)
Q Consensus 708 ---------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v 768 (957)
++.++.. .......+|++++.+.. +...|+||||+|.| ....
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-------------t~~a 137 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-------------STAA 137 (620)
T ss_pred ccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-------------CHHH
Confidence 2222221 12345678888877753 23469999999977 3456
Q ss_pred HHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHc
Q 002169 769 MSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLS 847 (957)
Q Consensus 769 ~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t 847 (957)
.+.||..|+. ....+++|++|++++.+-+.+++ |+ ..+.|+.++.++....++..+.+.+.. ....+..+++.+
T Consensus 138 ~naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s 212 (620)
T PRK14948 138 FNALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRS 212 (620)
T ss_pred HHHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 7789999984 34578888889989999999988 87 578898888888877777777665443 234477788888
Q ss_pred cCCcHHHHHHHHHHH
Q 002169 848 EGCTGADISLICREA 862 (957)
Q Consensus 848 ~g~sg~dl~~l~~eA 862 (957)
.| +.+++.++++..
T Consensus 213 ~G-~lr~A~~lLekl 226 (620)
T PRK14948 213 QG-GLRDAESLLDQL 226 (620)
T ss_pred CC-CHHHHHHHHHHH
Confidence 87 556666666653
No 179
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=2.1e-12 Score=148.12 Aligned_cols=212 Identities=21% Similarity=0.237 Sum_probs=146.0
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc-
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL- 716 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l- 716 (957)
....+.+|++++|++.+++.+...+.. -+.+.++|||||||+|||++|+++|+.+..+........+
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIEN------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 345677899999999999999888753 2345689999999999999999999987542111000000
Q ss_pred -----ccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 717 -----FSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 717 -----~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
...........++.+++.+.. ..+.|++|||+|.+. ...++.++..++.. ....++
T Consensus 77 ~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-------------~~~~~~ll~~le~~--~~~~~~ 141 (367)
T PRK14970 77 FNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-------------SAAFNAFLKTLEEP--PAHAIF 141 (367)
T ss_pred cceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-------------HHHHHHHHHHHhCC--CCceEE
Confidence 000011234567777776643 235699999999663 23466788777753 335677
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++|+.+..+.+++.+ |+ ..+.+++|+.++...++...+.+.++. .+..+..++..+.| +.+.+.+.++..+..+
T Consensus 142 Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~ 217 (367)
T PRK14970 142 ILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC 217 (367)
T ss_pred EEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc
Confidence 7778888899999988 76 478999999999999998888777753 34557777887776 6677777776555432
Q ss_pred HHHhcCCCCCCHHHHHHHHH
Q 002169 867 IEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~ 886 (957)
- . .||.++++..+.
T Consensus 218 ~-----~-~it~~~v~~~~~ 231 (367)
T PRK14970 218 G-----K-NITRQAVTENLN 231 (367)
T ss_pred C-----C-CCCHHHHHHHhC
Confidence 1 1 266666665554
No 180
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.47 E-value=8.4e-13 Score=153.24 Aligned_cols=190 Identities=17% Similarity=0.273 Sum_probs=131.0
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccccccchHH-HHHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEK-AVRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~~vg~~~~-~ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
..+++||||+|||||.|++++++++ +..++.+++.++...+...... .+..+.+..+ .+.+|+|||+|.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 4568999999999999999999886 5678888877665443322111 1122222222 256999999998753
Q ss_pred hcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHH
Q 002169 754 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIH 828 (957)
Q Consensus 754 ~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~ 828 (957)
.. .....++..++........+||.++..|.. +++.+.+ ||. ..+.+++|+.++|..|++..
T Consensus 214 ~~-----------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 214 KE-----------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CH-----------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 21 223345555554433434445555444543 5678887 886 47899999999999999999
Q ss_pred HhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 829 LRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 829 l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
+...++. .+..++.+|....+ +.+++..+++.....|... ...||.+.+++++...
T Consensus 281 ~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~---~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 281 AEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLT---GKPITLELAKEALKDL 337 (405)
T ss_pred HHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHh
Confidence 9876654 34457788888886 8899999999877666543 3568888888888765
No 181
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.47 E-value=4.3e-12 Score=146.78 Aligned_cols=225 Identities=17% Similarity=0.210 Sum_probs=151.1
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCccc
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFS 718 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~ 718 (957)
.-+.++|.++..+++...+.... .-..+.+++++||||||||++++.+++++ +..++.+++....+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~---------~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL---------RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 33568898988888877764211 11334569999999999999999999876 46788898865422
Q ss_pred c----------cc-------cc-hHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc
Q 002169 719 K----------WV-------GE-SEKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL 779 (957)
Q Consensus 719 ~----------~v-------g~-~~~~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~ 779 (957)
. .. +. ....+..+.+.... ..+.||+|||+|.+.... ....+..++..++..
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~---------~~~~l~~l~~~~~~~ 169 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE---------GNDVLYSLLRAHEEY 169 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC---------CchHHHHHHHhhhcc
Confidence 1 11 11 12222333333332 456799999999886211 123455666655544
Q ss_pred ccCCcEEEEEecCCCC---CCChhhhCCCCcc-eecccCCCCHHHHHHHHHHHHhcC---CCCCcccHHHHHHHccCC--
Q 002169 780 HQRVNVTVIAATNRPD---KIDPALLRPGRFD-RLLYVGPPNETDREEIFRIHLRKI---PCSSDVNIRELACLSEGC-- 850 (957)
Q Consensus 780 ~~~~~v~VI~aTN~~~---~id~aLlr~gRfd-~~i~~~~P~~~er~~Il~~~l~~~---~~~~~~~l~~la~~t~g~-- 850 (957)
. ..++.+|+++|..+ .+++.+.+ ||. ..|+|++++.++..+|++..++.- ....+..++.+++.+.+.
T Consensus 170 ~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 170 P-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred C-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 3 23788999988764 46777776 553 578999999999999999887642 122334456677766432
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 851 TGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 851 sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
..+.+..+|+.|+..|..+. ...|+.+|+..|+..+.+.
T Consensus 247 d~r~a~~ll~~a~~~a~~~~--~~~I~~~~v~~a~~~~~~~ 285 (394)
T PRK00411 247 DARVAIDLLRRAGLIAEREG--SRKVTEEDVRKAYEKSEIV 285 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHHHH
Confidence 35666788888888887664 5679999999999887543
No 182
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.3e-12 Score=156.46 Aligned_cols=186 Identities=20% Similarity=0.289 Sum_probs=138.5
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|++|.|.+.+++.|+..+... +.+..+||+||+||||||+|+++|+.+++.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 4567899999999999998886432 124457999999999999999999988652
Q ss_pred ----------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 357 ----------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 357 ----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
++++++.+- ..-..++.+.+.+. .+...|+||||+|.|. ....+.|+..
T Consensus 80 ~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-----------~~a~NALLKt 142 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (647)
T ss_pred HHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-----------HHHHHHHHHH
Confidence 233333210 11233555555432 2345799999999884 3456778898
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+. ..+++.+|++|+.+..|.+.+++ |+ ..+.|..++.++..+.++..+...+..+++..+..++..+.|- .++
T Consensus 143 LEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs-~R~ 216 (647)
T PRK07994 143 LEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS-MRD 216 (647)
T ss_pred HHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHH
Confidence 887 35678888899999999999998 75 5699999999999999999887777777888899999888774 455
Q ss_pred HHHHHHHH
Q 002169 503 LAALCNEA 510 (957)
Q Consensus 503 i~~l~~~A 510 (957)
...++..+
T Consensus 217 Al~lldqa 224 (647)
T PRK07994 217 ALSLTDQA 224 (647)
T ss_pred HHHHHHHH
Confidence 55555544
No 183
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=1.6e-12 Score=148.81 Aligned_cols=187 Identities=19% Similarity=0.267 Sum_probs=132.3
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-----------------
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN----------------- 356 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~----------------- 356 (957)
.|++|+|.+.+++.|++++.....+ +..++...+..+||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~--~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARAD--VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccc--ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 3678999999999999998765332 222444567789999999999999999999876442
Q ss_pred ------EEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc
Q 002169 357 ------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV 426 (957)
Q Consensus 357 ------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l 426 (957)
+..+.... .. -.-..++.+++.+.. ....|+||||+|.+.. ...+.|++.|+..
T Consensus 81 ~~~hpD~~~i~~~~---~~--i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~-----------~aanaLLk~LEep 144 (394)
T PRK07940 81 AGTHPDVRVVAPEG---LS--IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE-----------RAANALLKAVEEP 144 (394)
T ss_pred cCCCCCEEEecccc---cc--CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH-----------HHHHHHHHHhhcC
Confidence 11221110 11 112346777776543 3356999999999842 2346688888874
Q ss_pred ccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHH
Q 002169 427 CRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAAL 506 (957)
Q Consensus 427 ~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l 506 (957)
..++++|++|+.++.+.|.+++ |+ ..+.|+.|+.++..+++... .+ +++.....++..++|..+..+.-+
T Consensus 145 --~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~--~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 145 --PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DG--VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred --CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cC--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 4456677777778999999999 76 46999999999887777632 22 356777889999999988776654
Q ss_pred HH
Q 002169 507 CN 508 (957)
Q Consensus 507 ~~ 508 (957)
..
T Consensus 215 ~~ 216 (394)
T PRK07940 215 TD 216 (394)
T ss_pred cC
Confidence 43
No 184
>PLN03025 replication factor C subunit; Provisional
Probab=99.46 E-value=1.2e-12 Score=147.05 Aligned_cols=177 Identities=17% Similarity=0.214 Sum_probs=127.7
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEecccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEV 365 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-----~~~i~i~~~~l 365 (957)
.+.+++++.|.+++++.|+.++... ...++||+||||||||++|+++|+++. ..++++++++.
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 3457889999999999988874321 123699999999999999999999872 24567776654
Q ss_pred cccccchhHHHHHHHHHHHh---ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 366 VSQNYGESEQALHEVFDSAS---QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 366 ~~~~~ge~e~~i~~vf~~a~---~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
.+. ......++..-+... ...+.|++|||+|.+.. ...+.|+..|+.. ...+.+|+++|...
T Consensus 76 ~~~--~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-----------~aq~aL~~~lE~~--~~~t~~il~~n~~~ 140 (319)
T PLN03025 76 RGI--DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-----------GAQQALRRTMEIY--SNTTRFALACNTSS 140 (319)
T ss_pred ccH--HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-----------HHHHHHHHHHhcc--cCCceEEEEeCCcc
Confidence 321 111222222111110 12367999999999853 2235567777654 23456788899888
Q ss_pred CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 443 SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 443 ~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
.+.+++++ |+ ..++|+.|+.++....++..+++.+..+++..++.++....|
T Consensus 141 ~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g 192 (319)
T PLN03025 141 KIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG 192 (319)
T ss_pred ccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999998 65 358999999999999999999888888899999999988765
No 185
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=2.7e-12 Score=153.13 Aligned_cols=189 Identities=20% Similarity=0.281 Sum_probs=142.3
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN------------- 356 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~------------- 356 (957)
....+|++|.|.+.+++.|+..+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 34567899999999999999986432 235679999999999999999999987542
Q ss_pred -----------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 357 -----------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 357 -----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
++++++.+ ......++.+++.+. .....|+||||+|.+. ....+.|+.
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NALLK 141 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAMLK 141 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHHHH
Confidence 12222211 112345677776543 2235799999999873 234567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. .+.+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+...+..+++..+..|++.+.| +.+
T Consensus 142 tLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slR 215 (709)
T PRK08691 142 TLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMR 215 (709)
T ss_pred HHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHH
Confidence 88863 4567888899999999999887 77 447888999999999999999988888899999999998865 567
Q ss_pred HHHHHHHHHHH
Q 002169 502 DLAALCNEAAL 512 (957)
Q Consensus 502 Di~~l~~~A~~ 512 (957)
++.+++..+..
T Consensus 216 dAlnLLDqaia 226 (709)
T PRK08691 216 DALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHH
Confidence 77777766543
No 186
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.43 E-value=1.7e-12 Score=138.46 Aligned_cols=177 Identities=19% Similarity=0.254 Sum_probs=133.2
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC------cEEEEeccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV------NLFTVNGPE 364 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~------~~i~i~~~~ 364 (957)
.+.+++++.|.+.+++.|+..+.- ....+.|||||||||||+.|+++|+++.. .+.+.+.++
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 345788999999999999888522 33558999999999999999999998855 234455555
Q ss_pred ccccccchhHHHHHHHHHHHhcc---------C-CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEE
Q 002169 365 VVSQNYGESEQALHEVFDSASQS---------A-PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLV 434 (957)
Q Consensus 365 l~~~~~ge~e~~i~~vf~~a~~~---------~-p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~v 434 (957)
-.+..+. ..+++ -|...... . +.|++|||.|.+. ....+.|...|+.. ...+.+
T Consensus 99 erGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----------sdaq~aLrr~mE~~--s~~trF 162 (346)
T KOG0989|consen 99 ERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----------SDAQAALRRTMEDF--SRTTRF 162 (346)
T ss_pred cccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh-----------HHHHHHHHHHHhcc--ccceEE
Confidence 4443211 11111 12221111 1 2699999999884 45567899999985 346789
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCC
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF 498 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~ 498 (957)
|+.||..+.|.+.+.+ |..+ +.|+....+.....|+.+..+.+..+++..++.+++.++|-
T Consensus 163 iLIcnylsrii~pi~S--RC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 163 ILICNYLSRIIRPLVS--RCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred EEEcCChhhCChHHHh--hHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 9999999999999988 7644 78888888899999999999999999999999999988874
No 187
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.43 E-value=4.6e-12 Score=145.75 Aligned_cols=219 Identities=21% Similarity=0.294 Sum_probs=150.1
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhhhh-h--cCC-CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cccch
Q 002169 298 LGGLSKEYAILKDIIISSSVKSTLS-S--LGL-RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYGE 372 (957)
Q Consensus 298 i~Gl~~~~~~l~e~i~~~~~~~~~~-~--l~i-~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~~ge 372 (957)
|.|++..++.|...+..+...-... . -.+ .+..++||+||||||||++|+++|..++.+|+.+++..+.. .|+|+
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 8999999999977765443321000 0 011 24678999999999999999999999999999999988764 57776
Q ss_pred h-HHHHHHHHHHH----hccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccc-----------cCCCeE
Q 002169 373 S-EQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVC-----------RTDGVL 433 (957)
Q Consensus 373 ~-e~~i~~vf~~a----~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~-----------~~~~v~ 433 (957)
. +..+..+++.+ ....++||||||+|.+.+++.+.+ +.....+...|+.+|++-. .....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 4 33445555432 234578999999999987643221 1122357788999998531 112345
Q ss_pred EEEecCCCC----------------------------------------------------CchhhhhCCCCcceeeeec
Q 002169 434 VIAATNRPD----------------------------------------------------SIEPALRRPGRLDREIEIA 461 (957)
Q Consensus 434 vI~ttN~~~----------------------------------------------------~ld~al~r~gRfd~~I~i~ 461 (957)
+|.|+|... -+.|.|. ||+|..+.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC
Confidence 566655400 0123443 4999999999
Q ss_pred CCCHHHHHHHHHH----HHc---------CCCCCCChHHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 462 VPSPAQRLEILHA----LLS---------GMEHSLLDSEVEYLSMA--THGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 462 ~P~~~~r~~Il~~----~l~---------~~~~~l~~~~l~~La~~--t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
..+.++..+|+.. +++ +..+.+++..++.+++. ...+-.+.|+.+++......+.+.
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 9999999999972 222 24456788999999986 456777889988888777766554
No 188
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.42 E-value=4e-12 Score=147.78 Aligned_cols=181 Identities=24% Similarity=0.331 Sum_probs=129.3
Q ss_pred cccccccCCcHHHHHH---HHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 292 EQDISKLGGLSKEYAI---LKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~---l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
..+++++.|.+..++. |+.++.. ....+++|+|||||||||+|+++|+.++..++.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 3567889999988766 7766522 123479999999999999999999999999999887532
Q ss_pred ccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC--CCC
Q 002169 369 NYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN--RPD 442 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN--~~~ 442 (957)
....++.+++.+. .....||||||+|.+.. .....|+..++. +.+++|++|+ ...
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~-----------~~q~~LL~~le~----~~iilI~att~n~~~ 133 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK-----------AQQDALLPHVED----GTITLIGATTENPSF 133 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-----------HHHHHHHHHhhc----CcEEEEEeCCCChhh
Confidence 1234455555543 23567999999998742 223456666653 4567777653 345
Q ss_pred CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCC--CC-CCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 443 SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGM--EH-SLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 443 ~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~--~~-~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
.+++++++ |+ ..+.+..++.++...+++..+... +. .+++..++.++..+.| ..+.+.++++.+
T Consensus 134 ~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~ 200 (413)
T PRK13342 134 EVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELA 200 (413)
T ss_pred hccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 78899998 77 568999999999999999876542 33 6778888999988855 344444444444
No 189
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.42 E-value=1.6e-11 Score=140.49 Aligned_cols=202 Identities=17% Similarity=0.219 Sum_probs=131.7
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---------CcEEEEeccccc
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---------VNLFTVNGPEVV 366 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~---------~~~i~i~~~~l~ 366 (957)
+++.|.+++++.|...+..... + ..+..++|+||||||||++++++++++. ..+++++|....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 4689999999999998754422 1 3356799999999999999999997652 467889986543
Q ss_pred ccc-------------------cc-hhHHHHHHHHHHHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhc
Q 002169 367 SQN-------------------YG-ESEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 425 (957)
Q Consensus 367 ~~~-------------------~g-e~e~~i~~vf~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~ 425 (957)
+.+ .+ ........+++... ...+.||+|||+|.+.... ..++.+|+.+.+.
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~~ 158 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARSN 158 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhccccc
Confidence 210 00 11223344444443 2346799999999997221 1233444444211
Q ss_pred c-ccCCCeEEEEecCCCC---CchhhhhCCCCcc-eeeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHHHc---
Q 002169 426 V-CRTDGVLVIAATNRPD---SIEPALRRPGRLD-REIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSMAT--- 495 (957)
Q Consensus 426 l-~~~~~v~vI~ttN~~~---~ld~al~r~gRfd-~~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~~t--- 495 (957)
. ....++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++..+.. ....+++..++.++...
T Consensus 159 ~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~ 236 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQE 236 (365)
T ss_pred cCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHh
Confidence 1 1235689999999876 46777777 664 56899999999999999988762 22335666666655543
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 002169 496 HGFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 496 ~g~~gaDi~~l~~~A~~~a~r 516 (957)
.|. .+.+..+|+.|+..|..
T Consensus 237 ~Gd-~R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 237 HGD-ARKAIDLLRVAGEIAER 256 (365)
T ss_pred cCC-HHHHHHHHHHHHHHHHH
Confidence 443 33445577777666644
No 190
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.42 E-value=4.7e-13 Score=153.40 Aligned_cols=260 Identities=21% Similarity=0.277 Sum_probs=180.5
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCc---
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPEL--- 716 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l--- 716 (957)
..+.+++|.....+++.+.+... ......||+.|++||||.++|++|...+ +.|||.+||..+
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 45678999999999998887542 3456679999999999999999998876 469999999654
Q ss_pred ------ccccccchHHHH---HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-------
Q 002169 717 ------FSKWVGESEKAV---RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------- 780 (957)
Q Consensus 717 ------~~~~vg~~~~~i---r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~------- 780 (957)
++...|.+..+. ...|+.|.++ .||||||..+ ...++..||..|+.-.
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m-------------pl~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM-------------PLELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC-------------CHHHHHHHHHHHHcCeeEecCCC
Confidence 443334333333 3578888888 9999999865 5667778888887431
Q ss_pred --cCCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHH--------HHHHHHHhcCCCC-CcccHHH
Q 002169 781 --QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDRE--------EIFRIHLRKIPCS-SDVNIRE 842 (957)
Q Consensus 781 --~~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~--------~Il~~~l~~~~~~-~~~~l~~ 842 (957)
-..+|.||+|||+.-. .+...|||.. ++.+..|...+|. ++++.+....+.. ..+.-+.
T Consensus 271 ~~i~vdvRiIaaT~~dL~---~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a 347 (464)
T COG2204 271 KPIKVDVRIIAATNRDLE---EEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEA 347 (464)
T ss_pred cccceeeEEEeecCcCHH---HHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 1347999999997643 4555677765 4455677777765 3444444545432 3344455
Q ss_pred HHHHcc-CC--cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH-----hhCCC-c-----hHHHHHHHHHHHHHhc
Q 002169 843 LACLSE-GC--TGADISLICREAAISAIEENLDASRITMQHLKTAIR-----HVQPS-E-----IHSYKELSAKFQRLVH 908 (957)
Q Consensus 843 la~~t~-g~--sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~-----~~~p~-~-----~~~y~~~~~~~~~~v~ 908 (957)
++.+.. .+ +.|+++++++.++..+- ...|+.+++...+. ...+. . ...+....+.+++.++
T Consensus 348 ~~~L~~y~WPGNVREL~N~ver~~il~~-----~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~I 422 (464)
T COG2204 348 LAALLAYDWPGNVRELENVVERAVILSE-----GPEIEVEDLPLEILAPAAEALAGPAGEAALPGLPLGEALAEVERQLI 422 (464)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHhcCC-----ccccchhhccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 544433 22 57999999999988763 33455555542210 00000 1 1347888889999999
Q ss_pred Cchhhhhcccccccchhhh---hhhhhccCCc
Q 002169 909 SNAEADESGYQLRPSKSIG---SNMWTLIKSI 937 (957)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~g---~~L~~~~k~~ 937 (957)
........++....++..| .+||.++|.-
T Consensus 423 ~~aL~~~~g~~~~aA~~LGi~R~tLy~Klk~~ 454 (464)
T COG2204 423 LQALERTGGNKSEAAERLGISRKTLYRKLKEY 454 (464)
T ss_pred HHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999988888888888887 8899998874
No 191
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1.7e-11 Score=147.99 Aligned_cols=190 Identities=22% Similarity=0.252 Sum_probs=141.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+.+|++|+|++.+++.|..++.. -+.+..+|||||+|+|||++|+++|+.+.+
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 34567899999999999999888752 234566999999999999999999998752
Q ss_pred -------------cEEEEeCCCcccccccchHHHHHHHHHHHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 707 -------------NFLAVKGPELFSKWVGESEKAVRSLFAKARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 707 -------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
+++.+++.+. .....++.+++.+... ...|++|||+|.+. ....
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-------------~~a~ 138 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-------------QAAF 138 (614)
T ss_pred chHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-------------HHHH
Confidence 3344443211 1245677777766433 24699999999773 3457
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~ 848 (957)
+.|+..|+.. ...+++|++|+....+-+++++ |+ .++.|.+++.++....++..+.+.++..+ ..+..++..+.
T Consensus 139 naLLK~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~ 213 (614)
T PRK14971 139 NAFLKTLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKAD 213 (614)
T ss_pred HHHHHHHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7899999864 3467788888888899999998 77 47999999999999999988887776543 34777888887
Q ss_pred CCcHHHHHHHHHHHHHH
Q 002169 849 GCTGADISLICREAAIS 865 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~ 865 (957)
| +.+++.+.+...+..
T Consensus 214 g-dlr~al~~Lekl~~y 229 (614)
T PRK14971 214 G-GMRDALSIFDQVVSF 229 (614)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 6 666666666655443
No 192
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=4.4e-12 Score=151.87 Aligned_cols=188 Identities=21% Similarity=0.293 Sum_probs=142.2
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-------------- 355 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~-------------- 355 (957)
-.+.+|+++.|.+.+++.|++.+... ..+..+||+||+|||||++|+.+|+.+.+
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 34567899999999999999886432 23556899999999999999999988743
Q ss_pred ----------cEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 356 ----------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 356 ----------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
+++.+++.+ +.....++.+.+.+.. ....|+||||+|.+.. ...+.|+.
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naLLK 141 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNALLK 141 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHHH
Confidence 234444321 1233456677666542 2357999999998842 34567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.++.. ...+++|++|+.++.+.+.+++ |+. .++|..|+.++..++++..+.+.+..+++..+..++..+.| ..+
T Consensus 142 tLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R 215 (559)
T PRK05563 142 TLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMR 215 (559)
T ss_pred HhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88763 4567888888889999999988 764 48899999999999999999888888888999999998876 666
Q ss_pred HHHHHHHHHH
Q 002169 502 DLAALCNEAA 511 (957)
Q Consensus 502 Di~~l~~~A~ 511 (957)
+..+++..+.
T Consensus 216 ~al~~Ldq~~ 225 (559)
T PRK05563 216 DALSILDQAI 225 (559)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 193
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.41 E-value=1.8e-12 Score=152.44 Aligned_cols=172 Identities=17% Similarity=0.268 Sum_probs=122.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
..+++||||||||||+|++++++++ +..++++++.++...+..........-|..... .+++|+|||+|.+..+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC
Confidence 4579999999999999999999887 556888998887665443332211122222212 4679999999988543
Q ss_pred CcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC---chhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcC
Q 002169 404 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLD--REIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~---ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
. .....|+..++.+...+..++|++...|.. +++.+++ ||. ..+++..|+.++|.+|++..+..
T Consensus 227 ~---------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 227 E---------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred H---------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 2 123456666666644555566655555554 6688888 885 46899999999999999999988
Q ss_pred CCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 002169 479 MEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 479 ~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
.+..++++.++.+|.+..| ..+.+..++......
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAY 329 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHH
Confidence 8888999999999998776 445565555554333
No 194
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.41 E-value=8e-12 Score=141.27 Aligned_cols=178 Identities=19% Similarity=0.299 Sum_probs=126.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-----~~~i~i~~~~l~ 366 (957)
+.+++++.|.+.+++.|..++... ...+++|+||||||||++|+++++++. .+++.+++.++.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 346788999999999988875321 123799999999999999999999874 346788887654
Q ss_pred ccc-------------cch-------hHHHHHHHHHHHhc-----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 367 SQN-------------YGE-------SEQALHEVFDSASQ-----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 367 ~~~-------------~ge-------~e~~i~~vf~~a~~-----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
... .+. ....++.+.+.... ..+.+|+|||+|.+.. .....|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~-----------~~~~~L~~ 147 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE-----------DAQQALRR 147 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------HHHHHHHH
Confidence 321 011 11233444333322 2356999999998732 22345666
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
.++... ....+|++++.+..+.+.+++ |+ ..+++..|+.++...+++..+.+.+..+++..++.++..+.|
T Consensus 148 ~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 148 IMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred HHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 776543 235566677767777788887 65 458999999999999999998888888899999999998744
No 195
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.41 E-value=1.5e-11 Score=146.91 Aligned_cols=182 Identities=21% Similarity=0.283 Sum_probs=126.5
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEecccc
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGPEV 365 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~~~l 365 (957)
+.|.|.+++++.|..++...+. +-.++..++|+|+||||||++++.+..++ ...+++|||..+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 5789999999999998765533 22233445699999999999999998765 256789999654
Q ss_pred ccccc----------------c-hhHHHHHHHHHHHhc--cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc
Q 002169 366 VSQNY----------------G-ESEQALHEVFDSASQ--SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV 426 (957)
Q Consensus 366 ~~~~~----------------g-e~e~~i~~vf~~a~~--~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l 426 (957)
...+. | .....+..+|..... ....||+|||||.|.... +.++-.|+.+..
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~-- 897 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPT-- 897 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhh--
Confidence 33210 1 122345566665422 235699999999997532 233333444332
Q ss_pred ccCCCeEEEEecCC---CCCchhhhhCCCCcce-eeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcC
Q 002169 427 CRTDGVLVIAATNR---PDSIEPALRRPGRLDR-EIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATH 496 (957)
Q Consensus 427 ~~~~~v~vI~ttN~---~~~ld~al~r~gRfd~-~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~ 496 (957)
.....++||+++|. ++.++|.+++ ||.. +|.|++++.+++.+||+..+......+++..++.+|....
T Consensus 898 ~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 898 KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 13456899999986 4567788888 5543 4889999999999999998886555678888888887544
No 196
>PRK06893 DNA replication initiation factor; Validated
Probab=99.41 E-value=5.8e-12 Score=134.82 Aligned_cols=181 Identities=8% Similarity=0.105 Sum_probs=115.7
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK 757 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~ 757 (957)
..++||||||||||+|++|+|+++ +.....+...+. ......+++... +..+|+|||++.+....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 347999999999999999999886 233333333211 111123333332 34699999999874321
Q ss_pred CCCCCcchHHHHHHHHHHHhccccCCcEE-EEEecCCCCCC---ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC
Q 002169 758 ESDGVSVSDRVMSQLLVELDGLHQRVNVT-VIAATNRPDKI---DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP 833 (957)
Q Consensus 758 ~~~~~~~~~~v~~~LL~~ld~~~~~~~v~-VI~aTN~~~~i---d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~ 833 (957)
... ..++..++.....+..+ |+.++..|..+ .+.+.++.++...+.++.|+.+++.+|++..+...+
T Consensus 108 ------~~~---~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 ------EWE---LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ------HHH---HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 111 23444444443333334 44455556554 488988445567889999999999999998887655
Q ss_pred CC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 834 CS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 834 ~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
+. .+.-+..|++...| +.+.+..+++.....+..+ ...||...+++++.
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~---~~~it~~~v~~~L~ 228 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQA---QRKLTIPFVKEILG 228 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHhc
Confidence 54 33456788888887 7888888887653333322 34689888887663
No 197
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.41 E-value=6.6e-12 Score=140.88 Aligned_cols=177 Identities=20% Similarity=0.297 Sum_probs=124.7
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
+.+++++.|.+.+++.++..+... ..+..++|+||||+|||++|++++++++.+++.+++.+ .. ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~ 82 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-----------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-ID 82 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HH
Confidence 457889999999999999886421 22445666999999999999999999999999999876 22 22
Q ss_pred hhHHHHHHHHHHHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhC
Q 002169 372 ESEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRR 450 (957)
Q Consensus 372 e~e~~i~~vf~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r 450 (957)
.....+........ ...+.+|+|||+|.+.. ......|...++.. ..++.+|+++|.++.+.+++++
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~le~~--~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 83 FVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSFMEAY--SKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHHHHhc--CCCceEEEEcCChhhchHHHHh
Confidence 22222322222211 13478999999998721 11234455566654 3567889999999999999998
Q ss_pred CCCcceeeeecCCCHHHHHHHHHHHHc-------CCCCCCChHHHHHHHHHcCC
Q 002169 451 PGRLDREIEIAVPSPAQRLEILHALLS-------GMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 451 ~gRfd~~I~i~~P~~~~r~~Il~~~l~-------~~~~~l~~~~l~~La~~t~g 497 (957)
||. .+.++.|+.+++.++++..+. ..+..+++..+..++....|
T Consensus 151 --R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 151 --RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred --hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 884 589999999999877664332 33556677777888876554
No 198
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.41 E-value=5.3e-12 Score=134.47 Aligned_cols=202 Identities=12% Similarity=0.203 Sum_probs=130.3
Q ss_pred ccccccC--ChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcc
Q 002169 643 VKWEDVG--GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELF 717 (957)
Q Consensus 643 v~~~di~--G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~ 717 (957)
.+|++.+ +...+.+.+++++. ...+.+++|+||+|||||++|++++.++ +.+++.+++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 3455554 45566666666542 2346679999999999999999999876 4677888876654
Q ss_pred cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecC-CCCC
Q 002169 718 SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN-RPDK 796 (957)
Q Consensus 718 ~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN-~~~~ 796 (957)
... ..++.... .+.+|+|||+|.+.... .....+...++....... .+|++++ .+..
T Consensus 79 ~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~-----------~~~~~L~~~l~~~~~~~~-~iIits~~~~~~ 136 (226)
T TIGR03420 79 QAD--------PEVLEGLE--QADLVCLDDVEAIAGQP-----------EWQEALFHLYNRVREAGG-RLLIAGRAAPAQ 136 (226)
T ss_pred HhH--------HHHHhhcc--cCCEEEEeChhhhcCCh-----------HHHHHHHHHHHHHHHcCC-eEEEECCCChHH
Confidence 321 23333322 23599999999873210 112234444443322223 4555555 3333
Q ss_pred C---ChhhhCCCCc--ceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHh
Q 002169 797 I---DPALLRPGRF--DRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 797 i---d~aLlr~gRf--d~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
+ ++.+.+ || ...+.+++|+.+++..+++....+.++. .+..+..|+....| +.+++.++++++...+..+
T Consensus 137 ~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~~~~~- 212 (226)
T TIGR03420 137 LPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDRASLAA- 212 (226)
T ss_pred CCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh-
Confidence 2 267776 65 4688999999999999999877655543 33346777776555 8999999999877655543
Q ss_pred cCCCCCCHHHHHHHH
Q 002169 871 LDASRITMQHLKTAI 885 (957)
Q Consensus 871 ~~~~~It~~d~~~al 885 (957)
...|+.+.+.+.+
T Consensus 213 --~~~i~~~~~~~~~ 225 (226)
T TIGR03420 213 --KRKITIPFVKEVL 225 (226)
T ss_pred --CCCCCHHHHHHHh
Confidence 3568888777665
No 199
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.41 E-value=8.2e-12 Score=151.93 Aligned_cols=135 Identities=25% Similarity=0.315 Sum_probs=89.7
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc------ccccc-----cchHHHHHHHHHHHHhCCCeEEEEe
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL------FSKWV-----GESEKAVRSLFAKARANAPSIIFFD 746 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l------~~~~v-----g~~~~~ir~~f~~A~~~~p~ILfiD 746 (957)
...+++||-|.||+|||+++.|+|++.|...++++.++- ++.++ |++.-.-..++...+.+. .+++|
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~--WVlLD 1618 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGG--WVLLD 1618 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCC--EEEee
Confidence 456889999999999999999999999999999998753 33222 211111123344444443 99999
Q ss_pred CCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc------------ccCCcEEEEEecCCCC------CCChhhhCCCCcc
Q 002169 747 EIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL------------HQRVNVTVIAATNRPD------KIDPALLRPGRFD 808 (957)
Q Consensus 747 Eid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~------------~~~~~v~VI~aTN~~~------~id~aLlr~gRfd 808 (957)
|+.- ++..++..|=..||.. ....+.+|.+|-|..+ .++..++. ||.
T Consensus 1619 EiNL-------------aSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs 1683 (4600)
T COG5271 1619 EINL-------------ASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS 1683 (4600)
T ss_pred hhhh-------------hHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh
Confidence 9862 2333444444444432 1234677777777554 47888888 995
Q ss_pred eecccCCCCHHHHHHHHHHHHh
Q 002169 809 RLLYVGPPNETDREEIFRIHLR 830 (957)
Q Consensus 809 ~~i~~~~P~~~er~~Il~~~l~ 830 (957)
++++..++..+..+|......
T Consensus 1684 -vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1684 -VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred -eEEecccccchHHHHHHhhCC
Confidence 778888888777777765554
No 200
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=5e-12 Score=151.24 Aligned_cols=187 Identities=18% Similarity=0.279 Sum_probs=138.3
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|+++.|.+..++.|++++... +.+..+||+||+||||||+|+++|+.+.+.
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 4567899999999999999986433 224467999999999999999999988642
Q ss_pred ---------------EEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHH
Q 002169 357 ---------------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVA 417 (957)
Q Consensus 357 ---------------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~ 417 (957)
++.+++.+ ...-..++++.+.+.. ....|++|||+|.|.. ...+
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~-----------~a~N 142 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN-----------TAFN 142 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH-----------HHHH
Confidence 22232211 0112346666665432 2246999999999842 2356
Q ss_pred HHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 418 TLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 418 ~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
.|+..|+. ....+.+|++|+.+..+.+.+++ |+ ..++|..++.++..+.++..+.+.+..+++..++.++..+.|
T Consensus 143 aLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G 217 (618)
T PRK14951 143 AMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG 217 (618)
T ss_pred HHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 68888876 34567888888888899989988 65 458999999999999999998888888889999999998876
Q ss_pred CcHHHHHHHHHHHH
Q 002169 498 FVGADLAALCNEAA 511 (957)
Q Consensus 498 ~~gaDi~~l~~~A~ 511 (957)
+.+++.+++..+.
T Consensus 218 -slR~al~lLdq~i 230 (618)
T PRK14951 218 -SMRDALSLTDQAI 230 (618)
T ss_pred -CHHHHHHHHHHHH
Confidence 5566666665443
No 201
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=7.1e-12 Score=151.41 Aligned_cols=205 Identities=18% Similarity=0.225 Sum_probs=144.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------- 707 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------- 707 (957)
++...+|++|+|++++++.|+.++.. -+.+..+||+||+|+|||++|+++|+.++..
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 45667899999999999999887752 1334558999999999999999999887531
Q ss_pred --------------EEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHH
Q 002169 708 --------------FLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVM 769 (957)
Q Consensus 708 --------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~ 769 (957)
++.++... ......+|.+.+.+.. ....|+||||+|.|. ...+
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-------------~~a~ 137 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-------------TAAF 137 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-------------HHHH
Confidence 22222211 1123445666655433 234699999999763 3456
Q ss_pred HHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHcc
Q 002169 770 SQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSE 848 (957)
Q Consensus 770 ~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~ 848 (957)
+.|+..|+.. ...+++|++|+..+.+.+.+.+ |+. .+.|..++..+...+++..+.+.++. .+..+..++..+.
T Consensus 138 naLLk~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~ 212 (585)
T PRK14950 138 NALLKTLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAAT 212 (585)
T ss_pred HHHHHHHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7788888864 3467788888888888888887 764 78899999999998888888776654 3344677888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 849 GCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 849 g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
| +.+++.+.++..+.. ....|+.+++...+.
T Consensus 213 G-dlr~al~~LekL~~y------~~~~It~e~V~~ll~ 243 (585)
T PRK14950 213 G-SMRDAENLLQQLATT------YGGEISLSQVQSLLG 243 (585)
T ss_pred C-CHHHHHHHHHHHHHh------cCCCCCHHHHHHHhc
Confidence 7 777777777754432 134577777665443
No 202
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.40 E-value=2.2e-11 Score=145.40 Aligned_cols=217 Identities=19% Similarity=0.211 Sum_probs=142.0
Q ss_pred ccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCc-ceeeCCCCChhhHHHHHHHHHh----------CCcEEEEeC
Q 002169 645 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTG-ILMFGPPGCSKTLMARAVASEA----------GLNFLAVKG 713 (957)
Q Consensus 645 ~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~g-iLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v~~ 713 (957)
-+.+.|.++..++|..++.-.+. + ..+.+ ++++|+||||||++++.+.+++ ...++.|+|
T Consensus 754 PD~LPhREeEIeeLasfL~paIk--------g-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK--------Q-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh--------c-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 36789999999999888753221 1 22334 4699999999999999998765 256788998
Q ss_pred CCccccc----------------cc-chHHHHHHHHHHHH--hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHH
Q 002169 714 PELFSKW----------------VG-ESEKAVRSLFAKAR--ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLV 774 (957)
Q Consensus 714 ~~l~~~~----------------vg-~~~~~ir~~f~~A~--~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~ 774 (957)
..+...+ .| .....+..+|.... .....||+|||||.|... ...++-.|+.
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK----------~QDVLYnLFR 894 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK----------TQKVLFTLFD 894 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc----------HHHHHHHHHH
Confidence 6543221 01 12234455665542 233569999999998642 1233333444
Q ss_pred HHhccccCCcEEEEEecCCC---CCCChhhhCCCCcce-ecccCCCCHHHHHHHHHHHHhcCC-CCCcccHHHHHHHcc-
Q 002169 775 ELDGLHQRVNVTVIAATNRP---DKIDPALLRPGRFDR-LLYVGPPNETDREEIFRIHLRKIP-CSSDVNIRELACLSE- 848 (957)
Q Consensus 775 ~ld~~~~~~~v~VI~aTN~~---~~id~aLlr~gRfd~-~i~~~~P~~~er~~Il~~~l~~~~-~~~~~~l~~la~~t~- 848 (957)
... .....+.||+++|.. +.+++.+.+ ||.. .|.|++++.+++.+||+..+.... ...+..+..+|+...
T Consensus 895 ~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq 970 (1164)
T PTZ00112 895 WPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVAN 970 (1164)
T ss_pred Hhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh
Confidence 332 234578999999864 456788887 6643 478899999999999999988642 223344566666333
Q ss_pred --CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 002169 849 --GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 849 --g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p 890 (957)
| ..|.+..+|+.|+..+ ....|+.+|+.+|+.++..
T Consensus 971 ~SG-DARKALDILRrAgEik-----egskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 971 VSG-DIRKALQICRKAFENK-----RGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred cCC-HHHHHHHHHHHHHhhc-----CCCccCHHHHHHHHHHHHh
Confidence 4 4555666676666532 2457999999999877543
No 203
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.40 E-value=1.8e-11 Score=141.61 Aligned_cols=202 Identities=16% Similarity=0.205 Sum_probs=133.0
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEeccccccc--
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQ-- 368 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~-- 368 (957)
+.+.|-+++++.|...+..... + ..+..++|+||||||||++++.+++++ +..++.++|....+.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~-------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~ 101 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR-------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYA 101 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC-------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHH
Confidence 3578999999999888754321 1 235679999999999999999999876 467889998654221
Q ss_pred --------ccc--------hhHHHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCC
Q 002169 369 --------NYG--------ESEQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDG 431 (957)
Q Consensus 369 --------~~g--------e~e~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~ 431 (957)
..+ ..+..+..+.+.... ..+.||+|||+|.+.... + ...+..|+..++... ..+
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~--~-----~~~l~~l~~~~~~~~-~~~ 173 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE--G-----NDVLYSLLRAHEEYP-GAR 173 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC--C-----chHHHHHHHhhhccC-CCe
Confidence 001 112223333333332 346799999999997211 1 134455655555442 236
Q ss_pred eEEEEecCCCC---CchhhhhCCCCcc-eeeeecCCCHHHHHHHHHHHHcCC--CCCCChHHHHHHHHHcCCCc--HHHH
Q 002169 432 VLVIAATNRPD---SIEPALRRPGRLD-REIEIAVPSPAQRLEILHALLSGM--EHSLLDSEVEYLSMATHGFV--GADL 503 (957)
Q Consensus 432 v~vI~ttN~~~---~ld~al~r~gRfd-~~I~i~~P~~~~r~~Il~~~l~~~--~~~l~~~~l~~La~~t~g~~--gaDi 503 (957)
+.+|+++|..+ .+++.+++ ||. ..|.+++++.++..+|++..++.- ...+++..++.+++.+.+.. .+.+
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a 251 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVA 251 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHH
Confidence 88999988764 46677766 553 468999999999999999887542 23467778888888774432 2344
Q ss_pred HHHHHHHHHHHH
Q 002169 504 AALCNEAALVCL 515 (957)
Q Consensus 504 ~~l~~~A~~~a~ 515 (957)
..+|..|+..|.
T Consensus 252 ~~ll~~a~~~a~ 263 (394)
T PRK00411 252 IDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHHHH
Confidence 456666655554
No 204
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.40 E-value=2.7e-12 Score=149.07 Aligned_cols=172 Identities=17% Similarity=0.275 Sum_probs=120.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHH-HHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~-~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
..+++||||+|+|||+|++++++++ +..++++++.++...+...... .+....+... .+++|+|||+|.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 4579999999999999999999877 5678889988776544322211 1112222222 357999999998864
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC---chhhhhCCCCcce--eeeecCCCHHHHHHHHHHHHc
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLDR--EIEIAVPSPAQRLEILHALLS 477 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~---ld~al~r~gRfd~--~I~i~~P~~~~r~~Il~~~l~ 477 (957)
+. .....|+..++.+...+..+||.+...|.. +++.+++ ||.. .+.++.|+.++|.+|++..+.
T Consensus 214 ~~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 214 KE---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred CH---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 32 122346666666544445555555555554 5577887 8864 689999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 478 GMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 478 ~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
..+..+++..++.+|.+..+ +.+++..+++.....+
T Consensus 283 ~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 283 EEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 88899999999999988765 4566666666544333
No 205
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=6.6e-12 Score=155.03 Aligned_cols=185 Identities=19% Similarity=0.242 Sum_probs=135.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|++|.|.+.+++.|+.++... +.+..+||+||+|||||++|++||+.+.+.
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 4567899999999999998886432 224458999999999999999999988642
Q ss_pred ------------EEEEecccccccccchhHHHHHHHHHHH----hccCCeEEEEcCccccccCCcCCCchHHHHHHHHHH
Q 002169 357 ------------LFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLL 420 (957)
Q Consensus 357 ------------~i~i~~~~l~~~~~ge~e~~i~~vf~~a----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll 420 (957)
++.+++.+.. .-..++.+.+.+ ......|+||||+|.|.. ...+.|+
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~NaLL 141 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFNALL 141 (824)
T ss_pred HHHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHHHHH
Confidence 2333332211 112334433322 234567999999999842 3456788
Q ss_pred HHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcH
Q 002169 421 NLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500 (957)
Q Consensus 421 ~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~g 500 (957)
+.|++. ...++||++|+.++.|.+.+++ |+ ..++|..++.++..++|+.++...++.+++..+..+++...| +.
T Consensus 142 K~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dl 215 (824)
T PRK07764 142 KIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SV 215 (824)
T ss_pred HHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888874 4578888889888999999998 65 458999999999999999998888888888888988888776 44
Q ss_pred HHHHHHHHH
Q 002169 501 ADLAALCNE 509 (957)
Q Consensus 501 aDi~~l~~~ 509 (957)
+++..+++.
T Consensus 216 R~Al~eLEK 224 (824)
T PRK07764 216 RDSLSVLDQ 224 (824)
T ss_pred HHHHHHHHH
Confidence 555555544
No 206
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.39 E-value=1.1e-11 Score=142.03 Aligned_cols=219 Identities=18% Similarity=0.281 Sum_probs=149.2
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhh--hh---cCC-CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cc
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTL--SS---LGL-RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QN 369 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~--~~---l~i-~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~ 369 (957)
.+.|+++.++.+...+......-.. .. -++ ....++||+||||||||++|+++|..++.+|..+++..+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 3799999999988776433222100 00 011 12468999999999999999999999999999999887753 46
Q ss_pred cchh-HHHHHHHHHHH----hccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccc-----------cCC
Q 002169 370 YGES-EQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVC-----------RTD 430 (957)
Q Consensus 370 ~ge~-e~~i~~vf~~a----~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~-----------~~~ 430 (957)
+|+. +..+..+++.+ ....++||||||+|.+.+++.... +.....+...|+..|++.. ...
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 7764 44455555432 234578999999999987643321 1112357778888887642 123
Q ss_pred CeEEEEecCCC---------------------------C-----------------------CchhhhhCCCCcceeeee
Q 002169 431 GVLVIAATNRP---------------------------D-----------------------SIEPALRRPGRLDREIEI 460 (957)
Q Consensus 431 ~v~vI~ttN~~---------------------------~-----------------------~ld~al~r~gRfd~~I~i 460 (957)
+.++|.|+|-. + .+.|+|. ||+|..+.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 46778777751 0 0224444 499999999
Q ss_pred cCCCHHHHHHHHHHH----Hc---------CCCCCCChHHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHH
Q 002169 461 AVPSPAQRLEILHAL----LS---------GMEHSLLDSEVEYLSMA--THGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 461 ~~P~~~~r~~Il~~~----l~---------~~~~~l~~~~l~~La~~--t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
...+.+++.+|+... ++ +..+.+++..++.+++. ...+-++.|+.+++...+..+-.
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 999999999998652 22 33455688899999987 45667788888888776666544
No 207
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=7.7e-12 Score=147.61 Aligned_cols=185 Identities=18% Similarity=0.280 Sum_probs=135.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
....|+++.|.+.+++.|+.++... ..+..+||+|||||||||+|+++|+.+.+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 4567899999999999999886432 23445799999999999999999988743
Q ss_pred --------cEEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHh
Q 002169 356 --------NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 423 (957)
Q Consensus 356 --------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~l 423 (957)
.++.+++.+- .....++.+.+.+. ...+.|++|||+|.+. ....+.|+..|
T Consensus 78 ~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLLk~L 140 (504)
T PRK14963 78 AVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALLKTL 140 (504)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHHHHH
Confidence 1444444311 11234555544332 2346799999998763 23456677777
Q ss_pred hccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHH
Q 002169 424 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 503 (957)
Q Consensus 424 d~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi 503 (957)
+.. ..++++|++++.++.+.+.+++ |+. .++|..|+.++..+.++..+...+..+++..++.++..+.|- .+++
T Consensus 141 Eep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gd-lR~a 214 (504)
T PRK14963 141 EEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGA-MRDA 214 (504)
T ss_pred HhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHH
Confidence 763 3567888889989999999988 654 589999999999999999998888888899999999988763 3444
Q ss_pred HHHHHH
Q 002169 504 AALCNE 509 (957)
Q Consensus 504 ~~l~~~ 509 (957)
.++++.
T Consensus 215 ln~Lek 220 (504)
T PRK14963 215 ESLLER 220 (504)
T ss_pred HHHHHH
Confidence 444443
No 208
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.1e-11 Score=147.80 Aligned_cols=186 Identities=19% Similarity=0.253 Sum_probs=135.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|++|.|.+.+++.|+.++... +.+..+||+||+||||||+|+++|+.+.+.
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~-----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAG-----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 3567899999999999999986432 234457999999999999999999887531
Q ss_pred ------------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHH
Q 002169 357 ------------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLL 420 (957)
Q Consensus 357 ------------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll 420 (957)
++++++.+.. .-..++++.+.+. .....|+||||+|.+.. ...+.|+
T Consensus 77 ~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~NALL 139 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFNALL 139 (584)
T ss_pred HHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHHHHH
Confidence 2333332211 1223444444332 23456999999998842 3556788
Q ss_pred HHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcH
Q 002169 421 NLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500 (957)
Q Consensus 421 ~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~g 500 (957)
..|+.. ...+++|++|+.++.+.+.+++ |. ..++|..++.++..+.+..++...+..+++..+..++..+.| ..
T Consensus 140 K~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-dl 213 (584)
T PRK14952 140 KIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-SP 213 (584)
T ss_pred HHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888873 4578899999999999999998 64 458999999999999999998888888888888888877654 44
Q ss_pred HHHHHHHHHH
Q 002169 501 ADLAALCNEA 510 (957)
Q Consensus 501 aDi~~l~~~A 510 (957)
+++.++++..
T Consensus 214 R~aln~Ldql 223 (584)
T PRK14952 214 RDTLSVLDQL 223 (584)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 209
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.1e-11 Score=146.54 Aligned_cols=187 Identities=21% Similarity=0.298 Sum_probs=135.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
.+.+|+++.|.+..++.|...+... +.+..+||+||+||||||+|+++|+.+.+
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 4567899999999999988886432 22445899999999999999999998754
Q ss_pred ---------cEEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 356 ---------NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 356 ---------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
.++.+++..- .| -..++.+++.+. .....|+||||+|.+. ....+.|+..
T Consensus 80 ~~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-----------~~a~naLLK~ 142 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-----------KQSFNALLKT 142 (546)
T ss_pred HHHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-----------HHHHHHHHHH
Confidence 2333332111 11 123455555443 2345799999999874 2355678888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+.. .+.+++|++|+.+..+.+.+++ |+ ..++|..++.++....++..+.+.+..+++..+..++..+.| +.++
T Consensus 143 LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR~ 216 (546)
T PRK14957 143 LEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLRD 216 (546)
T ss_pred HhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8873 4567788888888889888888 66 458999999999999999888887888889999999988865 4455
Q ss_pred HHHHHHHHH
Q 002169 503 LAALCNEAA 511 (957)
Q Consensus 503 i~~l~~~A~ 511 (957)
+..++..+.
T Consensus 217 alnlLek~i 225 (546)
T PRK14957 217 ALSLLDQAI 225 (546)
T ss_pred HHHHHHHHH
Confidence 555555443
No 210
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.39 E-value=1.3e-11 Score=138.38 Aligned_cols=207 Identities=23% Similarity=0.272 Sum_probs=140.2
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-----CcEEEEeCC
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKGP 714 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-----~~~i~v~~~ 714 (957)
..+.+|++++|++++++.+..++.. ....+++|+||||||||++|+++++++. .+++.++.+
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~ 77 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS 77 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc
Confidence 4557899999999999999888752 1123589999999999999999999873 345555544
Q ss_pred CcccccccchHHHHHHHHH-HHHh-----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEE
Q 002169 715 ELFSKWVGESEKAVRSLFA-KARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 788 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~-~A~~-----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI 788 (957)
+... ...++..+. .+.. ..+.+|+|||+|.+.. ...+.|+..++.... ...+|
T Consensus 78 ~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-------------~~~~~L~~~le~~~~--~~~lI 136 (319)
T PRK00440 78 DERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-------------DAQQALRRTMEMYSQ--NTRFI 136 (319)
T ss_pred cccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-------------HHHHHHHHHHhcCCC--CCeEE
Confidence 3211 111222222 1211 2356999999997732 234456666765433 45677
Q ss_pred EecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 002169 789 AATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAI 867 (957)
Q Consensus 789 ~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~ 867 (957)
+++|.+..+.+++.+ |+. ++.|++++.++...+++.++.+.+.. .+..+..++..+.| +.+.+.+.++.++..
T Consensus 137 l~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~~-- 210 (319)
T PRK00440 137 LSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAAT-- 210 (319)
T ss_pred EEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc--
Confidence 788888888888888 774 68999999999999999988877653 34457778888776 455555555543321
Q ss_pred HHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 868 EENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 868 ~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
...||.+++..++....+.
T Consensus 211 -----~~~it~~~v~~~~~~~~~~ 229 (319)
T PRK00440 211 -----GKEVTEEAVYKITGTARPE 229 (319)
T ss_pred -----CCCCCHHHHHHHhCCCCHH
Confidence 3468888888777654443
No 211
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.39 E-value=1.2e-11 Score=132.04 Aligned_cols=200 Identities=12% Similarity=0.155 Sum_probs=130.8
Q ss_pred CccccccC--ChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCc
Q 002169 642 KVKWEDVG--GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPEL 716 (957)
Q Consensus 642 ~v~~~di~--G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l 716 (957)
..+|++++ +...+...+.++.. +.....+++|+||+|||||++|++++++. +..++.+++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 45667655 33455555555443 22345679999999999999999999875 567777777654
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC-
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD- 795 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~- 795 (957)
... +. ......+|+|||+|.+.. .....|+..++........++|++++.+.
T Consensus 82 ~~~------------~~--~~~~~~~liiDdi~~l~~-------------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~ 134 (227)
T PRK08903 82 LLA------------FD--FDPEAELYAVDDVERLDD-------------AQQIALFNLFNRVRAHGQGALLVAGPAAPL 134 (227)
T ss_pred HHH------------Hh--hcccCCEEEEeChhhcCc-------------hHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 211 11 122356999999997631 11234455555443343434555554332
Q ss_pred --CCChhhhCCCCc--ceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHh
Q 002169 796 --KIDPALLRPGRF--DRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 796 --~id~aLlr~gRf--d~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
.+.+.+.+ || ...+.+++|+.+++..+++....+.++.- +..+..|++...| +.+++..+++.....|...
T Consensus 135 ~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~- 210 (227)
T PRK08903 135 ALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQ- 210 (227)
T ss_pred hCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh-
Confidence 24577776 66 46889999999999999988776655442 3356777887776 8899999998755444433
Q ss_pred cCCCCCCHHHHHHHHH
Q 002169 871 LDASRITMQHLKTAIR 886 (957)
Q Consensus 871 ~~~~~It~~d~~~al~ 886 (957)
...||...+++++.
T Consensus 211 --~~~i~~~~~~~~l~ 224 (227)
T PRK08903 211 --KRPVTLPLLREMLA 224 (227)
T ss_pred --CCCCCHHHHHHHHh
Confidence 46799988888875
No 212
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.39 E-value=1.1e-11 Score=131.98 Aligned_cols=183 Identities=22% Similarity=0.309 Sum_probs=126.3
Q ss_pred CCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHH
Q 002169 299 GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQ 375 (957)
Q Consensus 299 ~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~ 375 (957)
++.+..++.++.++. ...+.+++|+||+|||||++|++++.+. +.+++.+++.++....
T Consensus 20 ~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~------ 81 (226)
T TIGR03420 20 GGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD------ 81 (226)
T ss_pred CCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH------
Confidence 456677777777642 2346789999999999999999999876 4678889888775321
Q ss_pred HHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC-CCCCch---hhhhCC
Q 002169 376 ALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN-RPDSIE---PALRRP 451 (957)
Q Consensus 376 ~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN-~~~~ld---~al~r~ 451 (957)
..+++... .+.+|+|||+|.+.... .....|..+++.....+. .+|++++ .+..++ +.+.+
T Consensus 82 --~~~~~~~~--~~~lLvIDdi~~l~~~~---------~~~~~L~~~l~~~~~~~~-~iIits~~~~~~~~~~~~~L~~- 146 (226)
T TIGR03420 82 --PEVLEGLE--QADLVCLDDVEAIAGQP---------EWQEALFHLYNRVREAGG-RLLIAGRAAPAQLPLRLPDLRT- 146 (226)
T ss_pred --HHHHhhcc--cCCEEEEeChhhhcCCh---------HHHHHHHHHHHHHHHcCC-eEEEECCCChHHCCcccHHHHH-
Confidence 23333322 24599999999874321 112345555555433333 4455554 343322 66766
Q ss_pred CCc--ceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 002169 452 GRL--DREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 452 gRf--d~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~r 516 (957)
|+ ...+.++.|+.+++..+++.++.+....+++..++.|+.. -+-+.+++..+++++...+.+
T Consensus 147 -r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 147 -RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred -HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 55 4678999999999999999888777778899999999995 566788888888876544433
No 213
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=1e-11 Score=146.95 Aligned_cols=185 Identities=17% Similarity=0.263 Sum_probs=135.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
++.+|+++.|.+..++.|...+... ..+..+||+||+|+|||++|+++|+.+.+
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 3467889999999999988875321 23467999999999999999999988743
Q ss_pred ---------cEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 356 ---------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 356 ---------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
.++.+++.+. -.-..++.+.+.+.. ....|++|||+|.+.. ...+.|+..
T Consensus 80 r~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaLLKt 142 (605)
T PRK05896 80 ESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNALLKT 142 (605)
T ss_pred HHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHHHHH
Confidence 2333433221 112235566554432 2346999999998842 234678888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+.. ...+++|++|+.++.+.+++++ |+. .++|..++.++....++..+...+..+++..++.++..+.| ..++
T Consensus 143 LEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~ 216 (605)
T PRK05896 143 LEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRD 216 (605)
T ss_pred HHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHH
Confidence 8873 4578888899889999999998 664 48999999999999999988888878889999999998876 3455
Q ss_pred HHHHHHH
Q 002169 503 LAALCNE 509 (957)
Q Consensus 503 i~~l~~~ 509 (957)
+..+++.
T Consensus 217 AlnlLek 223 (605)
T PRK05896 217 GLSILDQ 223 (605)
T ss_pred HHHHHHH
Confidence 4455444
No 214
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.39 E-value=1.8e-11 Score=142.64 Aligned_cols=179 Identities=22% Similarity=0.317 Sum_probs=124.6
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHh--------CCCeEEEEeCCch
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARA--------NAPSIIFFDEIDG 750 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~--------~~p~ILfiDEid~ 750 (957)
+.+-+||+||||-||||||+.||+++|+.++.||+++-. +...++..+..|.. ..|..|++||||.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 334488999999999999999999999999999998853 34445555555433 5688999999992
Q ss_pred hhhhcCCCCCCCcchHHHHHHHHHHHhccc------cC----------C---cEEEEEecCCCCCCChhhhCCCCcceec
Q 002169 751 LAAIRGKESDGVSVSDRVMSQLLVELDGLH------QR----------V---NVTVIAATNRPDKIDPALLRPGRFDRLL 811 (957)
Q Consensus 751 l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~------~~----------~---~v~VI~aTN~~~~id~aLlr~gRfd~~i 811 (957)
.....++.++..+.... +. . -.-||+++|+... |||+.---|..+|
T Consensus 399 -------------a~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 399 -------------APRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEII 463 (877)
T ss_pred -------------CcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEE
Confidence 23555666666655110 00 0 1348999996544 6664222578899
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH
Q 002169 812 YVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLK 882 (957)
Q Consensus 812 ~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~ 882 (957)
+|++|...-..+-|+..+.+.++..+ ..+.+|+++|++ ||+.+++.....|....-....+...++-
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~~r~ds~i~~~~i~ 531 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFLASNVDRRDSSISVKLIC 531 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhcccccccchhhhhh
Confidence 99999988888888888877776544 245666666666 99999999888876654322334444443
No 215
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=6.8e-12 Score=146.45 Aligned_cols=191 Identities=15% Similarity=0.249 Sum_probs=126.9
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccccccchH-HHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESE-KAVRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~~vg~~~-~~ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
..+++||||+|||||.|++++|+++ +..++.+++.+++..+..... ..+.. |.......+.+|+|||++.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 3469999999999999999999875 356777777666544322111 11222 2222223578999999998753
Q ss_pred hcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHH
Q 002169 754 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIH 828 (957)
Q Consensus 754 ~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~ 828 (957)
.. .....++..++.+......+||++.+.|.. +++.+.+ ||. .++.+.+|+.+.|..|++..
T Consensus 209 ~~-----------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 209 KT-----------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred cH-----------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 21 122334444444444444455555566655 4567777 763 47789999999999999998
Q ss_pred HhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 829 LRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 829 l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
+...++. ++..+..+|+...| +.|++..++......+... ...||.+..+++++..
T Consensus 276 ~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~---~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 276 LEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT---GEEVDLKEAILLLKDF 332 (440)
T ss_pred HHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHH
Confidence 8754443 33347778888876 8899999998766555443 3568888887777754
No 216
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.37 E-value=1.4e-11 Score=140.40 Aligned_cols=185 Identities=23% Similarity=0.342 Sum_probs=135.4
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc---------------
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--------------- 356 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--------------- 356 (957)
+..|+++.|.+..++.|.+.+... ..+..+||+||||+|||++|+++|+.+...
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~-----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~ 78 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG-----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCK 78 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 356889999999999998876322 234578999999999999999999887432
Q ss_pred ---------EEEEecccccccccchhHHHHHHHHHHHhcc----CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHh
Q 002169 357 ---------LFTVNGPEVVSQNYGESEQALHEVFDSASQS----APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 423 (957)
Q Consensus 357 ---------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~----~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~l 423 (957)
++.+++.+ ......++.+++.+... ...|++|||+|.+.. ...+.|+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~Ll~~l 141 (355)
T TIGR02397 79 EINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNALLKTL 141 (355)
T ss_pred HHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHHHHHH
Confidence 33333321 11233466777765432 346999999988732 2345677777
Q ss_pred hccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHH
Q 002169 424 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 503 (957)
Q Consensus 424 d~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi 503 (957)
+.. ..++++|++|+.++.+.+++++ |+. .++++.|+.++..+++...+...+..+++..+..++..+.| ..+.+
T Consensus 142 e~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a 215 (355)
T TIGR02397 142 EEP--PEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDA 215 (355)
T ss_pred hCC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHH
Confidence 663 4567888888888888899988 764 58999999999999999999888888889999999988766 44444
Q ss_pred HHHHHHH
Q 002169 504 AALCNEA 510 (957)
Q Consensus 504 ~~l~~~A 510 (957)
.+.++.+
T Consensus 216 ~~~lekl 222 (355)
T TIGR02397 216 LSLLDQL 222 (355)
T ss_pred HHHHHHH
Confidence 4444443
No 217
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.37 E-value=2.6e-11 Score=130.35 Aligned_cols=179 Identities=12% Similarity=0.140 Sum_probs=114.1
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhC---CcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK 757 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~---~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~ 757 (957)
..++||||+|||||+|+++++++.. .....+...+... ....+++.... ..+|+|||++.+....
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~-- 113 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE-- 113 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH--
Confidence 4799999999999999999998764 2333333322111 11122222222 2489999999874221
Q ss_pred CCCCCcchHHHHHHHHHHHhccccCCcEEEEEecC-CCCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhc
Q 002169 758 ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN-RPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRK 831 (957)
Q Consensus 758 ~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN-~~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~ 831 (957)
.....+...++.....++..+|++|+ .|.. +.|.|.+ |+. .++.+.+|+.+++.++++.....
T Consensus 114 ---------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~ 182 (235)
T PRK08084 114 ---------LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARL 182 (235)
T ss_pred ---------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHH
Confidence 11122333333333333444555554 4444 5799998 875 68899999999999999987766
Q ss_pred CCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 832 IPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 832 ~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
.++. .+.-++.|++...| +.+.+..+++.....+..+ ...||...+++++.
T Consensus 183 ~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~---~~~it~~~~k~~l~ 234 (235)
T PRK08084 183 RGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASITA---QRKLTIPFVKEILK 234 (235)
T ss_pred cCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHHc
Confidence 5544 33457788888887 8888888888743333332 45689888887653
No 218
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.2e-11 Score=147.13 Aligned_cols=176 Identities=19% Similarity=0.245 Sum_probs=130.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|++|.|.+.+++.|+.++... +....+||+||+|||||++|+++|+.+.+.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 4567889999999999999886432 123579999999999999999999988652
Q ss_pred ----------EEEEecccccccccchhHHHHHHHHHHH----hccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 357 ----------LFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 357 ----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
++++++..-. .-..++.+.+.+ ......||||||+|.+. ....+.|+..
T Consensus 80 ~~i~~g~hpDv~eId~a~~~------~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~naLLk~ 142 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNR------GIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNALLKT 142 (624)
T ss_pred HHHhcCCCCceEEEeccccc------CHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHHHHHH
Confidence 3444432110 112233332222 22345799999999884 2345678888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCc
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 499 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ 499 (957)
|+.. ...+++|++|+.++.+.+.+++ |+. .++|..++.++..++|+..+...+..+++..++.++..+.|-.
T Consensus 143 LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gdl 214 (624)
T PRK14959 143 LEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSV 214 (624)
T ss_pred hhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 8763 4578899999998999988888 763 5899999999999999998888888889999999999887643
No 219
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=8.8e-12 Score=148.31 Aligned_cols=187 Identities=22% Similarity=0.314 Sum_probs=137.8
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|++|.|.+.+++.|...+... +.+..+||+||+||||||+|+++|+.+.+.
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 3467899999999999998886432 224568999999999999999999988652
Q ss_pred ----------EEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 357 ----------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 357 ----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
++.+++.. ......++.+++.+.. ....|+||||+|.+. ....+.|+..
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-----------~~a~naLLK~ 142 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-----------KSAFNAMLKT 142 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-----------HHHHHHHHHH
Confidence 22232211 1123356677766542 235699999999884 2345678888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+.. ...+.+|++|+.++.+.+.+++ |+ ..++|..++.++..+.+...+.+.+..+++..+..++..+.| +.++
T Consensus 143 LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~ 216 (527)
T PRK14969 143 LEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRD 216 (527)
T ss_pred HhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8873 4578888888888888888887 65 458999999999999998888777777788889999988765 4566
Q ss_pred HHHHHHHHH
Q 002169 503 LAALCNEAA 511 (957)
Q Consensus 503 i~~l~~~A~ 511 (957)
+.+++..+.
T Consensus 217 al~lldqai 225 (527)
T PRK14969 217 ALSLLDQAI 225 (527)
T ss_pred HHHHHHHHH
Confidence 666666553
No 220
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=1.1e-11 Score=144.81 Aligned_cols=169 Identities=14% Similarity=0.230 Sum_probs=117.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHH-HHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~-~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
..+++||||||||||+|++++++++ +..++++++.++...+...... .+.. |.......+++|+|||++.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 3569999999999999999999875 4577888888776554322111 1112 2222223578999999998854
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC---chhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHc
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLD--REIEIAVPSPAQRLEILHALLS 477 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~---ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~ 477 (957)
+. .....|+..++.+...+..+||++.+.|.. +.+.+++ ||. ..+.+..|+.+.|.+|++..+.
T Consensus 209 ~~---------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 209 KT---------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred cH---------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 32 122345566666544555555555566655 4567777 664 4678999999999999999998
Q ss_pred CCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 478 GMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 478 ~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
..+..++++.++.+++...| ..+.|..++...
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 88888999999999998776 445565555543
No 221
>PRK06893 DNA replication initiation factor; Validated
Probab=99.37 E-value=1.1e-11 Score=132.78 Aligned_cols=159 Identities=13% Similarity=0.163 Sum_probs=108.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcC
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKD 406 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~ 406 (957)
..++||||||||||+|++++|+++ +....+++..+. ......+++... ..++|+|||++.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 457999999999999999999875 334444443221 111123333332 35699999999885432
Q ss_pred CCchHHHHHHHHHHHHhhccccCCCeEEEE-ecCCCCCch---hhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCC
Q 002169 407 GGEELSQRMVATLLNLMDGVCRTDGVLVIA-ATNRPDSIE---PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHS 482 (957)
Q Consensus 407 ~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~-ttN~~~~ld---~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~ 482 (957)
.....|+.+++.....++.++|. ++..|..++ +.++++.++...+.++.|+.+++.+|++..+...+..
T Consensus 108 -------~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 108 -------EWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred -------HHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 12234666676665445444444 445566554 7888855556678999999999999999998888888
Q ss_pred CChHHHHHHHHHcCCCcHHHHHHHHH
Q 002169 483 LLDSEVEYLSMATHGFVGADLAALCN 508 (957)
Q Consensus 483 l~~~~l~~La~~t~g~~gaDi~~l~~ 508 (957)
++++.++.|+.+..|-. +.+..++.
T Consensus 181 l~~~v~~~L~~~~~~d~-r~l~~~l~ 205 (229)
T PRK06893 181 LSDEVANFLLKRLDRDM-HTLFDALD 205 (229)
T ss_pred CCHHHHHHHHHhccCCH-HHHHHHHH
Confidence 99999999999887633 33443333
No 222
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.36 E-value=8e-12 Score=141.12 Aligned_cols=213 Identities=23% Similarity=0.370 Sum_probs=148.2
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhh-hcCC-CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cccc-h
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLS-SLGL-RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYG-E 372 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~-~l~i-~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~~g-e 372 (957)
.|.|+++.++.+...+.....+..+. .+.. ..+.++||+||||||||++|+++|..++.+|+.+++.++.. .|+| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 38999999999988875432221111 1111 13589999999999999999999999999999999988875 5777 5
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 002169 373 SEQALHEVFDSAS------------------------------------------------------------------- 385 (957)
Q Consensus 373 ~e~~i~~vf~~a~------------------------------------------------------------------- 385 (957)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 5666677666650
Q ss_pred ---c--------------------------------------------------------------------cCCeEEEE
Q 002169 386 ---Q--------------------------------------------------------------------SAPAVVFI 394 (957)
Q Consensus 386 ---~--------------------------------------------------------------------~~p~IL~I 394 (957)
. ..-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12359999
Q ss_pred cCccccccCCcCCCch-HHHHHHHHHHHHhhcc--------ccCCCeEEEEec----CCCCCchhhhhCCCCcceeeeec
Q 002169 395 DELDAIAPARKDGGEE-LSQRMVATLLNLMDGV--------CRTDGVLVIAAT----NRPDSIEPALRRPGRLDREIEIA 461 (957)
Q Consensus 395 DEiD~l~~~~~~~~~~-~~~~i~~~Ll~~ld~l--------~~~~~v~vI~tt----N~~~~ld~al~r~gRfd~~I~i~ 461 (957)
||+|.|+.+.+..+.+ ....+...||.++++- -...++.||++. ..|+++-|.|. |||...+.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEECC
Confidence 9999999775433323 3345778899999883 334677888765 24556667775 4999999999
Q ss_pred CCCHHHHHHHHHH----HHc---------CCCCCCChHHHHHHHHHcC-------CCcHHHHHHHHHHHH
Q 002169 462 VPSPAQRLEILHA----LLS---------GMEHSLLDSEVEYLSMATH-------GFVGADLAALCNEAA 511 (957)
Q Consensus 462 ~P~~~~r~~Il~~----~l~---------~~~~~l~~~~l~~La~~t~-------g~~gaDi~~l~~~A~ 511 (957)
.++.++...||.. +++ +..+.+++..++.+|+.+. +.-.+-|..++....
T Consensus 334 ~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 334 ALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred CCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 9999999998832 222 2345567777888877643 333344555555443
No 223
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.36 E-value=4.5e-11 Score=129.55 Aligned_cols=130 Identities=25% Similarity=0.319 Sum_probs=92.5
Q ss_pred CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC------------CCCCChhhhCCCCc
Q 002169 740 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR------------PDKIDPALLRPGRF 807 (957)
Q Consensus 740 p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~------------~~~id~aLlr~gRf 807 (957)
|.||||||+|.| .-+.++-|-+.|+. .---+||+|||+ |+-|+..|+. |+
T Consensus 292 pGVLFIDEvHmL-------------DIE~FsFlnrAlEs---e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl 353 (450)
T COG1224 292 PGVLFIDEVHML-------------DIECFSFLNRALES---ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL 353 (450)
T ss_pred cceEEEechhhh-------------hHHHHHHHHHHhhc---ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--he
Confidence 679999999866 12223333334442 222367888886 4567888888 76
Q ss_pred ceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 808 DRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 808 d~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
-+|...+++.++.++|+++......+. .+..++.|+.....-|-|=..+++.-|...|.++. ...|..+|++.|..
T Consensus 354 -lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg--~~~V~~~dVe~a~~ 430 (450)
T COG1224 354 -LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRG--SKRVEVEDVERAKE 430 (450)
T ss_pred -eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhC--CCeeehhHHHHHHH
Confidence 477888999999999999999776654 34457788887776666777777777888887775 66789999998876
Q ss_pred hhCC
Q 002169 887 HVQP 890 (957)
Q Consensus 887 ~~~p 890 (957)
-...
T Consensus 431 lF~D 434 (450)
T COG1224 431 LFLD 434 (450)
T ss_pred HHhh
Confidence 5543
No 224
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.35 E-value=1.4e-11 Score=139.17 Aligned_cols=213 Identities=23% Similarity=0.374 Sum_probs=147.2
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhh-hhc-CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cccc-h
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTL-SSL-GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYG-E 372 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~-~~l-~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~~g-e 372 (957)
-+.|+++.++.+...+.....+..+ ..+ .-.++++|||+||||||||++|+++|..++.+|+.+++..+.. .|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 3889999999998776554332111 111 1224689999999999999999999999999999999988874 6777 5
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 002169 373 SEQALHEVFDSAS------------------------------------------------------------------- 385 (957)
Q Consensus 373 ~e~~i~~vf~~a~------------------------------------------------------------------- 385 (957)
.+..++.+|+.|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 6676676666540
Q ss_pred ------------------------------------------------------------------------ccCCeEEE
Q 002169 386 ------------------------------------------------------------------------QSAPAVVF 393 (957)
Q Consensus 386 ------------------------------------------------------------------------~~~p~IL~ 393 (957)
..+-.|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01245999
Q ss_pred EcCccccccCCcCCCch-HHHHHHHHHHHHhhcc--------ccCCCeEEEEecC----CCCCchhhhhCCCCcceeeee
Q 002169 394 IDELDAIAPARKDGGEE-LSQRMVATLLNLMDGV--------CRTDGVLVIAATN----RPDSIEPALRRPGRLDREIEI 460 (957)
Q Consensus 394 IDEiD~l~~~~~~~~~~-~~~~i~~~Ll~~ld~l--------~~~~~v~vI~ttN----~~~~ld~al~r~gRfd~~I~i 460 (957)
|||+|.++.+....+.+ ....+...||.++++- -...++.||++.- .|.++-|.|. |||...+.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEEC
Confidence 99999999765333322 3345778899999883 2346678887653 4556667775 599999999
Q ss_pred cCCCHHHHHHHHH----HHHc---------CCCCCCChHHHHHHHHHcC-------CCcHHHHHHHHHHHH
Q 002169 461 AVPSPAQRLEILH----ALLS---------GMEHSLLDSEVEYLSMATH-------GFVGADLAALCNEAA 511 (957)
Q Consensus 461 ~~P~~~~r~~Il~----~~l~---------~~~~~l~~~~l~~La~~t~-------g~~gaDi~~l~~~A~ 511 (957)
..++.++...||. .+++ +..+.+++..++.+|+.+. +.-.+-|..++....
T Consensus 331 ~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 331 QALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 9999999999883 1221 2344567777777777642 333344555554443
No 225
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.5e-11 Score=148.07 Aligned_cols=186 Identities=20% Similarity=0.275 Sum_probs=138.6
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|++|.|.+.+++.|+..+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 4567899999999999999886432 234568999999999999999999987542
Q ss_pred ----------EEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 357 ----------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 357 ----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
++++++.+- ..-..++.+.+.+.. ....|+||||+|.+.. ...+.|+..
T Consensus 80 ~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naLLk~ 142 (576)
T PRK14965 80 VEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNALLKT 142 (576)
T ss_pred HHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHHHHH
Confidence 334443221 112345666655432 2246999999998842 345678888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+.. ..++++|++|+.++.|.+.+++ |+. .++|..++.++....+...+.+.+..+++..+..++..+.| +.++
T Consensus 143 LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~ 216 (576)
T PRK14965 143 LEEP--PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRD 216 (576)
T ss_pred HHcC--CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8873 4578899999999999999998 653 48899999999999999888888888899999999998887 3455
Q ss_pred HHHHHHHH
Q 002169 503 LAALCNEA 510 (957)
Q Consensus 503 i~~l~~~A 510 (957)
+.+++..+
T Consensus 217 al~~Ldql 224 (576)
T PRK14965 217 SLSTLDQV 224 (576)
T ss_pred HHHHHHHH
Confidence 55555443
No 226
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.2e-11 Score=145.42 Aligned_cols=187 Identities=20% Similarity=0.279 Sum_probs=138.1
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------------
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN------------- 356 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~------------- 356 (957)
-.+.+|++|.|.+..++.|+..+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 34567899999999999998886432 234569999999999999999999987542
Q ss_pred -----------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 357 -----------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 357 -----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+. ....+.|+.
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-----------~~a~naLLK 141 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-----------NSAFNALLK 141 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-----------HHHHHHHHH
Confidence 22232211 011234455554332 2346799999999883 234567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.++. ....+++|++|+.++.+.+++++ |+. .++|..++.++..++++..+...+..+++..+..++....| ..+
T Consensus 142 ~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8876 34678888888888999999998 764 48899999999999999988888888899999999998877 556
Q ss_pred HHHHHHHHH
Q 002169 502 DLAALCNEA 510 (957)
Q Consensus 502 Di~~l~~~A 510 (957)
++..++..+
T Consensus 216 ~alslLdkl 224 (563)
T PRK06647 216 DAYTLFDQV 224 (563)
T ss_pred HHHHHHHHH
Confidence 666666544
No 227
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.35 E-value=3.7e-11 Score=129.16 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=106.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcC---CcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSG---VNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARK 405 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~---~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~ 405 (957)
+.+++|+||||||||+|++++++++. ..+.+++..+... ...++++.... ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~- 113 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE- 113 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH-
Confidence 45899999999999999999998653 3455555433211 11222222222 2599999999885321
Q ss_pred CCCchHHHHHHHHHHHHhhccccCCCeEEEEec-CCCCC---chhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcCC
Q 002169 406 DGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT-NRPDS---IEPALRRPGRLD--REIEIAVPSPAQRLEILHALLSGM 479 (957)
Q Consensus 406 ~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt-N~~~~---ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~~ 479 (957)
.....|+.+++.....++..+|+|+ ++|.. +.|.+++ |+. ..+.+..|+.+++.++++......
T Consensus 114 --------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~ 183 (235)
T PRK08084 114 --------LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLR 183 (235)
T ss_pred --------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHc
Confidence 2223455555554444444444444 55554 5689998 774 568999999999999999878777
Q ss_pred CCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 480 EHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 480 ~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
+..++++.++.|+.+..|- .+.+..++..
T Consensus 184 ~~~l~~~v~~~L~~~~~~d-~r~l~~~l~~ 212 (235)
T PRK08084 184 GFELPEDVGRFLLKRLDRE-MRTLFMTLDQ 212 (235)
T ss_pred CCCCCHHHHHHHHHhhcCC-HHHHHHHHHH
Confidence 8889999999999998764 3444444443
No 228
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.34 E-value=3.8e-11 Score=127.53 Aligned_cols=167 Identities=23% Similarity=0.364 Sum_probs=114.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHH-HHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~-~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
..+++||||+|+|||+|++++++++ +..++++++.++...+...... .+..+.+... ..++|+||+++.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG 111 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC
Confidence 4569999999999999999999764 5678899888876654322211 1222223332 346999999999853
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC---chhhhhCCCCcce--eeeecCCCHHHHHHHHHHHHc
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLDR--EIEIAVPSPAQRLEILHALLS 477 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~---ld~al~r~gRfd~--~I~i~~P~~~~r~~Il~~~l~ 477 (957)
..+....|..+++.+...++.+||.+...|.. +++.+++ ||.. .+.+..|+.+.|.+|++..+.
T Consensus 112 ---------~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 112 ---------KQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred ---------chHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 23456678888888766767666666566664 4577877 7654 689999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 478 GMEHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 478 ~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
..+..++++.++.|+.+..+ +.++|..++..
T Consensus 181 ~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~ 211 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARRFRR-DVRELEGALNR 211 (219)
T ss_dssp HTT--S-HHHHHHHHHHTTS-SHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 99999999999999998754 45566655554
No 229
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.34 E-value=1.8e-11 Score=133.70 Aligned_cols=133 Identities=21% Similarity=0.289 Sum_probs=94.5
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC------cccccccchHHHHH--------------------HHHH
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE------LFSKWVGESEKAVR--------------------SLFA 733 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~------l~~~~vg~~~~~ir--------------------~~f~ 733 (957)
..+++|+||||||||++|+++|..++.+++.+++.. +++.|.+....... ..+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 467999999999999999999999999999998754 33333322111110 0112
Q ss_pred HHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------------cCCcEEEEEecCCCC----
Q 002169 734 KARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------------QRVNVTVIAATNRPD---- 795 (957)
Q Consensus 734 ~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------------~~~~v~VI~aTN~~~---- 795 (957)
.|... ..+|+|||++.+ ...+.+.|+..|+... ...+..||+|+|...
T Consensus 101 ~A~~~-g~~lllDEi~r~-------------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 101 LAVRE-GFTLVYDEFTRS-------------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHc-CCEEEEcchhhC-------------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 22222 349999999965 3456667777776421 123678999999763
Q ss_pred -CCChhhhCCCCcceecccCCCCHHHHHHHHHHHH
Q 002169 796 -KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL 829 (957)
Q Consensus 796 -~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l 829 (957)
.+++++++ || ..++++.|+.++..+|++.++
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 46889999 98 588999999999999998875
No 230
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=3.2e-11 Score=145.42 Aligned_cols=192 Identities=19% Similarity=0.274 Sum_probs=137.8
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE---ec-----
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV---NG----- 362 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i---~~----- 362 (957)
++..|++|.|.+.+++.|+..+... +.+..+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 4567899999999999999886432 2345689999999999999999998875421100 00
Q ss_pred -----ccccccc--cchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCC
Q 002169 363 -----PEVVSQN--YGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDG 431 (957)
Q Consensus 363 -----~~l~~~~--~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~ 431 (957)
.+++... .......++.+.+.+.. ....|++|||+|.+.. ...+.|+..|+.. ...
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEP--P~~ 148 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEP--PKH 148 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcC--CCc
Confidence 0110000 00123446777766543 3357999999998842 3456788888873 457
Q ss_pred eEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 432 VLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 432 v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
+++|++|+.++.|.+.+++ |+. .++|..++.++..++++..+.+.+..+++..++.++..+.|- .+++..++..+
T Consensus 149 tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gs-lR~AlslLekl 223 (725)
T PRK07133 149 VIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGS-LRDALSIAEQV 223 (725)
T ss_pred eEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 8888899999999999998 774 589999999999999999888878887888899999888763 34555554443
No 231
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=3.7e-11 Score=140.56 Aligned_cols=184 Identities=20% Similarity=0.279 Sum_probs=132.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
.+.+|++|.|.+..++.|+..+... ..+..+|||||||+|||++|+++|+.+..
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 3467899999999999988886432 23456899999999999999999987743
Q ss_pred ----------cEEEEecccccccccchhHHHHHHHHHHH----hccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 356 ----------NLFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 356 ----------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
.++.+++.+.. | -..++.+.+.+ ......|++|||+|.+.. ...+.|+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~~----g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~LLk 143 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASHR----G--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNSLLK 143 (451)
T ss_pred HHHHhcCCCCceEEeeccccC----C--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHHHHH
Confidence 23333332211 1 12233333222 224567999999998842 23567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. .+.+++|++|+.+..+.+++++ |+. .++|..++.++....+...+.+.+..+++..++.++..+.| ..+
T Consensus 144 ~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr 217 (451)
T PRK06305 144 TLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLR 217 (451)
T ss_pred HhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88874 4577888888888899999998 663 48999999999999999888888888889999999998865 333
Q ss_pred HHHHHHH
Q 002169 502 DLAALCN 508 (957)
Q Consensus 502 Di~~l~~ 508 (957)
++..+++
T Consensus 218 ~a~~~Le 224 (451)
T PRK06305 218 DAESLYD 224 (451)
T ss_pred HHHHHHH
Confidence 4333333
No 232
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.33 E-value=2.6e-11 Score=148.24 Aligned_cols=182 Identities=23% Similarity=0.307 Sum_probs=127.0
Q ss_pred cccccccCCcHHHHH---HHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 292 EQDISKLGGLSKEYA---ILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~---~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
+.+++++.|.+..+. .|+.++.. ....+++|+|||||||||+|+++|+..+.+++.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~--- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA--- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh---
Confidence 456788999998875 45555321 123479999999999999999999999999988887531
Q ss_pred ccchhHHHHHHHHHHHh-----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC--CC
Q 002169 369 NYGESEQALHEVFDSAS-----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN--RP 441 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~-----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN--~~ 441 (957)
+ ...++.+++.+. .....+|||||+|.+.. .....|+..++ .+.+++|++|+ +.
T Consensus 89 --~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~-----------~qQdaLL~~lE----~g~IiLI~aTTenp~ 149 (725)
T PRK13341 89 --G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK-----------AQQDALLPWVE----NGTITLIGATTENPY 149 (725)
T ss_pred --h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH-----------HHHHHHHHHhc----CceEEEEEecCCChH
Confidence 1 112333333331 12457999999998842 12234555554 34577777664 33
Q ss_pred CCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHc-------CCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002169 442 DSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLS-------GMEHSLLDSEVEYLSMATHGFVGADLAALCNEAA 511 (957)
Q Consensus 442 ~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~-------~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~ 511 (957)
..+++++++ |. ..+.++.++.+++..+++..+. .....+++..++.|+....| ..+.+..+++.+.
T Consensus 150 ~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 150 FEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred hhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 568899988 53 3489999999999999998886 44567889999999998855 4555666665544
No 233
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=4e-11 Score=143.83 Aligned_cols=194 Identities=18% Similarity=0.192 Sum_probs=141.1
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEe-------
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVN------- 361 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~------- 361 (957)
+....+|++|.|.+..++.|...+... +.+..+||+||+|+|||++|+++|+.+.+.....+
T Consensus 17 KyRP~~f~dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 17 KYRPQTFDDLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 344568899999999999999986432 33567999999999999999999998865321111
Q ss_pred ------cc--------ccccccc--chhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 362 ------GP--------EVVSQNY--GESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 362 ------~~--------~l~~~~~--ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
|. +++.-.. .-.-..++++++.+.. ....|+||||+|.+.. ...+.|+.
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naLLK 154 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNALLK 154 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHHHH
Confidence 10 1110000 0113356777766542 2357999999998842 34567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. ...+++|++|+.++.+.+.+++ |+ ..++|..++.++...+++..+.+.+..+++..++.++..+.| ..+
T Consensus 155 tLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr 228 (598)
T PRK09111 155 TLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVR 228 (598)
T ss_pred HHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88774 4567888888888889999988 66 458999999999999999999888888899999999998876 456
Q ss_pred HHHHHHHHH
Q 002169 502 DLAALCNEA 510 (957)
Q Consensus 502 Di~~l~~~A 510 (957)
++.+++..+
T Consensus 229 ~al~~Ldkl 237 (598)
T PRK09111 229 DGLSLLDQA 237 (598)
T ss_pred HHHHHHHHH
Confidence 666666554
No 234
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=4.4e-11 Score=140.75 Aligned_cols=187 Identities=22% Similarity=0.302 Sum_probs=134.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
.+..|+++.|.+..++.|+..+... ..+..+|||||+|+||||+|+++|..+.+.
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 3457889999999999998886332 224457899999999999999999987531
Q ss_pred ----------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 357 ----------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 357 ----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
++.+++.+ ...-..++.+.+.+. .....|++|||+|.+.. ...+.|+..
T Consensus 80 ~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~ 142 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKT 142 (486)
T ss_pred HHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHH
Confidence 12222211 011223455554443 23457999999998842 234667888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
++.. ...+++|++|+.++.+.+++++ |+. .+.|..++.++...++..++...+..+++..++.++..+.| ..++
T Consensus 143 LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~ 216 (486)
T PRK14953 143 LEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRD 216 (486)
T ss_pred HhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 8763 4467788888888889999888 664 58999999999999999999888888888999999988775 3455
Q ss_pred HHHHHHHHH
Q 002169 503 LAALCNEAA 511 (957)
Q Consensus 503 i~~l~~~A~ 511 (957)
+.++++.+.
T Consensus 217 al~~Ldkl~ 225 (486)
T PRK14953 217 AASLLDQAS 225 (486)
T ss_pred HHHHHHHHH
Confidence 555555543
No 235
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.32 E-value=3.3e-12 Score=144.11 Aligned_cols=194 Identities=25% Similarity=0.365 Sum_probs=136.6
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCC---
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPE--- 715 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~--- 715 (957)
.....+|+|++.+..++.+.++.. ......|||.|++||||..+||+|...+ +.|||.+||+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 456778999999999999888653 3456779999999999999999998876 57999999964
Q ss_pred ------cccccccchHHHH---HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc------
Q 002169 716 ------LFSKWVGESEKAV---RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------ 780 (957)
Q Consensus 716 ------l~~~~vg~~~~~i---r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~------ 780 (957)
+++...|.+..++ +.-|+.|.++ .||+|||..| ...++..||..|+.-+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGel-------------PL~lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGEL-------------PLALQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCC---eEechhhccC-------------CHHHHHHHHHHHhhcceeecCC
Confidence 4555455544444 5678888887 9999999855 4566677887776431
Q ss_pred ---cCCcEEEEEecCCCCCCChhhhCCCCcceecc-------cCCCCHHHHH--------HHHHHHHhcCCCCC-cccHH
Q 002169 781 ---QRVNVTVIAATNRPDKIDPALLRPGRFDRLLY-------VGPPNETDRE--------EIFRIHLRKIPCSS-DVNIR 841 (957)
Q Consensus 781 ---~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~-------~~~P~~~er~--------~Il~~~l~~~~~~~-~~~l~ 841 (957)
...+|.||+|||+.-. ...+.|+|..-+| +..|...+|. .+++.+.++++... ...-+
T Consensus 352 ~r~ikVDVRiIAATNRDL~---~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~ 428 (550)
T COG3604 352 DRTIKVDVRVIAATNRDLE---EMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAE 428 (550)
T ss_pred CceeEEEEEEEeccchhHH---HHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHH
Confidence 1347999999997643 4455688876444 3456665553 34455555566532 22223
Q ss_pred H---HHHHc-cCCcHHHHHHHHHHHHHHH
Q 002169 842 E---LACLS-EGCTGADISLICREAAISA 866 (957)
Q Consensus 842 ~---la~~t-~g~sg~dl~~l~~eA~~~a 866 (957)
. |.... .| +.|++++++++|+..|
T Consensus 429 Al~~L~~y~wPG-NVRELen~veRavlla 456 (550)
T COG3604 429 ALELLSSYEWPG-NVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHcCCCCC-cHHHHHHHHHHHHHHh
Confidence 3 32222 23 5799999999999988
No 236
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.32 E-value=5.7e-11 Score=126.97 Aligned_cols=183 Identities=20% Similarity=0.232 Sum_probs=122.7
Q ss_pred ccccccC--CcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccc
Q 002169 293 QDISKLG--GLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVS 367 (957)
Q Consensus 293 ~~~~~i~--Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~ 367 (957)
.++++.. +....+..++++.. +.....+++|+||+|||||+||++++++. +..++.+++.++..
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 3455532 34555555555532 23456789999999999999999999875 66778888766532
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC---Cc
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD---SI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~---~l 444 (957)
. +. ......+|+|||+|.+... ....|+..++.....+..++|++++.+. .+
T Consensus 84 ~------------~~--~~~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l 138 (227)
T PRK08903 84 A------------FD--FDPEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLALPL 138 (227)
T ss_pred H------------Hh--hcccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCC
Confidence 1 11 1223569999999987321 1234666666554444544555554322 34
Q ss_pred hhhhhCCCCc--ceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 445 EPALRRPGRL--DREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 445 d~al~r~gRf--d~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
.+.+++ || ...++++.|+.+++..+++......+..+++..++.|+....| +.+++..+++.-...+
T Consensus 139 ~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 139 REDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYS 207 (227)
T ss_pred CHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 466666 65 4578999999999999999888888888899999999995444 5677777776643333
No 237
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=2e-11 Score=142.27 Aligned_cols=193 Identities=14% Similarity=0.220 Sum_probs=126.7
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcC
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRG 756 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~ 756 (957)
..+++||||+|+|||+|++++++++ +..++.++..++...+.......-...|.... ..+.+|+|||++.+.+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-
Confidence 4569999999999999999999876 56777777765544322211111112233322 345699999999874321
Q ss_pred CCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC-CC---CCChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHh
Q 002169 757 KESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR-PD---KIDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLR 830 (957)
Q Consensus 757 ~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~-~~---~id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~ 830 (957)
.....++..++.+...+. .+|++|+. |. .+++.|.+ ||. ..+.+.+|+.++|..|++..+.
T Consensus 219 ----------~~qeelf~l~N~l~~~~k-~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 219 ----------ATQEEFFHTFNSLHTEGK-LIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred ----------hhHHHHHHHHHHHHHCCC-cEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 112234444443332333 45555554 43 46789998 885 6888999999999999999998
Q ss_pred cCCCCCc-ccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 831 KIPCSSD-VNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 831 ~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
..++.-+ ..++.++....+ +.+++..+++..+.......+....|+.+..+++++..
T Consensus 286 ~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 286 ALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDV 343 (445)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 7765433 335557777765 78888888887764333333345678999999888865
No 238
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=6.1e-11 Score=136.02 Aligned_cols=185 Identities=18% Similarity=0.248 Sum_probs=132.7
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE------------E
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL------------F 358 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~------------i 358 (957)
.+.+|+++.|.+..++.++..+... ..+.++|||||||+|||++|+++|+.+.... +
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 3457889999999999888886432 2356899999999999999999999875421 2
Q ss_pred EEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEE
Q 002169 359 TVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLV 434 (957)
Q Consensus 359 ~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~v 434 (957)
.+++.. ......++.+++.+.. ..+.|++|||+|.+.. ...+.|+..++.. ....++
T Consensus 81 ~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~--~~~~~~ 141 (367)
T PRK14970 81 ELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEP--PAHAIF 141 (367)
T ss_pred Eecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCC--CCceEE
Confidence 222111 1123456677766542 2357999999987742 2345677777652 345677
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
|++++....+.+++++ |+. .+++..|+.++...++...+.+.+..+++..++.++..+.| ..+.+...++.
T Consensus 142 Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lek 212 (367)
T PRK14970 142 ILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDR 212 (367)
T ss_pred EEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 7778888888899988 553 48999999999999999988888888899999999998765 44444444443
No 239
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.31 E-value=2.2e-11 Score=136.38 Aligned_cols=214 Identities=23% Similarity=0.319 Sum_probs=132.3
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-------CC--cEEEEe
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-------GL--NFLAVK 712 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-------~~--~~i~v~ 712 (957)
...|++|+|++++++.+.-+... ....|+||+||||||||++||++|+.+ +. .+..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45789999999999987654321 112579999999999999999999987 22 222111
Q ss_pred CC-Cc--------cc---------------ccccc--hHHH--------HHHHHHHHHhCCCeEEEEeCCchhhhhcCCC
Q 002169 713 GP-EL--------FS---------------KWVGE--SEKA--------VRSLFAKARANAPSIIFFDEIDGLAAIRGKE 758 (957)
Q Consensus 713 ~~-~l--------~~---------------~~vg~--~~~~--------ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~ 758 (957)
+. ++ .. ..+|. .++. ....+.+|..+ +||+||++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~G---iL~lDEInrl------- 140 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRG---YLYIDEVNLL------- 140 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCC---eEEecChHhC-------
Confidence 10 00 00 01110 0000 01222233333 9999999965
Q ss_pred CCCCcchHHHHHHHHHHHhccc-----------cCCcEEEEEecCCCC-CCChhhhCCCCcceecccCCCCH-HHHHHHH
Q 002169 759 SDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD-KIDPALLRPGRFDRLLYVGPPNE-TDREEIF 825 (957)
Q Consensus 759 ~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~VI~aTN~~~-~id~aLlr~gRfd~~i~~~~P~~-~er~~Il 825 (957)
...+++.|+..|+... ....+++|+++|..+ .+.++++. ||...+.++.|.. ++|.+|+
T Consensus 141 ------~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il 212 (334)
T PRK13407 141 ------EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVI 212 (334)
T ss_pred ------CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHH
Confidence 4567778888886432 124678888888655 58999999 9999999988877 7899999
Q ss_pred HHHHhcCC----C------C--------------------CcccHH---HHHHHcc--CCcHHHHHHHHHHHHHHHHHHh
Q 002169 826 RIHLRKIP----C------S--------------------SDVNIR---ELACLSE--GCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 826 ~~~l~~~~----~------~--------------------~~~~l~---~la~~t~--g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
+.....-. + . .+.... +++..+. | .-+++. +++.|...|..+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s-~Ra~i~-l~~aA~a~A~l~G 290 (334)
T PRK13407 213 RRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDG-LRGELT-LLRAARALAAFEG 290 (334)
T ss_pred HHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCC-chHHHH-HHHHHHHHHHHcC
Confidence 87532100 0 0 000111 1222222 2 234444 7777777777665
Q ss_pred cCCCCCCHHHHHHHHHhhCC
Q 002169 871 LDASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 871 ~~~~~It~~d~~~al~~~~p 890 (957)
...|+.+|++.+..-+..
T Consensus 291 --r~~V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 291 --AEAVGRSHLRSVATMALS 308 (334)
T ss_pred --CCeeCHHHHHHHHHHhhh
Confidence 678999999877654443
No 240
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.31 E-value=5.9e-11 Score=125.16 Aligned_cols=194 Identities=22% Similarity=0.312 Sum_probs=138.3
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCC
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGP 714 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~ 714 (957)
.....+.+++++|.+..|+.|.+.....+ .-.+..++||+|+.|||||+++|++..+. |..+|.|...
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl---------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFL---------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHH---------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 34567899999999999999987765432 23477889999999999999999999876 6778888766
Q ss_pred CcccccccchHHHHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc--ccCCcEEEEEec
Q 002169 715 ELFSKWVGESEKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL--HQRVNVTVIAAT 791 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~--~~~~~v~VI~aT 791 (957)
++. .+..+++..+. ..+-|||+|++. + ...+.-...|-..|+|- ....+|+|.+|+
T Consensus 90 ~L~---------~l~~l~~~l~~~~~kFIlf~DDLs-F-----------e~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 90 DLG---------DLPELLDLLRDRPYKFILFCDDLS-F-----------EEGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred Hhc---------cHHHHHHHHhcCCCCEEEEecCCC-C-----------CCCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 653 34455555553 235699999864 1 12233345677777765 235589999999
Q ss_pred CCCCCCChhhhC---------------------CCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHH----HHHH
Q 002169 792 NRPDKIDPALLR---------------------PGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIR----ELAC 845 (957)
Q Consensus 792 N~~~~id~aLlr---------------------~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~----~la~ 845 (957)
|+.+.+.+.+.. ..||.-.|.|.+|+.++-.+|++.++.+.++.-+ ..+. ..|.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~ 228 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWAL 228 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 987665332111 1299999999999999999999999998887654 2222 2344
Q ss_pred HccCCcHHHHHHHHHH
Q 002169 846 LSEGCTGADISLICRE 861 (957)
Q Consensus 846 ~t~g~sg~dl~~l~~e 861 (957)
.-.|.|||-....++.
T Consensus 229 ~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 229 RRGGRSGRTARQFIDD 244 (249)
T ss_pred HcCCCCHHHHHHHHHH
Confidence 4557788877776653
No 241
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.31 E-value=1.1e-11 Score=146.96 Aligned_cols=261 Identities=20% Similarity=0.270 Sum_probs=160.0
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK 719 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~ 719 (957)
..|++++|.....+.+.+.+... .....+|||+|++||||+++|++|...+ +.||+.++|..+-..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 56889999999988888877531 2345679999999999999999998765 579999999765322
Q ss_pred c-----cc----chH----HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc------
Q 002169 720 W-----VG----ESE----KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------ 780 (957)
Q Consensus 720 ~-----vg----~~~----~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~------ 780 (957)
. .| .+. .....+|+.|..+ .||||||+.| ...++..|+..|+...
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~L-------------p~~~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHRG---TLFLDEIGEM-------------PLPLQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCCc---eEEecChHhC-------------CHHHHHHHHHHHhcCcEEecCC
Confidence 1 11 111 1123567777665 9999999976 4556667887776421
Q ss_pred ---cCCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHH----HHHHHHHhcC----CCCCcc-cHH
Q 002169 781 ---QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDRE----EIFRIHLRKI----PCSSDV-NIR 841 (957)
Q Consensus 781 ---~~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~----~Il~~~l~~~----~~~~~~-~l~ 841 (957)
...++.+|++||..-. .+...|+|.. .+.+..|...+|. .+++.++.++ ...-.. .+.
T Consensus 342 ~~~~~~dvRiIaat~~~l~---~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~ 418 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALT---TAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQ 418 (526)
T ss_pred CceeeecceEEeccCCCHH---HHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 1235689999986632 2333445543 3445566666554 3444444432 221111 111
Q ss_pred H-------HHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC---C-C--chHHHHHHHHHHHHHhc
Q 002169 842 E-------LACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ---P-S--EIHSYKELSAKFQRLVH 908 (957)
Q Consensus 842 ~-------la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~---p-~--~~~~y~~~~~~~~~~v~ 908 (957)
. |.....--+.+++++++++++..+... +...|+.+++........ + . ........ +.+++.++
T Consensus 419 ~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~--~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~l~~~-~~~Er~~I 495 (526)
T TIGR02329 419 VLAGVADPLQRYPWPGNVRELRNLVERLALELSAM--PAGALTPDVLRALAPELAEASGKGKTSALSLRER-SRVEALAV 495 (526)
T ss_pred HhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccC--CCCccCHHHhhhhchhhcccccccccCccchHHH-HHHHHHHH
Confidence 1 333322225799999999988764211 134577777653332210 0 0 00012222 45677777
Q ss_pred Cchhhhhcccccccchhhh---hhhhhccCC
Q 002169 909 SNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
........++....++..| .+||.++|.
T Consensus 496 ~~aL~~~~Gn~~~aA~~LGIsRtTL~Rklk~ 526 (526)
T TIGR02329 496 RAALERFGGDRDAAAKALGISRTTLWRRLKA 526 (526)
T ss_pred HHHHHHcCCCHHHHHHHhCCCHHHHHHHHhC
Confidence 7777777777777777776 889999874
No 242
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=5.6e-11 Score=139.98 Aligned_cols=188 Identities=19% Similarity=0.238 Sum_probs=139.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
.+.+|+++.|.+.+++.|+..+... ..+..+|||||+|+|||++|+++|+.+..
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 3467899999999999999886322 23455799999999999999999988732
Q ss_pred ---------cEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHH
Q 002169 356 ---------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNL 422 (957)
Q Consensus 356 ---------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ 422 (957)
.++.+++.+- -.-..++.+.+.+.. ....|++|||+|.+. ....+.|+..
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-----------~~A~NALLK~ 140 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-----------KEAFNALLKT 140 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHHH
Confidence 1233332210 012345565554321 224699999998884 3445678888
Q ss_pred hhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 423 MDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 423 ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
|+.. ...+.+|++|+.+..+.+++++ |. ..++|..++.++..+.+...+...+..+++..++.++..+.| ..++
T Consensus 141 LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~ 214 (535)
T PRK08451 141 LEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRD 214 (535)
T ss_pred Hhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHH
Confidence 8875 4567788888888999999999 74 468999999999999999888888888889999999998876 6677
Q ss_pred HHHHHHHHHH
Q 002169 503 LAALCNEAAL 512 (957)
Q Consensus 503 i~~l~~~A~~ 512 (957)
+..++..+..
T Consensus 215 alnlLdqai~ 224 (535)
T PRK08451 215 TLTLLDQAII 224 (535)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 243
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=6.4e-11 Score=143.01 Aligned_cols=183 Identities=21% Similarity=0.294 Sum_probs=135.9
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc---------------
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--------------- 356 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--------------- 356 (957)
...|+++.|.+..++.|+.++... +....+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~ 80 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL 80 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH
Confidence 457889999999999998886432 124579999999999999999999988652
Q ss_pred -----------EEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 357 -----------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 357 -----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
++.++. .....-..++++++.+.. ....|+||||+|.|. ....+.|+.
T Consensus 81 C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-----------~~a~naLLK 143 (620)
T PRK14948 81 CRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-----------TAAFNALLK 143 (620)
T ss_pred HHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------HHHHHHHHH
Confidence 122221 112334567777776542 234699999999883 234567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+. ....+++|++|+.++.+.+.+++ |+ ..++|..++.++....+.+.+.+.+..+++..+..++..+.|-- +
T Consensus 144 ~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l-r 217 (620)
T PRK14948 144 TLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL-R 217 (620)
T ss_pred HHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-H
Confidence 8886 34568888888888889999988 66 34889999999988888888888777788888999999887743 4
Q ss_pred HHHHHHH
Q 002169 502 DLAALCN 508 (957)
Q Consensus 502 Di~~l~~ 508 (957)
++..+++
T Consensus 218 ~A~~lLe 224 (620)
T PRK14948 218 DAESLLD 224 (620)
T ss_pred HHHHHHH
Confidence 4444444
No 244
>PRK06620 hypothetical protein; Validated
Probab=99.30 E-value=5.9e-11 Score=125.54 Aligned_cols=164 Identities=13% Similarity=0.202 Sum_probs=110.8
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD 760 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~ 760 (957)
..++||||||||||+|++++++..+..++. .... ....+ ....+|+|||||.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 669999999999999999999988754432 1000 00111 123599999999541
Q ss_pred CCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC--CChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhcCCCC-
Q 002169 761 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK--IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS- 835 (957)
Q Consensus 761 ~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~--id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~~~~~- 835 (957)
.. .+...++.+.+.+..++|+++..|.. + ++|++ |+. .++.+.+|+.+++..+++..+...++.
T Consensus 99 -----~~---~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l 167 (214)
T PRK06620 99 -----EP---ALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTI 167 (214)
T ss_pred -----HH---HHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 11 23333333334556677777766654 5 78888 874 268899999999999999888765543
Q ss_pred CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 836 SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 836 ~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
.+..++.++....| +.+.+.++++.....+... ...||...+++++
T Consensus 168 ~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~---~~~it~~~~~~~l 213 (214)
T PRK06620 168 SRQIIDFLLVNLPR-EYSKIIEILENINYFALIS---KRKITISLVKEVL 213 (214)
T ss_pred CHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHc---CCCCCHHHHHHHh
Confidence 34457778888886 7888888888644333322 3568888887765
No 245
>PRK08727 hypothetical protein; Validated
Probab=99.30 E-value=1.2e-10 Score=125.15 Aligned_cols=147 Identities=22% Similarity=0.332 Sum_probs=103.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARK 405 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~ 405 (957)
...++|+||+|||||+|+++++..+ +....+++..++ ...+...++... ...+|+|||++.+.....
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~l~--~~dlLiIDDi~~l~~~~~ 110 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA--------AGRLRDALEALE--GRSLVALDGLESIAGQRE 110 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh--------hhhHHHHHHHHh--cCCEEEEeCcccccCChH
Confidence 4569999999999999999998664 555566654332 223334454443 346999999998854321
Q ss_pred CCCchHHHHHHHHHHHHhhccccCCCeEEEEecC-CCCCc---hhhhhCCCCc--ceeeeecCCCHHHHHHHHHHHHcCC
Q 002169 406 DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN-RPDSI---EPALRRPGRL--DREIEIAVPSPAQRLEILHALLSGM 479 (957)
Q Consensus 406 ~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN-~~~~l---d~al~r~gRf--d~~I~i~~P~~~~r~~Il~~~l~~~ 479 (957)
....++.+++..... +..+|+|+| .|..+ ++++++ || ...+.++.|+.+++.+|++.++...
T Consensus 111 ---------~~~~lf~l~n~~~~~-~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 111 ---------DEVALFDFHNRARAA-GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred ---------HHHHHHHHHHHHHHc-CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 123455566555333 334555554 56654 688888 75 4468999999999999999988777
Q ss_pred CCCCChHHHHHHHHHcCC
Q 002169 480 EHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 480 ~~~l~~~~l~~La~~t~g 497 (957)
+..++++.++.|+.+..|
T Consensus 179 ~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 179 GLALDEAAIDWLLTHGER 196 (233)
T ss_pred CCCCCHHHHHHHHHhCCC
Confidence 888899999999999775
No 246
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=3.4e-11 Score=140.41 Aligned_cols=167 Identities=16% Similarity=0.241 Sum_probs=113.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARK 405 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~ 405 (957)
..+++||||+|+|||+|++++++++ +..++++++.++...........-...|.... ..+++|+|||++.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-
Confidence 4679999999999999999999876 67788888876655432222111112233322 346799999999885432
Q ss_pred CCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC---CchhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcCCC
Q 002169 406 DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD---SIEPALRRPGRLD--REIEIAVPSPAQRLEILHALLSGME 480 (957)
Q Consensus 406 ~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~---~ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~~~ 480 (957)
.....|+..++.+...+..+|+.+...|. .+++.+++ ||. ..+.+..|+.++|..|++..+...+
T Consensus 219 --------~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 219 --------ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred --------hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 12234555555443334444444444444 46688888 885 5788999999999999999999888
Q ss_pred CCCChHHHHHHHHHcCCCcHHHHHHHHH
Q 002169 481 HSLLDSEVEYLSMATHGFVGADLAALCN 508 (957)
Q Consensus 481 ~~l~~~~l~~La~~t~g~~gaDi~~l~~ 508 (957)
..++++.++.++....+- .+.+...+.
T Consensus 289 ~~l~~evl~~la~~~~~d-ir~L~g~l~ 315 (445)
T PRK12422 289 IRIEETALDFLIEALSSN-VKSLLHALT 315 (445)
T ss_pred CCCCHHHHHHHHHhcCCC-HHHHHHHHH
Confidence 889999999999987653 334444333
No 247
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=7.2e-11 Score=136.52 Aligned_cols=185 Identities=14% Similarity=0.197 Sum_probs=130.7
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
.+..|++|.|.+.+++.|+..+... +.+..+||+|||||||||+|+++|+.+.+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 4567889999999999888876422 235569999999999999999999988652
Q ss_pred ------------------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHH
Q 002169 357 ------------------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQR 414 (957)
Q Consensus 357 ------------------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~ 414 (957)
++.+++.+. ..-..++.+.+.+. .....|+||||+|.+.. .
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~-----------~ 142 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI-----------A 142 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-----------H
Confidence 112221110 11234555555442 12346999999998842 2
Q ss_pred HHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHH
Q 002169 415 MVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA 494 (957)
Q Consensus 415 i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~ 494 (957)
..+.|+..++.. ...+++|++|+.+..+.+++++ |.. .++|..++.++..+.++..+...+..+++..++.++..
T Consensus 143 ~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~ 217 (397)
T PRK14955 143 AFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRK 217 (397)
T ss_pred HHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 334577777753 3467777788778888888887 653 48899999999999999888887888899999999998
Q ss_pred cCCCcHHHHHHHHHH
Q 002169 495 THGFVGADLAALCNE 509 (957)
Q Consensus 495 t~g~~gaDi~~l~~~ 509 (957)
+.| ..+.+...++.
T Consensus 218 s~g-~lr~a~~~L~k 231 (397)
T PRK14955 218 AQG-SMRDAQSILDQ 231 (397)
T ss_pred cCC-CHHHHHHHHHH
Confidence 876 33444444443
No 248
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.28 E-value=1.4e-11 Score=145.91 Aligned_cols=259 Identities=20% Similarity=0.264 Sum_probs=153.4
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHH-----------hCCcEEEE
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE-----------AGLNFLAV 711 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~-----------~~~~~i~v 711 (957)
..|++++|.+...+.+++.+... ......|||+|++||||+++|++|... .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 45788999999988888877531 234567999999999999999999877 35799999
Q ss_pred eCCCccccc-----ccc----hH----HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhc
Q 002169 712 KGPELFSKW-----VGE----SE----KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDG 778 (957)
Q Consensus 712 ~~~~l~~~~-----vg~----~~----~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~ 778 (957)
+|..+-... .|. +. ..-..+|+.|.++ .||||||+.| ...++..|+..|+.
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~L-------------p~~~Q~kLl~~L~e 348 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEM-------------PLPLQTRLLRVLEE 348 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhC-------------CHHHHHHHHhhhhc
Confidence 998763321 111 11 1123467777666 9999999976 45566678887764
Q ss_pred cc---------cCCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHH----HHHHHHHhc----CCC
Q 002169 779 LH---------QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDRE----EIFRIHLRK----IPC 834 (957)
Q Consensus 779 ~~---------~~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~----~Il~~~l~~----~~~ 834 (957)
.. ...++.+|++||..-. .+...|+|.. .+.+..|...+|. .+++.++++ ...
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~L~---~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCDLE---EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCCHH---HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 21 1236789999986532 3444566654 3445667776654 344444443 332
Q ss_pred CCcccH--------HHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchHHHHHHHHHHHHH
Q 002169 835 SSDVNI--------RELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQRL 906 (957)
Q Consensus 835 ~~~~~l--------~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~~~~~y~~~~~~~~~~ 906 (957)
....+. ..|.....--+.+++++++++++..+.... ...|+.+++............. .. ...+++.
T Consensus 426 ~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~--~~~i~~~~l~~~~~~~~~~~~~-~~--~~~~Er~ 500 (538)
T PRK15424 426 PFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEP--TPDLTPQFLQLLLPELARESAK-TP--APRLLAA 500 (538)
T ss_pred CCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCC--cCccCHHHhhhhcccccccccc-cc--hhHHHHH
Confidence 211111 122222222267999999999887542111 2346666553211111100000 00 0113444
Q ss_pred hcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 907 VHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 907 v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
.+........++....++..| .+||.++|.
T Consensus 501 ~I~~~L~~~~Gn~~~aA~~LGIsRtTL~RkLk~ 533 (538)
T PRK15424 501 TLQQALERFNGDKTAAANYLGISRTTLWRRLKA 533 (538)
T ss_pred HHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 444455555555555555665 789999875
No 249
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.27 E-value=2.2e-10 Score=124.21 Aligned_cols=118 Identities=27% Similarity=0.278 Sum_probs=87.7
Q ss_pred CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC------------CCCchhhhhCCCCcce
Q 002169 389 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR------------PDSIEPALRRPGRLDR 456 (957)
Q Consensus 389 p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~------------~~~ld~al~r~gRfd~ 456 (957)
|.||||||+|.| +-...+-|...|+. .--.++|++||+ |+-|+..|.. |+ -
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEs---e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-l 354 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALES---ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-L 354 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhc---ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-e
Confidence 678888887766 22333444444443 223488889997 5567777765 54 2
Q ss_pred eeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccc
Q 002169 457 EIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQT 523 (957)
Q Consensus 457 ~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~ 523 (957)
.|...+++.++..+|++..+....+.+++..++.|++...--+-+.-.+|+.-|...|.+|......
T Consensus 355 II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~ 421 (450)
T COG1224 355 IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVE 421 (450)
T ss_pred EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeee
Confidence 3677889999999999999999999999999999999887777778788888888888887655443
No 250
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.27 E-value=8e-11 Score=128.64 Aligned_cols=133 Identities=24% Similarity=0.277 Sum_probs=94.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecc------cccccccchhHHHH-H--------------------HH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP------EVVSQNYGESEQAL-H--------------------EV 380 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~------~l~~~~~ge~e~~i-~--------------------~v 380 (957)
.+.+++|+||||||||++|+++|..+|.+++.++|. ++++.+.+.....+ . .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 467899999999999999999999999999999875 34443332211111 1 11
Q ss_pred HHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--------------cCCCeEEEEecCCCC----
Q 002169 381 FDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--------------RTDGVLVIAATNRPD---- 442 (957)
Q Consensus 381 f~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--------------~~~~v~vI~ttN~~~---- 442 (957)
+..+. .+.+|+|||++.+. ..+.+.|+..|+.-. ...++.||+|+|+..
T Consensus 100 ~~A~~--~g~~lllDEi~r~~-----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 100 TLAVR--EGFTLVYDEFTRSK-----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHHH--cCCEEEEcchhhCC-----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 22121 24699999998863 235566777775421 224678999999863
Q ss_pred -CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHH
Q 002169 443 -SIEPALRRPGRLDREIEIAVPSPAQRLEILHALL 476 (957)
Q Consensus 443 -~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l 476 (957)
.+++++.+ || ..+.++.|+.++..+|++.+.
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56889998 88 458999999999999998764
No 251
>PRK08727 hypothetical protein; Validated
Probab=99.27 E-value=2.3e-10 Score=122.84 Aligned_cols=179 Identities=17% Similarity=0.219 Sum_probs=115.6
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGK 757 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~ 757 (957)
..++|+||+|||||.++++++.++ +...+.+...++ ...+...++... ...+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA--------AGRLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh--------hhhHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999997764 444455554332 223344555443 33599999999774321
Q ss_pred CCCCCcchHHHHHHHHHHHhccccCCcEEEEEecC-CCCC---CChhhhCCCCc--ceecccCCCCHHHHHHHHHHHHhc
Q 002169 758 ESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN-RPDK---IDPALLRPGRF--DRLLYVGPPNETDREEIFRIHLRK 831 (957)
Q Consensus 758 ~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN-~~~~---id~aLlr~gRf--d~~i~~~~P~~~er~~Il~~~l~~ 831 (957)
.. ...++..++..... +..+|+++| .|.. ++++|.+ || ..++.+++|+.+++.+|++.+...
T Consensus 110 ------~~---~~~lf~l~n~~~~~-~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 ------ED---EVALFDFHNRARAA-GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred ------HH---HHHHHHHHHHHHHc-CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 11 12333444433223 344666665 4544 4799998 86 457889999999999999987765
Q ss_pred CCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 002169 832 IPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 887 (957)
Q Consensus 832 ~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~ 887 (957)
.++. ++..+..|++.+.| +.+.+.++++.....+... ...||...+++.+..
T Consensus 178 ~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~---~~~it~~~~~~~l~~ 230 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA---KRRVTVPFLRRVLEE 230 (233)
T ss_pred cCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHhh
Confidence 4443 33456778888876 5556655576554434433 346898888877754
No 252
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.2e-10 Score=140.71 Aligned_cols=185 Identities=21% Similarity=0.274 Sum_probs=133.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------- 356 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------- 356 (957)
...+|++|.|.+..++.|+..+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 3567899999999999998876432 224568999999999999999999887532
Q ss_pred -----------EEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 357 -----------LFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 357 -----------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
++.+++... ..-..++.+.+.+.. ....|+||||+|.+.. ...+.|+.
T Consensus 80 c~~i~~~~~~d~~~i~~~~~------~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naLLk 142 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASH------TSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNALLK 142 (585)
T ss_pred HHHHhcCCCCeEEEEecccc------CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHHHH
Confidence 122222110 112234555443322 2356999999998842 33566888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. ...+++|++++..+.+.+.+++ |+. .++|..++..+...+++..+...+..+++..++.++..+.| +.+
T Consensus 143 ~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr 216 (585)
T PRK14950 143 TLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMR 216 (585)
T ss_pred HHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88774 3567888888888888888887 654 48899999999999999988888888889999999988876 555
Q ss_pred HHHHHHHH
Q 002169 502 DLAALCNE 509 (957)
Q Consensus 502 Di~~l~~~ 509 (957)
++.+.++.
T Consensus 217 ~al~~Lek 224 (585)
T PRK14950 217 DAENLLQQ 224 (585)
T ss_pred HHHHHHHH
Confidence 55555543
No 253
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=6.3e-11 Score=140.33 Aligned_cols=167 Identities=14% Similarity=0.262 Sum_probs=119.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCC
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPAR 404 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~ 404 (957)
..++|||++|||||+|++++++++ +..++++++.++...+...........|.... ..+++|+||||+.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 459999999999999999999876 56788999988876654433322222333222 236899999999886432
Q ss_pred cCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC-CC---CchhhhhCCCCcce--eeeecCCCHHHHHHHHHHHHcC
Q 002169 405 KDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR-PD---SIEPALRRPGRLDR--EIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 405 ~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~-~~---~ld~al~r~gRfd~--~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
.....|+.+++.+...++. +|+++|. +. .+++.|++ ||.. .+.+..|+.+.|.+||+.++..
T Consensus 394 ---------~tqeeLF~l~N~l~e~gk~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 394 ---------STQEEFFHTFNTLHNANKQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred ---------HHHHHHHHHHHHHHhcCCC-EEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 1224566666666544444 4446654 33 56788988 7754 5699999999999999999999
Q ss_pred CCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 479 MEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 479 ~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
..+.++++.++.|+.+..+ +.+.|..++..-
T Consensus 462 r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL 492 (617)
T PRK14086 462 EQLNAPPEVLEFIASRISR-NIRELEGALIRV 492 (617)
T ss_pred cCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 9999999999999998765 345555555543
No 254
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=2.1e-10 Score=129.74 Aligned_cols=191 Identities=15% Similarity=0.150 Sum_probs=130.6
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-------cEEEE-e
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------NFLAV-K 712 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~-------~~i~v-~ 712 (957)
.+..+++++|++++++.+..++.. -+.+..+||+||+|+|||++|+.+|+.+.. +.... .
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 455789999999999999988863 244567999999999999999999998744 11000 0
Q ss_pred --------------CCCcc---ccc--------ccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCc
Q 002169 713 --------------GPELF---SKW--------VGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVS 763 (957)
Q Consensus 713 --------------~~~l~---~~~--------vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~ 763 (957)
-+++. ..+ ..-+...+|.+.+... .+...|++|||+|.+
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l------------ 153 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM------------ 153 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc------------
Confidence 01111 000 0011234455444332 345679999999977
Q ss_pred chHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHH
Q 002169 764 VSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIREL 843 (957)
Q Consensus 764 ~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~l 843 (957)
.....+.||..|+.. ..+.++|++|+.++.+.|.+++ |+ ..+.+++|+.++..++++......+ .++.....+
T Consensus 154 -~~~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i 226 (351)
T PRK09112 154 -NRNAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEAL 226 (351)
T ss_pred -CHHHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHH
Confidence 344567899999863 4467777888999999999988 88 5999999999999999987443322 123335677
Q ss_pred HHHccCCcHHHHHHHHHHHH
Q 002169 844 ACLSEGCTGADISLICREAA 863 (957)
Q Consensus 844 a~~t~g~sg~dl~~l~~eA~ 863 (957)
++.+.| +.+...++++...
T Consensus 227 ~~~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HHHcCC-CHHHHHHHHhcCc
Confidence 777887 6666666665443
No 255
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.7e-10 Score=138.63 Aligned_cols=174 Identities=13% Similarity=0.196 Sum_probs=127.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE-------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL------------- 357 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~------------- 357 (957)
+..+|++|.|.+.+++.|+..+... ..+..+||+||+||||||+|+++|+.+.+.-
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 4567899999999999988875322 2345699999999999999999999886621
Q ss_pred -------------------EEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHH
Q 002169 358 -------------------FTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQR 414 (957)
Q Consensus 358 -------------------i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~ 414 (957)
+.+++.+. ..-..++.+.+.+. .....|++|||+|.+.. .
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~-----------~ 142 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST-----------A 142 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH-----------H
Confidence 11111110 11234555554442 23356999999998842 2
Q ss_pred HHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHH
Q 002169 415 MVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA 494 (957)
Q Consensus 415 i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~ 494 (957)
..+.|+..|+.. ...+++|++|+.++.+.+.+++ |. ..++|..++.++....++..+...+..+++..++.++..
T Consensus 143 a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~ 217 (620)
T PRK14954 143 AFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARK 217 (620)
T ss_pred HHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345688888774 3457777788888899899888 54 348999999999999998888887888899999999998
Q ss_pred cCC
Q 002169 495 THG 497 (957)
Q Consensus 495 t~g 497 (957)
+.|
T Consensus 218 s~G 220 (620)
T PRK14954 218 AQG 220 (620)
T ss_pred hCC
Confidence 876
No 256
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.26 E-value=1.8e-10 Score=129.15 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=122.9
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-----~~~i~i~~~~l~ 366 (957)
+.+++++.|.+++++.++..+... ...+++|+||||||||++++++++++. ..++.+++++-.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 356788999999999998886321 123689999999999999999999873 234555544321
Q ss_pred ccccchhHHHHHHHHHH-Hh----c-cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 367 SQNYGESEQALHEVFDS-AS----Q-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~-a~----~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
+ ...++..+.. +. . ..+.+++|||+|.+.. .....|+..++... ....+|+++|.
T Consensus 81 ~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~~~~~L~~~le~~~--~~~~lIl~~~~ 141 (319)
T PRK00440 81 G------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------DAQQALRRTMEMYS--QNTRFILSCNY 141 (319)
T ss_pred c------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------HHHHHHHHHHhcCC--CCCeEEEEeCC
Confidence 1 1112222221 11 1 2356999999998842 12345677776643 34567778888
Q ss_pred CCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCC
Q 002169 441 PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF 498 (957)
Q Consensus 441 ~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~ 498 (957)
+..+.+++++ |+. .++++.++.++...+++.++.+.+..+++..++.++..+.|.
T Consensus 142 ~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd 196 (319)
T PRK00440 142 SSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGD 196 (319)
T ss_pred ccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 7878788887 664 489999999999999999998888888999999999987663
No 257
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.25 E-value=3e-10 Score=119.89 Aligned_cols=190 Identities=22% Similarity=0.330 Sum_probs=133.9
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ 368 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~ 368 (957)
...++++.|++.+++.|.+-.... +.-.|..++||+|+.|||||++++++..+. |..+++|...++..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~F--------l~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~- 93 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQF--------LQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD- 93 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHH--------HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc-
Confidence 456789999999999988775433 223578899999999999999999999866 67788887766532
Q ss_pred ccchhHHHHHHHHHHHhcc-CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--ccCCCeEEEEecCCCCCch
Q 002169 369 NYGESEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~~~~~v~vI~ttN~~~~ld 445 (957)
+..+++..... .+-|||+|++.- . . . ..--..|..+|++- ....++++.+|+|+-+.++
T Consensus 94 --------l~~l~~~l~~~~~kFIlf~DDLsF--e-~---~----d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 94 --------LPELLDLLRDRPYKFILFCDDLSF--E-E---G----DTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred --------HHHHHHHHhcCCCCEEEEecCCCC--C-C---C----cHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 33444444322 356999999641 1 1 1 11224567777764 3467899999999855444
Q ss_pred hhhhC---------------------CCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHH----HHHHcCCCcH
Q 002169 446 PALRR---------------------PGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEY----LSMATHGFVG 500 (957)
Q Consensus 446 ~al~r---------------------~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~----La~~t~g~~g 500 (957)
+.+.. ..||.-.|.|..|+.++-.+|++.++...++.++++.+.. .|....|.+|
T Consensus 156 E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSG 235 (249)
T PF05673_consen 156 ESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSG 235 (249)
T ss_pred hhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCH
Confidence 32111 1288889999999999999999999999888877655543 3444567777
Q ss_pred HHHHHHHH
Q 002169 501 ADLAALCN 508 (957)
Q Consensus 501 aDi~~l~~ 508 (957)
+--.+.++
T Consensus 236 RtA~QF~~ 243 (249)
T PF05673_consen 236 RTARQFID 243 (249)
T ss_pred HHHHHHHH
Confidence 76665554
No 258
>PRK05642 DNA replication initiation factor; Validated
Probab=99.25 E-value=1.3e-10 Score=124.76 Aligned_cols=159 Identities=21% Similarity=0.271 Sum_probs=112.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARK 405 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~ 405 (957)
..+++|+||+|||||+|++++++++ +..+++++..++.... ..+++.... ..+|+|||++.+..+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh-
Confidence 4679999999999999999998754 5677888877765421 223333322 2599999999875332
Q ss_pred CCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc---hhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcCCC
Q 002169 406 DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI---EPALRRPGRLD--REIEIAVPSPAQRLEILHALLSGME 480 (957)
Q Consensus 406 ~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l---d~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~~~ 480 (957)
.....|+.+++.+...+..++|+++..|..+ .|.+++ ||. ..+.+..|+.+++.++++......+
T Consensus 114 --------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 --------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 2234577777776555666666666555433 578888 763 4578899999999999997777777
Q ss_pred CCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 481 HSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 481 ~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
..++++.++.++.+..+- .+.+..+++.
T Consensus 184 ~~l~~ev~~~L~~~~~~d-~r~l~~~l~~ 211 (234)
T PRK05642 184 LHLTDEVGHFILTRGTRS-MSALFDLLER 211 (234)
T ss_pred CCCCHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence 888999999999987753 3444444443
No 259
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.7e-10 Score=128.33 Aligned_cols=218 Identities=21% Similarity=0.316 Sum_probs=147.0
Q ss_pred cCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-----EEEEeCCCccccc--
Q 002169 648 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN-----FLAVKGPELFSKW-- 720 (957)
Q Consensus 648 i~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~-----~i~v~~~~l~~~~-- 720 (957)
+.+.++..+++...+.-. +.-..|.++++|||||||||.+++.+++++... ++.|||..+-+.|
T Consensus 19 l~~Re~ei~~l~~~l~~~---------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPA---------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHH---------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 667777777777765432 123345569999999999999999999987433 8899987653321
Q ss_pred -------------ccch-HHHHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcE
Q 002169 721 -------------VGES-EKAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNV 785 (957)
Q Consensus 721 -------------vg~~-~~~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v 785 (957)
.|.+ .+....+++.... ...-|++|||+|.|....+ .++-.|+...+.. ...+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~~~--~~~v 157 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----------EVLYSLLRAPGEN--KVKV 157 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----------hHHHHHHhhcccc--ceeE
Confidence 1111 2222333333332 4566999999999975432 3444454444433 4578
Q ss_pred EEEEecCCCC---CCChhhhCCCCc-ceecccCCCCHHHHHHHHHHHHhcCC---CCCcccH---HHHHHHccCCcHHHH
Q 002169 786 TVIAATNRPD---KIDPALLRPGRF-DRLLYVGPPNETDREEIFRIHLRKIP---CSSDVNI---RELACLSEGCTGADI 855 (957)
Q Consensus 786 ~VI~aTN~~~---~id~aLlr~gRf-d~~i~~~~P~~~er~~Il~~~l~~~~---~~~~~~l---~~la~~t~g~sg~dl 855 (957)
.+|+.+|..+ .+|+.+.+ +| ...|.|++++.+|...|++...+.-- ...+.-+ ..++....| +.|-.
T Consensus 158 ~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~a 234 (366)
T COG1474 158 SIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKA 234 (366)
T ss_pred EEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHH
Confidence 8999999875 57888877 54 34589999999999999998886421 1122222 233344455 67888
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 856 SLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 856 ~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
..+|+.|+..|-++. ...++.+|+..|...+...
T Consensus 235 idilr~A~eiAe~~~--~~~v~~~~v~~a~~~~~~~ 268 (366)
T COG1474 235 IDILRRAGEIAEREG--SRKVSEDHVREAQEEIERD 268 (366)
T ss_pred HHHHHHHHHHHHhhC--CCCcCHHHHHHHHHHhhHH
Confidence 899999999998876 7789999999996555443
No 260
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.24 E-value=7.9e-11 Score=127.44 Aligned_cols=189 Identities=25% Similarity=0.403 Sum_probs=126.6
Q ss_pred ccccccccCCcHHHHHH---HHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc---EEEEeccc
Q 002169 291 VEQDISKLGGLSKEYAI---LKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---LFTVNGPE 364 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~---l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~---~i~i~~~~ 364 (957)
...++++.+|.+..+.+ |+.+|+. ..-..++|+||||||||+||+.|+.-...+ |+++++..
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ieq------------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIEQ------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHHc------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 44567888888876654 3333221 123368999999999999999999877665 66665432
Q ss_pred ccccccchhHHHHHHHHHHHhc-----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 365 VVSQNYGESEQALHEVFDSASQ-----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 365 l~~~~~ge~e~~i~~vf~~a~~-----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
.....+|.+|+.+.. ....||||||++.+....++ .|+-.+ ..+.+++|++|.
T Consensus 201 -------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD-----------~fLP~V----E~G~I~lIGATT 258 (554)
T KOG2028|consen 201 -------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD-----------TFLPHV----ENGDITLIGATT 258 (554)
T ss_pred -------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh-----------ccccee----ccCceEEEeccc
Confidence 234568888987763 34689999999988543322 244333 356789999873
Q ss_pred --CCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHc----------CCCC---CCChHHHHHHHHHcCCCcHHHHH
Q 002169 440 --RPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLS----------GMEH---SLLDSEVEYLSMATHGFVGADLA 504 (957)
Q Consensus 440 --~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~----------~~~~---~l~~~~l~~La~~t~g~~gaDi~ 504 (957)
+--.+..+|.+ |+ +++.+.....+....||..-.. .+++ .+.+..++.++..++|-..+.+.
T Consensus 259 ENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN 335 (554)
T KOG2028|consen 259 ENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALN 335 (554)
T ss_pred CCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHH
Confidence 44467788888 44 3377888888888888876332 1222 24567789999999987766666
Q ss_pred HHHHHHHHHHHH
Q 002169 505 ALCNEAALVCLR 516 (957)
Q Consensus 505 ~l~~~A~~~a~r 516 (957)
.|--.+.+.+.|
T Consensus 336 ~Lems~~m~~tr 347 (554)
T KOG2028|consen 336 ALEMSLSMFCTR 347 (554)
T ss_pred HHHHHHHHHHhh
Confidence 554434444444
No 261
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.24 E-value=2.3e-11 Score=145.04 Aligned_cols=263 Identities=23% Similarity=0.287 Sum_probs=162.0
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW 720 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~ 720 (957)
...+++|.....+.+.+.+... ...+..|||+|++||||+++|++|.... +.+|+.++|..+-...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 4678999999998888877542 2346679999999999999999998875 5799999998763321
Q ss_pred -----ccchH-------HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------
Q 002169 721 -----VGESE-------KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------- 780 (957)
Q Consensus 721 -----vg~~~-------~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-------- 780 (957)
.|... ......|+.|.++ .||||||+.+ ...++..|+..++...
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a~gG---tL~ldeI~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELADGG---TLFLDEIGEL-------------PLALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhcCCC---EEEecChhhC-------------CHHHHHHHHHHHhcCCEeeCCCCc
Confidence 11100 0112246666555 8999999976 3455667777776421
Q ss_pred -cCCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHH----HHHHHHH----hcCCCC-Cccc---H
Q 002169 781 -QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDRE----EIFRIHL----RKIPCS-SDVN---I 840 (957)
Q Consensus 781 -~~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~----~Il~~~l----~~~~~~-~~~~---l 840 (957)
...++.||++||..-. .+...|+|.. .+.+..|...+|. .+++.++ .+++.. ..+. +
T Consensus 318 ~~~~~~RiI~~t~~~l~---~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~ 394 (509)
T PRK05022 318 SLRVDVRVIAATNRDLR---EEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQ 394 (509)
T ss_pred ceecceEEEEecCCCHH---HHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 1237899999986532 3333444443 3445566666654 2333333 333211 1223 3
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHhh--------CC--CchHHHHHHHHHHHHHhcC
Q 002169 841 RELACLSEGCTGADISLICREAAISAIEENLD-ASRITMQHLKTAIRHV--------QP--SEIHSYKELSAKFQRLVHS 909 (957)
Q Consensus 841 ~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~-~~~It~~d~~~al~~~--------~p--~~~~~y~~~~~~~~~~v~~ 909 (957)
..|.....--+.++++++++.|+..+.....+ ...|+.+|+....... .+ .....+....+.+++.++.
T Consensus 395 ~~L~~y~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Er~~I~ 474 (509)
T PRK05022 395 AALLAYDWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQRQLIR 474 (509)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcCcccccccCccccccccccccccCHHHHHHHHHHHHHH
Confidence 34444433336899999999999877533211 1245666654321100 00 0011233444567888888
Q ss_pred chhhhhcccccccchhhh---hhhhhccCC
Q 002169 910 NAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 910 ~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
.......++..+.++..| .+||.++|.
T Consensus 475 ~aL~~~~gn~~~aA~~LGisr~tL~rklk~ 504 (509)
T PRK05022 475 QALAQHQGNWAAAARALELDRANLHRLAKR 504 (509)
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 888887888777777776 789999886
No 262
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.24 E-value=1.1e-10 Score=113.71 Aligned_cols=121 Identities=36% Similarity=0.585 Sum_probs=84.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHHH---HHHHHHHHhccCCeEEEEcCccccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQA---LHEVFDSASQSAPAVVFIDELDAIA 401 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~~---i~~vf~~a~~~~p~IL~IDEiD~l~ 401 (957)
.+.+++++||||||||++++.++..+ +.+++.+++.+............ ....+.......+.+|++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 56789999999999999999999998 88899998877655432221111 1222333445568899999998762
Q ss_pred cCCcCCCchHHHHHHHHHHHHhhcccc----CCCeEEEEecCCCC--CchhhhhCCCCcceeeeec
Q 002169 402 PARKDGGEELSQRMVATLLNLMDGVCR----TDGVLVIAATNRPD--SIEPALRRPGRLDREIEIA 461 (957)
Q Consensus 402 ~~~~~~~~~~~~~i~~~Ll~~ld~l~~----~~~v~vI~ttN~~~--~ld~al~r~gRfd~~I~i~ 461 (957)
......++..+..... ..++.+|+++|... .+++.+.+ ||+..+.++
T Consensus 98 -----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 -----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred -----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1223345555555432 36789999999877 67777777 887666664
No 263
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.24 E-value=1e-10 Score=113.90 Aligned_cols=121 Identities=41% Similarity=0.650 Sum_probs=84.9
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHHH---HHHHHHHHHhCCCeEEEEeCCchhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKA---VRSLFAKARANAPSIIFFDEIDGLA 752 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~~---ir~~f~~A~~~~p~ILfiDEid~l~ 752 (957)
...+++++||||||||++++.+++.+ +.+++.+++.+....+....... ....+..+....+.+|++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45679999999999999999999998 88899998877655433222111 1223344555678899999999762
Q ss_pred hhcCCCCCCCcchHHHHHHHHHHHhcccc----CCcEEEEEecCCCC--CCChhhhCCCCcceecccC
Q 002169 753 AIRGKESDGVSVSDRVMSQLLVELDGLHQ----RVNVTVIAATNRPD--KIDPALLRPGRFDRLLYVG 814 (957)
Q Consensus 753 ~~r~~~~~~~~~~~~v~~~LL~~ld~~~~----~~~v~VI~aTN~~~--~id~aLlr~gRfd~~i~~~ 814 (957)
......++..+..... ..++.+|++||... .+++.+.+ ||+..+.++
T Consensus 98 -------------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 -------------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred -------------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1222345555554432 35789999999887 67888887 998777765
No 264
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.24 E-value=5.1e-11 Score=138.69 Aligned_cols=195 Identities=18% Similarity=0.258 Sum_probs=148.6
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE--E------EEe
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL--F------TVN 361 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~--i------~i~ 361 (957)
.++..|+++.|.+.+.+.|++.+..-. -....||.||-||||||+||.+|+-+++.- . ...
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~r-----------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGR-----------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCc-----------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 345678999999999999999975552 234689999999999999999998886531 0 011
Q ss_pred ccccccc-cc---------chhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc
Q 002169 362 GPEVVSQ-NY---------GESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC 427 (957)
Q Consensus 362 ~~~l~~~-~~---------ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~ 427 (957)
|.++... ++ ...-..+|.+.+.+. .....|++|||+|.|. ....+.||..+++
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-----------~~afNALLKTLEE-- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-----------KQAFNALLKTLEE-- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-----------HHHHHHHhccccc--
Confidence 1222221 00 122346777777664 3346799999999883 4556778888877
Q ss_pred cCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHH
Q 002169 428 RTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALC 507 (957)
Q Consensus 428 ~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~ 507 (957)
...+|.+|++|..++.+++.+++ |.- .+.|..-+.++....+...+.+.++...+..+..+++..+| +.+|..+++
T Consensus 146 PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslL 221 (515)
T COG2812 146 PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLL 221 (515)
T ss_pred CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHH
Confidence 56789999999999999999998 653 37888999999999999999999999999999999998887 557877777
Q ss_pred HHHHH
Q 002169 508 NEAAL 512 (957)
Q Consensus 508 ~~A~~ 512 (957)
..|..
T Consensus 222 Dq~i~ 226 (515)
T COG2812 222 DQAIA 226 (515)
T ss_pred HHHHH
Confidence 77643
No 265
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.23 E-value=3e-10 Score=137.64 Aligned_cols=192 Identities=23% Similarity=0.350 Sum_probs=125.0
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~ 361 (957)
..+|+++.|.+..++.+...+.. ..+.+++|+|||||||||+|+++++.. +.+|+.++
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 45678899999988877655321 235679999999999999999998765 34689999
Q ss_pred cccccc-------cccchhH----HHHHHHHHH----------HhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHH
Q 002169 362 GPEVVS-------QNYGESE----QALHEVFDS----------ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLL 420 (957)
Q Consensus 362 ~~~l~~-------~~~ge~e----~~i~~vf~~----------a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll 420 (957)
|..+.. ...|... ...+..+.. .......+|||||++.+.+ .....|+
T Consensus 218 ~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-----------~~Q~~Ll 286 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-----------LLQNKLL 286 (615)
T ss_pred chhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH-----------HHHHHHH
Confidence 876521 0111110 011111111 0011245999999987732 3334555
Q ss_pred HHhhccc--------------------------cCCCeEEEEec-CCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHH
Q 002169 421 NLMDGVC--------------------------RTDGVLVIAAT-NRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILH 473 (957)
Q Consensus 421 ~~ld~l~--------------------------~~~~v~vI~tt-N~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~ 473 (957)
..|+.-. ....+++|++| +.++.+++++++ ||. .+.++.++.+++.+|++
T Consensus 287 ~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~ 363 (615)
T TIGR02903 287 KVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVL 363 (615)
T ss_pred HHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHH
Confidence 5554310 12235666554 567889999998 886 47899999999999999
Q ss_pred HHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 002169 474 ALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAA 511 (957)
Q Consensus 474 ~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~ 511 (957)
..+......+++..++.++..+. .++....++..+.
T Consensus 364 ~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~ 399 (615)
T TIGR02903 364 NAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVY 399 (615)
T ss_pred HHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHH
Confidence 99888777778888888888654 3444444444443
No 266
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.23 E-value=1.6e-10 Score=136.87 Aligned_cols=191 Identities=16% Similarity=0.253 Sum_probs=130.5
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhc
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 755 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r 755 (957)
..++|||++|||||.|+++|++++ +..++.++..++...+...........|.+-. ..+++|+||||+.+....
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 349999999999999999999876 46778888877766554332222222333322 246799999999875322
Q ss_pred CCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC----CCCChhhhCCCCcc--eecccCCCCHHHHHHHHHHHH
Q 002169 756 GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP----DKIDPALLRPGRFD--RLLYVGPPNETDREEIFRIHL 829 (957)
Q Consensus 756 ~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~----~~id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l 829 (957)
.....|+..++.+..... .||+++|.+ ..+++.|.+ ||. .++.+..|+.+.|..||+.++
T Consensus 394 -----------~tqeeLF~l~N~l~e~gk-~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 394 -----------STQEEFFHTFNTLHNANK-QIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred -----------HHHHHHHHHHHHHHhcCC-CEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 112334444444433323 355566654 357889998 874 566889999999999999999
Q ss_pred hcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 002169 830 RKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 830 ~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p 890 (957)
...++.- +.-+..|+....+ +.++|..++.+....+... ...|+.+..++.++.+.+
T Consensus 460 ~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~---~~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 460 VQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLN---RQPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhhc
Confidence 8776653 3346777777775 7899999988776555543 356888888888876643
No 267
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.23 E-value=6e-11 Score=131.15 Aligned_cols=138 Identities=19% Similarity=0.175 Sum_probs=97.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc--ccchhHH----------HHHHHHHHHhccCCeEEEE
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ--NYGESEQ----------ALHEVFDSASQSAPAVVFI 394 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~--~~ge~e~----------~i~~vf~~a~~~~p~IL~I 394 (957)
..+++|+|.||||||||++++.+|..++.+++.|++..-+.. ..|.... .....+-.|. ..+.+|++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEe
Confidence 346789999999999999999999999999999987654333 2232110 0111222332 34678999
Q ss_pred cCccccccCCcCCCchHHHHHHHHHHHHhhc------------cccCCCeEEEEecCCCC------------CchhhhhC
Q 002169 395 DELDAIAPARKDGGEELSQRMVATLLNLMDG------------VCRTDGVLVIAATNRPD------------SIEPALRR 450 (957)
Q Consensus 395 DEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~------------l~~~~~v~vI~ttN~~~------------~ld~al~r 450 (957)
||+|..-+ .+...|..+|+. +..+..+.||+|+|+.+ .++++++.
T Consensus 141 DEin~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD 209 (327)
T TIGR01650 141 DEYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD 209 (327)
T ss_pred chhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh
Confidence 99998733 233444444441 13445789999999865 35788888
Q ss_pred CCCcceeeeecCCCHHHHHHHHHHHHcC
Q 002169 451 PGRLDREIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 451 ~gRfd~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
||-..+.+++|+.++-.+|+......
T Consensus 210 --RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 210 --RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred --heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 99877899999999999999876544
No 268
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.23 E-value=3.8e-10 Score=132.03 Aligned_cols=192 Identities=12% Similarity=0.196 Sum_probs=130.9
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccccccchHH---HHHHHHHHHHhCCCeEEEEeCCchh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEK---AVRSLFAKARANAPSIIFFDEIDGL 751 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~~vg~~~~---~ir~~f~~A~~~~p~ILfiDEid~l 751 (957)
..+++|||++|||||.|++++++++ +..++.+++.++...+...... .+..+.+.. ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 4569999999999999999999864 4677788887776554433221 222222222 34569999999977
Q ss_pred hhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC-CC---CChhhhCCCCcc--eecccCCCCHHHHHHHH
Q 002169 752 AAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP-DK---IDPALLRPGRFD--RLLYVGPPNETDREEIF 825 (957)
Q Consensus 752 ~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~-~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il 825 (957)
... ......|...++.....+. .+|+++|.+ +. +++.|.+ ||. -++.+.+|+.++|.+|+
T Consensus 219 ~~k-----------~~~~e~lf~l~N~~~~~~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 219 SYK-----------EKTNEIFFTIFNNFIENDK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred cCC-----------HHHHHHHHHHHHHHHHcCC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHH
Confidence 421 2233345555554433433 455666543 33 5788888 874 46778999999999999
Q ss_pred HHHHhcCCC---CCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 826 RIHLRKIPC---SSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 826 ~~~l~~~~~---~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
+..++..++ -.+..+..++....| +.|.+..+|..+...+..... ...|+.+.++++++.+.
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~-~~~it~~~v~~~l~~~~ 349 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPE-EKIITIEIVSDLFRDIP 349 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccC-CCCCCHHHHHHHHhhcc
Confidence 999987553 234456778888887 899999999988766554321 25689999999888753
No 269
>PRK05642 DNA replication initiation factor; Validated
Probab=99.22 E-value=4.4e-10 Score=120.72 Aligned_cols=180 Identities=13% Similarity=0.193 Sum_probs=121.1
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcC
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRG 756 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~ 756 (957)
...++|+||+|||||.|++++++++ +...+.++..++... ...+++..... .+|+||+++.+...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~-- 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGK-- 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCC--
Confidence 4568999999999999999998764 556677776665432 12233333332 49999999976322
Q ss_pred CCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhc
Q 002169 757 KESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRK 831 (957)
Q Consensus 757 ~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~ 831 (957)
.....+|+..++.....+..++|+++..|.. ..+.|.+ ||. .++.+..|+.+++.++++.....
T Consensus 113 ---------~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 113 ---------ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred ---------hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1122345555555545555666666655543 3788888 874 56778999999999999966655
Q ss_pred CCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 832 IPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 832 ~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
.++. ++..++.+++...+ +.+.+..+++..-..+... ...||..-+++++.
T Consensus 182 ~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~---~~~it~~~~~~~L~ 233 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQA---QRKLTIPFLKETLG 233 (234)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHc---CCcCCHHHHHHHhc
Confidence 5443 34456778888886 8888888888665444332 35688877777663
No 270
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.22 E-value=2.8e-10 Score=132.37 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.+|+.||+.+.+ ...+..+.++.|..+..+.+..+|++||+...+
T Consensus 437 RvaIARALa~~P~lli~DEp~SaL------------Dvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV 493 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSAL------------DVSVQAQVLNLLKDLQEELGLTYLFISHDLAVV 493 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCcccc------------CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH
Confidence 778999999999999999998654 344556677777777677789999999987643
No 271
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.21 E-value=3e-11 Score=148.25 Aligned_cols=261 Identities=20% Similarity=0.274 Sum_probs=160.1
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS 718 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~ 718 (957)
...|++++|.+...+.+.+.+... ......|+|+|++||||+++|++|...+ +.+|+.++|..+-.
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 456899999988887777666431 2345569999999999999999998875 46999999976632
Q ss_pred -----ccccc----hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--c------
Q 002169 719 -----KWVGE----SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--Q------ 781 (957)
Q Consensus 719 -----~~vg~----~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--~------ 781 (957)
.+.|. ........|+.|..+ +||||||+.+ ...++..|+..++.-. .
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a~~G---tL~ldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELAHGG---TLFLEKVEYL-------------SPELQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeECCCC---EEEEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCce
Confidence 12221 111111234444444 9999999976 4556667777776421 0
Q ss_pred -CCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHH----HHHHHHHhc----CCCCCcc---cHHH
Q 002169 782 -RVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDRE----EIFRIHLRK----IPCSSDV---NIRE 842 (957)
Q Consensus 782 -~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~----~Il~~~l~~----~~~~~~~---~l~~ 842 (957)
..++.||++||..- ..+...|+|.. .+.+..|...+|. .+++.++.+ .+....+ .+..
T Consensus 454 ~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 530 (638)
T PRK11388 454 IPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (638)
T ss_pred EEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence 12678999998653 23444456643 3345566666663 344444432 2211122 2344
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC---chHHH--HHHHHHHHHHhcCchhhhhcc
Q 002169 843 LACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS---EIHSY--KELSAKFQRLVHSNAEADESG 917 (957)
Q Consensus 843 la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~---~~~~y--~~~~~~~~~~v~~~~~~~~~~ 917 (957)
|....---+.++|+++++.|+..+ +...|+.+|+...+..-.+. ..... ....+.+++..+........+
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~~~-----~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~l~~~E~~~i~~al~~~~g 605 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLALSS-----DNGRIRLSDLPEHLFTEQATDDVSATRLSTSLSLAELEKEAIINAAQVCGG 605 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHHhC-----CCCeecHHHCchhhhcccccccccccccccchhHHHHHHHHHHHHHHHhCC
Confidence 444442236899999999887653 24468888887665331110 00000 011234667777777777777
Q ss_pred cccccchhhh---hhhhhccCCc
Q 002169 918 YQLRPSKSIG---SNMWTLIKSI 937 (957)
Q Consensus 918 ~~~~~~~~~g---~~L~~~~k~~ 937 (957)
++.+.++..| .+||.++|..
T Consensus 606 n~~~aA~~LGisR~TLyrklk~~ 628 (638)
T PRK11388 606 RIQEMAALLGIGRTTLWRKMKQH 628 (638)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHc
Confidence 7777777776 8899999863
No 272
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.21 E-value=2e-10 Score=128.91 Aligned_cols=218 Identities=22% Similarity=0.240 Sum_probs=131.7
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-------CcEEEEe-
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-------LNFLAVK- 712 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-------~~~i~v~- 712 (957)
+...|++|+||+++|..|.-.+..| ...|+||.||+|||||++||+++..+. .+|....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4557899999999999987776432 235799999999999999999987652 2332000
Q ss_pred CCCc-----cc---------------cc----ccchHHHH------------------HHHHHHHHhCCCeEEEEeCCch
Q 002169 713 GPEL-----FS---------------KW----VGESEKAV------------------RSLFAKARANAPSIIFFDEIDG 750 (957)
Q Consensus 713 ~~~l-----~~---------------~~----vg~~~~~i------------------r~~f~~A~~~~p~ILfiDEid~ 750 (957)
.++. .+ .+ .|.++..+ ..++.+|..+ +||+||++.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~G---iL~lDEInr 155 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRG---ILYVDEVNL 155 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCC---EEEecChHh
Confidence 0000 00 00 01111111 1223333333 999999997
Q ss_pred hhhhcCCCCCCCcchHHHHHHHHHHHhccc-----------cCCcEEEEEecCCCC-CCChhhhCCCCcceecccCCCC-
Q 002169 751 LAAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD-KIDPALLRPGRFDRLLYVGPPN- 817 (957)
Q Consensus 751 l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~VI~aTN~~~-~id~aLlr~gRfd~~i~~~~P~- 817 (957)
+ ...+++.|+..|+... ...++++|++.|..+ .+.++++. ||...+.+..|.
T Consensus 156 L-------------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~ 220 (350)
T CHL00081 156 L-------------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKD 220 (350)
T ss_pred C-------------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCC
Confidence 6 4556677888775411 123567777777555 58999999 999999999887
Q ss_pred HHHHHHHHHHHHhcC--CCC--------Cccc--------------------HH---HHHHHccCCcHHHHHHHHHHHHH
Q 002169 818 ETDREEIFRIHLRKI--PCS--------SDVN--------------------IR---ELACLSEGCTGADISLICREAAI 864 (957)
Q Consensus 818 ~~er~~Il~~~l~~~--~~~--------~~~~--------------------l~---~la~~t~g~sg~dl~~l~~eA~~ 864 (957)
.+++.+|++...... +.. .... .. .++..+.--+.|--..+++-|..
T Consensus 221 ~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA 300 (350)
T CHL00081 221 PELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKA 300 (350)
T ss_pred hHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHH
Confidence 588999998753210 000 0001 11 12222222234444445555554
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 865 SAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 865 ~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
.|..+. ...|+.+|+..+..-+.++
T Consensus 301 ~Aal~G--R~~V~pdDv~~~a~~vL~H 325 (350)
T CHL00081 301 LAAFEG--RTEVTPKDIFKVITLCLRH 325 (350)
T ss_pred HHHHcC--CCCCCHHHHHHHHHHHHHH
Confidence 554443 6789999999887765544
No 273
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=3.2e-10 Score=128.95 Aligned_cols=186 Identities=18% Similarity=0.183 Sum_probs=128.2
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-------------
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------- 707 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~------------- 707 (957)
.+.++++|+|++.+++.+.+++.. -+.+..+||+||+|+||+++|.++|+.+-..
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 456889999999999999988763 2456679999999999999999999876221
Q ss_pred ---------------------EEEEeCC--Cccccc-ccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCC
Q 002169 708 ---------------------FLAVKGP--ELFSKW-VGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKES 759 (957)
Q Consensus 708 ---------------------~i~v~~~--~l~~~~-vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~ 759 (957)
++.+... +-..+. ..-....+|.+.+.+. ...+.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 1111110 000000 0012344566665543 356789999999966
Q ss_pred CCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCccc
Q 002169 760 DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN 839 (957)
Q Consensus 760 ~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~ 839 (957)
.....+.||..++.. ..++++|++|+.++.+.+.+++ |+ ..+.|++|+.++..+++...... ..+..
T Consensus 154 -----~~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 154 -----NANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred -----CHHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 456677899999853 4577888999999999999888 87 58899999999998888775421 11222
Q ss_pred HHHHHHHccCCcHHHHHHHHH
Q 002169 840 IRELACLSEGCTGADISLICR 860 (957)
Q Consensus 840 l~~la~~t~g~sg~dl~~l~~ 860 (957)
+..++..+.| +.+....+++
T Consensus 221 ~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 221 RAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHHHHHcCC-CHHHHHHHhc
Confidence 3567777877 5555555544
No 274
>PHA02244 ATPase-like protein
Probab=99.20 E-value=4.8e-10 Score=125.21 Aligned_cols=122 Identities=23% Similarity=0.317 Sum_probs=80.3
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC----CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP----ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~----~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
...+++|+||||||||++|+++|..++.+|+.++.- ++.+ ++.....-...-|-+|.. ...+|||||++.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~-- 193 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDASI-- 193 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcCC--
Confidence 356799999999999999999999999999998842 1111 111111101112223322 24599999999653
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhc---------cccCCcEEEEEecCCC-----------CCCChhhhCCCCcceecccC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDG---------LHQRVNVTVIAATNRP-----------DKIDPALLRPGRFDRLLYVG 814 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~---------~~~~~~v~VI~aTN~~-----------~~id~aLlr~gRfd~~i~~~ 814 (957)
..++..|...++. .....++.+|+|+|.+ ..+++|++. ||- .|+++
T Consensus 194 -----------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~d 259 (383)
T PHA02244 194 -----------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFD 259 (383)
T ss_pred -----------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCC
Confidence 2333344444431 1224578999999973 457999999 994 78999
Q ss_pred CCCH
Q 002169 815 PPNE 818 (957)
Q Consensus 815 ~P~~ 818 (957)
.|+.
T Consensus 260 yp~~ 263 (383)
T PHA02244 260 YDEK 263 (383)
T ss_pred CCcH
Confidence 9884
No 275
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.20 E-value=1.6e-10 Score=130.08 Aligned_cols=254 Identities=17% Similarity=0.201 Sum_probs=149.4
Q ss_pred cCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccc---
Q 002169 648 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWV--- 721 (957)
Q Consensus 648 i~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~v--- 721 (957)
++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.+|+.|+|..+-....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 356666666665555431 2345679999999999999999998765 46999999986532211
Q ss_pred --cch-------HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCC
Q 002169 722 --GES-------EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRV 783 (957)
Q Consensus 722 --g~~-------~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~ 783 (957)
|.. .......|+.|..+ +||||||+.+ ...++..|+..|+... ...
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gG---tL~Ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGG---TLFLDELATA-------------SLLVQEKLLRVIEYGEFERVGGSQTLQV 133 (329)
T ss_pred HhccccccccCcccccCCchhhCCCC---EEEeCChHhC-------------CHHHHHHHHHHHHcCcEEecCCCceecc
Confidence 110 01112346666555 9999999976 4556667777776432 124
Q ss_pred cEEEEEecCCCC-------CCChhhhCCCCcceecccCCCCHHHHH----HHHHHHH----hcCCCC--Cccc---HHHH
Q 002169 784 NVTVIAATNRPD-------KIDPALLRPGRFDRLLYVGPPNETDRE----EIFRIHL----RKIPCS--SDVN---IREL 843 (957)
Q Consensus 784 ~v~VI~aTN~~~-------~id~aLlr~gRfd~~i~~~~P~~~er~----~Il~~~l----~~~~~~--~~~~---l~~l 843 (957)
++.+|++||..- .+.+.|.. ||. .+.+..|...+|. .+++.++ .+++.. ..+. +..|
T Consensus 134 ~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L 210 (329)
T TIGR02974 134 DVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQL 210 (329)
T ss_pred ceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHH
Confidence 689999998542 23344554 553 3445556655553 3444433 333322 1233 3344
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH-----------HHHHhhC-----------C-----CchHHH
Q 002169 844 ACLSEGCTGADISLICREAAISAIEENLDASRITMQHLK-----------TAIRHVQ-----------P-----SEIHSY 896 (957)
Q Consensus 844 a~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~-----------~al~~~~-----------p-----~~~~~y 896 (957)
.....--+.+++++++++++..+-. ..++.+++. ....... + .....+
T Consensus 211 ~~y~WPGNvrEL~n~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 285 (329)
T TIGR02974 211 LEYHWPGNVRELKNVVERSVYRHGL-----EEAPIDEIIIDPFASPWRPKQAAPAVDEVNSTPTDLPSPSSIAAAFPLDL 285 (329)
T ss_pred HhCCCCchHHHHHHHHHHHHHhCCC-----CccchhhccccccccccccccccccccccccccccccccccccccccccH
Confidence 4444222689999999988876521 112222210 0000000 0 000123
Q ss_pred HHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 897 KELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 897 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
....+.+++.++........++....++..| .+||.++|.
T Consensus 286 ~~~l~~~E~~~I~~aL~~~~gn~~~aA~~LGisr~tL~rklkk 328 (329)
T TIGR02974 286 KQAQQDYEIELLQQALAEAQFNQRKAAELLGLTYHQLRGLLRK 328 (329)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHh
Confidence 4444568888888888888888888888776 789999875
No 276
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.20 E-value=3.4e-10 Score=127.12 Aligned_cols=215 Identities=22% Similarity=0.253 Sum_probs=132.6
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-------CCcEE-------
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-------GLNFL------- 709 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-------~~~~i------- 709 (957)
-|..|+|++++|..+.-.+..| ...+++|.|+||+||||+++++++.+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 3678999999998876554321 24569999999999999999999776 22221
Q ss_pred ------EE--eC-------------CCccc-----ccccch--HHH--------HHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 710 ------AV--KG-------------PELFS-----KWVGES--EKA--------VRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 710 ------~v--~~-------------~~l~~-----~~vg~~--~~~--------ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
+. .. .++-. ...|.. ++. ...++.+|..+ +||+||++.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~G---vL~lDEi~~L-- 143 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRG---ILYIDEVNLL-- 143 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCC---EEEecChHhC--
Confidence 00 00 01100 122211 011 12334444444 9999999976
Q ss_pred hcCCCCCCCcchHHHHHHHHHHHhccc-----------cCCcEEEEEecCCCC-CCChhhhCCCCcceecccCCCCH-HH
Q 002169 754 IRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD-KIDPALLRPGRFDRLLYVGPPNE-TD 820 (957)
Q Consensus 754 ~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~VI~aTN~~~-~id~aLlr~gRfd~~i~~~~P~~-~e 820 (957)
...+++.|+..|+.-. ...++++|+++|..+ .+.++++. ||...+.++.|.. ++
T Consensus 144 -----------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 144 -----------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVEL 210 (337)
T ss_pred -----------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHH
Confidence 3566777888775421 123567777777554 58999999 9998999988876 78
Q ss_pred HHHHHHHHHhcC--C------C----------------------CCcccH---HHHHHHccCCcHHHHHHHHHHHHHHHH
Q 002169 821 REEIFRIHLRKI--P------C----------------------SSDVNI---RELACLSEGCTGADISLICREAAISAI 867 (957)
Q Consensus 821 r~~Il~~~l~~~--~------~----------------------~~~~~l---~~la~~t~g~sg~dl~~l~~eA~~~a~ 867 (957)
|.+|++...... + + ..+... .+++..+..-+.|--..+++-|...|.
T Consensus 211 r~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aa 290 (337)
T TIGR02030 211 RVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAA 290 (337)
T ss_pred HHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Confidence 888888743210 0 0 001111 222333332234555666666666666
Q ss_pred HHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 868 EENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 868 ~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
.+. ...|+.+|+..+..-+.++
T Consensus 291 l~G--R~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 291 FEG--RTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred HcC--CCCCCHHHHHHHHHHHHHH
Confidence 554 6789999999888766544
No 277
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=4.1e-10 Score=126.30 Aligned_cols=169 Identities=12% Similarity=0.251 Sum_probs=121.4
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC--------cEEEEeCCC
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL--------NFLAVKGPE 715 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~--------~~i~v~~~~ 715 (957)
+|++|+|++.+++.+...+.. -+.+..+||+||+|+|||++|+++|+.+.. .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 589999999999999888752 345567899999999999999999997632 233332210
Q ss_pred cccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 716 LFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
+. .-....+|.+.+.+.. +...|++|||+|.+ .....+.||..|+. +..++++|.+|
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-------------~~~a~naLLK~LEe--pp~~t~~il~~ 130 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-------------TEQAQNAFLKTIEE--PPKGVFIILLC 130 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhc-------------CHHHHHHHHHHhcC--CCCCeEEEEEe
Confidence 11 1133457777765432 34569999999866 34567789999995 45578888888
Q ss_pred CCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccC
Q 002169 792 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG 849 (957)
Q Consensus 792 N~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g 849 (957)
+.++.+-+.+++ |+ ..++|+.|+.++....++..... . .+.....++..+.|
T Consensus 131 ~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 131 ENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred CChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 889999999998 77 58999999999888777665432 1 22335566666666
No 278
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.18 E-value=1.4e-10 Score=128.33 Aligned_cols=137 Identities=16% Similarity=0.183 Sum_probs=98.1
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc--cccchHH------H----HHHHHHHHHhCCCeEEEEe
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK--WVGESEK------A----VRSLFAKARANAPSIIFFD 746 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~--~vg~~~~------~----ir~~f~~A~~~~p~ILfiD 746 (957)
..++++|.||||||||++|+.+|..++.++++|++...+.. ++|.... . ....+..|.. .+.+|++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 45789999999999999999999999999999987655443 3332110 0 1234455543 35789999
Q ss_pred CCchhhhhcCCCCCCCcchHHHHHHHHHHHhc------------cccCCcEEEEEecCCCC------------CCChhhh
Q 002169 747 EIDGLAAIRGKESDGVSVSDRVMSQLLVELDG------------LHQRVNVTVIAATNRPD------------KIDPALL 802 (957)
Q Consensus 747 Eid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~------------~~~~~~v~VI~aTN~~~------------~id~aLl 802 (957)
|++.. ...+++.|...|+. +....+..||+|+|..+ .+++|++
T Consensus 142 Ein~a-------------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 142 EYDAG-------------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred hhhcc-------------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 99965 23344444444442 11234688999999765 3689999
Q ss_pred CCCCcceecccCCCCHHHHHHHHHHHHhc
Q 002169 803 RPGRFDRLLYVGPPNETDREEIFRIHLRK 831 (957)
Q Consensus 803 r~gRfd~~i~~~~P~~~er~~Il~~~l~~ 831 (957)
. ||-.++.++.|+.++-.+|+......
T Consensus 209 D--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 209 D--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred h--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 9 99777889999999999998876543
No 279
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.18 E-value=2.9e-10 Score=132.98 Aligned_cols=171 Identities=11% Similarity=0.209 Sum_probs=118.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHH---HHHHHHHHHhccCCeEEEEcCcccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQ---ALHEVFDSASQSAPAVVFIDELDAI 400 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~---~i~~vf~~a~~~~p~IL~IDEiD~l 400 (957)
..+++|||++|||||+|++++++++ +..++++++.++...+...... .+....+.. ...++|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 4579999999999999999999865 4677889988877665433222 122222222 24679999999988
Q ss_pred ccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC-CCCC---chhhhhCCCCcc--eeeeecCCCHHHHHHHHHH
Q 002169 401 APARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN-RPDS---IEPALRRPGRLD--REIEIAVPSPAQRLEILHA 474 (957)
Q Consensus 401 ~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN-~~~~---ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~ 474 (957)
..+. .....|..+++.+...++ .+|++++ .|.. +++.+++ ||. -.+.+..|+.++|.+|++.
T Consensus 219 ~~k~---------~~~e~lf~l~N~~~~~~k-~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 219 SYKE---------KTNEIFFTIFNNFIENDK-QLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred cCCH---------HHHHHHHHHHHHHHHcCC-cEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHH
Confidence 5322 233456666666544444 4455555 4443 4577877 775 3578999999999999999
Q ss_pred HHcCCCC--CCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 475 LLSGMEH--SLLDSEVEYLSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 475 ~l~~~~~--~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
.+...+. .++++.++.++....| ..+.+..++......+
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a 327 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWS 327 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence 9877553 6789999999998876 5566777776655433
No 280
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.17 E-value=2.1e-10 Score=129.17 Aligned_cols=259 Identities=17% Similarity=0.208 Sum_probs=154.3
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc-
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK- 719 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~- 719 (957)
.+++++|.+...+.+.+.+... ......|+|+|++||||+++|++|.... +.+|+.++|..+-..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 3567889888888887776532 2345679999999999999999998765 469999999876321
Q ss_pred ----cccchH-------HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--c-----
Q 002169 720 ----WVGESE-------KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--Q----- 781 (957)
Q Consensus 720 ----~vg~~~-------~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--~----- 781 (957)
+.|... ......|+.|..+ +|||||++.+ ...++..|+..++... .
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~gG---tL~l~~i~~L-------------~~~~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERADGG---TLFLDELATA-------------PMLVQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccCCC---eEEeCChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCc
Confidence 111110 0112345555544 9999999976 3455667777776421 1
Q ss_pred --CCcEEEEEecCCC-------CCCChhhhCCCCcceecccCCCCHHHHH----HHHHHHH----hcCCCC--Cccc---
Q 002169 782 --RVNVTVIAATNRP-------DKIDPALLRPGRFDRLLYVGPPNETDRE----EIFRIHL----RKIPCS--SDVN--- 839 (957)
Q Consensus 782 --~~~v~VI~aTN~~-------~~id~aLlr~gRfd~~i~~~~P~~~er~----~Il~~~l----~~~~~~--~~~~--- 839 (957)
..++.||++|+.. ..+.+.|.. ||. .+.+..|...+|. .+++.++ ++++.. ..+.
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~a 213 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERA 213 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 1358899998764 234455555 553 3344555555553 3444443 333322 1233
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH-----HHHH--H--hhC-----CCchHHHHHHHHHHHH
Q 002169 840 IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHL-----KTAI--R--HVQ-----PSEIHSYKELSAKFQR 905 (957)
Q Consensus 840 l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~-----~~al--~--~~~-----p~~~~~y~~~~~~~~~ 905 (957)
+..|.....--+.++|++++++|+..+... .++.+++ .... . ... +.....+..+.+.+++
T Consensus 214 l~~L~~y~WPGNvrEL~~vl~~a~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Er 288 (326)
T PRK11608 214 RETLLNYRWPGNIRELKNVVERSVYRHGTS-----EYPLDNIIIDPFKRRPAEEAIAVSETTSLPTLPLDLREWQHQQEK 288 (326)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCCC-----CCchhhcccccccccccccccccccccccccccccHHHHHHHHHH
Confidence 333333333236799999999988754221 1222221 0000 0 000 1100124444466888
Q ss_pred HhcCchhhhhcccccccchhhh---hhhhhccCCc
Q 002169 906 LVHSNAEADESGYQLRPSKSIG---SNMWTLIKSI 937 (957)
Q Consensus 906 ~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~~ 937 (957)
.++........++..+.++..| .+||.++|..
T Consensus 289 ~~I~~aL~~~~gn~~~aA~~LGIsR~tLyrklk~~ 323 (326)
T PRK11608 289 ELLQRSLQQAKFNQKRAAELLGLTYHQLRALLKKH 323 (326)
T ss_pred HHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHc
Confidence 8888778877778877777776 7899998863
No 281
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=9.7e-10 Score=132.86 Aligned_cols=185 Identities=17% Similarity=0.243 Sum_probs=135.5
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC---------------
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------------- 355 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------------- 355 (957)
...+|++|.|.+..++.|...+... ..+..+|||||+|+|||++|+++|+.+.+
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 3467899999999999998886422 23456899999999999999999998753
Q ss_pred ----------cEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHH
Q 002169 356 ----------NLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLN 421 (957)
Q Consensus 356 ----------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~ 421 (957)
+++.+++.+- .....++.+.+.+.. ....|++|||+|.+.. ...+.|+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~naLLK 143 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNAFLK 143 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHHHHH
Confidence 2233333211 113346666655532 2346999999998832 34567888
Q ss_pred HhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 422 LMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 422 ~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.. ...+++|++|+....+.+.+++ |. ..++|..++.++....++..+...+..+++..++.++..+.| ..+
T Consensus 144 ~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr 217 (614)
T PRK14971 144 TLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMR 217 (614)
T ss_pred HHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88874 3567888888888899999998 65 348999999999999999988888888888889999998865 444
Q ss_pred HHHHHHHH
Q 002169 502 DLAALCNE 509 (957)
Q Consensus 502 Di~~l~~~ 509 (957)
++..++..
T Consensus 218 ~al~~Lek 225 (614)
T PRK14971 218 DALSIFDQ 225 (614)
T ss_pred HHHHHHHH
Confidence 55444443
No 282
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.15 E-value=4.6e-10 Score=125.38 Aligned_cols=183 Identities=17% Similarity=0.237 Sum_probs=128.9
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc----------EEEEeC
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN----------FLAVKG 713 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~----------~i~v~~ 713 (957)
.|++|+|++++++.+...+.. -+.+..+||+||+|+||+++|+++|+.+-.. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 589999999999999998863 2456789999999999999999999875221 111222
Q ss_pred CCcc---------cc--------ccc--------chHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcc
Q 002169 714 PELF---------SK--------WVG--------ESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSV 764 (957)
Q Consensus 714 ~~l~---------~~--------~vg--------~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~ 764 (957)
+++. ++ ..| -....+|.+.+.+.. +...|++||++|.+
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------------- 136 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------------- 136 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-------------
Confidence 2222 00 000 012345666555543 34579999999976
Q ss_pred hHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 002169 765 SDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELA 844 (957)
Q Consensus 765 ~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la 844 (957)
.....+.||..|+... +.++|.+|+.++.+-|.+++ |+ ..+.|++++.++..++++........ +.+...++
T Consensus 137 ~~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 137 NEAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred CHHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 3456778999998653 45778888999999999999 87 58999999999999888876432221 12346788
Q ss_pred HHccCCcHHHHHHHHH
Q 002169 845 CLSEGCTGADISLICR 860 (957)
Q Consensus 845 ~~t~g~sg~dl~~l~~ 860 (957)
....| +.+++..+++
T Consensus 209 ~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 209 ALAQG-SPGAAIANIE 223 (314)
T ss_pred HHcCC-CHHHHHHHHH
Confidence 88888 6666666554
No 283
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.15 E-value=1.1e-09 Score=121.16 Aligned_cols=103 Identities=22% Similarity=0.229 Sum_probs=63.3
Q ss_pred CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC------------CCCchhhhhCCCCcce
Q 002169 389 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR------------PDSIEPALRRPGRLDR 456 (957)
Q Consensus 389 p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~------------~~~ld~al~r~gRfd~ 456 (957)
|.||||||+|.|- ..-..-|...|+. .-.-+||++||+ |.-+|..|+. |+ -
T Consensus 279 pGVLFIDEvHmLD-----------iEcFsfLnralEs---~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl-l 341 (398)
T PF06068_consen 279 PGVLFIDEVHMLD-----------IECFSFLNRALES---ELSPIIILATNRGITKIRGTDIISPHGIPLDLLD--RL-L 341 (398)
T ss_dssp E-EEEEESGGGSB-----------HHHHHHHHHHHTS---TT--EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-E
T ss_pred cceEEecchhhcc-----------HHHHHHHHHHhcC---CCCcEEEEecCceeeeccCccCcCCCCCCcchHh--hc-E
Confidence 7799999988772 2333444455543 334588899996 5567777776 65 3
Q ss_pred eeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHH
Q 002169 457 EIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCN 508 (957)
Q Consensus 457 ~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~ 508 (957)
.|...+++.++..+|++..+......+++..++.|++.....+-+..-+|+.
T Consensus 342 II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~ 393 (398)
T PF06068_consen 342 IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLIT 393 (398)
T ss_dssp EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHH
T ss_pred EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhh
Confidence 4788899999999999999999999999999998887765555444444443
No 284
>PRK04132 replication factor C small subunit; Provisional
Probab=99.14 E-value=8.8e-10 Score=135.52 Aligned_cols=157 Identities=22% Similarity=0.242 Sum_probs=121.1
Q ss_pred cceeeC--CCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCC------CeEEEEeCC
Q 002169 682 GILMFG--PPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANA------PSIIFFDEI 748 (957)
Q Consensus 682 giLL~G--PpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~------p~ILfiDEi 748 (957)
+-+..| |++.||||+|+|||+++ +.+++.+++++..+ ...+|.++..+.... ..|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 456678 99999999999999997 56899999988532 346677766544322 369999999
Q ss_pred chhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHH
Q 002169 749 DGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIH 828 (957)
Q Consensus 749 d~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~ 828 (957)
|.|. ...++.|+..|+.. ..++.+|++||+++.+.+++++ || ..+.|++|+.++....++..
T Consensus 640 D~Lt-------------~~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 640 DALT-------------QDAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred ccCC-------------HHHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 9773 34577899999853 4578999999999999999998 87 58999999999988888888
Q ss_pred HhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHH
Q 002169 829 LRKIPCS-SDVNIRELACLSEGCTGADISLICREAA 863 (957)
Q Consensus 829 l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~ 863 (957)
+.+.++. ++..+..++..+.| +.|...++++.++
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7765543 34568889999998 5555555555443
No 285
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.14 E-value=3.3e-10 Score=136.17 Aligned_cols=259 Identities=19% Similarity=0.209 Sum_probs=157.1
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELF 717 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~ 717 (957)
+..++++++|.+...+.+.+.+... ......|+|+|++|||||++|++|...+ +.+|+.++|..+.
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 4467889999999988888777542 2345679999999999999999999875 5699999998763
Q ss_pred cccc-----cchH----H---HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-----
Q 002169 718 SKWV-----GESE----K---AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----- 780 (957)
Q Consensus 718 ~~~v-----g~~~----~---~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----- 780 (957)
..+. |... . .....|+.|..+ +||||||+.+ ...++..|+..++...
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~G---tL~ldei~~L-------------~~~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELADGG---TLFLDEIGEI-------------SPAFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccccCCC---eEEEechhhC-------------CHHHHHHHHHHHhcCcEEECC
Confidence 3211 1100 0 001224444433 9999999976 3456667888776421
Q ss_pred ----cCCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHH----HHHHHHHHHhc----CCCCCccc--
Q 002169 781 ----QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETD----REEIFRIHLRK----IPCSSDVN-- 839 (957)
Q Consensus 781 ----~~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~e----r~~Il~~~l~~----~~~~~~~~-- 839 (957)
...++.+|++|+..-. .+...|+|.. .+.+..|...+ ...+++.++.+ ++....+.
T Consensus 324 ~~~~~~~~~riI~~s~~~l~---~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~ 400 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLE---EAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPS 400 (534)
T ss_pred CCceEeecEEEEEeCCCCHH---HHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHH
Confidence 0125889999985421 2233445532 23334444443 33455555432 32222222
Q ss_pred -HHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC-----------------------------
Q 002169 840 -IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ----------------------------- 889 (957)
Q Consensus 840 -l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~----------------------------- 889 (957)
+..|.....--+.++++++++.|+..+ +...|+.+|+...+....
T Consensus 401 a~~~L~~~~WPGNvrEL~~v~~~a~~~~-----~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (534)
T TIGR01817 401 AIRVLMSCKWPGNVRELENCLERTATLS-----RSGTITRSDFSCQSGQCLSPMLAKTCPHGHISIDPLAGTTPPHSPAS 475 (534)
T ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHhC-----CCCcccHHHCchhhccccccccccccccccccccccccccccccccc
Confidence 344444443336899999999888654 234577777642221000
Q ss_pred ---CCchHHHHHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 890 ---PSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 890 ---p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
|... .... .+.+++..+........++..+.++..| .+||.++|.
T Consensus 476 ~~~~~~~-~~~~-~~~~Er~~i~~aL~~~~gn~~~aA~~LGisr~tLy~klk~ 526 (534)
T TIGR01817 476 AALPGEP-GLSG-PTLSERERLIAALEQAGWVQAKAARLLGMTPRQVGYALRK 526 (534)
T ss_pred ccccccc-cchh-HHHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 0000 0111 2336777777777777888888777776 789999886
No 286
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.14 E-value=1.2e-09 Score=122.76 Aligned_cols=170 Identities=27% Similarity=0.371 Sum_probs=116.1
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC---------------------
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG--------------------- 705 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~--------------------- 705 (957)
+++|.+++...+..++... + +.+..+||+||||||||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~----------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES----------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CcccchhHHHHHHHHHHhc----------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 5667777777776665411 1 2333599999999999999999999886
Q ss_pred ---CcEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhc
Q 002169 706 ---LNFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDG 778 (957)
Q Consensus 706 ---~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~ 778 (957)
..++.++.++....- .....++.+...... +...|++|||+|.+. ....+.++..++.
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt-------------~~A~nallk~lEe 135 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT-------------EDAANALLKTLEE 135 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh-------------HHHHHHHHHHhcc
Confidence 477888887764421 124445555554433 345799999999874 3556788888884
Q ss_pred cccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHH
Q 002169 779 LHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLI 858 (957)
Q Consensus 779 ~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l 858 (957)
+..+..+|++||+++.+-+.+.+ |+ ..+.|++|.........+ +..+..++....| |++..
T Consensus 136 --p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e----------~~~l~~i~~~~~g----d~r~~ 196 (325)
T COG0470 136 --PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE----------DQGLEEIAAVAEG----DARKA 196 (325)
T ss_pred --CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh----------ccchhHHHHHHHH----HHHcC
Confidence 45688999999999999999998 87 477887755544444333 3345555555554 55555
Q ss_pred HHH
Q 002169 859 CRE 861 (957)
Q Consensus 859 ~~e 861 (957)
++.
T Consensus 197 i~~ 199 (325)
T COG0470 197 INP 199 (325)
T ss_pred CCH
Confidence 443
No 287
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.14 E-value=6.3e-09 Score=127.78 Aligned_cols=133 Identities=21% Similarity=0.318 Sum_probs=94.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccc------cccccc----chhHHHHHHHHHHHhccCCeEEEEcCc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPE------VVSQNY----GESEQALHEVFDSASQSAPAVVFIDEL 397 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~------l~~~~~----ge~e~~i~~vf~~a~~~~p~IL~IDEi 397 (957)
..-++||.||..+|||+++..+|.+.|..|+.||-.+ .++.|+ |..+.+-+.+.+..+.+ ..|++||+
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G--yWIVLDEL 964 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG--YWIVLDEL 964 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC--cEEEeecc
Confidence 3457999999999999999999999999999998643 334443 22232323333333333 49999998
Q ss_pred cccccCCcCCCchHHHHHHHHHHHHhhcc------------ccCCCeEEEEecCCCC------CchhhhhCCCCcceeee
Q 002169 398 DAIAPARKDGGEELSQRMVATLLNLMDGV------------CRTDGVLVIAATNRPD------SIEPALRRPGRLDREIE 459 (957)
Q Consensus 398 D~l~~~~~~~~~~~~~~i~~~Ll~~ld~l------------~~~~~v~vI~ttN~~~------~ld~al~r~gRfd~~I~ 459 (957)
.-. ...++..|..++|.- ..+.++.+++|-|+|- -+..|+|. ||-. ++
T Consensus 965 NLA-----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFlE-~h 1030 (4600)
T COG5271 965 NLA-----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFLE-MH 1030 (4600)
T ss_pred ccC-----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhHh-hh
Confidence 533 234666677777752 3456788888888875 57789998 9954 77
Q ss_pred ecCCCHHHHHHHHHHHH
Q 002169 460 IAVPSPAQRLEILHALL 476 (957)
Q Consensus 460 i~~P~~~~r~~Il~~~l 476 (957)
|..-.+++...||+..+
T Consensus 1031 FddipedEle~ILh~rc 1047 (4600)
T COG5271 1031 FDDIPEDELEEILHGRC 1047 (4600)
T ss_pred cccCcHHHHHHHHhccC
Confidence 88888888888887543
No 288
>PRK06620 hypothetical protein; Validated
Probab=99.14 E-value=4.6e-10 Score=118.78 Aligned_cols=144 Identities=14% Similarity=0.272 Sum_probs=101.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGE 409 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~ 409 (957)
..++||||||||||+|++++++..+..++. .... ....+ ...++|+|||+|.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 679999999999999999999887653322 1100 00111 123699999998441
Q ss_pred hHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC--chhhhhCCCCcce--eeeecCCCHHHHHHHHHHHHcCCCCCCCh
Q 002169 410 ELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS--IEPALRRPGRLDR--EIEIAVPSPAQRLEILHALLSGMEHSLLD 485 (957)
Q Consensus 410 ~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~--ld~al~r~gRfd~--~I~i~~P~~~~r~~Il~~~l~~~~~~l~~ 485 (957)
. ..|..+++.+...+..++|+++..|.. + |++++ |+.. .+.+..|+.+.+..+++..+...++.+++
T Consensus 99 ---~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ 169 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISR 169 (214)
T ss_pred ---H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 1 245556555555666777777766654 5 78888 7752 58999999999999999988877888999
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 486 SEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 486 ~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
+.++.++.+..|- .+.+..++..
T Consensus 170 ev~~~L~~~~~~d-~r~l~~~l~~ 192 (214)
T PRK06620 170 QIIDFLLVNLPRE-YSKIIEILEN 192 (214)
T ss_pred HHHHHHHHHccCC-HHHHHHHHHH
Confidence 9999999988653 3444444443
No 289
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.14 E-value=4.7e-10 Score=136.78 Aligned_cols=215 Identities=27% Similarity=0.343 Sum_probs=133.6
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-------------------
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA------------------- 704 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~------------------- 704 (957)
-|.+|+|++.++..+.-+...+ ...++||.||+|||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 3778999999998776554321 12469999999999999999999887
Q ss_pred ----------------CCcEEEEeCCCcccccccch--HHHH--------HHHHHHHHhCCCeEEEEeCCchhhhhcCCC
Q 002169 705 ----------------GLNFLAVKGPELFSKWVGES--EKAV--------RSLFAKARANAPSIIFFDEIDGLAAIRGKE 758 (957)
Q Consensus 705 ----------------~~~~i~v~~~~l~~~~vg~~--~~~i--------r~~f~~A~~~~p~ILfiDEid~l~~~r~~~ 758 (957)
..+|+.+.........+|.. .+.+ ..++..|..+ |||||||+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~G---iL~lDEi~~l------- 138 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRG---ILYIDEVNLL------- 138 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCC---eEEeChhhhC-------
Confidence 24666665443322223321 1111 2233334333 9999999976
Q ss_pred CCCCcchHHHHHHHHHHHhccc-----------cCCcEEEEEecCCC-CCCChhhhCCCCcceecccCCCC-HHHHHHHH
Q 002169 759 SDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRP-DKIDPALLRPGRFDRLLYVGPPN-ETDREEIF 825 (957)
Q Consensus 759 ~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~VI~aTN~~-~~id~aLlr~gRfd~~i~~~~P~-~~er~~Il 825 (957)
...+++.|+..|+.-. ...++++|+++|.. ..+.++|+. ||+..|.++.+. .+++.+++
T Consensus 139 ------~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 139 ------DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 4566778888886321 12357889988854 357899999 999888887765 46677777
Q ss_pred HHHHhcC--C---------------------------C-CCcccHHHHHHHcc--CC-cHHHHHHHHHHHHHHHHHHhcC
Q 002169 826 RIHLRKI--P---------------------------C-SSDVNIRELACLSE--GC-TGADISLICREAAISAIEENLD 872 (957)
Q Consensus 826 ~~~l~~~--~---------------------------~-~~~~~l~~la~~t~--g~-sg~dl~~l~~eA~~~a~~~~~~ 872 (957)
+...... + + ..+..+..++..+. |. +.|-...+++-|...|..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~g-- 288 (633)
T TIGR02442 211 RRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDG-- 288 (633)
T ss_pred HHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC--
Confidence 6432200 0 0 01111223333221 33 23444455555555555443
Q ss_pred CCCCCHHHHHHHHHhhCCC
Q 002169 873 ASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 873 ~~~It~~d~~~al~~~~p~ 891 (957)
...|+.+|+..|+.-+.++
T Consensus 289 r~~V~~~Dv~~A~~lvL~h 307 (633)
T TIGR02442 289 RRRVTAEDVREAAELVLPH 307 (633)
T ss_pred CCcCCHHHHHHHHHHHhhh
Confidence 6789999999988776544
No 290
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.13 E-value=4.5e-10 Score=134.11 Aligned_cols=261 Identities=18% Similarity=0.198 Sum_probs=148.8
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELF 717 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~ 717 (957)
....|++++|.+...+.+.+.+... ......++|+|++||||+++|+++...+ +.+|+.++|..+-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 5678999999998777776665321 1235569999999999999999997665 4699999998764
Q ss_pred ccc-----ccchH-------HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-----
Q 002169 718 SKW-----VGESE-------KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----- 780 (957)
Q Consensus 718 ~~~-----vg~~~-------~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----- 780 (957)
... .|... .....+|+.|..+ .||||||+.+ ...++..|+..++...
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~G---tL~LdeI~~L-------------~~~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQANGG---SVLLDEIGEM-------------SPRMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcCCC---EEEEeChhhC-------------CHHHHHHHHHHHhcCCcccCC
Confidence 321 11110 1113456666555 9999999976 3455566777775421
Q ss_pred ----cCCcEEEEEecCCCCC-------CChhhhCCCCcceecccCCCCHHHHH----HH----HHHHHhcCCCC-CcccH
Q 002169 781 ----QRVNVTVIAATNRPDK-------IDPALLRPGRFDRLLYVGPPNETDRE----EI----FRIHLRKIPCS-SDVNI 840 (957)
Q Consensus 781 ----~~~~v~VI~aTN~~~~-------id~aLlr~gRfd~~i~~~~P~~~er~----~I----l~~~l~~~~~~-~~~~l 840 (957)
...++.||++|+.+-. ..+.|.. |+. .+.+..|...+|. .+ ++.+..+.+.. ..+..
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~ 408 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAA 408 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 1236789999876531 2333443 432 3445566665554 22 33333344332 12333
Q ss_pred H---HHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHH--HHHHhh-CC--CchHHHHHHHHHHHHHhcCchh
Q 002169 841 R---ELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLK--TAIRHV-QP--SEIHSYKELSAKFQRLVHSNAE 912 (957)
Q Consensus 841 ~---~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~--~al~~~-~p--~~~~~y~~~~~~~~~~v~~~~~ 912 (957)
+ .|.....--+.+++++++.+|+..+ +...|+.+|+. ...... .+ .....+.+..+.+++.++....
T Consensus 409 ~a~~~L~~y~WPGNvreL~nvl~~a~~~~-----~~~~i~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~~E~~~i~~~l 483 (520)
T PRK10820 409 DLNTVLTRYGWPGNVRQLKNAIYRALTQL-----EGYELRPQDILLPDYDAAVAVGEDAMEGSLDEITSRFERSVLTRLY 483 (520)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhC-----CCCcccHHHcCCcccccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 3 3333322226799999998887654 23456777642 110000 00 0001233444556666555433
Q ss_pred hhhcccccccchhhh---hhhhhccCCc
Q 002169 913 ADESGYQLRPSKSIG---SNMWTLIKSI 937 (957)
Q Consensus 913 ~~~~~~~~~~~~~~g---~~L~~~~k~~ 937 (957)
.... ...+.++..| .+||.++|.-
T Consensus 484 ~~~~-~~~~aA~~LGisr~tL~rkl~~~ 510 (520)
T PRK10820 484 RNYP-STRKLAKRLGVSHTAIANKLREY 510 (520)
T ss_pred HHCC-CHHHHHHHhCCCHHHHHHHHHHc
Confidence 3221 2334444444 7799998873
No 291
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=8.8e-10 Score=118.81 Aligned_cols=176 Identities=27% Similarity=0.403 Sum_probs=121.0
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcC-CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-ccccc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIG-TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVGE 723 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~-~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~-~~vg~ 723 (957)
..|+||+++|+.+.-++.--+++.++-..+. --.|++||++||+|+|||.+||-+|+..+.||+.|.+..+.. .|+|.
T Consensus 15 ~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGr 94 (444)
T COG1220 15 RYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGR 94 (444)
T ss_pred hHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccc
Confidence 3689999999998877754333332222221 235889999999999999999999999999999998765521 12221
Q ss_pred hHHH----------------------------------------------------------------------------
Q 002169 724 SEKA---------------------------------------------------------------------------- 727 (957)
Q Consensus 724 ~~~~---------------------------------------------------------------------------- 727 (957)
....
T Consensus 95 DVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~eIe 174 (444)
T COG1220 95 DVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDKEIE 174 (444)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCccEEE
Confidence 1000
Q ss_pred -------------------------H-----------------------------------------HHHHHHHHhCCCe
Q 002169 728 -------------------------V-----------------------------------------RSLFAKARANAPS 741 (957)
Q Consensus 728 -------------------------i-----------------------------------------r~~f~~A~~~~p~ 741 (957)
+ +..+..|.+. .
T Consensus 175 iev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~--G 252 (444)
T COG1220 175 IEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQN--G 252 (444)
T ss_pred EEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc--C
Confidence 0 2233334333 3
Q ss_pred EEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------cCCcEEEEEec----CCCCCCChhhhCCCCcce
Q 002169 742 IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTVIAAT----NRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 742 ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~VI~aT----N~~~~id~aLlr~gRfd~ 809 (957)
|+||||||.++...+.. +..-.-+-++..||-.++|-. ..+++++|++. ..|..+-|.|. |||.-
T Consensus 253 IvFIDEIDKIa~~~~~g-~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfPI 329 (444)
T COG1220 253 IVFIDEIDKIAKRGGSG-GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFPI 329 (444)
T ss_pred eEEEehhhHHHhcCCCC-CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCce
Confidence 99999999998765422 222223456778888887642 34568888865 46777888875 69999
Q ss_pred ecccCCCCHHHHHHHHH
Q 002169 810 LLYVGPPNETDREEIFR 826 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~ 826 (957)
.+++...+.++-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999998887774
No 292
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=7.5e-10 Score=135.08 Aligned_cols=143 Identities=23% Similarity=0.296 Sum_probs=104.3
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEEEeCCCccc--ccccchHHHHHHHHHHHH-hCCCeEE
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAVKGPELFS--KWVGESEKAVRSLFAKAR-ANAPSII 743 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v~~~~l~~--~~vg~~~~~ir~~f~~A~-~~~p~IL 743 (957)
.+..++.+|+|.||+|||.++.-+|... +..++.++...+.. ++.|+.+..++.+.+++. .+..-||
T Consensus 205 Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvIL 284 (898)
T KOG1051|consen 205 RKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVIL 284 (898)
T ss_pred ccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEE
Confidence 3455789999999999999999999764 34677777765543 578999999999999988 5566799
Q ss_pred EEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC-----CCChhhhCCCCcceecccCCCCH
Q 002169 744 FFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD-----KIDPALLRPGRFDRLLYVGPPNE 818 (957)
Q Consensus 744 fiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~ 818 (957)
||||+|.+....... ......+.| .. ...++++.+|+||...+ .-||++-| ||+ .+.++.|+.
T Consensus 285 figelh~lvg~g~~~-----~~~d~~nlL-kp---~L~rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~ 352 (898)
T KOG1051|consen 285 FLGELHWLVGSGSNY-----GAIDAANLL-KP---LLARGGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSV 352 (898)
T ss_pred EecceeeeecCCCcc-----hHHHHHHhh-HH---HHhcCCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcc
Confidence 999999887654331 122223322 22 22355699999887333 24999999 996 778999998
Q ss_pred HHHHHHHHHHHhc
Q 002169 819 TDREEIFRIHLRK 831 (957)
Q Consensus 819 ~er~~Il~~~l~~ 831 (957)
+....|++....+
T Consensus 353 ~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 353 ENLSLILPGLSER 365 (898)
T ss_pred cchhhhhhhhhhh
Confidence 8777777766655
No 293
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.13 E-value=8e-10 Score=117.48 Aligned_cols=170 Identities=19% Similarity=0.324 Sum_probs=110.0
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccccccchHH-HHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSKWVGESEK-AVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~~vg~~~~-~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
..++||||+|+|||.|.+|++++. +..++.+++.++...+...... .+..+.+..+ ...+|+||+++.+...
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc
Confidence 458999999999999999998874 4567778776665443322111 1222223332 3459999999988432
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC---CChhhhCCCCcce--ecccCCCCHHHHHHHHHHHH
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFDR--LLYVGPPNETDREEIFRIHL 829 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~---id~aLlr~gRfd~--~i~~~~P~~~er~~Il~~~l 829 (957)
......+...++.....+..+||.+...|.. +++.|.+ ||.. .+.+.+|+.++|.+|++..+
T Consensus 113 -----------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 113 -----------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHH
Confidence 3445566677776656656666555555554 5778888 8754 77889999999999999999
Q ss_pred hcCCCCCccc-HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 830 RKIPCSSDVN-IRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 830 ~~~~~~~~~~-l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
...++.-+.+ ...++....+ +.++|..+++.....+
T Consensus 180 ~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 180 KERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAYA 216 (219)
T ss_dssp HHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Confidence 8877664333 5667777765 8889988888665544
No 294
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.12 E-value=6.2e-10 Score=115.47 Aligned_cols=144 Identities=21% Similarity=0.268 Sum_probs=102.0
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCCc------------------------EEEEeCCCcccccccchHHHHHHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGLN------------------------FLAVKGPELFSKWVGESEKAVRSLFA 733 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~~------------------------~i~v~~~~l~~~~vg~~~~~ir~~f~ 733 (957)
+.+..+||+||+|+|||++|+++|+.+... +..+.... . .-....++.+++
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 345679999999999999999999886431 22222111 0 012356666676
Q ss_pred HHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcce
Q 002169 734 KARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 734 ~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~ 809 (957)
.+.. ....|++|||+|.+. ...++.|+..|+.. ..+..+|++|+.+..+.+++.+ |+ .
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~-------------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~ 148 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN-------------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-Q 148 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC-------------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-E
Confidence 6654 345799999999773 33466788888863 3467777888888999999998 77 4
Q ss_pred ecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccC
Q 002169 810 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG 849 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g 849 (957)
++.+++|+.++..++++.. ++. +..+..++..+.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 8999999999988888776 332 3346666666665
No 295
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.12 E-value=7.2e-10 Score=113.85 Aligned_cols=184 Identities=18% Similarity=0.238 Sum_probs=119.5
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-C----CcEEEEeCC
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-G----LNFLAVKGP 714 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-~----~~~i~v~~~ 714 (957)
..+..++||+|.++..+.+.-.... ..-.+++|.|||||||||-+.++|+++ | -.+.+++++
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNAS 87 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNAS 87 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCc
Confidence 4555678999999999988766542 223579999999999999999999986 3 245667776
Q ss_pred CcccccccchHHHHHHHHHHHHhCCC----eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEe
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAP----SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAA 790 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p----~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~a 790 (957)
+-.+- ...+.--+.|+.-+..-| .|+++||+|++... .+.+|-+.|+=. .....+..+
T Consensus 88 deRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g-------------AQQAlRRtMEiy--S~ttRFala 149 (333)
T KOG0991|consen 88 DERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG-------------AQQALRRTMEIY--SNTTRFALA 149 (333)
T ss_pred ccccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-------------HHHHHHHHHHHH--cccchhhhh
Confidence 64321 112233345655544333 59999999988432 223344444422 335678889
Q ss_pred cCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHh--cCCCCCcccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 791 TNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLR--KIPCSSDVNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 791 TN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~--~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
+|..+.|-+.+.+ |+. ++.|...+..+...-+....+ +.+. .+.-++.+....+| |++..++..
T Consensus 150 CN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~y-t~dgLeaiifta~G----DMRQalNnL 215 (333)
T KOG0991|consen 150 CNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNY-TDDGLEAIIFTAQG----DMRQALNNL 215 (333)
T ss_pred hcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCC-CcchHHHhhhhccc----hHHHHHHHH
Confidence 9999999888887 775 555555555444333333333 3333 34457888888888 888887753
No 296
>PRK09087 hypothetical protein; Validated
Probab=99.11 E-value=1.8e-09 Score=115.24 Aligned_cols=172 Identities=16% Similarity=0.176 Sum_probs=114.5
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD 760 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~ 760 (957)
..++|+||+|+|||+|+++++...+..++... ++. ..++..... .+|+|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~--~~~-----------~~~~~~~~~---~~l~iDDi~~~~~------- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPN--EIG-----------SDAANAAAE---GPVLIEDIDAGGF------- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHH--Hcc-----------hHHHHhhhc---CeEEEECCCCCCC-------
Confidence 34899999999999999999988766544332 211 112222222 3899999996521
Q ss_pred CCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhcCCCC
Q 002169 761 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS 835 (957)
Q Consensus 761 ~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~~~~~ 835 (957)
.. .++...++.....+..+||.++..|.. ..+.|++ ||. .++.+..|+.++|.++++.++...++.
T Consensus 102 ----~~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 102 ----DE---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred ----CH---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 11 234455554444445556655554442 3678888 774 688999999999999999999876654
Q ss_pred -CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 836 -SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 836 -~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
.+..++.+++...| +.+.+..+++.....+... ...||...++++++.+
T Consensus 173 l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~---~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 173 VDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER---KSRITRALAAEVLNEM 222 (226)
T ss_pred CCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHhh
Confidence 34456778888886 6666666665555444443 4568988888888764
No 297
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.9e-09 Score=121.07 Aligned_cols=207 Identities=18% Similarity=0.264 Sum_probs=140.1
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-----EEEEeccccccccc-
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-----LFTVNGPEVVSQNY- 370 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-----~i~i~~~~l~~~~~- 370 (957)
.+.+.+.+++++..++...+.. ..|.++++|||||||||++++.+++++... +++|||....+.+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~--------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG--------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC--------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 4789999999999986555332 234569999999999999999999888443 89999976544321
Q ss_pred --------------chh-HHHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEE
Q 002169 371 --------------GES-EQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLV 434 (957)
Q Consensus 371 --------------ge~-e~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~v 434 (957)
|.. ......+++.... ...-|+++||+|.|..+.+ .++-.|+...+.. ..++.+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~v 159 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVSI 159 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEEE
Confidence 111 1222333333332 3467999999999976542 3444454444443 456889
Q ss_pred EEecCCCC---CchhhhhCCCCcc-eeeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHHHcCCC--cHHHHHHH
Q 002169 435 IAATNRPD---SIEPALRRPGRLD-REIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSMATHGF--VGADLAAL 506 (957)
Q Consensus 435 I~ttN~~~---~ld~al~r~gRfd-~~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~~t~g~--~gaDi~~l 506 (957)
|+.+|..+ .+++.+.+ +|. .+|.|++++.+|..+|+...... ....+++..++..|...... ..+-...+
T Consensus 160 i~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 160 IAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred EEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 99999864 67788877 442 34899999999999999988764 23445666666665443222 33444568
Q ss_pred HHHHHHHHHHHhccccc
Q 002169 507 CNEAALVCLRRYSKIQT 523 (957)
Q Consensus 507 ~~~A~~~a~rr~~~~~~ 523 (957)
|+.|+..|-++......
T Consensus 238 lr~A~eiAe~~~~~~v~ 254 (366)
T COG1474 238 LRRAGEIAEREGSRKVS 254 (366)
T ss_pred HHHHHHHHHhhCCCCcC
Confidence 88898888877655443
No 298
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.11 E-value=5.8e-10 Score=131.82 Aligned_cols=110 Identities=21% Similarity=0.240 Sum_probs=67.8
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHhCC--cEEEEe-----------CCCccc---------ccc-c----------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVK-----------GPELFS---------KWV-G---------- 722 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~-----------~~~l~~---------~~v-g---------- 722 (957)
.+.+...|.|+||+|+|||||.|.|++..+. ..|.+. ..++.. .+. +
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L 423 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL 423 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHH
Confidence 3455666999999999999999999776531 111111 111110 001 0
Q ss_pred -----------------chHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcE
Q 002169 723 -----------------ESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNV 785 (957)
Q Consensus 723 -----------------~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v 785 (957)
...++.|..+++.....|.+|+|||++.-+ .-..+.+|-..|... .-
T Consensus 424 ~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhL------------Di~s~~aLe~aL~~f----~G 487 (530)
T COG0488 424 GRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHL------------DIESLEALEEALLDF----EG 487 (530)
T ss_pred HHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccC------------CHHHHHHHHHHHHhC----CC
Confidence 012223788899889999999999998543 233334444444433 33
Q ss_pred EEEEecCCCCCCChhh
Q 002169 786 TVIAATNRPDKIDPAL 801 (957)
Q Consensus 786 ~VI~aTN~~~~id~aL 801 (957)
.||++||+.+.++.-.
T Consensus 488 tvl~VSHDr~Fl~~va 503 (530)
T COG0488 488 TVLLVSHDRYFLDRVA 503 (530)
T ss_pred eEEEEeCCHHHHHhhc
Confidence 5889999887765543
No 299
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.10 E-value=1.6e-09 Score=124.97 Aligned_cols=222 Identities=17% Similarity=0.189 Sum_probs=127.8
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC--cEEEEeC-----CCccc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVKG-----PELFS 718 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~-----~~l~~ 718 (957)
..++|.+++++.+..++. ...++||+||||||||++|++|+..++. +|..+.+ .++++
T Consensus 20 ~~i~gre~vI~lll~aal---------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hhccCcHHHHHHHHHHHc---------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 457888888887766653 3577999999999999999999997653 4443322 23332
Q ss_pred ccccchHHHH--HHHHHHHHhC---CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------cCCcE
Q 002169 719 KWVGESEKAV--RSLFAKARAN---APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNV 785 (957)
Q Consensus 719 ~~vg~~~~~i--r~~f~~A~~~---~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v 785 (957)
.. +-... ..-|.....+ ...+||+|||.. +...+++.||..|+... .....
T Consensus 85 ~l---~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r-------------asp~~QsaLLeam~Er~~t~g~~~~~lp~r 148 (498)
T PRK13531 85 PL---SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK-------------AGPAILNTLLTAINERRFRNGAHEEKIPMR 148 (498)
T ss_pred cH---HHhhhhhcCchhhhcCCccccccEEeeccccc-------------CCHHHHHHHHHHHHhCeEecCCeEEeCCCc
Confidence 21 00110 1122222221 234999999974 35778888999994321 11123
Q ss_pred EEEEecCCCCC---CChhhhCCCCcceecccCCCCH-HHHHHHHHHHHhc--CCC--CCcccH-----------------
Q 002169 786 TVIAATNRPDK---IDPALLRPGRFDRLLYVGPPNE-TDREEIFRIHLRK--IPC--SSDVNI----------------- 840 (957)
Q Consensus 786 ~VI~aTN~~~~---id~aLlr~gRfd~~i~~~~P~~-~er~~Il~~~l~~--~~~--~~~~~l----------------- 840 (957)
++++|||.... ..+++.. ||-..+.+|+|+. ++-.+++...... .+. ..-+..
T Consensus 149 fiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d 226 (498)
T PRK13531 149 LLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPD 226 (498)
T ss_pred EEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCH
Confidence 45666674322 3358988 9977889999974 5557777654221 111 000111
Q ss_pred ------HHHHHH---cc---CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchHHHHHHHHHH
Q 002169 841 ------RELACL---SE---GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKF 903 (957)
Q Consensus 841 ------~~la~~---t~---g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~~~~~y~~~~~~~ 903 (957)
..+... +. ..|.|-...+++-|...|.... ...|+.+|+. .+..+....++....+.+.+
T Consensus 227 ~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~G--R~~V~p~Dv~-ll~~vL~HRl~~~~~v~~~~ 298 (498)
T PRK13531 227 HVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSG--RDAIAPIDLI-LLKDCLWHDAQSLNLLQQQL 298 (498)
T ss_pred HHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCC--CCCCCHHHHH-HhHHHhccCHHHHHHHHHHH
Confidence 112221 11 1455666666665555555554 6789999998 66555555444333333333
No 300
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.10 E-value=2.2e-09 Score=129.82 Aligned_cols=55 Identities=27% Similarity=0.419 Sum_probs=46.1
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN 707 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~ 707 (957)
+.+|..-|++++|++++++.+..++.. .++++|+||||||||++|+++|..++..
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 345677899999999999988877642 2489999999999999999999988654
No 301
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.09 E-value=3.8e-10 Score=127.58 Aligned_cols=197 Identities=22% Similarity=0.295 Sum_probs=129.0
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCCCc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPEL 716 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~~l 716 (957)
....+++++|.+...+++++.+... .+...++|++|++||||+++|++|.... ..|||.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~-----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY-----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh-----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 3445688889888877777776531 2345569999999999999999997543 569999999776
Q ss_pred ccc-------------cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---
Q 002169 717 FSK-------------WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--- 780 (957)
Q Consensus 717 ~~~-------------~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--- 780 (957)
... +.| ....-..+|+.|.++ +||+|||+.+ ....+..|++.|+...
T Consensus 142 ~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~L-------------P~~~Q~kLl~~le~g~~~r 204 (403)
T COG1221 142 SENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRL-------------PPEGQEKLLRVLEEGEYRR 204 (403)
T ss_pred CcCHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhC-------------CHhHHHHHHHHHHcCceEe
Confidence 433 223 233346788999888 9999999976 3455667888888631
Q ss_pred ------cCCcEEEEEecCCCCCCChhhhC--C---CCcceecccCCCCHHHHH----H----HHHHHHhcCCCCCcccHH
Q 002169 781 ------QRVNVTVIAATNRPDKIDPALLR--P---GRFDRLLYVGPPNETDRE----E----IFRIHLRKIPCSSDVNIR 841 (957)
Q Consensus 781 ------~~~~v~VI~aTN~~~~id~aLlr--~---gRfd~~i~~~~P~~~er~----~----Il~~~l~~~~~~~~~~l~ 841 (957)
...+|.+|+|||. .++.+++. . -|+ .+.+..|...+|. . +++...++.+...-.+..
T Consensus 205 vG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~ 280 (403)
T COG1221 205 VGGSQPRPVDVRLICATTE--DLEEAVLAGADLTRRLN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSP 280 (403)
T ss_pred cCCCCCcCCCceeeecccc--CHHHHHHhhcchhhhhc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 2347999999983 33333332 0 133 3344556665553 2 334444555544333322
Q ss_pred HH-----HHHccCCcHHHHHHHHHHHHHHHHHHh
Q 002169 842 EL-----ACLSEGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 842 ~l-----a~~t~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
+. ++...| +.++++++++.++..+....
T Consensus 281 ~a~~~L~~y~~pG-NirELkN~Ve~~~~~~~~~~ 313 (403)
T COG1221 281 EALRALLAYDWPG-NIRELKNLVERAVAQASGEG 313 (403)
T ss_pred HHHHHHHhCCCCC-cHHHHHHHHHHHHHHhcccc
Confidence 22 223345 68999999999998886443
No 302
>PRK09087 hypothetical protein; Validated
Probab=99.09 E-value=1.8e-09 Score=115.16 Aligned_cols=139 Identities=27% Similarity=0.375 Sum_probs=99.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG 408 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~ 408 (957)
...++|+||+|+|||+|+++++...+..+ ++..++.. .++..... .+|+|||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGS-----------DAANAAAE---GPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcch-----------HHHHhhhc---CeEEEECCCCCCCC-----
Confidence 45599999999999999999998766543 33222211 11122212 38999999976211
Q ss_pred chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC---chhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcCCCCCC
Q 002169 409 EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLD--REIEIAVPSPAQRLEILHALLSGMEHSL 483 (957)
Q Consensus 409 ~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~---ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~~~~~l 483 (957)
...|+.+++.+...+..++|+++..|.. ..+.+++ ||. ..+++..|+.+.|.+|++..+...+..+
T Consensus 103 -------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 -------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred -------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 1236666766655556666666655543 3577887 764 5689999999999999999999888899
Q ss_pred ChHHHHHHHHHcCC
Q 002169 484 LDSEVEYLSMATHG 497 (957)
Q Consensus 484 ~~~~l~~La~~t~g 497 (957)
+++.++.|+++..|
T Consensus 174 ~~ev~~~La~~~~r 187 (226)
T PRK09087 174 DPHVVYYLVSRMER 187 (226)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999998774
No 303
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.6e-09 Score=114.49 Aligned_cols=128 Identities=30% Similarity=0.421 Sum_probs=89.9
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcC----CC-CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc-cc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIG----TR-PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SK 719 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~----~~-~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~-~~ 719 (957)
+.++||+.+|+.|.-++. .|-..+.... .. ...++||+||+|||||+||+.+|+.++.||..-++..|. ..
T Consensus 61 ~YVIGQe~AKKvLsVAVY---NHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVY---NHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred hheecchhhhceeeeeeh---hHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 568999999998866653 2222222111 11 234599999999999999999999999999988887775 46
Q ss_pred cccchHHHH-HHHH-------HHHHhCCCeEEEEeCCchhhhhcCCCC-CCCcchHHHHHHHHHHHhcc
Q 002169 720 WVGESEKAV-RSLF-------AKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGL 779 (957)
Q Consensus 720 ~vg~~~~~i-r~~f-------~~A~~~~p~ILfiDEid~l~~~r~~~~-~~~~~~~~v~~~LL~~ld~~ 779 (957)
|+|+...++ ..++ ++|..+ |+||||||.++......+ ...-..+-++.+||..++|.
T Consensus 138 YVGEDVENillkLlqaadydV~rAerG---IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERG---IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCC---eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 999876665 3333 233333 999999999986653222 11223467888999999975
No 304
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.07 E-value=2.8e-09 Score=124.76 Aligned_cols=167 Identities=25% Similarity=0.360 Sum_probs=118.7
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHh--------ccCCeEEEEcCc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSAS--------QSAPAVVFIDEL 397 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~--------~~~p~IL~IDEi 397 (957)
.++.+-+||+||||-||||||+.+|++.|..+++||+++-.+ ...+++.++.|. ...|.+|+||||
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEI 396 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEI 396 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecc
Confidence 345567789999999999999999999999999999988533 233444443332 246999999999
Q ss_pred cccccCCcCCCchHHHHHHHHHHHHhhc--ccc---CC--------------CeEEEEecCCCCCchhhhhCCCCcceee
Q 002169 398 DAIAPARKDGGEELSQRMVATLLNLMDG--VCR---TD--------------GVLVIAATNRPDSIEPALRRPGRLDREI 458 (957)
Q Consensus 398 D~l~~~~~~~~~~~~~~i~~~Ll~~ld~--l~~---~~--------------~v~vI~ttN~~~~ld~al~r~gRfd~~I 458 (957)
|.-. ...+..++.++.. ... .. .--||++||.. --|+||.---|...|
T Consensus 397 DGa~-----------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 397 DGAP-----------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEII 463 (877)
T ss_pred cCCc-----------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEE
Confidence 8542 4455666666652 100 00 13589999864 357775433577788
Q ss_pred eecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 002169 459 EIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 515 (957)
Q Consensus 459 ~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~ 515 (957)
.|..|...-..+-|+.++...+...+...+..|++.+++ ||++-++.--..+.
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINTLQFLAS 516 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHH
Confidence 999999988888899888888888788888888887764 77766665544443
No 305
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.07 E-value=1.2e-09 Score=122.41 Aligned_cols=159 Identities=22% Similarity=0.354 Sum_probs=100.5
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCC-CeEEEEcCCCChHHHHHHHHHHHcC-------C--cEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPT-KGVLLHGPPGTGKTSLARLCAHDSG-------V--NLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~-~~vLL~GppGtGKTtLaralA~~l~-------~--~~i~i~ 361 (957)
...|.+|.|.++.++.+.-.. +.++ .|+||+|+|||||||+|++++..+. . .+..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~-------------~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTA-------------IDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHH-------------hccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 356788999999888766432 1123 5899999999999999999999883 2 111111
Q ss_pred c-ccc--------ccc---------------ccchh--HHHH---HHHHHH--HhccCCeEEEEcCccccccCCcCCCch
Q 002169 362 G-PEV--------VSQ---------------NYGES--EQAL---HEVFDS--ASQSAPAVVFIDELDAIAPARKDGGEE 410 (957)
Q Consensus 362 ~-~~l--------~~~---------------~~ge~--e~~i---~~vf~~--a~~~~p~IL~IDEiD~l~~~~~~~~~~ 410 (957)
+ .+. ... -.|.. +..+ +..|+. .......+||+||++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 1 000 000 01100 0000 001110 001113499999998873
Q ss_pred HHHHHHHHHHHHhhccc-----------cCCCeEEEEecCCCC-CchhhhhCCCCcceeeeecCCCH-HHHHHHHHHHH
Q 002169 411 LSQRMVATLLNLMDGVC-----------RTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIAVPSP-AQRLEILHALL 476 (957)
Q Consensus 411 ~~~~i~~~Ll~~ld~l~-----------~~~~v~vI~ttN~~~-~ld~al~r~gRfd~~I~i~~P~~-~~r~~Il~~~l 476 (957)
..++..|++.|+.-. ...++++|+++|+.+ .+++++.. ||...+.++.|.. ++|.+|+....
T Consensus 142 --~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 142 --DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 456677888876421 234688999998755 68889988 9998899988877 88899998743
No 306
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.07 E-value=7.1e-10 Score=132.13 Aligned_cols=31 Identities=29% Similarity=0.335 Sum_probs=27.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 4667889999999999999999999999765
No 307
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.07 E-value=9.5e-10 Score=131.04 Aligned_cols=31 Identities=35% Similarity=0.455 Sum_probs=28.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4677899999999999999999999999865
No 308
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.07 E-value=1.4e-10 Score=120.09 Aligned_cols=118 Identities=25% Similarity=0.351 Sum_probs=69.7
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------------
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------------- 706 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------------- 706 (957)
.|+||+||+.+|..+.-+... ..++||+||||||||++|+++...+.-
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 378999999999998777642 368999999999999999999976421
Q ss_pred -----------cEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHH
Q 002169 707 -----------NFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE 775 (957)
Q Consensus 707 -----------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ 775 (957)
||....-+.-....+|......-..+..|..+ |||+||+-. +...+++.|+.-
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~G---VLflDE~~e-------------f~~~vld~Lr~p 129 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRG---VLFLDELNE-------------FDRSVLDALRQP 129 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTS---EEEECETTT-------------S-HHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCC---EEEechhhh-------------cCHHHHHHHHHH
Confidence 11111110000001111111011234555555 999999974 467889999998
Q ss_pred Hhccc-----------cCCcEEEEEecC
Q 002169 776 LDGLH-----------QRVNVTVIAATN 792 (957)
Q Consensus 776 ld~~~-----------~~~~v~VI~aTN 792 (957)
|+.-. -..+.++|+|+|
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~N 157 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMN 157 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-
T ss_pred HHCCeEEEEECCceEEEecccEEEEEec
Confidence 87431 123678889888
No 309
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=2.5e-09 Score=120.58 Aligned_cols=149 Identities=18% Similarity=0.197 Sum_probs=109.5
Q ss_pred cccccCC-hHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc---------------
Q 002169 644 KWEDVGG-QREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN--------------- 707 (957)
Q Consensus 644 ~~~di~G-~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~--------------- 707 (957)
.|+.|.| ++.+++.+...+.. -+.+..+||+||+|+|||++|+++|+.+...
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4788888 99999999888752 3456678999999999999999999876321
Q ss_pred ---------EEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHH
Q 002169 708 ---------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLV 774 (957)
Q Consensus 708 ---------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~ 774 (957)
+..+... +. .-.-..+|.+.+.+. .+...|++|||+|.+ .....+.||.
T Consensus 71 ~~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-------------~~~a~NaLLK 132 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-------------TASAANSLLK 132 (329)
T ss_pred HHhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-------------CHHHHHHHHH
Confidence 2222111 00 012346677666554 234569999999976 4556788999
Q ss_pred HHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHH
Q 002169 775 ELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRI 827 (957)
Q Consensus 775 ~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~ 827 (957)
.|+. +..++++|++|+.++.+-|++++ |+ ..++|++|+.++..++++.
T Consensus 133 ~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 9995 45578888899999999999999 86 5889999999887776653
No 310
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.06 E-value=8.2e-10 Score=136.58 Aligned_cols=195 Identities=18% Similarity=0.294 Sum_probs=124.2
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS 718 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~ 718 (957)
+..|++++|.....+.+.+.+... .....+|+|+|++|||||++|++|...+ +.+|+.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 356789999999998888777542 2345679999999999999999998765 57999999976532
Q ss_pred c-----cccch-------HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc------
Q 002169 719 K-----WVGES-------EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------ 780 (957)
Q Consensus 719 ~-----~vg~~-------~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~------ 780 (957)
. ..|.. .......|+.|..+ +||||||+.+ ...++..|+..|+...
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~G---tL~Ldei~~L-------------~~~~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELADKS---SLFLDEVGDM-------------PLELQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhcCCC---eEEEechhhC-------------CHHHHHHHHHHHHhCCEEeCCC
Confidence 1 11210 01122345655544 9999999976 4556667877776421
Q ss_pred ---cCCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHHH----HHHHHHh----cCCCC----Ccc
Q 002169 781 ---QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHLR----KIPCS----SDV 838 (957)
Q Consensus 781 ---~~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~~----Il~~~l~----~~~~~----~~~ 838 (957)
...++.+|++|+..-. .+...|+|.. .+.+..|...+|.+ +++.++. +++.. ...
T Consensus 505 ~~~~~~~~RiI~~t~~~l~---~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~ 581 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLK---KMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE 581 (686)
T ss_pred CCcccceEEEEEeCCCCHH---HHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 1246899999986532 2333345543 34456677766643 3444433 33322 122
Q ss_pred cHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 839 NIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 839 ~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
.+..|.....--+.+++++++++|+..+
T Consensus 582 al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 582 TLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 2344444433336899999999998765
No 311
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.05 E-value=6.8e-10 Score=125.42 Aligned_cols=147 Identities=32% Similarity=0.420 Sum_probs=100.6
Q ss_pred cCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc--cccchH
Q 002169 648 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK--WVGESE 725 (957)
Q Consensus 648 i~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~--~vg~~~ 725 (957)
++|.++++..+..++. ...++||.||||||||++|+++|..++.+|+.+.+..-+.. .+|...
T Consensus 26 ~~g~~~~~~~~l~a~~---------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALL---------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHH---------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 6677777766655543 35779999999999999999999999999999998643321 112111
Q ss_pred HHH------------HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc----------ccCC
Q 002169 726 KAV------------RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL----------HQRV 783 (957)
Q Consensus 726 ~~i------------r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~----------~~~~ 783 (957)
-.. .-+|.... +|+|+|||++ +...+.+.|+..|+.. .-..
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInr-------------a~p~~q~aLl~~l~e~~vtv~~~~~~~~~~ 153 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVR----VILLLDEINR-------------APPEVQNALLEALEERQVTVPGLTTIRLPP 153 (329)
T ss_pred HhhhhccCCeEEEecCCcccccc----eEEEEecccc-------------CCHHHHHHHHHHHhCcEEEECCcCCcCCCC
Confidence 111 11111111 4999999984 3567888899988862 1234
Q ss_pred cEEEEEecC-----CCCCCChhhhCCCCcceecccCCCCHH-HHHHHHHHH
Q 002169 784 NVTVIAATN-----RPDKIDPALLRPGRFDRLLYVGPPNET-DREEIFRIH 828 (957)
Q Consensus 784 ~v~VI~aTN-----~~~~id~aLlr~gRfd~~i~~~~P~~~-er~~Il~~~ 828 (957)
..+||+|+| ....+.+|+++ ||...++++.|+.+ +...++...
T Consensus 154 ~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 154 PFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred CCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhC
Confidence 677888888 44567999999 99888999999544 444444433
No 312
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=6.6e-09 Score=117.74 Aligned_cols=181 Identities=19% Similarity=0.208 Sum_probs=121.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------EE-EEe---
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------LF-TVN--- 361 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~-------~i-~i~--- 361 (957)
..+++|.|.+..++.|...+... +.+..+||+||+|+|||++|+.+|+.+.+. .. ...
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~ 88 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPA 88 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCC
Confidence 35678999999999999885332 234569999999999999999999887441 10 000
Q ss_pred c-----------cccc---ccc-c--c-----hhHHHHHHHHHH----HhccCCeEEEEcCccccccCCcCCCchHHHHH
Q 002169 362 G-----------PEVV---SQN-Y--G-----ESEQALHEVFDS----ASQSAPAVVFIDELDAIAPARKDGGEELSQRM 415 (957)
Q Consensus 362 ~-----------~~l~---~~~-~--g-----e~e~~i~~vf~~----a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i 415 (957)
| +++. ... . + -.-..++.+.+. +......|++|||+|.+. ...
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~-----------~~a 157 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN-----------RNA 157 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------HHH
Confidence 1 0111 000 0 0 011233443332 223446799999999883 233
Q ss_pred HHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHc
Q 002169 416 VATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMAT 495 (957)
Q Consensus 416 ~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t 495 (957)
.+.|+..|++. ..+.++|++|+.++.+.|.+++ |+ ..+.++.|+.++..++++....... +++..+..++..+
T Consensus 158 anaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s 230 (351)
T PRK09112 158 ANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRS 230 (351)
T ss_pred HHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHc
Confidence 46688888873 4567777788889999999998 77 4699999999999999987432222 4566777788777
Q ss_pred CCCcHHH
Q 002169 496 HGFVGAD 502 (957)
Q Consensus 496 ~g~~gaD 502 (957)
.|-...-
T Consensus 231 ~G~pr~A 237 (351)
T PRK09112 231 KGSVRKA 237 (351)
T ss_pred CCCHHHH
Confidence 7655433
No 313
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.05 E-value=8.7e-10 Score=106.20 Aligned_cols=128 Identities=29% Similarity=0.447 Sum_probs=84.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCc---EEEEecccccccc--------------cchhHHHHHHHHHHHhccCCeE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVN---LFTVNGPEVVSQN--------------YGESEQALHEVFDSASQSAPAV 391 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~---~i~i~~~~l~~~~--------------~ge~e~~i~~vf~~a~~~~p~I 391 (957)
+..++|+||||||||++++.+|..+... ++.+++....... ........+.+++.+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 5689999999999999999999998775 7888876543321 1344556778888888777899
Q ss_pred EEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC-CCCchhhhhCCCCcceeeeecCC
Q 002169 392 VFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR-PDSIEPALRRPGRLDREIEIAVP 463 (957)
Q Consensus 392 L~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~-~~~ld~al~r~gRfd~~I~i~~P 463 (957)
|+|||++.+....... ..................+..+|+++|. ....+..+++ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEA-----LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHH-----HHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999886432110 0000000001111223456788999986 3445555555 88887777554
No 314
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.04 E-value=9.6e-11 Score=115.21 Aligned_cols=109 Identities=28% Similarity=0.401 Sum_probs=71.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc------cccccch---hHHHHHHHHHHHhccCCeEEEEcCccccc
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV------VSQNYGE---SEQALHEVFDSASQSAPAVVFIDELDAIA 401 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l------~~~~~ge---~e~~i~~vf~~a~~~~p~IL~IDEiD~l~ 401 (957)
+|+|+||||||||++|+.+|..++.+++.+++... .+.+.-. .+..-..+.+.+ ..+.|++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccC-
Confidence 58999999999999999999999999998887653 2222110 000000000001 14679999999866
Q ss_pred cCCcCCCchHHHHHHHHHHHHhhcc-----------ccCC------CeEEEEecCCCC----CchhhhhCCCCc
Q 002169 402 PARKDGGEELSQRMVATLLNLMDGV-----------CRTD------GVLVIAATNRPD----SIEPALRRPGRL 454 (957)
Q Consensus 402 ~~~~~~~~~~~~~i~~~Ll~~ld~l-----------~~~~------~v~vI~ttN~~~----~ld~al~r~gRf 454 (957)
...+...|+.+++.- .... ++.+|+|+|+.+ .+++++++ ||
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 245666677777652 1112 489999999998 89999999 87
No 315
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.04 E-value=1.1e-09 Score=105.45 Aligned_cols=126 Identities=34% Similarity=0.434 Sum_probs=82.7
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCc---EEEEeCCCcccc--------------cccchHHHHHHHHHHHHhCCCeE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLN---FLAVKGPELFSK--------------WVGESEKAVRSLFAKARANAPSI 742 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~---~i~v~~~~l~~~--------------~vg~~~~~ir~~f~~A~~~~p~I 742 (957)
+..++|+||||||||++++.+|..+... ++.+++...... .........+.+++.|....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4569999999999999999999998775 777777654332 12334566778899999888899
Q ss_pred EEEeCCchhhhhcCCCCCCCcchHHHHHHH--HHHHhccccCCcEEEEEecCC-CCCCChhhhCCCCcceecccCCC
Q 002169 743 IFFDEIDGLAAIRGKESDGVSVSDRVMSQL--LVELDGLHQRVNVTVIAATNR-PDKIDPALLRPGRFDRLLYVGPP 816 (957)
Q Consensus 743 LfiDEid~l~~~r~~~~~~~~~~~~v~~~L--L~~ld~~~~~~~v~VI~aTN~-~~~id~aLlr~gRfd~~i~~~~P 816 (957)
||+||++.+...... ...... ...........+..+|+++|. ....+..+.+ |++..+.++.+
T Consensus 82 iiiDei~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQE---------ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHH---------HHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 999999988543211 000000 001111123446788888886 3334445554 88877777544
No 316
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.04 E-value=3.2e-09 Score=120.48 Aligned_cols=169 Identities=18% Similarity=0.285 Sum_probs=122.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
+..+++||||+|.|||+|++|++++. +..++++...+++..++......-..-|+.-. .-.+++||+++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 56789999999999999999999876 34577787777766554443333333444443 346999999999975
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCch---hhhhCCCCcce--eeeecCCCHHHHHHHHHHHHc
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE---PALRRPGRLDR--EIEIAVPSPAQRLEILHALLS 477 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld---~al~r~gRfd~--~I~i~~P~~~~r~~Il~~~l~ 477 (957)
+. +...+|...+..+...++.+++.+-..|.++. |.|++ ||.. .+.+..|+.+.|..||+....
T Consensus 190 k~---------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 190 KE---------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred Ch---------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 43 22345666666665566655555555566544 88888 8765 578999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 478 GMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 478 ~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
..+..++++.++.++.+... +.+++...+...
T Consensus 259 ~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l 290 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLDR-NVRELEGALNRL 290 (408)
T ss_pred hcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHH
Confidence 99999999999999988654 344555444443
No 317
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.03 E-value=2.9e-09 Score=110.42 Aligned_cols=144 Identities=22% Similarity=0.287 Sum_probs=100.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCc------------------------EEEEecccccccccchhHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVN------------------------LFTVNGPEVVSQNYGESEQALHEVFDS 383 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~------------------------~i~i~~~~l~~~~~ge~e~~i~~vf~~ 383 (957)
.+..+||+||+|+|||++|++++..+-.. +..+... +.. -....++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHHH
Confidence 35679999999999999999999887432 1111110 000 112455555655
Q ss_pred Hhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeee
Q 002169 384 ASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIE 459 (957)
Q Consensus 384 a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~ 459 (957)
+.. ....|++|||+|.+.. ...+.|+..|+.. .....+|++++.+..+.+++++ |+ ..++
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~-----------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~~~ 151 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNE-----------AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QVLP 151 (188)
T ss_pred HccCcccCCeEEEEEechhhhCH-----------HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EEee
Confidence 543 3467999999998842 2345688888773 3466778888888999999998 66 3699
Q ss_pred ecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCC
Q 002169 460 IAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF 498 (957)
Q Consensus 460 i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~ 498 (957)
+..|+.++..++++.. + +++..++.++..+.|-
T Consensus 152 ~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGS 184 (188)
T ss_pred CCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCC
Confidence 9999999998888765 2 4677788888777653
No 318
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.03 E-value=2.1e-09 Score=126.73 Aligned_cols=208 Identities=22% Similarity=0.280 Sum_probs=126.9
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC------------------
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG------------------ 705 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~------------------ 705 (957)
.|+++.|++.+++.+.-.+ ....+++|+||||||||++|+++++.+.
T Consensus 190 d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 6788999999877654433 3456799999999999999999987531
Q ss_pred ----------CcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHH
Q 002169 706 ----------LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE 775 (957)
Q Consensus 706 ----------~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ 775 (957)
.||.....+......+|.........+..|..+ +|||||++.+ ...++..|++.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~G---vLfLDEi~e~-------------~~~~~~~L~~~ 318 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNG---VLFLDELPEF-------------KRSVLDALREP 318 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCCC---eEecCChhhC-------------CHHHHHHHHHH
Confidence 122211111110011111111112345566555 9999999865 45667777777
Q ss_pred Hhccc-----------cCCcEEEEEecCCC------C-----------------CCChhhhCCCCcceecccCCCCHHH-
Q 002169 776 LDGLH-----------QRVNVTVIAATNRP------D-----------------KIDPALLRPGRFDRLLYVGPPNETD- 820 (957)
Q Consensus 776 ld~~~-----------~~~~v~VI~aTN~~------~-----------------~id~aLlr~gRfd~~i~~~~P~~~e- 820 (957)
|+... ...++.+|+++|.- + .+..+|+. |||-.+.++.++..+
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKL 396 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHH
Confidence 76431 12478999999852 1 47888998 999999998765432
Q ss_pred ------------HHHHHHHHH------hcC---CCCCccc-------------HHH-H--HHHccCCcHHHHHHHHHHHH
Q 002169 821 ------------REEIFRIHL------RKI---PCSSDVN-------------IRE-L--ACLSEGCTGADISLICREAA 863 (957)
Q Consensus 821 ------------r~~Il~~~l------~~~---~~~~~~~-------------l~~-l--a~~t~g~sg~dl~~l~~eA~ 863 (957)
|.++.+... ... .+..... ..+ + +....+.|.|....+++-|.
T Consensus 397 ~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvAr 476 (499)
T TIGR00368 397 LSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVAR 476 (499)
T ss_pred hccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 223322111 111 1111111 111 1 22223578888888888888
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHH
Q 002169 864 ISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 864 ~~a~~~~~~~~~It~~d~~~al~ 886 (957)
..|-.+. ...|+.+|+.+|+.
T Consensus 477 TiAdL~g--~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 477 TIADLKE--EKNISREHLAEAIE 497 (499)
T ss_pred HHHhhcC--CCCCCHHHHHHHHh
Confidence 7776664 67899999999875
No 319
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.02 E-value=2.1e-09 Score=123.05 Aligned_cols=140 Identities=22% Similarity=0.379 Sum_probs=87.3
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-------cEEEEeCC----
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-------NFLAVKGP---- 714 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~-------~~i~v~~~---- 714 (957)
+++.+.++..+.+...+. ..++++|+||||||||++|+.+|..+.. .++.+...
T Consensus 175 ~d~~i~e~~le~l~~~L~---------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 175 NDLFIPETTIETILKRLT---------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hcccCCHHHHHHHHHHHh---------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 445555556655554442 3578999999999999999999988743 12333321
Q ss_pred Cccccc----ccc--hHHHHHHHHHHHHhC--CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhc--------
Q 002169 715 ELFSKW----VGE--SEKAVRSLFAKARAN--APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDG-------- 778 (957)
Q Consensus 715 ~l~~~~----vg~--~~~~ir~~f~~A~~~--~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~-------- 778 (957)
+++..+ +|. ....+..++..|+.. .|++||||||++... .+++..++..|+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani------------~kiFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL------------SKVFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH------------HHhhhhhhhhccccccccccc
Confidence 222221 111 011334555666653 579999999996532 3333444444431
Q ss_pred ------------cccCCcEEEEEecCCCC----CCChhhhCCCCcceecccCC
Q 002169 779 ------------LHQRVNVTVIAATNRPD----KIDPALLRPGRFDRLLYVGP 815 (957)
Q Consensus 779 ------------~~~~~~v~VI~aTN~~~----~id~aLlr~gRfd~~i~~~~ 815 (957)
+.-..++.||+|+|..+ .+|.||+| ||. .|++.+
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 22345899999999988 78999999 984 555543
No 320
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=4e-09 Score=118.49 Aligned_cols=148 Identities=18% Similarity=0.302 Sum_probs=106.1
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCC------------------------cEEEEeCCCcccccccchHHHHHHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGL------------------------NFLAVKGPELFSKWVGESEKAVRSLFA 733 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------------------~~i~v~~~~l~~~~vg~~~~~ir~~f~ 733 (957)
+.+..+||+||+|+|||++|+++|+.+.. .++.+...+- ++ .-.-..+|.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 45667999999999999999999988643 2222222100 00 113456777776
Q ss_pred HHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcce
Q 002169 734 KARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 734 ~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~ 809 (957)
.+.. +...|++|||+|.+ .....|.||..|+. +..++++|++|+.++.+.|.+++ |+.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-------------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-------------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-------------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hce-
Confidence 6543 44579999999977 45677899999995 34689999999999999999999 884
Q ss_pred ecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccC
Q 002169 810 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG 849 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g 849 (957)
.+.|++|+.++..+.+...... ..+.+...++..+.|
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 6899999999888877755321 223344566677777
No 321
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=4e-09 Score=129.27 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=28.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|+||+|+|||||+++|++..
T Consensus 21 s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 21 TATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999865
No 322
>PHA02244 ATPase-like protein
Probab=99.02 E-value=4.2e-09 Score=117.74 Aligned_cols=122 Identities=22% Similarity=0.312 Sum_probs=81.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecc----cccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP----EVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~----~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
.+.+|+|+||||||||++|+++|..++.+|+.+++. ++.+...+.....-..++... ....+|+|||++.+.+
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p- 194 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIP- 194 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCH-
Confidence 466899999999999999999999999999998852 111100000011111222222 2356999999987743
Q ss_pred CcCCCchHHHHHHHHHHHHhhc---------cccCCCeEEEEecCCC-----------CCchhhhhCCCCcceeeeecCC
Q 002169 404 RKDGGEELSQRMVATLLNLMDG---------VCRTDGVLVIAATNRP-----------DSIEPALRRPGRLDREIEIAVP 463 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~ld~---------l~~~~~v~vI~ttN~~-----------~~ld~al~r~gRfd~~I~i~~P 463 (957)
.+...|...++. +..+.++.+|+|+|++ ..++++++. ||. .|+++.|
T Consensus 195 ----------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 195 ----------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred ----------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 233345555542 2335688999999983 467899998 995 4889998
Q ss_pred CH
Q 002169 464 SP 465 (957)
Q Consensus 464 ~~ 465 (957)
+.
T Consensus 262 ~~ 263 (383)
T PHA02244 262 EK 263 (383)
T ss_pred cH
Confidence 74
No 323
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.01 E-value=5.5e-09 Score=115.65 Aligned_cols=67 Identities=31% Similarity=0.517 Sum_probs=48.4
Q ss_pred ccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCCCcccc
Q 002169 645 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFSK 719 (957)
Q Consensus 645 ~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~l~~~ 719 (957)
-+.++||.++++..--.+++.. -+.-..+++||.||||||||.+|-+||+++| .||+.++++++++.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk--------~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~ 91 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIK--------EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSS 91 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHH--------TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BT
T ss_pred cccccChHHHHHHHHHHHHHHh--------cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeec
Confidence 4678999999987765554321 1233467899999999999999999999997 79999999888554
No 324
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.00 E-value=1.4e-08 Score=111.15 Aligned_cols=188 Identities=17% Similarity=0.292 Sum_probs=116.2
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCC-cEEEE--eCCCc-----c----cc----cccchH----HHHHHHH-HHHHhCCC
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGL-NFLAV--KGPEL-----F----SK----WVGESE----KAVRSLF-AKARANAP 740 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~-~~i~v--~~~~l-----~----~~----~vg~~~----~~ir~~f-~~A~~~~p 740 (957)
-++|+||+|+||||+++.+++++.. .++.. ....+ + .. ..+... ..+...+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4889999999999999999998752 22211 11111 0 00 011111 1122222 23345677
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-c-CCcEEEEEecCCCCC---C-C---hhhhCCCCcceec
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-Q-RVNVTVIAATNRPDK---I-D---PALLRPGRFDRLL 811 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-~-~~~v~VI~aTN~~~~---i-d---~aLlr~gRfd~~i 811 (957)
.+|+|||++.+.. ..+..+ ..+-... . ...+.|+++ ..++. + + ..+.+ |+...+
T Consensus 125 ~vliiDe~~~l~~-------------~~~~~l-~~l~~~~~~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~ 187 (269)
T TIGR03015 125 ALLVVDEAQNLTP-------------ELLEEL-RMLSNFQTDNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASC 187 (269)
T ss_pred eEEEEECcccCCH-------------HHHHHH-HHHhCcccCCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeee
Confidence 8999999997631 112222 2222211 1 222333333 33332 1 1 23444 777788
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCC-----CCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 812 YVGPPNETDREEIFRIHLRKIPC-----SSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 812 ~~~~P~~~er~~Il~~~l~~~~~-----~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
.+++.+.++..+++...+...+. -.+..++.+.+.+.|+ .+.+..+|+.+...|..+. ...|+.++++.++.
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~--~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEE--KREIGGEEVREVIA 264 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHH
Confidence 99999999999999988875442 1234577888999996 5669999999999988875 56899999999988
Q ss_pred hhC
Q 002169 887 HVQ 889 (957)
Q Consensus 887 ~~~ 889 (957)
.++
T Consensus 265 ~~~ 267 (269)
T TIGR03015 265 EID 267 (269)
T ss_pred Hhh
Confidence 754
No 325
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=3.1e-09 Score=127.16 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=28.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46678899999999999999999999998764
No 326
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.00 E-value=6.9e-10 Score=109.11 Aligned_cols=109 Identities=30% Similarity=0.445 Sum_probs=72.7
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc------cccc---chHHHHHHHHHHHHhCCCeEEEEeCCchhh
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS------KWVG---ESEKAVRSLFAKARANAPSIIFFDEIDGLA 752 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~------~~vg---~~~~~ir~~f~~A~~~~p~ILfiDEid~l~ 752 (957)
+++|+||||||||++|+.+|..++.+++.+.++.... .|.- .....-..+...++ .++|++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 4899999999999999999999999999998865422 2211 00000000111111 4679999999954
Q ss_pred hhcCCCCCCCcchHHHHHHHHHHHhccc-----------cCC------cEEEEEecCCCC----CCChhhhCCCCc
Q 002169 753 AIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRV------NVTVIAATNRPD----KIDPALLRPGRF 807 (957)
Q Consensus 753 ~~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~------~v~VI~aTN~~~----~id~aLlr~gRf 807 (957)
...+++.|+..++... ... +..+|+++|..+ .+++++++ ||
T Consensus 78 ------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 4667777777777531 011 389999999998 89999999 87
No 327
>PRK13409 putative ATPase RIL; Provisional
Probab=99.00 E-value=1.5e-09 Score=131.31 Aligned_cols=57 Identities=11% Similarity=0.140 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.||++||+.+.++.. .... +...|..+....+..||++||+.+.+
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~---------~~~~---l~~~l~~l~~~~g~tviivsHD~~~~ 517 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVE---------QRLA---VAKAIRRIAEEREATALVVDHDIYMI 517 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHH---------HHHH---HHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 667888888999999999999765432 2233 33333333333366889999987653
No 328
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=1.3e-08 Score=114.12 Aligned_cols=172 Identities=14% Similarity=0.219 Sum_probs=118.5
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--------cEEEEecccc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--------NLFTVNGPEV 365 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--------~~i~i~~~~l 365 (957)
+|+++.|.+.+++.|...+... ..+..+||+||+|+|||++|+++|+.+-+ .+..+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~-----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN-----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC-----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 3678999999999988885322 23456799999999999999999987633 12223221
Q ss_pred cccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 366 VSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 366 ~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
.+..+ .-..++.+.+.+. .....|++||++|.+. ....+.|+..+++ ...++++|++|+.+
T Consensus 69 ~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----------~~a~naLLK~LEe--pp~~t~~il~~~~~ 133 (313)
T PRK05564 69 NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----------EQAQNAFLKTIEE--PPKGVFIILLCENL 133 (313)
T ss_pred cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----------HHHHHHHHHHhcC--CCCCeEEEEEeCCh
Confidence 01111 1223555555332 2345799999998873 2345678899987 45677888888889
Q ss_pred CCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcH
Q 002169 442 DSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500 (957)
Q Consensus 442 ~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~g 500 (957)
+.+.|.+++ |. ..++|..|+.++....+..... .+++..++.++..+.|-.+
T Consensus 134 ~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 134 EQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred HhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHH
Confidence 999999998 65 3589999999988777765443 3356667777777766444
No 329
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.99 E-value=5e-10 Score=113.90 Aligned_cols=136 Identities=26% Similarity=0.425 Sum_probs=88.4
Q ss_pred cCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc-----
Q 002169 648 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK----- 719 (957)
Q Consensus 648 i~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~----- 719 (957)
|+|.+...+.+.+.+... ...+..|||+|++||||+++|++|.... +.||+.|+++.+-..
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 456666666666655431 2345789999999999999999998876 469999999876332
Q ss_pred cccch-------HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCC
Q 002169 720 WVGES-------EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRV 783 (957)
Q Consensus 720 ~vg~~-------~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~ 783 (957)
..|.. ......+|+.|..+ +||||||+.| ...++..|+..|+.-. ...
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 133 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-------------PPELQAKLLRVLEEGKFTRLGSDKPVPV 133 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS--------------HHHHHHHHHHHHHSEEECCTSSSEEE-
T ss_pred hhccccccccccccccCCceeeccce---EEeecchhhh-------------HHHHHHHHHHHHhhchhccccccccccc
Confidence 11211 11124788898888 9999999976 4567778888887421 123
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceeccc
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYV 813 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~ 813 (957)
++.||++|+.+-. .+...|+|...+|+
T Consensus 134 ~~RiI~st~~~l~---~~v~~g~fr~dLy~ 160 (168)
T PF00158_consen 134 DVRIIASTSKDLE---ELVEQGRFREDLYY 160 (168)
T ss_dssp -EEEEEEESS-HH---HHHHTTSS-HHHHH
T ss_pred cceEEeecCcCHH---HHHHcCCChHHHHH
Confidence 7999999995432 45556888765554
No 330
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.98 E-value=5e-09 Score=126.00 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=28.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 29 sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 29 SLQIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46778899999999999999999999998764
No 331
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.98 E-value=4.9e-09 Score=125.25 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46778899999999999999999999998753
No 332
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.98 E-value=7e-09 Score=127.28 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=28.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|.||+|+|||||+++|++..
T Consensus 23 s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4678899999999999999999999999875
No 333
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.97 E-value=1.8e-09 Score=127.07 Aligned_cols=255 Identities=22% Similarity=0.292 Sum_probs=147.9
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccc-
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWV- 721 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~v- 721 (957)
.+++|.....+.+.+.+.. + ......++++|++||||+++|+++.... +.+|+.+++..+...++
T Consensus 139 ~~lig~s~~~~~l~~~i~~----------~-a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~ 207 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEK----------I-APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLE 207 (445)
T ss_pred cceeecCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHH
Confidence 3455665555555554432 1 1234669999999999999999998765 46899999987633211
Q ss_pred ----cc----h---HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------c
Q 002169 722 ----GE----S---EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------Q 781 (957)
Q Consensus 722 ----g~----~---~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~ 781 (957)
|. . .......|..|.++ +||||||+.+ ...++..|+..++... .
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~~a~~g---tl~l~~i~~l-------------~~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 208 SELFGYEKGAFTGAVKQTLGKIEYAHGG---TLFLDEIGDL-------------PLNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHhcCCCCCCcCCCccCCCCceeECCCC---EEEEechhhC-------------CHHHHHHHHHHHhhCeEEeCCCCcee
Confidence 10 0 01111233444433 9999999976 3456667777776421 1
Q ss_pred CCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHHH----HHHHHH----hcCCCC----CcccHHH
Q 002169 782 RVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDREE----IFRIHL----RKIPCS----SDVNIRE 842 (957)
Q Consensus 782 ~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~~----Il~~~l----~~~~~~----~~~~l~~ 842 (957)
..++.+|++|+..-. .+...|+|.. .+.+..|...+|.+ +++.++ .+++.. ....+..
T Consensus 272 ~~~~rii~~~~~~l~---~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 348 (445)
T TIGR02915 272 PVDVRIVCATNQDLK---RMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRA 348 (445)
T ss_pred eeceEEEEecCCCHH---HHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 136889999986522 2222233332 34455666666653 333333 322221 1223444
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh--hCCCchHHHHHHHHHHHHHhcCchhhhhccccc
Q 002169 843 LACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRH--VQPSEIHSYKELSAKFQRLVHSNAEADESGYQL 920 (957)
Q Consensus 843 la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~--~~p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~ 920 (957)
|.....--+.+++++++++|+..+. ...|+.+++...... ..+.. ..+....+.+++.++........++..
T Consensus 349 L~~~~wpgNvreL~~~i~~a~~~~~-----~~~i~~~~l~~~~~~~~~~~~~-~~l~~~~~~~E~~~i~~al~~~~gn~~ 422 (445)
T TIGR02915 349 LEAHAWPGNVRELENKVKRAVIMAE-----GNQITAEDLGLDARERAETPLE-VNLREVRERAEREAVRKAIARVDGNIA 422 (445)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhCC-----CCcccHHHcCCccccccccccc-cCHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 4444433368999999999887542 345666665310000 01111 022233345677777777777777777
Q ss_pred ccchhhh---hhhhhccCC
Q 002169 921 RPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 921 ~~~~~~g---~~L~~~~k~ 936 (957)
+.++..| .+||.++|.
T Consensus 423 ~aA~~Lgisr~tl~rkl~~ 441 (445)
T TIGR02915 423 RAAELLGITRPTLYDLMKK 441 (445)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 7777776 789999875
No 334
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.97 E-value=2.8e-08 Score=108.23 Aligned_cols=190 Identities=20% Similarity=0.251 Sum_probs=124.1
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHh---------CCcEEEEeCCCcccc--------------c-ccc-hHHHHHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSK--------------W-VGE-SEKAVRSLF 732 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~---------~~~~i~v~~~~l~~~--------------~-vg~-~~~~ir~~f 732 (957)
....++||+|++|.|||++++.++... ..|++.+.++.--+. + ... ..+....++
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~ 138 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVL 138 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHH
Confidence 345679999999999999999998654 247777776543111 1 011 122223445
Q ss_pred HHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC----CCCChhhhCCCCcc
Q 002169 733 AKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP----DKIDPALLRPGRFD 808 (957)
Q Consensus 733 ~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~----~~id~aLlr~gRfd 808 (957)
...+..++.+|+|||+|.++... .+-..++++.|..+...-++-+|++.... -.-|+.+.+ ||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs----------~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~ 206 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGS----------YRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE 206 (302)
T ss_pred HHHHHcCCcEEEeechHHHhccc----------HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC
Confidence 56666778899999999976432 12233455555555444455566554321 224788888 996
Q ss_pred eecccCCCCHH-HHHHHHHHHHhcCCCCCcc--c----HHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 002169 809 RLLYVGPPNET-DREEIFRIHLRKIPCSSDV--N----IRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHL 881 (957)
Q Consensus 809 ~~i~~~~P~~~-er~~Il~~~l~~~~~~~~~--~----l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~ 881 (957)
.+.+|.-... +...++..+-..+++.... . ...+-..++|. .+++..+++.|+..|++.. ...||.+.+
T Consensus 207 -~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~-iG~l~~ll~~aA~~AI~sG--~E~It~~~l 282 (302)
T PF05621_consen 207 -PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL-IGELSRLLNAAAIAAIRSG--EERITREIL 282 (302)
T ss_pred -CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHhcC--CceecHHHH
Confidence 6666666553 5667777777777665322 2 24556678884 5589999999999999886 678888887
Q ss_pred HH
Q 002169 882 KT 883 (957)
Q Consensus 882 ~~ 883 (957)
..
T Consensus 283 ~~ 284 (302)
T PF05621_consen 283 DK 284 (302)
T ss_pred hh
Confidence 64
No 335
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.97 E-value=3.8e-09 Score=126.17 Aligned_cols=31 Identities=23% Similarity=0.405 Sum_probs=27.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3667889999999999999999999999765
No 336
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.96 E-value=4.7e-09 Score=125.71 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=27.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++..
T Consensus 25 s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 3667889999999999999999999999765
No 337
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.96 E-value=5.7e-09 Score=123.23 Aligned_cols=234 Identities=22% Similarity=0.307 Sum_probs=142.4
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccc-----cchH-------HHHHHHHHHHHhCCCeEE
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWV-----GESE-------KAVRSLFAKARANAPSII 743 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~v-----g~~~-------~~ir~~f~~A~~~~p~IL 743 (957)
....++++|++||||+++|+++...+ +.+|+.+++..+...+. |... ......+..|.. .+|
T Consensus 165 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~---gtl 241 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANE---GTL 241 (457)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCC---CEE
Confidence 34569999999999999999998764 57999999987633211 1000 000123344433 399
Q ss_pred EEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCCCCChhhhCCCCcce-----
Q 002169 744 FFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPDKIDPALLRPGRFDR----- 809 (957)
Q Consensus 744 fiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~~id~aLlr~gRfd~----- 809 (957)
|||||+.+ ...++..|+..++... ...++.||++||..-. .+.+.|+|..
T Consensus 242 ~ld~i~~l-------------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~---~~~~~g~~~~~l~~~ 305 (457)
T PRK11361 242 LLDEIGEM-------------PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQ---AMVKEGTFREDLFYR 305 (457)
T ss_pred EEechhhC-------------CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHH---HHHHcCCchHHHHHH
Confidence 99999976 3445667777776421 1135889999986532 4445566654
Q ss_pred --ecccCCCCHHHHHH----HHHHHHhc----CCCC-Cccc---HHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 810 --LLYVGPPNETDREE----IFRIHLRK----IPCS-SDVN---IRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 810 --~i~~~~P~~~er~~----Il~~~l~~----~~~~-~~~~---l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.+.+..|...+|.+ +++.++.+ .+.. .... +..|.....--+.+++++++++|+..+ +...
T Consensus 306 l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~-----~~~~ 380 (457)
T PRK11361 306 LNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN-----SGPI 380 (457)
T ss_pred hccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC-----CCCc
Confidence 34456677666542 33333332 2211 1222 334444433336899999999988654 2446
Q ss_pred CCHHHHHHHHHhhC--C--C-----chHHHHHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 876 ITMQHLKTAIRHVQ--P--S-----EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 876 It~~d~~~al~~~~--p--~-----~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
|+.+|+...+.... + . ....+....+.+++.++........++..+.++..| .+||.++|.
T Consensus 381 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~E~~~i~~al~~~~gn~~~aA~~LGisr~tL~rkl~~ 453 (457)
T PRK11361 381 IFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYKLQE 453 (457)
T ss_pred ccHHHChHhhhcccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 77778765442110 0 0 001233334567777777777777778888877777 889999875
No 338
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=1e-08 Score=123.39 Aligned_cols=225 Identities=12% Similarity=0.150 Sum_probs=132.8
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEE-EeCCC-
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLA-VKGPE- 715 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~-v~~~~- 715 (957)
....+..+++++|+++.++.++.++... .++..+.+-++|+|||||||||+++++|++++..++. ++...
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 3456778899999999999888776431 1122334459999999999999999999998876544 11110
Q ss_pred -----c----------ccccccchHHHHHHHHHHHHh----------CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 716 -----L----------FSKWVGESEKAVRSLFAKARA----------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 716 -----l----------~~~~vg~~~~~ir~~f~~A~~----------~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
. +..+ ......++.++..|.. ....||||||++.+... ....+.
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r----------~~~~lq 216 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR----------DTRALH 216 (637)
T ss_pred cccccccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh----------hHHHHH
Confidence 0 0011 1233445666666642 34579999999876421 112333
Q ss_pred HHHH-HHhccccCCcEEEEEecCC-CC--------------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCC
Q 002169 771 QLLV-ELDGLHQRVNVTVIAATNR-PD--------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPC 834 (957)
Q Consensus 771 ~LL~-~ld~~~~~~~v~VI~aTN~-~~--------------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~ 834 (957)
.+|. ... ....+.+|++++. +. .+.++++...|+ .+|.|.+.......+.|+..+.....
T Consensus 217 ~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~ 292 (637)
T TIGR00602 217 EILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAK 292 (637)
T ss_pred HHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhh
Confidence 4444 221 1234445554442 11 134677753354 37899999999977777777754321
Q ss_pred --C------CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHH-----hcCCCCCCHHHHHHHHHhhC
Q 002169 835 --S------SDVNIRELACLSEGCTGADISLICREAAISAIEE-----NLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 835 --~------~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~-----~~~~~~It~~d~~~al~~~~ 889 (957)
. ....+..++....| |++.+++..-..+... ......++..|...+..+..
T Consensus 293 ~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~ 356 (637)
T TIGR00602 293 KNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGK 356 (637)
T ss_pred ccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCC
Confidence 1 12345666666666 8888877554443322 11233566666665555443
No 339
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=4.1e-09 Score=126.84 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=28.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|.||+|+|||||++++++.+
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999865
No 340
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.96 E-value=9e-09 Score=122.99 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++..
T Consensus 24 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 24 SFDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3677889999999999999999999999764
No 341
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=2e-08 Score=114.43 Aligned_cols=177 Identities=22% Similarity=0.306 Sum_probs=118.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcE-------------EE
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNL-------------FT 359 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~-------------i~ 359 (957)
.++++|.|.+..++.|.+.+... +.+..+||+||+|+||+++|.++|+.+-+.- ..
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~ 84 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA 84 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence 45678999999999999885432 3355699999999999999999998762210 00
Q ss_pred Ee--c-----------ccccccc-----cc------hhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchH
Q 002169 360 VN--G-----------PEVVSQN-----YG------ESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEEL 411 (957)
Q Consensus 360 i~--~-----------~~l~~~~-----~g------e~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~ 411 (957)
+. | +++.--. .+ -.-..+|.+.+.+. ...+.|++|||+|.+.
T Consensus 85 ~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~---------- 154 (365)
T PRK07471 85 IDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN---------- 154 (365)
T ss_pred CCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC----------
Confidence 00 0 0110000 00 01223555554332 3457899999999873
Q ss_pred HHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHH
Q 002169 412 SQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYL 491 (957)
Q Consensus 412 ~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~L 491 (957)
....+.|+..+++. ..++++|++|+.++.+.+.+++ |+ ..+.++.|+.++..+++..... ...+..+..+
T Consensus 155 -~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~----~~~~~~~~~l 224 (365)
T PRK07471 155 -ANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGP----DLPDDPRAAL 224 (365)
T ss_pred -HHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhcc----cCCHHHHHHH
Confidence 34556788888763 4567888999999999999988 76 4589999999999888876532 1233334566
Q ss_pred HHHcCCCcH
Q 002169 492 SMATHGFVG 500 (957)
Q Consensus 492 a~~t~g~~g 500 (957)
+..+.|-.+
T Consensus 225 ~~~s~Gsp~ 233 (365)
T PRK07471 225 AALAEGSVG 233 (365)
T ss_pred HHHcCCCHH
Confidence 666666544
No 342
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.95 E-value=1.5e-08 Score=115.16 Aligned_cols=194 Identities=16% Similarity=0.251 Sum_probs=131.5
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhC-----CcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~-----~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
....++||||.|.|||.|++|++++.. ..++.+...+++..++......-.+-|++-. +-.+++||+|+.+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 456699999999999999999998762 3456666655554444332222233455444 345999999998854
Q ss_pred hcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC---CChhhhCCCCcce--ecccCCCCHHHHHHHHHHH
Q 002169 754 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK---IDPALLRPGRFDR--LLYVGPPNETDREEIFRIH 828 (957)
Q Consensus 754 ~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~---id~aLlr~gRfd~--~i~~~~P~~~er~~Il~~~ 828 (957)
. ++...++...+..+...++.+|+.+-..|.. +.+.|.+ ||.. .+.+.+|+.+.|..|++..
T Consensus 190 k-----------~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 190 K-----------ERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred C-----------hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHH
Confidence 3 2234455555555555555455554455554 4688888 8754 6778999999999999998
Q ss_pred HhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 829 LRKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 829 l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
....++.- +.-...+|..... +.+++..+++.....+.... ..||...+.++++.....
T Consensus 257 a~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~---~~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 257 AEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTK---RAITIDLVKEILKDLLRA 316 (408)
T ss_pred HHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcC---ccCcHHHHHHHHHHhhcc
Confidence 87766653 3346667777774 78999999988777776553 367777777776665443
No 343
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.94 E-value=9.1e-09 Score=123.16 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=27.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|.||+|+|||||++++++.+
T Consensus 31 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3667889999999999999999999999765
No 344
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.94 E-value=5e-09 Score=128.19 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.+|++||+.+.++. ....+++..|..+....+..||++||+.+.+
T Consensus 471 Rv~iAraL~~~p~llllDEPts~LD~------------~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v 527 (623)
T PRK10261 471 RICIARALALNPKVIIADEAVSALDV------------SIRGQIINLLLDLQRDFGIAYLFISHDMAVV 527 (623)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCH------------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 66677888889999999999866433 3334455555544334467899999987653
No 345
>PRK04132 replication factor C small subunit; Provisional
Probab=98.93 E-value=1.1e-08 Score=125.99 Aligned_cols=153 Identities=15% Similarity=0.174 Sum_probs=118.9
Q ss_pred CCeEEEEc--CCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHHHHHHHHHHHhcc------CCeEEEEc
Q 002169 329 TKGVLLHG--PPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQS------APAVVFID 395 (957)
Q Consensus 329 ~~~vLL~G--ppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~------~p~IL~ID 395 (957)
+-+-+..| |++.||||+|+++|+++ +.+++++|+++-.+. ..++.+++.+... ...|+|||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 33445568 99999999999999997 567999999885332 2455555443322 23699999
Q ss_pred CccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHH
Q 002169 396 ELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHAL 475 (957)
Q Consensus 396 EiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~ 475 (957)
|+|.+.. ...+.|+..|+.. .+++.+|++||.+..+.+++++ |+ ..+.|..|+.++....++..
T Consensus 638 EaD~Lt~-----------~AQnALLk~lEep--~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 638 EADALTQ-----------DAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred CcccCCH-----------HHHHHHHHHhhCC--CCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 9999842 3456788999874 4578999999999999999998 75 45899999999999999998
Q ss_pred HcCCCCCCChHHHHHHHHHcCCCcHHHH
Q 002169 476 LSGMEHSLLDSEVEYLSMATHGFVGADL 503 (957)
Q Consensus 476 l~~~~~~l~~~~l~~La~~t~g~~gaDi 503 (957)
+.+.+..+++..+..++..++|-...-|
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 8877777889999999999888544333
No 346
>PRK15115 response regulator GlrR; Provisional
Probab=98.92 E-value=9.1e-09 Score=121.07 Aligned_cols=233 Identities=18% Similarity=0.261 Sum_probs=143.0
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccccc-----ch-------HHHHHHHHHHHHhCCCeEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVG-----ES-------EKAVRSLFAKARANAPSIIF 744 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg-----~~-------~~~ir~~f~~A~~~~p~ILf 744 (957)
...++++|++|||||++|+++.... +.+|+.+++..+-..... .. .......++.|.. .+||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~---gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG---GTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCC---CEEE
Confidence 4569999999999999999998875 479999999876322111 00 0001112333333 3999
Q ss_pred EeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCCCCChhhhCCCCcce------
Q 002169 745 FDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPDKIDPALLRPGRFDR------ 809 (957)
Q Consensus 745 iDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~~id~aLlr~gRfd~------ 809 (957)
|||||.+ ....+..|+..++... ...++.+|++|+.. +... ...|+|..
T Consensus 234 l~~i~~l-------------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~-~~~~~f~~~l~~~l 297 (444)
T PRK15115 234 LDEIGDM-------------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKA-MARGEFREDLYYRL 297 (444)
T ss_pred EEccccC-------------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHH-HHcCCccHHHHHhh
Confidence 9999976 3445566777776421 11268899999854 3333 33466643
Q ss_pred -ecccCCCCHHHHH----HHHHHHHhc----CCC----CCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002169 810 -LLYVGPPNETDRE----EIFRIHLRK----IPC----SSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRI 876 (957)
Q Consensus 810 -~i~~~~P~~~er~----~Il~~~l~~----~~~----~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~I 876 (957)
.+.+..|...+|. .+++.++.+ .+. .....+..|......-+.++++++++.|+..+ +...|
T Consensus 298 ~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~-----~~~~i 372 (444)
T PRK15115 298 NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT-----SSPVI 372 (444)
T ss_pred ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC-----CCCcc
Confidence 2334566666664 233444432 221 12233455555553337899999999887653 24467
Q ss_pred CHHHHHHHHHhhCCCchHHHHHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCCc
Q 002169 877 TMQHLKTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKSI 937 (957)
Q Consensus 877 t~~d~~~al~~~~p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~~ 937 (957)
+.+++...+... +.....+....+.+++.++........++..+.++..| .+||.++|..
T Consensus 373 ~~~~l~~~~~~~-~~~~~~~~~~~~~~E~~~i~~al~~~~gn~~~aA~~Lgisr~tL~rkl~~~ 435 (444)
T PRK15115 373 SDALVEQALEGE-NTALPTFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRH 435 (444)
T ss_pred Chhhhhhhhccc-ccccccHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 777776544311 11001122223567788888888888888888888887 8899999863
No 347
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.92 E-value=7.6e-09 Score=124.23 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=28.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|.||+|+|||||++++++..
T Consensus 20 s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 20 SFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3667889999999999999999999999974
No 348
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.92 E-value=6.7e-09 Score=123.12 Aligned_cols=256 Identities=20% Similarity=0.314 Sum_probs=152.0
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccc-
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWV- 721 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~v- 721 (957)
.+++|.....+.+.+.+.. . ......+++.|++|||||++|++|.... +.+|+.++|..+-..+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~----------~-~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~ 206 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGR----------L-SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIE 206 (469)
T ss_pred ccceecCHHHHHHHHHHHH----------H-hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHH
Confidence 4566766666555554431 1 1335569999999999999999999876 46999999987632211
Q ss_pred ----cchH-------HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------c
Q 002169 722 ----GESE-------KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------Q 781 (957)
Q Consensus 722 ----g~~~-------~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~ 781 (957)
|... ......|+.|..+ .|||||++.+ ....+..|+..++... .
T Consensus 207 ~~lfg~~~g~~~~~~~~~~g~~~~a~~G---tl~l~~i~~l-------------~~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 207 SELFGHEKGAFTGANTIRQGRFEQADGG---TLFLDEIGDM-------------PLDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred HHhcCCCCCCCCCCCcCCCCCeeECCCC---EEEEeccccC-------------CHHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 1000 0001123344333 8999999976 3455567777776421 1
Q ss_pred CCcEEEEEecCCCC-------CCChhhhCCCCcceecccCCCCHHHHH----HHHHHHHh----cCCCC----CcccHHH
Q 002169 782 RVNVTVIAATNRPD-------KIDPALLRPGRFDRLLYVGPPNETDRE----EIFRIHLR----KIPCS----SDVNIRE 842 (957)
Q Consensus 782 ~~~v~VI~aTN~~~-------~id~aLlr~gRfd~~i~~~~P~~~er~----~Il~~~l~----~~~~~----~~~~l~~ 842 (957)
..++.+|++|+..- .+.+.|.. ||. .+.+..|...+|. .+++.++. +++.. ....+..
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 23678999998642 23344444 442 2344445554443 34444443 22221 1222444
Q ss_pred HHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC-C--------C-----------------chHHH
Q 002169 843 LACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ-P--------S-----------------EIHSY 896 (957)
Q Consensus 843 la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~-p--------~-----------------~~~~y 896 (957)
|.....--+.+++++++++++..+- ...|+.+|+...+.... + . ....+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~~-----~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 422 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMAA-----GQEVLIQDLPGELFESTVPESTSQMQPDSWATLLAQWADRALRSGHQNLL 422 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhCC-----CCcccHHHCcHhhhccccccccccccccccccccccccccccccccchhh
Confidence 4444433368999999999887652 34567777653332110 0 0 01123
Q ss_pred HHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 897 KELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 897 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
....+.+++.++........++..+.++..| .+||.++|.
T Consensus 423 ~~~l~~~E~~~i~~aL~~~~gn~~~aA~~Lgisr~tL~rkl~~ 465 (469)
T PRK10923 423 SEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKE 465 (469)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 3344667888888888888888888888887 889999875
No 349
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.92 E-value=8.7e-09 Score=106.03 Aligned_cols=176 Identities=17% Similarity=0.217 Sum_probs=116.7
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-CC----cEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-GV----NLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-~~----~~i~i~~~~l~ 366 (957)
+..+.+|+|.++.++.+.-+..-. .-.+++|.|||||||||-+.++|+++ |. -+.++|+++-.
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~g------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEG------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcC------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 445789999999999988774222 23479999999999999999999876 42 35778877643
Q ss_pred ccccchhHHHHHHHHHHHhccC---CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSA---PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~---p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
+- .-...+++..-+.-.... -.|+++||+|++.. .....|...|+-+.. ...+..++|..+.
T Consensus 91 GI--DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-----------gAQQAlRRtMEiyS~--ttRFalaCN~s~K 155 (333)
T KOG0991|consen 91 GI--DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-----------GAQQALRRTMEIYSN--TTRFALACNQSEK 155 (333)
T ss_pred cc--HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh-----------HHHHHHHHHHHHHcc--cchhhhhhcchhh
Confidence 32 122333333323222222 25999999998853 233456666766544 3467888998888
Q ss_pred chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 444 ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
|-+.+.+ |.. .+.+...+..+...-+....+......++..++.+.--.+|
T Consensus 156 IiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 156 IIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred hhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 8877777 442 25566667777666666666666666677777777665555
No 350
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.90 E-value=4.8e-09 Score=118.57 Aligned_cols=135 Identities=24% Similarity=0.309 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc--ccchhHHHHH----HHHHHHhc-cCC---eEEEEcC
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ--NYGESEQALH----EVFDSASQ-SAP---AVVFIDE 396 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~--~~ge~e~~i~----~vf~~a~~-~~p---~IL~IDE 396 (957)
..++++||.||||||||++|+.+|..++.+|+.|.|..-... -.|....... ..|..... .-. +|+++||
T Consensus 41 ~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DE 120 (329)
T COG0714 41 LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDE 120 (329)
T ss_pred HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEec
Confidence 347899999999999999999999999999999998643221 1122111111 00100000 001 4999999
Q ss_pred ccccccCCcCCCchHHHHHHHHHHHHhhc----------cccCCCeEEEEecCC-----CCCchhhhhCCCCcceeeeec
Q 002169 397 LDAIAPARKDGGEELSQRMVATLLNLMDG----------VCRTDGVLVIAATNR-----PDSIEPALRRPGRLDREIEIA 461 (957)
Q Consensus 397 iD~l~~~~~~~~~~~~~~i~~~Ll~~ld~----------l~~~~~v~vI~ttN~-----~~~ld~al~r~gRfd~~I~i~ 461 (957)
|+... ..+.+.|+..|+. +.-...+++|+|.|+ ...+++++++ ||...+.++
T Consensus 121 Inra~-----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~ 187 (329)
T COG0714 121 INRAP-----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVD 187 (329)
T ss_pred cccCC-----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecC
Confidence 98763 3566778888877 223356888888894 4468899999 997779999
Q ss_pred CCCH-HHHHHHHHH
Q 002169 462 VPSP-AQRLEILHA 474 (957)
Q Consensus 462 ~P~~-~~r~~Il~~ 474 (957)
+|+. .+...++..
T Consensus 188 yp~~~~e~~~i~~~ 201 (329)
T COG0714 188 YPDSEEEERIILAR 201 (329)
T ss_pred CCCchHHHHHHHHh
Confidence 9944 444444443
No 351
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.90 E-value=3.9e-08 Score=104.19 Aligned_cols=128 Identities=22% Similarity=0.305 Sum_probs=80.0
Q ss_pred CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC-------------CCCCChhhhCCCC
Q 002169 740 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR-------------PDKIDPALLRPGR 806 (957)
Q Consensus 740 p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~-------------~~~id~aLlr~gR 806 (957)
|.+|||||+|.|- -+.+.-|-..++. .---+||+|||+ |.-+.+.|+. |
T Consensus 297 PGVLFIDEVhMLD-------------iEcFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD--R 358 (456)
T KOG1942|consen 297 PGVLFIDEVHMLD-------------IECFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--R 358 (456)
T ss_pred CcceEeeehhhhh-------------hHHHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--h
Confidence 7799999999661 2233333334442 223467888885 4457888887 7
Q ss_pred cceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 807 FDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 807 fd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
+ .+|..-+++.++.++|+++.....++.- +..+..|+.....-|-|-...++.-|.+.|... ....|..+|++++-
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~--g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTN--GRKEISVEDVEEVT 435 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHc--CCceeecccHHHHH
Confidence 6 4667778888999999998887666553 334566666555444444444444444555433 35578888887765
Q ss_pred Hhh
Q 002169 886 RHV 888 (957)
Q Consensus 886 ~~~ 888 (957)
.-+
T Consensus 436 ~Lf 438 (456)
T KOG1942|consen 436 ELF 438 (456)
T ss_pred HHH
Confidence 443
No 352
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.90 E-value=9.8e-09 Score=121.45 Aligned_cols=255 Identities=21% Similarity=0.301 Sum_probs=148.5
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccc--
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWV-- 721 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~v-- 721 (957)
.++|.....+.+.+.+... ......+++.|++||||+++|+++.... +.+|+.+++..+...+.
T Consensus 135 ~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~ 203 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIES 203 (463)
T ss_pred ceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH
Confidence 4566666655555544321 1234569999999999999999998775 56999999987632211
Q ss_pred ---cc----hHHH---HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cC
Q 002169 722 ---GE----SEKA---VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QR 782 (957)
Q Consensus 722 ---g~----~~~~---ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~ 782 (957)
|. +... ....+..|. ..+||||||+.+. ..++..|+..++... ..
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~l~ei~~l~-------------~~~q~~ll~~l~~~~~~~~~~~~~~~ 267 (463)
T TIGR01818 204 ELFGHEKGAFTGANTRRQGRFEQAD---GGTLFLDEIGDMP-------------LDAQTRLLRVLADGEFYRVGGRTPIK 267 (463)
T ss_pred HhcCCCCCCCCCcccCCCCcEEECC---CCeEEEEchhhCC-------------HHHHHHHHHHHhcCcEEECCCCceee
Confidence 10 0000 011233332 3489999999763 344566777776321 12
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcce---------ecccCCCC--HHHHHHHHHHHHhc----CCCC-Cccc---HHHH
Q 002169 783 VNVTVIAATNRPDKIDPALLRPGRFDR---------LLYVGPPN--ETDREEIFRIHLRK----IPCS-SDVN---IREL 843 (957)
Q Consensus 783 ~~v~VI~aTN~~~~id~aLlr~gRfd~---------~i~~~~P~--~~er~~Il~~~l~~----~~~~-~~~~---l~~l 843 (957)
.++.||++|+..-. .+.+.|+|+. .|++|+.. .++...+++.++.. .+.. ..+. +..|
T Consensus 268 ~~~rii~~~~~~l~---~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (463)
T TIGR01818 268 VDVRIVAATHQNLE---ALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERL 344 (463)
T ss_pred eeeEEEEeCCCCHH---HHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 36789999986532 3333344431 44444443 23444455544432 2211 1222 3333
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC-----C-C---------------------chHHH
Q 002169 844 ACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ-----P-S---------------------EIHSY 896 (957)
Q Consensus 844 a~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~-----p-~---------------------~~~~y 896 (957)
.....--+.++|++++++|+..+. ...|+.+|+...+.... + . ....|
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~~-----~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMAS-----GDEVLVSDLPAELALTGRPASAPDSDGQDSWDEALEAWAKQALSRGEQGLL 419 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhCC-----CCcccHHhchHHHhccccccccccccccccccccccccccccccccccchH
Confidence 333222257999999999887653 34577777765442210 0 0 01133
Q ss_pred HHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 897 KELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 897 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
....+.+++.++........++..+.++..| .+||.++|.
T Consensus 420 ~~~l~~~E~~~i~~al~~~~gn~~~aA~~Lgisr~tL~rkl~~ 462 (463)
T TIGR01818 420 DRALPEFERPLLEAALQHTRGHKQEAAALLGWGRNTLTRKLKE 462 (463)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHh
Confidence 4445677888888788777888888877777 889999875
No 353
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.89 E-value=4.4e-09 Score=116.02 Aligned_cols=55 Identities=24% Similarity=0.286 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
|-.+++|....|.+|++||+.+-+ ...+..|++..+..+....+...++++|+..
T Consensus 434 RIAIARAliLkP~~i~LDEPTSAL------------D~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~ 488 (534)
T COG4172 434 RIAIARALILKPELILLDEPTSAL------------DRSVQAQVLDLLRDLQQKHGLSYLFISHDLA 488 (534)
T ss_pred HHHHHHHHhcCCcEEEecCCchHh------------hHHHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence 667888888999999999998654 3456667777777776777888999999654
No 354
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.89 E-value=9.8e-08 Score=99.22 Aligned_cols=192 Identities=20% Similarity=0.265 Sum_probs=131.3
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVS 367 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~ 367 (957)
....+.+|.|++.+++.|.+--... ..-.|..+|||+|.-|||||+|+||+-++. +..+++|+..++..
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F--------~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~ 126 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQF--------AEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT 126 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHH--------HcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh
Confidence 3456788999999999886653222 223467899999999999999999998776 55688888777643
Q ss_pred cccchhHHHHHHHHHHHhcc-CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--ccCCCeEEEEecCCCCCc
Q 002169 368 QNYGESEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~~~~~v~vI~ttN~~~~l 444 (957)
+-.+++..+.. ..-|||.|++-.= .++ .....|-..|++- .+..+|+|.+|+|+-+.+
T Consensus 127 ---------Lp~l~~~Lr~~~~kFIlFcDDLSFe------~gd----~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl 187 (287)
T COG2607 127 ---------LPDLVELLRARPEKFILFCDDLSFE------EGD----DAYKALKSALEGGVEGRPANVLFYATSNRRHLL 187 (287)
T ss_pred ---------HHHHHHHHhcCCceEEEEecCCCCC------CCc----hHHHHHHHHhcCCcccCCCeEEEEEecCCcccc
Confidence 33445544433 2469999996311 111 1223455666663 345789999999996655
Q ss_pred hhhh--------------------hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHH----HHcCCCcH
Q 002169 445 EPAL--------------------RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLS----MATHGFVG 500 (957)
Q Consensus 445 d~al--------------------~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La----~~t~g~~g 500 (957)
+..+ .=..||.-.+.|..++.++-..|++.+++..++.++++.++.-| ....|-+|
T Consensus 188 ~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSG 267 (287)
T COG2607 188 PEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSG 267 (287)
T ss_pred cHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcc
Confidence 5221 11128888899999999999999999999999888776554433 33455566
Q ss_pred HHHHHHHHH
Q 002169 501 ADLAALCNE 509 (957)
Q Consensus 501 aDi~~l~~~ 509 (957)
+--.+.++.
T Consensus 268 R~A~QF~~~ 276 (287)
T COG2607 268 RVAWQFIRD 276 (287)
T ss_pred HhHHHHHHH
Confidence 655554443
No 355
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.89 E-value=7.2e-09 Score=105.76 Aligned_cols=114 Identities=27% Similarity=0.440 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCC----cEEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGV----NLFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDA 399 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~----~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~ 399 (957)
|-..++|+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..++..+. .....||||||+|.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4457899999999999999999999995 9999999988761 111222222222211 11123999999999
Q ss_pred cccCCcCCCchHHHHHHHHHHHHhhcc---------ccCCCeEEEEecCCCCC
Q 002169 400 IAPARKDGGEELSQRMVATLLNLMDGV---------CRTDGVLVIAATNRPDS 443 (957)
Q Consensus 400 l~~~~~~~~~~~~~~i~~~Ll~~ld~l---------~~~~~v~vI~ttN~~~~ 443 (957)
+.+....+.+.....+...|+..|++- -...++++|+|+|--..
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 988633333444557788899999763 12357899999987543
No 356
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.89 E-value=2.4e-08 Score=107.66 Aligned_cols=189 Identities=19% Similarity=0.159 Sum_probs=123.8
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc--E----EEEeC
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN--F----LAVKG 713 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~--~----i~v~~ 713 (957)
.+.-.++|+++++++...+.+... ...-.++|+|||||||||+...+.|+.+..+ + ..++.
T Consensus 35 yrP~~l~dv~~~~ei~st~~~~~~-------------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelna 101 (360)
T KOG0990|consen 35 YRPPFLGIVIKQEPIWSTENRYSG-------------MPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNA 101 (360)
T ss_pred CCCchhhhHhcCCchhhHHHHhcc-------------CCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhc
Confidence 345566788888888887776643 2333489999999999999999999988653 1 12222
Q ss_pred CCcccccccchHHHHHHHHHHHHh-------CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKARA-------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~-------~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
++-.+. ...+.--..|+.++. ..+..+++||+|++ +...+++|-+.++.. ..++.
T Consensus 102 Sd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM-------------T~~AQnALRRviek~--t~n~r 163 (360)
T KOG0990|consen 102 SDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM-------------TRDAQNALRRVIEKY--TANTR 163 (360)
T ss_pred cCccCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHh-------------hHHHHHHHHHHHHHh--ccceE
Confidence 221111 122233455666653 36789999999977 345566777777765 34677
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHHHHHHH
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICREAAIS 865 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~eA~~~ 865 (957)
++..+|.+..+-|++.. ||. .+.|.+.+.......+..+.+.-..... .-...+++...| |++..++.....
T Consensus 164 F~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~g----Dmr~a~n~Lqs~ 236 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVG----DMRVALNYLQSI 236 (360)
T ss_pred EEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHH----HHHHHHHHHHHH
Confidence 77888999999999998 885 5667667766666666666654433221 223445555555 777777654443
Q ss_pred H
Q 002169 866 A 866 (957)
Q Consensus 866 a 866 (957)
+
T Consensus 237 ~ 237 (360)
T KOG0990|consen 237 L 237 (360)
T ss_pred H
Confidence 3
No 357
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.88 E-value=2.5e-08 Score=118.98 Aligned_cols=163 Identities=19% Similarity=0.258 Sum_probs=98.6
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc-EEEE---eCCCccccc--
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN-FLAV---KGPELFSKW-- 720 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~-~i~v---~~~~l~~~~-- 720 (957)
.|.|++.+|..+.-.+.... .+..-....++...++||+|+||||||++||+++..+... |+.. ++..+....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~-~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGV-HKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCC-ccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 47899998877765543210 0000011122334479999999999999999999987543 3321 111121111
Q ss_pred ---ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-----------cCCcEE
Q 002169 721 ---VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVT 786 (957)
Q Consensus 721 ---vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~ 786 (957)
.|+.. .-...+..|..+ +++|||++.+ ....+..|+..|+... -..+..
T Consensus 283 ~~~~g~~~-~~~G~l~~A~~G---il~iDEi~~l-------------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 283 DPETREFT-LEGGALVLADNG---VCCIDEFDKM-------------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred ccCcceEE-ecCccEEecCCC---EEEEechhhC-------------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 11100 001123334344 9999999976 3445566777775421 124678
Q ss_pred EEEecCCCC-------------CCChhhhCCCCcceeccc-CCCCHHHHHHHHHHHH
Q 002169 787 VIAATNRPD-------------KIDPALLRPGRFDRLLYV-GPPNETDREEIFRIHL 829 (957)
Q Consensus 787 VI~aTN~~~-------------~id~aLlr~gRfd~~i~~-~~P~~~er~~Il~~~l 829 (957)
||+|+|..+ .+++++++ |||-++.+ ..|+.+...+|.+..+
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHH
Confidence 999999653 58999999 99976555 7788888888777644
No 358
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.88 E-value=3.4e-09 Score=108.16 Aligned_cols=111 Identities=23% Similarity=0.343 Sum_probs=73.9
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCC----cEEEEeCCCcccccccchHHHHHHH-------HHHHHhCCCeEEEEeC
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGL----NFLAVKGPELFSKWVGESEKAVRSL-------FAKARANAPSIIFFDE 747 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~----~~i~v~~~~l~~~~vg~~~~~ir~~-------f~~A~~~~p~ILfiDE 747 (957)
|...++|+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..+ ....... ||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~g---VVllDE 76 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGG---VVLLDE 76 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHT---EEEEET
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchh---hhhhHH
Confidence 4456999999999999999999999996 9999999888661 0011111111 1122223 999999
Q ss_pred CchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCCC
Q 002169 748 IDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPDK 796 (957)
Q Consensus 748 id~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~~ 796 (957)
||...+.. ..........+++.||+.|++-. ...++++|+|+|--..
T Consensus 77 idKa~~~~--~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 77 IDKAHPSN--SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp GGGCSHTT--TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred Hhhccccc--cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 99886641 11112233578899999998542 2347899999995543
No 359
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.87 E-value=1.4e-08 Score=116.50 Aligned_cols=122 Identities=25% Similarity=0.379 Sum_probs=77.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCc-------EEEEe----ccccccccc----chh--HHHHHHHHHHHhc--cC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVN-------LFTVN----GPEVVSQNY----GES--EQALHEVFDSASQ--SA 388 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~-------~i~i~----~~~l~~~~~----ge~--e~~i~~vf~~a~~--~~ 388 (957)
.+++++|+||||||||++|+.+|..+... .+.+. ..+++..+. |-. ...+..+++.|.. ..
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 36789999999999999999999887431 12222 123332221 100 1123344455553 35
Q ss_pred CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhh--------------------ccccCCCeEEEEecCCCC----Cc
Q 002169 389 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD--------------------GVCRTDGVLVIAATNRPD----SI 444 (957)
Q Consensus 389 p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld--------------------~l~~~~~v~vI~ttN~~~----~l 444 (957)
|.+|||||++..... ++...++.+|+ .+.-..++.||+|+|..| .+
T Consensus 273 ~~vliIDEINRani~----------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~l 342 (459)
T PRK11331 273 KYVFIIDEINRANLS----------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVV 342 (459)
T ss_pred CcEEEEehhhccCHH----------HhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhc
Confidence 899999999865322 23333444443 123346799999999988 79
Q ss_pred hhhhhCCCCcceeeeecC
Q 002169 445 EPALRRPGRLDREIEIAV 462 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~ 462 (957)
|.|++| ||.. |++.+
T Consensus 343 D~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 343 DYALRR--RFSF-IDIEP 357 (459)
T ss_pred cHHHHh--hhhe-EEecC
Confidence 999999 8844 56654
No 360
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.86 E-value=2e-08 Score=112.92 Aligned_cols=153 Identities=21% Similarity=0.294 Sum_probs=96.5
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-------CcEE---------
Q 002169 295 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-------VNLF--------- 358 (957)
Q Consensus 295 ~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-------~~~i--------- 358 (957)
|..|.|.++.|..|.-.+..| ...+++|.|+||+||||+++++++.+. .++-
T Consensus 3 f~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMM 70 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcccc
Confidence 567899998887764432111 246899999999999999999998772 1110
Q ss_pred EEecc-------------------cccc-----cccchh--HHHH--------HHHHHHHhccCCeEEEEcCccccccCC
Q 002169 359 TVNGP-------------------EVVS-----QNYGES--EQAL--------HEVFDSASQSAPAVVFIDELDAIAPAR 404 (957)
Q Consensus 359 ~i~~~-------------------~l~~-----~~~ge~--e~~i--------~~vf~~a~~~~p~IL~IDEiD~l~~~~ 404 (957)
..+|. ++-. ...|.. +..+ ..++..| ...+||+||++.+.
T Consensus 71 ~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~--- 144 (337)
T TIGR02030 71 CEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLE--- 144 (337)
T ss_pred ChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCC---
Confidence 00011 1000 111111 0100 0111112 23599999999873
Q ss_pred cCCCchHHHHHHHHHHHHhhcc-----------ccCCCeEEEEecCCCC-CchhhhhCCCCcceeeeecCCCH-HHHHHH
Q 002169 405 KDGGEELSQRMVATLLNLMDGV-----------CRTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIAVPSP-AQRLEI 471 (957)
Q Consensus 405 ~~~~~~~~~~i~~~Ll~~ld~l-----------~~~~~v~vI~ttN~~~-~ld~al~r~gRfd~~I~i~~P~~-~~r~~I 471 (957)
..+...|++.|+.- ....++++|+++|..+ .+++++.. ||...+.++.|.. ++|.+|
T Consensus 145 --------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eI 214 (337)
T TIGR02030 145 --------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEI 214 (337)
T ss_pred --------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHH
Confidence 34566677777541 1124578888888765 68899998 9998899999876 888899
Q ss_pred HHHH
Q 002169 472 LHAL 475 (957)
Q Consensus 472 l~~~ 475 (957)
++..
T Consensus 215 L~~~ 218 (337)
T TIGR02030 215 VERR 218 (337)
T ss_pred HHhh
Confidence 8774
No 361
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.86 E-value=3.1e-08 Score=111.47 Aligned_cols=159 Identities=18% Similarity=0.294 Sum_probs=101.4
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-------cEEEEe---
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-------NLFTVN--- 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~-------~~i~i~--- 361 (957)
.+.|.+|.|+++.|..|.-.+..| ...+|||.|++|||||++||+++..+.. +|. ..
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCC
Confidence 346789999999888877664332 2348999999999999999999877632 121 00
Q ss_pred ----ccccccc-------------------ccchhHHH------HHHHHHHH---------hccCCeEEEEcCccccccC
Q 002169 362 ----GPEVVSQ-------------------NYGESEQA------LHEVFDSA---------SQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 362 ----~~~l~~~-------------------~~ge~e~~------i~~vf~~a---------~~~~p~IL~IDEiD~l~~~ 403 (957)
+.++.+. ..|.++.. +...|... ......+||+||++.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~-- 157 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD-- 157 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC--
Confidence 0000000 00111111 11111111 01123599999998874
Q ss_pred CcCCCchHHHHHHHHHHHHhhcc-----------ccCCCeEEEEecCCCC-CchhhhhCCCCcceeeeecCCC-HHHHHH
Q 002169 404 RKDGGEELSQRMVATLLNLMDGV-----------CRTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIAVPS-PAQRLE 470 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~ld~l-----------~~~~~v~vI~ttN~~~-~ld~al~r~gRfd~~I~i~~P~-~~~r~~ 470 (957)
..+...|++.|+.- ....++++|++.|..+ .+.+++.. ||...+.++.|+ .+.+.+
T Consensus 158 ---------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~ 226 (350)
T CHL00081 158 ---------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVK 226 (350)
T ss_pred ---------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHH
Confidence 34556677777541 1134578888888765 68899988 999899999997 699999
Q ss_pred HHHHHH
Q 002169 471 ILHALL 476 (957)
Q Consensus 471 Il~~~l 476 (957)
|++...
T Consensus 227 il~~~~ 232 (350)
T CHL00081 227 IVEQRT 232 (350)
T ss_pred HHHhhh
Confidence 998753
No 362
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.86 E-value=2.7e-08 Score=119.82 Aligned_cols=198 Identities=14% Similarity=0.225 Sum_probs=117.8
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEE-Eec---cccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFT-VNG---PEVV 366 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~-i~~---~~l~ 366 (957)
.+..++++.|.++.++.++.++... .++..+++.++|+|||||||||+++++|++++..+.+ ++. ....
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~-------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQ-------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhc-------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 3456789999999999988886443 1344566779999999999999999999998865533 111 1100
Q ss_pred ccc------------cchhHHHHHHHHHHHh----------ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhh
Q 002169 367 SQN------------YGESEQALHEVFDSAS----------QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 424 (957)
Q Consensus 367 ~~~------------~ge~e~~i~~vf~~a~----------~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld 424 (957)
..| +......++.++..+. .....||||||++.+.... .+.+..++..
T Consensus 152 ~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~--------~~~lq~lLr~-- 221 (637)
T TIGR00602 152 NDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD--------TRALHEILRW-- 221 (637)
T ss_pred cccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh--------HHHHHHHHHH--
Confidence 000 0122234455555443 1246799999999875321 1123333331
Q ss_pred ccccCCCeEEEEecCC-CC--------C------chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCC------CC
Q 002169 425 GVCRTDGVLVIAATNR-PD--------S------IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEH------SL 483 (957)
Q Consensus 425 ~l~~~~~v~vI~ttN~-~~--------~------ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~------~l 483 (957)
.+...+.+.+|++++. +. . +.+++++..|. ..|.|.+.+..+....|+..+..... .+
T Consensus 222 ~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~ 300 (637)
T TIGR00602 222 KYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKV 300 (637)
T ss_pred HhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccccccc
Confidence 1112344555555542 11 1 22566643344 35899999999977777776654321 11
Q ss_pred -ChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 484 -LDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 484 -~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
.+..++.++....| |++..+..-
T Consensus 301 p~~~~l~~I~~~s~G----DiRsAIn~L 324 (637)
T TIGR00602 301 PKKTSVELLCQGCSG----DIRSAINSL 324 (637)
T ss_pred CCHHHHHHHHHhCCC----hHHHHHHHH
Confidence 34677888876555 666655443
No 363
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.8e-08 Score=113.07 Aligned_cols=148 Identities=26% Similarity=0.347 Sum_probs=100.2
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----------------------
Q 002169 298 LGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG----------------------- 354 (957)
Q Consensus 298 i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~----------------------- 354 (957)
+.|.+.....+...+... + +.+..+||+||||+|||++|.++|+.+.
T Consensus 3 ~~~~~~~~~~l~~~~~~~---------~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~ 72 (325)
T COG0470 3 LVPWQEAVKRLLVQALES---------G-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGN 72 (325)
T ss_pred cccchhHHHHHHHHHHhc---------C-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcC
Confidence 455565555555553211 1 1222599999999999999999999886
Q ss_pred -CcEEEEecccccccccchhHHHHHHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccC
Q 002169 355 -VNLFTVNGPEVVSQNYGESEQALHEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT 429 (957)
Q Consensus 355 -~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~ 429 (957)
..+++++.++..... -....++.+-+.... ....|++|||+|.+.. ...+.++..++. ..
T Consensus 73 ~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~-----------~A~nallk~lEe--p~ 137 (325)
T COG0470 73 HPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE-----------DAANALLKTLEE--PP 137 (325)
T ss_pred CCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-----------HHHHHHHHHhcc--CC
Confidence 467788877654432 233445555544332 3467999999999853 455678888877 45
Q ss_pred CCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHH
Q 002169 430 DGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILH 473 (957)
Q Consensus 430 ~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~ 473 (957)
.+..+|++||.++.+-+.+++ |.. .+.|..|+........+
T Consensus 138 ~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 138 KNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred CCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 678999999999999999998 653 37777655544443333
No 364
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.85 E-value=2.1e-08 Score=101.55 Aligned_cols=133 Identities=26% Similarity=0.377 Sum_probs=92.7
Q ss_pred ChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------------------
Q 002169 650 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------------------- 706 (957)
Q Consensus 650 G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------------------- 706 (957)
|++++++.|...+.. -+.+..+||+||+|+||+++|+++|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 788888888888753 355677999999999999999999987521
Q ss_pred cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccC
Q 002169 707 NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR 782 (957)
Q Consensus 707 ~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~ 782 (957)
.++.++..+... .-....+|.+...+.. +...|++|||+|.+ .....++||..|+. +.
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-------------~~~a~NaLLK~LEe--pp 130 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-------------TEEAQNALLKTLEE--PP 130 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS--------------HHHHHHHHHHHHS--TT
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-------------hHHHHHHHHHHhcC--CC
Confidence 344444332211 1134566766666543 34579999999966 56778899999995 45
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceecccCC
Q 002169 783 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGP 815 (957)
Q Consensus 783 ~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~ 815 (957)
.++.+|++|+.++.+-|.+++ |+ ..+.|++
T Consensus 131 ~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRS--RC-QVIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHT--TS-EEEEE--
T ss_pred CCEEEEEEECChHHChHHHHh--hc-eEEecCC
Confidence 689999999999999999999 87 4666654
No 365
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.7e-08 Score=106.49 Aligned_cols=83 Identities=34% Similarity=0.581 Sum_probs=62.4
Q ss_pred CeEEEEcCccccccCCcCCCchHH-HHHHHHHHHHhhcc--------ccCCCeEEEEec----CCCCCchhhhhCCCCcc
Q 002169 389 PAVVFIDELDAIAPARKDGGEELS-QRMVATLLNLMDGV--------CRTDGVLVIAAT----NRPDSIEPALRRPGRLD 455 (957)
Q Consensus 389 p~IL~IDEiD~l~~~~~~~~~~~~-~~i~~~Ll~~ld~l--------~~~~~v~vI~tt----N~~~~ld~al~r~gRfd 455 (957)
-.|+||||||.++.+.+.++.+.+ ..+...||-++++- -....+.||++. ..|.+|-|.|. |||.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRfP 328 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRFP 328 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCCc
Confidence 359999999999987764443433 45666788888874 234557788765 45777888885 5999
Q ss_pred eeeeecCCCHHHHHHHHH
Q 002169 456 REIEIAVPSPAQRLEILH 473 (957)
Q Consensus 456 ~~I~i~~P~~~~r~~Il~ 473 (957)
-.+++...+.++...||.
T Consensus 329 IRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 329 IRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEcccCCHHHHHHHHc
Confidence 999999999999888874
No 366
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.84 E-value=1.2e-07 Score=98.48 Aligned_cols=196 Identities=20% Similarity=0.280 Sum_probs=136.9
Q ss_pred HHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEe
Q 002169 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVK 712 (957)
Q Consensus 636 ~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~ 712 (957)
.+...+.+.+.+++|.+.+++.+.+..+... .-.|..++||+|.-|||||+++||+-++. +..+|+|+
T Consensus 50 pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~---------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~ 120 (287)
T COG2607 50 PVPDPDPIDLADLVGVDRQKEALVRNTEQFA---------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD 120 (287)
T ss_pred CCCCCCCcCHHHHhCchHHHHHHHHHHHHHH---------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc
Confidence 3455677899999999999999877654332 23467789999999999999999998876 56778887
Q ss_pred CCCcccccccchHHHHHHHHHHHHhCC-CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--cCCcEEEEE
Q 002169 713 GPELFSKWVGESEKAVRSLFAKARANA-PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--QRVNVTVIA 789 (957)
Q Consensus 713 ~~~l~~~~vg~~~~~ir~~f~~A~~~~-p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--~~~~v~VI~ 789 (957)
..++. .+-.+++..+... .-|||.|+.- + +..+.....|-..|+|-. ...+|+|.+
T Consensus 121 k~dl~---------~Lp~l~~~Lr~~~~kFIlFcDDLS-F-----------e~gd~~yK~LKs~LeG~ve~rP~NVl~YA 179 (287)
T COG2607 121 KEDLA---------TLPDLVELLRARPEKFILFCDDLS-F-----------EEGDDAYKALKSALEGGVEGRPANVLFYA 179 (287)
T ss_pred HHHHh---------hHHHHHHHHhcCCceEEEEecCCC-C-----------CCCchHHHHHHHHhcCCcccCCCeEEEEE
Confidence 76653 2345566555433 3599999864 1 122333445666677642 345899999
Q ss_pred ecCCCCCCChhhh--------------------CCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcc-cH--HH--HH
Q 002169 790 ATNRPDKIDPALL--------------------RPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV-NI--RE--LA 844 (957)
Q Consensus 790 aTN~~~~id~aLl--------------------r~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~-~l--~~--la 844 (957)
|+|+.+.+...+. =..||.-.+-|++++.++...|++.+++++++.... .+ ++ -|
T Consensus 180 TSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WA 259 (287)
T COG2607 180 TSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWA 259 (287)
T ss_pred ecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9998876632211 123999999999999999999999999999887532 22 22 23
Q ss_pred HHccCCcHHHHHHHHHH
Q 002169 845 CLSEGCTGADISLICRE 861 (957)
Q Consensus 845 ~~t~g~sg~dl~~l~~e 861 (957)
..-.|-|||-....++.
T Consensus 260 t~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 260 TTRGGRSGRVAWQFIRD 276 (287)
T ss_pred HhcCCCccHhHHHHHHH
Confidence 44456778776666653
No 367
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.84 E-value=2.4e-08 Score=120.46 Aligned_cols=53 Identities=28% Similarity=0.453 Sum_probs=44.7
Q ss_pred hhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC
Q 002169 638 LEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG 705 (957)
Q Consensus 638 ~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~ 705 (957)
+++|+..|++++|++++++.|..++.. .++++|+||||||||++|++++..+.
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 456788999999999999988776642 24799999999999999999997654
No 368
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=5.6e-08 Score=109.29 Aligned_cols=150 Identities=21% Similarity=0.298 Sum_probs=103.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCc------------------------EEEEecccccccccchhHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVN------------------------LFTVNGPEVVSQNYGESEQALHEVFDS 383 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~------------------------~i~i~~~~l~~~~~ge~e~~i~~vf~~ 383 (957)
.+..+||+||+|+|||++|+++|+.+-+. ++.+...+- ++. -.-..+|++.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHHH
Confidence 35679999999999999999999877431 222221100 000 122355555554
Q ss_pred Hh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeee
Q 002169 384 AS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIE 459 (957)
Q Consensus 384 a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~ 459 (957)
+. .....|++|||+|.+. ....+.|++.|++. .+++++|++|+.++.+.|.+++ |... +.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~-----------~~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~ 161 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN-----------RNAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKS--RCQQ-QA 161 (328)
T ss_pred HhhccccCCCeEEEECChhhCC-----------HHHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHh--hcee-ee
Confidence 43 3446799999999884 34567899999883 4688999999999999999999 7744 89
Q ss_pred ecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcH
Q 002169 460 IAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500 (957)
Q Consensus 460 i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~g 500 (957)
|+.|+.++..+.+..... ...+.....++...+|-.+
T Consensus 162 ~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 162 CPLPSNEESLQWLQQALP----ESDERERIELLTLAGGSPL 198 (328)
T ss_pred CCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHH
Confidence 999999988877765431 1244455566666666544
No 369
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.83 E-value=1.7e-08 Score=122.04 Aligned_cols=191 Identities=21% Similarity=0.230 Sum_probs=118.1
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCC--cEEEEeCCCcccccccchH--HHH--------HHHHHHHHhCCCeEEEEeCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPELFSKWVGESE--KAV--------RSLFAKARANAPSIIFFDEI 748 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~~~l~~~~vg~~~--~~i--------r~~f~~A~~~~p~ILfiDEi 748 (957)
.|+||.|+||||||++|++|+..+.. +|+.+..........|... ..+ ...+.+|..+ +||+|||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~G---vL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRG---VLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCC---cEeccch
Confidence 46999999999999999999998754 6888875322222222210 000 1122333333 9999999
Q ss_pred chhhhhcCCCCCCCcchHHHHHHHHHHHhccc-----------cCCcEEEEEecCCCC---CCChhhhCCCCcceecccC
Q 002169 749 DGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD---KIDPALLRPGRFDRLLYVG 814 (957)
Q Consensus 749 d~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~VI~aTN~~~---~id~aLlr~gRfd~~i~~~ 814 (957)
+.+ ...+++.|+..|+.-. ...++.||+++|..+ .+.++|+. ||...+.+.
T Consensus 94 ~rl-------------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 94 NLL-------------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hhC-------------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 966 4567778888886421 123678999888765 68899999 998776664
Q ss_pred -CCCHHHHHHHHHHHHhcCC----CC--------------------CcccHHHHHHHc--cCCc-HHHHHHHHHHHHHHH
Q 002169 815 -PPNETDREEIFRIHLRKIP----CS--------------------SDVNIRELACLS--EGCT-GADISLICREAAISA 866 (957)
Q Consensus 815 -~P~~~er~~Il~~~l~~~~----~~--------------------~~~~l~~la~~t--~g~s-g~dl~~l~~eA~~~a 866 (957)
.|+.++|.+|++..+..+. .. .+..+..++..+ .|.+ .+-...+++-|...|
T Consensus 159 ~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~A 238 (589)
T TIGR02031 159 DVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHA 238 (589)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH
Confidence 4566778898887653211 00 111122232222 1332 233334445444444
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 867 IEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
..+. ...|+.+|+..++.-+.++
T Consensus 239 al~g--r~~V~~~Dv~~a~~lvl~h 261 (589)
T TIGR02031 239 ALHG--RTEVTEEDLKLAVELVLLP 261 (589)
T ss_pred HHhC--CCCCCHHHHHHHHHHHhhh
Confidence 4443 6789999999998776543
No 370
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.83 E-value=2.4e-09 Score=102.26 Aligned_cols=104 Identities=26% Similarity=0.393 Sum_probs=60.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEecc------cccccccchhHH-----HHHHHHHHHhccCCeEEEEcCccc
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP------EVVSQNYGESEQ-----ALHEVFDSASQSAPAVVFIDELDA 399 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~------~l~~~~~ge~e~-----~i~~vf~~a~~~~p~IL~IDEiD~ 399 (957)
||||.|+||+|||++|+++|+.++..|..|.+. |+.+..+-..+. .-..+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 699999999999999999999999999888763 233322111110 111111 24999999976
Q ss_pred cccCCcCCCchHHHHHHHHHHHHhhcc---------ccCCCeEEEEecCCCC-----CchhhhhCCCCc
Q 002169 400 IAPARKDGGEELSQRMVATLLNLMDGV---------CRTDGVLVIAATNRPD-----SIEPALRRPGRL 454 (957)
Q Consensus 400 l~~~~~~~~~~~~~~i~~~Ll~~ld~l---------~~~~~v~vI~ttN~~~-----~ld~al~r~gRf 454 (957)
. ..+..+.|++.|.+- .-...++||+|.|+.+ .++++++. ||
T Consensus 74 a-----------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 A-----------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred C-----------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 5 346677889988763 1234588999999876 67788887 77
No 371
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.82 E-value=3.9e-08 Score=115.57 Aligned_cols=210 Identities=21% Similarity=0.229 Sum_probs=127.8
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC----cEEE------EeC
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----NFLA------VKG 713 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----~~i~------v~~ 713 (957)
.+.++.|+..+++.+.- ......+++|+||||||||++++.+++.+.. ..+. +.+
T Consensus 189 d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 56778888877765421 2345567999999999999999999976521 1111 111
Q ss_pred C-----Cc-----cc--------ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHH
Q 002169 714 P-----EL-----FS--------KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE 775 (957)
Q Consensus 714 ~-----~l-----~~--------~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ 775 (957)
. .+ .+ ..+|.....-...+..|..+ +||+||++.+ ...++..|++.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~-------------~~~~~~~L~~~ 317 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEF-------------ERRTLDALREP 317 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhC-------------CHHHHHHHHHH
Confidence 0 01 00 01121111223567788777 9999999854 45677778887
Q ss_pred Hhccc-----------cCCcEEEEEecCCCC---------------------CCChhhhCCCCcceecccCCCCHHH---
Q 002169 776 LDGLH-----------QRVNVTVIAATNRPD---------------------KIDPALLRPGRFDRLLYVGPPNETD--- 820 (957)
Q Consensus 776 ld~~~-----------~~~~v~VI~aTN~~~---------------------~id~aLlr~gRfd~~i~~~~P~~~e--- 820 (957)
|+.-. ...++.+|+|+|... .+..+++. |||-.+.++.|+.++
T Consensus 318 LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~ 395 (506)
T PRK09862 318 IESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSK 395 (506)
T ss_pred HHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhc
Confidence 75422 134689999999753 46778998 999999998774321
Q ss_pred -------HHHHHH-------HH-HhcCCCCCccc-------------HH---HHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 002169 821 -------REEIFR-------IH-LRKIPCSSDVN-------------IR---ELACLSEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 821 -------r~~Il~-------~~-l~~~~~~~~~~-------------l~---~la~~t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
...|-+ .. .++..+..... .. +-+....|.|.|....+++-|...|..+
T Consensus 396 ~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~ 475 (506)
T PRK09862 396 TVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADID 475 (506)
T ss_pred ccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 111111 00 00000011110 01 1122334678888888888888777666
Q ss_pred hcCCCCCCHHHHHHHHHhh
Q 002169 870 NLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 870 ~~~~~~It~~d~~~al~~~ 888 (957)
. ...|+.+|+.+|+.-.
T Consensus 476 g--~~~V~~~hv~eAl~yR 492 (506)
T PRK09862 476 Q--SDIITRQHLQEAVSYR 492 (506)
T ss_pred C--CCCCCHHHHHHHHHhh
Confidence 5 6789999999998643
No 372
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.81 E-value=2.6e-09 Score=124.69 Aligned_cols=225 Identities=23% Similarity=0.341 Sum_probs=144.7
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh--CCcEEEEeCCCc---------ccc----cccchHHHHHHHHHHHHhCCCeEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA--GLNFLAVKGPEL---------FSK----WVGESEKAVRSLFAKARANAPSIIF 744 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~--~~~~i~v~~~~l---------~~~----~vg~~~~~ir~~f~~A~~~~p~ILf 744 (957)
.-.+++.|.|||||-.+||+|...+ ..||+.+++..+ ++. +.|...+..+..+..|..+ .||
T Consensus 336 ~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG---tlF 412 (606)
T COG3284 336 DLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG---TLF 412 (606)
T ss_pred CCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC---ccH
Confidence 4569999999999999999997665 469999998644 322 2222335556677777777 999
Q ss_pred EeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc--------ccCCcEEEEEecCCCCCCChhhhCCCCcceeccc---
Q 002169 745 FDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL--------HQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYV--- 813 (957)
Q Consensus 745 iDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~--------~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~--- 813 (957)
+|||..| ...+++.||..|... ....++.||+|||++-. .|.+.|||.+-+|+
T Consensus 413 ldeIgd~-------------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~---~lv~~g~fredLyyrL~ 476 (606)
T COG3284 413 LDEIGDM-------------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLA---QLVEQGRFREDLYYRLN 476 (606)
T ss_pred HHHhhhc-------------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHH---HHHHcCCchHHHHHHhc
Confidence 9999855 456777888887642 23447899999998765 88899999886665
Q ss_pred ----CCCCHHHHH---HHHHHHHhcCC-CCCcccHHHH----HHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 002169 814 ----GPPNETDRE---EIFRIHLRKIP-CSSDVNIREL----ACLSEGCTGADISLICREAAISAIEENLDASRITMQHL 881 (957)
Q Consensus 814 ----~~P~~~er~---~Il~~~l~~~~-~~~~~~l~~l----a~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~ 881 (957)
.+|...+|. ..+..++.+.. ..-..+-+.+ ++.=.| +.+++.++++.++..+ +...|...|+
T Consensus 477 ~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~-----~~g~~~~~dl 550 (606)
T COG3284 477 AFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS-----DGGRIRVSDL 550 (606)
T ss_pred CeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC-----CCCeeEcccC
Confidence 466666554 34444443322 2122222222 333445 7899999999888665 3444555555
Q ss_pred HHHHHhhCCCchHHHHHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 882 KTAIRHVQPSEIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 882 ~~al~~~~p~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
...+..-+.+. .+..++.-......+..+++...++-.| ++||+++|.
T Consensus 551 p~~l~~~~~~~-------~~~~~~~~l~~al~~~~~~is~aa~~lgi~R~T~yrklk~ 601 (606)
T COG3284 551 PPELLEEQATP-------REDIEKAALLAALQATNGNISEAARLLGISRSTLYRKLKR 601 (606)
T ss_pred CHHHHhhhccc-------ccchHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 54444322221 2223333333444555666666666665 789999886
No 373
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.81 E-value=4.2e-08 Score=110.64 Aligned_cols=171 Identities=20% Similarity=0.172 Sum_probs=106.9
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccccc-----chh-------HHHHHHHHHHHhccCCeE
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY-----GES-------EQALHEVFDSASQSAPAV 391 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~-----ge~-------e~~i~~vf~~a~~~~p~I 391 (957)
....+|||+|++||||+++|++|.... +.+|+.++|..+..... |.. ...-...|+.|. ..+
T Consensus 20 ~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGt 96 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGT 96 (329)
T ss_pred CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCE
Confidence 346789999999999999999998755 46899999987643211 000 000111244443 459
Q ss_pred EEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc---------cCCCeEEEEecCCCC-------CchhhhhCCCCcc
Q 002169 392 VFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---------RTDGVLVIAATNRPD-------SIEPALRRPGRLD 455 (957)
Q Consensus 392 L~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~---------~~~~v~vI~ttN~~~-------~ld~al~r~gRfd 455 (957)
|||||++.+. ..+...|+..++.-. ...++.+|++|+..- .+.+.|.. |+.
T Consensus 97 L~Ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~ 163 (329)
T TIGR02974 97 LFLDELATAS-----------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA 163 (329)
T ss_pred EEeCChHhCC-----------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc
Confidence 9999999883 345566777775421 123578899987531 22333433 443
Q ss_pred eeeeecCCCHHHHHH----HHHHHHc----C--CC--CCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 456 REIEIAVPSPAQRLE----ILHALLS----G--ME--HSLLDSEVEYLSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 456 ~~I~i~~P~~~~r~~----Il~~~l~----~--~~--~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
.+.|..|...+|.+ +++.++. + .. ..+++..++.|..+.-.-+.++|+++++.++..+
T Consensus 164 -~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 164 -FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred -chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 25667777776643 3333322 1 22 3578888888888765567788888888776543
No 374
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=1.5e-07 Score=105.14 Aligned_cols=146 Identities=16% Similarity=0.236 Sum_probs=103.1
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCC------------------------cEEEEeCCCcccccccchHHHHHHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGL------------------------NFLAVKGPELFSKWVGESEKAVRSLFA 733 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------------------~~i~v~~~~l~~~~vg~~~~~ir~~f~ 733 (957)
+.+..+||.||.|+||+++|+++|+.+-. .++.+...+ ++ .-....+|.+.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHHHH
Confidence 45678999999999999999999987532 122232110 11 113556777666
Q ss_pred HHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcce
Q 002169 734 KARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 734 ~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~ 809 (957)
.+.. +.-.|++||++|.+ .....|.||..|+. +..++++|.+|+.++.+-|.+++ |+ .
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m-------------~~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~ 159 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERL-------------TEAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-Q 159 (325)
T ss_pred HHhhccccCCceEEEEechhhh-------------CHHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-e
Confidence 6543 34479999999977 45677899999995 56689999999999999999999 87 5
Q ss_pred ecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccC
Q 002169 810 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG 849 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g 849 (957)
.+.|++|+.++..+.+..... ........++..+.|
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g 195 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYG 195 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCC
Confidence 889999999888777765431 112223444555665
No 375
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.80 E-value=2.2e-08 Score=117.70 Aligned_cols=233 Identities=18% Similarity=0.253 Sum_probs=137.4
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccccc-----c----hH---HHHHHHHHHHHhCCCeEE
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVG-----E----SE---KAVRSLFAKARANAPSII 743 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg-----~----~~---~~ir~~f~~A~~~~p~IL 743 (957)
....++++|++||||+++|+++.... +.+|+.+++..+...+.. . .. ......+..| ...+|
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl 237 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEA---DGGTL 237 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeEC---CCCEE
Confidence 34569999999999999999998665 579999999876332111 0 00 0001122333 24599
Q ss_pred EEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCCCCChhhhCCCCcce-----
Q 002169 744 FFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPDKIDPALLRPGRFDR----- 809 (957)
Q Consensus 744 fiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~~id~aLlr~gRfd~----- 809 (957)
|||||+.+. ...+..|+..++... ...++.+|++|+..-. .+..+|+|..
T Consensus 238 ~ldei~~l~-------------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~---~~~~~~~~~~~l~~~ 301 (441)
T PRK10365 238 FLDEIGDIS-------------PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA---AEVNAGRFRQDLYYR 301 (441)
T ss_pred EEeccccCC-------------HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH---HHHHcCCchHHHHHH
Confidence 999999773 344556777776421 1125788988876432 4445567654
Q ss_pred --ecccCCCCHHHHH----HHHHHHHhc----CCCC----CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 810 --LLYVGPPNETDRE----EIFRIHLRK----IPCS----SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 810 --~i~~~~P~~~er~----~Il~~~l~~----~~~~----~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.+.+..|...+|. .+++.++.+ .+.. ....+..|.....--+.++++++++.|+..+ +...
T Consensus 302 l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~-----~~~~ 376 (441)
T PRK10365 302 LNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL-----TGEY 376 (441)
T ss_pred hccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC-----CCCc
Confidence 3445566666553 344444433 2211 1223344444442226799999999877653 2456
Q ss_pred CCHHHHHHHHHhhC-CC-chHHHHHHHHHHHHHhcCchhhhhcccccccchhhh---hhhhhccCC
Q 002169 876 ITMQHLKTAIRHVQ-PS-EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIG---SNMWTLIKS 936 (957)
Q Consensus 876 It~~d~~~al~~~~-p~-~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g---~~L~~~~k~ 936 (957)
|+.+++...+.... +. ....... .+.+++.++........++..+.++..| .+||.++|+
T Consensus 377 i~~~~l~~~~~~~~~~~~~~~~~~~-l~~~e~~~i~~~l~~~~gn~~~aa~~Lgisr~tl~rk~~~ 441 (441)
T PRK10365 377 ISERELPLAIASTPIPLGQSQDIQP-LVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 (441)
T ss_pred cchHhCchhhcccccCcccccchhh-HHHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHhhC
Confidence 77777765443211 11 0011112 2446666777777777777777777776 789999874
No 376
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.80 E-value=1.8e-07 Score=99.29 Aligned_cols=111 Identities=21% Similarity=0.234 Sum_probs=77.3
Q ss_pred CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC-------------CCCchhhhhCCCCcc
Q 002169 389 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR-------------PDSIEPALRRPGRLD 455 (957)
Q Consensus 389 p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~-------------~~~ld~al~r~gRfd 455 (957)
|.||||||++.| +-.-...|...++. .-.-+||+++|+ |.-+++.+.. |+
T Consensus 297 PGVLFIDEVhML-----------DiEcFTyL~kalES---~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl- 359 (456)
T KOG1942|consen 297 PGVLFIDEVHML-----------DIECFTYLHKALES---PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RL- 359 (456)
T ss_pred CcceEeeehhhh-----------hhHHHHHHHHHhcC---CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh--he-
Confidence 889999998877 22333444444443 233478888887 4566777766 55
Q ss_pred eeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 002169 456 REIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 456 ~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~r 516 (957)
..|..-.+++++.++|++......++.+++..+..|+.....-+-+...+|+.-|...|-.
T Consensus 360 ~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~ 420 (456)
T KOG1942|consen 360 LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKT 420 (456)
T ss_pred eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHH
Confidence 2366777899999999999998888898999999998876665656555555555444433
No 377
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=8.3e-08 Score=107.37 Aligned_cols=179 Identities=21% Similarity=0.245 Sum_probs=119.3
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------EEEEeccc
Q 002169 295 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN----------LFTVNGPE 364 (957)
Q Consensus 295 ~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~----------~i~i~~~~ 364 (957)
|++|.|.+.+++.++..+... +-+..+||+||+|+||+++|.++|..+-+. +...+-+|
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD 71 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD 71 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC
Confidence 678999999999999986433 235579999999999999999999876221 00111122
Q ss_pred ccccc-----cch--------------------hHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHH
Q 002169 365 VVSQN-----YGE--------------------SEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRM 415 (957)
Q Consensus 365 l~~~~-----~ge--------------------~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i 415 (957)
+.--+ .|. .-..++.+.+.+. .....|++||++|.+. ...
T Consensus 72 l~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-----------~~a 140 (314)
T PRK07399 72 LLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-----------EAA 140 (314)
T ss_pred EEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------HHH
Confidence 11000 010 0124556655443 2346799999998883 234
Q ss_pred HHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHc
Q 002169 416 VATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMAT 495 (957)
Q Consensus 416 ~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t 495 (957)
.+.|+..|++.. +.++|++|+.++.+.|.+++ |. ..+.|+.++.++..+++........ .+.+...++...
T Consensus 141 aNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~---~~~~~~~l~~~a 211 (314)
T PRK07399 141 ANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEI---LNINFPELLALA 211 (314)
T ss_pred HHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhcccc---chhHHHHHHHHc
Confidence 567999998853 45788888899999999999 65 4489999999999998887542211 122346667767
Q ss_pred CCCcHHHHH
Q 002169 496 HGFVGADLA 504 (957)
Q Consensus 496 ~g~~gaDi~ 504 (957)
.|-.+.-+.
T Consensus 212 ~Gs~~~al~ 220 (314)
T PRK07399 212 QGSPGAAIA 220 (314)
T ss_pred CCCHHHHHH
Confidence 765554443
No 378
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.78 E-value=6.5e-08 Score=114.97 Aligned_cols=193 Identities=22% Similarity=0.299 Sum_probs=119.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHH-----------cCCcEEEEe
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHD-----------SGVNLFTVN 361 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~-----------l~~~~i~i~ 361 (957)
..++++.|.+..++.+++.+... .....+|||+|++||||+++|+++... .+.+|+.+|
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 45778999999888888876433 123568999999999999999999887 356899999
Q ss_pred ccccccccc-----chhH--------HHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-
Q 002169 362 GPEVVSQNY-----GESE--------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC- 427 (957)
Q Consensus 362 ~~~l~~~~~-----ge~e--------~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~- 427 (957)
|..+..... |..+ ..-..+|+.|.. ..||||||+.|. ..+...|+..++.-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp-----------~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMP-----------LPLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCC-----------HHHHHHHHhhhhcCeE
Confidence 987643211 1000 001124555543 489999999873 345566777776421
Q ss_pred --------cCCCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHH----HHHHHHcC----CCCCCC
Q 002169 428 --------RTDGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLE----ILHALLSG----MEHSLL 484 (957)
Q Consensus 428 --------~~~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~----Il~~~l~~----~~~~l~ 484 (957)
..-++.+|++||.. +...+ ..|+|.. .+.+..|...+|.+ +++.++.+ ....++
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~--L~~~v-~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~ 428 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCD--LEEDV-RQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFS 428 (538)
T ss_pred EecCCCceeccceEEEEecCCC--HHHHH-hcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCC
Confidence 11246789988763 22222 2334432 36777888777754 33334432 344445
Q ss_pred hHHH-------HHHHHHcCCCcHHHHHHHHHHHHH
Q 002169 485 DSEV-------EYLSMATHGFVGADLAALCNEAAL 512 (957)
Q Consensus 485 ~~~l-------~~La~~t~g~~gaDi~~l~~~A~~ 512 (957)
...+ +.|..+.-.-+.++|+++++.++.
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 4443 333333333456788888887765
No 379
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=7.5e-09 Score=117.56 Aligned_cols=145 Identities=23% Similarity=0.365 Sum_probs=89.2
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC---------Cc-EEEE
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---------LN-FLAV 711 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~---------~~-~i~v 711 (957)
...|.||.||+.+|+.+..+.. -.+++||+||||||||++|+-+...+- .. +..+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~ 239 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSL 239 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhh
Confidence 3478999999999999877664 357899999999999999999875431 00 0111
Q ss_pred eCCCccc--------------------ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHH
Q 002169 712 KGPELFS--------------------KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQ 771 (957)
Q Consensus 712 ~~~~l~~--------------------~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~ 771 (957)
.+ ++.. ..+|......-.-+..|..+ ||||||.-.+ .+.+++.
T Consensus 240 ~g-~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~G---VLFLDElpef-------------~~~iLe~ 302 (490)
T COG0606 240 AG-DLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNG---VLFLDELPEF-------------KRSILEA 302 (490)
T ss_pred cc-cccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCC---EEEeeccchh-------------hHHHHHH
Confidence 11 1100 00110000000112333334 9999998643 4577777
Q ss_pred HHHHHhcccc-----------CCcEEEEEecCCC-----------------------CCCChhhhCCCCcceecccCCCC
Q 002169 772 LLVELDGLHQ-----------RVNVTVIAATNRP-----------------------DKIDPALLRPGRFDRLLYVGPPN 817 (957)
Q Consensus 772 LL~~ld~~~~-----------~~~v~VI~aTN~~-----------------------~~id~aLlr~gRfd~~i~~~~P~ 817 (957)
|.+-|+.-.- ..++..|+|+|.. ..+...+++ |||..+.++.++
T Consensus 303 LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~ 380 (490)
T COG0606 303 LREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLS 380 (490)
T ss_pred HhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCC
Confidence 7777764311 1256677888742 124567777 999999998876
Q ss_pred HHH
Q 002169 818 ETD 820 (957)
Q Consensus 818 ~~e 820 (957)
..+
T Consensus 381 ~~e 383 (490)
T COG0606 381 AGE 383 (490)
T ss_pred HHH
Confidence 433
No 380
>PLN03073 ABC transporter F family; Provisional
Probab=98.78 E-value=2e-08 Score=123.88 Aligned_cols=30 Identities=37% Similarity=0.368 Sum_probs=27.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHH
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~ 352 (957)
++.+.++..+.|+||+|+|||||++++++.
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 467889999999999999999999999964
No 381
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=2.3e-07 Score=103.61 Aligned_cols=152 Identities=19% Similarity=0.233 Sum_probs=103.5
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCC---------------------cEEEEe-CCCccc-c-cccchHHHHHHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGL---------------------NFLAVK-GPELFS-K-WVGESEKAVRSLFA 733 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~---------------------~~i~v~-~~~l~~-~-~vg~~~~~ir~~f~ 733 (957)
+.+..+||+||+|+||+++|.++|..+-. +++.+. .++-.+ + ...-.-..+|.+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 45667999999999999999999976522 122221 111000 0 00112456677776
Q ss_pred HHHhC----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcce
Q 002169 734 KARAN----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 734 ~A~~~----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~ 809 (957)
.+... .-.|++||++|.+ .....|.||+.|+. +..++++|.+|+.++.+-|.+++ |+ .
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC-q 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAI-------------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC-Q 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhh-------------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh-e
Confidence 65432 3369999999977 45667889999995 45588899999999999999999 87 4
Q ss_pred ecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcH
Q 002169 810 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTG 852 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg 852 (957)
.+.|+.|+.++..+.+... +.. ..+...++..+.|..+
T Consensus 166 ~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 8889999988877776542 322 2234456677777443
No 382
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.77 E-value=1.4e-07 Score=106.44 Aligned_cols=191 Identities=18% Similarity=0.188 Sum_probs=119.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc---
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN--- 369 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~--- 369 (957)
+++.|-+...+.+.+.+... ...+.+|+|+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 6 ~~liG~S~~~~~~~~~i~~~----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~ 75 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRL----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDS 75 (326)
T ss_pred CccEECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHH
Confidence 56788888888777775443 1346789999999999999999998665 3589999998763211
Q ss_pred --cchh-------HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--c-------CCC
Q 002169 370 --YGES-------EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R-------TDG 431 (957)
Q Consensus 370 --~ge~-------e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--~-------~~~ 431 (957)
+|.. .......|+.+. ...|||||+|.+. ..+...|+..++.-. . ..+
T Consensus 76 ~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~ 141 (326)
T PRK11608 76 ELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP-----------MLVQEKLLRVIEYGELERVGGSQPLQVN 141 (326)
T ss_pred HHccccccccCCcccccCCchhccC---CCeEEeCChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeecc
Confidence 0100 000012233333 3589999999884 345566777775421 1 124
Q ss_pred eEEEEecCCC-------CCchhhhhCCCCcceeeeecCCCHHHHHH----HHHHHH----cCCC----CCCChHHHHHHH
Q 002169 432 VLVIAATNRP-------DSIEPALRRPGRLDREIEIAVPSPAQRLE----ILHALL----SGME----HSLLDSEVEYLS 492 (957)
Q Consensus 432 v~vI~ttN~~-------~~ld~al~r~gRfd~~I~i~~P~~~~r~~----Il~~~l----~~~~----~~l~~~~l~~La 492 (957)
+.+|++|+.. ..+.+.|.. ||. .+.|..|...+|.+ +++.++ .+++ ..+++..+..|.
T Consensus 142 ~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~ 218 (326)
T PRK11608 142 VRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLL 218 (326)
T ss_pred EEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 7888888753 123344444 443 25677777777744 333332 2222 246778888887
Q ss_pred HHcCCCcHHHHHHHHHHHHHH
Q 002169 493 MATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 493 ~~t~g~~gaDi~~l~~~A~~~ 513 (957)
.+.=.-+-++|+++++.|...
T Consensus 219 ~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 219 NYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred hCCCCcHHHHHHHHHHHHHHh
Confidence 776556678888888877553
No 383
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.76 E-value=2.3e-07 Score=101.63 Aligned_cols=176 Identities=16% Similarity=0.282 Sum_probs=105.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCC-cEEE---Eecc----cccc---cccc-----hh-H---HHHHHHH-HHHhccC
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGV-NLFT---VNGP----EVVS---QNYG-----ES-E---QALHEVF-DSASQSA 388 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~-~~i~---i~~~----~l~~---~~~g-----e~-e---~~i~~vf-~~a~~~~ 388 (957)
..++|+||+|+||||+++.++..+.. .+.. +++. ++.. ...| .. . ..+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999999998753 2221 1110 1000 0011 10 1 1122222 2233556
Q ss_pred CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-cCCCeEEEEecCCCCC---c----hhhhhCCCCcceeeee
Q 002169 389 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGVLVIAATNRPDS---I----EPALRRPGRLDREIEI 460 (957)
Q Consensus 389 p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-~~~~v~vI~ttN~~~~---l----d~al~r~gRfd~~I~i 460 (957)
+.+|+|||++.+.. .....|..+.+... ....+.|+++. .++. + ...+.+ |+...+++
T Consensus 124 ~~vliiDe~~~l~~-----------~~~~~l~~l~~~~~~~~~~~~vvl~g-~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 124 RALLVVDEAQNLTP-----------ELLEELRMLSNFQTDNAKLLQIFLVG-QPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred CeEEEEECcccCCH-----------HHHHHHHHHhCcccCCCCeEEEEEcC-CHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 78999999988732 11222222222111 12223344443 3221 1 123444 77777899
Q ss_pred cCCCHHHHHHHHHHHHcCCC----CCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 461 AVPSPAQRLEILHALLSGME----HSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 461 ~~P~~~~r~~Il~~~l~~~~----~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
+..+.++..+++...+...+ ..+++..++.+++.+.|.... |..+|..+...+..+...
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~~~~ 252 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLEEKR 252 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHcCCC
Confidence 99999999999998876543 357889999999999998654 999999998888765443
No 384
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.2e-08 Score=106.35 Aligned_cols=129 Identities=21% Similarity=0.359 Sum_probs=89.3
Q ss_pred cCCcHHHHHHHHHHHHhhhhh-hhh-hhcCCC-CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cccchh
Q 002169 298 LGGLSKEYAILKDIIISSSVK-STL-SSLGLR-PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYGES 373 (957)
Q Consensus 298 i~Gl~~~~~~l~e~i~~~~~~-~~~-~~l~i~-~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~~ge~ 373 (957)
+.|.+..|+.|.=.|-....+ ... .+-.+. ...+|||.||+|||||.||+.+|+.++.+|..-++..+.. .|+||.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 678888777665554333222 100 001111 2468999999999999999999999999999999888776 478876
Q ss_pred H-HHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhcc
Q 002169 374 E-QALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGV 426 (957)
Q Consensus 374 e-~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l 426 (957)
- ..+-.+++.|. .....|++|||||.++++..+.. +-....+...||.++++-
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 4 44556666543 22356999999999998765443 123456778899999884
No 385
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.76 E-value=5.6e-08 Score=111.92 Aligned_cols=196 Identities=21% Similarity=0.236 Sum_probs=128.0
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVV 366 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~ 366 (957)
...++|++|.|-.+...++.+.+.. .......|||+|.+||||..+|+++.+.. +.+|+.+||..+-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 3457889999999888777776422 23557789999999999999999999765 5689999996543
Q ss_pred ---------ccccchhHHH----HHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc-------
Q 002169 367 ---------SQNYGESEQA----LHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV------- 426 (957)
Q Consensus 367 ---------~~~~ge~e~~----i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l------- 426 (957)
+...|..... -..+|+.|..+ -||+|||..+ ...+...||..+..-
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecCC
Confidence 3222221111 23466666555 8999999665 456778888888752
Q ss_pred --ccCCCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHHHH--------HHHHcCCC---CCCChH
Q 002169 427 --CRTDGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLEIL--------HALLSGME---HSLLDS 486 (957)
Q Consensus 427 --~~~~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~Il--------~~~l~~~~---~~l~~~ 486 (957)
...-.+.||+|||+. +..++ ..|+|.+ ++.+..|...+|.+=+ +.+..+++ ..+++.
T Consensus 375 t~~~~vDVRIIAATN~n--L~~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRN--LEKMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcC--HHHHH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 112358999999973 33333 2355533 3566777777774322 22222222 235677
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHH
Q 002169 487 EVEYLSMATHGFVGADLAALCNEAAL 512 (957)
Q Consensus 487 ~l~~La~~t~g~~gaDi~~l~~~A~~ 512 (957)
.+..|..+.=.-+-++|++++..+..
T Consensus 452 a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 452 ALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 77777766544456888888877643
No 386
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.76 E-value=3.7e-09 Score=100.93 Aligned_cols=104 Identities=29% Similarity=0.444 Sum_probs=60.2
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC-Ccccc-ccc-----chHH----HHHHHHHHHHhCCCeEEEEeCCch
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAVKGP-ELFSK-WVG-----ESEK----AVRSLFAKARANAPSIIFFDEIDG 750 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~-~l~~~-~vg-----~~~~----~ir~~f~~A~~~~p~ILfiDEid~ 750 (957)
|+||.|+||+|||++|+++|+.++..|.+|.+. ++.-. ..| .... .-.-+| . .|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif----~---~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF----T---NILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-----S---SEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh----h---ceeeeccccc
Confidence 589999999999999999999999999999873 44221 011 0000 001112 1 3999999984
Q ss_pred hhhhcCCCCCCCcchHHHHHHHHHHHhcccc---------CCcEEEEEecCCCC-----CCChhhhCCCCc
Q 002169 751 LAAIRGKESDGVSVSDRVMSQLLVELDGLHQ---------RVNVTVIAATNRPD-----KIDPALLRPGRF 807 (957)
Q Consensus 751 l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~---------~~~v~VI~aTN~~~-----~id~aLlr~gRf 807 (957)
+..+++++||..|....- ....+||++-|..+ .+++|++. ||
T Consensus 74 -------------appktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 -------------APPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -------------S-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred -------------CCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 467788899999875321 23578888889776 47888887 77
No 387
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.75 E-value=4.1e-08 Score=113.50 Aligned_cols=149 Identities=19% Similarity=0.156 Sum_probs=88.7
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEec-----ccccccc-
Q 002169 298 LGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNG-----PEVVSQN- 369 (957)
Q Consensus 298 i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~~-----~~l~~~~- 369 (957)
+.|.+++++.+... +..+.+|||+||||||||++|++++...+. +|..+.+ .++++..
T Consensus 22 i~gre~vI~lll~a--------------alag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~ 87 (498)
T PRK13531 22 LYERSHAIRLCLLA--------------ALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLS 87 (498)
T ss_pred ccCcHHHHHHHHHH--------------HccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHH
Confidence 56666665554444 245789999999999999999999987643 3333322 2333221
Q ss_pred cchhHHHHHHHHHHHhcc---CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--------cCCCeEEEEec
Q 002169 370 YGESEQALHEVFDSASQS---APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--------RTDGVLVIAAT 438 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~---~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--------~~~~v~vI~tt 438 (957)
+... .-..-|.....+ ...+||+|||..+ .....+.|+..|.+-. .-.-.+++++|
T Consensus 88 i~~~--~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT 154 (498)
T PRK13531 88 IQAL--KDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS 154 (498)
T ss_pred Hhhh--hhcCchhhhcCCccccccEEeecccccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC
Confidence 0000 001122221111 2349999999755 3456778888884421 11123556666
Q ss_pred CCCCC---chhhhhCCCCcceeeeecCCC-HHHHHHHHHHH
Q 002169 439 NRPDS---IEPALRRPGRLDREIEIAVPS-PAQRLEILHAL 475 (957)
Q Consensus 439 N~~~~---ld~al~r~gRfd~~I~i~~P~-~~~r~~Il~~~ 475 (957)
|...+ ..+++.. ||-..+.+++|+ .++..+|+...
T Consensus 155 N~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 155 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 75432 3347777 897788999997 45667888753
No 388
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=6.7e-08 Score=108.77 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=97.4
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCCc-------------------------EEEEeCCCcc--------------
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGLN-------------------------FLAVKGPELF-------------- 717 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~-------------------------~i~v~~~~l~-------------- 717 (957)
-+.+.++||+||+|+||+++|+++|+.+... ++.+......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 3667889999999999999999999876331 2222111000
Q ss_pred ----cc----c-ccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCc
Q 002169 718 ----SK----W-VGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN 784 (957)
Q Consensus 718 ----~~----~-vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~ 784 (957)
++ . ..-.-..+|.+.+.+.. +...|++||++|.+ .....|.||..|+. +..+
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaLLKtLEE--Pp~~ 162 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-------------NVAAANALLKTLEE--PPPG 162 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-------------CHHHHHHHHHHhcC--CCcC
Confidence 00 0 01123466776665432 33469999999977 45667899999994 5668
Q ss_pred EEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHH
Q 002169 785 VTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIH 828 (957)
Q Consensus 785 v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~ 828 (957)
+++|.+|++++.+.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999999 88 68999999998888887653
No 389
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.74 E-value=1.2e-07 Score=114.18 Aligned_cols=195 Identities=23% Similarity=0.249 Sum_probs=122.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN 369 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~ 369 (957)
..++.+.|-+...+.+.+.+... .....+|||+|++||||+++|++|+... +.+|+.++|..+....
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~ 262 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL 262 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH
Confidence 45678899998888887775443 1346689999999999999999999875 4689999998763321
Q ss_pred c-----chhH-------HHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--c-------
Q 002169 370 Y-----GESE-------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R------- 428 (957)
Q Consensus 370 ~-----ge~e-------~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--~------- 428 (957)
. |... ..-...|+.+ ...+|||||++.+. ......|+..++.-. .
T Consensus 263 ~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~ 328 (534)
T TIGR01817 263 LESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS-----------PAFQAKLLRVLQEGEFERVGGNRTL 328 (534)
T ss_pred HHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC-----------HHHHHHHHHHHhcCcEEECCCCceE
Confidence 1 0000 0000112222 24599999999884 344566777775421 1
Q ss_pred CCCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHH----HHHHHHHHcC------CCCCCChHHHHHH
Q 002169 429 TDGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQR----LEILHALLSG------MEHSLLDSEVEYL 491 (957)
Q Consensus 429 ~~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r----~~Il~~~l~~------~~~~l~~~~l~~L 491 (957)
..++.+|++|+.. +...+ ..|+|.. .+.+..|...+| ..+++.++.. ....+++..++.|
T Consensus 329 ~~~~riI~~s~~~--l~~~~-~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 405 (534)
T TIGR01817 329 KVDVRLVAATNRD--LEEAV-AKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVL 405 (534)
T ss_pred eecEEEEEeCCCC--HHHHH-HcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 1247888888753 22222 2334422 245666665555 3344444332 2246788888888
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHH
Q 002169 492 SMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 492 a~~t~g~~gaDi~~l~~~A~~~a 514 (957)
..+.-.-+.++|+++++.|+..+
T Consensus 406 ~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 406 MSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred HhCCCCChHHHHHHHHHHHHHhC
Confidence 88765567789999888876543
No 390
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.74 E-value=8.9e-08 Score=113.91 Aligned_cols=194 Identities=21% Similarity=0.254 Sum_probs=119.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN 369 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~ 369 (957)
..|+++.|..+.++.+++.+... .....+|||+|++||||+++|+++.... +.+|+.+||..+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 56788999999888887776433 1235689999999999999999998754 5689999998764321
Q ss_pred c-----chh--------HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--c------
Q 002169 370 Y-----GES--------EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R------ 428 (957)
Q Consensus 370 ~-----ge~--------e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--~------ 428 (957)
. |.. ...-..+|+.|.. ..|||||++.|. ..+...|+..++.-. .
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp-----------~~~Q~~Ll~~L~~~~~~r~g~~~~ 344 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMP-----------LPLQTRLLRVLEEREVVRVGGTEP 344 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCC-----------HHHHHHHHHHHhcCcEEecCCCce
Confidence 1 100 0011234444433 489999999883 345566777775421 0
Q ss_pred -CCCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHH----HHHHHHcC----CCCCCChHHHHH--
Q 002169 429 -TDGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLE----ILHALLSG----MEHSLLDSEVEY-- 490 (957)
Q Consensus 429 -~~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~----Il~~~l~~----~~~~l~~~~l~~-- 490 (957)
..++.+|++||..- .. +...|+|.. .+.+..|...+|.+ ++..++.. ....+++..+..
T Consensus 345 ~~~dvRiIaat~~~l--~~-~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~ 421 (526)
T TIGR02329 345 VPVDVRVVAATHCAL--TT-AVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLA 421 (526)
T ss_pred eeecceEEeccCCCH--HH-HhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhH
Confidence 12357888887631 11 112223322 25677787777754 33333332 233456666555
Q ss_pred -----HHHHcCCCcHHHHHHHHHHHHHH
Q 002169 491 -----LSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 491 -----La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
|..+.-.-+-++|+++++.++..
T Consensus 422 ~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 422 GVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 55544444567888888877554
No 391
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=2.2e-07 Score=104.79 Aligned_cols=148 Identities=19% Similarity=0.234 Sum_probs=104.0
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCC------------------------cEEEEeCCCcccccccchHHHHHHHH
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGL------------------------NFLAVKGPELFSKWVGESEKAVRSLF 732 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------------------~~i~v~~~~l~~~~vg~~~~~ir~~f 732 (957)
-+.+..+||+||+|+||+++|.++|..+-. .++.+....- .. .-....+|.+.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHH
Confidence 356678999999999999999999987522 2222221100 00 11345667666
Q ss_pred HHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcc
Q 002169 733 AKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFD 808 (957)
Q Consensus 733 ~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd 808 (957)
+.+. .+...|++||++|.| .....|.||+.|+. +..++++|.+|+.++.+-|.+++ |+.
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m-------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq 160 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALL-------------TDAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR 160 (334)
T ss_pred HHHhhccccCCceEEEEcchHhh-------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc
Confidence 6554 344579999999977 45677899999995 56689999999999999999999 885
Q ss_pred eecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccC
Q 002169 809 RLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEG 849 (957)
Q Consensus 809 ~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g 849 (957)
.+.|++|+.++..+.+... .+.. ......+++.+.|
T Consensus 161 -~~~~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G 196 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLSRE---VTMS-QDALLAALRLSAG 196 (334)
T ss_pred -cccCCCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCC
Confidence 6899999988877766532 2322 2234456667777
No 392
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.73 E-value=1.3e-07 Score=113.19 Aligned_cols=194 Identities=24% Similarity=0.227 Sum_probs=124.7
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccccc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ 370 (957)
...++.|....++.+.+.+... ...+.+|||+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 3457889888888887776443 2346789999999999999999999875 46899999987643211
Q ss_pred -----chh-------HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc---------cC
Q 002169 371 -----GES-------EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---------RT 429 (957)
Q Consensus 371 -----ge~-------e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~---------~~ 429 (957)
|.. ...-...|+.|. ...|||||+|.+. ..+...|+..++.-. ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCccee
Confidence 100 000011344443 3489999999884 344566777765421 11
Q ss_pred CCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHH----HHHHHHc----C---CCCCCChHHHHHH
Q 002169 430 DGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLE----ILHALLS----G---MEHSLLDSEVEYL 491 (957)
Q Consensus 430 ~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~----Il~~~l~----~---~~~~l~~~~l~~L 491 (957)
.++.+|++||.. +... ...|+|.. .+.|..|...+|.+ +++.++. + ....+++..+..|
T Consensus 321 ~~~RiI~~t~~~--l~~~-~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 321 VDVRVIAATNRD--LREE-VRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred cceEEEEecCCC--HHHH-HHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 257899999764 2221 12233322 35677887777754 2222222 2 2345788888888
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHH
Q 002169 492 SMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 492 a~~t~g~~gaDi~~l~~~A~~~a 514 (957)
..+.=.-+.++|+++++.|+..+
T Consensus 398 ~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 398 LAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HhCCCCCcHHHHHHHHHHHHHhc
Confidence 88776667899999999887665
No 393
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=8.7e-08 Score=108.20 Aligned_cols=148 Identities=20% Similarity=0.267 Sum_probs=101.7
Q ss_pred ccccCC-cHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc-----------------
Q 002169 295 ISKLGG-LSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN----------------- 356 (957)
Q Consensus 295 ~~~i~G-l~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~----------------- 356 (957)
|+.|.| .+.+++.|+..+... +.+..+||+||+|+||+++|+++|+.+-+.
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~ 72 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRI 72 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHH
Confidence 345555 888888888885322 235567999999999999999999876321
Q ss_pred -------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhc
Q 002169 357 -------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 425 (957)
Q Consensus 357 -------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~ 425 (957)
+..+... +.. -.-..++.+.+.+. .....|++|||+|.+. ....+.|+..|++
T Consensus 73 ~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~LEE 136 (329)
T PRK08058 73 DSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----------ASAANSLLKFLEE 136 (329)
T ss_pred hcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----------HHHHHHHHHHhcC
Confidence 2222110 110 11234555554432 2345799999998873 3455679999987
Q ss_pred cccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHH
Q 002169 426 VCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHA 474 (957)
Q Consensus 426 l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~ 474 (957)
..+++++|++|+.++.+.|.+++ |. ..++|..|+.++..++++.
T Consensus 137 --Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 --PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred --CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 45678888899999999999999 65 3489999999988777753
No 394
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.71 E-value=8.9e-08 Score=108.87 Aligned_cols=195 Identities=25% Similarity=0.295 Sum_probs=129.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc-
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ- 368 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~- 368 (957)
.+...|+|..+.+.++.+.|+.. ......|||.|.+||||-.+||+|.... +.+|+.+||..+-..
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~V----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesL 289 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVV----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESL 289 (550)
T ss_pred cccccceecCHHHHHHHHHHHHH----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHH
Confidence 35567899999988888887655 3446689999999999999999999766 568999999765332
Q ss_pred --------ccchhHHH---HHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--cc-------
Q 002169 369 --------NYGESEQA---LHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CR------- 428 (957)
Q Consensus 369 --------~~ge~e~~---i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~~------- 428 (957)
.-|..... -+..|+.|..+ -||+|||..| .-.+...|+..+..- ++
T Consensus 290 lESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 290 LESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred HHHHHhcccccccccchhccCcceeecCCC---eEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCcee
Confidence 22211111 12234444444 8999999665 345667777777542 11
Q ss_pred CCCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHH--------HHHHHHcCC---CCCCChHHHHH
Q 002169 429 TDGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLE--------ILHALLSGM---EHSLLDSEVEY 490 (957)
Q Consensus 429 ~~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~--------Il~~~l~~~---~~~l~~~~l~~ 490 (957)
.-.|.||++||+ ++..+++ .|+|.. ++-+.+|...+|.+ .++.....+ ...++...++.
T Consensus 356 kVDVRiIAATNR--DL~~~V~-~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~ 432 (550)
T COG3604 356 KVDVRVIAATNR--DLEEMVR-DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALEL 432 (550)
T ss_pred EEEEEEEeccch--hHHHHHH-cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHH
Confidence 124899999997 3444444 355532 24556676666632 112222222 44567888888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 491 LSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 491 La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
|....-.-+-++++++++.|+..|
T Consensus 433 L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 433 LSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHh
Confidence 887765557799999999998877
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=6.8e-07 Score=101.91 Aligned_cols=113 Identities=16% Similarity=0.233 Sum_probs=71.1
Q ss_pred HHHHhcCC--CCCCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCCC----c------------------ccccccc
Q 002169 670 EAFKRIGT--RPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPE----L------------------FSKWVGE 723 (957)
Q Consensus 670 ~~~~~l~~--~~~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~----l------------------~~~~vg~ 723 (957)
.++.+++. .....+...|++|.||+|+.|.+..++. ..++.+...- + ...+.|.
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~ 457 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK 457 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC
Confidence 45555543 3445599999999999999999987653 1122211100 0 0001121
Q ss_pred ---------------------------hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHH
Q 002169 724 ---------------------------SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 776 (957)
Q Consensus 724 ---------------------------~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~l 776 (957)
..++.|.+|+.+.-+.|-+|+|||+...++ ...+.+|-..|
T Consensus 458 ~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD------------~dsl~AL~~Al 525 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLD------------RDSLGALAKAL 525 (582)
T ss_pred CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcccc------------HHHHHHHHHHH
Confidence 133458899999999999999999986543 34455666666
Q ss_pred hccccCCcEEEEEecCCCCCCC
Q 002169 777 DGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 777 d~~~~~~~v~VI~aTN~~~~id 798 (957)
..+.. -||+.||+.+.++
T Consensus 526 ~~F~G----GVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 526 KNFNG----GVVLVSHDEEFIS 543 (582)
T ss_pred HhcCC----cEEEEECcHHHHh
Confidence 65433 2777888776653
No 396
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.70 E-value=2.9e-07 Score=114.11 Aligned_cols=193 Identities=22% Similarity=0.277 Sum_probs=123.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN 369 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~ 369 (957)
..++++.|....++.+.+.+... .....+|||+|++|||||++|+++.... +.+|+.++|..+....
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 45667888888888777665432 1345689999999999999999998754 5689999998763321
Q ss_pred -----cc--------hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc---------
Q 002169 370 -----YG--------ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--------- 427 (957)
Q Consensus 370 -----~g--------e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--------- 427 (957)
.| ...... ..|+.+. ..+|||||++.+. ..+...|+..++.-.
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~-g~le~a~---~GtL~Ldei~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRI-GRFELAD---KSSLFLDEVGDMP-----------LELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred hhhhhcCcccccccccccchh-hHHHhcC---CCeEEEechhhCC-----------HHHHHHHHHHHHhCCEEeCCCCCc
Confidence 11 111111 2344443 3599999999873 345566777775421
Q ss_pred cCCCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHH----HHHHHHcC----CC---CCCChHHHH
Q 002169 428 RTDGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLE----ILHALLSG----ME---HSLLDSEVE 489 (957)
Q Consensus 428 ~~~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~----Il~~~l~~----~~---~~l~~~~l~ 489 (957)
...++.+|++|+.. +.. +...|+|.. .+.|..|...+|.+ +++.++.+ ++ ..+++..++
T Consensus 508 ~~~~~RiI~~t~~~--l~~-~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 508 IQTDVRLIAATNRD--LKK-MVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred ccceEEEEEeCCCC--HHH-HHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 12357889998763 111 111223332 35678888887754 23333322 22 236788888
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHH
Q 002169 490 YLSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 490 ~La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
.|..+.-.-+.++|+++++.|+..
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHh
Confidence 888776666778999999887654
No 397
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.69 E-value=1e-06 Score=93.38 Aligned_cols=176 Identities=16% Similarity=0.241 Sum_probs=118.9
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-C--CcEEEEeCCCc---
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-G--LNFLAVKGPEL--- 716 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-~--~~~i~v~~~~l--- 716 (957)
..++.+.+.++....++.... -..-.++++|||+|+||-|.+.++-+++ | .+=..+....+
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~-------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tp 76 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS-------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTP 76 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc-------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecC
Confidence 345556677777766655442 1223579999999999999999998876 2 11111111000
Q ss_pred ----------cc--------ccccchHH-HHHHHHHHHHhCCC---------eEEEEeCCchhhhhcCCCCCCCcchHHH
Q 002169 717 ----------FS--------KWVGESEK-AVRSLFAKARANAP---------SIIFFDEIDGLAAIRGKESDGVSVSDRV 768 (957)
Q Consensus 717 ----------~~--------~~vg~~~~-~ir~~f~~A~~~~p---------~ILfiDEid~l~~~r~~~~~~~~~~~~v 768 (957)
.+ ...|..++ -+.++++.+-+.+| .+++|-|+|.+. ...
T Consensus 77 S~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT-------------~dA 143 (351)
T KOG2035|consen 77 SKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT-------------RDA 143 (351)
T ss_pred CCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-------------HHH
Confidence 00 11233333 34666666555443 699999999773 445
Q ss_pred HHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHc
Q 002169 769 MSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLS 847 (957)
Q Consensus 769 ~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t 847 (957)
+.+|-+.|+... .+..+|..+|....|-+++.+ |+ -.|.+|.|+.++...++...+.+.++.-. .-+..+|+.+
T Consensus 144 Q~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 144 QHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHHHHHHHHh--cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 556777777653 467889999999999999998 76 57889999999999999999988776533 3356677777
Q ss_pred cC
Q 002169 848 EG 849 (957)
Q Consensus 848 ~g 849 (957)
.|
T Consensus 219 ~~ 220 (351)
T KOG2035|consen 219 NR 220 (351)
T ss_pred cc
Confidence 66
No 398
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.69 E-value=3.9e-07 Score=104.38 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=26.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHH
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~ 352 (957)
+.+.+++.+.|+||.|+||||+.++++..
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcC
Confidence 56778999999999999999999999954
No 399
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.69 E-value=4.2e-07 Score=110.06 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=28.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|.||+|+|||||++++++.+
T Consensus 27 s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 27 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999875
No 400
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.69 E-value=3.9e-08 Score=100.14 Aligned_cols=131 Identities=24% Similarity=0.362 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccccc-----
Q 002169 299 GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY----- 370 (957)
Q Consensus 299 ~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~----- 370 (957)
.|-++.++.+.+.+... ...+.+|||+|++||||+++|+++.+.. +.+|+.|+|..+.....
T Consensus 2 iG~s~~m~~~~~~~~~~----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LF 71 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRA----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELF 71 (168)
T ss_dssp S--SHHHHHHHHHHHHH----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHH----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhh
Confidence 45555555555554332 1335789999999999999999999865 46899999987633211
Q ss_pred chh-------HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--c-------cCCCeEE
Q 002169 371 GES-------EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--C-------RTDGVLV 434 (957)
Q Consensus 371 ge~-------e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~-------~~~~v~v 434 (957)
|.. ...-..+|+.|... +||||||+.|. ..+...|+..|+.- . ..-++.+
T Consensus 72 G~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 137 (168)
T PF00158_consen 72 GHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLP-----------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRI 137 (168)
T ss_dssp EBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEE
T ss_pred ccccccccccccccCCceeeccce---EEeecchhhhH-----------HHHHHHHHHHHhhchhccccccccccccceE
Confidence 110 01112466666555 99999999883 45667788888742 1 1236899
Q ss_pred EEecCCCCCchhhhhCCCCcce
Q 002169 435 IAATNRPDSIEPALRRPGRLDR 456 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~ 456 (957)
|++|+. .+...+. .|+|..
T Consensus 138 I~st~~--~l~~~v~-~g~fr~ 156 (168)
T PF00158_consen 138 IASTSK--DLEELVE-QGRFRE 156 (168)
T ss_dssp EEEESS---HHHHHH-TTSS-H
T ss_pred EeecCc--CHHHHHH-cCCChH
Confidence 999985 3444433 456643
No 401
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.68 E-value=1.8e-08 Score=104.48 Aligned_cols=47 Identities=38% Similarity=0.450 Sum_probs=35.2
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
+|.+|.|++..|..|.-.. .| +.++||+||||||||++|+.+...+.
T Consensus 1 Df~dI~GQe~aKrAL~iAA-----------aG---~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAA-----------AG---GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHH-----------HC---C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred ChhhhcCcHHHHHHHHHHH-----------cC---CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 3678999999888876552 23 46999999999999999999997763
No 402
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.68 E-value=4.2e-07 Score=101.91 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=46.1
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCC-CCCCeEEEEcCCCChHHHHHHHHHHHcCC-------cEEEEec
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGL-RPTKGVLLHGPPGTGKTSLARLCAHDSGV-------NLFTVNG 362 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i-~~~~~vLL~GppGtGKTtLaralA~~l~~-------~~i~i~~ 362 (957)
++.|+++.++++.+.+.... .|. ...+.++|+|||||||||||++|++.++. +++.+.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a-------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA-------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH-------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 78999999888887764442 122 24577899999999999999999998866 6676665
No 403
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.68 E-value=1.2e-07 Score=103.12 Aligned_cols=233 Identities=18% Similarity=0.238 Sum_probs=144.8
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELF 717 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~ 717 (957)
+...|+.+++.....+.+.+.... +. .....+|+.|.+||||-++||+-...+ ..||+.++|..+-
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k-------~A----mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQK-------LA----MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHH-------hh----ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 445677777777666655443211 11 123459999999999999999987654 6799999997653
Q ss_pred ---------cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------
Q 002169 718 ---------SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------- 780 (957)
Q Consensus 718 ---------~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-------- 780 (957)
+.-.| .+.-..+|+.|.++ .+|+|||..+ +.+++..||..+..-.
T Consensus 268 e~~aEsElFG~apg--~~gk~GffE~AngG---TVlLDeIgEm-------------Sp~lQaKLLRFL~DGtFRRVGee~ 329 (511)
T COG3283 268 EDAAESELFGHAPG--DEGKKGFFEQANGG---TVLLDEIGEM-------------SPRLQAKLLRFLNDGTFRRVGEDH 329 (511)
T ss_pred hhHhHHHHhcCCCC--CCCccchhhhccCC---eEEeehhhhc-------------CHHHHHHHHHHhcCCceeecCCcc
Confidence 22222 23446789999888 8999999855 5677788888886421
Q ss_pred -cCCcEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHHHH--------HHHHHHHhcCCCCC-ccc---H
Q 002169 781 -QRVNVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETDRE--------EIFRIHLRKIPCSS-DVN---I 840 (957)
Q Consensus 781 -~~~~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~er~--------~Il~~~l~~~~~~~-~~~---l 840 (957)
...+|.||+||..+-. .+...|+|.. ++.+..|...+|. .++..+..+.+... ..+ +
T Consensus 330 Ev~vdVRVIcatq~nL~---~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~ 406 (511)
T COG3283 330 EVHVDVRVICATQVNLV---ELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLL 406 (511)
T ss_pred eEEEEEEEEecccccHH---HHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHH
Confidence 1247999999986633 3444456554 3334556665553 34455555555442 222 2
Q ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC-----chHHHHHHHHHHHHHhcCc
Q 002169 841 RELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS-----EIHSYKELSAKFQRLVHSN 910 (957)
Q Consensus 841 ~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~-----~~~~y~~~~~~~~~~v~~~ 910 (957)
..|.+...-=+.+++.+.+-+|+... +...++.+++.-+-....+. ....+.++...|++++...
T Consensus 407 ~~L~~y~WpGNVRqL~N~iyRA~s~~-----Eg~~l~i~~i~Lp~~~~~~~~~~~~~~gsLdei~~~fE~~VL~r 476 (511)
T COG3283 407 TVLTRYAWPGNVRQLKNAIYRALTLL-----EGYELRIEDILLPDYDAATVVGEDALEGSLDEIVSRFERSVLTR 476 (511)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHHh-----ccCccchhhcccCCcccccccchhhccCCHHHHHHHHHHHHHHH
Confidence 33333322225789999988887654 34456666665433322222 3346677777777776543
No 404
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.67 E-value=3.7e-07 Score=110.52 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=28.0
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|.||+|+|||||++++++..
T Consensus 25 s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 25 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3677889999999999999999999999875
No 405
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.67 E-value=2e-07 Score=113.94 Aligned_cols=155 Identities=23% Similarity=0.342 Sum_probs=96.0
Q ss_pred ccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC--------------------
Q 002169 295 ISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-------------------- 354 (957)
Q Consensus 295 ~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-------------------- 354 (957)
|..|.|.+..+..+.-....+ ...+|||.|++|||||++|++++..+.
T Consensus 3 f~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 567899998876664442211 124699999999999999999998872
Q ss_pred ---------------CcEEEEecccccccccchh--HHHHH---HHHHH--HhccCCeEEEEcCccccccCCcCCCchHH
Q 002169 355 ---------------VNLFTVNGPEVVSQNYGES--EQALH---EVFDS--ASQSAPAVVFIDELDAIAPARKDGGEELS 412 (957)
Q Consensus 355 ---------------~~~i~i~~~~l~~~~~ge~--e~~i~---~vf~~--a~~~~p~IL~IDEiD~l~~~~~~~~~~~~ 412 (957)
.+|+.+.+.......+|.. +..++ ..++. .......||||||++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~----------- 139 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD----------- 139 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC-----------
Confidence 3444444332211112211 11110 00100 001123599999998873
Q ss_pred HHHHHHHHHHhhcc----c-------cCCCeEEEEecCCCC-CchhhhhCCCCcceeeeecCCC-HHHHHHHHHH
Q 002169 413 QRMVATLLNLMDGV----C-------RTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIAVPS-PAQRLEILHA 474 (957)
Q Consensus 413 ~~i~~~Ll~~ld~l----~-------~~~~v~vI~ttN~~~-~ld~al~r~gRfd~~I~i~~P~-~~~r~~Il~~ 474 (957)
..++..|+..|+.- . ...++.+|+++|+.+ .+.++|.. ||+..+.++.+. .+++.++++.
T Consensus 140 ~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 140 DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 45567788887631 1 123589999998643 67888988 998888887764 5666777654
No 406
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.66 E-value=8.1e-07 Score=94.12 Aligned_cols=174 Identities=18% Similarity=0.240 Sum_probs=125.0
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-CC--c-------------
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-GV--N------------- 356 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-~~--~------------- 356 (957)
.+++.+.+.++....++.... -..-.|+++|||+|+||-|.+.++-+++ |. +
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 345566677776666666521 0112589999999999999999998776 31 1
Q ss_pred -------------EEEEecccccccccchh-HHHHHHHHHHHhccC---------CeEEEEcCccccccCCcCCCchHHH
Q 002169 357 -------------LFTVNGPEVVSQNYGES-EQALHEVFDSASQSA---------PAVVFIDELDAIAPARKDGGEELSQ 413 (957)
Q Consensus 357 -------------~i~i~~~~l~~~~~ge~-e~~i~~vf~~a~~~~---------p~IL~IDEiD~l~~~~~~~~~~~~~ 413 (957)
.++++.++ .|-. +-.+.++++...+.+ -.+++|-|+|.|. +
T Consensus 78 ~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT-----------~ 141 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT-----------R 141 (351)
T ss_pred CceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh-----------H
Confidence 02222222 2322 234555555443332 3699999999884 4
Q ss_pred HHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHH
Q 002169 414 RMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSM 493 (957)
Q Consensus 414 ~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~ 493 (957)
.....|...|+.+. ++..+|..+|....+-+++++ |.- .|.++-|+.++...++...+.+.++.++...+..+|+
T Consensus 142 dAQ~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~ 216 (351)
T KOG2035|consen 142 DAQHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAE 216 (351)
T ss_pred HHHHHHHHHHHHHh--cCceEEEEecCcccchhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence 45667888888874 467889999999999999999 542 3889999999999999999999999999988999999
Q ss_pred HcCCCc
Q 002169 494 ATHGFV 499 (957)
Q Consensus 494 ~t~g~~ 499 (957)
.+.|--
T Consensus 217 kS~~nL 222 (351)
T KOG2035|consen 217 KSNRNL 222 (351)
T ss_pred HhcccH
Confidence 887643
No 407
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.66 E-value=3.4e-07 Score=112.75 Aligned_cols=194 Identities=21% Similarity=0.249 Sum_probs=121.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc-
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ- 368 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~- 368 (957)
..|+++.|.+.....+.+.+... .....+|||+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQA----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 45778889888777776664332 1345679999999999999999999865 468999999876321
Q ss_pred ----ccchh----HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--ccC-------CC
Q 002169 369 ----NYGES----EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CRT-------DG 431 (957)
Q Consensus 369 ----~~ge~----e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~~~-------~~ 431 (957)
..|.. .......|+.| ...+|||||++.+. ..+...|+..++.- ... -+
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 457 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS-----------PELQSALLQVLKTGVITRLDSRRLIPVD 457 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceEEee
Confidence 11100 00000123322 34589999999884 34455677776542 111 14
Q ss_pred eEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHH----HHHHHHcC------CCCCCChHHHHHHHHH
Q 002169 432 VLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLE----ILHALLSG------MEHSLLDSEVEYLSMA 494 (957)
Q Consensus 432 v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~----Il~~~l~~------~~~~l~~~~l~~La~~ 494 (957)
+.+|++|+.. +.. +...|+|.. .+.+.+|...+|.+ +++.++.. ....+++..++.|..+
T Consensus 458 ~riI~~t~~~--l~~-~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y 534 (638)
T PRK11388 458 VRVIATTTAD--LAM-LVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY 534 (638)
T ss_pred EEEEEeccCC--HHH-HHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC
Confidence 6789888753 222 222244422 36677888777743 33333322 1345688888888887
Q ss_pred cCCCcHHHHHHHHHHHHHH
Q 002169 495 THGFVGADLAALCNEAALV 513 (957)
Q Consensus 495 t~g~~gaDi~~l~~~A~~~ 513 (957)
.=.-+.++|+++++.|...
T Consensus 535 ~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 535 RWPGNDFELRSVIENLALS 553 (638)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 6555678899888877543
No 408
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.66 E-value=2.2e-07 Score=98.18 Aligned_cols=31 Identities=35% Similarity=0.495 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.|.|.||+|||||||.+++|+..
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999765
No 409
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=3.6e-07 Score=101.29 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=26.0
Q ss_pred cCCCCCCcceeeCCCCChhhHHHHHHHHHh
Q 002169 675 IGTRPPTGILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 675 l~~~~~~giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
+|+.....|.++||+|+||+|+.+.+.+.+
T Consensus 608 FGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 608 FGIDMDSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred ccccccceeEEECCCCccHHHHHHHHhcCC
Confidence 467777789999999999999999998664
No 410
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=6.4e-07 Score=100.01 Aligned_cols=130 Identities=15% Similarity=0.228 Sum_probs=95.6
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------------------cEEEEeCCCcccccccchHHHHHHHHH
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGL-----------------------NFLAVKGPELFSKWVGESEKAVRSLFA 733 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~-----------------------~~i~v~~~~l~~~~vg~~~~~ir~~f~ 733 (957)
-+.+..+||.||.|+||+++|+++|..+-. +|+.+...+ -++. -....+|.+.+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHH
Confidence 355678999999999999999999986521 233332211 0111 13445676665
Q ss_pred HHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcce
Q 002169 734 KARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 734 ~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~ 809 (957)
.+.. +...|++||++|.+ .....|.||+.|+. +..++++|.+|+.++.+-|.+++ |+ .
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m-------------~~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RC-q 160 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAM-------------NESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RC-Q 160 (319)
T ss_pred HHhhCcccCCceEEEecchhhh-------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cc-e
Confidence 5533 33579999999977 45667889999995 45689999999999999999999 87 4
Q ss_pred ecccCCCCHHHHHHHHHH
Q 002169 810 LLYVGPPNETDREEIFRI 827 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~~ 827 (957)
.+.|++|+.++..+.+..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEeCCCCCHHHHHHHHHH
Confidence 889999999888777654
No 411
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.64 E-value=3.1e-07 Score=93.08 Aligned_cols=132 Identities=26% Similarity=0.415 Sum_probs=87.5
Q ss_pred CcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------------c
Q 002169 300 GLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV-----------------------N 356 (957)
Q Consensus 300 Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~-----------------------~ 356 (957)
|.+.+++.|.+.+... +.+..+||+||+|+||+++|+++|..+-. .
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 5677777777775322 33567899999999999999999977621 2
Q ss_pred EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCe
Q 002169 357 LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGV 432 (957)
Q Consensus 357 ~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v 432 (957)
++.+....-.. . -....++.+.+.+. .....|++|||+|.+. ....+.|+..|++. ..++
T Consensus 70 ~~~~~~~~~~~-~--i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LEep--p~~~ 133 (162)
T PF13177_consen 70 FIIIKPDKKKK-S--IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLEEP--PENT 133 (162)
T ss_dssp EEEEETTTSSS-S--BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHST--TTTE
T ss_pred eEEEecccccc-h--hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhcCC--CCCE
Confidence 34443322100 0 12345666666543 2346799999999883 45678899999984 5689
Q ss_pred EEEEecCCCCCchhhhhCCCCcceeeeec
Q 002169 433 LVIAATNRPDSIEPALRRPGRLDREIEIA 461 (957)
Q Consensus 433 ~vI~ttN~~~~ld~al~r~gRfd~~I~i~ 461 (957)
.+|++|+.++.+.|.+++ |.- .+.|+
T Consensus 134 ~fiL~t~~~~~il~TI~S--Rc~-~i~~~ 159 (162)
T PF13177_consen 134 YFILITNNPSKILPTIRS--RCQ-VIRFR 159 (162)
T ss_dssp EEEEEES-GGGS-HHHHT--TSE-EEEE-
T ss_pred EEEEEECChHHChHHHHh--hce-EEecC
Confidence 999999999999999999 763 25554
No 412
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.64 E-value=2.3e-07 Score=110.99 Aligned_cols=195 Identities=21% Similarity=0.230 Sum_probs=119.5
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ 368 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~ 368 (957)
...|+++.|.+...+.+.+.+... .....+|+|+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 457888999998777766664322 1235679999999999999999987654 358999999876432
Q ss_pred cc-----chhH-------HHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--cc------
Q 002169 369 NY-----GESE-------QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CR------ 428 (957)
Q Consensus 369 ~~-----ge~e-------~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~~------ 428 (957)
.. |... ..-..+|+.|. ...|||||+|.+. ..+...|+..++.- ..
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~ 335 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMS-----------PRMQAKLLRFLNDGTFRRVGEDHE 335 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCC-----------HHHHHHHHHHHhcCCcccCCCCcc
Confidence 11 1000 00112344443 3489999999884 34445677776542 11
Q ss_pred -CCCeEEEEecCCCC-C------chhhhhCCCCcceeeeecCCCHHHHHH-H---HHHH----HcCC---CCCCChHHHH
Q 002169 429 -TDGVLVIAATNRPD-S------IEPALRRPGRLDREIEIAVPSPAQRLE-I---LHAL----LSGM---EHSLLDSEVE 489 (957)
Q Consensus 429 -~~~v~vI~ttN~~~-~------ld~al~r~gRfd~~I~i~~P~~~~r~~-I---l~~~----l~~~---~~~l~~~~l~ 489 (957)
..++.||++|+..- . +.+.|.. |+.. +.+..|...+|.+ | ++.+ ..+. ...+++..++
T Consensus 336 ~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~-~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~ 412 (520)
T PRK10820 336 VHVDVRVICATQKNLVELVQKGEFREDLYY--RLNV-LTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNT 412 (520)
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCe-eEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 12467888886531 1 2233333 4332 6677777777753 2 2222 2222 2356777788
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHH
Q 002169 490 YLSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 490 ~La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
.|..+.-.-+-++|++++..|...
T Consensus 413 ~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 413 VLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHh
Confidence 877665555668888888777554
No 413
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=3.2e-07 Score=103.06 Aligned_cols=132 Identities=20% Similarity=0.261 Sum_probs=95.0
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCC-------------------------cEEEEeCCCc---cccc-ccchHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGL-------------------------NFLAVKGPEL---FSKW-VGESEKAV 728 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~-------------------------~~i~v~~~~l---~~~~-vg~~~~~i 728 (957)
+.+..+||+||+|+|||++|+++|+.+.. .|+.+....- -++. ..-....+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 56677999999999999999999987532 3444433110 0000 01135667
Q ss_pred HHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCC
Q 002169 729 RSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRP 804 (957)
Q Consensus 729 r~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~ 804 (957)
|.+.+.+.. +...|+++|+++.+ .....+.++..|+... .++++|++||+++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-------------d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S- 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-------------NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS- 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-------------CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH-
Confidence 888777754 33469999999866 4556678888888653 357788899999999999998
Q ss_pred CCcceecccCCCCHHHHHHHHHH
Q 002169 805 GRFDRLLYVGPPNETDREEIFRI 827 (957)
Q Consensus 805 gRfd~~i~~~~P~~~er~~Il~~ 827 (957)
|+ ..+.|++|+.++..+.+..
T Consensus 163 -Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 -RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred -Hh-hhhcCCCCCHHHHHHHHHh
Confidence 87 5888999999887777654
No 414
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.2e-07 Score=105.44 Aligned_cols=97 Identities=28% Similarity=0.454 Sum_probs=75.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc-ccchh-HHHHHHHHHHHh----ccCCeEEEEcCcccccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ-NYGES-EQALHEVFDSAS----QSAPAVVFIDELDAIAP 402 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~-~~ge~-e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~ 402 (957)
..+|||.||+|+|||.||+.||+.++.+|...+|..+... |+||- |..|..+++.|. ..+..|+||||+|.|..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 4579999999999999999999999999999999988764 77764 667777877654 23456999999999985
Q ss_pred CCcCCC---chHHHHHHHHHHHHhhc
Q 002169 403 ARKDGG---EELSQRMVATLLNLMDG 425 (957)
Q Consensus 403 ~~~~~~---~~~~~~i~~~Ll~~ld~ 425 (957)
....-. +-...-+...||.++++
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 433211 11234567778999887
No 415
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.62 E-value=1.5e-06 Score=92.76 Aligned_cols=130 Identities=22% Similarity=0.318 Sum_probs=86.0
Q ss_pred CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC------------CCCCChhhhCCCCc
Q 002169 740 PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR------------PDKIDPALLRPGRF 807 (957)
Q Consensus 740 p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~------------~~~id~aLlr~gRf 807 (957)
|.||||||+|.|-- +-++-|=..+++ ..--++|+|||+ |+-|+-.++. |.
T Consensus 289 pGVLFIDEvHMLDI-------------EcFsFlNrAlE~---d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~ 350 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDI-------------ECFSFLNRALEN---DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM 350 (454)
T ss_pred cceEEEeeehhhhh-------------HHHHHHHHHhhh---ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh
Confidence 77999999996621 112222222331 112356677775 4456777777 65
Q ss_pred ceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002169 808 DRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 808 d~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~ 886 (957)
.+|.-.+++.++..+||++.+....+.-+ ..++.|......-+-+-..+++.-|.+.++++. ...+..+|++.+..
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk--~~~v~~~di~r~y~ 427 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK--GKVVEVDDIERVYR 427 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc--CceeehhHHHHHHH
Confidence 46777889999999999999977655432 335556666555556666778888888888876 67788899998877
Q ss_pred hhCC
Q 002169 887 HVQP 890 (957)
Q Consensus 887 ~~~p 890 (957)
-...
T Consensus 428 LFlD 431 (454)
T KOG2680|consen 428 LFLD 431 (454)
T ss_pred HHhh
Confidence 6553
No 416
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.62 E-value=2.4e-07 Score=109.41 Aligned_cols=174 Identities=21% Similarity=0.248 Sum_probs=101.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC----cEEEEecc-cccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----NLFTVNGP-EVVS 367 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~----~~i~i~~~-~l~~ 367 (957)
.+|+++.|....++.+.-. +..+.+++|+||||||||+++++++..+.. .++.+..- ++.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~a--------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA--------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh--------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 3677888888775543322 345678999999999999999999975521 11111110 0000
Q ss_pred -----------------------cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhh
Q 002169 368 -----------------------QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 424 (957)
Q Consensus 368 -----------------------~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld 424 (957)
..+|.....-...+..|. ..+|||||++.+. ..++..|++.|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~-----------~~~~~~L~~~LE 320 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFK-----------RSVLDALREPIE 320 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCC-----------HHHHHHHHHHHH
Confidence 000100000001222332 3599999998763 355666777775
Q ss_pred ccc-----------cCCCeEEEEecCCC-----C------------------CchhhhhCCCCcceeeeecCCCHHHHHH
Q 002169 425 GVC-----------RTDGVLVIAATNRP-----D------------------SIEPALRRPGRLDREIEIAVPSPAQRLE 470 (957)
Q Consensus 425 ~l~-----------~~~~v~vI~ttN~~-----~------------------~ld~al~r~gRfd~~I~i~~P~~~~r~~ 470 (957)
.-. ...++.+|+++|+. . .+...++. |||-.+.++.++..+.
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l-- 396 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKL-- 396 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHH--
Confidence 421 12468999999963 1 36666777 8988888887765421
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 471 ILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYS 519 (957)
Q Consensus 471 Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~ 519 (957)
.+...+-+.++++.-+.+|......|+.
T Consensus 397 ---------------------~~~~~~e~s~~ir~rV~~Ar~~q~~R~~ 424 (499)
T TIGR00368 397 ---------------------LSTGSGESSAEVKQRVIKAREIQNIRYE 424 (499)
T ss_pred ---------------------hccCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 1112234556777777777666666654
No 417
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.62 E-value=1.7e-07 Score=108.17 Aligned_cols=194 Identities=22% Similarity=0.283 Sum_probs=125.5
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc--
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ-- 368 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~-- 368 (957)
....+.|....++++++.+... .....+|||+|++||||-++||+|.... +.+|+.+||..+...
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ 208 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLL 208 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHH
Confidence 3567889999999988886433 2345679999999999999999999766 459999999765332
Q ss_pred -------ccchhH---HHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--c-------cC
Q 002169 369 -------NYGESE---QALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--C-------RT 429 (957)
Q Consensus 369 -------~~ge~e---~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~-------~~ 429 (957)
.-|... ..-...|+.|..+ .||||||..+ ...+...|+..+..- . ..
T Consensus 209 ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~i~ 274 (464)
T COG2204 209 ESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKPIK 274 (464)
T ss_pred HHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcccc
Confidence 111111 1112355666555 9999999766 355667788877642 1 12
Q ss_pred CCeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHHH----HHHHHHc----CC---CCCCChHHHHHH
Q 002169 430 DGVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRLE----ILHALLS----GM---EHSLLDSEVEYL 491 (957)
Q Consensus 430 ~~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~~----Il~~~l~----~~---~~~l~~~~l~~L 491 (957)
-++.||++||+. +...+. .|||.. ++.+..|...+|.+ +++.++. .. ...+++..+..|
T Consensus 275 vdvRiIaaT~~d--L~~~v~-~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 275 VDVRIIAATNRD--LEEEVA-AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL 351 (464)
T ss_pred eeeEEEeecCcC--HHHHHH-cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 258899999863 333332 345533 46788888888754 2233322 22 234566677766
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHH
Q 002169 492 SMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 492 a~~t~g~~gaDi~~l~~~A~~~a 514 (957)
..+.=.-+-++|+++++.++..+
T Consensus 352 ~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 352 LAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred HhCCCChHHHHHHHHHHHHHhcC
Confidence 65544445578888888775544
No 418
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=1.2e-06 Score=98.13 Aligned_cols=147 Identities=17% Similarity=0.214 Sum_probs=99.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCC------------------------cEEEEecccccccccchhHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGV------------------------NLFTVNGPEVVSQNYGESEQALHEVFDS 383 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~------------------------~~i~i~~~~l~~~~~ge~e~~i~~vf~~ 383 (957)
.+..+||+||+|+||+++|+++|+.+-+ .++.+...+ ++.+ .-..+|++.+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHHH
Confidence 3557999999999999999999987632 122222110 1111 23345555444
Q ss_pred H----hccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeee
Q 002169 384 A----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIE 459 (957)
Q Consensus 384 a----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~ 459 (957)
+ ..+...|++||++|.+. ....+.|++.|++ ...++++|.+|+.++.+.|.+++ |. ..+.
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~-----------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~ 162 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLT-----------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTWL 162 (325)
T ss_pred HhhccccCCceEEEEechhhhC-----------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEEe
Confidence 3 23445799999999884 3456789999998 56788999999999999999999 76 3488
Q ss_pred ecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCc
Q 002169 460 IAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 499 (957)
Q Consensus 460 i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ 499 (957)
|..|+.++..+.+..... ..+.....++..+.|-.
T Consensus 163 ~~~~~~~~~~~~L~~~~~-----~~~~~~~~~~~l~~g~p 197 (325)
T PRK06871 163 IHPPEEQQALDWLQAQSS-----AEISEILTALRINYGRP 197 (325)
T ss_pred CCCCCHHHHHHHHHHHhc-----cChHHHHHHHHHcCCCH
Confidence 999999988877775421 12223444455555543
No 419
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.62 E-value=2.4e-07 Score=103.83 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=46.8
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhcCCC-CCCcceeeCCCCChhhHHHHHHHHHhCC-------cEEEEeC
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR-PPTGILMFGPPGCSKTLMARAVASEAGL-------NFLAVKG 713 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~-~~~giLL~GPpGtGKTtlAkaiA~~~~~-------~~i~v~~ 713 (957)
++.|++++++++.+.+.... .|.. ..+.++|.|||||||||+|++||+.++. +++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 89999999998887764321 1222 3456899999999999999999999876 8888877
No 420
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.61 E-value=1.6e-06 Score=92.50 Aligned_cols=118 Identities=24% Similarity=0.294 Sum_probs=84.1
Q ss_pred CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC------------CCCchhhhhCCCCcce
Q 002169 389 PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR------------PDSIEPALRRPGRLDR 456 (957)
Q Consensus 389 p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~------------~~~ld~al~r~gRfd~ 456 (957)
|.||||||++.|- -.-.+-|...+++ .--.++|++||+ |+-++-.+.. |+ -
T Consensus 289 pGVLFIDEvHMLD-----------IEcFsFlNrAlE~---d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~-l 351 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD-----------IECFSFLNRALEN---DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM-L 351 (454)
T ss_pred cceEEEeeehhhh-----------hHHHHHHHHHhhh---ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-h
Confidence 7889999988762 1222223333332 223467777776 4556666655 44 2
Q ss_pred eeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccccc
Q 002169 457 EIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKIQT 523 (957)
Q Consensus 457 ~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~ 523 (957)
.|.-.+++.++..+||+..+......+.+..++.|......-+-+.-..|+..|.+.|.+|......
T Consensus 352 II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~ 418 (454)
T KOG2680|consen 352 IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVE 418 (454)
T ss_pred eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceee
Confidence 3667788999999999999998888888999999988877777777788899999999988655433
No 421
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.60 E-value=2.4e-07 Score=105.10 Aligned_cols=192 Identities=22% Similarity=0.234 Sum_probs=120.5
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHH----cCCcEEEEecccccccc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHD----SGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~----l~~~~i~i~~~~l~~~~ 369 (957)
.+.++.|-+...+++++.+... .+.+.+||++|++||||+.+|++|... ...+|+.+||..+...-
T Consensus 76 ~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~ 145 (403)
T COG1221 76 ALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL 145 (403)
T ss_pred hhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCH
Confidence 3467888888888877776441 245788999999999999999999843 35689999998765432
Q ss_pred c-------------chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc---------c
Q 002169 370 Y-------------GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV---------C 427 (957)
Q Consensus 370 ~-------------ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l---------~ 427 (957)
. | ....-..+|+.|..+ +||+|||+.+-+ .....|+..|+.- .
T Consensus 146 ~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~-----------~~Q~kLl~~le~g~~~rvG~~~~ 210 (403)
T COG1221 146 QEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPP-----------EGQEKLLRVLEEGEYRRVGGSQP 210 (403)
T ss_pred HHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCH-----------hHHHHHHHHHHcCceEecCCCCC
Confidence 1 1 111223355555444 999999988843 3445688888762 1
Q ss_pred cCCCeEEEEecCCCCCchhhhhCC-C----CcceeeeecCCCHHHHHH-H---H----HHHHcCCCCCCC---hHHHHHH
Q 002169 428 RTDGVLVIAATNRPDSIEPALRRP-G----RLDREIEIAVPSPAQRLE-I---L----HALLSGMEHSLL---DSEVEYL 491 (957)
Q Consensus 428 ~~~~v~vI~ttN~~~~ld~al~r~-g----Rfd~~I~i~~P~~~~r~~-I---l----~~~l~~~~~~l~---~~~l~~L 491 (957)
...+|.+|++||. .++.+++.. . |+ .+.|..|...+|.+ | + +.+.++.+..+. +..+..|
T Consensus 211 ~~~dVRli~AT~~--~l~~~~~~g~dl~~rl~--~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 211 RPVDVRLICATTE--DLEEAVLAGADLTRRLN--ILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred cCCCceeeecccc--CHHHHHHhhcchhhhhc--CceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 2345888998873 344433320 0 22 24566677666632 2 2 233344444332 2345555
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHH
Q 002169 492 SMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 492 a~~t~g~~gaDi~~l~~~A~~~a 514 (957)
-...-.-+-++++++++.++..+
T Consensus 287 ~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 287 LAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHh
Confidence 44443345688999998887666
No 422
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.2e-07 Score=103.49 Aligned_cols=99 Identities=26% Similarity=0.446 Sum_probs=73.7
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc-cccccchHH-HHHHHHHHHHh----CCCeEEEEeCCchhhhh
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SKWVGESEK-AVRSLFAKARA----NAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~-~~~vg~~~~-~ir~~f~~A~~----~~p~ILfiDEid~l~~~ 754 (957)
.+|||.||+|+|||+||+.||+.++.||...++..|. ..|+|+... .+..++..|.. .+..|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 5699999999999999999999999999999998875 469998544 44555544321 22349999999999854
Q ss_pred cCCCCCC-CcchHHHHHHHHHHHhcc
Q 002169 755 RGKESDG-VSVSDRVMSQLLVELDGL 779 (957)
Q Consensus 755 r~~~~~~-~~~~~~v~~~LL~~ld~~ 779 (957)
....... .-..+-++..||..+++.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 4333222 223467888899999874
No 423
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=3.7e-07 Score=102.79 Aligned_cols=132 Identities=22% Similarity=0.346 Sum_probs=93.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCc-------------------------EEEEecccccc--------------
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVN-------------------------LFTVNGPEVVS-------------- 367 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~~-------------------------~i~i~~~~l~~-------------- 367 (957)
+.+..+||+||+|+||+++|+++|+.+.+. +..+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 457789999999999999999999877432 12221110000
Q ss_pred cccc---------hhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEE
Q 002169 368 QNYG---------ESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLV 434 (957)
Q Consensus 368 ~~~g---------e~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~v 434 (957)
...| -.-..++.+.+.+. .....|++||++|.+. ....+.||+.|++ ...++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE--Pp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-----------VAAANALLKTLEE--PPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-----------HHHHHHHHHHhcC--CCcCcEE
Confidence 0000 01234555555432 2335699999999884 3455779999997 5678999
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHH
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHA 474 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~ 474 (957)
|++|++++.+.|.+++ |+ ..+.|+.|+.++..+.|..
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence 9999999999999999 77 4699999999988888865
No 424
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.5e-06 Score=98.13 Aligned_cols=151 Identities=18% Similarity=0.235 Sum_probs=102.5
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCC------------------------cEEEEecccccccccchhHHHHHHHHH
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGV------------------------NLFTVNGPEVVSQNYGESEQALHEVFD 382 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~------------------------~~i~i~~~~l~~~~~ge~e~~i~~vf~ 382 (957)
+.+..+||+||+|+||+++|+++|..+-+ .+..+.... .... -.-..+|.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKSS--LGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-cccc--CCHHHHHHHHH
Confidence 34567999999999999999999987622 122222110 0000 11234444444
Q ss_pred H----HhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceee
Q 002169 383 S----ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREI 458 (957)
Q Consensus 383 ~----a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I 458 (957)
. ...+...|++||++|.+. ....+.||+.|++ ...++++|.+|+.++.+.|.+++ |.. .+
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT-----------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC-----------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 3 333456799999999884 3456789999998 56789999999999999999999 764 48
Q ss_pred eecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 459 EIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 459 ~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.|+.|+.++..+.+... . .+++.....++..+.|-.+.
T Consensus 163 ~~~~~~~~~~~~~L~~~---~--~~~~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 163 YLAPPPEQYALTWLSRE---V--TMSQDALLAALRLSAGAPGA 200 (334)
T ss_pred cCCCCCHHHHHHHHHHc---c--CCCHHHHHHHHHHcCCCHHH
Confidence 89999988877766532 1 23455556666666665443
No 425
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.58 E-value=1.6e-07 Score=112.20 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=97.2
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE----eccccccccc--
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV----NGPEVVSQNY-- 370 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i----~~~~l~~~~~-- 370 (957)
.|.|.+.+|..|.-.+.-.-....-....+...-+|||+|+||||||++|++++.......+.. ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 4677777655543332111000000011233345899999999999999999999876443221 2222211111
Q ss_pred ---chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-----------cCCCeEEEE
Q 002169 371 ---GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-----------RTDGVLVIA 436 (957)
Q Consensus 371 ---ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-----------~~~~v~vI~ 436 (957)
|+...... .+.. ....+++|||+|.+. ......|++.|+.-. -..++.||+
T Consensus 284 ~~~g~~~~~~G-~l~~---A~~Gil~iDEi~~l~-----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viA 348 (509)
T smart00350 284 PETREFTLEGG-ALVL---ADNGVCCIDEFDKMD-----------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLA 348 (509)
T ss_pred cCcceEEecCc-cEEe---cCCCEEEEechhhCC-----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEE
Confidence 11000000 1111 224599999999874 234456777775421 124688999
Q ss_pred ecCCCC-------------CchhhhhCCCCcceee-eecCCCHHHHHHHHHHHHc
Q 002169 437 ATNRPD-------------SIEPALRRPGRLDREI-EIAVPSPAQRLEILHALLS 477 (957)
Q Consensus 437 ttN~~~-------------~ld~al~r~gRfd~~I-~i~~P~~~~r~~Il~~~l~ 477 (957)
|+|+.+ .+++++.+ |||-.+ ..+.|+.+...+|.+..+.
T Consensus 349 a~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 349 AANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999863 58899999 998854 5578999999999987654
No 426
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.58 E-value=1.4e-06 Score=98.24 Aligned_cols=158 Identities=25% Similarity=0.335 Sum_probs=104.0
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeC--------C
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKG--------P 714 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~--------~ 714 (957)
.-|.-++|++..|..|.-... .+.-.|+|+-|+.||||||++|+||..+.---+...+ +
T Consensus 14 ~pf~aivGqd~lk~aL~l~av-------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV-------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc-------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 346778899999887643321 1234579999999999999999999887321111111 0
Q ss_pred ------------------------CcccccccchHH----------HH--------HHHHHHHHhCCCeEEEEeCCchhh
Q 002169 715 ------------------------ELFSKWVGESEK----------AV--------RSLFAKARANAPSIIFFDEIDGLA 752 (957)
Q Consensus 715 ------------------------~l~~~~vg~~~~----------~i--------r~~f~~A~~~~p~ILfiDEid~l~ 752 (957)
.++..=+|.++. .+ -.++.+|..+ |||+||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRG---IlYvDEvnlL- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRG---ILYVDEVNLL- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCC---EEEEeccccc-
Confidence 000000112222 11 1334555555 9999999855
Q ss_pred hhcCCCCCCCcchHHHHHHHHHHHhcc-----------ccCCcEEEEEecCCCC-CCChhhhCCCCcceecccCCC-CHH
Q 002169 753 AIRGKESDGVSVSDRVMSQLLVELDGL-----------HQRVNVTVIAATNRPD-KIDPALLRPGRFDRLLYVGPP-NET 819 (957)
Q Consensus 753 ~~r~~~~~~~~~~~~v~~~LL~~ld~~-----------~~~~~v~VI~aTN~~~-~id~aLlr~gRfd~~i~~~~P-~~~ 819 (957)
.+.+++.||..+..- ....++++|+++|.-+ .|-|.|+. ||...+.+..| +.+
T Consensus 157 ------------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 157 ------------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred ------------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 567888888887642 2344788999998654 58899998 99999888655 567
Q ss_pred HHHHHHHHHHhc
Q 002169 820 DREEIFRIHLRK 831 (957)
Q Consensus 820 er~~Il~~~l~~ 831 (957)
+|.+|.++.+.-
T Consensus 223 ~rv~Ii~r~~~f 234 (423)
T COG1239 223 ERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHHh
Confidence 899999877653
No 427
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.57 E-value=9.7e-08 Score=100.18 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=34.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEecccccc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVS 367 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~ 367 (957)
++.+..+..++|.||+||||||+.|++.+..... -+.+++.++.+
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~ 67 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD 67 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeeccc
Confidence 4678899999999999999999999999766332 25566555444
No 428
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.9e-06 Score=96.25 Aligned_cols=152 Identities=22% Similarity=0.313 Sum_probs=99.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCc---------------------EEEEe-cccccccc--cchhHHHHHHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVN---------------------LFTVN-GPEVVSQN--YGESEQALHEVFDSA 384 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~---------------------~i~i~-~~~l~~~~--~ge~e~~i~~vf~~a 384 (957)
+..+||+||+|+||+++|.++|..+-+. +..+. .++-.+.. ..-.-..||++.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 5579999999999999999999766321 22221 00000000 001133556665544
Q ss_pred h----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeee
Q 002169 385 S----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEI 460 (957)
Q Consensus 385 ~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i 460 (957)
. .+.-.|++||++|.+. ....+.|++.|++ ...++++|.+|+.++.+.|.+++ |+. .+.|
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~ 169 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAIN-----------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RCQ-RLEF 169 (319)
T ss_pred hhCcccCCcEEEEeccHhhhC-----------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hhe-EeeC
Confidence 3 2234699999999884 3456779999988 45678899999999999999999 763 4889
Q ss_pred cCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHH
Q 002169 461 AVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGAD 502 (957)
Q Consensus 461 ~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaD 502 (957)
+.|+.++..+.+... + +++.+...++..+.|-.+.-
T Consensus 170 ~~~~~~~~~~~L~~~----~--~~~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 170 KLPPAHEALAWLLAQ----G--VSERAAQEALDAARGHPGLA 205 (319)
T ss_pred CCcCHHHHHHHHHHc----C--CChHHHHHHHHHcCCCHHHH
Confidence 999998777766531 2 34444555666666655443
No 429
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.54 E-value=8e-07 Score=109.29 Aligned_cols=155 Identities=18% Similarity=0.221 Sum_probs=91.2
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHH--------HhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-------CcEEEE
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAF--------KRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-------LNFLAV 711 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~--------~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-------~~~i~v 711 (957)
.|.|.+.+|+.+.=.+-......... ....++...+|||+|+||||||.+|++++.... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 47899999987754442211100000 001234455799999999999999999998653 344444
Q ss_pred eCCCccc-c--cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------
Q 002169 712 KGPELFS-K--WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------- 780 (957)
Q Consensus 712 ~~~~l~~-~--~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-------- 780 (957)
.+..... . ..|+.. .-...+..|.++ +++|||++.+ .......|+..|+...
T Consensus 531 gLTa~~~~~d~~tG~~~-le~GaLvlAdgG---tL~IDEidkm-------------s~~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 531 GLTASIKFNESDNGRAM-IQPGAVVLANGG---VCCIDELDKC-------------HNESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred cccchhhhcccccCccc-ccCCcEEEcCCC---eEEecchhhC-------------CHHHHHHHHHHHhCCEEEEecCCc
Confidence 3332211 0 001000 001123344444 9999999976 3445556777775431
Q ss_pred ---cCCcEEEEEecCCCC-------------CCChhhhCCCCcceeccc-CCCCHHH
Q 002169 781 ---QRVNVTVIAATNRPD-------------KIDPALLRPGRFDRLLYV-GPPNETD 820 (957)
Q Consensus 781 ---~~~~v~VI~aTN~~~-------------~id~aLlr~gRfd~~i~~-~~P~~~e 820 (957)
-..++.||+|+|..+ .+.++|++ |||-++.+ +.|+.+.
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~ 648 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDT 648 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHH
Confidence 124789999999742 25799999 99976544 5566543
No 430
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.54 E-value=4.2e-08 Score=105.33 Aligned_cols=83 Identities=27% Similarity=0.333 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhh------
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALL------ 802 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLl------ 802 (957)
|..+++|....|.||++||+.+.++-+. +-+++..+..+....+.+||+++|++.. |++
T Consensus 146 rv~iArALaQ~~~iLLLDEPTs~LDi~~------------Q~evl~ll~~l~~~~~~tvv~vlHDlN~---A~ryad~~i 210 (258)
T COG1120 146 RVLIARALAQETPILLLDEPTSHLDIAH------------QIEVLELLRDLNREKGLTVVMVLHDLNL---AARYADHLI 210 (258)
T ss_pred HHHHHHHHhcCCCEEEeCCCccccCHHH------------HHHHHHHHHHHHHhcCCEEEEEecCHHH---HHHhCCEEE
Confidence 6778999999999999999998765432 2245566666665668899999997754 432
Q ss_pred --CCCCcceecccCCCCHHHHHHHHHHHH
Q 002169 803 --RPGRFDRLLYVGPPNETDREEIFRIHL 829 (957)
Q Consensus 803 --r~gRfd~~i~~~~P~~~er~~Il~~~l 829 (957)
+.|+ ++..+.|..-...+.++..+
T Consensus 211 ~lk~G~---i~a~G~p~evlT~e~l~~Vy 236 (258)
T COG1120 211 LLKDGK---IVAQGTPEEVLTEENLREVY 236 (258)
T ss_pred EEECCe---EEeecCcchhcCHHHHHHHh
Confidence 3233 45556665544444444433
No 431
>PRK08116 hypothetical protein; Validated
Probab=98.53 E-value=3.2e-07 Score=100.59 Aligned_cols=131 Identities=27% Similarity=0.362 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccc----hhHHHHHHHHHHHhccCCeEEEEcCcccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYG----ESEQALHEVFDSASQSAPAVVFIDELDAI 400 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~g----e~e~~i~~vf~~a~~~~p~IL~IDEiD~l 400 (957)
.+.+++|+|++|||||+||.++|+++ +..++.++.++++..... ........+++... ...+|+|||+...
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 35679999999999999999999876 678888888776654321 11112223444332 3459999998542
Q ss_pred ccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC-CCc----hhhhhCCCCc---ceeeeecCCCHHHHHHHH
Q 002169 401 APARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP-DSI----EPALRRPGRL---DREIEIAVPSPAQRLEIL 472 (957)
Q Consensus 401 ~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~-~~l----d~al~r~gRf---d~~I~i~~P~~~~r~~Il 472 (957)
. ........|.++++..... +..+|+|||.+ +++ +..+.+ |+ ...|.+.-++ -|..+.
T Consensus 191 ~---------~t~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d--~R~~~~ 256 (268)
T PRK08116 191 R---------DTEWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKS--YRKEIA 256 (268)
T ss_pred C---------CCHHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcC--hhHHHH
Confidence 1 1123345677777765333 34567777753 343 344444 43 2235555555 355544
Q ss_pred HH
Q 002169 473 HA 474 (957)
Q Consensus 473 ~~ 474 (957)
+.
T Consensus 257 ~e 258 (268)
T PRK08116 257 KE 258 (268)
T ss_pred HH
Confidence 43
No 432
>PRK08116 hypothetical protein; Validated
Probab=98.51 E-value=3.2e-07 Score=100.58 Aligned_cols=123 Identities=15% Similarity=0.265 Sum_probs=76.6
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccc----hHHHHHHHHHHHHhCCCeEEEEeCCchhh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE----SEKAVRSLFAKARANAPSIIFFDEIDGLA 752 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~----~~~~ir~~f~~A~~~~p~ILfiDEid~l~ 752 (957)
..+++|+|++|||||.||.+||+++ +.+++.++.++++..+... .......+++... ...+|+|||++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e- 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE- 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC-
Confidence 4579999999999999999999985 6788888887766543211 1112223444333 2349999999632
Q ss_pred hhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC-C----CChhhhCCCCc---ceecccCCCCH
Q 002169 753 AIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD-K----IDPALLRPGRF---DRLLYVGPPNE 818 (957)
Q Consensus 753 ~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~-~----id~aLlr~gRf---d~~i~~~~P~~ 818 (957)
...+.....|...++..... +..+|+|||.+. . ++..+.+ |+ ...|.+.-++.
T Consensus 191 ----------~~t~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 ----------RDTEWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ----------CCCHHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 12344456676777754333 445788888652 2 3556665 53 23455555554
No 433
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.49 E-value=7.5e-07 Score=105.82 Aligned_cols=78 Identities=21% Similarity=0.178 Sum_probs=53.4
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc--------------cc--------------cch
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK--------------WV--------------GES 724 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~--------------~v--------------g~~ 724 (957)
|+.+...+|+.||||+|||+++-.++.+. +-+.+.+...+-... +. ...
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56677779999999999999999887654 445555554332111 00 011
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 725 EKAVRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 725 ~~~ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
+..+..+.+.+....|.+++||=+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 44556677777788899999999987743
No 434
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.48 E-value=6.4e-07 Score=108.48 Aligned_cols=134 Identities=22% Similarity=0.281 Sum_probs=87.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEecccccccccchhH--HHHH-H--HHHH--HhccCCeEEEEcCcccc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVSQNYGESE--QALH-E--VFDS--ASQSAPAVVFIDELDAI 400 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~~~~l~~~~~ge~e--~~i~-~--vf~~--a~~~~p~IL~IDEiD~l 400 (957)
.+|||.|+||||||++|++++..++. +|+.+..........|... ..+. . .|+. .......+|||||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 58999999999999999999998764 4777764222222223211 0000 0 0110 00112359999999887
Q ss_pred ccCCcCCCchHHHHHHHHHHHHhhccc-----------cCCCeEEEEecCCCC---CchhhhhCCCCcceeeeec-CCCH
Q 002169 401 APARKDGGEELSQRMVATLLNLMDGVC-----------RTDGVLVIAATNRPD---SIEPALRRPGRLDREIEIA-VPSP 465 (957)
Q Consensus 401 ~~~~~~~~~~~~~~i~~~Ll~~ld~l~-----------~~~~v~vI~ttN~~~---~ld~al~r~gRfd~~I~i~-~P~~ 465 (957)
. ..+...|++.|+.-. ...++.+|+++|..+ .+.+++.. ||...+.+. .|+.
T Consensus 97 ~-----------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~ 163 (589)
T TIGR02031 97 D-----------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQ 163 (589)
T ss_pred C-----------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCH
Confidence 3 456677888886421 123588999999875 68889988 998876665 4677
Q ss_pred HHHHHHHHHHH
Q 002169 466 AQRLEILHALL 476 (957)
Q Consensus 466 ~~r~~Il~~~l 476 (957)
++|.+|++...
T Consensus 164 ~er~eil~~~~ 174 (589)
T TIGR02031 164 DLRVEIVRRER 174 (589)
T ss_pred HHHHHHHHHHH
Confidence 77888887654
No 435
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.47 E-value=9.4e-07 Score=93.71 Aligned_cols=181 Identities=24% Similarity=0.326 Sum_probs=99.8
Q ss_pred CCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc---EEEEecccccc--------
Q 002169 299 GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---LFTVNGPEVVS-------- 367 (957)
Q Consensus 299 ~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~---~i~i~~~~l~~-------- 367 (957)
.|-+.+.+.|.+++.. .+...++|+||.|+|||+|++.+...+... .+.+.......
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 3666777777666422 236789999999999999999999887321 11111100000
Q ss_pred --------------c-------------ccchhHHHHHHHHHHHhcc-CCeEEEEcCccccc-cCCcCCCchHHHHHHHH
Q 002169 368 --------------Q-------------NYGESEQALHEVFDSASQS-APAVVFIDELDAIA-PARKDGGEELSQRMVAT 418 (957)
Q Consensus 368 --------------~-------------~~ge~e~~i~~vf~~a~~~-~p~IL~IDEiD~l~-~~~~~~~~~~~~~i~~~ 418 (957)
. ........+..+++..... ...||+|||++.+. ... ........
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~~~~~~ 143 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDKDFLKS 143 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chHHHHHH
Confidence 0 0011233455555554433 24899999999997 211 12456667
Q ss_pred HHHHhhccccCCCeEEEEecCCCCCchh----hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCC--ChHHHHHHH
Q 002169 419 LLNLMDGVCRTDGVLVIAATNRPDSIEP----ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSL--LDSEVEYLS 492 (957)
Q Consensus 419 Ll~~ld~l~~~~~v~vI~ttN~~~~ld~----al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l--~~~~l~~La 492 (957)
|...++......++.+|+++........ .-.-.+|+.. +.++..+.++..+++....... ..+ ++.+++.+.
T Consensus 144 l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~ 221 (234)
T PF01637_consen 144 LRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIY 221 (234)
T ss_dssp HHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHH
T ss_pred HHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHH
Confidence 7777777655666666666554222211 0001237766 9999999999999999988776 544 888899998
Q ss_pred HHcCCCc
Q 002169 493 MATHGFV 499 (957)
Q Consensus 493 ~~t~g~~ 499 (957)
..+.|.-
T Consensus 222 ~~~gG~P 228 (234)
T PF01637_consen 222 SLTGGNP 228 (234)
T ss_dssp HHHTT-H
T ss_pred HHhCCCH
Confidence 8888764
No 436
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.47 E-value=2.6e-07 Score=97.64 Aligned_cols=131 Identities=24% Similarity=0.415 Sum_probs=78.8
Q ss_pred HHHhcCCCCCCc--ceeeCCCCChhhHHHHHHHHHhCC--cEEEEeCCCc----------------c-------------
Q 002169 671 AFKRIGTRPPTG--ILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPEL----------------F------------- 717 (957)
Q Consensus 671 ~~~~l~~~~~~g--iLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~~~l----------------~------------- 717 (957)
+++++++....| +.|.||+|||||||.++||+.... .-+.+++..+ +
T Consensus 18 vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l 97 (248)
T COG1116 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGL 97 (248)
T ss_pred EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehh
Confidence 344445555555 999999999999999999976421 2233333221 0
Q ss_pred ---------------------------cccccc--hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchH-H
Q 002169 718 ---------------------------SKWVGE--SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD-R 767 (957)
Q Consensus 718 ---------------------------~~~vg~--~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~-~ 767 (957)
.+|..+ ...+.|..+++|....|.||++||+-.-++. .++ .
T Consensus 98 ~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDa---------lTR~~ 168 (248)
T COG1116 98 ELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDA---------LTREE 168 (248)
T ss_pred hccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhH---------HHHHH
Confidence 001111 1122378899999999999999998754432 122 2
Q ss_pred HHHHHHHHHhccccCCcEEEEEecCCCCCCChhhh----------CCCCcceecccCCCC
Q 002169 768 VMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALL----------RPGRFDRLLYVGPPN 817 (957)
Q Consensus 768 v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLl----------r~gRfd~~i~~~~P~ 817 (957)
+.+.++.. ....+.+|++.||+.++ |+. +|+|....+.++.|.
T Consensus 169 lq~~l~~l----w~~~~~TvllVTHdi~E---Av~LsdRivvl~~~P~~i~~~~~i~l~r 221 (248)
T COG1116 169 LQDELLRL----WEETRKTVLLVTHDVDE---AVYLADRVVVLSNRPGRIGEELEIDLPR 221 (248)
T ss_pred HHHHHHHH----HHhhCCEEEEEeCCHHH---HHhhhCEEEEecCCCcceeeEEecCCCC
Confidence 22333333 33456889999996654 443 556665566666553
No 437
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.46 E-value=1.4e-06 Score=105.70 Aligned_cols=49 Identities=31% Similarity=0.368 Sum_probs=40.8
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN 356 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~ 356 (957)
-++++.|.++.++.++..+. .+++++|+||||||||++++++++.++..
T Consensus 16 ~~~~viG~~~a~~~l~~a~~--------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAK--------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hHhhccCHHHHHHHHHHHHH--------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 45688999999988887753 23489999999999999999999998654
No 438
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.46 E-value=3.8e-07 Score=98.62 Aligned_cols=170 Identities=21% Similarity=0.203 Sum_probs=113.7
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc------EEEEeccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN------LFTVNGPEVV 366 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~------~i~i~~~~l~ 366 (957)
..++++.+.++....+.++.. ...-.+.|+|||||||||+...+.|..+-.+ +.+.+.++-.
T Consensus 38 ~~l~dv~~~~ei~st~~~~~~------------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r 105 (360)
T KOG0990|consen 38 PFLGIVIKQEPIWSTENRYSG------------MPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR 105 (360)
T ss_pred chhhhHhcCCchhhHHHHhcc------------CCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc
Confidence 445678888888888777732 2222389999999999999999999887442 1223333321
Q ss_pred ccccchhHHHHHHHHHHHhc-------cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 367 SQNYGESEQALHEVFDSASQ-------SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~-------~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
+- + ..+.-...|..+.. ..+..+++||+|++.. ...++|...++.+. .++.|+..+|
T Consensus 106 gi--d-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~-----------~AQnALRRviek~t--~n~rF~ii~n 169 (360)
T KOG0990|consen 106 GI--D-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR-----------DAQNALRRVIEKYT--ANTRFATISN 169 (360)
T ss_pred CC--c-chHHHHHHHHhhccceeccccCceeEEEecchhHhhH-----------HHHHHHHHHHHHhc--cceEEEEecc
Confidence 11 1 11222334554442 2578999999998853 44455666666653 4567778899
Q ss_pred CCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHH
Q 002169 440 RPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSM 493 (957)
Q Consensus 440 ~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~ 493 (957)
++..+.|++++ ||.+ +.+..-+..+....+..+...-.....++....++.
T Consensus 170 ~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r 220 (360)
T KOG0990|consen 170 PPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGR 220 (360)
T ss_pred ChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHH
Confidence 99999999998 8865 677777777777888877776666656655555444
No 439
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.46 E-value=3e-06 Score=99.87 Aligned_cols=179 Identities=27% Similarity=0.369 Sum_probs=115.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEeccccccc---c-------cchh------HHHHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGPEVVSQ---N-------YGES------EQALHEVFD 382 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~~~l~~~---~-------~ge~------e~~i~~vf~ 382 (957)
+..+.+.|-||||||..++.+...+ ...+++||+..+.+. | .|+. -..+..-|.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc
Confidence 3467788999999999999998755 346899999876553 1 1111 112222333
Q ss_pred HHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc-ccCCCeEEEEecCCCCCchhhhhC--CCCcc-ee
Q 002169 383 SAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-CRTDGVLVIAATNRPDSIEPALRR--PGRLD-RE 457 (957)
Q Consensus 383 ~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l-~~~~~v~vI~ttN~~~~ld~al~r--~gRfd-~~ 457 (957)
... ...++|++|||+|.|+...++ -|.+++|-. ....+.+||+..|..+....-+.. ..|++ .+
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~Qd-----------VlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRSQD-----------VLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhcccHH-----------HHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 111 234789999999999865422 355666554 245678888888886543332221 11433 35
Q ss_pred eeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH--HHHHHHHHHHHHHHHHhc
Q 002169 458 IEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA--DLAALCNEAALVCLRRYS 519 (957)
Q Consensus 458 I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga--Di~~l~~~A~~~a~rr~~ 519 (957)
|.|.+++.+|..+|+...+.... .+....++-.|+.....+|. -...+|+.|+..|-.+..
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~ 633 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNV 633 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcc
Confidence 89999999999999999988873 33556667677665555543 334578888777765543
No 440
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=3e-06 Score=94.65 Aligned_cols=128 Identities=18% Similarity=0.271 Sum_probs=90.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCC-----------------------cEEEEecccccccccchhHHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGV-----------------------NLFTVNGPEVVSQNYGESEQALHEVFDSA 384 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~-----------------------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a 384 (957)
.+..+||+||.|+||+++|+++|..+-+ .++.+.... .++.+ .-..+|.+.+.+
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~~ 100 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRLA 100 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHHH
Confidence 3567999999999999999999986622 123332210 01111 123445554433
Q ss_pred h----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeee
Q 002169 385 S----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEI 460 (957)
Q Consensus 385 ~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i 460 (957)
. .+...|++||++|.+. ....+.|++.+++ ...++++|.+|+.++.+.|.+++ |.- .+.|
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~ 164 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMN-----------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ-QWVV 164 (319)
T ss_pred hhCcccCCceEEEecchhhhC-----------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-eEeC
Confidence 2 3335799999999884 3456779999998 56779999999999999999999 763 4889
Q ss_pred cCCCHHHHHHHHHH
Q 002169 461 AVPSPAQRLEILHA 474 (957)
Q Consensus 461 ~~P~~~~r~~Il~~ 474 (957)
+.|+.++..+.+..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (319)
T PRK06090 165 TPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999887777754
No 441
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.44 E-value=1.1e-07 Score=93.69 Aligned_cols=106 Identities=27% Similarity=0.455 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC---cEEEEeCCCcccccccchHH
Q 002169 650 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL---NFLAVKGPELFSKWVGESEK 726 (957)
Q Consensus 650 G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~---~~i~v~~~~l~~~~vg~~~~ 726 (957)
|.....+.+++.+... ......++|+|++||||+++|++|....+. +|+.+++..+-
T Consensus 2 G~S~~~~~l~~~l~~~-----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERL-----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHH-----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCHHHHHHHHHHHHH-----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 4455555555554321 134567999999999999999999987654 55555544321
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 727 AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 727 ~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
.++++.+..+ +|||+|+|.+ ....+..|+..++... ..++.+|++|..+
T Consensus 62 --~~~l~~a~~g---tL~l~~i~~L-------------~~~~Q~~L~~~l~~~~-~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --AELLEQAKGG---TLYLKNIDRL-------------SPEAQRRLLDLLKRQE-RSNVRLIASSSQD 110 (138)
T ss_dssp --HHHHHHCTTS---EEEEECGCCS--------------HHHHHHHHHHHHHCT-TTTSEEEEEECC-
T ss_pred --HHHHHHcCCC---EEEECChHHC-------------CHHHHHHHHHHHHhcC-CCCeEEEEEeCCC
Confidence 4466666444 9999999976 3455566777777543 4467788777644
No 442
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.43 E-value=7.4e-06 Score=89.57 Aligned_cols=202 Identities=15% Similarity=0.193 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---------CcEEEEeccccccc----
Q 002169 302 SKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---------VNLFTVNGPEVVSQ---- 368 (957)
Q Consensus 302 ~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~---------~~~i~i~~~~l~~~---- 368 (957)
....+.|.+++..|.. .-..++||+|++|.|||++++.++..-. .+++.+..+.--+.
T Consensus 43 ~~~L~~L~~Ll~~P~~---------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 43 KEALDRLEELLEYPKR---------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred HHHHHHHHHHHhCCcc---------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 4455556666555522 2245799999999999999999986542 35666665321110
Q ss_pred ----------c-c-chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEE
Q 002169 369 ----------N-Y-GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIA 436 (957)
Q Consensus 369 ----------~-~-ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ 436 (957)
+ . ......-..+....+..++.+|+|||++.++.... +-..++++.+..+.+.-++.+|+
T Consensus 114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~--------~~qr~~Ln~LK~L~NeL~ipiV~ 185 (302)
T PF05621_consen 114 SAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY--------RKQREFLNALKFLGNELQIPIVG 185 (302)
T ss_pred HHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH--------HHHHHHHHHHHHHhhccCCCeEE
Confidence 0 0 11112222333444556677999999999764321 11334555566555566666666
Q ss_pred ecCCC----CCchhhhhCCCCcceeeeecCCCH-HHHHHHHHHHHcCCCCC----CCh-HHHHHHHHHcCCCcHHHHHHH
Q 002169 437 ATNRP----DSIEPALRRPGRLDREIEIAVPSP-AQRLEILHALLSGMEHS----LLD-SEVEYLSMATHGFVGADLAAL 506 (957)
Q Consensus 437 ttN~~----~~ld~al~r~gRfd~~I~i~~P~~-~~r~~Il~~~l~~~~~~----l~~-~~l~~La~~t~g~~gaDi~~l 506 (957)
+.... =.-|+.+.+ ||+. +.++.... ++...++..+-..+++. +.+ .....+-..+.|.. .++..+
T Consensus 186 vGt~~A~~al~~D~QLa~--RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~l 261 (302)
T PF05621_consen 186 VGTREAYRALRTDPQLAS--RFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRL 261 (302)
T ss_pred eccHHHHHHhccCHHHHh--ccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHH
Confidence 65321 133466666 8865 44444322 23344555544443322 233 33466677777766 568889
Q ss_pred HHHHHHHHHHHhcccccc
Q 002169 507 CNEAALVCLRRYSKIQTS 524 (957)
Q Consensus 507 ~~~A~~~a~rr~~~~~~~ 524 (957)
+..|+..|++...+.++.
T Consensus 262 l~~aA~~AI~sG~E~It~ 279 (302)
T PF05621_consen 262 LNAAAIAAIRSGEERITR 279 (302)
T ss_pred HHHHHHHHHhcCCceecH
Confidence 999999999877665543
No 443
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.42 E-value=1.3e-06 Score=103.05 Aligned_cols=188 Identities=22% Similarity=0.257 Sum_probs=115.3
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccch
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge 372 (957)
..+.|.....+.+.+.+... .....+++|+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 139 ~~lig~s~~~~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~-- 206 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKI----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL-- 206 (445)
T ss_pred cceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH--
Confidence 34566666666655544221 1345679999999999999999998765 45899999987633211
Q ss_pred hHHHHHHHHHH---------------HhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--c-------
Q 002169 373 SEQALHEVFDS---------------ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R------- 428 (957)
Q Consensus 373 ~e~~i~~vf~~---------------a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--~------- 428 (957)
-..+|.. .......+|||||++.+. ......|+..++.-. .
T Consensus 207 ----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 207 ----ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP-----------LNLQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred ----HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC-----------HHHHHHHHHHHhhCeEEeCCCCcee
Confidence 1111210 011234699999999884 344566777765421 1
Q ss_pred CCCeEEEEecCCCC-------CchhhhhCCCCcceeeeecCCCHHHHHH----HHHHHHc----CC---CCCCChHHHHH
Q 002169 429 TDGVLVIAATNRPD-------SIEPALRRPGRLDREIEIAVPSPAQRLE----ILHALLS----GM---EHSLLDSEVEY 490 (957)
Q Consensus 429 ~~~v~vI~ttN~~~-------~ld~al~r~gRfd~~I~i~~P~~~~r~~----Il~~~l~----~~---~~~l~~~~l~~ 490 (957)
..++.+|++|+..- .+.+.|.. |+. .+.+..|...+|.+ +++.++. .+ ...+++..+..
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 348 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRA 348 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 12578888887531 12222222 332 25677888777764 2333322 22 23568888888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHH
Q 002169 491 LSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 491 La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
|..+.-.-+.++|+++++.|+..
T Consensus 349 L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 349 LEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred HHhCCCCChHHHHHHHHHHHHHh
Confidence 88877666778999998887654
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.41 E-value=5.4e-07 Score=92.91 Aligned_cols=113 Identities=20% Similarity=0.371 Sum_probs=78.6
Q ss_pred HHHhcCCCCCCc--ceeeCCCCChhhHHHHHHHHHh--CCcEEEEeCCCccc----------------------c-----
Q 002169 671 AFKRIGTRPPTG--ILMFGPPGCSKTLMARAVASEA--GLNFLAVKGPELFS----------------------K----- 719 (957)
Q Consensus 671 ~~~~l~~~~~~g--iLL~GPpGtGKTtlAkaiA~~~--~~~~i~v~~~~l~~----------------------~----- 719 (957)
+++.+++...+| +.++||+|+||||+.|+|...- ...-|.+++..+.. .
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvle 96 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLE 96 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHH
Confidence 344444444454 8999999999999999998642 34445555522210 0
Q ss_pred ------------------------------------cccc--hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC
Q 002169 720 ------------------------------------WVGE--SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG 761 (957)
Q Consensus 720 ------------------------------------~vg~--~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~ 761 (957)
|..+ ..++.|..+++|.++.|.|++|||+++-
T Consensus 97 Nv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSA---------- 166 (240)
T COG1126 97 NVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSA---------- 166 (240)
T ss_pred HHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCccc----------
Confidence 1100 1223488899999999999999999964
Q ss_pred CcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 762 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 762 ~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
...+++.+.|..|..+... +.+.|+.||.+..
T Consensus 167 --LDPElv~EVL~vm~~LA~e-GmTMivVTHEM~F 198 (240)
T COG1126 167 --LDPELVGEVLDVMKDLAEE-GMTMIIVTHEMGF 198 (240)
T ss_pred --CCHHHHHHHHHHHHHHHHc-CCeEEEEechhHH
Confidence 3567788888888877655 6889999997754
No 445
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.40 E-value=8.1e-06 Score=96.33 Aligned_cols=220 Identities=21% Similarity=0.246 Sum_probs=138.0
Q ss_pred cCChHHHHHHHHHHHhchhhcHHHHHhcCCCC-CC--cceeeCCCCChhhHHHHHHHHHh----------CCcEEEEeCC
Q 002169 648 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRP-PT--GILMFGPPGCSKTLMARAVASEA----------GLNFLAVKGP 714 (957)
Q Consensus 648 i~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~-~~--giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v~~~ 714 (957)
+-+.+....+|..+++.. +.. .. .+.+.|-||||||.++..+..++ ...|+.||+-
T Consensus 398 LpcRe~E~~~I~~f~~~~-----------i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm 466 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSF-----------ISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGL 466 (767)
T ss_pred ccchhHHHHHHHHHHHhh-----------cCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcce
Confidence 445566666666555432 222 22 36788999999999999998754 3578999987
Q ss_pred Ccccc----------cccchH------HHHHHHHHHH-HhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHh
Q 002169 715 ELFSK----------WVGESE------KAVRSLFAKA-RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELD 777 (957)
Q Consensus 715 ~l~~~----------~vg~~~------~~ir~~f~~A-~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld 777 (957)
.+.+. +.|+.. ..+..-|... -...++||+|||+|.|....+ .+ |.+.++
T Consensus 467 ~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q----------dV---lYn~fd 533 (767)
T KOG1514|consen 467 RLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ----------DV---LYNIFD 533 (767)
T ss_pred eecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH----------HH---HHHHhc
Confidence 76543 122211 1112222211 124578999999999874331 12 222222
Q ss_pred cc-ccCCcEEEEEecCCCCCCChhhhC-C-CCcc-eecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCC--c
Q 002169 778 GL-HQRVNVTVIAATNRPDKIDPALLR-P-GRFD-RLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGC--T 851 (957)
Q Consensus 778 ~~-~~~~~v~VI~aTN~~~~id~aLlr-~-gRfd-~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~--s 851 (957)
=. .+...++||++.|.++....-|.. . .|++ ..|.|.+++..+..+|+...+.....-.....+-+|+.-... +
T Consensus 534 Wpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGD 613 (767)
T KOG1514|consen 534 WPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGD 613 (767)
T ss_pred CCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhcccc
Confidence 11 245578999999988764333321 0 1332 467899999999999999998876333333333344433323 3
Q ss_pred HHHHHHHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHhhCCC
Q 002169 852 GADISLICREAAISAIEENL-----DASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 852 g~dl~~l~~eA~~~a~~~~~-----~~~~It~~d~~~al~~~~p~ 891 (957)
.+....+|++|.-.|-.+.. ....|++.|+.+|+..+..+
T Consensus 614 aRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 614 ARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhh
Confidence 57778889999988877654 12468999999999998765
No 446
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=2e-06 Score=96.81 Aligned_cols=132 Identities=20% Similarity=0.355 Sum_probs=90.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCC-------------------------cEEEEecccc---cccc-cchhHHHH
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGV-------------------------NLFTVNGPEV---VSQN-YGESEQAL 377 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~-------------------------~~i~i~~~~l---~~~~-~ge~e~~i 377 (957)
+.+..+||+||+|+|||++|+.+|+.+.+ .++.+....- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44667999999999999999999987632 2333432110 0000 00123456
Q ss_pred HHHHHHHhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCC
Q 002169 378 HEVFDSASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGR 453 (957)
Q Consensus 378 ~~vf~~a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gR 453 (957)
|.+.+.+.. ....|++||+++.+. ....+.|++.++... .++++|++|+.++.+.+.+++ |
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--H
Confidence 666665542 335699999998873 345567888888763 457788899999999999998 6
Q ss_pred cceeeeecCCCHHHHHHHHHH
Q 002169 454 LDREIEIAVPSPAQRLEILHA 474 (957)
Q Consensus 454 fd~~I~i~~P~~~~r~~Il~~ 474 (957)
. ..+.|+.|+.++..+.+..
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 5 3488999999887777653
No 447
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.38 E-value=8e-06 Score=96.97 Aligned_cols=203 Identities=17% Similarity=0.249 Sum_probs=113.7
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc---
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF--- 717 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~--- 717 (957)
.+.+.+|+.-.++-.++++.+++.. + .+..+.+-+||+|||||||||++++||++++..+.+...+...
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~------~--~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEM------F--SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHH------h--ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 4445566666666666777666521 1 1223344578899999999999999999999988876433221
Q ss_pred ----cccccc---hH------HHHHHH-HHHHHh-----------CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHH
Q 002169 718 ----SKWVGE---SE------KAVRSL-FAKARA-----------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 772 (957)
Q Consensus 718 ----~~~vg~---~~------~~ir~~-f~~A~~-----------~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~L 772 (957)
..|.+. .. .....+ +..++. ..+.||+|||+=.+... ...+.-+.|
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~---------~~~~f~~~L 156 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR---------DTSRFREAL 156 (519)
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch---------hHHHHHHHH
Confidence 011111 00 111122 111121 24679999998754321 113444444
Q ss_pred HHHHhccccCC-cEEEEEe-c------CCC-C-------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC----
Q 002169 773 LVELDGLHQRV-NVTVIAA-T------NRP-D-------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI---- 832 (957)
Q Consensus 773 L~~ld~~~~~~-~v~VI~a-T------N~~-~-------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~---- 832 (957)
...+..- .. .+++|++ + |.. . .+.+.++.-.++ ..|.|.+-...-..+.|+..+...
T Consensus 157 ~~~l~~~--~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 157 RQYLRSS--RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred HHHHHcC--CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 4444422 22 6666666 1 111 1 345666654444 477887777766655555554432
Q ss_pred -C--CCCc-cc-HHHHHHHccCCcHHHHHHHHHHHHHHHH
Q 002169 833 -P--CSSD-VN-IRELACLSEGCTGADISLICREAAISAI 867 (957)
Q Consensus 833 -~--~~~~-~~-l~~la~~t~g~sg~dl~~l~~eA~~~a~ 867 (957)
+ ...+ .. ++.++..+.| ||+.+++..-+.+.
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 1 1111 22 6677777766 99999987777766
No 448
>PRK08181 transposase; Validated
Probab=98.38 E-value=4.4e-07 Score=99.09 Aligned_cols=101 Identities=21% Similarity=0.340 Sum_probs=65.2
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccc-hhHHHHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYG-ESEQALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~g-e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
.+.+++|+||||||||+||.+++.++ |..++.++..+++..... ........+++.. ..+.+|+|||++.+...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC
Confidence 46789999999999999999999754 677888888777664321 1111223344433 24579999999876422
Q ss_pred CcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 404 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
......|+++++..... ..+|+|||.+
T Consensus 183 ---------~~~~~~Lf~lin~R~~~--~s~IiTSN~~ 209 (269)
T PRK08181 183 ---------QAETSVLFELISARYER--RSILITANQP 209 (269)
T ss_pred ---------HHHHHHHHHHHHHHHhC--CCEEEEcCCC
Confidence 12234566666654332 3577788764
No 449
>PRK12377 putative replication protein; Provisional
Probab=98.36 E-value=1.3e-06 Score=94.46 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=61.9
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchH--HHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESE--KAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~--~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
..+++|+||||||||.||.|||+++ +..++.+..++++........ .....+++.. ....+|+|||++....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~- 177 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE- 177 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC-
Confidence 3679999999999999999999887 566777777776554221100 0112233333 3456999999975421
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
.+.....|...++..... ..-+|++||..
T Consensus 178 ----------s~~~~~~l~~ii~~R~~~-~~ptiitSNl~ 206 (248)
T PRK12377 178 ----------TKNEQVVLNQIIDRRTAS-MRSVGMLTNLN 206 (248)
T ss_pred ----------CHHHHHHHHHHHHHHHhc-CCCEEEEcCCC
Confidence 122233455555543222 34467889955
No 450
>PRK09183 transposase/IS protein; Provisional
Probab=98.35 E-value=8.5e-07 Score=96.78 Aligned_cols=104 Identities=18% Similarity=0.337 Sum_probs=66.5
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccc-hhHHHHHHHHHHHhccCCeEEEEcCccccc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYG-ESEQALHEVFDSASQSAPAVVFIDELDAIA 401 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~g-e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~ 401 (957)
+..+.+++|+||||||||+|+.+++... |..+..+++.++...... .....+..+++.. ...+++++|||++.+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 5567899999999999999999997653 667777777776543211 1112244555543 2456799999997653
Q ss_pred cCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 402 PARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 402 ~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
..+ .....|+.+++.....+ .+|+|||.+
T Consensus 178 ~~~---------~~~~~lf~li~~r~~~~--s~iiTsn~~ 206 (259)
T PRK09183 178 FSQ---------EEANLFFQVIAKRYEKG--SMILTSNLP 206 (259)
T ss_pred CCh---------HHHHHHHHHHHHHHhcC--cEEEecCCC
Confidence 221 22234666665543332 367788764
No 451
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.35 E-value=8.1e-07 Score=91.62 Aligned_cols=107 Identities=25% Similarity=0.417 Sum_probs=69.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC--CcEEEEeccccccc-cc-----------------------------
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQ-NY----------------------------- 370 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~--~~~i~i~~~~l~~~-~~----------------------------- 370 (957)
++.+..++-+.++||+|+|||||.|++...-. .--+.+++..+... ..
T Consensus 22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~la 101 (240)
T COG1126 22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA 101 (240)
T ss_pred ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhh
Confidence 36678899999999999999999999985431 22345555322111 00
Q ss_pred ---------chhHHHH--------------------------HHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHH
Q 002169 371 ---------GESEQAL--------------------------HEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRM 415 (957)
Q Consensus 371 ---------ge~e~~i--------------------------~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i 415 (957)
.+.+... |-.+.+|..+.|.|+++||.-+ ..+..+
T Consensus 102 p~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTS----------ALDPEl 171 (240)
T COG1126 102 PVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTS----------ALDPEL 171 (240)
T ss_pred hHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcc----------cCCHHH
Confidence 0111111 2222357788899999999533 346678
Q ss_pred HHHHHHHhhccccCCCeEEEEecCC
Q 002169 416 VATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 416 ~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
+.+.+..|..+... +.+.|+.|+.
T Consensus 172 v~EVL~vm~~LA~e-GmTMivVTHE 195 (240)
T COG1126 172 VGEVLDVMKDLAEE-GMTMIIVTHE 195 (240)
T ss_pred HHHHHHHHHHHHHc-CCeEEEEech
Confidence 88899999888655 4666667743
No 452
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.34 E-value=1.5e-05 Score=94.70 Aligned_cols=201 Identities=15% Similarity=0.249 Sum_probs=112.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc-cc----
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV-VS---- 367 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l-~~---- 367 (957)
.+.++|.-..+-+++++.++.... .+..+.+-+||+|||||||||++++||+++|..+.+...+.. ..
T Consensus 16 ~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~ 88 (519)
T PF03215_consen 16 KTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQ 88 (519)
T ss_pred CCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccc
Confidence 345567666777777777765331 233345677889999999999999999999998877543222 10
Q ss_pred --cccch---hH---HHHHHHHH-----HHhc-----------cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHh
Q 002169 368 --QNYGE---SE---QALHEVFD-----SASQ-----------SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 423 (957)
Q Consensus 368 --~~~ge---~e---~~i~~vf~-----~a~~-----------~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~l 423 (957)
.+.+. .+ ... ..|+ .+.. ..+.||+|||+-.+.... ..++...|..++
T Consensus 89 ~~d~~s~~~~~~~f~sq~-~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~-------~~~f~~~L~~~l 160 (519)
T PF03215_consen 89 EDDFESDFNKFDEFLSQS-DKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD-------TSRFREALRQYL 160 (519)
T ss_pred cccccccccccccccchh-hhhccccccccccccccccCCCcCCCceEEEeeccccccchh-------HHHHHHHHHHHH
Confidence 01111 00 111 1122 1111 246799999986443211 144444455555
Q ss_pred hccccCC-CeEEEEec-C------CCC--------CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCC-----C-C
Q 002169 424 DGVCRTD-GVLVIAAT-N------RPD--------SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGM-----E-H 481 (957)
Q Consensus 424 d~l~~~~-~v~vI~tt-N------~~~--------~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~-----~-~ 481 (957)
.. ... .+++|++- . ... .+++.+....++. .|.|.+-...-....|+..+... + .
T Consensus 161 ~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~ 237 (519)
T PF03215_consen 161 RS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKALKRILKKEARSSSGKN 237 (519)
T ss_pred Hc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHHHHHHHHHHhhhhcCCc
Confidence 43 222 55666661 1 111 2445555543443 48888877776666666655432 1 1
Q ss_pred CCC--hHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 002169 482 SLL--DSEVEYLSMATHGFVGADLAALCNEAALVCL 515 (957)
Q Consensus 482 ~l~--~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~ 515 (957)
..+ ...++.++..+. +||+..+..--+.+.
T Consensus 238 ~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 238 KVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred cCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 112 234788887655 488877765555554
No 453
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.34 E-value=7.2e-06 Score=92.51 Aligned_cols=173 Identities=21% Similarity=0.293 Sum_probs=107.4
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecc----------
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP---------- 363 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~---------- 363 (957)
.|.-+.|.+..+..|---. -.+.-.++|+-|+.||||||++|+||..+.-.-+.+.|.
T Consensus 15 pf~aivGqd~lk~aL~l~a------------v~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~ 82 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNA------------VDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEE 82 (423)
T ss_pred chhhhcCchHHHHHHhhhh------------cccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhh
Confidence 3456789887666542211 112245899999999999999999999885433222320
Q ss_pred ----------------------cccccccchhHH-HHHHH-HHHHh-------------ccCCeEEEEcCccccccCCcC
Q 002169 364 ----------------------EVVSQNYGESEQ-ALHEV-FDSAS-------------QSAPAVVFIDELDAIAPARKD 406 (957)
Q Consensus 364 ----------------------~l~~~~~ge~e~-~i~~v-f~~a~-------------~~~p~IL~IDEiD~l~~~~~~ 406 (957)
.++.--.|.++. .+..+ .+.|. .....||++||+..|
T Consensus 83 ~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL------ 156 (423)
T COG1239 83 MCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL------ 156 (423)
T ss_pred hhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc------
Confidence 011111233333 11111 11111 112359999999766
Q ss_pred CCchHHHHHHHHHHHHhhcc-----------ccCCCeEEEEecCCCC-CchhhhhCCCCcceeeeecCC-CHHHHHHHHH
Q 002169 407 GGEELSQRMVATLLNLMDGV-----------CRTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIAVP-SPAQRLEILH 473 (957)
Q Consensus 407 ~~~~~~~~i~~~Ll~~ld~l-----------~~~~~v~vI~ttN~~~-~ld~al~r~gRfd~~I~i~~P-~~~~r~~Il~ 473 (957)
...++..|++.+..- .-.-++++|+|+|+.+ +|-|.|+. ||...+.+..| +.++|.+|.+
T Consensus 157 -----~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~ 229 (423)
T COG1239 157 -----DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIR 229 (423)
T ss_pred -----cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHH
Confidence 456778888877651 2234689999999864 67788888 99999988776 6788999998
Q ss_pred HHHcCCCCCCChHHHHHHHH
Q 002169 474 ALLSGMEHSLLDSEVEYLSM 493 (957)
Q Consensus 474 ~~l~~~~~~l~~~~l~~La~ 493 (957)
..+.- . ..++..++.++.
T Consensus 230 r~~~f-~-~~Pe~f~~~~~~ 247 (423)
T COG1239 230 RRLAF-E-AVPEAFLEKYAD 247 (423)
T ss_pred HHHHh-h-cCcHHHHHHHHH
Confidence 76644 2 224444554443
No 454
>PF13173 AAA_14: AAA domain
Probab=98.33 E-value=1.9e-06 Score=83.66 Aligned_cols=121 Identities=25% Similarity=0.335 Sum_probs=70.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcC--CcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcC
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKD 406 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~--~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~ 406 (957)
++.++|+||.||||||+++.++..+. .+++.++..+.........+ +...+.......+.+|||||++.+-
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~----- 74 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP----- 74 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc-----
Confidence 45689999999999999999998876 77888887765442211111 2233322222356799999998762
Q ss_pred CCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh--hCCCCcceeeeecCCCHHH
Q 002169 407 GGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL--RRPGRLDREIEIAVPSPAQ 467 (957)
Q Consensus 407 ~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al--~r~gRfd~~I~i~~P~~~~ 467 (957)
.+...+..+.|. ..+..+|+|+.....+.... .-.||.. .+++.+.+..|
T Consensus 75 -------~~~~~lk~l~d~---~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 -------DWEDALKFLVDN---GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred -------cHHHHHHHHHHh---ccCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 122223333332 13456666665443332211 1235764 46777766554
No 455
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.32 E-value=1.2e-06 Score=86.24 Aligned_cols=88 Identities=25% Similarity=0.454 Sum_probs=59.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCC---cEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGV---NLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~---~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
....+|+|+|++||||+++|++++...+. +|+.++|.++. .++++.+ .+..|||+|+|.+.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~-- 82 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS-- 82 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS---
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC--
Confidence 34678999999999999999999987653 45555665532 3455555 45599999999883
Q ss_pred CcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 404 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
......|+..++... ..++.+|+++..
T Consensus 83 ---------~~~Q~~L~~~l~~~~-~~~~RlI~ss~~ 109 (138)
T PF14532_consen 83 ---------PEAQRRLLDLLKRQE-RSNVRLIASSSQ 109 (138)
T ss_dssp ---------HHHHHHHHHHHHHCT-TTTSEEEEEECC
T ss_pred ---------HHHHHHHHHHHHhcC-CCCeEEEEEeCC
Confidence 344556666666543 455677777654
No 456
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.31 E-value=6.4e-06 Score=98.80 Aligned_cols=112 Identities=20% Similarity=0.188 Sum_probs=64.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEeccccccc--------------------------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQ-------------------------------- 368 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~~~l~~~-------------------------------- 368 (957)
|++++.-+||+|+||+|||+++..++... |.+.++++..+-...
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 78899999999999999999999765321 445555543211000
Q ss_pred c--c--chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 369 N--Y--GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 369 ~--~--ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
+ . .+.+..+..+.+.+....|..++||-+..+...-+. ...+...+..++..+. ..++++|++++...
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~-----~~~~r~~l~~L~~~Lk-~~g~TvLlt~~~~~ 178 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSN-----EAVVRRELRRLFAWLK-QKGVTAVITGERGD 178 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccC-----HHHHHHHHHHHHHHHH-hCCCEEEEEECCcc
Confidence 0 0 011223334444455667889999998876432111 1122334444444443 33667777776544
No 457
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.31 E-value=3.9e-07 Score=102.16 Aligned_cols=110 Identities=23% Similarity=0.341 Sum_probs=73.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEeccccccc-------------c------------------
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVSQ-------------N------------------ 369 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~~~~l~~~-------------~------------------ 369 (957)
++.+.+++.+.|.||+||||||+.|+||+.... --+.+++.++.+- |
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~ 104 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKV 104 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhh
Confidence 467888999999999999999999999975421 1234443322211 0
Q ss_pred ----c-chhHHHHHHHHH--------------------------HHhccCCeEEEEcCccccccCCcCCCchHHHHHHHH
Q 002169 370 ----Y-GESEQALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQRMVAT 418 (957)
Q Consensus 370 ----~-ge~e~~i~~vf~--------------------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~ 418 (957)
. .+..+++.++++ +|....|.+|++||- -+..+..+..+
T Consensus 105 ~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP----------lSaLD~kLR~~ 174 (352)
T COG3842 105 RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP----------LSALDAKLREQ 174 (352)
T ss_pred cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc----------ccchhHHHHHH
Confidence 0 012223444333 456677999999992 12345667777
Q ss_pred HHHHhhccccCCCeEEEEecCCCC
Q 002169 419 LLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 419 Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
+...+..+...-++.+|..|++.+
T Consensus 175 mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 175 MRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred HHHHHHHHHHhcCCeEEEEECCHH
Confidence 777888877777899999998754
No 458
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.31 E-value=4.9e-07 Score=93.04 Aligned_cols=101 Identities=23% Similarity=0.388 Sum_probs=61.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccch-hHHHHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE-SEQALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge-~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
..+.+++|+||||||||+||.+++.++ |..+..++.++++...... ........++... ...+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~-- 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE-- 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee--
Confidence 457899999999999999999999765 7788888888776653211 0111223344433 3469999998532
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
.........|.++++.-... + ..|+|||.
T Consensus 121 -------~~~~~~~~~l~~ii~~R~~~-~-~tIiTSN~ 149 (178)
T PF01695_consen 121 -------PLSEWEAELLFEIIDERYER-K-PTIITSNL 149 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHHT---EEEEEESS
T ss_pred -------eecccccccchhhhhHhhcc-c-CeEeeCCC
Confidence 12233445567777765432 3 46668875
No 459
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=2.2e-05 Score=89.07 Aligned_cols=201 Identities=20% Similarity=0.275 Sum_probs=127.7
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEecccccccc-
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVVSQN- 369 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-----~~~i~i~~~~l~~~~- 369 (957)
..+.|-+.++..+++++..+ +....+..+.+.|-||||||.+..-+-.... ...+++||.++....
T Consensus 150 ~~l~gRe~e~~~v~~F~~~h--------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLH--------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhh--------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 35789999999999997666 4445677899999999999998886654332 245889987643320
Q ss_pred -----c---------chhHHHHHHHHHH-Hhcc-CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeE
Q 002169 370 -----Y---------GESEQALHEVFDS-ASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVL 433 (957)
Q Consensus 370 -----~---------ge~e~~i~~vf~~-a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~ 433 (957)
. +..+......|+. ..+. .+-|+++||+|.|....+. ++-+|..+ .. ....+++
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~--------vLy~lFew-p~-lp~sr~i 291 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT--------VLYTLFEW-PK-LPNSRII 291 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc--------eeeeehhc-cc-CCcceee
Confidence 0 0111222233332 2222 3679999999999844322 22222222 11 2345789
Q ss_pred EEEecCCCCCchhhhhC----CCCcceeeeecCCCHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHcCCCcHH--HHHHH
Q 002169 434 VIAATNRPDSIEPALRR----PGRLDREIEIAVPSPAQRLEILHALLSGMEHSL-LDSEVEYLSMATHGFVGA--DLAAL 506 (957)
Q Consensus 434 vI~ttN~~~~ld~al~r----~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l-~~~~l~~La~~t~g~~ga--Di~~l 506 (957)
+|+.+|..|.-|..|-| .+--...+.|++++.++..+|++..+....... -+..++..|+...|-+|. -.-.+
T Consensus 292 LiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv 371 (529)
T KOG2227|consen 292 LIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDV 371 (529)
T ss_pred eeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHH
Confidence 99999998766644432 111233589999999999999999988765432 345788888888887763 23334
Q ss_pred HHHHHHHH
Q 002169 507 CNEAALVC 514 (957)
Q Consensus 507 ~~~A~~~a 514 (957)
|+.|...+
T Consensus 372 ~R~aiEI~ 379 (529)
T KOG2227|consen 372 CRRAIEIA 379 (529)
T ss_pred HHHHHHHH
Confidence 55554444
No 460
>PRK06526 transposase; Provisional
Probab=98.29 E-value=8e-07 Score=96.52 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=61.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccch-hHHHHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE-SEQALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge-~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
..+.+++|+||||||||+||.+++.++ |..+..++..+++...... ....+...+... ..+.+|+|||++.+..
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF 173 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC
Confidence 346789999999999999999998765 5666666666554432110 011122223322 2467999999987632
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
. ......|..+++..... ..+|++||.+
T Consensus 174 ~---------~~~~~~L~~li~~r~~~--~s~IitSn~~ 201 (254)
T PRK06526 174 E---------PEAANLFFQLVSSRYER--ASLIVTSNKP 201 (254)
T ss_pred C---------HHHHHHHHHHHHHHHhc--CCEEEEcCCC
Confidence 1 12223455555543222 2477788765
No 461
>PRK08181 transposase; Validated
Probab=98.29 E-value=1.4e-06 Score=95.32 Aligned_cols=101 Identities=23% Similarity=0.377 Sum_probs=63.0
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccc-hHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE-SEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~-~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
...+++|+||||||||.||.+++.++ |..++.++.++++...... ........+.... .+.+|+|||++....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~- 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTK- 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccC-
Confidence 35679999999999999999999764 6677777777766543211 1122233444433 456999999986521
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
.......|...++..... .-+|++||.+
T Consensus 182 ----------~~~~~~~Lf~lin~R~~~--~s~IiTSN~~ 209 (269)
T PRK08181 182 ----------DQAETSVLFELISARYER--RSILITANQP 209 (269)
T ss_pred ----------CHHHHHHHHHHHHHHHhC--CCEEEEcCCC
Confidence 122233455555543322 2478888865
No 462
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.29 E-value=3.6e-06 Score=83.35 Aligned_cols=31 Identities=32% Similarity=0.548 Sum_probs=28.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..++|+||+|||||||.|++|...
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4678899999999999999999999999765
No 463
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.28 E-value=3.5e-06 Score=89.32 Aligned_cols=179 Identities=24% Similarity=0.345 Sum_probs=97.2
Q ss_pred CChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-cE--EEEeCCCccc-----c-
Q 002169 649 GGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL-NF--LAVKGPELFS-----K- 719 (957)
Q Consensus 649 ~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~-~~--i~v~~~~l~~-----~- 719 (957)
+|.++..+.|.+.+.. .+...++++||.|+|||++++.+...... .+ +.+....... .
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 4556666666655431 23567999999999999999999988732 11 1111100000 0
Q ss_pred -----------------------------cccchHHHHHHHHHHHHhCC-CeEEEEeCCchhh-hhcCCCCCCCcchHHH
Q 002169 720 -----------------------------WVGESEKAVRSLFAKARANA-PSIIFFDEIDGLA-AIRGKESDGVSVSDRV 768 (957)
Q Consensus 720 -----------------------------~vg~~~~~ir~~f~~A~~~~-p~ILfiDEid~l~-~~r~~~~~~~~~~~~v 768 (957)
........+..+++...... ..||+|||++.+. ... .....
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--------~~~~~ 140 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--------EDKDF 140 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--------TTHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--------chHHH
Confidence 00112344566666655543 3799999999886 111 23556
Q ss_pred HHHHHHHHhccccCCcEEEEEecCCCC------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC-C-CCcccH
Q 002169 769 MSQLLVELDGLHQRVNVTVIAATNRPD------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP-C-SSDVNI 840 (957)
Q Consensus 769 ~~~LL~~ld~~~~~~~v~VI~aTN~~~------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~-~-~~~~~l 840 (957)
+..+...++......++.+|+++.... .-...+. +|+.. +++++.+.++..++++..+++.. + ..+.++
T Consensus 141 ~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 666777777644455555555443221 1122333 37876 99999999999999999887761 1 246678
Q ss_pred HHHHHHccCCc
Q 002169 841 RELACLSEGCT 851 (957)
Q Consensus 841 ~~la~~t~g~s 851 (957)
+++...+.|+.
T Consensus 218 ~~i~~~~gG~P 228 (234)
T PF01637_consen 218 EEIYSLTGGNP 228 (234)
T ss_dssp HHHHHHHTT-H
T ss_pred HHHHHHhCCCH
Confidence 88888888843
No 464
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.28 E-value=3.3e-06 Score=91.82 Aligned_cols=102 Identities=23% Similarity=0.373 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHH-HHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~-~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
.+.+++|+||||+|||+||-|+++++ |..+..+..++++......... .....+... -....+|+|||+...-.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~~- 181 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEPF- 181 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCccC-
Confidence 58899999999999999999999876 6778888888877653211111 111111111 12346999999865421
Q ss_pred CcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 404 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
+......++.++......... |.|+|.+
T Consensus 182 --------~~~~~~~~~q~I~~r~~~~~~--~~tsN~~ 209 (254)
T COG1484 182 --------SQEEADLLFQLISRRYESRSL--IITSNLS 209 (254)
T ss_pred --------CHHHHHHHHHHHHHHHhhccc--eeecCCC
Confidence 122223344455544333333 8888864
No 465
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.27 E-value=1.3e-06 Score=93.64 Aligned_cols=56 Identities=25% Similarity=0.255 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|.++++|....|.+|++||+....+ ......+...|..+... +.+|+++||+.+.+
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD------------~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v 202 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVD------------VAGQKEIYDLLKELRQE-GKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCC------------HHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHh
Confidence 8889999999999999999985543 23333455556655556 88999999988753
No 466
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.26 E-value=1.9e-05 Score=93.27 Aligned_cols=166 Identities=22% Similarity=0.304 Sum_probs=104.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHHHHHHHHHH---------------HhccCC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDS---------------ASQSAP 389 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~---------------a~~~~p 389 (957)
...+++++|++||||+++|+++.... +.+|+.++|..+.... .-..+|.. ......
T Consensus 165 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 238 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL------LESELFGHEKGAFTGAQTLRQGLFERANE 238 (457)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH------HHHHhcCCCCCCCCCCCCCCCCceEECCC
Confidence 35689999999999999999998764 4689999998763321 01111110 111224
Q ss_pred eEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--c-------CCCeEEEEecCCCCCchhhhhCCCCcce----
Q 002169 390 AVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R-------TDGVLVIAATNRPDSIEPALRRPGRLDR---- 456 (957)
Q Consensus 390 ~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--~-------~~~v~vI~ttN~~~~ld~al~r~gRfd~---- 456 (957)
.+|||||+|.+.+ .+...|+..++.-. . ..++.+|++|+.. +. .+.+.|+|..
T Consensus 239 gtl~ld~i~~l~~-----------~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~--l~-~~~~~g~~~~~l~~ 304 (457)
T PRK11361 239 GTLLLDEIGEMPL-----------VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRD--LQ-AMVKEGTFREDLFY 304 (457)
T ss_pred CEEEEechhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCC--HH-HHHHcCCchHHHHH
Confidence 5999999998843 34556777765421 1 1247889998753 22 2233344433
Q ss_pred ---eeeecCCCHHHHHH----HHHHHHcC------CC-CCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 002169 457 ---EIEIAVPSPAQRLE----ILHALLSG------ME-HSLLDSEVEYLSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 457 ---~I~i~~P~~~~r~~----Il~~~l~~------~~-~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
.+.+..|...+|.+ +.+.++.+ .. ..+++..++.|..+.-.-+.++++++++.|...
T Consensus 305 ~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 305 RLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred HhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 36677888777754 22222221 11 356788888888776666778999888887654
No 467
>PRK06526 transposase; Provisional
Probab=98.26 E-value=1.2e-06 Score=95.28 Aligned_cols=101 Identities=17% Similarity=0.333 Sum_probs=58.0
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccc-hHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE-SEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~-~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
.+.+++|+||||||||.+|.+|+.++ |..+..+...+++...... ....+...+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~- 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF- 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC-
Confidence 35679999999999999999998875 4555445554443322110 011122223332 3457999999986521
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
.......+...++..... ..+|++||.+
T Consensus 174 ----------~~~~~~~L~~li~~r~~~--~s~IitSn~~ 201 (254)
T PRK06526 174 ----------EPEAANLFFQLVSSRYER--ASLIVTSNKP 201 (254)
T ss_pred ----------CHHHHHHHHHHHHHHHhc--CCEEEEcCCC
Confidence 122223344444432222 2477888866
No 468
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.26 E-value=2.2e-06 Score=101.08 Aligned_cols=143 Identities=24% Similarity=0.300 Sum_probs=87.6
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC----cEEEE------ecc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV----NLFTV------NGP 363 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~----~~i~i------~~~ 363 (957)
++.++.|....++.+ .+.+..+.+++|+||||||||++++.+++.+.. ..+++ .+.
T Consensus 189 d~~~v~Gq~~~~~al--------------~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~ 254 (506)
T PRK09862 189 DLSDVIGQEQGKRGL--------------EITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNA 254 (506)
T ss_pred CeEEEECcHHHHhhh--------------heeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcc
Confidence 556667766544432 133456789999999999999999999976632 11211 111
Q ss_pred -----cc-----cccc--------cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhc
Q 002169 364 -----EV-----VSQN--------YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 425 (957)
Q Consensus 364 -----~l-----~~~~--------~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~ 425 (957)
.+ ..-. +|.....-...+..|.. .+||+||++.+ ...++..|++.|+.
T Consensus 255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----------~~~~~~~L~~~LE~ 320 (506)
T PRK09862 255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----------ERRTLDALREPIES 320 (506)
T ss_pred ccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----------CHHHHHHHHHHHHc
Confidence 01 0000 01100001123444433 49999999765 34566677777744
Q ss_pred cc-----------cCCCeEEEEecCCCC---------------------CchhhhhCCCCcceeeeecCCCHH
Q 002169 426 VC-----------RTDGVLVIAATNRPD---------------------SIEPALRRPGRLDREIEIAVPSPA 466 (957)
Q Consensus 426 l~-----------~~~~v~vI~ttN~~~---------------------~ld~al~r~gRfd~~I~i~~P~~~ 466 (957)
-. ...++.+|+|+|+.. .++.+++. |||-.+.++.|+.+
T Consensus 321 g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 321 GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 21 134689999999853 36667777 99999999998876
No 469
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.25 E-value=3e-06 Score=92.15 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=63.6
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHH-HHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEK-AVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~-~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
...+++|+||||||||.||-|||.++ |..+..+..++++......... ....-+... -....+|+|||+....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~-- 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEP-- 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCcc--
Confidence 57889999999999999999999886 6677888888887653322111 111112221 1233599999997542
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.....-+.+++.+......... |++||.+..
T Consensus 181 ---------~~~~~~~~~~q~I~~r~~~~~~--~~tsN~~~~ 211 (254)
T COG1484 181 ---------FSQEEADLLFQLISRRYESRSL--IITSNLSFG 211 (254)
T ss_pred ---------CCHHHHHHHHHHHHHHHhhccc--eeecCCChH
Confidence 1222223344444443333233 889997643
No 470
>PRK06921 hypothetical protein; Provisional
Probab=98.25 E-value=4.1e-06 Score=91.75 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=60.1
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccc-ccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDA-IAP 402 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~-l~~ 402 (957)
.+.+++|+||||||||+|+.++|+++ +..++.+...+++....... ......++.. ...++|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCC
Confidence 46789999999999999999999876 45667777655544321111 1112222332 2457999999943 211
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
.. .........|..+++.....+. .+|+|||.
T Consensus 193 ~e-----~~t~~~~~~lf~iin~R~~~~k-~tIitsn~ 224 (266)
T PRK06921 193 KP-----RATEWQIEQMYSVLNYRYLNHK-PILISSEL 224 (266)
T ss_pred Cc-----cCCHHHHHHHHHHHHHHHHCCC-CEEEECCC
Confidence 11 1112223456666665433333 35667765
No 471
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.25 E-value=3.3e-06 Score=91.00 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=62.7
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccch---HHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGES---EKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~---~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
.+++|+|+||||||+||.+||.++ +..++.+..++++....... ......+++... ..++|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 479999999999999999999987 66777787777765432211 112234444433 466999999986421
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
......++.++ ++... .....+|++||..
T Consensus 177 -------s~~~~~~l~~I---i~~Ry-~~~~~tiitSNl~ 205 (244)
T PRK07952 177 -------SRYEKVIINQI---VDRRS-SSKRPTGMLTNSN 205 (244)
T ss_pred -------CHHHHHHHHHH---HHHHH-hCCCCEEEeCCCC
Confidence 11223333333 33322 2234578889854
No 472
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=4.9e-05 Score=86.28 Aligned_cols=225 Identities=20% Similarity=0.202 Sum_probs=142.4
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----CC-cEEEEeCCCccc--
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----GL-NFLAVKGPELFS-- 718 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----~~-~~i~v~~~~l~~-- 718 (957)
+.+.|.+..+..+++++... +....+..+-+.|-||||||.+..-+-... .. ..+.+++..+..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~h---------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLH---------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhh---------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 45678888888888877543 334566779999999999999888554332 22 447788765421
Q ss_pred ----c----c----cc-chHHHHHHHHHHH-HhCC-CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCC
Q 002169 719 ----K----W----VG-ESEKAVRSLFAKA-RANA-PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRV 783 (957)
Q Consensus 719 ----~----~----vg-~~~~~ir~~f~~A-~~~~-p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~ 783 (957)
+ + ++ ..+......|..- .+.. +-++++||+|.|...... ++-.+ -+...+ ...
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~----------vLy~l-Fewp~l-p~s 288 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT----------VLYTL-FEWPKL-PNS 288 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc----------eeeee-hhcccC-Ccc
Confidence 1 1 11 1222333444432 3333 568999999998733211 11111 122222 345
Q ss_pred cEEEEEecCCCCCCChhhhC----CCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHccCCcH--HHH
Q 002169 784 NVTVIAATNRPDKIDPALLR----PGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDV--NIRELACLSEGCTG--ADI 855 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr----~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~--~l~~la~~t~g~sg--~dl 855 (957)
.+++|+..|-.+.-|..|.| -+--.+++.|++++.++..+|++..+...+..... .++..|+...|.|| |.+
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRka 368 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKA 368 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHH
Confidence 78888999988776655442 11224589999999999999999999887766444 36677888888776 455
Q ss_pred HHHHHHHHHHHHHHhcC--------------CCCCCHHHHHHHHHhhCCC
Q 002169 856 SLICREAAISAIEENLD--------------ASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 856 ~~l~~eA~~~a~~~~~~--------------~~~It~~d~~~al~~~~p~ 891 (957)
-.+|+.|.-++-.+... ...|..+|+..++.++...
T Consensus 369 Ldv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s 418 (529)
T KOG2227|consen 369 LDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGS 418 (529)
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccC
Confidence 56788777776554321 1346678888777665433
No 473
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.23 E-value=2.6e-06 Score=94.99 Aligned_cols=102 Identities=17% Similarity=0.294 Sum_probs=63.1
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccch-HHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGES-EKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~-~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
..+|++|+||+|||||.||.|||+++ |.....+..++++....... .......++..+ ...+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 45789999999999999999999987 67777777777655432211 112234444433 34599999997431
Q ss_pred cCCCCCCCcchHHHHHHHHHHH-hccccCCcEEEEEecCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVEL-DGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~l-d~~~~~~~v~VI~aTN~~ 794 (957)
.+......++..+ +... ..+..+|+|||.+
T Consensus 231 ---------~s~~~~~~ll~~Il~~R~-~~~~~ti~TSNl~ 261 (306)
T PRK08939 231 ---------MSSWVRDEVLGVILQYRM-QEELPTFFTSNFD 261 (306)
T ss_pred ---------ccHHHHHHHHHHHHHHHH-HCCCeEEEECCCC
Confidence 2223333344433 3211 1245688899955
No 474
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.23 E-value=4e-06 Score=94.30 Aligned_cols=100 Identities=24% Similarity=0.305 Sum_probs=63.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccch---hHHHHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE---SEQALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge---~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
..+++|+||+|||||+||.++|+++ |..++.++..+++...... ........++... ..++|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC
Confidence 4789999999999999999999876 6778888887776543110 0011111233332 346999999865421
Q ss_pred CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 403 ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 403 ~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
.......|+.+++.....+ ..+|+|||.
T Consensus 261 ---------t~~~~~~Lf~iin~R~~~~-k~tIiTSNl 288 (329)
T PRK06835 261 ---------TEFSKSELFNLINKRLLRQ-KKMIISTNL 288 (329)
T ss_pred ---------CHHHHHHHHHHHHHHHHCC-CCEEEECCC
Confidence 1233456777777653333 345667765
No 475
>PRK09183 transposase/IS protein; Provisional
Probab=98.22 E-value=2.5e-06 Score=93.06 Aligned_cols=102 Identities=22% Similarity=0.349 Sum_probs=62.1
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccc-hHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE-SEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~-~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
...+++|+||||||||+||.+|+... |..+..++..++...+... ....+..++... ...+.+|+|||++....
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~- 178 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF- 178 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC-
Confidence 45679999999999999999997664 5566666666665332211 111233445443 24567999999975421
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
.....+.|+..++...... .+|+|||.+
T Consensus 179 ----------~~~~~~~lf~li~~r~~~~--s~iiTsn~~ 206 (259)
T PRK09183 179 ----------SQEEANLFFQVIAKRYEKG--SMILTSNLP 206 (259)
T ss_pred ----------ChHHHHHHHHHHHHHHhcC--cEEEecCCC
Confidence 1222234555555433332 367788865
No 476
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.22 E-value=2.9e-06 Score=86.01 Aligned_cols=112 Identities=23% Similarity=0.269 Sum_probs=69.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEeccccccc--------ccc-----hhHHHHHHHHHHHhcc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQ--------NYG-----ESEQALHEVFDSASQS 387 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~--------~~g-----e~e~~i~~vf~~a~~~ 387 (957)
++.+.+++.+.|.||+|+|||||++++++..... -+.+++.++... .++ ...++-+-.+..|...
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 3678899999999999999999999999876321 244444332210 010 1112334456677778
Q ss_pred CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCch
Q 002169 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 388 ~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld 445 (957)
.|.++++||-..- .+......+.+.+..+... +..+|++|++.+.+.
T Consensus 100 ~p~illlDEP~~~----------LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 NARLLILDEPTAA----------LTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVF 146 (163)
T ss_pred CCCEEEEECCCcC----------CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHH
Confidence 8999999994321 2233334455555554333 567788887766554
No 477
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.22 E-value=5.2e-06 Score=85.47 Aligned_cols=54 Identities=24% Similarity=0.347 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|.+..|.||++||+.+-++. .+..-+.+|+.+|. .+.+||..||.+..
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDP---------IsT~kIEeLi~eLk-----~~yTIviVTHnmqQ 210 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDP---------ISTLKIEELITELK-----KKYTIVIVTHNMQQ 210 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCc---------hhHHHHHHHHHHHH-----hccEEEEEeCCHHH
Confidence 78899999999999999999976543 23344566777765 36778888887754
No 478
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.21 E-value=3.3e-06 Score=94.16 Aligned_cols=102 Identities=21% Similarity=0.297 Sum_probs=62.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchh-HHHHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGES-EQALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~-e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
.+++++|+||+|||||+|+.++|+++ |..+..+..++++....... .......++... ...+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 46899999999999999999999887 67777777777655432110 112233444433 45699999985431
Q ss_pred CcCCCchHHHHHHHHHHHHh-hccccCCCeEEEEecCCC
Q 002169 404 RKDGGEELSQRMVATLLNLM-DGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~l-d~l~~~~~v~vI~ttN~~ 441 (957)
.+......++..+ +.- -..+...|+|||.+
T Consensus 231 -------~s~~~~~~ll~~Il~~R-~~~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYR-MQEELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHHH-HHCCCeEEEECCCC
Confidence 1222233344433 321 12345678888754
No 479
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.21 E-value=8.4e-06 Score=94.91 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=27.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++-.-|.|.+|+|||||+|.+++..
T Consensus 28 ~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~ 58 (500)
T COG1129 28 SLTVRPGEVHALLGENGAGKSTLMKILSGVY 58 (500)
T ss_pred eeEEeCceEEEEecCCCCCHHHHHHHHhCcc
Confidence 4778899999999999999999999999654
No 480
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.20 E-value=7.6e-06 Score=92.20 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=24.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
.+++-+-|.||+|+||||.++.+|+++.-
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~P 126 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKP 126 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCcccc
Confidence 35667789999999999999999988743
No 481
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.20 E-value=1.9e-05 Score=93.68 Aligned_cols=189 Identities=21% Similarity=0.254 Sum_probs=115.5
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccch
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge 372 (957)
.++.|-......+.+.+... .....+|+++|++|||||++|+++.... +.+|+.++|..+....
T Consensus 138 ~~lig~s~~~~~l~~~~~~~----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~--- 204 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRL----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL--- 204 (469)
T ss_pred ccceecCHHHHHHHHHHHHH----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH---
Confidence 45666666555555543211 1346679999999999999999999875 4689999998763221
Q ss_pred hHHHHHHHHHHH---------------hccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--c-------
Q 002169 373 SEQALHEVFDSA---------------SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--R------- 428 (957)
Q Consensus 373 ~e~~i~~vf~~a---------------~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--~------- 428 (957)
.-..+|... .......|||||+|.+. ......|+..++.-. .
T Consensus 205 ---~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~ 270 (469)
T PRK10923 205 ---IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYAPV 270 (469)
T ss_pred ---HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC-----------HHHHHHHHHHHhcCcEEeCCCCCeE
Confidence 111122110 11124589999999884 334456777765421 1
Q ss_pred CCCeEEEEecCCCC-------CchhhhhCCCCcceeeeecCCCHHHHHH----HHHHHHc----CCC---CCCChHHHHH
Q 002169 429 TDGVLVIAATNRPD-------SIEPALRRPGRLDREIEIAVPSPAQRLE----ILHALLS----GME---HSLLDSEVEY 490 (957)
Q Consensus 429 ~~~v~vI~ttN~~~-------~ld~al~r~gRfd~~I~i~~P~~~~r~~----Il~~~l~----~~~---~~l~~~~l~~ 490 (957)
..++.+|++|+..- .+.+.|.. ||. .+.+..|...+|.+ +++.++. ..+ ..+++..+..
T Consensus 271 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 347 (469)
T PRK10923 271 KVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAA 347 (469)
T ss_pred EeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHH
Confidence 12468888887531 22233333 442 25666776666643 3333332 221 2467788888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 491 LSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 491 La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
|..+.-.-+.++|+++++.+...+
T Consensus 348 L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 348 LTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHhCCCCChHHHHHHHHHHHHHhC
Confidence 888776677889999998876543
No 482
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.20 E-value=4.2e-06 Score=84.87 Aligned_cols=109 Identities=17% Similarity=0.190 Sum_probs=69.9
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCCCccc--------cccc-----chHHHHHHHHHHHHhCCC
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFS--------KWVG-----ESEKAVRSLFAKARANAP 740 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~l~~--------~~vg-----~~~~~ir~~f~~A~~~~p 740 (957)
.+.+...+.|.||+|+|||||.++|++... ..-+.+++.++.. ..++ ...+..|..+.+|....|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p 101 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNA 101 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCC
Confidence 345566699999999999999999998753 2234444422211 1111 123455778899999999
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
.+|++||+.+-++.. ..+.+.+++.++. .. +..+|++||+++.+
T Consensus 102 ~illlDEP~~~LD~~---------~~~~l~~~l~~~~---~~-~~tiii~sh~~~~~ 145 (163)
T cd03216 102 RLLILDEPTAALTPA---------EVERLFKVIRRLR---AQ-GVAVIFISHRLDEV 145 (163)
T ss_pred CEEEEECCCcCCCHH---------HHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 999999998654322 2333333444432 22 56788899987643
No 483
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.20 E-value=3.3e-06 Score=86.99 Aligned_cols=113 Identities=21% Similarity=0.307 Sum_probs=67.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEecccccccc---------------------------cchh
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQN---------------------------YGES 373 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~~---------------------------~ge~ 373 (957)
++.+.+++.+.|.||+|+|||||++++++..... -+.+++.++.... ..+.
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 4667899999999999999999999999876321 2445544332100 0000
Q ss_pred --HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCch
Q 002169 374 --EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 374 --e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld 445 (957)
-++-+-.+..+....|.++++||--.- .+......+.+.+..+....+..+|++|+.++.+.
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~----------LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSH----------LDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 011222233556678999999994221 12233344555555553333567888888776554
No 484
>PF13173 AAA_14: AAA domain
Probab=98.19 E-value=3.7e-06 Score=81.63 Aligned_cols=120 Identities=20% Similarity=0.238 Sum_probs=67.6
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE 758 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~ 758 (957)
+-++|+||.||||||+++.++.... .+++.++..+.......... +...+.......+.+|||||++.+-.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~----- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD----- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc-----
Confidence 4589999999999999999998876 77778877665332111111 22222222222567999999997621
Q ss_pred CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh--hhhCCCCcceecccCCCCHHH
Q 002169 759 SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP--ALLRPGRFDRLLYVGPPNETD 820 (957)
Q Consensus 759 ~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~--aLlr~gRfd~~i~~~~P~~~e 820 (957)
....+-...|. ..+..||+++.....+.. +-.-+||.. .+.+.+.+..|
T Consensus 76 ---------~~~~lk~l~d~---~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 76 ---------WEDALKFLVDN---GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred ---------HHHHHHHHHHh---ccCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 11122222231 124556666554433311 111236864 66777776654
No 485
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.18 E-value=6.4e-06 Score=86.65 Aligned_cols=113 Identities=24% Similarity=0.364 Sum_probs=76.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEeccccccc--------------------------------
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQ-------------------------------- 368 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~-------------------------------- 368 (957)
++.+.+++.+-|+|++|||||||+|++|+..... -+.+++..+..+
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~ 106 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS 106 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHh
Confidence 4678899999999999999999999999765321 133333211110
Q ss_pred ------ccchhHHHHHHHHH---------------------------HHhccCCeEEEEcCccccccCCcCCCchHHHHH
Q 002169 369 ------NYGESEQALHEVFD---------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQRM 415 (957)
Q Consensus 369 ------~~ge~e~~i~~vf~---------------------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i 415 (957)
..++.++++.++++ +|..-.|.+|++||.- +..+-.+
T Consensus 107 Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt----------SaLD~si 176 (252)
T COG1124 107 EPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT----------SALDVSV 176 (252)
T ss_pred hhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch----------hhhcHHH
Confidence 01122333444443 4556679999999943 2345667
Q ss_pred HHHHHHHhhccccCCCeEEEEecCCCCCch
Q 002169 416 VATLLNLMDGVCRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 416 ~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld 445 (957)
.+++++++..+.+..+..+|+.++....+.
T Consensus 177 Qa~IlnlL~~l~~~~~lt~l~IsHdl~~v~ 206 (252)
T COG1124 177 QAQILNLLLELKKERGLTYLFISHDLALVE 206 (252)
T ss_pred HHHHHHHHHHHHHhcCceEEEEeCcHHHHH
Confidence 888999999888888889999998765443
No 486
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.18 E-value=4.6e-06 Score=87.41 Aligned_cols=57 Identities=32% Similarity=0.451 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|.+..|.|||+||+++.++. ....++++|+..+.. .-+.++|+.||+.+.+
T Consensus 153 RvaLARAialdPell~~DEPtsGLDP---------I~a~~~~~LI~~L~~---~lg~T~i~VTHDl~s~ 209 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDP---------ISAGVIDELIRELND---ALGLTVIMVTHDLDSL 209 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCc---------chHHHHHHHHHHHHH---hhCCEEEEEECChHHH
Confidence 77899999999999999999976543 345566667666653 3478899999987653
No 487
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.18 E-value=5.1e-06 Score=93.44 Aligned_cols=101 Identities=18% Similarity=0.298 Sum_probs=63.4
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccc---hHHHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE---SEKAVRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~---~~~~ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
..+++|+||+|||||.||.|||+++ +..++.+..++++...... ........++... ...+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~- 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK- 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC-
Confidence 3789999999999999999999986 6677788877775543210 0111111233333 34599999997542
Q ss_pred hcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 754 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 754 ~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
......+.|...++..... +..+|++||.+
T Consensus 260 ----------~t~~~~~~Lf~iin~R~~~-~k~tIiTSNl~ 289 (329)
T PRK06835 260 ----------ITEFSKSELFNLINKRLLR-QKKMIISTNLS 289 (329)
T ss_pred ----------CCHHHHHHHHHHHHHHHHC-CCCEEEECCCC
Confidence 1233345566666544332 23477888854
No 488
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.17 E-value=3.6e-06 Score=86.45 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=68.1
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCCCc--ccccc-cchHHHHHHHHHHHHhCCCeEEEEeCCchh
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPEL--FSKWV-GESEKAVRSLFAKARANAPSIIFFDEIDGL 751 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~l--~~~~v-g~~~~~ir~~f~~A~~~~p~ILfiDEid~l 751 (957)
+.+..-+.|.||+|+|||||+++|++... ..-+.+++..+ ..... =...+..|..+.+|....|.++++||+.+-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~ 101 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAY 101 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 34555689999999999999999998752 22344433211 00110 112345577788888899999999999865
Q ss_pred hhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 752 AAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 752 ~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
++. .....+...+.......+..||++||+.+.+
T Consensus 102 LD~------------~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~ 135 (177)
T cd03222 102 LDI------------EQRLNAARAIRRLSEEGKKTALVVEHDLAVL 135 (177)
T ss_pred CCH------------HHHHHHHHHHHHHHHcCCCEEEEEECCHHHH
Confidence 533 2222333333333223336788999987653
No 489
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.17 E-value=1.2e-06 Score=93.89 Aligned_cols=57 Identities=25% Similarity=0.244 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..++.+.++.|.||++||+.+..+.. ....++..+..+....+.++|.+||+.+.+
T Consensus 146 RvaIA~vLa~~P~iliLDEPta~LD~~------------~~~~l~~~l~~L~~~~~~tii~~tHd~~~~ 202 (235)
T COG1122 146 RVAIAGVLAMGPEILLLDEPTAGLDPK------------GRRELLELLKKLKEEGGKTIIIVTHDLELV 202 (235)
T ss_pred eHHhhHHHHcCCCEEEEcCCCCCCCHH------------HHHHHHHHHHHHHhcCCCeEEEEeCcHHHH
Confidence 677888899999999999999876543 223455555555555567899999988764
No 490
>PRK06921 hypothetical protein; Provisional
Probab=98.17 E-value=6.6e-06 Score=90.10 Aligned_cols=105 Identities=16% Similarity=0.245 Sum_probs=58.8
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCch-hhh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDG-LAA 753 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~-l~~ 753 (957)
...+++|+||||||||.||.|||+++ +..++.+...+++....... ......++.. ....+|+|||++. +.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEeccccccCC
Confidence 45679999999999999999999875 45566666555543321111 1112222332 3356999999953 111
Q ss_pred hcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 754 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 754 ~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
. ..........|...++..... +..+|++||.+
T Consensus 193 ~-------e~~t~~~~~~lf~iin~R~~~-~k~tIitsn~~ 225 (266)
T PRK06921 193 K-------PRATEWQIEQMYSVLNYRYLN-HKPILISSELT 225 (266)
T ss_pred C-------ccCCHHHHHHHHHHHHHHHHC-CCCEEEECCCC
Confidence 0 011222233455555443322 23367788854
No 491
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.17 E-value=5.8e-06 Score=83.64 Aligned_cols=118 Identities=23% Similarity=0.433 Sum_probs=74.9
Q ss_pred HHHHHhcCCCCCCc--ceeeCCCCChhhHHHHHHHHHhCC--cEEEEeCCCc------------------------ccc-
Q 002169 669 QEAFKRIGTRPPTG--ILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPEL------------------------FSK- 719 (957)
Q Consensus 669 ~~~~~~l~~~~~~g--iLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~~~l------------------------~~~- 719 (957)
+++++++.+..++| +.+.||+|.||||+.|.|..+... .-+.+++-++ +..
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~ 94 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDR 94 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccc
Confidence 55666666666666 889999999999999999876421 1122222111 000
Q ss_pred -----------------------------cccch------------HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC
Q 002169 720 -----------------------------WVGES------------EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE 758 (957)
Q Consensus 720 -----------------------------~vg~~------------~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~ 758 (957)
|+|-. .++.|..+++|..+.|.+|+-||++.=
T Consensus 95 tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGN------- 167 (223)
T COG2884 95 TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGN------- 167 (223)
T ss_pred hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCC-------
Confidence 12211 122378899999999999999999832
Q ss_pred CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 759 SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 759 ~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
.....-.++++.++.+. ..+.+|++|||+.+.++.
T Consensus 168 -----LDp~~s~~im~lfeein-r~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 168 -----LDPDLSWEIMRLFEEIN-RLGTTVLMATHDLELVNR 202 (223)
T ss_pred -----CChHHHHHHHHHHHHHh-hcCcEEEEEeccHHHHHh
Confidence 23333444555555543 337899999997765543
No 492
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.16 E-value=3.3e-06 Score=90.87 Aligned_cols=114 Identities=22% Similarity=0.358 Sum_probs=71.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEecccccc--------------------------------c
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVS--------------------------------Q 368 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~--------------------------------~ 368 (957)
++.+++++.+.|.||+|||||||.|++++.+... -+.+++.++.. .
T Consensus 22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR 101 (258)
T COG1120 22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGR 101 (258)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcC
Confidence 4677889999999999999999999999876421 13333221111 0
Q ss_pred -----ccc----hhHHHHHH--------------------------HHHHHhccCCeEEEEcCccccccCCcCCCchHHH
Q 002169 369 -----NYG----ESEQALHE--------------------------VFDSASQSAPAVVFIDELDAIAPARKDGGEELSQ 413 (957)
Q Consensus 369 -----~~g----e~e~~i~~--------------------------vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~ 413 (957)
+.+ +-+..+.. .+..|....|.||++||-- +..+-
T Consensus 102 ~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPT----------s~LDi 171 (258)
T COG1120 102 YPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPT----------SHLDI 171 (258)
T ss_pred CcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCc----------cccCH
Confidence 001 11112222 2335667789999999931 22333
Q ss_pred HHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhh
Q 002169 414 RMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 449 (957)
Q Consensus 414 ~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~ 449 (957)
.-..++++++..+..+.+..+|++.++ ++-|++
T Consensus 172 ~~Q~evl~ll~~l~~~~~~tvv~vlHD---lN~A~r 204 (258)
T COG1120 172 AHQIEVLELLRDLNREKGLTVVMVLHD---LNLAAR 204 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecC---HHHHHH
Confidence 444567888888877778899999854 455554
No 493
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.15 E-value=8.2e-06 Score=78.88 Aligned_cols=99 Identities=22% Similarity=0.363 Sum_probs=58.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc--------CCcEEEEeccccccc--------------ccc--hhHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS--------GVNLFTVNGPEVVSQ--------------NYG--ESEQALHEVFDS 383 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l--------~~~~i~i~~~~l~~~--------------~~g--e~e~~i~~vf~~ 383 (957)
..+.++++||||+|||++++.++..+ ..+++.++++...+. ... ........+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35678999999999999999999887 677788877543311 001 122333334444
Q ss_pred HhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 384 ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 384 a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
.......+|+|||+|.+. .......|..+++ ..++.+|.+.++
T Consensus 83 l~~~~~~~lviDe~~~l~----------~~~~l~~l~~l~~----~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLF----------SDEFLEFLRSLLN----ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHH----------THHHHHHHHHHTC----SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcC----------CHHHHHHHHHHHh----CCCCeEEEEECh
Confidence 444444599999999874 1334444544444 556666666543
No 494
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.15 E-value=3.4e-06 Score=89.05 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=27.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.++.++.+.+.||+|||||||...++...
T Consensus 25 ~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 25 NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4778899999999999999999999999654
No 495
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.15 E-value=5.2e-06 Score=89.07 Aligned_cols=110 Identities=20% Similarity=0.283 Sum_probs=78.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEecccccccccchhHHHHHHHH-------------------
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQNYGESEQALHEVF------------------- 381 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~~~ge~e~~i~~vf------------------- 381 (957)
++.+..++.+-|+|++||||||++|++.+..... -+.+++.++......+....+.+++
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 4778899999999999999999999999876532 2445554443322112222333333
Q ss_pred --------HHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 382 --------DSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 382 --------~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
.+|....|.+++.||.-+. .+-.+.++.+++|..++...+...+++++...
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSa----------LDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSA----------LDVSVQAQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhh----------cchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 3566778999999996544 34567788999999998888899999997654
No 496
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.15 E-value=3.6e-06 Score=88.83 Aligned_cols=69 Identities=28% Similarity=0.364 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCC
Q 002169 727 AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGR 806 (957)
Q Consensus 727 ~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gR 806 (957)
+-|..+++|....|.||+-||+..-++.. ... .++..+..+....+.+||++||+++. .. +
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~--------t~~----~V~~ll~~~~~~~g~tii~VTHd~~l-----A~--~ 208 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSK--------TAK----EVLELLRELNKERGKTIIMVTHDPEL-----AK--Y 208 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChH--------HHH----HHHHHHHHHHHhcCCEEEEEcCCHHH-----HH--h
Confidence 34888999999999999999998544322 122 23333333334557789999997644 44 6
Q ss_pred cceecccC
Q 002169 807 FDRLLYVG 814 (957)
Q Consensus 807 fd~~i~~~ 814 (957)
+|++|++.
T Consensus 209 ~dr~i~l~ 216 (226)
T COG1136 209 ADRVIELK 216 (226)
T ss_pred CCEEEEEe
Confidence 67777663
No 497
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.15 E-value=6.6e-06 Score=101.45 Aligned_cols=134 Identities=22% Similarity=0.213 Sum_probs=81.4
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCC-------cEEEEecccccc-c--ccchhHHHHHHHHHHHhccCCeEEEEc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGV-------NLFTVNGPEVVS-Q--NYGESEQALHEVFDSASQSAPAVVFID 395 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~-------~~i~i~~~~l~~-~--~~ge~e~~i~~vf~~a~~~~p~IL~ID 395 (957)
++..-+|||+|+||||||++|+++++.... .+..+.+..... . ..|+..... ..+..| ...+++||
T Consensus 489 iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~-GaLvlA---dgGtL~ID 564 (915)
T PTZ00111 489 FRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQP-GAVVLA---NGGVCCID 564 (915)
T ss_pred ccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccC-CcEEEc---CCCeEEec
Confidence 344569999999999999999999986532 222222222111 0 001100000 011112 23599999
Q ss_pred CccccccCCcCCCchHHHHHHHHHHHHhhccc-----------cCCCeEEEEecCCCC-------------CchhhhhCC
Q 002169 396 ELDAIAPARKDGGEELSQRMVATLLNLMDGVC-----------RTDGVLVIAATNRPD-------------SIEPALRRP 451 (957)
Q Consensus 396 EiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-----------~~~~v~vI~ttN~~~-------------~ld~al~r~ 451 (957)
|+|.+. ......|++.|+.-. -..++.||+++|+.. .+++++++
T Consensus 565 Eidkms-----------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS- 632 (915)
T PTZ00111 565 ELDKCH-----------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT- 632 (915)
T ss_pred chhhCC-----------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh-
Confidence 999873 334456777775421 124689999999853 46788998
Q ss_pred CCcceee-eecCCCHHHHHHHHHHHH
Q 002169 452 GRLDREI-EIAVPSPAQRLEILHALL 476 (957)
Q Consensus 452 gRfd~~I-~i~~P~~~~r~~Il~~~l 476 (957)
|||-.+ .++.|+.+.-..|.+..+
T Consensus 633 -RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 633 -RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred -hhcEEEEecCCCChHHHHHHHHHHH
Confidence 999864 556777766566655544
No 498
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.15 E-value=4.9e-06 Score=87.55 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|-.+++|..-.|.+|++||+.+.++ -.++.++++.+..+....+..+|++||+...
T Consensus 149 RiaIARAL~~~PklLIlDEptSaLD------------~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~ 204 (252)
T COG1124 149 RIAIARALIPEPKLLILDEPTSALD------------VSVQAQILNLLLELKKERGLTYLFISHDLAL 204 (252)
T ss_pred HHHHHHHhccCCCEEEecCchhhhc------------HHHHHHHHHHHHHHHHhcCceEEEEeCcHHH
Confidence 7778899999999999999997653 3455677777777777778999999997654
No 499
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.14 E-value=6.7e-06 Score=91.87 Aligned_cols=109 Identities=23% Similarity=0.310 Sum_probs=70.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEeccccccc----------------c---------------
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQ----------------N--------------- 369 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~----------------~--------------- 369 (957)
++.+..++.+.|.||+||||||+.|+||+..... -+.+++.++..- |
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 4677889999999999999999999999765321 233443322110 0
Q ss_pred ----cchhHHHHHHHHH--------------------------HHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHH
Q 002169 370 ----YGESEQALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATL 419 (957)
Q Consensus 370 ----~ge~e~~i~~vf~--------------------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~L 419 (957)
..+.+++++++-+ +|.-..|.++++||= -+..+..+...+
T Consensus 103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEP----------lSnLDa~lR~~m 172 (338)
T COG3839 103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEP----------LSNLDAKLRVLM 172 (338)
T ss_pred CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCc----------hhHhhHHHHHHH
Confidence 0133344444433 345567999999992 233455666667
Q ss_pred HHHhhccccCCCeEEEEecCCC
Q 002169 420 LNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 420 l~~ld~l~~~~~v~vI~ttN~~ 441 (957)
...+..+.++-++++|-.|++.
T Consensus 173 r~ei~~lh~~l~~T~IYVTHDq 194 (338)
T COG3839 173 RSEIKKLHERLGTTTIYVTHDQ 194 (338)
T ss_pred HHHHHHHHHhcCCcEEEEcCCH
Confidence 7777777666677888888754
No 500
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.14 E-value=7.7e-06 Score=81.49 Aligned_cols=110 Identities=23% Similarity=0.265 Sum_probs=64.3
Q ss_pred ceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc----------------------cccc--hHHHHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK----------------------WVGE--SEKAVRSLFAKA 735 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~----------------------~vg~--~~~~ir~~f~~A 735 (957)
++++||||+|||++++.++... +.+.+.++....... +... .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 455555554432210 0000 111123345666
Q ss_pred HhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 736 RANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 736 ~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
....|.+|+|||+..+....... ........+.+..+...+ ...++.+|+++|....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA----RKGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----hcCCceEEEEEecCCc
Confidence 77888999999999887543210 001111223333333333 3347888888886654
Done!