Query 002169
Match_columns 957
No_of_seqs 654 out of 5151
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:18:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 8.9E-96 3E-100 891.8 31.4 606 188-907 130-766 (806)
2 1ypw_A Transitional endoplasmi 100.0 1.2E-70 4E-75 682.2 19.9 601 192-906 134-765 (806)
3 4b4t_J 26S protease regulatory 100.0 5.5E-51 1.9E-55 460.8 25.1 262 628-891 130-392 (405)
4 4b4t_I 26S protease regulatory 100.0 1.6E-48 5.5E-53 441.4 24.7 254 636-891 172-426 (437)
5 4b4t_L 26S protease subunit RP 100.0 8.6E-48 2.9E-52 441.6 25.7 260 630-891 165-425 (437)
6 4b4t_H 26S protease regulatory 100.0 1.6E-47 5.5E-52 437.2 27.6 252 637-890 200-452 (467)
7 4b4t_M 26S protease regulatory 100.0 1.7E-47 5.9E-52 438.7 24.8 255 635-891 170-425 (434)
8 4b4t_K 26S protease regulatory 100.0 2.8E-46 9.6E-51 428.4 29.2 251 637-889 163-415 (428)
9 4b4t_J 26S protease regulatory 100.0 2.6E-44 8.9E-49 406.4 29.8 260 255-517 109-372 (405)
10 4b4t_I 26S protease regulatory 100.0 2.7E-43 9.3E-48 398.7 27.8 229 288-517 174-406 (437)
11 4b4t_H 26S protease regulatory 100.0 2.9E-42 1E-46 393.9 29.1 230 288-518 201-434 (467)
12 4b4t_L 26S protease subunit RP 100.0 2.1E-42 7.2E-47 396.9 28.0 228 289-517 174-405 (437)
13 4b4t_M 26S protease regulatory 100.0 2.1E-42 7.1E-47 396.6 26.3 229 288-517 173-405 (434)
14 3cf2_A TER ATPase, transitiona 100.0 3.4E-43 1.2E-47 429.2 18.2 299 639-951 197-525 (806)
15 4b4t_K 26S protease regulatory 100.0 2.9E-41 9.8E-46 387.0 30.0 229 289-518 165-398 (428)
16 3cf0_A Transitional endoplasmi 100.0 2E-39 6.8E-44 359.1 23.3 272 633-904 2-301 (301)
17 2x8a_A Nuclear valosin-contain 100.0 1E-37 3.6E-42 340.6 24.7 252 639-892 3-268 (274)
18 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.8E-37 6.2E-42 346.6 25.5 263 637-904 3-319 (322)
19 3hu3_A Transitional endoplasmi 100.0 6.5E-37 2.2E-41 359.2 30.5 347 193-653 135-484 (489)
20 3eie_A Vacuolar protein sortin 100.0 1.5E-36 5.2E-41 339.1 21.8 266 635-905 7-319 (322)
21 2qp9_X Vacuolar protein sortin 100.0 6.7E-36 2.3E-40 338.4 23.0 267 634-905 39-352 (355)
22 2ce7_A Cell division protein F 100.0 2.7E-34 9.1E-39 334.5 28.9 248 640-890 10-258 (476)
23 1r6b_X CLPA protein; AAA+, N-t 100.0 1.7E-33 5.9E-38 349.2 35.7 441 293-869 183-718 (758)
24 2zan_A Vacuolar protein sortin 100.0 7.3E-35 2.5E-39 339.3 17.4 264 635-903 123-440 (444)
25 2x8a_A Nuclear valosin-contain 100.0 6.9E-34 2.3E-38 310.4 22.2 229 291-519 5-238 (274)
26 1xwi_A SKD1 protein; VPS4B, AA 100.0 8.2E-33 2.8E-37 308.9 30.0 228 291-520 7-236 (322)
27 3h4m_A Proteasome-activating n 100.0 3.6E-33 1.2E-37 305.5 26.0 263 639-903 10-279 (285)
28 1lv7_A FTSH; alpha/beta domain 100.0 6.3E-33 2.2E-37 299.4 27.5 248 639-889 5-253 (257)
29 3pxi_A Negative regulator of g 100.0 1.3E-32 4.6E-37 341.0 33.7 485 293-870 177-728 (758)
30 3hu3_A Transitional endoplasmi 100.0 6E-33 2.1E-37 325.5 22.9 250 640-891 198-462 (489)
31 3eie_A Vacuolar protein sortin 100.0 2.9E-32 1E-36 304.5 25.0 230 290-521 12-242 (322)
32 1qvr_A CLPB protein; coiled co 100.0 1.9E-31 6.5E-36 334.4 32.2 508 292-870 166-823 (854)
33 3b9p_A CG5977-PA, isoform A; A 100.0 3.3E-32 1.1E-36 299.8 22.1 267 634-905 9-293 (297)
34 2qp9_X Vacuolar protein sortin 100.0 1.7E-31 6E-36 302.2 27.1 228 291-520 46-274 (355)
35 3d8b_A Fidgetin-like protein 1 100.0 7E-32 2.4E-36 305.7 23.8 264 635-903 73-353 (357)
36 2qz4_A Paraplegin; AAA+, SPG7, 100.0 6.1E-32 2.1E-36 291.5 20.0 248 641-891 1-252 (262)
37 2dhr_A FTSH; AAA+ protein, hex 100.0 4.3E-32 1.5E-36 317.7 20.1 248 641-891 26-274 (499)
38 1ixz_A ATP-dependent metallopr 100.0 2.6E-31 8.8E-36 286.3 23.1 248 635-885 5-253 (254)
39 3cf0_A Transitional endoplasmi 100.0 1.2E-31 4E-36 296.8 19.5 228 291-519 10-241 (301)
40 3vfd_A Spastin; ATPase, microt 100.0 7.9E-31 2.7E-35 300.5 24.3 270 630-904 99-385 (389)
41 2zan_A Vacuolar protein sortin 100.0 1.3E-30 4.3E-35 303.6 23.5 229 290-520 128-358 (444)
42 2ce7_A Cell division protein F 100.0 4.3E-30 1.5E-34 299.1 27.3 225 292-517 12-239 (476)
43 2r62_A Cell division protease 100.0 2.6E-32 8.8E-37 296.2 6.2 250 639-891 4-256 (268)
44 1iy2_A ATP-dependent metallopr 100.0 1.3E-29 4.4E-34 277.0 24.4 244 639-885 33-277 (278)
45 1ypw_A Transitional endoplasmi 100.0 4.8E-30 1.6E-34 318.4 19.8 250 640-891 198-462 (806)
46 3h4m_A Proteasome-activating n 100.0 6.1E-29 2.1E-33 271.9 26.0 227 291-518 12-242 (285)
47 1lv7_A FTSH; alpha/beta domain 100.0 6.6E-29 2.2E-33 267.9 24.8 228 292-520 8-238 (257)
48 3d8b_A Fidgetin-like protein 1 100.0 1.3E-28 4.3E-33 279.0 25.0 226 290-518 78-306 (357)
49 3b9p_A CG5977-PA, isoform A; A 100.0 9.7E-29 3.3E-33 272.1 23.2 225 291-518 16-244 (297)
50 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.8E-28 6.3E-33 264.2 22.8 228 293-520 3-235 (262)
51 2c9o_A RUVB-like 1; hexameric 100.0 3.2E-29 1.1E-33 293.0 13.5 360 292-889 33-438 (456)
52 2dhr_A FTSH; AAA+ protein, hex 100.0 4E-28 1.4E-32 284.1 21.2 226 292-518 27-255 (499)
53 1ixz_A ATP-dependent metallopr 100.0 1.7E-27 5.8E-32 256.4 23.9 227 291-518 11-240 (254)
54 3vfd_A Spastin; ATPase, microt 100.0 3.6E-27 1.2E-31 270.1 26.5 226 291-519 110-338 (389)
55 1iy2_A ATP-dependent metallopr 99.9 3.4E-26 1.1E-30 249.9 24.5 227 291-518 35-264 (278)
56 2r62_A Cell division protease 99.9 6.3E-28 2.1E-32 261.6 -0.4 225 292-517 7-236 (268)
57 3t15_A Ribulose bisphosphate c 99.9 2.1E-25 7E-30 245.8 8.9 176 676-857 32-222 (293)
58 1g41_A Heat shock protein HSLU 99.9 1.5E-23 5.1E-28 240.9 23.3 169 297-474 16-190 (444)
59 3t15_A Ribulose bisphosphate c 99.9 1.2E-24 4E-29 239.8 12.4 178 321-505 28-222 (293)
60 3cmw_A Protein RECA, recombina 99.9 2.4E-23 8.3E-28 269.4 6.5 153 641-794 1015-1218(1706)
61 2c9o_A RUVB-like 1; hexameric 99.9 9.5E-24 3.3E-28 246.6 -2.3 204 640-861 31-262 (456)
62 3syl_A Protein CBBX; photosynt 99.8 2.3E-20 7.7E-25 206.1 19.3 215 297-520 32-268 (309)
63 3syl_A Protein CBBX; photosynt 99.8 1.5E-20 5.2E-25 207.5 16.5 226 645-882 30-280 (309)
64 1r6b_X CLPA protein; AAA+, N-t 99.8 3.5E-20 1.2E-24 229.8 20.7 285 642-952 182-503 (758)
65 3pxi_A Negative regulator of g 99.8 3.8E-20 1.3E-24 229.4 13.8 271 640-952 174-536 (758)
66 3pvs_A Replication-associated 99.8 6.3E-19 2.1E-23 204.7 18.7 247 639-926 19-285 (447)
67 3uk6_A RUVB-like 2; hexameric 99.8 9E-19 3.1E-23 198.1 19.6 221 641-889 39-331 (368)
68 1qvr_A CLPB protein; coiled co 99.8 1.1E-18 3.6E-23 219.0 19.1 202 641-867 165-393 (854)
69 3pfi_A Holliday junction ATP-d 99.8 5.5E-18 1.9E-22 189.6 22.8 219 639-891 22-257 (338)
70 3m6a_A ATP-dependent protease 99.8 1E-19 3.5E-24 216.7 8.6 227 642-888 77-341 (543)
71 1ofh_A ATP-dependent HSL prote 99.8 1.1E-18 3.9E-23 192.0 15.0 241 646-889 15-300 (310)
72 1hqc_A RUVB; extended AAA-ATPa 99.8 8.3E-18 2.8E-22 186.7 20.1 218 640-890 6-240 (324)
73 1g41_A Heat shock protein HSLU 99.8 1.2E-19 4E-24 208.6 4.7 169 646-825 15-188 (444)
74 1d2n_A N-ethylmaleimide-sensit 99.7 6.1E-18 2.1E-22 183.7 14.7 228 646-891 33-267 (272)
75 3hws_A ATP-dependent CLP prote 99.7 5E-18 1.7E-22 192.3 14.0 237 647-885 16-346 (363)
76 3uk6_A RUVB-like 2; hexameric 99.7 5.6E-17 1.9E-21 183.4 18.6 205 293-520 41-316 (368)
77 3m6a_A ATP-dependent protease 99.7 1.5E-17 5.1E-22 198.0 13.0 200 296-512 81-313 (543)
78 1ofh_A ATP-dependent HSL prote 99.7 7E-17 2.4E-21 177.6 17.1 217 297-515 16-274 (310)
79 3hws_A ATP-dependent CLP prote 99.7 1.1E-16 3.8E-21 181.2 18.3 221 297-519 16-327 (363)
80 2chg_A Replication factor C sm 99.7 8.6E-16 2.9E-20 159.2 22.2 203 639-886 10-224 (226)
81 3pfi_A Holliday junction ATP-d 99.7 6.4E-16 2.2E-20 172.8 22.0 194 293-515 26-235 (338)
82 1d2n_A N-ethylmaleimide-sensit 99.7 2.2E-16 7.4E-21 171.4 17.3 205 297-510 34-245 (272)
83 2v1u_A Cell division control p 99.7 1.2E-15 4.3E-20 172.5 23.8 225 643-889 16-277 (387)
84 2z4s_A Chromosomal replication 99.7 3.3E-16 1.1E-20 181.9 17.9 221 641-890 100-334 (440)
85 3u61_B DNA polymerase accessor 99.7 3.3E-16 1.1E-20 174.2 17.0 203 639-886 19-235 (324)
86 4akg_A Glutathione S-transfera 99.7 7.3E-16 2.5E-20 208.0 22.5 356 327-749 1265-1677(2695)
87 1um8_A ATP-dependent CLP prote 99.7 4.3E-16 1.5E-20 177.2 17.4 239 646-886 21-363 (376)
88 1g8p_A Magnesium-chelatase 38 99.7 9.3E-16 3.2E-20 171.9 19.2 232 625-891 5-325 (350)
89 1l8q_A Chromosomal replication 99.7 7.8E-16 2.7E-20 171.3 18.1 218 641-887 6-239 (324)
90 3pxg_A Negative regulator of g 99.7 3.2E-16 1.1E-20 183.5 15.1 208 640-888 174-406 (468)
91 1njg_A DNA polymerase III subu 99.7 3E-15 1E-19 156.9 20.1 203 640-885 17-248 (250)
92 3cmw_A Protein RECA, recombina 99.7 7.8E-16 2.7E-20 199.7 18.7 150 291-441 1015-1218(1706)
93 1hqc_A RUVB; extended AAA-ATPa 99.7 3.1E-15 1.1E-19 165.9 21.0 190 293-510 9-214 (324)
94 3bos_A Putative DNA replicatio 99.7 2.4E-15 8.2E-20 158.6 18.6 205 642-886 24-241 (242)
95 1in4_A RUVB, holliday junction 99.6 2.7E-14 9.3E-19 159.8 27.7 217 640-890 19-252 (334)
96 1sxj_A Activator 1 95 kDa subu 99.6 9E-16 3.1E-20 181.9 15.4 226 639-888 32-274 (516)
97 2qby_B CDC6 homolog 3, cell di 99.6 5.8E-15 2E-19 167.4 20.2 213 646-889 20-271 (384)
98 1l8q_A Chromosomal replication 99.6 5.4E-15 1.9E-19 164.5 18.8 196 293-513 8-214 (324)
99 2r44_A Uncharacterized protein 99.6 3E-15 1E-19 167.1 16.2 212 643-891 24-300 (331)
100 1jbk_A CLPB protein; beta barr 99.6 2.8E-16 9.6E-21 159.0 7.1 160 641-825 17-194 (195)
101 1sxj_D Activator 1 41 kDa subu 99.6 7.8E-15 2.7E-19 164.4 19.3 212 639-889 30-264 (353)
102 4fcw_A Chaperone protein CLPB; 99.6 1.3E-15 4.5E-20 167.9 12.7 205 645-870 16-282 (311)
103 3pxg_A Negative regulator of g 99.6 1.7E-15 5.6E-20 177.4 13.7 185 293-514 177-385 (468)
104 1jbk_A CLPB protein; beta barr 99.6 1.3E-15 4.4E-20 154.1 11.1 158 293-472 19-194 (195)
105 1um8_A ATP-dependent CLP prote 99.6 1.5E-14 5.1E-19 164.5 20.9 220 297-519 22-344 (376)
106 2z4s_A Chromosomal replication 99.6 7E-15 2.4E-19 170.7 17.3 175 329-515 130-314 (440)
107 3te6_A Regulatory protein SIR3 99.6 3.4E-15 1.2E-19 165.0 13.8 176 677-869 42-289 (318)
108 4fcw_A Chaperone protein CLPB; 99.6 7.8E-15 2.7E-19 161.7 16.5 207 296-520 17-284 (311)
109 1fnn_A CDC6P, cell division co 99.6 7.1E-14 2.4E-18 158.5 24.5 223 642-891 13-277 (389)
110 2chq_A Replication factor C sm 99.6 8.6E-15 2.9E-19 161.4 15.7 209 639-888 10-226 (319)
111 2qby_A CDC6 homolog 1, cell di 99.6 2.2E-14 7.6E-19 162.0 19.3 224 642-889 16-273 (386)
112 3te6_A Regulatory protein SIR3 99.6 1.1E-14 3.9E-19 160.9 16.3 200 298-520 22-292 (318)
113 2chg_A Replication factor C sm 99.6 5.1E-14 1.7E-18 145.8 20.4 187 293-510 14-207 (226)
114 1sxj_B Activator 1 37 kDa subu 99.6 4.5E-14 1.6E-18 155.9 20.6 205 639-888 14-231 (323)
115 2v1u_A Cell division control p 99.6 5.6E-14 1.9E-18 158.9 21.8 203 296-515 19-257 (387)
116 1ojl_A Transcriptional regulat 99.6 1.4E-15 4.6E-20 168.2 8.0 257 646-936 2-304 (304)
117 1njg_A DNA polymerase III subu 99.6 8.9E-14 3E-18 145.6 21.2 185 293-511 20-232 (250)
118 1jr3_A DNA polymerase III subu 99.6 4.8E-14 1.6E-18 159.2 19.6 206 639-887 9-243 (373)
119 3u61_B DNA polymerase accessor 99.6 2.6E-14 8.9E-19 158.9 16.8 177 292-501 22-211 (324)
120 3pvs_A Replication-associated 99.6 5.6E-14 1.9E-18 163.1 19.8 184 292-513 22-221 (447)
121 1iqp_A RFCS; clamp loader, ext 99.6 6E-14 2.1E-18 155.2 19.0 205 639-888 18-234 (327)
122 1sxj_A Activator 1 95 kDa subu 99.6 2.7E-14 9.3E-19 169.2 17.0 193 292-498 35-244 (516)
123 1sxj_E Activator 1 40 kDa subu 99.5 9.2E-14 3.1E-18 156.1 19.8 192 639-866 7-244 (354)
124 3bos_A Putative DNA replicatio 99.5 9.8E-14 3.4E-18 146.1 17.3 190 293-516 25-226 (242)
125 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 2.3E-14 7.7E-19 168.1 13.5 224 646-904 22-301 (500)
126 2p65_A Hypothetical protein PF 99.5 7.6E-15 2.6E-19 148.2 7.3 152 642-817 18-187 (187)
127 2p65_A Hypothetical protein PF 99.5 2.2E-14 7.4E-19 144.8 10.4 151 293-464 19-187 (187)
128 2qby_B CDC6 homolog 3, cell di 99.5 2.4E-13 8.3E-18 154.0 19.5 195 296-514 20-252 (384)
129 2r44_A Uncharacterized protein 99.5 5.9E-13 2E-17 148.4 19.9 192 294-517 25-280 (331)
130 1sxj_D Activator 1 41 kDa subu 99.5 2.9E-13 9.9E-18 151.6 17.4 190 292-512 33-240 (353)
131 1in4_A RUVB, holliday junction 99.5 1.5E-12 5.2E-17 145.6 23.1 196 293-517 22-233 (334)
132 2chq_A Replication factor C sm 99.5 2.3E-13 7.7E-18 150.0 15.7 187 292-509 13-206 (319)
133 1sxj_C Activator 1 40 kDa subu 99.5 3.9E-13 1.3E-17 150.6 17.2 210 639-888 18-239 (340)
134 2qby_A CDC6 homolog 1, cell di 99.5 1.1E-12 3.8E-17 148.0 20.9 200 296-514 20-252 (386)
135 1jr3_A DNA polymerase III subu 99.5 7.8E-13 2.7E-17 149.2 19.1 186 292-511 12-225 (373)
136 1sxj_B Activator 1 37 kDa subu 99.5 5.9E-13 2E-17 146.9 17.7 176 292-501 17-204 (323)
137 1iqp_A RFCS; clamp loader, ext 99.5 9.9E-13 3.4E-17 145.4 19.3 187 292-509 21-214 (327)
138 1g8p_A Magnesium-chelatase 38 99.5 4E-13 1.4E-17 150.4 15.3 202 292-518 20-306 (350)
139 1fnn_A CDC6P, cell division co 99.5 4.3E-12 1.5E-16 143.7 23.9 200 296-516 17-256 (389)
140 3cmu_A Protein RECA, recombina 99.5 4.7E-14 1.6E-18 184.8 8.4 171 624-794 656-869 (2050)
141 2bjv_A PSP operon transcriptio 99.5 6.3E-13 2.2E-17 143.4 15.8 195 643-866 3-240 (265)
142 1sxj_E Activator 1 40 kDa subu 99.4 1.1E-12 3.7E-17 147.3 17.3 187 292-510 10-240 (354)
143 3f9v_A Minichromosome maintena 99.4 8.1E-14 2.8E-18 167.4 6.4 221 646-889 295-588 (595)
144 2bjv_A PSP operon transcriptio 99.4 1E-12 3.5E-17 141.7 13.4 194 294-514 4-240 (265)
145 3vkg_A Dynein heavy chain, cyt 99.4 9.1E-11 3.1E-15 159.6 33.7 354 328-748 1303-1713(3245)
146 4akg_A Glutathione S-transfera 99.4 1.8E-11 6E-16 165.9 26.8 129 328-473 644-790 (2695)
147 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 1.3E-12 4.4E-17 153.2 13.8 196 297-520 23-272 (500)
148 3cmu_A Protein RECA, recombina 99.4 1.9E-11 6.4E-16 160.5 24.9 116 676-791 1423-1561(2050)
149 3n70_A Transport activator; si 99.4 5E-13 1.7E-17 131.1 6.8 112 647-794 2-116 (145)
150 1a5t_A Delta prime, HOLB; zinc 99.4 8.7E-12 3E-16 139.5 17.6 159 678-862 22-208 (334)
151 3k1j_A LON protease, ATP-depen 99.3 1.5E-12 5.2E-17 157.1 10.7 215 639-888 34-375 (604)
152 1sxj_C Activator 1 40 kDa subu 99.3 1.9E-11 6.5E-16 136.9 18.2 172 292-497 21-203 (340)
153 1ojl_A Transcriptional regulat 99.3 6.3E-12 2.1E-16 138.8 12.6 189 297-513 3-234 (304)
154 3co5_A Putative two-component 99.3 5.6E-13 1.9E-17 130.5 3.4 112 647-794 5-116 (143)
155 2gno_A DNA polymerase III, gam 99.3 5.8E-11 2E-15 131.0 17.2 142 650-829 1-152 (305)
156 1w5s_A Origin recognition comp 99.2 9.2E-11 3.2E-15 133.9 18.3 226 644-889 20-294 (412)
157 3n70_A Transport activator; si 99.2 1.4E-11 4.9E-16 120.7 8.5 112 297-441 2-116 (145)
158 1a5t_A Delta prime, HOLB; zinc 99.2 1.8E-10 6.1E-15 128.8 18.0 149 328-500 23-199 (334)
159 3co5_A Putative two-component 99.2 1.5E-11 5.1E-16 120.3 6.5 112 297-441 5-116 (143)
160 3f9v_A Minichromosome maintena 99.2 6.1E-12 2.1E-16 151.1 2.9 205 296-519 295-572 (595)
161 2krk_A 26S protease regulatory 99.1 8.7E-11 3E-15 104.6 7.3 78 812-891 7-84 (86)
162 3kw6_A 26S protease regulatory 99.1 1.9E-10 6.5E-15 100.5 8.5 75 814-890 1-75 (78)
163 2gno_A DNA polymerase III, gam 99.1 7.8E-10 2.7E-14 122.0 15.3 142 300-476 1-152 (305)
164 3vlf_B 26S protease regulatory 99.1 2.5E-10 8.6E-15 102.2 9.1 73 817-891 2-74 (88)
165 1ny5_A Transcriptional regulat 99.1 2.1E-10 7.3E-15 130.8 10.8 204 646-885 137-384 (387)
166 1w5s_A Origin recognition comp 99.1 1.7E-09 5.8E-14 123.4 18.3 206 296-516 22-275 (412)
167 3j16_B RLI1P; ribosome recycli 99.0 1.6E-10 5.5E-15 138.5 7.1 57 728-796 474-530 (608)
168 3vkg_A Dynein heavy chain, cyt 99.0 3.9E-08 1.3E-12 134.3 30.1 128 328-473 603-750 (3245)
169 3k1j_A LON protease, ATP-depen 99.0 5.3E-10 1.8E-14 134.8 9.7 117 388-517 201-358 (604)
170 3ec2_A DNA replication protein 99.0 3.6E-10 1.2E-14 114.4 6.5 133 640-796 4-145 (180)
171 3aji_B S6C, proteasome (prosom 99.0 6.9E-10 2.4E-14 98.1 7.1 74 817-892 2-75 (83)
172 3ozx_A RNAse L inhibitor; ATP 98.9 1.1E-09 3.8E-14 129.7 9.7 57 728-796 392-448 (538)
173 3ec2_A DNA replication protein 98.9 7.8E-10 2.7E-14 111.9 6.2 108 323-442 32-144 (180)
174 3dzd_A Transcriptional regulat 98.8 4E-09 1.4E-13 119.4 9.2 190 647-866 130-361 (368)
175 3bk7_A ABC transporter ATP-bin 98.8 3.2E-08 1.1E-12 118.8 16.5 56 729-796 479-534 (607)
176 1yqt_A RNAse L inhibitor; ATP- 98.8 8.3E-08 2.9E-12 113.8 19.6 56 729-796 409-464 (538)
177 2kjq_A DNAA-related protein; s 98.8 6.4E-09 2.2E-13 102.4 7.9 101 328-456 35-141 (149)
178 1tf7_A KAIC; homohexamer, hexa 98.8 1.3E-08 4.4E-13 120.7 12.0 110 676-794 277-417 (525)
179 2kjq_A DNAA-related protein; s 98.7 2.8E-08 9.5E-13 97.8 10.4 104 679-812 35-144 (149)
180 2dzn_B 26S protease regulatory 98.7 3.7E-09 1.3E-13 93.2 3.0 69 819-889 1-69 (82)
181 3f8t_A Predicted ATPase involv 98.7 4.1E-08 1.4E-12 112.3 12.1 212 648-889 215-484 (506)
182 1ny5_A Transcriptional regulat 98.7 7.6E-08 2.6E-12 109.7 14.0 191 296-514 137-370 (387)
183 2vhj_A Ntpase P4, P4; non- hyd 98.7 1.7E-08 5.8E-13 110.8 7.2 121 677-801 120-242 (331)
184 2qen_A Walker-type ATPase; unk 98.7 7.4E-07 2.5E-11 98.7 20.7 188 296-507 12-246 (350)
185 3ux8_A Excinuclease ABC, A sub 98.7 7.3E-08 2.5E-12 117.6 12.9 56 727-795 549-607 (670)
186 2vhj_A Ntpase P4, P4; non- hyd 98.6 1.2E-08 4E-13 112.1 4.7 121 325-448 119-242 (331)
187 2iw3_A Elongation factor 3A; a 98.6 1.6E-07 5.6E-12 117.0 14.4 29 323-351 455-483 (986)
188 2fna_A Conserved hypothetical 98.6 3.1E-07 1.1E-11 102.0 15.0 186 642-860 9-251 (357)
189 1svm_A Large T antigen; AAA+ f 98.6 3.2E-08 1.1E-12 112.0 6.5 143 651-815 131-284 (377)
190 2krk_A 26S protease regulatory 98.6 4.9E-08 1.7E-12 86.8 5.9 58 460-518 8-65 (86)
191 2w58_A DNAI, primosome compone 98.6 5.8E-08 2E-12 99.8 7.4 70 680-751 54-127 (202)
192 3dzd_A Transcriptional regulat 98.6 3.8E-07 1.3E-11 103.1 14.4 189 297-512 130-359 (368)
193 2fna_A Conserved hypothetical 98.6 5.2E-07 1.8E-11 100.2 15.1 183 296-507 13-250 (357)
194 3kw6_A 26S protease regulatory 98.5 1.3E-07 4.5E-12 82.3 7.5 56 461-517 1-56 (78)
195 2qen_A Walker-type ATPase; unk 98.5 3.1E-06 1.1E-10 93.7 19.5 190 642-860 8-247 (350)
196 2r2a_A Uncharacterized protein 98.5 2.1E-07 7.3E-12 96.0 8.8 126 330-464 6-154 (199)
197 1svm_A Large T antigen; AAA+ f 98.5 1.4E-07 4.8E-12 106.6 7.3 121 323-462 163-284 (377)
198 2w58_A DNAI, primosome compone 98.5 1.5E-07 5.1E-12 96.7 6.8 70 329-400 54-127 (202)
199 3vlf_B 26S protease regulatory 98.4 3E-07 1E-11 82.1 7.1 53 464-517 2-54 (88)
200 2qgz_A Helicase loader, putati 98.4 9.9E-08 3.4E-12 105.3 3.2 71 679-751 151-226 (308)
201 2r2a_A Uncharacterized protein 98.4 2.2E-07 7.5E-12 95.9 5.4 127 681-819 6-156 (199)
202 1ye8_A Protein THEP1, hypothet 98.3 3E-06 1E-10 85.8 12.8 27 331-357 2-28 (178)
203 3aji_B S6C, proteasome (prosom 98.3 5.6E-07 1.9E-11 79.3 5.1 53 464-517 2-54 (83)
204 1tue_A Replication protein E1; 98.3 9E-07 3.1E-11 90.9 6.8 112 325-463 54-179 (212)
205 2qgz_A Helicase loader, putati 98.2 7.8E-07 2.7E-11 98.1 6.0 71 328-400 151-226 (308)
206 3f8t_A Predicted ATPase involv 98.2 3.6E-06 1.2E-10 96.4 11.3 200 297-523 214-472 (506)
207 1ye8_A Protein THEP1, hypothet 98.2 5.6E-06 1.9E-10 83.7 10.6 122 682-819 2-166 (178)
208 1tue_A Replication protein E1; 98.2 1.6E-06 5.5E-11 89.0 6.4 108 677-814 55-177 (212)
209 1jr3_D DNA polymerase III, del 98.2 1.7E-05 5.8E-10 88.4 15.3 180 679-891 17-212 (343)
210 4a74_A DNA repair and recombin 98.1 3.8E-06 1.3E-10 87.5 7.7 121 676-796 21-182 (231)
211 4g1u_C Hemin import ATP-bindin 98.1 2.9E-06 1E-10 91.5 6.8 56 729-796 149-210 (266)
212 1n0w_A DNA repair protein RAD5 98.1 8E-06 2.7E-10 85.8 9.8 118 325-442 20-175 (243)
213 3gfo_A Cobalt import ATP-bindi 98.1 5.9E-06 2E-10 89.5 8.8 32 323-354 28-59 (275)
214 3rlf_A Maltose/maltodextrin im 98.1 3.5E-06 1.2E-10 95.1 6.9 32 323-354 23-54 (381)
215 3gfo_A Cobalt import ATP-bindi 98.1 1.9E-06 6.6E-11 93.3 4.5 57 729-797 151-207 (275)
216 2ehv_A Hypothetical protein PH 98.1 9.2E-06 3.1E-10 85.7 9.5 114 676-797 26-185 (251)
217 2cvh_A DNA repair and recombin 98.0 1.4E-05 4.8E-10 82.5 10.5 118 676-797 16-159 (220)
218 3fvq_A Fe(3+) IONS import ATP- 98.0 5.5E-06 1.9E-10 92.8 7.7 32 323-354 24-55 (359)
219 4a74_A DNA repair and recombin 98.0 9.1E-06 3.1E-10 84.6 8.7 119 325-443 21-182 (231)
220 3tif_A Uncharacterized ABC tra 98.0 6.4E-06 2.2E-10 87.1 7.2 55 729-795 153-207 (235)
221 4g1u_C Hemin import ATP-bindin 98.0 9.4E-07 3.2E-11 95.4 0.6 31 323-353 31-61 (266)
222 3rlf_A Maltose/maltodextrin im 98.0 7.2E-06 2.5E-10 92.5 7.7 56 729-796 141-196 (381)
223 4gp7_A Metallophosphoesterase; 98.0 2.8E-06 9.6E-11 85.2 3.9 72 725-797 87-162 (171)
224 2w0m_A SSO2452; RECA, SSPF, un 98.0 9.8E-06 3.3E-10 84.2 8.0 109 676-794 19-168 (235)
225 3tui_C Methionine import ATP-b 98.0 8.2E-06 2.8E-10 91.5 7.8 56 729-796 171-226 (366)
226 3fvq_A Fe(3+) IONS import ATP- 98.0 5.7E-06 1.9E-10 92.7 6.4 56 729-796 146-201 (359)
227 2cvh_A DNA repair and recombin 98.0 2.2E-05 7.6E-10 81.0 10.6 40 325-364 16-55 (220)
228 1n0w_A DNA repair protein RAD5 98.0 1.2E-05 4E-10 84.5 8.4 120 676-797 20-177 (243)
229 3tui_C Methionine import ATP-b 98.0 8.6E-06 3E-10 91.3 7.6 112 323-444 48-227 (366)
230 1z47_A CYSA, putative ABC-tran 98.0 7.4E-06 2.5E-10 91.8 6.7 32 323-354 35-66 (355)
231 2w0m_A SSO2452; RECA, SSPF, un 97.9 1.9E-05 6.6E-10 82.0 9.5 109 325-441 19-168 (235)
232 2it1_A 362AA long hypothetical 97.9 8.3E-06 2.8E-10 91.6 6.9 32 323-354 23-54 (362)
233 1v43_A Sugar-binding transport 97.9 9.5E-06 3.3E-10 91.5 7.2 32 323-354 31-62 (372)
234 2yyz_A Sugar ABC transporter, 97.9 8.4E-06 2.9E-10 91.5 6.6 32 323-354 23-54 (359)
235 3tif_A Uncharacterized ABC tra 97.9 6.5E-06 2.2E-10 87.1 5.0 32 323-354 25-56 (235)
236 2pcj_A ABC transporter, lipopr 97.9 1.6E-05 5.4E-10 83.5 7.9 32 323-354 24-55 (224)
237 1g29_1 MALK, maltose transport 97.9 9.4E-06 3.2E-10 91.6 6.5 32 323-354 23-54 (372)
238 2ehv_A Hypothetical protein PH 97.9 2.9E-05 9.7E-10 81.8 9.8 114 325-444 26-185 (251)
239 2pcj_A ABC transporter, lipopr 97.9 1.3E-05 4.3E-10 84.2 6.8 54 729-795 148-201 (224)
240 4gp7_A Metallophosphoesterase; 97.9 1.4E-05 4.9E-10 80.0 7.0 120 324-444 4-162 (171)
241 2it1_A 362AA long hypothetical 97.9 1.8E-05 6.1E-10 88.9 8.2 56 729-796 141-196 (362)
242 2olj_A Amino acid ABC transpor 97.9 1.5E-05 5.2E-10 85.7 7.2 55 729-796 167-221 (263)
243 1jr3_D DNA polymerase III, del 97.9 9.5E-05 3.2E-09 82.3 13.9 143 328-497 17-176 (343)
244 2yyz_A Sugar ABC transporter, 97.9 1.8E-05 6.2E-10 88.8 8.0 56 729-796 141-196 (359)
245 1z47_A CYSA, putative ABC-tran 97.9 1.8E-05 6.2E-10 88.6 8.0 56 729-796 153-208 (355)
246 1u0j_A DNA replication protein 97.9 1.3E-05 4.3E-10 85.9 6.3 28 679-706 103-130 (267)
247 3d31_A Sulfate/molybdate ABC t 97.9 1.5E-05 5.2E-10 89.1 7.0 32 323-354 20-51 (348)
248 1v43_A Sugar-binding transport 97.9 1.6E-05 5.6E-10 89.5 7.4 56 729-796 149-204 (372)
249 1u0j_A DNA replication protein 97.8 2.9E-05 9.9E-10 83.2 8.8 29 327-355 102-130 (267)
250 1oxx_K GLCV, glucose, ABC tran 97.8 8.3E-06 2.9E-10 91.4 4.7 32 323-354 25-56 (353)
251 2olj_A Amino acid ABC transpor 97.8 1.8E-05 6.3E-10 85.0 7.1 32 323-354 44-75 (263)
252 1sgw_A Putative ABC transporte 97.8 4.9E-06 1.7E-10 86.7 2.5 56 729-797 141-196 (214)
253 1g6h_A High-affinity branched- 97.8 2.5E-05 8.7E-10 83.7 8.1 56 729-797 161-216 (257)
254 1vpl_A ABC transporter, ATP-bi 97.8 1.6E-05 5.3E-10 85.3 6.1 55 729-796 154-208 (256)
255 2dzn_B 26S protease regulatory 97.8 4.5E-06 1.5E-10 73.3 1.6 51 466-517 1-51 (82)
256 3hr8_A Protein RECA; alpha and 97.8 7.8E-05 2.7E-09 83.5 11.8 114 325-438 57-195 (356)
257 3d31_A Sulfate/molybdate ABC t 97.8 1.7E-05 5.8E-10 88.7 6.2 56 729-796 135-190 (348)
258 1oxx_K GLCV, glucose, ABC tran 97.8 1.1E-05 3.7E-10 90.5 4.6 56 729-796 148-203 (353)
259 1vpl_A ABC transporter, ATP-bi 97.8 2.5E-05 8.7E-10 83.6 7.2 32 323-354 35-66 (256)
260 3nh6_A ATP-binding cassette SU 97.8 5.6E-06 1.9E-10 91.0 1.9 32 323-354 74-105 (306)
261 2ixe_A Antigen peptide transpo 97.8 3.2E-05 1.1E-09 83.6 7.8 55 729-795 164-218 (271)
262 1g29_1 MALK, maltose transport 97.8 2.3E-05 7.9E-10 88.4 6.9 56 729-796 147-202 (372)
263 2onk_A Molybdate/tungstate ABC 97.8 1.1E-05 3.6E-10 85.7 3.8 56 729-796 134-189 (240)
264 2zr9_A Protein RECA, recombina 97.8 4.8E-05 1.6E-09 85.2 9.1 117 324-440 56-197 (349)
265 2ff7_A Alpha-hemolysin translo 97.8 2.1E-05 7.2E-10 83.8 5.8 54 729-796 153-206 (247)
266 2ixe_A Antigen peptide transpo 97.7 9.6E-06 3.3E-10 87.7 3.1 32 323-354 39-70 (271)
267 1pzn_A RAD51, DNA repair and r 97.7 5.4E-05 1.8E-09 84.8 9.3 120 676-797 127-289 (349)
268 2onk_A Molybdate/tungstate ABC 97.7 1.8E-05 6.1E-10 84.0 4.9 31 323-354 19-49 (240)
269 3lda_A DNA repair protein RAD5 97.7 6.1E-05 2.1E-09 85.8 9.4 116 325-440 174-327 (400)
270 3hr8_A Protein RECA; alpha and 97.7 8.7E-05 3E-09 83.1 10.4 118 676-793 57-197 (356)
271 2qi9_C Vitamin B12 import ATP- 97.7 2.3E-05 8E-10 83.5 5.4 55 729-796 134-195 (249)
272 1pzn_A RAD51, DNA repair and r 97.7 7.8E-05 2.7E-09 83.5 9.7 119 324-442 126-287 (349)
273 2ff7_A Alpha-hemolysin translo 97.7 1.3E-05 4.4E-10 85.4 3.2 32 323-354 29-60 (247)
274 2ihy_A ABC transporter, ATP-bi 97.7 1.9E-05 6.6E-10 85.7 4.6 56 729-797 169-226 (279)
275 2zr9_A Protein RECA, recombina 97.7 4.6E-05 1.6E-09 85.4 7.7 120 676-795 57-199 (349)
276 2nq2_C Hypothetical ABC transp 97.7 4.8E-05 1.7E-09 81.3 7.5 32 323-354 25-56 (253)
277 2eyu_A Twitching motility prot 97.7 5.3E-05 1.8E-09 81.4 7.7 77 673-749 18-108 (261)
278 1g6h_A High-affinity branched- 97.7 8.2E-05 2.8E-09 79.7 9.2 32 323-354 27-58 (257)
279 3jvv_A Twitching mobility prot 97.7 7.1E-05 2.4E-09 84.0 9.0 98 680-797 123-234 (356)
280 1b0u_A Histidine permease; ABC 97.7 3.6E-05 1.2E-09 82.7 6.4 32 323-354 26-57 (262)
281 2yz2_A Putative ABC transporte 97.7 8.4E-05 2.9E-09 80.0 9.2 56 729-797 146-201 (266)
282 1ji0_A ABC transporter; ATP bi 97.7 2.8E-05 9.5E-10 82.5 5.3 55 729-796 147-201 (240)
283 3nh6_A ATP-binding cassette SU 97.7 3E-05 1E-09 85.1 5.6 28 677-704 77-104 (306)
284 2z43_A DNA repair and recombin 97.7 7.7E-05 2.6E-09 82.6 8.9 115 325-439 103-256 (324)
285 1xp8_A RECA protein, recombina 97.7 0.00017 6E-09 81.1 11.9 114 325-439 70-209 (366)
286 1mv5_A LMRA, multidrug resista 97.7 2.6E-05 9E-10 82.8 4.8 54 729-796 147-200 (243)
287 1v5w_A DMC1, meiotic recombina 97.7 0.0001 3.5E-09 82.4 9.8 116 325-440 118-273 (343)
288 3lda_A DNA repair protein RAD5 97.6 5.5E-05 1.9E-09 86.1 7.5 120 676-795 174-329 (400)
289 1b0u_A Histidine permease; ABC 97.6 6.2E-05 2.1E-09 80.9 7.5 55 729-796 161-215 (262)
290 1ji0_A ABC transporter; ATP bi 97.6 4.9E-05 1.7E-09 80.6 6.5 31 323-353 26-56 (240)
291 2nq2_C Hypothetical ABC transp 97.6 0.0001 3.6E-09 78.7 9.1 56 729-796 136-191 (253)
292 2ghi_A Transport protein; mult 97.6 3.8E-05 1.3E-09 82.5 5.6 54 729-796 163-216 (260)
293 2qi9_C Vitamin B12 import ATP- 97.6 1.1E-05 3.8E-10 86.1 1.1 32 323-354 20-51 (249)
294 2d2e_A SUFC protein; ABC-ATPas 97.6 6.3E-05 2.2E-09 80.2 7.1 55 729-796 151-205 (250)
295 2ihy_A ABC transporter, ATP-bi 97.6 5.4E-05 1.9E-09 82.1 6.2 32 323-354 41-72 (279)
296 1sgw_A Putative ABC transporte 97.6 4.7E-05 1.6E-09 79.3 5.1 32 323-354 29-60 (214)
297 3gd7_A Fusion complex of cysti 97.6 1.5E-05 5.2E-10 90.4 1.4 31 323-353 41-71 (390)
298 1xp8_A RECA protein, recombina 97.6 0.00016 5.4E-09 81.4 9.5 118 676-793 70-210 (366)
299 2yz2_A Putative ABC transporte 97.5 0.00018 6E-09 77.5 9.3 32 323-354 27-58 (266)
300 2cbz_A Multidrug resistance-as 97.5 0.00015 5.1E-09 76.7 8.5 56 728-797 134-192 (237)
301 2zu0_C Probable ATP-dependent 97.5 9.1E-05 3.1E-09 79.8 7.0 55 729-796 172-226 (267)
302 3gd7_A Fusion complex of cysti 97.5 5.9E-05 2E-09 85.6 5.7 56 727-796 161-216 (390)
303 1u94_A RECA protein, recombina 97.5 0.00016 5.6E-09 81.0 9.2 115 325-439 59-198 (356)
304 2zu0_C Probable ATP-dependent 97.5 0.00021 7.2E-09 76.9 9.8 30 323-352 40-69 (267)
305 2z43_A DNA repair and recombin 97.5 0.00011 3.9E-09 81.2 7.9 117 676-794 103-258 (324)
306 2pjz_A Hypothetical protein ST 97.5 0.00025 8.6E-09 76.1 10.0 30 323-353 25-54 (263)
307 2ghi_A Transport protein; mult 97.5 3.2E-05 1.1E-09 83.0 2.6 32 323-354 40-71 (260)
308 1v5w_A DMC1, meiotic recombina 97.5 0.00021 7.2E-09 79.8 9.2 118 676-795 118-275 (343)
309 1u94_A RECA protein, recombina 97.5 0.00017 5.9E-09 80.9 8.5 119 676-794 59-200 (356)
310 3jvv_A Twitching mobility prot 97.5 0.00017 5.7E-09 81.0 7.9 100 327-444 121-234 (356)
311 2pt7_A CAG-ALFA; ATPase, prote 97.5 0.00011 3.8E-09 81.6 6.3 97 679-795 170-276 (330)
312 2cbz_A Multidrug resistance-as 97.4 0.00026 9E-09 74.8 8.7 31 323-353 25-55 (237)
313 1cr0_A DNA primase/helicase; R 97.4 0.00038 1.3E-08 75.7 10.1 38 324-361 30-71 (296)
314 3io5_A Recombination and repai 97.4 0.00034 1.2E-08 76.5 9.6 115 324-439 24-170 (333)
315 1nlf_A Regulatory protein REPA 97.4 0.00019 6.4E-09 77.5 7.5 112 676-796 26-183 (279)
316 3qf4_B Uncharacterized ABC tra 97.4 0.00015 5.3E-09 87.0 7.4 55 728-796 498-552 (598)
317 2pjz_A Hypothetical protein ST 97.4 0.00036 1.2E-08 74.9 9.3 52 729-796 136-187 (263)
318 2jv2_A Putative uncharacterize 97.4 0.0004 1.4E-08 60.7 7.6 51 190-262 30-80 (83)
319 1nlf_A Regulatory protein REPA 97.4 0.00034 1.2E-08 75.5 9.0 29 325-353 26-54 (279)
320 2dr3_A UPF0273 protein PH0284; 97.4 0.00073 2.5E-08 70.7 11.0 39 324-362 18-59 (247)
321 3b5x_A Lipid A export ATP-bind 97.4 0.0001 3.4E-09 88.4 4.8 31 323-353 363-393 (582)
322 1z6t_A APAF-1, apoptotic prote 97.4 0.0012 4E-08 78.9 14.1 170 644-851 122-321 (591)
323 2pze_A Cystic fibrosis transme 97.4 0.00043 1.5E-08 72.7 9.1 55 728-796 137-192 (229)
324 3qf4_B Uncharacterized ABC tra 97.4 6.9E-05 2.3E-09 90.1 3.3 33 323-355 375-407 (598)
325 3qf4_A ABC transporter, ATP-bi 97.3 6.3E-05 2.2E-09 90.2 3.0 33 323-355 363-395 (587)
326 1mv5_A LMRA, multidrug resista 97.3 2.5E-05 8.4E-10 83.1 -0.6 31 323-353 22-52 (243)
327 3b5x_A Lipid A export ATP-bind 97.3 0.00011 3.7E-09 88.0 4.9 54 729-796 488-541 (582)
328 4a82_A Cystic fibrosis transme 97.3 9.6E-05 3.3E-09 88.5 4.3 55 729-797 485-539 (578)
329 2i3b_A HCR-ntpase, human cance 97.3 0.00047 1.6E-08 70.3 8.6 24 330-353 2-25 (189)
330 3io5_A Recombination and repai 97.3 0.00055 1.9E-08 74.9 9.6 117 676-793 25-171 (333)
331 3thx_B DNA mismatch repair pro 97.3 0.00023 7.8E-09 88.9 7.2 110 679-799 672-801 (918)
332 4a82_A Cystic fibrosis transme 97.3 7.2E-05 2.5E-09 89.5 2.6 33 323-355 361-393 (578)
333 1cr0_A DNA primase/helicase; R 97.3 0.00051 1.7E-08 74.7 9.1 113 676-794 31-197 (296)
334 1yqt_A RNAse L inhibitor; ATP- 97.3 0.00033 1.1E-08 82.9 8.0 56 728-796 165-220 (538)
335 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00043 1.5E-08 73.7 8.2 30 323-352 23-52 (250)
336 3b60_A Lipid A export ATP-bind 97.3 0.0001 3.4E-09 88.4 3.5 32 323-354 363-394 (582)
337 3qf4_A ABC transporter, ATP-bi 97.3 0.00028 9.5E-09 84.6 7.2 55 728-796 486-540 (587)
338 3b60_A Lipid A export ATP-bind 97.2 0.00017 6E-09 86.3 5.3 54 729-796 488-541 (582)
339 2ewv_A Twitching motility prot 97.2 0.00058 2E-08 77.1 9.2 74 676-749 132-219 (372)
340 2i1q_A DNA repair and recombin 97.2 0.0004 1.4E-08 76.6 7.8 115 325-439 94-257 (322)
341 3vaa_A Shikimate kinase, SK; s 97.2 0.00014 4.8E-09 74.3 3.8 37 324-360 20-56 (199)
342 1qhx_A CPT, protein (chloramph 97.2 0.00049 1.7E-08 68.5 7.6 34 329-362 3-36 (178)
343 3sfz_A APAF-1, apoptotic pepti 97.2 0.0033 1.1E-07 81.3 17.4 169 644-851 122-321 (1249)
344 2pt7_A CAG-ALFA; ATPase, prote 97.2 0.00016 5.4E-09 80.4 4.3 74 325-398 167-250 (330)
345 2i3b_A HCR-ntpase, human cance 97.2 0.00051 1.7E-08 70.0 7.4 23 682-704 3-25 (189)
346 2eyu_A Twitching motility prot 97.2 0.00021 7.1E-09 76.7 4.6 72 326-397 22-107 (261)
347 3dm5_A SRP54, signal recogniti 97.2 0.0015 5E-08 75.1 11.7 72 680-751 100-194 (443)
348 1z6t_A APAF-1, apoptotic prote 97.2 0.0042 1.4E-07 74.1 16.3 165 296-499 124-321 (591)
349 3j16_B RLI1P; ribosome recycli 97.2 0.00058 2E-08 81.8 8.7 56 729-797 229-284 (608)
350 2a5y_B CED-4; apoptosis; HET: 97.2 0.0037 1.3E-07 74.2 15.6 144 299-476 131-306 (549)
351 3sfz_A APAF-1, apoptotic pepti 97.2 0.0048 1.7E-07 79.7 17.8 167 296-499 124-321 (1249)
352 4f4c_A Multidrug resistance pr 97.2 0.00043 1.5E-08 90.4 7.9 113 672-798 434-617 (1321)
353 3ozx_A RNAse L inhibitor; ATP 97.1 0.00029 9.8E-09 83.4 5.3 30 324-353 289-318 (538)
354 2bbs_A Cystic fibrosis transme 97.1 0.00099 3.4E-08 72.5 9.0 54 729-796 167-221 (290)
355 2pze_A Cystic fibrosis transme 97.1 0.00048 1.6E-08 72.4 6.2 32 323-354 28-59 (229)
356 2i1q_A DNA repair and recombin 97.1 0.00061 2.1E-08 75.2 7.2 115 676-792 94-257 (322)
357 2orw_A Thymidine kinase; TMTK, 97.1 0.00043 1.5E-08 70.2 5.5 32 329-360 3-37 (184)
358 2dr3_A UPF0273 protein PH0284; 97.0 0.0016 5.5E-08 68.0 9.7 38 676-713 19-59 (247)
359 1zp6_A Hypothetical protein AT 97.0 0.00029 1E-08 71.0 3.7 41 325-365 5-45 (191)
360 2ewv_A Twitching motility prot 97.0 0.0011 3.7E-08 74.8 8.6 77 321-397 128-218 (372)
361 2b8t_A Thymidine kinase; deoxy 97.0 0.0018 6.3E-08 67.6 9.6 72 328-400 11-101 (223)
362 3b85_A Phosphate starvation-in 97.0 0.00032 1.1E-08 72.6 3.8 96 683-798 25-162 (208)
363 3thx_B DNA mismatch repair pro 97.0 0.0016 5.4E-08 81.4 10.4 27 325-351 669-695 (918)
364 3thx_A DNA mismatch repair pro 97.0 0.0011 3.6E-08 83.1 8.8 106 681-797 663-788 (934)
365 3vaa_A Shikimate kinase, SK; s 97.0 0.00041 1.4E-08 70.8 4.1 35 677-711 22-56 (199)
366 2r6a_A DNAB helicase, replicat 97.0 0.0016 5.3E-08 75.5 9.4 39 324-362 198-240 (454)
367 3trf_A Shikimate kinase, SK; a 97.0 0.00039 1.3E-08 69.8 3.7 32 329-360 5-36 (185)
368 2p5t_B PEZT; postsegregational 97.0 0.0015 5.3E-08 69.3 8.6 41 325-365 28-68 (253)
369 2yl4_A ATP-binding cassette SU 96.9 0.00061 2.1E-08 81.7 5.9 54 729-796 491-544 (595)
370 1s96_A Guanylate kinase, GMP k 96.9 0.0012 4.2E-08 68.8 7.4 30 325-354 12-41 (219)
371 1tf7_A KAIC; homohexamer, hexa 96.9 0.0018 6.2E-08 76.4 9.5 113 677-797 36-188 (525)
372 3qwz_A Transitional endoplasmi 96.9 0.00089 3.1E-08 69.1 5.9 55 188-263 133-189 (211)
373 2rhm_A Putative kinase; P-loop 96.9 0.00064 2.2E-08 68.5 4.7 34 326-359 2-35 (193)
374 2yl4_A ATP-binding cassette SU 96.9 0.00069 2.4E-08 81.3 5.8 32 323-354 364-395 (595)
375 2ius_A DNA translocase FTSK; n 96.9 0.0036 1.2E-07 73.2 11.6 75 740-826 297-374 (512)
376 2ius_A DNA translocase FTSK; n 96.9 0.0053 1.8E-07 71.8 12.9 75 389-473 297-374 (512)
377 1gvn_B Zeta; postsegregational 96.9 0.0021 7.1E-08 69.8 8.9 40 326-365 30-69 (287)
378 4f4c_A Multidrug resistance pr 96.9 0.00089 3E-08 87.5 6.8 33 323-355 438-470 (1321)
379 4aby_A DNA repair protein RECN 96.8 0.0014 4.8E-08 74.7 7.6 55 727-795 301-357 (415)
380 3trf_A Shikimate kinase, SK; a 96.8 0.0006 2E-08 68.4 4.0 32 680-711 5-36 (185)
381 2b8t_A Thymidine kinase; deoxy 96.8 0.0014 4.8E-08 68.5 6.9 68 683-751 15-101 (223)
382 2orw_A Thymidine kinase; TMTK, 96.8 0.00019 6.4E-09 72.9 0.1 30 682-711 5-37 (184)
383 1kag_A SKI, shikimate kinase I 96.8 0.00081 2.8E-08 66.5 4.7 30 329-358 4-33 (173)
384 1qhx_A CPT, protein (chloramph 96.8 0.00073 2.5E-08 67.2 4.4 33 681-713 4-36 (178)
385 1y63_A LMAJ004144AAA protein; 96.8 0.0006 2.1E-08 68.7 3.7 35 325-359 6-41 (184)
386 3bk7_A ABC transporter ATP-bin 96.8 0.00095 3.2E-08 80.0 5.7 30 324-353 377-406 (607)
387 1zp6_A Hypothetical protein AT 96.8 0.00048 1.7E-08 69.4 2.7 40 677-716 6-45 (191)
388 3iij_A Coilin-interacting nucl 96.8 0.00076 2.6E-08 67.4 4.1 35 326-360 8-42 (180)
389 1vma_A Cell division protein F 96.8 0.0028 9.7E-08 69.4 9.0 74 325-398 100-196 (306)
390 1wb9_A DNA mismatch repair pro 96.7 0.0029 9.8E-08 78.1 9.8 106 681-797 608-733 (800)
391 3ux8_A Excinuclease ABC, A sub 96.7 0.0019 6.6E-08 78.5 8.1 57 727-796 208-266 (670)
392 2zts_A Putative uncharacterize 96.7 0.007 2.4E-07 63.2 11.2 110 325-440 26-181 (251)
393 2r6a_A DNAB helicase, replicat 96.7 0.0028 9.4E-08 73.4 8.6 113 676-792 199-362 (454)
394 3kb2_A SPBC2 prophage-derived 96.7 0.00099 3.4E-08 65.6 4.2 31 331-361 3-33 (173)
395 2a5y_B CED-4; apoptosis; HET: 96.7 0.011 3.9E-07 69.9 13.9 166 649-851 131-330 (549)
396 2iut_A DNA translocase FTSK; n 96.7 0.0099 3.4E-07 70.1 13.1 74 741-826 345-420 (574)
397 3thx_A DNA mismatch repair pro 96.7 0.0035 1.2E-07 78.4 9.7 24 327-350 660-683 (934)
398 3g5u_A MCG1178, multidrug resi 96.6 0.0015 5.1E-08 85.2 6.6 56 728-797 533-588 (1284)
399 3crm_A TRNA delta(2)-isopenten 96.6 0.0023 8E-08 70.4 7.0 35 330-364 6-40 (323)
400 1kag_A SKI, shikimate kinase I 96.6 0.0012 4E-08 65.4 4.2 30 681-710 5-34 (173)
401 3a4m_A L-seryl-tRNA(SEC) kinas 96.6 0.0033 1.1E-07 67.1 8.0 37 329-365 4-43 (260)
402 2rhm_A Putative kinase; P-loop 96.6 0.001 3.5E-08 66.9 3.8 33 678-710 3-35 (193)
403 3g5u_A MCG1178, multidrug resi 96.6 0.00045 1.5E-08 90.0 1.4 33 323-355 410-442 (1284)
404 1via_A Shikimate kinase; struc 96.6 0.0013 4.4E-08 65.5 4.3 29 331-359 6-34 (175)
405 2iw3_A Elongation factor 3A; a 96.6 0.0015 5.2E-08 81.6 5.8 53 729-797 556-608 (986)
406 3bh0_A DNAB-like replicative h 96.6 0.0092 3.1E-07 65.6 11.5 39 324-362 63-104 (315)
407 4eun_A Thermoresistant glucoki 96.6 0.0015 5.2E-08 66.6 4.8 37 327-365 27-63 (200)
408 3kb2_A SPBC2 prophage-derived 96.6 0.0012 4.1E-08 64.9 3.8 30 682-711 3-32 (173)
409 1via_A Shikimate kinase; struc 96.5 0.0012 4.1E-08 65.7 3.7 29 682-710 6-34 (175)
410 2q6t_A DNAB replication FORK h 96.5 0.0067 2.3E-07 70.0 10.5 39 324-362 195-237 (444)
411 1zuh_A Shikimate kinase; alpha 96.5 0.0016 5.5E-08 64.2 4.6 32 329-360 7-38 (168)
412 2iut_A DNA translocase FTSK; n 96.5 0.014 4.7E-07 68.9 13.1 74 390-473 345-420 (574)
413 2iyv_A Shikimate kinase, SK; t 96.5 0.0012 4E-08 66.2 3.5 31 330-360 3-33 (184)
414 3iij_A Coilin-interacting nucl 96.5 0.0017 5.7E-08 64.9 4.6 34 678-711 9-42 (180)
415 3upu_A ATP-dependent DNA helic 96.5 0.011 3.6E-07 68.6 12.0 51 640-704 18-69 (459)
416 1knq_A Gluconate kinase; ALFA/ 96.5 0.0017 5.7E-08 64.5 4.5 36 328-365 7-42 (175)
417 3cm0_A Adenylate kinase; ATP-b 96.5 0.0013 4.5E-08 65.8 3.7 30 329-358 4-33 (186)
418 3e1s_A Exodeoxyribonuclease V, 96.5 0.0027 9.3E-08 75.7 7.0 32 329-360 204-238 (574)
419 2p5t_B PEZT; postsegregational 96.5 0.0026 8.8E-08 67.6 6.0 39 678-716 30-68 (253)
420 1vma_A Cell division protein F 96.5 0.0088 3E-07 65.5 10.4 72 679-750 103-197 (306)
421 1gvn_B Zeta; postsegregational 96.5 0.0035 1.2E-07 68.0 7.1 36 680-715 33-68 (287)
422 3uie_A Adenylyl-sulfate kinase 96.5 0.0018 6.2E-08 66.1 4.5 40 326-365 22-64 (200)
423 2o8b_B DNA mismatch repair pro 96.5 0.0068 2.3E-07 76.8 10.6 106 681-797 790-915 (1022)
424 1y63_A LMAJ004144AAA protein; 96.5 0.0015 5.2E-08 65.7 3.9 31 680-710 10-41 (184)
425 2c95_A Adenylate kinase 1; tra 96.4 0.002 6.8E-08 64.9 4.6 33 328-360 8-40 (196)
426 2cdn_A Adenylate kinase; phosp 96.4 0.0022 7.4E-08 65.3 4.9 33 328-360 19-51 (201)
427 1aky_A Adenylate kinase; ATP:A 96.4 0.0021 7.1E-08 66.5 4.8 33 328-360 3-35 (220)
428 3dm5_A SRP54, signal recogniti 96.4 0.016 5.4E-07 66.5 12.3 71 328-398 99-192 (443)
429 2pez_A Bifunctional 3'-phospho 96.4 0.002 6.7E-08 64.4 4.3 38 327-364 3-43 (179)
430 4aby_A DNA repair protein RECN 96.4 0.0081 2.8E-07 68.3 10.0 30 324-354 56-85 (415)
431 1tev_A UMP-CMP kinase; ploop, 96.4 0.0021 7.1E-08 64.5 4.4 31 329-359 3-33 (196)
432 2iyv_A Shikimate kinase, SK; t 96.4 0.002 6.8E-08 64.5 4.1 30 682-711 4-33 (184)
433 1wb9_A DNA mismatch repair pro 96.4 0.012 4.1E-07 72.6 11.8 26 327-352 605-630 (800)
434 3t61_A Gluconokinase; PSI-biol 96.4 0.0024 8.1E-08 65.1 4.7 31 329-359 18-48 (202)
435 1zuh_A Shikimate kinase; alpha 96.4 0.0019 6.6E-08 63.7 3.9 31 681-711 8-38 (168)
436 1kht_A Adenylate kinase; phosp 96.4 0.0019 6.6E-08 64.6 3.9 26 329-354 3-28 (192)
437 1e6c_A Shikimate kinase; phosp 96.3 0.0023 7.9E-08 63.1 4.4 30 330-359 3-32 (173)
438 2vli_A Antibiotic resistance p 96.3 0.0018 6E-08 64.6 3.5 30 329-358 5-34 (183)
439 3nwj_A ATSK2; P loop, shikimat 96.3 0.0017 5.7E-08 69.2 3.5 37 324-360 40-79 (250)
440 2ze6_A Isopentenyl transferase 96.3 0.002 6.9E-08 68.6 4.0 32 331-362 3-34 (253)
441 2ze6_A Isopentenyl transferase 96.3 0.0018 6E-08 69.0 3.5 32 682-713 3-34 (253)
442 1zd8_A GTP:AMP phosphotransfer 96.3 0.0023 8E-08 66.5 4.4 34 327-360 5-38 (227)
443 2zts_A Putative uncharacterize 96.3 0.01 3.4E-07 62.0 9.3 110 676-793 26-181 (251)
444 4eun_A Thermoresistant glucoki 96.3 0.0022 7.6E-08 65.4 4.1 36 679-716 28-63 (200)
445 3lw7_A Adenylate kinase relate 96.3 0.0024 8.3E-08 62.6 4.1 29 331-360 3-31 (179)
446 2bwj_A Adenylate kinase 5; pho 96.3 0.0027 9.2E-08 64.1 4.4 31 329-359 12-42 (199)
447 1aky_A Adenylate kinase; ATP:A 96.2 0.0025 8.5E-08 65.9 4.1 32 680-711 4-35 (220)
448 2r8r_A Sensor protein; KDPD, P 96.2 0.016 5.5E-07 60.4 10.2 33 330-362 7-42 (228)
449 1ly1_A Polynucleotide kinase; 96.2 0.002 6.9E-08 63.8 3.2 26 330-355 3-29 (181)
450 1htw_A HI0065; nucleotide-bind 96.2 0.0025 8.5E-08 62.9 3.8 31 323-353 27-57 (158)
451 2cdn_A Adenylate kinase; phosp 96.2 0.0027 9.3E-08 64.6 4.3 31 681-711 21-51 (201)
452 1qf9_A UMP/CMP kinase, protein 96.2 0.0032 1.1E-07 63.0 4.7 32 329-360 6-37 (194)
453 1g5t_A COB(I)alamin adenosyltr 96.2 0.02 7E-07 58.3 10.6 103 329-441 28-163 (196)
454 1ex7_A Guanylate kinase; subst 96.2 0.0057 2E-07 62.0 6.5 28 330-357 2-29 (186)
455 1ak2_A Adenylate kinase isoenz 96.2 0.0033 1.1E-07 65.7 4.9 32 329-360 16-47 (233)
456 2px0_A Flagellar biosynthesis 96.2 0.0099 3.4E-07 64.8 8.8 36 327-362 103-142 (296)
457 3kl4_A SRP54, signal recogniti 96.2 0.021 7.1E-07 65.4 11.8 71 328-398 96-189 (433)
458 3kl4_A SRP54, signal recogniti 96.2 0.0096 3.3E-07 68.2 9.0 72 680-751 97-191 (433)
459 3t61_A Gluconokinase; PSI-biol 96.2 0.003 1E-07 64.3 4.4 31 680-710 18-48 (202)
460 3tr0_A Guanylate kinase, GMP k 96.2 0.0027 9.2E-08 64.5 4.0 30 325-354 3-32 (205)
461 1e6c_A Shikimate kinase; phosp 96.2 0.0027 9.4E-08 62.6 3.8 30 681-710 3-32 (173)
462 3cm0_A Adenylate kinase; ATP-b 96.2 0.0025 8.5E-08 63.8 3.5 30 681-710 5-34 (186)
463 3umf_A Adenylate kinase; rossm 96.2 0.0035 1.2E-07 65.2 4.6 41 325-367 25-65 (217)
464 3be4_A Adenylate kinase; malar 96.2 0.0031 1.1E-07 65.2 4.3 32 329-360 5-36 (217)
465 3umf_A Adenylate kinase; rossm 96.1 0.0025 8.4E-08 66.3 3.4 34 677-710 26-59 (217)
466 2c95_A Adenylate kinase 1; tra 96.1 0.0028 9.5E-08 63.8 3.8 33 679-711 8-40 (196)
467 3dl0_A Adenylate kinase; phosp 96.1 0.0033 1.1E-07 64.6 4.4 30 331-360 2-31 (216)
468 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.005 1.7E-07 65.6 6.0 65 681-747 5-79 (260)
469 2fz4_A DNA repair protein RAD2 96.1 0.01 3.5E-07 62.3 8.3 34 330-363 109-142 (237)
470 3lw7_A Adenylate kinase relate 96.1 0.0027 9.2E-08 62.2 3.6 29 682-711 3-31 (179)
471 1ewq_A DNA mismatch repair pro 96.1 0.012 4.3E-07 72.1 10.1 24 680-703 576-599 (765)
472 3upu_A ATP-dependent DNA helic 96.1 0.0063 2.2E-07 70.5 7.2 23 331-353 47-69 (459)
473 1tev_A UMP-CMP kinase; ploop, 96.1 0.0027 9.3E-08 63.7 3.6 30 681-710 4-33 (196)
474 2pt5_A Shikimate kinase, SK; a 96.1 0.0036 1.2E-07 61.4 4.4 29 331-359 2-30 (168)
475 2v54_A DTMP kinase, thymidylat 96.1 0.0037 1.3E-07 63.4 4.6 34 328-361 3-37 (204)
476 1knq_A Gluconate kinase; ALFA/ 96.1 0.0029 9.9E-08 62.7 3.7 30 681-710 9-38 (175)
477 1ukz_A Uridylate kinase; trans 96.1 0.0038 1.3E-07 63.5 4.6 32 329-360 15-46 (203)
478 2o8b_B DNA mismatch repair pro 96.1 0.014 4.7E-07 74.0 10.6 22 329-350 789-810 (1022)
479 2bbw_A Adenylate kinase 4, AK4 96.1 0.0033 1.1E-07 66.3 4.3 31 328-358 26-56 (246)
480 1cke_A CK, MSSA, protein (cyti 96.1 0.004 1.4E-07 64.3 4.9 30 329-358 5-34 (227)
481 2vli_A Antibiotic resistance p 96.1 0.0025 8.4E-08 63.5 3.1 29 681-709 6-34 (183)
482 3fb4_A Adenylate kinase; psych 96.1 0.0035 1.2E-07 64.5 4.3 30 331-360 2-31 (216)
483 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0023 7.9E-08 71.2 3.1 29 682-710 26-54 (359)
484 3tlx_A Adenylate kinase 2; str 96.1 0.0038 1.3E-07 65.9 4.7 34 327-360 27-60 (243)
485 1z6g_A Guanylate kinase; struc 96.1 0.0029 1E-07 65.6 3.7 31 323-353 17-47 (218)
486 2px0_A Flagellar biosynthesis 96.1 0.018 6.2E-07 62.7 10.1 68 679-748 104-191 (296)
487 1zak_A Adenylate kinase; ATP:A 96.1 0.0029 1E-07 65.5 3.7 31 328-358 4-34 (222)
488 1ak2_A Adenylate kinase isoenz 96.0 0.0036 1.2E-07 65.5 4.2 32 680-711 16-47 (233)
489 3sr0_A Adenylate kinase; phosp 96.0 0.0033 1.1E-07 64.9 3.7 28 683-710 3-30 (206)
490 1qf9_A UMP/CMP kinase, protein 96.0 0.0034 1.2E-07 62.8 3.8 32 680-711 6-37 (194)
491 1zd8_A GTP:AMP phosphotransfer 96.0 0.0029 1E-07 65.8 3.4 33 679-711 6-38 (227)
492 2j41_A Guanylate kinase; GMP, 96.0 0.003 1E-07 64.1 3.4 28 326-353 3-30 (207)
493 1g5t_A COB(I)alamin adenosyltr 96.0 0.017 5.7E-07 58.9 8.8 108 681-803 29-169 (196)
494 2ga8_A Hypothetical 39.9 kDa p 96.0 0.003 1E-07 70.3 3.5 29 331-359 26-54 (359)
495 2r8r_A Sensor protein; KDPD, P 96.0 0.0085 2.9E-07 62.4 6.6 33 681-713 7-42 (228)
496 2oap_1 GSPE-2, type II secreti 96.0 0.0027 9.1E-08 74.6 3.2 72 326-397 257-342 (511)
497 3crm_A TRNA delta(2)-isopenten 96.0 0.011 3.6E-07 65.2 7.6 33 681-713 6-38 (323)
498 1kht_A Adenylate kinase; phosp 96.0 0.003 1E-07 63.2 3.0 25 681-705 4-28 (192)
499 2xau_A PRE-mRNA-splicing facto 96.0 0.015 5.2E-07 71.7 9.9 62 641-703 70-132 (773)
500 2pt5_A Shikimate kinase, SK; a 96.0 0.004 1.4E-07 61.1 3.8 29 682-710 2-30 (168)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.9e-96 Score=891.82 Aligned_cols=606 Identities=41% Similarity=0.706 Sum_probs=495.4
Q ss_pred HHHHHHHhhc--cCCcccCCCEEEEeecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEcCCc
Q 002169 188 LLQTCAASWL--YSRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPL 265 (957)
Q Consensus 188 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~~ 265 (957)
++...++.+| .+|||..|+.+.++..+..+.|.|.+++|. +.++|+++|.+.+....
T Consensus 130 ~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~P~---------------------~~~~v~~~T~i~~~~~~ 188 (806)
T 3cf2_A 130 LFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS---------------------PYCIVAPDTVIHCEGEP 188 (806)
T ss_dssp HHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEESSS---------------------SEEECCTTSBCCBCSCC
T ss_pred HHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEEEeCC---------------------CCeEECCCcEEEEeccc
Confidence 3444555555 469999999999999999999999999886 46788899988764321
Q ss_pred ccccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHH
Q 002169 266 NAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTS 344 (957)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTt 344 (957)
... .. ........+|++|||++++++.|+++|.+|+.+ +.|..+|+.+++|||||||||||||+
T Consensus 189 ~~~--~~-------------~~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~ 253 (806)
T 3cf2_A 189 IKR--ED-------------EEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTL 253 (806)
T ss_dssp BCC--CT-------------TSCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHH
T ss_pred cCc--cc-------------ccccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHH
Confidence 100 00 011234568999999999999999999999887 88899999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhh
Q 002169 345 LARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 424 (957)
Q Consensus 345 LaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld 424 (957)
|||++|++++.+++.++++++.++|+|+++..++.+|+.|....|+||||||+|.|+++++...++..++++++|+.+|+
T Consensus 254 LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~md 333 (806)
T 3cf2_A 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (806)
T ss_dssp HHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHH
T ss_pred HHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999988878888999999999999
Q ss_pred ccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHH
Q 002169 425 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLA 504 (957)
Q Consensus 425 ~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~ 504 (957)
++....+++||++||+++.||++++|+||||++|+++.|+.++|.+||+.+++++... .+.+++.+|..|+||+|+||.
T Consensus 334 g~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~ 412 (806)
T 3cf2_A 334 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLA 412 (806)
T ss_dssp HCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHH
T ss_pred cccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHH
Confidence 9988889999999999999999999999999999999999999999999999888766 677899999999999999999
Q ss_pred HHHHHHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchh
Q 002169 505 ALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLR 584 (957)
Q Consensus 505 ~l~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 584 (957)
.+|++|++.|++|..........
T Consensus 413 ~Lv~eA~~~A~~r~~~~i~~~~~--------------------------------------------------------- 435 (806)
T 3cf2_A 413 ALCSEAALQAIRKKMDLIDLEDE--------------------------------------------------------- 435 (806)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTCC---------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcccccccccc---------------------------------------------------------
Confidence 99999999999987553221110
Q ss_pred hcHHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhc
Q 002169 585 GTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEW 664 (957)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~ 664 (957)
....+....+.++.+||..++..+.|+++++...++|+++|++|+|++++|+.|.+.+.|
T Consensus 436 --------------------~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~ 495 (806)
T 3cf2_A 436 --------------------TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQY 495 (806)
T ss_dssp --------------------CCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTT
T ss_pred --------------------ccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHh
Confidence 011233345678899999999999999999999999999999999999999999999999
Q ss_pred hhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEE
Q 002169 665 PQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIF 744 (957)
Q Consensus 665 ~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILf 744 (957)
|+++++.|.+++..+++|+|||||||||||++|+++|++++.+|+.+++++++++|+|++++.++.+|+.|+..+|||||
T Consensus 496 p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~Iif 575 (806)
T 3cf2_A 496 PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLF 575 (806)
T ss_dssp TTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEE
T ss_pred hhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHH
Q 002169 745 FDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREE 823 (957)
Q Consensus 745 iDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~ 823 (957)
|||+|+++..|+.. +++....++++++||.+||++....+|+||+|||+|+.||+|++||||||+.|+|++|+.++|.+
T Consensus 576 iDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~ 655 (806)
T 3cf2_A 576 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655 (806)
T ss_dssp CSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHH
T ss_pred chhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHH
Confidence 99999999988643 33456788999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC-----------------------CCCCCHHH
Q 002169 824 IFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD-----------------------ASRITMQH 880 (957)
Q Consensus 824 Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~-----------------------~~~It~~d 880 (957)
||+.++++.++..++++..||+.|+||||+||+++|++|++.|+++.++ ...|+++|
T Consensus 656 il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d 735 (806)
T 3cf2_A 656 ILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDH 735 (806)
T ss_dssp TTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----C
T ss_pred HHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHH
Confidence 9999999999999999999999999999999999999999999988542 12589999
Q ss_pred HHHHHHhhCCC----chHHHHHHHHHHHHHh
Q 002169 881 LKTAIRHVQPS----EIHSYKELSAKFQRLV 907 (957)
Q Consensus 881 ~~~al~~~~p~----~~~~y~~~~~~~~~~v 907 (957)
|++|+++++|+ +++.|++|.+.|++.-
T Consensus 736 f~~al~~~~pSvs~~~l~~y~~~~~~f~~~~ 766 (806)
T 3cf2_A 736 FEEAMRFARRSVSDNDIRKYEMFAQTLQQSR 766 (806)
T ss_dssp CTTTC---------------CCCC-------
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHhccc
Confidence 99999999998 7789999999887753
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1.2e-70 Score=682.20 Aligned_cols=601 Identities=41% Similarity=0.711 Sum_probs=501.8
Q ss_pred HHHhhcc--CCcccCCCEEEEeecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEcCCccccc
Q 002169 192 CAASWLY--SRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPLNAVS 269 (957)
Q Consensus 192 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~~~~~~ 269 (957)
+++.++. +|||.+|+.+.+........|.|..+.|. ..+.|.+.|.+........
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p~---------------------~~~~v~~~t~~~~~~~~~~-- 190 (806)
T 1ypw_A 134 YLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS---------------------PYCIVAPDTVIHCEGEPIK-- 190 (806)
T ss_dssp TTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEEETTT---------------------TCCBCCSSSEEEECSCCCC--
T ss_pred HHHHHhccCCccccCCCEEEecCCCcceEEEEEeccCC---------------------CCceecCCeEEEecCcccc--
Confidence 5566664 69999999999988888899999999886 4577888888886432210
Q ss_pred ccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHH
Q 002169 270 KSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARL 348 (957)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLara 348 (957)
... ........+|++|+|++++++.|++++.+++.+ +.|.++++.++++|||+|||||||||||++
T Consensus 191 ----~~~---------~~~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLara 257 (806)
T 1ypw_A 191 ----RED---------EEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp ----CCT---------TSCCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHH
T ss_pred ----chh---------hhcccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHH
Confidence 000 001123467899999999999999999998877 788899999999999999999999999999
Q ss_pred HHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc
Q 002169 349 CAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR 428 (957)
Q Consensus 349 lA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~ 428 (957)
+|++++.+++.+++.++.+.+.|+.+..++.+|+.+....|+++||||+|.+++.+.....+...++..+|+.++++...
T Consensus 258 la~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~ 337 (806)
T 1ypw_A 258 VANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp HHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999988777778889999999999999988
Q ss_pred CCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHH
Q 002169 429 TDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCN 508 (957)
Q Consensus 429 ~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~ 508 (957)
..++++|++||+++.+++++++++||++.+.++.|+.++|.+|++.++..+... .+.++..++..++||+++|+..+|+
T Consensus 338 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~~l~~ 416 (806)
T 1ypw_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHHHHHH
T ss_pred cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHHHHHHH
Confidence 889999999999999999999999999999999999999999999988877654 5567889999999999999999999
Q ss_pred HHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHH
Q 002169 509 EAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVS 588 (957)
Q Consensus 509 ~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (957)
+|++.++++..........
T Consensus 417 ea~~~a~r~~~~~i~~~~~------------------------------------------------------------- 435 (806)
T 1ypw_A 417 EAALQAIRKKMDLIDLEDE------------------------------------------------------------- 435 (806)
T ss_dssp HHHHHHHHHTTTTTSCHHH-------------------------------------------------------------
T ss_pred HHHHHHHhhhccccchhhh-------------------------------------------------------------
Confidence 9999988775432111000
Q ss_pred HHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhc
Q 002169 589 EIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKH 668 (957)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~ 668 (957)
.+..+......++.++|..++....|+..++...+.+.+.|++++|++++|+.+.+.+.|+..+
T Consensus 436 ----------------~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~ 499 (806)
T 1ypw_A 436 ----------------TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEH 499 (806)
T ss_dssp ----------------HCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSS
T ss_pred ----------------ccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHhhhhc
Confidence 0011122334567789999999999999998899999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCC
Q 002169 669 QEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEI 748 (957)
Q Consensus 669 ~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEi 748 (957)
++.+..+++.++.++||+||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|+.|+...|||||||||
T Consensus 500 ~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEi 579 (806)
T 1ypw_A 500 PDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDEL 579 (806)
T ss_dssp CTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSH
T ss_pred hHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEECh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCCCC-CCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHH
Q 002169 749 DGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRI 827 (957)
Q Consensus 749 d~l~~~r~~~~-~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~ 827 (957)
|.+...++... +......+++++||.+|++.....+++||+|||+++.+|++++|||||++.|+|++|+.++|.+||+.
T Consensus 580 d~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 659 (806)
T 1ypw_A 580 DSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659 (806)
T ss_dssp HHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTT
T ss_pred hhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHH
Confidence 99987775432 22346789999999999998888899999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC-----------------------CCCCCHHHHHHH
Q 002169 828 HLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD-----------------------ASRITMQHLKTA 884 (957)
Q Consensus 828 ~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~-----------------------~~~It~~d~~~a 884 (957)
++++.++..++++..+++.+.||+++||+++|++|+..|+++.+. ...|+.+||+++
T Consensus 660 ~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a 739 (806)
T 1ypw_A 660 NLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEA 739 (806)
T ss_dssp TTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTSSCCC
T ss_pred HhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHHHH
Confidence 999999888999999999999999999999999999999887532 135889999999
Q ss_pred HHhhCCC----chHHHHHHHHHHHHH
Q 002169 885 IRHVQPS----EIHSYKELSAKFQRL 906 (957)
Q Consensus 885 l~~~~p~----~~~~y~~~~~~~~~~ 906 (957)
++.++|+ .++.|+.|.+.|++.
T Consensus 740 ~~~~~~svs~~~~~~ye~~~~~~~~~ 765 (806)
T 1ypw_A 740 MRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp CCC-----------------------
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHhh
Confidence 8888877 677888888887753
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-51 Score=460.84 Aligned_cols=262 Identities=41% Similarity=0.703 Sum_probs=246.1
Q ss_pred cCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc
Q 002169 628 VRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN 707 (957)
Q Consensus 628 ~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~ 707 (957)
+.|........+.|+++|+||+|++++|++|++.+.||+++|+.|.++|+++++|+|||||||||||++|+|+|++++.+
T Consensus 130 ~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 130 ADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred cCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 44566667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEE
Q 002169 708 FLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 708 ~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
|+.++++++.++|+|++++.+|.+|..|+..+||||||||+|+++..|....++ .....+++++||++||++....+|+
T Consensus 210 f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp EEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred ceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 999999999999999999999999999999999999999999999888654333 3455788999999999998888999
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
||+|||+|+.||||++||||||+.|+|++|+.++|.+||+.+++++++..++++..+|+.|+||||+||+++|++|++.|
T Consensus 290 vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~A 369 (405)
T 4b4t_J 290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYA 369 (405)
T ss_dssp EEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 867 IEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
+++. ...|+.+||+.|++++.+.
T Consensus 370 ir~~--~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 370 LRER--RIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHTT--CSBCCHHHHHHHHHHHHHH
T ss_pred HHcC--CCCcCHHHHHHHHHHHhCc
Confidence 9885 6789999999999987654
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-48 Score=441.37 Aligned_cols=254 Identities=37% Similarity=0.663 Sum_probs=239.6
Q ss_pred HHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Q 002169 636 VILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 715 (957)
Q Consensus 636 ~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~ 715 (957)
.+.+.|+++|+||+|++++|++|++.+.+|++++++|.++|+++++|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC-CCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 716 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
+.++|+|++++.++.+|..|+..+||||||||+|+++..|..... +.....++++++|++||+.....+++||+|||++
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 999999999999999999999999999999999999998865433 2345578899999999999888899999999999
Q ss_pred CCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCC
Q 002169 795 DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 874 (957)
Q Consensus 795 ~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~ 874 (957)
+.||||++||||||+.|+|++|+.++|.+||+.+++++++..+++++.+|..|+||||+||+++|++|++.|+++. ..
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~--~~ 409 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER--RM 409 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT--CS
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999886 66
Q ss_pred CCCHHHHHHHHHhhCCC
Q 002169 875 RITMQHLKTAIRHVQPS 891 (957)
Q Consensus 875 ~It~~d~~~al~~~~p~ 891 (957)
.|+.+||.+|++++.++
T Consensus 410 ~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 410 QVTAEDFKQAKERVMKN 426 (437)
T ss_dssp CBCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhCC
Confidence 79999999999887654
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-48 Score=441.56 Aligned_cols=260 Identities=37% Similarity=0.658 Sum_probs=242.9
Q ss_pred chhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEE
Q 002169 630 PSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFL 709 (957)
Q Consensus 630 ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i 709 (957)
|........+.|+++|+||+|++++|+.|++.+.+|+++++.|.++|+++++|+|||||||||||++|+|+|++++.+|+
T Consensus 165 ~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~ 244 (437)
T 4b4t_L 165 PLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI 244 (437)
T ss_dssp CCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred chhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 33344455678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEE
Q 002169 710 AVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVI 788 (957)
Q Consensus 710 ~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI 788 (957)
.+++++++++|+|++++.++.+|..|+..+||||||||+|+++..|...+.. .....+++++||.+||+.....+++||
T Consensus 245 ~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 245 FSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp EEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred EEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 9999999999999999999999999999999999999999999888554332 344578899999999999888899999
Q ss_pred EecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 002169 789 AATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIE 868 (957)
Q Consensus 789 ~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~ 868 (957)
+|||+|+.||||++||||||+.|+|++|+.++|.+||+.++++++...++++..+|..|+||||+||+++|++|++.|++
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhcCCCCCCHHHHHHHHHhhCCC
Q 002169 869 ENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 869 ~~~~~~~It~~d~~~al~~~~p~ 891 (957)
+. ...|+.+||..|++++.+.
T Consensus 405 ~~--~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 405 DD--RDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp TT--CSSBCHHHHHHHHHHHHHT
T ss_pred cC--CCCCCHHHHHHHHHHHHhc
Confidence 86 5679999999999998775
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-47 Score=437.15 Aligned_cols=252 Identities=40% Similarity=0.672 Sum_probs=237.8
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
+.+.|+++|+||+|++++|++|++.+.+|+.+++.|.++|+++++|+|||||||||||++|+|||++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.++|+|++++.+|.+|..|+..+||||||||+|+++..|.....+ .....++++++|.+||+.....+++||+|||+++
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 999999999999999999999999999999999999888654332 3445678899999999998888999999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.||+|++||||||+.|+|++|+.++|.+||+.+++++++..+++++.||+.|+||||+||+++|++|++.|+++. ...
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~--~~~ 437 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR--RKV 437 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT--CSS
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC--CCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999886 678
Q ss_pred CCHHHHHHHHHhhCC
Q 002169 876 ITMQHLKTAIRHVQP 890 (957)
Q Consensus 876 It~~d~~~al~~~~p 890 (957)
|+.+||..|++++.+
T Consensus 438 it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 438 ATEKDFLKAVDKVIS 452 (467)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhc
Confidence 999999999988753
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-47 Score=438.69 Aligned_cols=255 Identities=38% Similarity=0.624 Sum_probs=240.3
Q ss_pred hHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 635 ~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
....+.|+++|+||+|++++|+.|++.+.+|+.+++.|.++|+++++|+|||||||||||++|+|+|++++.+|+.++++
T Consensus 170 ~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s 249 (434)
T 4b4t_M 170 MEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP 249 (434)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred cccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
++.++|+|++++.++.+|..|+..+||||||||+|+++..|.....+ .....+++++||++||++....+|+||+|||+
T Consensus 250 ~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNr 329 (434)
T 4b4t_M 250 QLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNR 329 (434)
T ss_dssp GGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSS
T ss_pred hhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999888554332 23456788999999999988889999999999
Q ss_pred CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCC
Q 002169 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDA 873 (957)
Q Consensus 794 ~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~ 873 (957)
|+.||||++||||||+.|+|++|+.++|.+||+.+++++++..++++..+|+.|+||||+||+++|++|++.|+++. .
T Consensus 330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~--~ 407 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG--Q 407 (434)
T ss_dssp CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT--C
T ss_pred chhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886 6
Q ss_pred CCCCHHHHHHHHHhhCCC
Q 002169 874 SRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 874 ~~It~~d~~~al~~~~p~ 891 (957)
..|+.+||.+|+.+++|+
T Consensus 408 ~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 408 SSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp SSBCHHHHHHHHHSCSSS
T ss_pred CCcCHHHHHHHHHHHhCC
Confidence 689999999999999886
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-46 Score=428.45 Aligned_cols=251 Identities=37% Similarity=0.618 Sum_probs=237.2
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
..+.|+++|+||+|++++|+.|++.+.+|+.++++|.++|+++++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC-CCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 717 FSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.++|+|++++.++.+|..|+..+||||||||+|+++..|..... +.....+++++||++||++....+++||+|||+++
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999999988855433 33456789999999999998888999999999999
Q ss_pred CCChhhhCCCCcceecccC-CCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCC
Q 002169 796 KIDPALLRPGRFDRLLYVG-PPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDAS 874 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~-~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~ 874 (957)
.||||++||||||+.|+|| +|+.++|..||+.+++++++..+++++.+|..|+||||+||+++|++|++.|+++. ..
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--~~ 400 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--RY 400 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT--CS
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC--CC
Confidence 9999999999999999996 89999999999999999999999999999999999999999999999999999986 66
Q ss_pred CCCHHHHHHHHHhhC
Q 002169 875 RITMQHLKTAIRHVQ 889 (957)
Q Consensus 875 ~It~~d~~~al~~~~ 889 (957)
.|+.+||++|+.++.
T Consensus 401 ~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 401 VILQSDLEEAYATQV 415 (428)
T ss_dssp SBCHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHhh
Confidence 899999999998753
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-44 Score=406.40 Aligned_cols=260 Identities=35% Similarity=0.564 Sum_probs=227.9
Q ss_pred CCceEEEcCCcccccccccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEE
Q 002169 255 HETKVYLYPPLNAVSKSLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVL 333 (957)
Q Consensus 255 ~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vL 333 (957)
+.+.|.+..........++....|..... .....+.++|++|||++++++.|+++|.+|+.+ +.|..+|+.+++|||
T Consensus 109 ~~~~v~l~~~~~~~~~~l~~~~~~~~~~~--~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvL 186 (405)
T 4b4t_J 109 ASQRVCLRSDSYMLHKVLENKADPLVSLM--MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVI 186 (405)
T ss_dssp SSCEEEEETTTCSCCEECCCCCSCCTTSC--EEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEE
T ss_pred CcceeeeecccceeeeecCcccCchhhhc--cccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceE
Confidence 34555555544444444444333332221 233456789999999999999999999999887 888999999999999
Q ss_pred EEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---ch
Q 002169 334 LHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EE 410 (957)
Q Consensus 334 L~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~ 410 (957)
||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|+.|...+||||||||+|+++++|..+. +.
T Consensus 187 L~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~ 266 (405)
T 4b4t_J 187 LYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDS 266 (405)
T ss_dssp EESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGG
T ss_pred EeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999886543 33
Q ss_pred HHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHH
Q 002169 411 LSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEY 490 (957)
Q Consensus 411 ~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~ 490 (957)
...+++.+|++.||++....+++||+|||+|+.||||++||||||+.|+|+.|+.++|.+||+.+++++++. .+.+++.
T Consensus 267 ~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~ 345 (405)
T 4b4t_J 267 EVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRK 345 (405)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHH
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHH
Confidence 567889999999999988899999999999999999999999999999999999999999999999998766 6678999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 491 LSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 491 La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+|..|+||+|+||.++|++|++.|+++
T Consensus 346 lA~~t~G~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 346 VAEKMNGCSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999875
No 10
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-43 Score=398.70 Aligned_cols=229 Identities=35% Similarity=0.591 Sum_probs=214.7
Q ss_pred cccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 288 QATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 288 ~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
...+.++|++|||++++++.|++.|.+|+.+ +.|..+|+.+++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 3456789999999999999999999999887 888999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
++|+|++++.++.+|+.|...+||||||||+|++++.|.... +....+++.+|++.||++....+++||+|||+++.
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh
Confidence 999999999999999999999999999999999999885543 34567888999999999988899999999999999
Q ss_pred chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 444 ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
||||++||||||+.|+|+.|+.++|.+||+.+++++.+. .+.+++.+|..|+||+|+||.++|++|++.|+++
T Consensus 334 LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406 (437)
T ss_dssp CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999998766 6678999999999999999999999999999875
No 11
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-42 Score=393.86 Aligned_cols=230 Identities=32% Similarity=0.569 Sum_probs=214.8
Q ss_pred cccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 288 QATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 288 ~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
...+.++|++|||++++++.|+++|.+|+.+ +.|..+|+.+++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 3456789999999999999999999999887 888999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
++|+|++++.++.+|+.|...+||||||||+|.++.+|...+ .....+++.+++..||+.....+++||+|||+++.
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 999999999999999999999999999999999999886544 23556788899999999988899999999999999
Q ss_pred chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 444 ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
||||++||||||+.|+|+.|+.++|.+||+.+++++.+. .+.+++.||..|+||+|+||.++|++|++.|+++.
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~ 434 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR 434 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999998776 56779999999999999999999999999998763
No 12
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-42 Score=396.91 Aligned_cols=228 Identities=36% Similarity=0.599 Sum_probs=213.9
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
..+.++|++|||++++++.|+++|.+|+.+ +.|..+|+.+++|||||||||||||++|+++|++++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 456789999999999999999999999887 8889999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
+|+|+++..++.+|..|....||||||||+|+++++|...+ +....+++.+||+.||++....+++||+|||+|+.|
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 99999999999999999999999999999999999885543 344577889999999999888899999999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
|||++||||||+.|+|+.|+.++|.+||+.+++++... .+.+++.+|..|+||+|+||.++|++|++.|+++
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~ 405 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD 405 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999998765 6678999999999999999999999999999875
No 13
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-42 Score=396.64 Aligned_cols=229 Identities=38% Similarity=0.610 Sum_probs=214.0
Q ss_pred cccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 288 QATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 288 ~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
...+..+|++|||++++++.|++.|.+|+.+ +.|..+|+++++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 3456789999999999999999999999987 888999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCc---hHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGE---ELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS 443 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~---~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ 443 (957)
++|+|++++.++.+|+.|....||||||||+|+++++|..... ....+++.+|++.||++....+++||+|||+|+.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 9999999999999999999999999999999999998865432 3456788999999999988889999999999999
Q ss_pred chhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 444 IEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 444 ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
||||++||||||+.|+|+.|+.++|.+||+.+++++... .+.+++.+|..|+||+|+||.++|++|++.|+++
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAGMIALRN 405 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999988765 5677999999999999999999999999999876
No 14
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.4e-43 Score=429.18 Aligned_cols=299 Identities=41% Similarity=0.694 Sum_probs=266.9
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
..|.++|+||+|+++++++|++.+.+|+++++.|..++..+|+|+|||||||||||++||++|++++.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
+|+|++++.++.+|+.|+..+||||||||+|++++.|... ......+++++|+.+|+++....+|+||+|||+++.||
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~--~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC--CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC--CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999999887544 33567899999999999998888999999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc-------
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENL------- 871 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~------- 871 (957)
++++|||||++.|+++.|+.++|.+||+.+++++++..++++..+|..|+||+|+||.++|++|++.|+++..
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~ 434 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988743
Q ss_pred --------CCCCCCHHHHHHHHHhhCCC---------------chHHHHHHHHHHHHHhcCchhhhhcccccccchhhhh
Q 002169 872 --------DASRITMQHLKTAIRHVQPS---------------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGS 928 (957)
Q Consensus 872 --------~~~~It~~d~~~al~~~~p~---------------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~ 928 (957)
....|+.+||..|+..++|+ ++..++..++.+++.+..+......+....
T Consensus 435 ~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g------- 507 (806)
T 3cf2_A 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG------- 507 (806)
T ss_dssp CCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-------
T ss_pred cccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-------
Confidence 12357899999999999886 233567778888887776655544432221
Q ss_pred hhhhccCCceEEEeecccCCccc
Q 002169 929 NMWTLIKSISLFLCRFPAGLSQS 951 (957)
Q Consensus 929 ~L~~~~k~~~~fl~~~~~~~g~~ 951 (957)
.++....|+.||+|.|||
T Consensus 508 -----~~~~~gvLl~GPPGtGKT 525 (806)
T 3cf2_A 508 -----MTPSKGVLFYGPPGCGKT 525 (806)
T ss_dssp -----CCCCSCCEEESSTTSSHH
T ss_pred -----CCCCceEEEecCCCCCch
Confidence 122335789999999997
No 15
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-41 Score=386.97 Aligned_cols=229 Identities=35% Similarity=0.592 Sum_probs=214.3
Q ss_pred ccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 289 ATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 289 ~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
..+..+|++|||++++|+.|++.|.+|+.+ +.|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 456789999999999999999999999887 8889999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 368 QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
+|+|+++..++.+|+.|....||||||||+|++++.|.... +....+++.+|++.||++....+++||+|||+++.|
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 99999999999999999999999999999999999874432 346678999999999999888999999999999999
Q ss_pred hhhhhCCCCcceeeeec-CCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 445 EPALRRPGRLDREIEIA-VPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~-~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
|||++||||||+.|+|+ .|+.++|.+||+.+++++... .+.+++.+|..|+||+|+||.++|++|++.|+++.
T Consensus 325 D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~ 398 (428)
T 4b4t_K 325 DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 398 (428)
T ss_dssp CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999996 899999999999999998765 67789999999999999999999999999998763
No 16
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2e-39 Score=359.15 Aligned_cols=272 Identities=46% Similarity=0.881 Sum_probs=248.7
Q ss_pred hhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEe
Q 002169 633 MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVK 712 (957)
Q Consensus 633 ~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~ 712 (957)
+|+++.+.|.++|++|+|++++++.+.+.+.+|+.+++.|..+++.+++++||+||||||||++|+++|++++.+|+.++
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 56778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 713 GPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 713 ~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
++++.++|+|+.++.++.+|..|+...|+||||||+|.+...++.. ........+++++++..|+++....+++||++|
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~at 161 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEE
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 9999999999999999999999999999999999999998876543 222345678999999999988777799999999
Q ss_pred CCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 792 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 792 N~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
|+++.+|++++|+|||++.+++++|+.++|.+|++.++++.++..++++..++..+.||+|+||+++|++|++.|..+.+
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999987643
Q ss_pred C-----------------------CCCCCHHHHHHHHHhhCCC----chHHHHHHHHHHH
Q 002169 872 D-----------------------ASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQ 904 (957)
Q Consensus 872 ~-----------------------~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~~ 904 (957)
. ...|+.+||..|++.++|+ ++..|+.|.+.|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred HhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 0 1368999999999999988 5678888888763
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=340.60 Aligned_cols=252 Identities=45% Similarity=0.805 Sum_probs=216.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
+.|.++|+||+|++++|+.|.+.+.+|+.+++.++++++.+++|++|+|||||||||+|++||++++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
.|.|+.++.++.+|..++...|+++|+||+|.+...++.. ......+++++++.+|++......++++++||+|+.+|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 9999999999999999999999999999999987655332 12234578899999999988878899999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhc---CCCCCcccHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHhcC-
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRK---IPCSSDVNIRELACLS--EGCTGADISLICREAAISAIEENLD- 872 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~---~~~~~~~~l~~la~~t--~g~sg~dl~~l~~eA~~~a~~~~~~- 872 (957)
++++||||||+.|++++|+.++|.+||+.++++ .+...++++..+|..+ +||+|+||.++|++|++.|+++...
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999854 4556789999999875 5999999999999999999987531
Q ss_pred --------CCCCCHHHHHHHHHhhCCCc
Q 002169 873 --------ASRITMQHLKTAIRHVQPSE 892 (957)
Q Consensus 873 --------~~~It~~d~~~al~~~~p~~ 892 (957)
...|+.+||++|+++++|+.
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~ps~ 268 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRSSI 268 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCCCC
T ss_pred ccccccccCCeecHHHHHHHHHHhcCCC
Confidence 34699999999999999983
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-37 Score=346.57 Aligned_cols=263 Identities=37% Similarity=0.668 Sum_probs=236.5
Q ss_pred HhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-CCcEEEEeCCC
Q 002169 637 ILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-GLNFLAVKGPE 715 (957)
Q Consensus 637 ~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-~~~~i~v~~~~ 715 (957)
+.+.|+++|+||+|++++|+.|++.+.+|+++++.|.. +..+++++|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 35779999999999999999999999999999999875 36778999999999999999999999999 89999999999
Q ss_pred cccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-cCCcEEEEEecCCC
Q 002169 716 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRP 794 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-~~~~v~VI~aTN~~ 794 (957)
+.++|+|++++.++.+|..|+..+|+||||||+|.+...+... ......+++++++..|+++. ...+++||++||++
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~ 159 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 159 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCc
Confidence 9999999999999999999999999999999999998776543 33567899999999999875 35689999999999
Q ss_pred CCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC-
Q 002169 795 DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLD- 872 (957)
Q Consensus 795 ~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~- 872 (957)
+.+|++++| ||+..+++++|+.++|.+|++.++++.+.. .+.++..+++.++||+|+||..+|++|++.|+++...
T Consensus 160 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~ 237 (322)
T 1xwi_A 160 WVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSA 237 (322)
T ss_dssp TTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred ccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999 999999999999999999999999887754 5678999999999999999999999999999987421
Q ss_pred ----------------------------------------------CCCCCHHHHHHHHHhhCCC----chHHHHHHHHH
Q 002169 873 ----------------------------------------------ASRITMQHLKTAIRHVQPS----EIHSYKELSAK 902 (957)
Q Consensus 873 ----------------------------------------------~~~It~~d~~~al~~~~p~----~~~~y~~~~~~ 902 (957)
...|+++||..|++.++|+ +.+.|++|.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~ 317 (322)
T 1xwi_A 238 THFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTED 317 (322)
T ss_dssp SEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHT
T ss_pred hhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 1369999999999999999 56788887776
Q ss_pred HH
Q 002169 903 FQ 904 (957)
Q Consensus 903 ~~ 904 (957)
|.
T Consensus 318 ~~ 319 (322)
T 1xwi_A 318 FG 319 (322)
T ss_dssp TC
T ss_pred Hc
Confidence 53
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=6.5e-37 Score=359.16 Aligned_cols=347 Identities=38% Similarity=0.616 Sum_probs=279.8
Q ss_pred HHhhcc--CCcccCCCEEEEeecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEcCCcccccc
Q 002169 193 AASWLY--SRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYPPLNAVSK 270 (957)
Q Consensus 193 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~~~~~~~~ 270 (957)
.|.|.. .+++..|+.+.+...+....|.+....+. ....+.+.|.+.+......
T Consensus 135 ~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~t~~~~~~~~~~--- 190 (489)
T 3hu3_A 135 LKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPS---------------------PYCIVAPDTVIHCEGEPIK--- 190 (489)
T ss_dssp HHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESS---------------------SEEEECTTCEEECCSSCBC---
T ss_pred hHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCC---------------------CceEEcCCeEEEEccCccc---
Confidence 455554 37888999999988888888888777664 4678888998886432110
Q ss_pred cccCCCCCchhhhhhcccccccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHH
Q 002169 271 SLREGTLPNAQIEFQNVQATVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLC 349 (957)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaral 349 (957)
.... ........|++|+|++++++.|++++..++.+ +.|..+++.++.++||+||||||||++|+++
T Consensus 191 --------~~~~----~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 191 --------REDE----EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp --------HHHH----HHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHH
T ss_pred --------cccc----ccccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHH
Confidence 0000 01122357889999999999999999998776 7788899999999999999999999999999
Q ss_pred HHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccC
Q 002169 350 AHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT 429 (957)
Q Consensus 350 A~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~ 429 (957)
|++++.+|+.++|.++.+.+.|+.+..++.+|+.|....|++|||||+|.+.++++....+...+++.+|+..|++....
T Consensus 259 a~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~ 338 (489)
T 3hu3_A 259 ANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (489)
T ss_dssp HHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999888777788899999999999998888
Q ss_pred CCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 430 DGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 430 ~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
.+++||++||+++.++++++|+|||++.++++.|+.++|.+||+.+++.+... .+.+++.++..+.||+++||..+|++
T Consensus 339 ~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~ 417 (489)
T 3hu3_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSE 417 (489)
T ss_dssp SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999887765 56678999999999999999999999
Q ss_pred HHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHH
Q 002169 510 AALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSE 589 (957)
Q Consensus 510 A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (957)
|++.++++..........
T Consensus 418 A~~~a~r~~~~~i~~~~~-------------------------------------------------------------- 435 (489)
T 3hu3_A 418 AALQAIRKKMDLIDLEDE-------------------------------------------------------------- 435 (489)
T ss_dssp HHHHHHHTTTTTCCTTCS--------------------------------------------------------------
T ss_pred HHHHHHHhcccccccccc--------------------------------------------------------------
Confidence 999999875432211100
Q ss_pred HHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHH
Q 002169 590 IADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQRE 653 (957)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~ 653 (957)
.+..+......++++||..++..++|+.++++.+++|+++|+||||..+
T Consensus 436 ---------------~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 436 ---------------TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp ---------------SCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred ---------------ccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 0111223446789999999999999999999999999999999999764
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.5e-36 Score=339.14 Aligned_cols=266 Identities=38% Similarity=0.707 Sum_probs=237.1
Q ss_pred hHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 635 ~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
....+.|+++|++|+|++++++.|.+.+.+|+.+++.+.. +..+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 4456789999999999999999999999999999998876 567788999999999999999999999999999999999
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-cCCcEEEEEecCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNR 793 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-~~~~v~VI~aTN~ 793 (957)
++.++|+|+.++.++.+|..|+...|+||||||+|.+...+... ......+++++++..|++.. ...+++||++||+
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 99999999999999999999999999999999999998766432 34577899999999999884 5568999999999
Q ss_pred CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC
Q 002169 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLD 872 (957)
Q Consensus 794 ~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~ 872 (957)
++.+|++++| ||+..+++++|+.++|.+|++.++.+.+.. .+.++..++..++||+++||.++|++|++.|+++...
T Consensus 164 ~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~ 241 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 241 (322)
T ss_dssp GGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred hhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999999987754 5678999999999999999999999999999987421
Q ss_pred -----------------------------------------CCCCCHHHHHHHHHhhCCC----chHHHHHHHHHHHH
Q 002169 873 -----------------------------------------ASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQR 905 (957)
Q Consensus 873 -----------------------------------------~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~~~ 905 (957)
...|+++||.+|++.++|+ +++.|++|.+.|..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 242 ATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp CEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence 1459999999999999998 67788888887754
No 21
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=6.7e-36 Score=338.38 Aligned_cols=267 Identities=37% Similarity=0.689 Sum_probs=226.9
Q ss_pred hhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 634 REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 634 ~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
..+..+.|.++|++|+|++++++.|.+++.+|+.+++.|.. +..+++++|||||||||||++|+++|++++.+|+.+++
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 34456778999999999999999999999999999999887 56788999999999999999999999999999999999
Q ss_pred CCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc-CCcEEEEEecC
Q 002169 714 PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ-RVNVTVIAATN 792 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~-~~~v~VI~aTN 792 (957)
+++.+.|+|+.++.++.+|..|+...|+||||||+|.+...+... ......+++++|+..|++... ..+++||++||
T Consensus 118 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn 195 (355)
T 2qp9_X 118 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATN 195 (355)
T ss_dssp HHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEEEEEEES
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCeEEEeecC
Confidence 999999999999999999999999999999999999998766433 345678899999999998753 56899999999
Q ss_pred CCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 793 RPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 793 ~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
+++.+|++++| ||+..+++++|+.++|.+|++.++.+.+.. .+.++..|++.++||+|+||.++|++|++.|+++..
T Consensus 196 ~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~ 273 (355)
T 2qp9_X 196 IPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 273 (355)
T ss_dssp CGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999987753 567899999999999999999999999999998732
Q ss_pred -----------------------------------------CCCCCCHHHHHHHHHhhCCC----chHHHHHHHHHHHH
Q 002169 872 -----------------------------------------DASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQR 905 (957)
Q Consensus 872 -----------------------------------------~~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~~~ 905 (957)
....|+++||..|++.++|+ ++..|++|.+.|..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 274 SATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp HCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred HhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 12359999999999999998 56788888887743
No 22
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=2.7e-34 Score=334.50 Aligned_cols=248 Identities=44% Similarity=0.748 Sum_probs=223.7
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
.+.++|+||+|++++++++++.+.+ +.+++.+.+++.+.++|+||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 4678999999999999999999876 678889999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
|+|.....++.+|+.|+..+||||||||||.+...++.. .+......+++++|+.+|+++....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 999999999999999999999999999999998776432 1223345678999999999887777999999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITM 878 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~ 878 (957)
++++|||||++.|++++|+.++|.+|++.++++.++..++++..+++.+.||+|+||+++|++|++.|.++. ...|+.
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~--~~~I~~ 246 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG--RDKITM 246 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSSBCH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC--CCeecH
Confidence 999999999999999999999999999999999988888999999999999999999999999999998764 567999
Q ss_pred HHHHHHHHhhCC
Q 002169 879 QHLKTAIRHVQP 890 (957)
Q Consensus 879 ~d~~~al~~~~p 890 (957)
+||..++.++.+
T Consensus 247 ~dl~~al~~v~~ 258 (476)
T 2ce7_A 247 KDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhc
Confidence 999999998865
No 23
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=1.7e-33 Score=349.24 Aligned_cols=441 Identities=19% Similarity=0.268 Sum_probs=303.4
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
..++++.|.+++++.+.+++ ....+.++||+||||||||++|+++|..+ +..++.++.
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l------------~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVL------------CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHH------------TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCCCccCCHHHHHHHHHHH------------hccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 46788999999998887773 23457789999999999999999999886 667888888
Q ss_pred cccc--ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 363 PEVV--SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 363 ~~l~--~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
..+. ..+.|+.+..++.+|+.+....++||||||+|.+.+.+..... ... +.+.+..+...+++.+|++||.
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~--~~~----~~~~L~~~l~~~~~~~I~at~~ 324 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG--QVD----AANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC--HHH----HHHHHSSCSSSCCCEEEEEECH
T ss_pred HHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc--hHH----HHHHHHHHHhCCCeEEEEEeCc
Confidence 7776 3578899999999999998878899999999999876543221 122 2334444445678899999987
Q ss_pred CC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC----CCCCCChHHHHHHHHHcCCC-----cHHHHHHH
Q 002169 441 PD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG----MEHSLLDSEVEYLSMATHGF-----VGADLAAL 506 (957)
Q Consensus 441 ~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~----~~~~l~~~~l~~La~~t~g~-----~gaDi~~l 506 (957)
++ .+|+++.| ||. .+.++.|+.+++.+|++.++.. ....+++..++.++..+.+| .+..+..+
T Consensus 325 ~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~l 401 (758)
T 1r6b_X 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_dssp HHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHH
T ss_pred hHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHH
Confidence 53 57899998 997 5999999999999999987654 34556777788877766553 44566777
Q ss_pred HHHHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhc
Q 002169 507 CNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGT 586 (957)
Q Consensus 507 ~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (957)
+.+|+..+... ....
T Consensus 402 ld~a~~~~~~~--~~~~--------------------------------------------------------------- 416 (758)
T 1r6b_X 402 IDEAGARARLM--PVSK--------------------------------------------------------------- 416 (758)
T ss_dssp HHHHHHHHHHS--SSCC---------------------------------------------------------------
T ss_pred HHHHHHHHhcc--cccc---------------------------------------------------------------
Confidence 77765433110 0000
Q ss_pred HHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCch---h----hhhHHhhcCCccccccCChHHHHHHHH
Q 002169 587 VSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPS---A----MREVILEVPKVKWEDVGGQREVKTQLM 659 (957)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps---~----~~~~~~e~p~v~~~di~G~~~vk~~l~ 659 (957)
....++.+++..+....... . .......+...-.++++|++++++.+.
T Consensus 417 -------------------------~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~ 471 (758)
T 1r6b_X 417 -------------------------RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALT 471 (758)
T ss_dssp -------------------------CCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHH
T ss_pred -------------------------cCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 00011222222221111000 0 000000111112356899999999988
Q ss_pred HHHhchhhcHHHHHhcCC----CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc------------cccc
Q 002169 660 EAVEWPQKHQEAFKRIGT----RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK------------WVGE 723 (957)
Q Consensus 660 e~i~~~~~~~~~~~~l~~----~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~------------~vg~ 723 (957)
.++... ..|. +|..++||+||||||||++|+++|..++.+|+.++++++... |+|.
T Consensus 472 ~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~ 543 (758)
T 1r6b_X 472 EAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGF 543 (758)
T ss_dssp HHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHH
T ss_pred HHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCc
Confidence 877532 1232 233469999999999999999999999999999999887543 4443
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc---------CCcEEEEEecCCC
Q 002169 724 SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ---------RVNVTVIAATNRP 794 (957)
Q Consensus 724 ~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~---------~~~v~VI~aTN~~ 794 (957)
.+. ..+...++...++|||||||+.+ ...+++.|++.|+...- ..+++||+|||..
T Consensus 544 ~~~--~~l~~~~~~~~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~ 608 (758)
T 1r6b_X 544 DQG--GLLTDAVIKHPHAVLLLDEIEKA-------------HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG 608 (758)
T ss_dssp HHT--THHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSS
T ss_pred ccc--chHHHHHHhCCCcEEEEeCcccc-------------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcc
Confidence 322 22344555566789999999955 46688899999985321 1468899999975
Q ss_pred C-------------------------CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC-------CCC---Cccc
Q 002169 795 D-------------------------KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-------PCS---SDVN 839 (957)
Q Consensus 795 ~-------------------------~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~-------~~~---~~~~ 839 (957)
. .++|++++ ||+.+|.|++|+.+++..|++.++.+. +.. .+..
T Consensus 609 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a 686 (758)
T 1r6b_X 609 VRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEA 686 (758)
T ss_dssp CC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHH
T ss_pred hhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHH
Confidence 4 56889998 999999999999999999999887632 111 2233
Q ss_pred HHHHHHHc--cCCcHHHHHHHHHHHHHHHHHH
Q 002169 840 IRELACLS--EGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 840 l~~la~~t--~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
++.++... ..+.+|+++++++.++..++.+
T Consensus 687 ~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 687 RNWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp HHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred HHHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 55566543 3556889999998887765544
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=7.3e-35 Score=339.32 Aligned_cols=264 Identities=36% Similarity=0.664 Sum_probs=225.0
Q ss_pred hHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-CCcEEEEeC
Q 002169 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-GLNFLAVKG 713 (957)
Q Consensus 635 ~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-~~~~i~v~~ 713 (957)
.+..+.|.++|++|+|++++++.|.+.+.+|+.+++.|.. +..+++++||+||||||||++|+++|+++ +.+|+.+++
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 3445679999999999999999999999999999988875 35677999999999999999999999999 899999999
Q ss_pred CCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-cCCcEEEEEecC
Q 002169 714 PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATN 792 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-~~~~v~VI~aTN 792 (957)
+++.+.|+|++++.++.+|..++...|+||||||+|.+...+... ......+++++++..|++.. ...+++||+|||
T Consensus 202 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn 279 (444)
T 2zan_A 202 SDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATN 279 (444)
T ss_dssp C---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEES
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 999999999999999999999999999999999999998766443 34567899999999999875 356899999999
Q ss_pred CCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 793 RPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 793 ~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
+++.+|++++| ||+..+++++|+.++|..|++.++.+.+.. .+.++..|+..++||+|+||..+|++|++.|+++..
T Consensus 280 ~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 280 IPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp CGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred CccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999887753 567899999999999999999999999999998632
Q ss_pred C-----------------------------------------------CCCCCHHHHHHHHHhhCCC----chHHHHHHH
Q 002169 872 D-----------------------------------------------ASRITMQHLKTAIRHVQPS----EIHSYKELS 900 (957)
Q Consensus 872 ~-----------------------------------------------~~~It~~d~~~al~~~~p~----~~~~y~~~~ 900 (957)
. ...|+++||..|++.++|+ +++.|++|.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~ 437 (444)
T 2zan_A 358 SATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFT 437 (444)
T ss_dssp HCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHT
T ss_pred hhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 1 1368999999999999998 556777766
Q ss_pred HHH
Q 002169 901 AKF 903 (957)
Q Consensus 901 ~~~ 903 (957)
+.|
T Consensus 438 ~~~ 440 (444)
T 2zan_A 438 EDF 440 (444)
T ss_dssp SSC
T ss_pred HHH
Confidence 544
No 25
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=6.9e-34 Score=310.41 Aligned_cols=229 Identities=40% Similarity=0.640 Sum_probs=193.7
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
+..+|++|||++++++.|++.+.+++.+ +.+..+++..++|++|+||||||||||++++|++++..++.+++.++.+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 3467899999999999999999888776 888999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 449 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~ 449 (957)
.++.+..++.+|+.+....|+++|+||+|.++..+.........++..+++..|++......++++++||+|+.+|++++
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~ 164 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAIL 164 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhc
Confidence 99999999999999988889999999999988765432222234677889999999887888999999999999999999
Q ss_pred CCCCcceeeeecCCCHHHHHHHHHHHHcCCC-C-CCChHHHHHHHHHc--CCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 450 RPGRLDREIEIAVPSPAQRLEILHALLSGME-H-SLLDSEVEYLSMAT--HGFVGADLAALCNEAALVCLRRYS 519 (957)
Q Consensus 450 r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~-~-~l~~~~l~~La~~t--~g~~gaDi~~l~~~A~~~a~rr~~ 519 (957)
||||||+.|+++.|+.++|.+||+.+++... . ...+.+++.+|..+ +||+|+||..+|++|++.|+++..
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~ 238 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM 238 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999886522 1 12566789999874 599999999999999999998753
No 26
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.2e-33 Score=308.93 Aligned_cols=228 Identities=31% Similarity=0.553 Sum_probs=209.6
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-CCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-GVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-~~~~i~i~~~~l~~~~ 369 (957)
+..+|++|+|++.+++.|++.+.+|+.+..+..-+..+++++|||||||||||++|+++|+++ +.+++.++++++.+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~ 86 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 86 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhh
Confidence 356789999999999999999999988744433346788999999999999999999999999 8999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-cCCCeEEEEecCCCCCchhhh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-~~~~v~vI~ttN~~~~ld~al 448 (957)
.|+.+..++.+|+.+....|+||||||+|.+++.+.........+++.+|+..|+++. ...+++||++||+++.+|+++
T Consensus 87 ~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al 166 (322)
T 1xwi_A 87 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAI 166 (322)
T ss_dssp CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHH
Confidence 9999999999999999999999999999999998877766778899999999999975 357899999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
+| ||+..++++.|+.++|.+|++.++......+++.+++.++..++||+|+||..+|++|++.++++...
T Consensus 167 ~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 167 RR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQS 236 (322)
T ss_dssp HH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred Hh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99 99999999999999999999999999888888999999999999999999999999999999998754
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.6e-33 Score=305.49 Aligned_cols=263 Identities=44% Similarity=0.772 Sum_probs=228.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
+.|.++|++++|++++++.+.+.+.+++.+++.+..++..++.++||+||||||||++|+++|++++.+++.+++.++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC-CCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
.+.|.....++.+|..+....|+||||||+|.+...+..... ......+.+..++..+++.....+++||+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 999999999999999999999999999999999876644321 1223456677788888877777789999999999999
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
|++++|++||+..++++.|+.++|.+|++.++++..+..+.++..++..+.||+++|++.+|++|...|+.+. ...|+
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~--~~~I~ 247 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL--RDYVT 247 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT--CSSBC
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCcCC
Confidence 9999999999999999999999999999999999888888899999999999999999999999999998875 56799
Q ss_pred HHHHHHHHHhhCCC------chHHHHHHHHHH
Q 002169 878 MQHLKTAIRHVQPS------EIHSYKELSAKF 903 (957)
Q Consensus 878 ~~d~~~al~~~~p~------~~~~y~~~~~~~ 903 (957)
.+|+.+|+..+.+. ....|..|...+
T Consensus 248 ~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 279 (285)
T 3h4m_A 248 MDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLE 279 (285)
T ss_dssp HHHHHHHHHHHHHHHCCC--------------
T ss_pred HHHHHHHHHHHHhccccccCCchHHHHHHHHh
Confidence 99999999876432 344555555443
No 28
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=6.3e-33 Score=299.41 Aligned_cols=248 Identities=39% Similarity=0.699 Sum_probs=219.8
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
+.+..+|++|+|++++++.+.+.+.+ +.+++.+..++...+++++|+||||||||++|+++|++++.+++.+++.++..
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 35788999999999999999998876 67778888888899999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCC-CCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES-DGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~-~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
.+.|...+.++.+|..|....|+++||||+|.+...++... .+.....+.+++++..+++.....+++||++||+++.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 99999999999999999999999999999999987654321 12233457889999999988777789999999999999
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
|++++|+|||++.+++++|+.++|.+|++.++++.++..+.++..+++.+.||+++||.++|++|+..|..+. ...|+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~--~~~i~ 241 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--KRVVS 241 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSSBC
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCccc
Confidence 9999999999999999999999999999999999988888889999999999999999999999999998775 56899
Q ss_pred HHHHHHHHHhhC
Q 002169 878 MQHLKTAIRHVQ 889 (957)
Q Consensus 878 ~~d~~~al~~~~ 889 (957)
.+||+.|+..+.
T Consensus 242 ~~~~~~a~~~~~ 253 (257)
T 1lv7_A 242 MVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 29
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=1.3e-32 Score=341.01 Aligned_cols=485 Identities=20% Similarity=0.253 Sum_probs=294.6
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
..++++.|.+++++.+.+++.. ....++||+||||||||++|+++|..+ +..++.+++
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 4678899999999998887422 345689999999999999999999987 778888877
Q ss_pred ccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 363 PEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 363 ~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
...|.|+.+..++.+|+.+....|+|||||. .....+.|+..| ..+.+.+|++||+.+
T Consensus 245 ---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~---------------~~~~~~~L~~~l----~~~~v~~I~at~~~~ 302 (758)
T 3pxi_A 245 ---GTKYRGEFEDRLKKVMDEIRQAGNIILFIDA---------------AIDASNILKPSL----ARGELQCIGATTLDE 302 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEECC-----------------------CCCT----TSSSCEEEEECCTTT
T ss_pred ---cccccchHHHHHHHHHHHHHhcCCEEEEEcC---------------chhHHHHHHHHH----hcCCEEEEeCCChHH
Confidence 4567889999999999999988899999990 011222333333 367899999999988
Q ss_pred -----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC----CCCCCChHHHHHHHHHcC-----CCcHHHHHHHHH
Q 002169 443 -----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG----MEHSLLDSEVEYLSMATH-----GFVGADLAALCN 508 (957)
Q Consensus 443 -----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~----~~~~l~~~~l~~La~~t~-----g~~gaDi~~l~~ 508 (957)
.++++++| ||. .|.|+.|+.+++.+|++.++.. ....+++..+..++..++ ++.+.+...++.
T Consensus 303 ~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~ 379 (758)
T 3pxi_A 303 YRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLID 379 (758)
T ss_dssp THHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHH
T ss_pred HHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHH
Confidence 79999999 994 5999999999999999987766 455678888888877654 556677777888
Q ss_pred HHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHH
Q 002169 509 EAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVS 588 (957)
Q Consensus 509 ~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (957)
+|+..+..+.......-..+ .+.+............ .........+.....
T Consensus 380 ~a~~~~~~~~~~~p~~~~~l----------------------~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~ 430 (758)
T 3pxi_A 380 EAGSKVRLRSFTTPPNLKEL----------------------EQKLDEVRKEKDAAVQ-------SQEFEKAASLRDTEQ 430 (758)
T ss_dssp HHHHHHHHHTTC--CCTHHH----------------------HHHHHHHHHHHHHHHH-------HCCSHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCcchhhH----------------------HHHHHHHHHHHHHHHh-------CcCHHHHHHHHHHHH
Confidence 77665533321100000000 0000000000000000 000000000000000
Q ss_pred HHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchh---hh----hHHhhcCCccccccCChHHHHHHHHHH
Q 002169 589 EIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSA---MR----EVILEVPKVKWEDVGGQREVKTQLMEA 661 (957)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~---~~----~~~~e~p~v~~~di~G~~~vk~~l~e~ 661 (957)
.+........ ..+..........++.+++.........-. +. +........-.++++|++++++.+.+.
T Consensus 431 ~~~~~l~~~~----~~~~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~ 506 (758)
T 3pxi_A 431 RLREQVEDTK----KSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKA 506 (758)
T ss_dssp HHHHHHHHHH----SGGGHHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHH
Confidence 0000000000 000000001112344455544443322110 00 000111122246799999999999888
Q ss_pred HhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHHHHHHHHHHHHhC
Q 002169 662 VEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARAN 738 (957)
Q Consensus 662 i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~ 738 (957)
+....... ....+|..++||+||||||||++|+++|..+ +.+|+.++++++...+... ...+...++..
T Consensus 507 i~~~~~~~----~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~ 578 (758)
T 3pxi_A 507 VRRARAGL----KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRK 578 (758)
T ss_dssp HHHHTTTC----SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHC
T ss_pred HHHHHccc----CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhC
Confidence 86421100 0001222259999999999999999999997 6899999999988776554 22233445556
Q ss_pred CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCCCC------------C
Q 002169 739 APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRPDK------------I 797 (957)
Q Consensus 739 ~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~~~------------i 797 (957)
.++|||||||+.+ ...+++.|++.|+... ...+++||+|||.+.. +
T Consensus 579 ~~~vl~lDEi~~~-------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f 645 (758)
T 3pxi_A 579 PYSVVLLDAIEKA-------------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAF 645 (758)
T ss_dssp SSSEEEEECGGGS-------------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHS
T ss_pred CCeEEEEeCcccc-------------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhC
Confidence 6789999999855 5678888999998632 2347899999997654 6
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC-------CCC---CcccHHHHHHH--ccCCcHHHHHHHHHHHHHH
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-------PCS---SDVNIRELACL--SEGCTGADISLICREAAIS 865 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~-------~~~---~~~~l~~la~~--t~g~sg~dl~~l~~eA~~~ 865 (957)
.|++++ ||+.+|.|++|+.+++.+|++.++..+ +.. .+..++.|+.. ...++.|+++++++++...
T Consensus 646 ~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~ 723 (758)
T 3pxi_A 646 RPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVED 723 (758)
T ss_dssp CHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHH
T ss_pred CHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHH
Confidence 888888 999999999999999999998877543 221 12234555543 2345688999999988776
Q ss_pred HHHHh
Q 002169 866 AIEEN 870 (957)
Q Consensus 866 a~~~~ 870 (957)
++.+.
T Consensus 724 ~l~~~ 728 (758)
T 3pxi_A 724 RLSEE 728 (758)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 30
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=6e-33 Score=325.55 Aligned_cols=250 Identities=46% Similarity=0.786 Sum_probs=232.2
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
.+.++|++|+|++.+++.+.+.+.+++.+++.|..++..++.++||+||||||||++|++||++++.+|+.++++++.+.
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
|.|+....++.+|..|....|+||||||||.+...+... ......+++++|+..|++.....+++||+|||+++.+|+
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~--~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC--CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc--cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 999999999999999999999999999999998766433 235678999999999999888889999999999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC-------
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD------- 872 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~------- 872 (957)
+++|+|||++.+++++|+.++|.+||+.+++.+++..+.++..++..+.||+++|+..+|++|++.|+++..+
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999988899999999999999999999999999999987532
Q ss_pred --------CCCCCHHHHHHHHHhhCCC
Q 002169 873 --------ASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 873 --------~~~It~~d~~~al~~~~p~ 891 (957)
...|+++||+.|++.++|+
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred ccchhhcccCcCCHHHHHHHHHhCCch
Confidence 1258999999999988876
No 31
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=2.9e-32 Score=304.47 Aligned_cols=230 Identities=32% Similarity=0.539 Sum_probs=206.6
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
.+..+|++|+|++.+++.|++++.+++.+..+...+..++.++||+||||||||++|+++|++++.+++.++++++.+.+
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 91 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcc
Confidence 34567899999999999999999999877444344667889999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-cCCCeEEEEecCCCCCchhhh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-~~~~v~vI~ttN~~~~ld~al 448 (957)
.|+.+..++.+|+.+....|+||||||+|.+.+.+.........++..+|+..|+++. ...+++||++||+++.+++++
T Consensus 92 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al 171 (322)
T 3eie_A 92 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAI 171 (322)
T ss_dssp GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHH
Confidence 9999999999999999999999999999999988766656667889999999999884 567899999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhccc
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSKI 521 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~~ 521 (957)
+| ||+..++++.|+.++|.+|++.++......+++.+++.++..++||+|+||..+|++|.+.++++....
T Consensus 172 ~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 172 RR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp HH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred Hc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 99 999999999999999999999999998888899999999999999999999999999999999987654
No 32
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=1.9e-31 Score=334.39 Aligned_cols=508 Identities=20% Similarity=0.259 Sum_probs=299.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEe
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVN 361 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~ 361 (957)
...++++.|.+++++.+.+++.. ....+++|+||||||||++|+++|+.+ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 34678999999988888877421 345679999999999999999999987 78899999
Q ss_pred ccccc--ccccchhHHHHHHHHHHHhcc-CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec
Q 002169 362 GPEVV--SQNYGESEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438 (957)
Q Consensus 362 ~~~l~--~~~~ge~e~~i~~vf~~a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt 438 (957)
+..+. ..+.|+.+..++.+|+.+... .|+||||||+|.+.+.+...+ ...+.+.|...+ ..+++.+|++|
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g---~~~~~~~L~~~l----~~~~i~~I~at 306 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG---AVDAGNMLKPAL----ARGELRLIGAT 306 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHH----HTTCCCEEEEE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc---hHHHHHHHHHHH----hCCCeEEEEec
Confidence 98887 457889999999999998865 689999999999986543321 122333344444 34678899999
Q ss_pred CCCC----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC----CCCCCChHHHHHHHHHc-----CCCcHHHHHH
Q 002169 439 NRPD----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG----MEHSLLDSEVEYLSMAT-----HGFVGADLAA 505 (957)
Q Consensus 439 N~~~----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~----~~~~l~~~~l~~La~~t-----~g~~gaDi~~ 505 (957)
|.++ .++++++| ||+. +.++.|+.+++.+|++.++.. ....+++..+..++..+ .+|.+.....
T Consensus 307 ~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ 383 (854)
T 1qvr_A 307 TLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAID 383 (854)
T ss_dssp CHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHH
T ss_pred CchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHH
Confidence 8765 47899999 9986 999999999999999877653 35566788888887765 4566777778
Q ss_pred HHHHHHHHHHHHhcccccc-ccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchh
Q 002169 506 LCNEAALVCLRRYSKIQTS-SDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLR 584 (957)
Q Consensus 506 l~~~A~~~a~rr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 584 (957)
++.+|+..+..+....... ..+ .+.+.+..... ..... ............+.
T Consensus 384 lldea~a~~~~~~~~~p~~l~~~-----------------------~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~ 436 (854)
T 1qvr_A 384 LIDEAAARLRMALESAPEEIDAL-----------------------ERKKLQLEIER-EALKK---EKDPDSQERLKAIE 436 (854)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHH-----------------------HHHHHHHHHHH-HHHSS---CSSHHHHSCTHHHH
T ss_pred HHHHHHHHHHhhccCCchhHHHH-----------------------HHHHHHHHHHH-HHHHh---ccccccHHHHHHHH
Confidence 8888766553321100000 000 00000000000 00000 00000000000000
Q ss_pred hcH-------HHHHhhcccCC----------------------CCCCCCCccc------------------------c-c
Q 002169 585 GTV-------SEIADNFHNGV----------------------SDSSGGMFMS------------------------E-K 610 (957)
Q Consensus 585 ~~~-------~~~~~~~~~~~----------------------~~~~~~~~~~------------------------e-~ 610 (957)
... ..+... |... .....+.... + .
T Consensus 437 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (854)
T 1qvr_A 437 AEIAKLTEEIAKLRAE-WEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGAR 515 (854)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCS
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccc
Confidence 000 000000 0000 0000000000 0 0
Q ss_pred cccccccHHHHHHHHHhcCchh-------hhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcc
Q 002169 611 GCALKLELVDFEKARMKVRPSA-------MREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGI 683 (957)
Q Consensus 611 ~~~~~v~~~df~~a~~~~~ps~-------~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~gi 683 (957)
--...++.+++........... ..+.....+..-+++++|++++++.+...+...... +. -..+|..++
T Consensus 516 ~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g---~~-~~~~p~~~v 591 (854)
T 1qvr_A 516 FVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAG---LK-DPNRPIGSF 591 (854)
T ss_dssp SCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGG---CS-CSSSCSEEE
T ss_pred cccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcc---cC-CCCCCceEE
Confidence 0011244455544443332110 001111222334578999999999998887542110 00 001223469
Q ss_pred eeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc------------cccchHHHHHHHHHHHHhCCCeEEEEeCC
Q 002169 684 LMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK------------WVGESEKAVRSLFAKARANAPSIIFFDEI 748 (957)
Q Consensus 684 LL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~------------~vg~~~~~ir~~f~~A~~~~p~ILfiDEi 748 (957)
||+||||||||++|++||..+ +.+|+.++++++... |+|... ...+....+...++|||||||
T Consensus 592 Ll~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi 669 (854)
T 1qvr_A 592 LFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEI 669 (854)
T ss_dssp EEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSG
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecc
Confidence 999999999999999999998 789999999887543 223222 123444455566789999999
Q ss_pred chhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCCcEEEEEecCCC-------------------------
Q 002169 749 DGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRVNVTVIAATNRP------------------------- 794 (957)
Q Consensus 749 d~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~VI~aTN~~------------------------- 794 (957)
+.+ ...+++.|++.|+... ...+++||+|||..
T Consensus 670 ~~l-------------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~ 736 (854)
T 1qvr_A 670 EKA-------------HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVL 736 (854)
T ss_dssp GGS-------------CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ccc-------------CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHH
Confidence 854 4678889999998542 12368899999972
Q ss_pred -CCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC-------CCC---CcccHHHHHHHcc--CCcHHHHHHHHHH
Q 002169 795 -DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-------PCS---SDVNIRELACLSE--GCTGADISLICRE 861 (957)
Q Consensus 795 -~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~-------~~~---~~~~l~~la~~t~--g~sg~dl~~l~~e 861 (957)
..+.|+|+. ||+.++.|.+|+.+++..|++.++.+. +.. .+..+..|+.... .++.|+++++++.
T Consensus 737 ~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~ 814 (854)
T 1qvr_A 737 QQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQR 814 (854)
T ss_dssp HTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHH
T ss_pred HhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHH
Confidence 245778887 999999999999999999998877532 111 2233566666655 5688999999999
Q ss_pred HHHHHHHHh
Q 002169 862 AAISAIEEN 870 (957)
Q Consensus 862 A~~~a~~~~ 870 (957)
+...++.+.
T Consensus 815 ~~~~~~~~~ 823 (854)
T 1qvr_A 815 ELETPLAQK 823 (854)
T ss_dssp HTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776553
No 33
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-32 Score=299.84 Aligned_cols=267 Identities=39% Similarity=0.641 Sum_probs=226.5
Q ss_pred hhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 634 REVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 634 ~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
++...+.++++|++++|++++++.+.+.+.++..+++.+..++ .++.++||+||||||||++|+++|++++.+|+.+++
T Consensus 9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 87 (297)
T 3b9p_A 9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISA 87 (297)
T ss_dssp TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEES
T ss_pred HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeH
Confidence 3444567899999999999999999999999999988887664 567899999999999999999999999999999999
Q ss_pred CCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccC---CcEEEEEe
Q 002169 714 PELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR---VNVTVIAA 790 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~---~~v~VI~a 790 (957)
+++.+.+.|..+..++.+|..+....|+||||||+|.+...+... ......++.++++..+++.... .+++||++
T Consensus 88 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~ 165 (297)
T 3b9p_A 88 ASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS--EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAA 165 (297)
T ss_dssp TTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CEEEEEE
T ss_pred HHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC--cchHHHHHHHHHHHHHhcccccCCCCcEEEEee
Confidence 999999999999999999999999999999999999998766432 2345678889999999987543 57999999
Q ss_pred cCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Q 002169 791 TNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 791 TN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
||+++.++++++| ||+..+++++|+.++|..|++.++++.+.. .+.++..+++.+.||+++|+..+|++|+..++++
T Consensus 166 tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~ 243 (297)
T 3b9p_A 166 TNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE 243 (297)
T ss_dssp ESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHT
T ss_pred cCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999876643 4556889999999999999999999999999886
Q ss_pred hc----------CCCCCCHHHHHHHHHhhCCC----chHHHHHHHHHHHH
Q 002169 870 NL----------DASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQR 905 (957)
Q Consensus 870 ~~----------~~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~~~ 905 (957)
.. ....|+.+||..|+..++|+ ....|++|.+.|..
T Consensus 244 ~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 244 LNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp CC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred HhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 42 23579999999999999987 45677776666543
No 34
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.7e-31 Score=302.16 Aligned_cols=228 Identities=32% Similarity=0.547 Sum_probs=199.9
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
+..+|++|+|++.+++.|++.+.+++.+..+...+..++.+|||+||||||||++|+++|++++.+++.++++++.+.+.
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~ 125 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 125 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC-
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhc
Confidence 45678999999999999999999987774433346678899999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc-CCCeEEEEecCCCCCchhhhh
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIEPALR 449 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~-~~~v~vI~ttN~~~~ld~al~ 449 (957)
|+.+..++.+|+.+....|+||||||+|.+.+.+.........++..+|+..|+++.. ..+++||++||+++.++++++
T Consensus 126 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~ 205 (355)
T 2qp9_X 126 GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 205 (355)
T ss_dssp --CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHH
T ss_pred chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHH
Confidence 9999999999999998999999999999999887666667788999999999998743 567999999999999999999
Q ss_pred CCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 450 RPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 450 r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
| ||+..++++.|+.++|.+|++.++...+..+++.+++.|+..++||+|+||..+|++|++.|+++...
T Consensus 206 r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~ 274 (355)
T 2qp9_X 206 R--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 274 (355)
T ss_dssp H--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999887788999999999999999999999999999999998654
No 35
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=7e-32 Score=305.72 Aligned_cols=264 Identities=38% Similarity=0.691 Sum_probs=228.2
Q ss_pred hHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 635 ~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
++....+.++|++|+|++.+++.+.+.+.+++.+++.+...+ .+++++||+||||||||++|+++|++++.+|+.++++
T Consensus 73 ~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~ 151 (357)
T 3d8b_A 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISAS 151 (357)
T ss_dssp HTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGG
T ss_pred hcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehH
Confidence 344456889999999999999999999999999988877654 6788999999999999999999999999999999999
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--cCCcEEEEEecC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--QRVNVTVIAATN 792 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--~~~~v~VI~aTN 792 (957)
++...|.|+.++.++.+|..+....|+||||||+|.+...+... ......+++++++..+++.. ...+++||++||
T Consensus 152 ~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn 229 (357)
T 3d8b_A 152 SLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 229 (357)
T ss_dssp GGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence 99999999999999999999999999999999999998765332 23467789999999999864 245899999999
Q ss_pred CCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 793 RPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENL 871 (957)
Q Consensus 793 ~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~ 871 (957)
+++.++++++| ||+..+++++|+.++|.+|++.+++..+.. .+.++..+++.+.||+++||..+|++|+..++++..
T Consensus 230 ~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~ 307 (357)
T 3d8b_A 230 RPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQ 307 (357)
T ss_dssp CGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCC
T ss_pred ChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 999999999999999999999999876543 456789999999999999999999999999988632
Q ss_pred ----------CCCCCCHHHHHHHHHhhCCC----chHHHHHHHHHH
Q 002169 872 ----------DASRITMQHLKTAIRHVQPS----EIHSYKELSAKF 903 (957)
Q Consensus 872 ----------~~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~ 903 (957)
+...|+.+||..|+..++|+ +.+.|++|.+.|
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~ 353 (357)
T 3d8b_A 308 TADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTF 353 (357)
T ss_dssp C----------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHH
T ss_pred hhhhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 23579999999999999986 667888877765
No 36
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.98 E-value=6.1e-32 Score=291.47 Aligned_cols=248 Identities=40% Similarity=0.673 Sum_probs=199.4
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
|+++|++++|++++++.+.+.+.+ +.+++.+..++..+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 568999999999999999999887 6778888888999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCC--CcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 721 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDG--VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~--~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
.+.....++.+|..+....|+||||||+|.+...+.....+ .......+.+++..+++.....+++||++||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 99999999999999999999999999999997665332111 1223466788889998876677899999999999999
Q ss_pred hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCccc--HHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 002169 799 PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVN--IRELACLSEGCTGADISLICREAAISAIEENLDASRI 876 (957)
Q Consensus 799 ~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~--l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~I 876 (957)
++++|+|||+..+++++|+.++|.+|++.++.+.+...+.+ ...++..+.||+++|+..+|++|+..|..+. ...|
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~--~~~i 237 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG--HTSV 237 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------C
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC--CCCC
Confidence 99999999999999999999999999999999887765544 4789999999999999999999999998764 5679
Q ss_pred CHHHHHHHHHhhCCC
Q 002169 877 TMQHLKTAIRHVQPS 891 (957)
Q Consensus 877 t~~d~~~al~~~~p~ 891 (957)
+.+||..|++++.+.
T Consensus 238 ~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 238 HTLNFEYAVERVLAG 252 (262)
T ss_dssp CBCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccC
Confidence 999999999877544
No 37
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.98 E-value=4.3e-32 Score=317.67 Aligned_cols=248 Identities=43% Similarity=0.721 Sum_probs=223.7
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
+.++|+||+|++++++.+.+.+.+ +.++..+.+++...++|++|+||||||||++|++||++++.+|+.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 789999999999999999998876 5777888999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 721 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
+|.....++.+|+.++...|+|+||||||.+...++.. ........+.+++++.+|++......+++|++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99999999999999988889999999999997665432 11223446788999999999877778999999999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHH
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQ 879 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~ 879 (957)
+++|||||++.|++++|+.++|.+|++.++++.++..++++..+|+.+.||+|+||+++|++|+..|.++. ...|+.+
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~--~~~It~~ 262 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RRKITMK 262 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC--CSSCCSH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCccCHH
Confidence 99999999999999999999999999999998888889999999999999999999999999999887653 4679999
Q ss_pred HHHHHHHhhCCC
Q 002169 880 HLKTAIRHVQPS 891 (957)
Q Consensus 880 d~~~al~~~~p~ 891 (957)
||.+++.++.+.
T Consensus 263 dl~~al~~v~~~ 274 (499)
T 2dhr_A 263 DLEEAADRVMML 274 (499)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhcc
Confidence 999999987654
No 38
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=2.6e-31 Score=286.30 Aligned_cols=248 Identities=44% Similarity=0.735 Sum_probs=215.5
Q ss_pred hHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 635 EVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 635 ~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
.+..+.|.++|++++|+++++.++.+...+ +.++..+.+++...++|++|+||||||||++++++|+.++.+++.+++.
T Consensus 5 ~~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~ 83 (254)
T 1ixz_A 5 SVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 83 (254)
T ss_dssp ---CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH
Confidence 345567899999999999999999998775 5677889999999999999999999999999999999999999999998
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
++...+.+...+.++.+|+.+....|+++|+||+|.+...+... ........+.+++++.+|++......++++++||+
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~ 163 (254)
T 1ixz_A 84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 163 (254)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESC
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCC
Confidence 88777888888889999999988889999999999987655321 11123346778899999998877777899999999
Q ss_pred CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCC
Q 002169 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDA 873 (957)
Q Consensus 794 ~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~ 873 (957)
|+.+|++++|+|||++.++++.|+.++|.+|++.+.++.++..+.++..+++.+.||+++||+++|++|+..|..+. .
T Consensus 164 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~--~ 241 (254)
T 1ixz_A 164 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--R 241 (254)
T ss_dssp GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--C
T ss_pred chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--C
Confidence 99999999999999999999999999999999999998888888999999999999999999999999999998764 5
Q ss_pred CCCCHHHHHHHH
Q 002169 874 SRITMQHLKTAI 885 (957)
Q Consensus 874 ~~It~~d~~~al 885 (957)
..|+.+|+++++
T Consensus 242 ~~I~~~dl~~a~ 253 (254)
T 1ixz_A 242 RKITMKDLEEAA 253 (254)
T ss_dssp SSBCHHHHHHHT
T ss_pred CCcCHHHHHHHh
Confidence 679999999875
No 39
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=1.2e-31 Score=296.78 Aligned_cols=228 Identities=39% Similarity=0.666 Sum_probs=206.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
+..+|++|+|++++++.|++++.+++.+ +.+.++++.+++++||+||||||||++|+++|++++.+++.++|+++.+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 4567899999999999999999998776 778889999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~ 446 (957)
.|+.+..++.+|+.+....|+||||||+|.+.+.++... .....+++.+|+..|+++....+++||++||+++.+++
T Consensus 90 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~ 169 (301)
T 3cf0_A 90 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP 169 (301)
T ss_dssp HTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCG
T ss_pred cCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccCh
Confidence 999999999999999999999999999999987654321 22345778899999998877788999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYS 519 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~ 519 (957)
+++|+|||++.++++.|+.++|.+|++.+++..... .+.+++.++..++||+|+||.++|++|++.|.++..
T Consensus 170 al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 170 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887654 566788999999999999999999999999998764
No 40
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=7.9e-31 Score=300.47 Aligned_cols=270 Identities=35% Similarity=0.596 Sum_probs=222.4
Q ss_pred chhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEE
Q 002169 630 PSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFL 709 (957)
Q Consensus 630 ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i 709 (957)
....++.+...+.++|++|+|++.+++.+.+.+.++..+++.+..++ .++.++||+||||||||++|++||.+++.+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 99 NLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp TTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred HHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 33445556667899999999999999999999999999888887765 45789999999999999999999999999999
Q ss_pred EEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc--CCcEEE
Q 002169 710 AVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ--RVNVTV 787 (957)
Q Consensus 710 ~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~V 787 (957)
.+++.++.+.|+|+.+..++.+|..++...|+||||||||.+...+... ......+++++++..|++... ..+++|
T Consensus 178 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~v 255 (389)
T 3vfd_A 178 NISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLV 255 (389)
T ss_dssp EECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEE
T ss_pred EeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEE
Confidence 9999999999999999999999999999999999999999997765432 235678999999999998754 457999
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++||+++.+|++++| ||+..++++.|+.++|.+|++.++.+.+.. .+.++..++..+.||++++|..+|++|+..+
T Consensus 256 I~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~ 333 (389)
T 3vfd_A 256 MGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGP 333 (389)
T ss_dssp EEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHH
T ss_pred EEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999876543 3457889999999999999999999999999
Q ss_pred HHHhc----------CCCCCCHHHHHHHHHhhCCC----chHHHHHHHHHHH
Q 002169 867 IEENL----------DASRITMQHLKTAIRHVQPS----EIHSYKELSAKFQ 904 (957)
Q Consensus 867 ~~~~~----------~~~~It~~d~~~al~~~~p~----~~~~y~~~~~~~~ 904 (957)
+++.. +...|+.+||..++..+.++ .++.|++|.+.|.
T Consensus 334 ~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g 385 (389)
T 3vfd_A 334 IRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFG 385 (389)
T ss_dssp HHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC
T ss_pred HHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 98732 23579999999999999987 4556666666554
No 41
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=1.3e-30 Score=303.58 Aligned_cols=229 Identities=31% Similarity=0.544 Sum_probs=199.4
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-CCcEEEEeccccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-GVNLFTVNGPEVVSQ 368 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-~~~~i~i~~~~l~~~ 368 (957)
.+..+|++|+|++.+++.|++++.+++.+..+..-+..+++++||+||||||||++|+++|.++ +.+|+.++++++.+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 3456789999999999999999998877643322345678999999999999999999999999 899999999999999
Q ss_pred ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-cCCCeEEEEecCCCCCchhh
Q 002169 369 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-~~~~v~vI~ttN~~~~ld~a 447 (957)
+.|+.+..++.+|+.+....|+||||||+|.+++.+.........+++.+|+..|+++. ...+++||++||+++.++++
T Consensus 208 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~a 287 (444)
T 2zan_A 208 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSA 287 (444)
T ss_dssp ----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHH
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHH
Confidence 99999999999999999999999999999999988877666778899999999999875 35789999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
++| ||+..+.++.|+.++|.+|++.++...+..+++.+++.|+..+.||+|+||..+|++|++.++++...
T Consensus 288 l~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 288 IRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999 99999999999999999999999998887788999999999999999999999999999999998754
No 42
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=4.3e-30 Score=299.10 Aligned_cols=225 Identities=38% Similarity=0.618 Sum_probs=200.7
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
..+|++|+|+++.++.+++++........+..++...++++||+||||||||++|+++|++++.+|+.++++++...+.|
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g 91 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVG 91 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhc
Confidence 45788999999999999999987655577888999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al 448 (957)
.....++.+|+.|....|+||||||+|.+.++++.. ......+++.+|+..|+++....+++||++||+++.+|+++
T Consensus 92 ~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~al 171 (476)
T 2ce7_A 92 VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPAL 171 (476)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGG
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhh
Confidence 999999999999999999999999999998877532 23445678899999999887777899999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+|+|||++.|.++.|+.++|.+|++.++++.++. .+.+++.++..+.||+|+||.++|++|+..+.++
T Consensus 172 lR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~ 239 (476)
T 2ce7_A 172 LRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239 (476)
T ss_dssp GSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999887654 5566888999999999999999999998888654
No 43
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=2.6e-32 Score=296.16 Aligned_cols=250 Identities=40% Similarity=0.706 Sum_probs=216.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
+.+.+.|++++|++++++.+.+.+.+ +.+++.+..++...+++++|+||||||||++|+++|++++.+++.+++.++..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 46788999999999999999998876 78899999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCC--CCCcchHHHHHHHHHHHhcccc-CCcEEEEEecCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKES--DGVSVSDRVMSQLLVELDGLHQ-RVNVTVIAATNRPD 795 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~--~~~~~~~~v~~~LL~~ld~~~~-~~~v~VI~aTN~~~ 795 (957)
.+.|.....++.+|+.+....|+||||||+|.+...+...+ .......+++++++..+++... ..+++||++||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 99888888888999999999999999999999976542211 1112223455678888876643 34589999999999
Q ss_pred CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCC
Q 002169 796 KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASR 875 (957)
Q Consensus 796 ~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~ 875 (957)
.+|++++|+|||+..+++++|+.++|.++++.++++.++..+.++..++..+.||+|+||+++|++|+..|..+. ...
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~--~~~ 240 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN--QKE 240 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC--CCS
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCC
Confidence 999999999999999999999999999999999998888888889999999999999999999999998886543 567
Q ss_pred CCHHHHHHHHHhhCCC
Q 002169 876 ITMQHLKTAIRHVQPS 891 (957)
Q Consensus 876 It~~d~~~al~~~~p~ 891 (957)
|+.+|+.+++..+.|+
T Consensus 241 i~~~~~~~a~~~~~~~ 256 (268)
T 2r62_A 241 VRQQHLKEAVERGIAG 256 (268)
T ss_dssp CCHHHHHTSCTTCCCC
T ss_pred cCHHHHHHHHHHHhhc
Confidence 9999999999998887
No 44
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=1.3e-29 Score=277.00 Aligned_cols=244 Identities=44% Similarity=0.740 Sum_probs=213.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
+.|.++|++++|++++++++.+...+ +..+..+.++++..++|++|+||||||||+++++||+.++.+++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 44889999999999999999988765 56778899999999999999999999999999999999999999999988877
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCC-CCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKE-SDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
.+.+...+.++.+|+.+....|+++|+||+|.+...+... ........+.+++++.+|++......++++++||+|+.+
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 191 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhC
Confidence 7788888889999999998889999999999887554321 111223467788899999987766678999999999999
Q ss_pred ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002169 798 DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRIT 877 (957)
Q Consensus 798 d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It 877 (957)
|++++|++||++.++++.|+.++|.+|++.++++.++..+.++..+++.+.||+++||+++|++|+..|..+. ...|+
T Consensus 192 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~--~~~I~ 269 (278)
T 1iy2_A 192 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--RRKIT 269 (278)
T ss_dssp CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CCSBC
T ss_pred CHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCCcC
Confidence 9999999999999999999999999999999998888888899999999999999999999999999888764 56799
Q ss_pred HHHHHHHH
Q 002169 878 MQHLKTAI 885 (957)
Q Consensus 878 ~~d~~~al 885 (957)
.+|+++|+
T Consensus 270 ~~dl~~a~ 277 (278)
T 1iy2_A 270 MKDLEEAA 277 (278)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999875
No 45
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=4.8e-30 Score=318.42 Aligned_cols=250 Identities=47% Similarity=0.787 Sum_probs=228.6
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
.+.++|++|+|++++++.+++.+.+|+.+++.|+.+++.++.++||+||||||||++|++||++++.+++.+++.++.+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
+.|+.+..++.+|..+....|+++||||+|.+...++.. ......+++.+++..+++.....++++|++||+++.+|+
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC--CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCT
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc--cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCH
Confidence 999999999999999999999999999999998776433 235667899999999999988889999999999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcC-------
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLD------- 872 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~------- 872 (957)
++.++|||++.+.++.|+.++|.+|++.+++++.+..+.++..++..+.||+++|+..+|++|+..++++...
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~ 435 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHH
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhh
Confidence 9999999999999999999999999999999999988999999999999999999999999999998876432
Q ss_pred --------CCCCCHHHHHHHHHhhCCC
Q 002169 873 --------ASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 873 --------~~~It~~d~~~al~~~~p~ 891 (957)
...++.+++..++....|+
T Consensus 436 ~~~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HCCHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred ccchhhhhhhhhhhhhhhccccccCch
Confidence 2346677777777776654
No 46
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=6.1e-29 Score=271.89 Aligned_cols=227 Identities=38% Similarity=0.638 Sum_probs=203.4
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
+...|++|+|++++++.|++.+..++.. +.+..+++.++.++||+||||||||++|+++|+.++.+++.+++.++...+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 3467889999999999999999888766 778889999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~ 446 (957)
.|+.+..++.+|..+....|+||||||+|.+.+++.... .....+.+..+++.++++....+++||+|||.++.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~ 171 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDP 171 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCH
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCH
Confidence 999999999999999999999999999999988775543 33445666777777777767778999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+++|++||+..+.++.|+.++|.+|++.++...... .+.+++.++..+.||+++||..+|++|...|+++.
T Consensus 172 ~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~ 242 (285)
T 3h4m_A 172 AILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242 (285)
T ss_dssp HHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999887655 55678999999999999999999999999887653
No 47
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=6.6e-29 Score=267.95 Aligned_cols=228 Identities=36% Similarity=0.609 Sum_probs=197.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
...|++|+|++.+++.+++++.+......+..++...+++++|+||||||||++|+++|+.++.+++.+++.++...+.|
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~ 87 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 87 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCC
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhh
Confidence 45788999999999999999877544467777888899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al 448 (957)
+.+..++.+|+.+....|+++||||+|.+.+.+... +.....+.+.+++..++++....+++||++||+++.+++++
T Consensus 88 ~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l 167 (257)
T 1lv7_A 88 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPAL 167 (257)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGG
T ss_pred hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHH
Confidence 999999999999998889999999999998876532 22344577888999999887778899999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
.|++||++.+.++.|+.++|.+|++.+++...+. ++.++..++..+.||+++||..+|++|+..|.++...
T Consensus 168 ~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~ 238 (257)
T 1lv7_A 168 LRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKR 238 (257)
T ss_dssp GSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred cCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999887654 4556788999999999999999999999999876543
No 48
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=278.99 Aligned_cols=226 Identities=35% Similarity=0.597 Sum_probs=198.5
Q ss_pred cccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 290 TVEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 290 ~~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
.....|++|+|++.+++.|++++..++.+ +.+... ..+++++||+||||||||++|+++|.+++.+++.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG-GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc-cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 34568899999999999999999988766 443333 3678999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc--cCCCeEEEEecCCCCCchh
Q 002169 369 NYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC--RTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~--~~~~v~vI~ttN~~~~ld~ 446 (957)
+.|+.+..++.+|..+....|+||||||+|.+.+.+..+......+++.+|+..+++.. ...+++||++||+++.+++
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~ 236 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDE 236 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCH
Confidence 99999999999999999889999999999999988766556677888999999999864 3467999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+++| ||+..+.++.|+.++|.+|++.++......+++.+++.++..+.||+++||..+|++|.+.++++.
T Consensus 237 ~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l 306 (357)
T 3d8b_A 237 AARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL 306 (357)
T ss_dssp HHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHC
T ss_pred HHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999 999999999999999999999999888888889999999999999999999999999999988764
No 49
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.96 E-value=9.7e-29 Score=272.10 Aligned_cols=225 Identities=31% Similarity=0.549 Sum_probs=196.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
...+|++++|.+.+++.|++.+..+..+ +.+..++ .++.++||+||||||||++|+++|++++.+++.++++++.+.+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 94 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKY 94 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcc
Confidence 4567899999999999999999888665 4443333 5688999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccC---CCeEEEEecCCCCCchh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT---DGVLVIAATNRPDSIEP 446 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~---~~v~vI~ttN~~~~ld~ 446 (957)
.|+.+..++.+|..+....|+||||||+|.+...+.........++...|+..+++.... .+++||++||+++.+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~ 174 (297)
T 3b9p_A 95 VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDE 174 (297)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCH
T ss_pred cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCH
Confidence 999999999999999999999999999999998776544445567788899999887432 57999999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+++| ||+..+.++.|+.++|.+|++.++......+++..++.++..+.||+++||..+|++|.+.++++.
T Consensus 175 ~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 175 AALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL 244 (297)
T ss_dssp HHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTC
T ss_pred HHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999999888777789999999999999999999999999999998764
No 50
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=264.20 Aligned_cols=228 Identities=34% Similarity=0.523 Sum_probs=181.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccch
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge 372 (957)
.+|++++|++.+++.|++++......+.+..+++.++.++||+||||||||++|+++|++++.+++.+++.++...+.++
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGL 82 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccCh
Confidence 46889999999999999998875445777788999999999999999999999999999999999999999999988899
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC----chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG----EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~----~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al 448 (957)
.+..++.+|+.+....|+||||||+|.+..++.... .......+..++..+++.....++++|++||.++.+++++
T Consensus 83 ~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l 162 (262)
T 2qz4_A 83 GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGAL 162 (262)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGG
T ss_pred hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHH
Confidence 999999999999988899999999999987664321 2233456777888888876677899999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDS-EVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~-~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
+|+|||++.++++.|+.++|.+|++.++.......... ....++..+.||+++||..+|++|+..|.++...
T Consensus 163 ~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~ 235 (262)
T 2qz4_A 163 MRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHT 235 (262)
T ss_dssp GSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-------
T ss_pred hcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999998877665443 3588999999999999999999999888766443
No 51
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.96 E-value=3.2e-29 Score=292.96 Aligned_cols=360 Identities=20% Similarity=0.246 Sum_probs=241.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC--CcEEEEecccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG--VNLFTVNGPEVVSQN 369 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~--~~~i~i~~~~l~~~~ 369 (957)
...|++++|++++++.+.+++... ..+..+++++||+||||||||++|+++|++++ .+|+.++++++.+++
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~-------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELI-------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTE 105 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSS
T ss_pred hhchhhccCHHHHHHHHHHHHHHH-------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHh
Confidence 345789999999999999887543 23556789999999999999999999999999 899999999999999
Q ss_pred cchhHHHHHHHHHHH---hccCCeEEEEcCccccccCCcCCCchHH----H---------------HHHHHHHHHhhc--
Q 002169 370 YGESEQALHEVFDSA---SQSAPAVVFIDELDAIAPARKDGGEELS----Q---------------RMVATLLNLMDG-- 425 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a---~~~~p~IL~IDEiD~l~~~~~~~~~~~~----~---------------~i~~~Ll~~ld~-- 425 (957)
.|+.+. ++.+|+.| ....|+||||||+|.+++++........ . ++...++..++.
T Consensus 106 ~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~ 184 (456)
T 2c9o_A 106 IKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKER 184 (456)
T ss_dssp SCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTT
T ss_pred hhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhcc
Confidence 999997 99999999 7778999999999999998755421111 1 112234455542
Q ss_pred cccCCCeEEEEecCCCCCchhhhhCCCCcce--eeeecCCC--HHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 426 VCRTDGVLVIAATNRPDSIEPALRRPGRLDR--EIEIAVPS--PAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 426 l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~--~I~i~~P~--~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
+.....++|+++||+++.+|++++|+||||+ .+.++.|+ .++|.+|++.+. ..+++.++..++| |+
T Consensus 185 ~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~--------~~dl~~~a~~t~g--ga 254 (456)
T 2c9o_A 185 VEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT--------LHDLDVANARPQG--GQ 254 (456)
T ss_dssp CCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE--------HHHHHHTC---------
T ss_pred CCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH--------HHHHHHHHHhCCC--hh
Confidence 2233335666899999999999999999999 56677774 366777766432 3468888889999 99
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCc
Q 002169 502 DLAALCNEAALVCLRRYSKIQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSL 581 (957)
Q Consensus 502 Di~~l~~~A~~~a~rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 581 (957)
|+.++|....... . . .
T Consensus 255 dl~~l~~~i~~p~--~--~-----~------------------------------------------------------- 270 (456)
T 2c9o_A 255 DILSMMGQLMKPK--K--T-----E------------------------------------------------------- 270 (456)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhhcccc--h--h-----h-------------------------------------------------------
Confidence 9888875310000 0 0 0
Q ss_pred chhhcHHHHHhhcccCCCCCCCCCccccccccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHH
Q 002169 582 PLRGTVSEIADNFHNGVSDSSGGMFMSEKGCALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEA 661 (957)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~ 661 (957)
+ .. ..+ +.+.+.+.+.
T Consensus 271 ----------------------------------I------------~~-~lr-----------------~~I~~~l~~~ 286 (456)
T 2c9o_A 271 ----------------------------------I------------TD-KLR-----------------GEINKVVNKY 286 (456)
T ss_dssp ----------------------------------------------------------------------CHHHHHHHHH
T ss_pred ----------------------------------H------------HH-HHH-----------------HHHHHHHHHH
Confidence 0 00 000 0000000000
Q ss_pred HhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHH-hCCC
Q 002169 662 VEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKAR-ANAP 740 (957)
Q Consensus 662 i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~-~~~p 740 (957)
++.+. ...|
T Consensus 287 ----------------------------------------------------------------------~~~g~~~v~~ 296 (456)
T 2c9o_A 287 ----------------------------------------------------------------------IDQGIAELVP 296 (456)
T ss_dssp ----------------------------------------------------------------------HHTTSEEEEE
T ss_pred ----------------------------------------------------------------------HHhccccccc
Confidence 00000 0012
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC-------------CCCCChhhhCCCCc
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR-------------PDKIDPALLRPGRF 807 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~-------------~~~id~aLlr~gRf 807 (957)
.|+||||+|.+ ....++.|+..|+... .++ +|++||. ++.+++.+++ ||
T Consensus 297 ~VliIDEa~~l-------------~~~a~~aLlk~lEe~~--~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~ 358 (456)
T 2c9o_A 297 GVLFVDEVHML-------------DIECFTYLHRALESSI--API-VIFASNRGNCVIRGTEDITSPHGIPLDLLD--RV 358 (456)
T ss_dssp CEEEEESGGGC-------------BHHHHHHHHHHTTSTT--CCE-EEEEECCSEEECBTTSSCEEETTCCHHHHT--TE
T ss_pred eEEEEechhhc-------------CHHHHHHHHHHhhccC--CCE-EEEecCCccccccccccccccccCChhHHh--hc
Confidence 49999999977 3567888999988543 344 5555533 6789999999 99
Q ss_pred ceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHc-cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 808 DRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLS-EGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 808 d~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t-~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
.. +.|++|+.++..++++..+...+.. .+..+..++..+ .| +.+....+++.|...|..+. ...|+.+|+.+++
T Consensus 359 ~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~--~~~v~~~~v~~~~ 434 (456)
T 2c9o_A 359 MI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKING--KDSIEKEHVEEIS 434 (456)
T ss_dssp EE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTT--CSSBCHHHHHHHH
T ss_pred ce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcC--CCccCHHHHHHHH
Confidence 65 6999999999999999887644433 233467778887 66 89999999999988887665 6689999999998
Q ss_pred HhhC
Q 002169 886 RHVQ 889 (957)
Q Consensus 886 ~~~~ 889 (957)
..+.
T Consensus 435 ~~~~ 438 (456)
T 2c9o_A 435 ELFY 438 (456)
T ss_dssp HHSC
T ss_pred HHhc
Confidence 8765
No 52
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=4e-28 Score=284.11 Aligned_cols=226 Identities=39% Similarity=0.611 Sum_probs=201.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
..+|++++|+++++..+++++........+.++++..+++++|+||||||||+||+++|++++.+++.++++++...+.|
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g 106 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG 106 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTT
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhh
Confidence 45788999999999999999887545577888999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al 448 (957)
.....++.+|+.+....|+|+||||+|.+...+... ......+.+++|+..|++......+++|++||+|+.+|+++
T Consensus 107 ~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aL 186 (499)
T 2dhr_A 107 VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPAL 186 (499)
T ss_dssp HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTT
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCccc
Confidence 999999999999988889999999999998776531 23445677889999999987777899999999999999999
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
+|+|||++.|.++.|+.++|.+|++.+++...+. .+.++..++..+.||+|+||.++|++|+..|.++.
T Consensus 187 lr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~-~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~ 255 (499)
T 2dhr_A 187 LRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 255 (499)
T ss_dssp SSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCC-CSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC
T ss_pred ccccccceEEecCCCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999988776544 56678999999999999999999999998887653
No 53
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.95 E-value=1.7e-27 Score=256.41 Aligned_cols=227 Identities=39% Similarity=0.606 Sum_probs=196.0
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
+..+|++++|+++.+..+++++........+..+++..+++++|+||||||||||++++|+.++..++.+++.++...+.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 90 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 90 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCT
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHh
Confidence 45678999999999999999887654446778889999999999999999999999999999999999999999888888
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhh
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a 447 (957)
++....++.+|+.+....|+++++||+|.+...+... ......+.+.+++..|++......++++++||+|+.+|++
T Consensus 91 ~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~ 170 (254)
T 1ixz_A 91 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 170 (254)
T ss_dssp THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGG
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHH
Confidence 8888899999999987789999999999998765431 2334567788889999987766778999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
++|++||++.++++.|+.++|.+|++.+++..... .+.++..++..++||+|+||..+|++|+..|.++.
T Consensus 171 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~ 240 (254)
T 1ixz_A 171 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 240 (254)
T ss_dssp GGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999988776544 55668899999999999999999999999887654
No 54
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=3.6e-27 Score=270.07 Aligned_cols=226 Identities=32% Similarity=0.579 Sum_probs=190.2
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-hhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-STLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQN 369 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~ 369 (957)
....|++|+|.+.+++.|.+++..+..+ +.+..++ .++.++||+||||||||++|+++|.+++.+|+.++|.++.+.+
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKY 188 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC----
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccc
Confidence 4567899999999999999999888775 4444444 5678999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc--CCCeEEEEecCCCCCchhh
Q 002169 370 YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR--TDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~--~~~v~vI~ttN~~~~ld~a 447 (957)
.|+.+..++.+|+.+....|+||||||+|.++..+.........++...|+..|++... ..+++||++||+++.++++
T Consensus 189 ~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 268 (389)
T 3vfd_A 189 VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEA 268 (389)
T ss_dssp ---CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHH
Confidence 99999999999999999999999999999998877665556678889999999998754 4679999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYS 519 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~ 519 (957)
++| ||+..++++.|+.++|.+|++.++......+.+..++.++..+.||++++|..+|+.|...++++..
T Consensus 269 l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 269 VLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp HHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred HHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 999 9998999999999999999999999888888999999999999999999999999999998887643
No 55
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.94 E-value=3.4e-26 Score=249.92 Aligned_cols=227 Identities=39% Similarity=0.606 Sum_probs=195.1
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccccc
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNY 370 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ 370 (957)
+..+|++++|+++.++.+++++........+..+++..+++++|+||||||||||++++++.++..++.+++.++...+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 114 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence 45678999999999999999987654457778888888999999999999999999999999999999999999888888
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC---CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhh
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG---GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA 447 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~---~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a 447 (957)
++....++.+|+.+....|+++++||+|.+...+... ......+.+.+++..|++......++++++||+|+.+|++
T Consensus 115 ~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~ 194 (278)
T 1iy2_A 115 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 194 (278)
T ss_dssp THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHH
T ss_pred hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHh
Confidence 8888899999999987889999999999987655321 1234456778888888887666678999999999999999
Q ss_pred hhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 448 LRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 448 l~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
++|++||++.++++.|+.++|.+|++.+++..... .+.++..++..++||+++||..+|++|+..+.++.
T Consensus 195 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~ 264 (278)
T 1iy2_A 195 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 264 (278)
T ss_dssp HHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999988776544 45568899999999999999999999998887653
No 56
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=6.3e-28 Score=261.62 Aligned_cols=225 Identities=36% Similarity=0.596 Sum_probs=187.6
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
...|++|+|.+.+++.|++++......+.+..++...+.++||+||||||||++|+++|++++.+++.+++.++...+.|
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~ 86 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVG 86 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSS
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcc
Confidence 45688999999999999999887544577888899999999999999999999999999999999999999999888888
Q ss_pred hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCC----chHHHHHHHHHHHHhhcccc-CCCeEEEEecCCCCCchh
Q 002169 372 ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGG----EELSQRMVATLLNLMDGVCR-TDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~----~~~~~~i~~~Ll~~ld~l~~-~~~v~vI~ttN~~~~ld~ 446 (957)
.....++.+|+.+....|+||||||+|.+...+..++ .....+++..|+..+++... ..+++||++||.++.+++
T Consensus 87 ~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~ 166 (268)
T 2r62_A 87 LGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDP 166 (268)
T ss_dssp SCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCG
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCH
Confidence 8877788899999888899999999999987653221 11112345567777776543 345899999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
++.|+|||+..+.++.|+.++|.+|++.+++..... .+.+++.++..+.||+|+||..+|++|+..|.++
T Consensus 167 ~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~ 236 (268)
T 2r62_A 167 ALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAALLAGRN 236 (268)
T ss_dssp GGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS
T ss_pred hHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998876544 4556778899999999999999999998877543
No 57
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.91 E-value=2.1e-25 Score=245.79 Aligned_cols=176 Identities=21% Similarity=0.329 Sum_probs=140.1
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHH----HhCCCeEEEEeCCchh
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKA----RANAPSIIFFDEIDGL 751 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A----~~~~p~ILfiDEid~l 751 (957)
+.++|.++|||||||||||++|++||++++.+|+.++++++.+.|+|+.+..++.+|..| +...|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567889999999999999999999999999999999999999999999999999999999 5778999999999999
Q ss_pred hhhcCCCCCCCcchHHHHHHHHHHHhccc-----------cCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHH
Q 002169 752 AAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETD 820 (957)
Q Consensus 752 ~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~e 820 (957)
...+...........++++.|++.||+.. ...+++||+|||+++.+|++++|+|||++.|++ |+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCHHH
Confidence 87554333333345678899999998443 455799999999999999999999999988874 69999
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHH
Q 002169 821 REEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISL 857 (957)
Q Consensus 821 r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~ 857 (957)
|.+|++.++... +++...++..+.||+++++..
T Consensus 190 r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 999999888753 457889999999999988753
No 58
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.91 E-value=1.5e-23 Score=240.86 Aligned_cols=169 Identities=20% Similarity=0.235 Sum_probs=81.2
Q ss_pred ccCCcHHHHHHHHHHHHhhhhh-hhhhhcCC-CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cccch-
Q 002169 297 KLGGLSKEYAILKDIIISSSVK-STLSSLGL-RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYGE- 372 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~-~~~~~l~i-~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~~ge- 372 (957)
.|+|+++.|+.|...+..+..+ ..+..+.. .++.++||+||||||||++|+++|..++.+++.++++.+.. .|+|+
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 5899999999999998776554 32223332 25789999999999999999999999999999999999888 58885
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEe-cCCCCCchhhhhCC
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAA-TNRPDSIEPALRRP 451 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~t-tN~~~~ld~al~r~ 451 (957)
.+..++.+|+.+... +++||++.+... ......++++.+|+..||++....++ +++ ||+++.+|++|+|+
T Consensus 96 ~e~~lr~lf~~a~~~----~~~De~d~~~~~---~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rg 166 (444)
T 1g41_A 96 VDSIIRDLTDSAMKL----VRQQEIAKNRAR---AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREG 166 (444)
T ss_dssp THHHHHHHHHHHHHH----HHHHHHHSCC---------------------------------------------------
T ss_pred HHHHHHHHHHHHHhc----chhhhhhhhhcc---chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcC
Confidence 899999999988765 358998876432 33456789999999999998665554 455 99999999999999
Q ss_pred CCcceeeeecCCCHH-HHHHHHHH
Q 002169 452 GRLDREIEIAVPSPA-QRLEILHA 474 (957)
Q Consensus 452 gRfd~~I~i~~P~~~-~r~~Il~~ 474 (957)
||||+.|++++|+.. .|.+|+..
T Consensus 167 gr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 167 QLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ------------------------
T ss_pred CCcceEEEEcCCCCccchhhhhcC
Confidence 999999999999987 77777653
No 59
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.91 E-value=1.2e-24 Score=239.75 Aligned_cols=178 Identities=21% Similarity=0.282 Sum_probs=140.0
Q ss_pred hhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHH----hccCCeEEEEcC
Q 002169 321 LSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSA----SQSAPAVVFIDE 396 (957)
Q Consensus 321 ~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a----~~~~p~IL~IDE 396 (957)
+...+..++.++|||||||||||++|+++|++++.+++.++++++.+.+.|+.+..++.+|+.| ....|+||||||
T Consensus 28 l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDE 107 (293)
T 3t15_A 28 LKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFIND 107 (293)
T ss_dssp SCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEEC
T ss_pred HhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 3345778899999999999999999999999999999999999999999999999999999988 567899999999
Q ss_pred ccccccCCcCCC--chHHHHHHHHHHHHhhccc-----------cCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCC
Q 002169 397 LDAIAPARKDGG--EELSQRMVATLLNLMDGVC-----------RTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVP 463 (957)
Q Consensus 397 iD~l~~~~~~~~--~~~~~~i~~~Ll~~ld~l~-----------~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P 463 (957)
+|.+++.+.... ....+++...|+++||+.. ...+++||+|||+++.+|++++|+|||++.|+ .|
T Consensus 108 iD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P 185 (293)
T 3t15_A 108 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 185 (293)
T ss_dssp CC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CC
T ss_pred hhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--Cc
Confidence 999988554321 2245677899999998542 45679999999999999999999999998776 57
Q ss_pred CHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHH
Q 002169 464 SPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAA 505 (957)
Q Consensus 464 ~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~ 505 (957)
+.++|.+|++.++...... .+.++..+.||++++|..
T Consensus 186 ~~~~r~~Il~~~~~~~~~~-----~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 186 TREDRIGVCTGIFRTDNVP-----AEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp CHHHHHHHHHHHHGGGCCC-----HHHHHHHHHHSCSCCHHH
T ss_pred CHHHHHHHHHHhccCCCCC-----HHHHHHHhCCCCcccHHH
Confidence 9999999999888754433 677888888999988764
No 60
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.87 E-value=2.4e-23 Score=269.36 Aligned_cols=153 Identities=22% Similarity=0.263 Sum_probs=115.8
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhc----------HHHHHh------cCCC----------CCCc--ceeeCCCCCh
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKH----------QEAFKR------IGTR----------PPTG--ILMFGPPGCS 692 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~----------~~~~~~------l~~~----------~~~g--iLL~GPpGtG 692 (957)
+.++|++|+|++++|+.+.+.+.||+.+ ++.++. .|.. +|+| +++|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4489999999999999999999999855 455655 2333 4555 9999999999
Q ss_pred hhHHHHHHHHHh---CCcEEEEeCCCcc------------cccccc----hHHHHHHHHHHHHhCCCeEEEEeCCchhhh
Q 002169 693 KTLMARAVASEA---GLNFLAVKGPELF------------SKWVGE----SEKAVRSLFAKARANAPSIIFFDEIDGLAA 753 (957)
Q Consensus 693 KTtlAkaiA~~~---~~~~i~v~~~~l~------------~~~vg~----~~~~ir~~f~~A~~~~p~ILfiDEid~l~~ 753 (957)
||++|++++.+. +-+.+.|+..+.+ ++|+++ +++.++.+|.+|+..+||+||+||++++.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999876 4455555555543 678888 899999999999999999999999999998
Q ss_pred hcC---CCCC-CCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 754 IRG---KESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 754 ~r~---~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
.+. ..++ ...+..|+++++|.+|++.....+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 842 2222 2367889999999999998888888887 77754
No 61
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.86 E-value=9.5e-24 Score=246.64 Aligned_cols=204 Identities=20% Similarity=0.261 Sum_probs=145.5
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCCCcc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELF 717 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~l~ 717 (957)
.|...|++++|++++++.+.+.+.+. ..+..+++++||+||||||||++|+++|++++ .+|+.++++++.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 35678999999999999998877542 12566788999999999999999999999999 999999999999
Q ss_pred cccccchHHHHHHHHHHH---HhCCCeEEEEeCCchhhhhcCCCCCCCc-----------------chHHHHHHHHHHHh
Q 002169 718 SKWVGESEKAVRSLFAKA---RANAPSIIFFDEIDGLAAIRGKESDGVS-----------------VSDRVMSQLLVELD 777 (957)
Q Consensus 718 ~~~vg~~~~~ir~~f~~A---~~~~p~ILfiDEid~l~~~r~~~~~~~~-----------------~~~~v~~~LL~~ld 777 (957)
++|+|+++. ++.+|..| +...|+||||||+|+++..|.....+.. ...++.++++..++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999987 99999999 7888999999999999987754321110 01122334566665
Q ss_pred --ccccCCcEEEEEecCCCCCCChhhhCCCCcce--ecccCCCCH--HHHHHHHHHHHhcCCCCCcccHHHHHHHccCCc
Q 002169 778 --GLHQRVNVTVIAATNRPDKIDPALLRPGRFDR--LLYVGPPNE--TDREEIFRIHLRKIPCSSDVNIRELACLSEGCT 851 (957)
Q Consensus 778 --~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~--~i~~~~P~~--~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~s 851 (957)
+......++|+++||+++.+|+++.||||||+ .++++.|+. ++|.+|++.+.. .+++.++..++|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--
Confidence 22333345566899999999999999999999 667788854 678877765543 268889999999
Q ss_pred HHHHHHHHHH
Q 002169 852 GADISLICRE 861 (957)
Q Consensus 852 g~dl~~l~~e 861 (957)
|+|+.++|..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999964
No 62
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.84 E-value=2.3e-20 Score=206.14 Aligned_cols=215 Identities=25% Similarity=0.287 Sum_probs=177.0
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCC---CCCeEEEEcCCCChHHHHHHHHHHHc-------CCcEEEEeccccc
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLR---PTKGVLLHGPPGTGKTSLARLCAHDS-------GVNLFTVNGPEVV 366 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~---~~~~vLL~GppGtGKTtLaralA~~l-------~~~~i~i~~~~l~ 366 (957)
+|+|++++++.|++++........+..+|+. ++.++||+||||||||++|+++|+.+ ..+++.+++.++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 6999999999999999877655555556654 44579999999999999999999887 3389999999999
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC----
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD---- 442 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~---- 442 (957)
+.+.|.....+..+|+.+ .++||||||+|.+...+.. ......++..|+..|+.. ..++++|+++|..+
T Consensus 112 ~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~~~~ 184 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN--RDDLVVILAGYADRMENF 184 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC--TTTCEEEEEECHHHHHHH
T ss_pred hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC--CCCEEEEEeCChHHHHHH
Confidence 999999999999999887 3569999999999865532 223466778899998863 45789999998653
Q ss_pred -CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHH-------cCCCcHHHHHHHHHHHHHHH
Q 002169 443 -SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMA-------THGFVGADLAALCNEAALVC 514 (957)
Q Consensus 443 -~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~-------t~g~~gaDi~~l~~~A~~~a 514 (957)
.++|++++ ||+..+.|+.|+.+++.+|++.++......+++..++.++.. ...-+++++..+++.|...+
T Consensus 185 ~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~ 262 (309)
T 3syl_A 185 FQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQ 262 (309)
T ss_dssp HHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHH
T ss_pred HhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHH
Confidence 24689998 999999999999999999999999988888889888888887 33345899999999999888
Q ss_pred HHHhcc
Q 002169 515 LRRYSK 520 (957)
Q Consensus 515 ~rr~~~ 520 (957)
..|...
T Consensus 263 ~~r~~~ 268 (309)
T 3syl_A 263 ANRLFT 268 (309)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777654
No 63
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.84 E-value=1.5e-20 Score=207.51 Aligned_cols=226 Identities=16% Similarity=0.183 Sum_probs=174.5
Q ss_pred ccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCC---CcceeeCCCCChhhHHHHHHHHHh-------CCcEEEEeCC
Q 002169 645 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPP---TGILMFGPPGCSKTLMARAVASEA-------GLNFLAVKGP 714 (957)
Q Consensus 645 ~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~---~giLL~GPpGtGKTtlAkaiA~~~-------~~~~i~v~~~ 714 (957)
+.+++|++++++.+.+.+.++. .+..+.+.|+..+ .++||+||||||||++|+++|+.+ ..+++.+++.
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 3479999999999999998754 4666666665543 359999999999999999999987 3489999999
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
++.+.+.|.....++.+|..+. ++||||||+|.+...+.. ......+++.|+..|+.. ..++++|++||..
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~ 179 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENN--RDDLVVILAGYAD 179 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC--TTTCEEEEEECHH
T ss_pred HhhhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcC--CCCEEEEEeCChH
Confidence 9999999999999999998884 469999999999754422 245678889999999854 4578899999865
Q ss_pred C-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHc-------cCCcHHHHHHHHHH
Q 002169 795 D-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD-VNIRELACLS-------EGCTGADISLICRE 861 (957)
Q Consensus 795 ~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~-~~l~~la~~t-------~g~sg~dl~~l~~e 861 (957)
+ .++|+|++ ||+..++|++|+.+++.+|++.++.+.+..-+ ..+..++... ..-+++++.++++.
T Consensus 180 ~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~ 257 (309)
T 3syl_A 180 RMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDR 257 (309)
T ss_dssp HHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 4 25789999 99999999999999999999999987665422 2344555542 22258999999999
Q ss_pred HHHHHHHHhcC--CCCCCHHHHH
Q 002169 862 AAISAIEENLD--ASRITMQHLK 882 (957)
Q Consensus 862 A~~~a~~~~~~--~~~It~~d~~ 882 (957)
|+..+..+... ...++.+++.
T Consensus 258 a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 258 ARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHh
Confidence 99877666432 2445554443
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.84 E-value=3.5e-20 Score=229.80 Aligned_cols=285 Identities=19% Similarity=0.229 Sum_probs=207.6
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEEE
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAV 711 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v 711 (957)
...|++++|.++.++.+.+.+. .....+++|+||||||||++|+++|..+ +..++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 4478999999999988877663 2356789999999999999999999886 6678888
Q ss_pred eCCCcc--cccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEE
Q 002169 712 KGPELF--SKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789 (957)
Q Consensus 712 ~~~~l~--~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~ 789 (957)
+...+. .++.|+.+..++.+|..+....++||||||+|.+.+.+.... .... ....+.......++.+|+
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~----~~~~----~~~~L~~~l~~~~~~~I~ 320 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG----GQVD----AANLIKPLLSSGKIRVIG 320 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS----CHHH----HHHHHSSCSSSCCCEEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc----chHH----HHHHHHHHHhCCCeEEEE
Confidence 887776 468899999999999999888899999999999976543221 1222 223344444566889999
Q ss_pred ecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC----CCC-CcccHHHHHHHccC-----CcHHH
Q 002169 790 ATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI----PCS-SDVNIRELACLSEG-----CTGAD 854 (957)
Q Consensus 790 aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~----~~~-~~~~l~~la~~t~g-----~sg~d 854 (957)
+||.++ .+|++|.| ||+ .+.++.|+.+++.+|++.+...+ .+. .+..+..++..+.| +.+.+
T Consensus 321 at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 998653 57899999 997 79999999999999999877652 221 23345666665554 34568
Q ss_pred HHHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHhhCC--------CchHHHHHHHHHHHHHhcCchhhhhcccccccch
Q 002169 855 ISLICREAAISAIEEN--LDASRITMQHLKTAIRHVQP--------SEIHSYKELSAKFQRLVHSNAEADESGYQLRPSK 924 (957)
Q Consensus 855 l~~l~~eA~~~a~~~~--~~~~~It~~d~~~al~~~~p--------~~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 924 (957)
+..++++|+..+.... .....|+.+|+..++..... .+...+..+.+.+.+.+.++...... .....+
T Consensus 398 ~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~--l~~~i~ 475 (758)
T 1r6b_X 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEA--LTEAIK 475 (758)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHH--HHHHHH
Confidence 8899998886655421 12457999999999987642 14556777888888888887665432 112222
Q ss_pred hhhhhhhhccCCceEEEeecccCCcccc
Q 002169 925 SIGSNMWTLIKSISLFLCRFPAGLSQSE 952 (957)
Q Consensus 925 ~~g~~L~~~~k~~~~fl~~~~~~~g~~e 952 (957)
.....+-+..+++..+|+.||+|+|||+
T Consensus 476 ~~~~g~~~~~~p~~~~ll~G~~GtGKT~ 503 (758)
T 1r6b_X 476 MARAGLGHEHKPVGSFLFAGPTGVGKTE 503 (758)
T ss_dssp HHHTTCSCTTSCSEEEEEECSTTSSHHH
T ss_pred HHhcccCCCCCCceEEEEECCCCCcHHH
Confidence 2223355667899999999999999985
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.81 E-value=3.8e-20 Score=229.37 Aligned_cols=271 Identities=19% Similarity=0.249 Sum_probs=175.1
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEE
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFL 709 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i 709 (957)
.....+++++|+++.++.+.+.+.. ....++||+||||||||++|+++|..+ +.+++
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEE
Confidence 3456789999999999998887642 345679999999999999999999997 77888
Q ss_pred EEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEE
Q 002169 710 AVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789 (957)
Q Consensus 710 ~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~ 789 (957)
.+++ ..+|.|+++..++.+|..+....|+||||| . . ....+.|+..|+ ...+.+|+
T Consensus 241 ~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~-------~--------~~~~~~L~~~l~----~~~v~~I~ 296 (758)
T 3pxi_A 241 TLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------A--------IDASNILKPSLA----RGELQCIG 296 (758)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC--C-----------------------CCCTT----SSSCEEEE
T ss_pred Eecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--C-------c--------hhHHHHHHHHHh----cCCEEEEe
Confidence 8777 566889999999999999999999999999 1 0 112223333333 56899999
Q ss_pred ecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-----CcccHHHHHHHc-----cCCcHHH
Q 002169 790 ATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-----SDVNIRELACLS-----EGCTGAD 854 (957)
Q Consensus 790 aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-----~~~~l~~la~~t-----~g~sg~d 854 (957)
+||..+ .+|+++.| || ..|.|+.|+.+++.+|++.+..++... .+..+..++..+ .++.+++
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ 373 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDK 373 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHH
T ss_pred CCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcH
Confidence 999998 69999999 99 569999999999999999887764322 222344555444 3555678
Q ss_pred HHHHHHHHHHHHHHHhc-----------------------------------------------------------CCCC
Q 002169 855 ISLICREAAISAIEENL-----------------------------------------------------------DASR 875 (957)
Q Consensus 855 l~~l~~eA~~~a~~~~~-----------------------------------------------------------~~~~ 875 (957)
...++.+|+..+..+.. ....
T Consensus 374 ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 453 (758)
T 3pxi_A 374 AIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453 (758)
T ss_dssp HHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---
T ss_pred HHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence 88888887765543321 1223
Q ss_pred CCHHHHHHHHHhhCCC--------chHHHHHHHHHHHHHhcCchhhhhcccccccchhhhhhhhhccCCceEEEeecccC
Q 002169 876 ITMQHLKTAIRHVQPS--------EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSIGSNMWTLIKSISLFLCRFPAG 947 (957)
Q Consensus 876 It~~d~~~al~~~~p~--------~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~L~~~~k~~~~fl~~~~~~ 947 (957)
++.+++...+...... +.+.+..+...+.+.++++...... .....+.....+-...+++..+|+.||+|
T Consensus 454 v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~--l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~G 531 (758)
T 3pxi_A 454 VTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVA--VAKAVRRARAGLKDPKRPIGSFIFLGPTG 531 (758)
T ss_dssp CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHH--HHHHHHHHTTTCSCTTSCSEEEEEESCTT
T ss_pred cCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHH--HHHHHHHHHcccCCCCCCceEEEEECCCC
Confidence 4455555554443311 1112233445555556665544221 11111222223445667888999999999
Q ss_pred Ccccc
Q 002169 948 LSQSE 952 (957)
Q Consensus 948 ~g~~e 952 (957)
+|||+
T Consensus 532 tGKT~ 536 (758)
T 3pxi_A 532 VGKTE 536 (758)
T ss_dssp SSHHH
T ss_pred CCHHH
Confidence 99985
No 66
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.80 E-value=6.3e-19 Score=204.72 Aligned_cols=247 Identities=19% Similarity=0.222 Sum_probs=184.0
Q ss_pred hcCCccccccCChHHHH---HHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Q 002169 639 EVPKVKWEDVGGQREVK---TQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 715 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk---~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~ 715 (957)
...+.+|++++|+++++ ..+...+... ...+++|+||||||||++|++||+.++.+|+.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 34567899999999999 6676666421 2267999999999999999999999999999998754
Q ss_pred cccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 716 LFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
. ..+.++.++..+.. ..+.||||||||.+... .++.|+..|+. ..+++|++|
T Consensus 86 ~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~----~~v~lI~at 141 (447)
T 3pvs_A 86 S-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-------------QQDAFLPHIED----GTITFIGAT 141 (447)
T ss_dssp C-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT----TSCEEEEEE
T ss_pred C-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-------------HHHHHHHHHhc----CceEEEecC
Confidence 2 34556667766653 46789999999988432 23347777773 467788777
Q ss_pred --CCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC-------C-CCcccHHHHHHHccCCcHHHHHHHHHH
Q 002169 792 --NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP-------C-SSDVNIRELACLSEGCTGADISLICRE 861 (957)
Q Consensus 792 --N~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~-------~-~~~~~l~~la~~t~g~sg~dl~~l~~e 861 (957)
|....+++++++ ||. ++.+++|+.+++..+++.++.+.. . ..+..++.++..+.| +.+++.++++.
T Consensus 142 t~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~ 217 (447)
T 3pvs_A 142 TENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEM 217 (447)
T ss_dssp SSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHH
T ss_pred CCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 444579999999 885 778999999999999999987622 1 123346778888777 78899999988
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhhCCC---chHHHHHHHHHHHHHhcCchhhhhcccccccchhh
Q 002169 862 AAISAIEENLDASRITMQHLKTAIRHVQPS---EIHSYKELSAKFQRLVHSNAEADESGYQLRPSKSI 926 (957)
Q Consensus 862 A~~~a~~~~~~~~~It~~d~~~al~~~~p~---~~~~y~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 926 (957)
++..+.....+...||.+++.+++...... ..+.+.+....|.+++.+++.++.+++..+.....
T Consensus 218 a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~G 285 (447)
T 3pvs_A 218 MADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAG 285 (447)
T ss_dssp HHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 876653221123579999999999876543 34566777888999999999999888777665443
No 67
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.80 E-value=9e-19 Score=198.14 Aligned_cols=221 Identities=23% Similarity=0.292 Sum_probs=163.7
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC--cEEEEeCCCccc
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPELFS 718 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~~~l~~ 718 (957)
|...|++++|++++++.+....... . .+..+++++||+||||||||++|+++|+.++. +|+.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~-------~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI-------R-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH-------H-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHH-------H-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 4556999999999998876555321 1 14445678999999999999999999999874 888888766443
Q ss_pred ccc-------------------------------------------------cchHHHHHHHHHHHHh-----C----CC
Q 002169 719 KWV-------------------------------------------------GESEKAVRSLFAKARA-----N----AP 740 (957)
Q Consensus 719 ~~v-------------------------------------------------g~~~~~ir~~f~~A~~-----~----~p 740 (957)
.+. |+....++..+..+.. + .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 332 2234455666655433 1 26
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEec-----------CCCCCCChhhhCCCCcce
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT-----------NRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT-----------N~~~~id~aLlr~gRfd~ 809 (957)
+||||||+|.+. ...++.|+..++.. ...++++++. |.++.+++++++ ||..
T Consensus 191 ~vl~IDEi~~l~-------------~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~ 253 (368)
T 3uk6_A 191 GVLFIDEVHMLD-------------IESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI 253 (368)
T ss_dssp CEEEEESGGGSB-------------HHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE
T ss_pred ceEEEhhccccC-------------hHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE
Confidence 799999999763 45667777777643 2244444433 347789999999 9965
Q ss_pred ecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 810 LLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
+.|++|+.+++.+|++..+...+.. .+..+..+++.+.+.+++++.++|+.|+..|..+. ...|+.+|+++++..+
T Consensus 254 -i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~--~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK--GTEVQVDDIKRVYSLF 330 (368)
T ss_dssp -EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHS
T ss_pred -EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHh
Confidence 7999999999999999988775543 33457788888884499999999999999887764 6789999999999874
Q ss_pred C
Q 002169 889 Q 889 (957)
Q Consensus 889 ~ 889 (957)
.
T Consensus 331 ~ 331 (368)
T 3uk6_A 331 L 331 (368)
T ss_dssp B
T ss_pred c
Confidence 4
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.78 E-value=1.1e-18 Score=218.97 Aligned_cols=202 Identities=25% Similarity=0.329 Sum_probs=135.1
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEE
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLA 710 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~ 710 (957)
...++++++|.++..+.+.+.+. .....+++|+||||||||++|+++|..+ +.+++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 35678999999998888877663 2345679999999999999999999987 889999
Q ss_pred EeCCCcc--cccccchHHHHHHHHHHHHhC-CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 711 VKGPELF--SKWVGESEKAVRSLFAKARAN-APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 711 v~~~~l~--~~~vg~~~~~ir~~f~~A~~~-~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
++++.+. ..|.|+.+..++.+|..+... .|+||||||+|.+.+.+...+ ...+.+.|...++ ..++.+
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~----~~~i~~ 302 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-----AVDAGNMLKPALA----RGELRL 302 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH----TTCCCE
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-----hHHHHHHHHHHHh----CCCeEE
Confidence 9998887 568899999999999999875 689999999999975543221 1223334444444 457889
Q ss_pred EEecCCCC----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC----CC-CcccHHHHHHHc-----cCCcHH
Q 002169 788 IAATNRPD----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP----CS-SDVNIRELACLS-----EGCTGA 853 (957)
Q Consensus 788 I~aTN~~~----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~----~~-~~~~l~~la~~t-----~g~sg~ 853 (957)
|++||.++ .+|+++.| ||+ .+.++.|+.+++.+|++.++.++. +. .+..+..++..+ .+|...
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHH
T ss_pred EEecCchHHhhhccCHHHHh--CCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChH
Confidence 99999775 47999999 998 499999999999999987776432 21 222344555444 345566
Q ss_pred HHHHHHHHHHHHHH
Q 002169 854 DISLICREAAISAI 867 (957)
Q Consensus 854 dl~~l~~eA~~~a~ 867 (957)
+...++.+|+..+.
T Consensus 380 kai~lldea~a~~~ 393 (854)
T 1qvr_A 380 KAIDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776665443
No 69
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.78 E-value=5.5e-18 Score=189.62 Aligned_cols=219 Identities=19% Similarity=0.209 Sum_probs=169.2
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
.+.+.+|++++|++.+++.+.+++..... ...++.++||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~- 92 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE- 92 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-
Confidence 34556899999999999999988864321 134567899999999999999999999999999999987652
Q ss_pred ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc----------------C
Q 002169 719 KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ----------------R 782 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~----------------~ 782 (957)
....+...+.. ...+++|||||||.+. ...+..|+..|+...- .
T Consensus 93 -----~~~~~~~~~~~--~~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 93 -----KSGDLAAILTN--LSEGDILFIDEIHRLS-------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp -----SHHHHHHHHHT--CCTTCEEEEETGGGCC-------------HHHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred -----chhHHHHHHHh--ccCCCEEEEechhhcC-------------HHHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 23334444433 3456799999999763 4456677777765321 1
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 002169 783 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICRE 861 (957)
Q Consensus 783 ~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~e 861 (957)
.++++|++||+...++++|++ ||+..+.+++|+.+++.++++.++.+.+.. .+..+..++..+.| +.+++.++++.
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~ 229 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKR 229 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHH
Confidence 148899999999999999999 999999999999999999999999877654 23346777776666 78999999998
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 862 AAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 862 A~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
+...+.... ...|+.+++..++......
T Consensus 230 ~~~~a~~~~--~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 230 VRDFADVND--EEIITEKRANEALNSLGVN 257 (338)
T ss_dssp HHHHHHHTT--CSEECHHHHHHHHHHHTCC
T ss_pred HHHHHHhhc--CCccCHHHHHHHHHHhCCc
Confidence 887776543 5579999999998876543
No 70
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.78 E-value=1e-19 Score=216.68 Aligned_cols=227 Identities=21% Similarity=0.251 Sum_probs=151.4
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc---
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS--- 718 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~--- 718 (957)
..-+++++|++++++.+.+.+...... ... ++..++|+||||||||++|++||+.++.+++.+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 344678999999999998776432111 112 4557999999999999999999999999999999876543
Q ss_pred ------ccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc-----------
Q 002169 719 ------KWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ----------- 781 (957)
Q Consensus 719 ------~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~----------- 781 (957)
.|+|...+.+...|..+....| ||||||||.+...+. ...++.|+..|+....
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~---------~~~~~~LL~~ld~~~~~~~~~~~~~~~ 219 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR---------GDPSSAMLEVLDPEQNSSFSDHYIEET 219 (543)
T ss_dssp --------------CHHHHHHTTCSSSE-EEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCC
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc---------cCHHHHHHHHHhhhhcceeecccCCee
Confidence 5777777778888888877766 999999999865432 1134557777764321
Q ss_pred --CCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHH-----hcCCCCC------cccHHHHHHHcc
Q 002169 782 --RVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL-----RKIPCSS------DVNIRELACLSE 848 (957)
Q Consensus 782 --~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l-----~~~~~~~------~~~l~~la~~t~ 848 (957)
..+++||+|||+++.++++|++ ||+ +|+++.|+.+++.+|++.++ +..++.. +..+..++....
T Consensus 220 ~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~ 296 (543)
T 3m6a_A 220 FDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYT 296 (543)
T ss_dssp CBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHC
T ss_pred ecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCC
Confidence 1578999999999999999999 995 79999999999999999877 3333321 223444444333
Q ss_pred -CCcHHHHHHHHHHHHHHH----HHHhcCCCCCCHHHHHHHHHhh
Q 002169 849 -GCTGADISLICREAAISA----IEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 849 -g~sg~dl~~l~~eA~~~a----~~~~~~~~~It~~d~~~al~~~ 888 (957)
....|++++.+..++..+ +........|+.+++.+++...
T Consensus 297 ~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 297 REAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred hhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 234566665555544444 3333234568999999888653
No 71
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.78 E-value=1.1e-18 Score=191.99 Aligned_cols=241 Identities=20% Similarity=0.264 Sum_probs=167.5
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhc-CCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-ccccc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRI-GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVGE 723 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l-~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~-~~vg~ 723 (957)
++++|++++++.+..++..+.........+ ....+.+++|+||||||||++|+++|+.++.+++.++++++.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 568999999999998876532221111100 1235678999999999999999999999999999999988866 56664
Q ss_pred h-HHHHHHHHHHH-----HhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------cCCcEEEEE
Q 002169 724 S-EKAVRSLFAKA-----RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTVIA 789 (957)
Q Consensus 724 ~-~~~ir~~f~~A-----~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~VI~ 789 (957)
. ...++.++..+ ....++||||||+|.+....... ........+.+.|+..|++.. ...++++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~-~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS-GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC-SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc-ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 3 34556665532 11235699999999987654221 111222345788888888642 234678888
Q ss_pred e----cCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHH-----------HHhcCCC---CCcccHHHHHHHcc---
Q 002169 790 A----TNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRI-----------HLRKIPC---SSDVNIRELACLSE--- 848 (957)
Q Consensus 790 a----TN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~-----------~l~~~~~---~~~~~l~~la~~t~--- 848 (957)
+ ++.+..+++++++ ||+..++|++|+.+++.+|++. .+...+. ..+..++.+++.+.
T Consensus 174 ~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 251 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 251 (310)
T ss_dssp EECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhc
Confidence 8 4577889999998 9998899999999999999983 1112222 12334666776662
Q ss_pred ----CCcHHHHHHHHHHHHHHHHHHhcC--C--CCCCHHHHHHHHHhhC
Q 002169 849 ----GCTGADISLICREAAISAIEENLD--A--SRITMQHLKTAIRHVQ 889 (957)
Q Consensus 849 ----g~sg~dl~~l~~eA~~~a~~~~~~--~--~~It~~d~~~al~~~~ 889 (957)
+.+.|++.++|+.+...+..+... . ..|+.+|+++++....
T Consensus 252 ~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 252 EKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSS
T ss_pred ccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhh
Confidence 358999999999887665544321 1 1499999999987653
No 72
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.77 E-value=8.3e-18 Score=186.70 Aligned_cols=218 Identities=23% Similarity=0.297 Sum_probs=163.8
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
..+.+|++++|.+.+++.+.+.+..... ....+.+++|+||||||||++|+++++.++.+++.++++.+..
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKA--------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHH--------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHc--------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 4556899999999999999888764211 1234578999999999999999999999999999999877632
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc----------------cCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRV 783 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----------------~~~ 783 (957)
...+...|..+ ...+++|||||+|.+. ......|+..++... ...
T Consensus 77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~-------------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 -----PGDLAAILANS-LEEGDILFIDEIHRLS-------------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp -----HHHHHHHHTTT-CCTTCEEEETTTTSCC-------------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred -----hHHHHHHHHHh-ccCCCEEEEECCcccc-------------cchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 22333333321 1456799999999763 334456666666432 113
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
++++|++||.+..+++++.+ ||+.++.+++|+.+++.++++.++.+.+.. .+..+..++..+.| +.+++.++++.+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 57899999999999999998 998899999999999999999998876544 23446778888877 678999998877
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 002169 863 AISAIEENLDASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 863 ~~~a~~~~~~~~~It~~d~~~al~~~~p 890 (957)
...+... ....|+.+++..++.....
T Consensus 215 ~~~a~~~--~~~~i~~~~~~~~~~~~~~ 240 (324)
T 1hqc_A 215 RDFAQVA--GEEVITRERALEALAALGL 240 (324)
T ss_dssp TTTSTTT--SCSCCCHHHHHHHHHHHTC
T ss_pred HHHHHHh--cCCCCCHHHHHHHHHHhcc
Confidence 6655432 2457999999988877653
No 73
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=1.2e-19 Score=208.62 Aligned_cols=169 Identities=21% Similarity=0.246 Sum_probs=86.0
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCC-CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc-ccccc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTR-PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS-KWVGE 723 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~-~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~-~~vg~ 723 (957)
++|+|++++|+.+..++.+++++...+..+... +++++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 579999999999999998877776665554432 5678999999999999999999999999999999999888 59995
Q ss_pred -hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEe-cCCCCCCChhh
Q 002169 724 -SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAA-TNRPDKIDPAL 801 (957)
Q Consensus 724 -~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~a-TN~~~~id~aL 801 (957)
.+..++.+|..|... +++||++.+.... .....++++++|+.+||++....++ +++ ||+++.+|+||
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~-----~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL 163 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA-----EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKL 163 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc-----hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHH
Confidence 789999999999875 4589988764322 2346689999999999998665454 454 99999999999
Q ss_pred hCCCCcceecccCCCCHH-HHHHHH
Q 002169 802 LRPGRFDRLLYVGPPNET-DREEIF 825 (957)
Q Consensus 802 lr~gRfd~~i~~~~P~~~-er~~Il 825 (957)
+||||||+.|+++.|+.. .|.+|+
T Consensus 164 ~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 164 REGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -------------------------
T ss_pred HcCCCcceEEEEcCCCCccchhhhh
Confidence 999999999999999987 677775
No 74
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.75 E-value=6.1e-18 Score=183.66 Aligned_cols=228 Identities=18% Similarity=0.217 Sum_probs=158.3
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc-cccccch
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF-SKWVGES 724 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~-~~~vg~~ 724 (957)
+.++|+....+.+.+.... ..+.+...+..++.++||+||||||||++|+++|..++.+|+.+++++.+ +...+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~---l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGEL---LVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHH---HHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHH---HHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 4567777766655553211 12233344567778899999999999999999999999999999887532 2222233
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-cCCcEEEEEecCCCCCCCh-hhh
Q 002169 725 EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-QRVNVTVIAATNRPDKIDP-ALL 802 (957)
Q Consensus 725 ~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-~~~~v~VI~aTN~~~~id~-aLl 802 (957)
...++.+|..+....++||||||+|.+...+... ......+++.|...+++.. ...+++||++||.++.+++ .+.
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~ 186 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG---PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML 186 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT---TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC---hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh
Confidence 4677889999988889999999999997654322 2345677777777777653 3446889999999988887 455
Q ss_pred CCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCC----cHHHHHHHHHHHHHHHHHHhcCCCCCCH
Q 002169 803 RPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGC----TGADISLICREAAISAIEENLDASRITM 878 (957)
Q Consensus 803 r~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~----sg~dl~~l~~eA~~~a~~~~~~~~~It~ 878 (957)
+ ||+..|.+|+++. |.+|.+.......+ .+.++..+++.+.|| +.+++.++++.|...+ .....
T Consensus 187 ~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-------~~~~~ 254 (272)
T 1d2n_A 187 N--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-------PEYRV 254 (272)
T ss_dssp T--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-------GGGHH
T ss_pred c--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-------hHHHH
Confidence 4 9988888866655 34444444433333 455688899999998 5778777777654322 23456
Q ss_pred HHHHHHHHhhCCC
Q 002169 879 QHLKTAIRHVQPS 891 (957)
Q Consensus 879 ~d~~~al~~~~p~ 891 (957)
+++..++......
T Consensus 255 ~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 255 RKFLALLREEGAS 267 (272)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHcCCc
Confidence 6777777666554
No 75
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.74 E-value=5e-18 Score=192.35 Aligned_cols=237 Identities=20% Similarity=0.252 Sum_probs=161.4
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHh-cC-CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc-cccc
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKR-IG-TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK-WVGE 723 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~-l~-~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~-~vg~ 723 (957)
.|+|++.+++.+..++............ .. ..++.++||+||||||||++|++||+.++.+|+.++++++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 4799999999999888543222211000 01 1356789999999999999999999999999999999888754 7777
Q ss_pred h-HHHHHHHHHHH----HhCCCeEEEEeCCchhhhhcCCCCCCCcc-hHHHHHHHHHHHhccc-----------------
Q 002169 724 S-EKAVRSLFAKA----RANAPSIIFFDEIDGLAAIRGKESDGVSV-SDRVMSQLLVELDGLH----------------- 780 (957)
Q Consensus 724 ~-~~~ir~~f~~A----~~~~p~ILfiDEid~l~~~r~~~~~~~~~-~~~v~~~LL~~ld~~~----------------- 780 (957)
. ...++.+|..+ ....++||||||+|.+...+.....+... ..++++.|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55667777665 33456799999999998765443222222 2358999999999431
Q ss_pred --cCCcEEEEEecCCC----------CC-----------------------------------CChhhhCCCCcceeccc
Q 002169 781 --QRVNVTVIAATNRP----------DK-----------------------------------IDPALLRPGRFDRLLYV 813 (957)
Q Consensus 781 --~~~~v~VI~aTN~~----------~~-----------------------------------id~aLlr~gRfd~~i~~ 813 (957)
...++++|+++|.. .. +.|+|+. ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 11234444444432 11 6788887 99999999
Q ss_pred CCCCHHHHHHHHHH----HHh-------cCCCC---CcccHHHHHH--HccCCcHHHHHHHHHHHHHHHHHHhcCCC---
Q 002169 814 GPPNETDREEIFRI----HLR-------KIPCS---SDVNIRELAC--LSEGCTGADISLICREAAISAIEENLDAS--- 874 (957)
Q Consensus 814 ~~P~~~er~~Il~~----~l~-------~~~~~---~~~~l~~la~--~t~g~sg~dl~~l~~eA~~~a~~~~~~~~--- 874 (957)
++|+.+++.+|++. ++. ..+.. .+..++.|+. ....+.+|+|++++++++..++.+.....
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~ 333 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVE 333 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCc
Confidence 99999999998875 221 12222 2233556664 33456689999999999998887754332
Q ss_pred --CCCHHHHHHHH
Q 002169 875 --RITMQHLKTAI 885 (957)
Q Consensus 875 --~It~~d~~~al 885 (957)
.|+.+++++.+
T Consensus 334 ~~~I~~~~v~~~~ 346 (363)
T 3hws_A 334 KVVIDESVIDGQS 346 (363)
T ss_dssp EEECHHHHTTCCS
T ss_pred eeEEcHHHHhCcC
Confidence 36666665443
No 76
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.72 E-value=5.6e-17 Score=183.39 Aligned_cols=205 Identities=21% Similarity=0.250 Sum_probs=154.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEeccccccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVSQNY 370 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~~~~l~~~~~ 370 (957)
..|+++.|.+..++.+..++.... .+..++.++||+||||||||++|+++|+.++. +++.+++..+...+.
T Consensus 41 ~~~~~ivG~~~~~~~l~~l~~~~~-------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 113 (368)
T 3uk6_A 41 QASQGMVGQLAARRAAGVVLEMIR-------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEM 113 (368)
T ss_dssp SEETTEESCHHHHHHHHHHHHHHH-------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSS
T ss_pred cchhhccChHHHHHHHHHHHHHHH-------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhccc
Confidence 347899999999988776654331 23445789999999999999999999999975 788888776544433
Q ss_pred ch-------------------------------------------------hHHHHHHHHHHHhc-----c----CCeEE
Q 002169 371 GE-------------------------------------------------SEQALHEVFDSASQ-----S----APAVV 392 (957)
Q Consensus 371 ge-------------------------------------------------~e~~i~~vf~~a~~-----~----~p~IL 392 (957)
+. ....++..|+.+.. . .|+||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl 193 (368)
T 3uk6_A 114 SKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVL 193 (368)
T ss_dssp CHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEE
T ss_pred chhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceE
Confidence 22 23344555544332 1 26799
Q ss_pred EEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec-----------CCCCCchhhhhCCCCcceeeeec
Q 002169 393 FIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT-----------NRPDSIEPALRRPGRLDREIEIA 461 (957)
Q Consensus 393 ~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt-----------N~~~~ld~al~r~gRfd~~I~i~ 461 (957)
||||+|.+. ....+.|+..++.. ...++++++. |.+..+++++++ ||.. +.++
T Consensus 194 ~IDEi~~l~-----------~~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~ 257 (368)
T 3uk6_A 194 FIDEVHMLD-----------IESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTT 257 (368)
T ss_dssp EEESGGGSB-----------HHHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEEC
T ss_pred EEhhccccC-----------hHHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEec
Confidence 999999884 24456677777653 2234444443 347789999999 9866 8999
Q ss_pred CCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 462 VPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 462 ~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
.|+.+++.+|++..+......+++..++.++..+.+.+.+++..+++.|...|..+...
T Consensus 258 ~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~ 316 (368)
T 3uk6_A 258 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGT 316 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999888778889999999999998778899999999999888765443
No 77
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.72 E-value=1.5e-17 Score=198.02 Aligned_cols=200 Identities=23% Similarity=0.260 Sum_probs=139.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc--------
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-------- 367 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-------- 367 (957)
+++.|++++++.+.+.+...... +.+ ++.+++|+|||||||||+|+++|+.++.++..+++..+..
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~-----~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLT-----KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHS-----SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhc-----ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHH
Confidence 46899999999998877655332 222 6789999999999999999999999999999998876543
Q ss_pred -cccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc-------------CCCeE
Q 002169 368 -QNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR-------------TDGVL 433 (957)
Q Consensus 368 -~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~-------------~~~v~ 433 (957)
.++|.....+...|..+....| |+||||+|.+.+.+.. .....|+..|+.... ..+++
T Consensus 155 ~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~ 226 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 226 (543)
T ss_dssp ---------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred HHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence 4567777777788887766655 9999999999765422 134557777765321 15689
Q ss_pred EEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC-----C-----CCCCChHHHHHHHHHcCC-CcHHH
Q 002169 434 VIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG-----M-----EHSLLDSEVEYLSMATHG-FVGAD 502 (957)
Q Consensus 434 vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~-----~-----~~~l~~~~l~~La~~t~g-~~gaD 502 (957)
||+|||+++.+++++++ ||+ .|.++.|+.+++.+|++.++.. . ...+++..+..++....+ ...++
T Consensus 227 iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~ 303 (543)
T 3m6a_A 227 FIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRS 303 (543)
T ss_dssp EEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHH
T ss_pred EEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhH
Confidence 99999999999999999 995 6999999999999999987622 1 334578888888775443 34455
Q ss_pred HHHHHHHHHH
Q 002169 503 LAALCNEAAL 512 (957)
Q Consensus 503 i~~l~~~A~~ 512 (957)
+++.+..+..
T Consensus 304 L~~~i~~~~~ 313 (543)
T 3m6a_A 304 LERQLAAICR 313 (543)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444333
No 78
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.71 E-value=7e-17 Score=177.65 Aligned_cols=217 Identities=24% Similarity=0.349 Sum_probs=159.1
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhh-hc-CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cccch-
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLS-SL-GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYGE- 372 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~-~l-~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~~ge- 372 (957)
.+.|.+.+++.+...+..+.....+. .+ .-..+.++||+||||||||++|+++|+.++.+++.+++.++.. .+.|.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 58999999999998876543221110 00 1135679999999999999999999999999999999998876 45553
Q ss_pred hHHHHHHHHHHHh-----ccCCeEEEEcCccccccCCcCCCch-HHHHHHHHHHHHhhccc--------cCCCeEEEEe-
Q 002169 373 SEQALHEVFDSAS-----QSAPAVVFIDELDAIAPARKDGGEE-LSQRMVATLLNLMDGVC--------RTDGVLVIAA- 437 (957)
Q Consensus 373 ~e~~i~~vf~~a~-----~~~p~IL~IDEiD~l~~~~~~~~~~-~~~~i~~~Ll~~ld~l~--------~~~~v~vI~t- 437 (957)
....++.+++.+. ...++||||||+|.+.+.....+.+ ....+...|+..|++.. ...++++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 2345666666431 1236799999999998776543333 33345778888888641 2357888888
Q ss_pred ---cCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHH----H-------H--cCCCCCCChHHHHHHHHHcC-----
Q 002169 438 ---TNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHA----L-------L--SGMEHSLLDSEVEYLSMATH----- 496 (957)
Q Consensus 438 ---tN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~----~-------l--~~~~~~l~~~~l~~La~~t~----- 496 (957)
++.+..+++++++ ||+..+.|+.|+.+++.+|++. + + ......+++..++.++..+.
T Consensus 176 ~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 253 (310)
T 1ofh_A 176 AFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK 253 (310)
T ss_dssp CCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHH
T ss_pred CcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccc
Confidence 4567889999998 9998899999999999999983 1 1 22334578889999988763
Q ss_pred --CCcHHHHHHHHHHHHHHHH
Q 002169 497 --GFVGADLAALCNEAALVCL 515 (957)
Q Consensus 497 --g~~gaDi~~l~~~A~~~a~ 515 (957)
+...+.+..+++.+...+.
T Consensus 254 ~~~g~~R~l~~~l~~~~~~~~ 274 (310)
T 1ofh_A 254 TENIGARRLHTVMERLMDKIS 274 (310)
T ss_dssp SCCCTTHHHHHHHHHHSHHHH
T ss_pred ccccCcHHHHHHHHHHHHhhh
Confidence 5678888888888765544
No 79
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.71 E-value=1.1e-16 Score=181.22 Aligned_cols=221 Identities=19% Similarity=0.295 Sum_probs=161.5
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhh--hhcC-CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc-ccch
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTL--SSLG-LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ-NYGE 372 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~--~~l~-i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~-~~ge 372 (957)
.|.|++..++.+...+......... .... ..++.++||+||||||||++|+++|..++.+|+.+++.++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3799999999999988654333111 0011 1367899999999999999999999999999999999988754 6776
Q ss_pred h-HHHHHHHHHHH----hccCCeEEEEcCccccccCCcCCC---chHHHHHHHHHHHHhhcc------------------
Q 002169 373 S-EQALHEVFDSA----SQSAPAVVFIDELDAIAPARKDGG---EELSQRMVATLLNLMDGV------------------ 426 (957)
Q Consensus 373 ~-e~~i~~vf~~a----~~~~p~IL~IDEiD~l~~~~~~~~---~~~~~~i~~~Ll~~ld~l------------------ 426 (957)
. ...++.+|+.+ ....++||||||+|.+.+.+.... .....++.+.|+..|++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55677777765 334578999999999988765432 223345889999999842
Q ss_pred -ccCCCeEEEEecCCC----------CC-----------------------------------chhhhhCCCCcceeeee
Q 002169 427 -CRTDGVLVIAATNRP----------DS-----------------------------------IEPALRRPGRLDREIEI 460 (957)
Q Consensus 427 -~~~~~v~vI~ttN~~----------~~-----------------------------------ld~al~r~gRfd~~I~i 460 (957)
-...++++|+++|.. .. +.|+|.+ ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 122344555555532 11 5677777 99999999
Q ss_pred cCCCHHHHHHHHHH----HH-------c--CCCCCCChHHHHHHHHH--cCCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 461 AVPSPAQRLEILHA----LL-------S--GMEHSLLDSEVEYLSMA--THGFVGADLAALCNEAALVCLRRYS 519 (957)
Q Consensus 461 ~~P~~~~r~~Il~~----~l-------~--~~~~~l~~~~l~~La~~--t~g~~gaDi~~l~~~A~~~a~rr~~ 519 (957)
.+|+.+++.+|+.. ++ . .....+++..++.|+.. ...+..++|+++++.+...++.+..
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~ 327 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLP 327 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcc
Confidence 99999999999875 22 1 23345688889999874 4566678999999999888876653
No 80
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.70 E-value=8.6e-16 Score=159.23 Aligned_cols=203 Identities=21% Similarity=0.213 Sum_probs=151.0
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~ 713 (957)
..++..|++++|.+++++.+.+++.. ....+++|+||||||||++|+++++.+ ...++.+++
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 35667899999999999999888753 123359999999999999999999875 456888887
Q ss_pred CCcccccccchHHHHHHHHHHHH------hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKAR------ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~------~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
..... ...++..+.... ...+.+|+|||+|.+.. ...+.|+..++.. ..++.+
T Consensus 77 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-------------~~~~~l~~~l~~~--~~~~~~ 135 (226)
T 2chg_A 77 SDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-------------DAQAALRRTMEMY--SKSCRF 135 (226)
T ss_dssp TCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-------------HHHHHHHHHHHHT--TTTEEE
T ss_pred ccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-------------HHHHHHHHHHHhc--CCCCeE
Confidence 65432 122333333322 25678999999997632 3345566666643 346888
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++||.++.+++++.+ ||. .+.+++|+.++..++++..+.+.+.. .+..+..+++.+.| +.+.+.++++.++..+
T Consensus 136 i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 136 ILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG 211 (226)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred EEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 9999999999999999 887 89999999999999999888765543 23456778888877 6777777777666443
Q ss_pred HHHhcCCCCCCHHHHHHHHH
Q 002169 867 IEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~ 886 (957)
..|+.+|++.++.
T Consensus 212 -------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -------EVVDADTIYQITA 224 (226)
T ss_dssp -------SCBCHHHHHHHHH
T ss_pred -------ceecHHHHHHHhc
Confidence 5799999998875
No 81
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.70 E-value=6.4e-16 Score=172.84 Aligned_cols=194 Identities=17% Similarity=0.210 Sum_probs=151.8
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccch
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge 372 (957)
.+|+++.|.+..++.+..++...... -.+..++||+||||||||++|+++|+.++.+++.++|..+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------ 92 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------ 92 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------
Confidence 46789999999999999987655221 23567899999999999999999999999999999987653
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc----------------cCCCeEEEE
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVIA 436 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~----------------~~~~v~vI~ 436 (957)
....+...+.. ...+++|||||+|.+. ......|+..|+... ...++++|+
T Consensus 93 ~~~~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 93 KSGDLAAILTN--LSEGDILFIDEIHRLS-----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp SHHHHHHHHHT--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred chhHHHHHHHh--ccCCCEEEEechhhcC-----------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 12233344433 2457899999999884 234556777776531 012489999
Q ss_pred ecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 002169 437 ATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 515 (957)
Q Consensus 437 ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~ 515 (957)
+||+...+++++++ ||+..+.++.|+.+++.++++..+......+++..++.++....|. .+.+..+++.+...+.
T Consensus 160 atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~~~a~ 235 (338)
T 3pfi_A 160 ATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRST-PRIALRLLKRVRDFAD 235 (338)
T ss_dssp EESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC-HHHHHHHHHHHHHHHH
T ss_pred eCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999998888778899999999966664 5777777777655443
No 82
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.69 E-value=2.2e-16 Score=171.42 Aligned_cols=205 Identities=21% Similarity=0.243 Sum_probs=142.1
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc-cccchhHH
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS-QNYGESEQ 375 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~-~~~ge~e~ 375 (957)
.+.|..+..+.+.+..... ...+...+..++.++||+||||||||++|+++|..++.+++.+++++... ...+....
T Consensus 34 ~~i~~~~~~~~i~~~~~~l--~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~ 111 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELL--VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQ 111 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHH--HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHH--HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHH
Confidence 4667777666555531111 12223345567889999999999999999999999999999998875322 22233446
Q ss_pred HHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-cCCCeEEEEecCCCCCchh-hhhCCCC
Q 002169 376 ALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-RTDGVLVIAATNRPDSIEP-ALRRPGR 453 (957)
Q Consensus 376 ~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-~~~~v~vI~ttN~~~~ld~-al~r~gR 453 (957)
.++.+|+.+....+++|||||+|.+++.+..+ ......++..|...++... ...++++|++||.++.+++ .+++ |
T Consensus 112 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--r 188 (272)
T 1d2n_A 112 AMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--A 188 (272)
T ss_dssp HHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--T
T ss_pred HHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--c
Confidence 78889998887788999999999997655322 2234566677777777653 2345789999999998888 5555 9
Q ss_pred cceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCC----cHHHHHHHHHHH
Q 002169 454 LDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF----VGADLAALCNEA 510 (957)
Q Consensus 454 fd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~----~gaDi~~l~~~A 510 (957)
|+..|.++.++. |.+|.+.+... ..+++..+..++..+.|| ..+++.++++.|
T Consensus 189 f~~~i~~p~l~~--r~~i~~i~~~~--~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 189 FSTTIHVPNIAT--GEQLLEALELL--GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp SSEEEECCCEEE--HHHHHHHHHHH--TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred cceEEcCCCccH--HHHHHHHHHhc--CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 988887765554 33333333222 234788899999999997 455666666554
No 83
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.69 E-value=1.2e-15 Score=172.53 Aligned_cols=225 Identities=19% Similarity=0.195 Sum_probs=160.0
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---------CCcEEEEeC
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKG 713 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---------~~~~i~v~~ 713 (957)
...++++|.++..+.+.+++.... ....+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 344889999999999888774321 12456789999999999999999999988 788999998
Q ss_pred CCcccc----------------cccchHHH-HHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHH
Q 002169 714 PELFSK----------------WVGESEKA-VRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE 775 (957)
Q Consensus 714 ~~l~~~----------------~vg~~~~~-ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ 775 (957)
....+. ..|..... ...++..... ..|+||||||+|.+...+ ....++..++..
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~ 158 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRI 158 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhc
Confidence 764321 11222223 3444444433 348899999999886431 123444555555
Q ss_pred HhccccCCcEEEEEecCCC---CCCChhhhCCCCcce-ecccCCCCHHHHHHHHHHHHhc--CC-CCCcccHHHHHHHcc
Q 002169 776 LDGLHQRVNVTVIAATNRP---DKIDPALLRPGRFDR-LLYVGPPNETDREEIFRIHLRK--IP-CSSDVNIRELACLSE 848 (957)
Q Consensus 776 ld~~~~~~~v~VI~aTN~~---~~id~aLlr~gRfd~-~i~~~~P~~~er~~Il~~~l~~--~~-~~~~~~l~~la~~t~ 848 (957)
++......++.+|++||.+ +.+++++.+ ||.. .+.+++|+.+++.+|++..+.. .+ ...+..+..+++.+.
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHH
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 5433214578999999988 678999998 8875 8999999999999999988864 11 123345677888887
Q ss_pred ---CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 849 ---GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 849 ---g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
| +.+.+.++|+.|+..|..+. ...|+.+|+..++....
T Consensus 237 ~~~G-~~r~~~~~l~~a~~~a~~~~--~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 237 REHG-DARRALDLLRVAGEIAERRR--EERVRREHVYSARAEIE 277 (387)
T ss_dssp SSSC-CHHHHHHHHHHHHHHHHHTT--CSCBCHHHHHHHHHHHH
T ss_pred Hhcc-CHHHHHHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHh
Confidence 7 67888999999988776543 56799999999987653
No 84
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.68 E-value=3.3e-16 Score=181.90 Aligned_cols=221 Identities=16% Similarity=0.268 Sum_probs=153.0
Q ss_pred CCccccccC-ChHH--HHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEe
Q 002169 641 PKVKWEDVG-GQRE--VKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVK 712 (957)
Q Consensus 641 p~v~~~di~-G~~~--vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~ 712 (957)
|..+|++++ |... +...+......+ + . +.+++||||||||||++|++|++++ +.+++.++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHP----------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHST----------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 456888876 5433 333443333321 1 2 5689999999999999999999988 78899998
Q ss_pred CCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecC
Q 002169 713 GPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN 792 (957)
Q Consensus 713 ~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN 792 (957)
+.++...+.+.........|.......++||||||+|.+.+. ......++..++.+...+..+||++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~-----------~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK-----------TGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC-----------HHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC-----------hHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 877654433322221122344444436889999999988532 123345555555544443444444444
Q ss_pred CCCC---CChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 793 RPDK---IDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 793 ~~~~---id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
.+.. +++++++ ||. .++.+++|+.++|.+|++..+...++. .+..+..++..+.| +.+++.++++.+...|
T Consensus 237 ~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 237 EPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp CGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 4443 7899999 886 789999999999999999988754433 23347888988887 8999999999998877
Q ss_pred HHHhcCCCCCCHHHHHHHHHhhCC
Q 002169 867 IEENLDASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~~p 890 (957)
... ...|+.+++++++....+
T Consensus 314 ~~~---~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 314 ETT---GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HHS---SSCCCHHHHHHHTSTTTC
T ss_pred HHh---CCCCCHHHHHHHHHHHhh
Confidence 654 346999999999988763
No 85
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.68 E-value=3.3e-16 Score=174.15 Aligned_cols=203 Identities=16% Similarity=0.157 Sum_probs=141.9
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS 718 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~ 718 (957)
...+.+|++++|++++++.+.+++.. ...+..+|++||||||||++|+++|++++.+++.+++++..
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~- 85 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK- 85 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-
Confidence 44567899999999999999888752 23456688899999999999999999999999999987642
Q ss_pred ccccchHHHHHHHHHHHHhC-----CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 719 KWVGESEKAVRSLFAKARAN-----APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~-----~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
...++..+..+... .+.||||||+|.+.. ....+.|+..++.. ..++.+|++||+
T Consensus 86 ------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~------------~~~~~~L~~~le~~--~~~~~iI~~~n~ 145 (324)
T 3u61_B 86 ------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL------------AESQRHLRSFMEAY--SSNCSIIITANN 145 (324)
T ss_dssp ------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG------------HHHHHHHHHHHHHH--GGGCEEEEEESS
T ss_pred ------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc------------HHHHHHHHHHHHhC--CCCcEEEEEeCC
Confidence 34555555543332 568999999998741 33456777777754 346789999999
Q ss_pred CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHH-------hcCCCC-Cc-ccHHHHHHHccCCcHHHHHHHHHHHHH
Q 002169 794 PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHL-------RKIPCS-SD-VNIRELACLSEGCTGADISLICREAAI 864 (957)
Q Consensus 794 ~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l-------~~~~~~-~~-~~l~~la~~t~g~sg~dl~~l~~eA~~ 864 (957)
+..+++++++ ||. ++.|++|+.+++.+|++.+. .+.++. .+ ..+..+++.+.| +.+++.+.++.++
T Consensus 146 ~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~- 220 (324)
T 3u61_B 146 IDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSYS- 220 (324)
T ss_dssp GGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG-
T ss_pred ccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh-
Confidence 9999999999 984 79999999998766654433 223333 23 457778888777 4555555555444
Q ss_pred HHHHHhcCCCCCCHHHHHHHHH
Q 002169 865 SAIEENLDASRITMQHLKTAIR 886 (957)
Q Consensus 865 ~a~~~~~~~~~It~~d~~~al~ 886 (957)
. ...|+.+++..++.
T Consensus 221 ----~---~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 221 ----S---KGVLDAGILSLVTN 235 (324)
T ss_dssp ----G---GTCBCC--------
T ss_pred ----c---cCCCCHHHHHHHhC
Confidence 1 23466666655443
No 86
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.67 E-value=7.3e-16 Score=208.04 Aligned_cols=356 Identities=14% Similarity=0.169 Sum_probs=188.5
Q ss_pred CCCCeEEEEcCCCChHHHHH-HHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHh---------------ccCCe
Q 002169 327 RPTKGVLLHGPPGTGKTSLA-RLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSAS---------------QSAPA 390 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLa-ralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~---------------~~~p~ 390 (957)
..++++||+||||||||++| ++++...+..++.++++...+. ..+...++... ...++
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~ 1338 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNL 1338 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCE
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceE
Confidence 34689999999999999999 5555555677888887665432 23444444321 12357
Q ss_pred EEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc--------CCCeEEEEecCCCC-----CchhhhhCCCCccee
Q 002169 391 VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR--------TDGVLVIAATNRPD-----SIEPALRRPGRLDRE 457 (957)
Q Consensus 391 IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~--------~~~v~vI~ttN~~~-----~ld~al~r~gRfd~~ 457 (957)
||||||++.....+ .+.+....++.++++. .++.. -.++.+|+|||++. .+++++.| || ..
T Consensus 1339 VlFiDEinmp~~d~--yg~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~v 1412 (2695)
T 4akg_A 1339 VLFCDEINLPKLDK--YGSQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AI 1412 (2695)
T ss_dssp EEEEETTTCSCCCS--SSCCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EE
T ss_pred EEEecccccccccc--cCchhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eE
Confidence 99999998744333 3344444555554431 12211 13589999999994 89999999 88 66
Q ss_pred eeecCCCHHHHHHHHHHHHcCCCCCCChH--HHHH-----------HHH-------HcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 458 IEIAVPSPAQRLEILHALLSGMEHSLLDS--EVEY-----------LSM-------ATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 458 I~i~~P~~~~r~~Il~~~l~~~~~~l~~~--~l~~-----------La~-------~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+.++.|+.+++..|++.+++.+-...++. ..+. +.. ...-|+.+|+..+++.........
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~~~~ 1492 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTG 1492 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHHHTS
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcCchh
Confidence 99999999999999998876432110110 0111 111 124588999999887644321110
Q ss_pred hccc--cccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcc
Q 002169 518 YSKI--QTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFH 595 (957)
Q Consensus 518 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (957)
.... .-...+.|++.++| .|..++.-| . .+ ....+.+......
T Consensus 1493 ~~~~~~~l~rLw~HE~~Rvf-------------------~DRLv~~~D-------------~-~~--f~~~l~~~~~~~f 1537 (2695)
T 4akg_A 1493 PRQTLRSLIRLWAYEAWRIF-------------------ADRLVGVKE-------------K-NS--FEQLLYETVDKYL 1537 (2695)
T ss_dssp SCCCHHHHHHHHHHHHHHHH-------------------TTTCCSSHH-------------H-HH--HHHHHHHHHHHHS
T ss_pred hhccHHHHHHHHHHHHHHHH-------------------HHhcCCHHH-------------H-HH--HHHHHHHHHHHHh
Confidence 0000 00123455555554 111110000 0 00 0011111111100
Q ss_pred cCCC-C--CCCCCcccccc--ccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHH
Q 002169 596 NGVS-D--SSGGMFMSEKG--CALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQE 670 (957)
Q Consensus 596 ~~~~-~--~~~~~~~~e~~--~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~ 670 (957)
.... + ..+..+..+.. ....++.+++...+. ..+.+...+.. . -+++--+++.+ |--
T Consensus 1538 ~~~~~~~~~~~~~~f~df~~~~Y~~v~~~~l~~~l~----~~l~~yn~~~~--~-m~LVlF~dai~-----------Hi~ 1599 (2695)
T 4akg_A 1538 PNQDLGNISSTSLLFSGLLSLDFKEVNKTDLVNFIE----ERFKTFCDEEL--E-VPMVIHESMVD-----------HIL 1599 (2695)
T ss_dssp CCSCCCCCSTTTCCEESSSSSSCEECCHHHHHHHHH----HHHHHHHHHSC--C-CCCCCCHHHHH-----------HHH
T ss_pred cccchhhhccCCceeeecCCCcceecCHHHHHHHHH----HHHHHHHhhcC--C-ceeeeHHHHHH-----------HHH
Confidence 0000 0 00000000000 000111111111111 01111100000 0 01222222222 222
Q ss_pred HHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHH-hCCCeEEEEeCCc
Q 002169 671 AFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKAR-ANAPSIIFFDEID 749 (957)
Q Consensus 671 ~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~-~~~p~ILfiDEid 749 (957)
.+.++-..|..++||+|++|+||++++|..|...+..++.+....-++ ..+....++.++.+|- .+.|.+++|+|.+
T Consensus 1600 RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1677 (2695)
T 4akg_A 1600 RIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHSN--LSDFDMILKKAISDCSLKESRTCLIIDESN 1677 (2695)
T ss_dssp HHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTCC--HHHHHHHHHHHHHHHHHSCCCEEEEEETTT
T ss_pred HHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCCC--HHHHHHHHHHHHHHcCCCCCceEEEEeccc
Confidence 223333456678999999999999999999999999999888665433 3456788899998884 5667788888843
No 87
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.67 E-value=4.3e-16 Score=177.17 Aligned_cols=239 Identities=21% Similarity=0.243 Sum_probs=152.9
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHH-----------------hcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcE
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFK-----------------RIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNF 708 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~-----------------~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~ 708 (957)
++|+|++++|+.+..++...+....... .-...++.+++|+||||||||++|+++|+.++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4689999999999988854333322210 11234567899999999999999999999999999
Q ss_pred EEEeCCCcc-cccccch-HHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCC-CCcchHHHHHHHHHHHhccc-
Q 002169 709 LAVKGPELF-SKWVGES-EKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESD-GVSVSDRVMSQLLVELDGLH- 780 (957)
Q Consensus 709 i~v~~~~l~-~~~vg~~-~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~-~~~~~~~v~~~LL~~ld~~~- 780 (957)
+.+++..+. ..|.|.. ...+..++..+. ...++||||||+|.+...+..... .......+++.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999988775 3466654 344555555432 235679999999998765422111 11122458889999998541
Q ss_pred ------------------cCCcEEEEEecCCC-----------------------------------------CCCChhh
Q 002169 781 ------------------QRVNVTVIAATNRP-----------------------------------------DKIDPAL 801 (957)
Q Consensus 781 ------------------~~~~v~VI~aTN~~-----------------------------------------~~id~aL 801 (957)
...++++|++||.. ..+.|++
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12456778877621 1246777
Q ss_pred hCCCCcceecccCCCCHHHHHHHHHH----HHh-------cCCCC---CcccHHHHHHHcc--CCcHHHHHHHHHHHHHH
Q 002169 802 LRPGRFDRLLYVGPPNETDREEIFRI----HLR-------KIPCS---SDVNIRELACLSE--GCTGADISLICREAAIS 865 (957)
Q Consensus 802 lr~gRfd~~i~~~~P~~~er~~Il~~----~l~-------~~~~~---~~~~l~~la~~t~--g~sg~dl~~l~~eA~~~ 865 (957)
++ ||+.++.|++++.++..+|++. ++. ..+.. .+..+..++.... ..+.|+++++++.++..
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 77 9988999999999999988862 111 11111 2233566666543 34789999999999988
Q ss_pred HHHHhcC----CCCCCHHHHHHHHH
Q 002169 866 AIEENLD----ASRITMQHLKTAIR 886 (957)
Q Consensus 866 a~~~~~~----~~~It~~d~~~al~ 886 (957)
++.+... ...|+.+++..+.+
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HHhhccCCCCCEEEEeHHHhcCCCC
Confidence 8776432 22588888876543
No 88
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.67 E-value=9.3e-16 Score=171.88 Aligned_cols=232 Identities=21% Similarity=0.249 Sum_probs=141.7
Q ss_pred HHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh
Q 002169 625 RMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 625 ~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
+..+.|++... ...+..+|++++|++++++.+...... ....++||+||||||||++|+++|+.+
T Consensus 5 ~~~~~~~~~~~--~~~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 5 VARLQPSASGA--KTRPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp ---------------CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred ccccCCcccCC--CCCCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhC
Confidence 33444444433 344678999999999988765443321 123469999999999999999999988
Q ss_pred CC-------c--------------------------EEEEeCCCcccccccchHHHHHHHHHHH---------HhCCCeE
Q 002169 705 GL-------N--------------------------FLAVKGPELFSKWVGESEKAVRSLFAKA---------RANAPSI 742 (957)
Q Consensus 705 ~~-------~--------------------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A---------~~~~p~I 742 (957)
+. + ++.+..........|... +...+..+ ....++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~v 147 (350)
T 1g8p_A 70 PEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGY 147 (350)
T ss_dssp CCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEE
T ss_pred ccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCE
Confidence 63 1 222111110001111100 01111111 0113569
Q ss_pred EEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-----------cCCcEEEEEecCCCC-CCChhhhCCCCccee
Q 002169 743 IFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVTVIAATNRPD-KIDPALLRPGRFDRL 810 (957)
Q Consensus 743 LfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~VI~aTN~~~-~id~aLlr~gRfd~~ 810 (957)
|||||+|.+. ...++.|+..|+... ...++++|++||..+ .++++|++ ||+..
T Consensus 148 l~iDEi~~l~-------------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~ 212 (350)
T 1g8p_A 148 LYIDECNLLE-------------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLS 212 (350)
T ss_dssp EEETTGGGSC-------------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEE
T ss_pred EEEeChhhCC-------------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceE
Confidence 9999999763 345667777776421 113788999999754 79999999 99988
Q ss_pred cccCCC-CHHHHHHHHHHHHh-------------------------------cCCCCCcccHHHHHHHccCC---cHHHH
Q 002169 811 LYVGPP-NETDREEIFRIHLR-------------------------------KIPCSSDVNIRELACLSEGC---TGADI 855 (957)
Q Consensus 811 i~~~~P-~~~er~~Il~~~l~-------------------------------~~~~~~~~~l~~la~~t~g~---sg~dl 855 (957)
+.+++| +.+++.+|++..+. ...+ .+..+..++....+. +.|.+
T Consensus 213 ~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s~~~~~~l~~~~~~~~~~~~R~~ 291 (350)
T 1g8p_A 213 VEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-PNTALYDCAALCIALGSDGLRGE 291 (350)
T ss_dssp EECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-CHHHHHHHHHHHHHSSSCSHHHH
T ss_pred EEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHH
Confidence 999988 56677788765311 1122 223345555554432 56999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 856 SLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 856 ~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
.++++.|...|..+. ...|+.+|+.+++..+..+
T Consensus 292 ~~ll~~a~~~A~~~~--~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 292 LTLLRSARALAALEG--ATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp HHHHHHHHHHHHHTT--CSBCCHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcC--CCcCCHHHHHHHHHHHHhh
Confidence 999999888887654 4579999999998876544
No 89
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.67 E-value=7.8e-16 Score=171.34 Aligned_cols=218 Identities=17% Similarity=0.238 Sum_probs=148.5
Q ss_pred CCccccccC-Ch--HHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCC
Q 002169 641 PKVKWEDVG-GQ--REVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGP 714 (957)
Q Consensus 641 p~v~~~di~-G~--~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~ 714 (957)
|..+|++++ |. ..+...+...+.++ ...+.+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 556788886 43 44455555544432 1245789999999999999999999988 8999999987
Q ss_pred CcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 715 ELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 715 ~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
++...+.+.........|..... .+++|||||+|.+... ......++..++........+|+++++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~-----------~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGK-----------ERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTC-----------HHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCC-----------hHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 77554444332222233333332 3779999999987532 12333455555544444456666677666
Q ss_pred C---CCChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHH---
Q 002169 795 D---KIDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAIS--- 865 (957)
Q Consensus 795 ~---~id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~--- 865 (957)
. .+++++.+ ||. ..+.+++ +.+++.+|++.++...++. .+..+..++..+ | +.+++.++++.++..
T Consensus 143 ~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~~~ 217 (324)
T 1l8q_A 143 QKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKGFE 217 (324)
T ss_dssp GGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHCHH
T ss_pred HHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcCHH
Confidence 5 68999998 886 6789999 9999999999999866543 233477888888 6 789999999887765
Q ss_pred HHHHhcCCCCC-CHHHHHHHHHh
Q 002169 866 AIEENLDASRI-TMQHLKTAIRH 887 (957)
Q Consensus 866 a~~~~~~~~~I-t~~d~~~al~~ 887 (957)
++. ......| +.+++.+++..
T Consensus 218 ~l~-~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 218 GLE-RKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHH
T ss_pred Hhc-cccccCCCCHHHHHHHHHH
Confidence 111 0012347 77888887765
No 90
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.66 E-value=3.2e-16 Score=183.49 Aligned_cols=208 Identities=21% Similarity=0.280 Sum_probs=145.9
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEE
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFL 709 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i 709 (957)
....++++++|+++.++.+.+.+.. ....++||+||||||||++|+++|..+ +.+++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 3456789999999999988877642 345679999999999999999999986 77888
Q ss_pred EEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEE
Q 002169 710 AVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789 (957)
Q Consensus 710 ~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~ 789 (957)
.+++. .+|.|+++..++.+|..+....+.||||| . . ..+.+.|+..| ..+.+++|+
T Consensus 241 ~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--~-------~--------~~a~~~L~~~L----~~g~v~vI~ 296 (468)
T 3pxg_A 241 TLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------A--------IDASNILKPSL----ARGELQCIG 296 (468)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC--C-----------------------CCCT----TSSSCEEEE
T ss_pred EeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe--C-------c--------hhHHHHHHHhh----cCCCEEEEe
Confidence 88877 77889889999999999998889999999 0 0 01222333333 355899999
Q ss_pred ecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC----CC-CcccHHHHHHHccCCc-----HHH
Q 002169 790 ATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP----CS-SDVNIRELACLSEGCT-----GAD 854 (957)
Q Consensus 790 aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~----~~-~~~~l~~la~~t~g~s-----g~d 854 (957)
+||.++ .+|+++.| ||. .|.|+.|+.+++..|++.++.++. .. .+..+..++..+.+|. .++
T Consensus 297 at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ 373 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDK 373 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHH
T ss_pred cCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcH
Confidence 999998 68999999 997 699999999999999998887632 22 2334566666665554 558
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 855 ISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 855 l~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
...++.+|+..+..+.. ..+-....+++.+..+
T Consensus 374 ai~ll~~a~~~~~~~~~-~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 374 AIDLIDEAGSKVRLRSF-TTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHHHHHHTT-SCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCchHHHHHHHHHHHH
Confidence 88999988876655442 2333445555554443
No 91
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.66 E-value=3e-15 Score=156.95 Aligned_cols=203 Identities=20% Similarity=0.251 Sum_probs=150.1
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCc------------
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLN------------ 707 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~------------ 707 (957)
..+..|++++|.+++++.+.+.+.. ...+..++|+||||||||++|+++++.++..
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSL------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHH------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4556789999999999999888753 1234569999999999999999999887432
Q ss_pred ------------EEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHH
Q 002169 708 ------------FLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQ 771 (957)
Q Consensus 708 ------------~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~ 771 (957)
++.+.... ......++.++..+. ...+.+|+|||+|.+ ....++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-------------~~~~~~~ 145 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-------------SRHSFNA 145 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-------------CHHHHHH
T ss_pred HHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-------------cHHHHHH
Confidence 22222211 112334555555543 235789999999976 2345667
Q ss_pred HHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCC
Q 002169 772 LLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGC 850 (957)
Q Consensus 772 LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~ 850 (957)
|+..++.. ..++.+|++||.+..+++++.+ |+ ..+.+++++.++..++++.++.+.+.. .+..+..+++.+.|
T Consensus 146 l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G- 219 (250)
T 1njg_A 146 LLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG- 219 (250)
T ss_dssp HHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-
T ss_pred HHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-
Confidence 77777743 4478899999999999999998 76 689999999999999999988765543 23457788899988
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 851 TGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 851 sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
+.+.+.++++.|+..+ ...|+.+++++++
T Consensus 220 ~~~~~~~~~~~~~~~~------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 220 SLRDALSLTDQAIASG------DGQVSTQAVSAML 248 (250)
T ss_dssp CHHHHHHHHHHHHTTT------TSSBCHHHHHHHS
T ss_pred CHHHHHHHHHHHHhcc------CceecHHHHHHHh
Confidence 8899999998875332 3479999998875
No 92
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.65 E-value=7.8e-16 Score=199.74 Aligned_cols=150 Identities=20% Similarity=0.248 Sum_probs=110.7
Q ss_pred ccccccccCCcHHHHHHHHHHHHhhhhh-----------hhhhh------c------------CCCCCCeEEEEcCCCCh
Q 002169 291 VEQDISKLGGLSKEYAILKDIIISSSVK-----------STLSS------L------------GLRPTKGVLLHGPPGTG 341 (957)
Q Consensus 291 ~~~~~~~i~Gl~~~~~~l~e~i~~~~~~-----------~~~~~------l------------~i~~~~~vLL~GppGtG 341 (957)
...+|++++|+++.+..+.+.+.+++.+ +.++. . |++.++.+|||||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3468999999999999999999998733 23333 1 24456669999999999
Q ss_pred HHHHHHHHHHHc---CCcEEEEeccccc------------ccccch----hHHHHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 342 KTSLARLCAHDS---GVNLFTVNGPEVV------------SQNYGE----SEQALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 342 KTtLaralA~~l---~~~~i~i~~~~l~------------~~~~ge----~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
||+||++++.+. |.+.+.|+..+.. ++++++ +|+.++.+|..|+...|+++|+||+|+|++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999766 4455566655533 556677 899999999999999999999999999999
Q ss_pred CCc---CCC---chHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 403 ARK---DGG---EELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 403 ~~~---~~~---~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
.+. ..+ .....|++++++..|+++....+++|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 842 111 256778899999999998888888877 77764
No 93
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.65 E-value=3.1e-15 Score=165.86 Aligned_cols=190 Identities=21% Similarity=0.316 Sum_probs=146.1
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccch
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge 372 (957)
.+|+++.|.+..++.+.+.+...... -..+.+++|+||||||||++|+++++.++.+++.+++..+..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~----- 76 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK----- 76 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-----
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-----
Confidence 46788999999999999887554221 134678999999999999999999999999999999877632
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc----------------cCCCeEEEE
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVIA 436 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~----------------~~~~v~vI~ 436 (957)
...+...|..+ ...+.+|||||+|.+.. .....|+..++... ...++.+|+
T Consensus 77 -~~~l~~~l~~~-~~~~~~l~lDEi~~l~~-----------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 77 -PGDLAAILANS-LEEGDILFIDEIHRLSR-----------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp -HHHHHHHHTTT-CCTTCEEEETTTTSCCH-----------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred -hHHHHHHHHHh-ccCCCEEEEECCccccc-----------chHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 22223333321 23578999999998742 23345666666531 113578999
Q ss_pred ecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 437 ATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 437 ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
+||.+..+++++.+ ||+..+.++.|+.+++.++++.++...+..+++..++.++..+.|.. +.+..+++.+
T Consensus 144 ~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~ 214 (324)
T 1hqc_A 144 ATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTM-RVAKRLFRRV 214 (324)
T ss_dssp EESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCH-HHHHHHHHHH
T ss_pred eCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH-HHHHHHHHHH
Confidence 99999999999988 99888999999999999999999988888889999999999987654 6666666654
No 94
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.65 E-value=2.4e-15 Score=158.57 Aligned_cols=205 Identities=13% Similarity=0.105 Sum_probs=143.1
Q ss_pred CccccccCCh---HHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC---CcEEEEeCCC
Q 002169 642 KVKWEDVGGQ---REVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPE 715 (957)
Q Consensus 642 ~v~~~di~G~---~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~---~~~i~v~~~~ 715 (957)
..+|++++|. +.+.+.+..++.+ ..+.+++|+||||||||++|++++.++. .+++.+++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 4678888862 4556656555432 2457899999999999999999998764 6788888877
Q ss_pred cccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecC-CC
Q 002169 716 LFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATN-RP 794 (957)
Q Consensus 716 l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN-~~ 794 (957)
+...+.. .+.. ...+.+|||||++.+... ......++..++.......+.+|++|| .+
T Consensus 91 ~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~-----------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 91 HASISTA--------LLEG--LEQFDLICIDDVDAVAGH-----------PLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGGSCGG--------GGTT--GGGSSEEEEETGGGGTTC-----------HHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred HHHHHHH--------HHHh--ccCCCEEEEeccccccCC-----------HHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 6544211 1111 134679999999987421 112334555555443333443444444 44
Q ss_pred C---CCChhhhCCCCcc--eecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Q 002169 795 D---KIDPALLRPGRFD--RLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIE 868 (957)
Q Consensus 795 ~---~id~aLlr~gRfd--~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~ 868 (957)
. .+++++.+ ||. ..+.+++|+.+++.++++.++...+.. .+..+..+++.+.| +.+++.++++.+...|..
T Consensus 150 ~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 150 MEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp TTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 3 45688988 875 799999999999999999998766543 23446778888877 899999999999888865
Q ss_pred HhcCCCCCCHHHHHHHHH
Q 002169 869 ENLDASRITMQHLKTAIR 886 (957)
Q Consensus 869 ~~~~~~~It~~d~~~al~ 886 (957)
+. ..|+.++++++++
T Consensus 227 ~~---~~It~~~v~~~l~ 241 (242)
T 3bos_A 227 HQ---RKLTIPFVKEMLR 241 (242)
T ss_dssp HT---CCCCHHHHHHHHT
T ss_pred hC---CCCcHHHHHHHhh
Confidence 53 4699999998875
No 95
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.65 E-value=2.7e-14 Score=159.85 Aligned_cols=217 Identities=22% Similarity=0.269 Sum_probs=159.3
Q ss_pred cCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccc
Q 002169 640 VPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSK 719 (957)
Q Consensus 640 ~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~ 719 (957)
+...+|++++|++.+++.+...+..... .-.++.+++|+|||||||||+|++||++++.++...+++.+..
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~--------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKM--------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHH--------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-
Confidence 3445788999999998888776643211 1234577999999999999999999999999988777765432
Q ss_pred cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc----------------cCC
Q 002169 720 WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH----------------QRV 783 (957)
Q Consensus 720 ~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~----------------~~~ 783 (957)
...+..++.. ....+|+|+||+|.+.+ .+.+.++..++... ...
T Consensus 90 -----~~~l~~~~~~--~~~~~v~~iDE~~~l~~-------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 90 -----QGDMAAILTS--LERGDVLFIDEIHRLNK-------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp -----HHHHHHHHHH--CCTTCEEEEETGGGCCH-------------HHHHHHHHHHHTSCCCC---------------C
T ss_pred -----HHHHHHHHHH--ccCCCEEEEcchhhcCH-------------HHHHHHHHHHHhcccceeeccCcccccccccCC
Confidence 2233333332 23457999999998743 12233333333211 012
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
.+.++++|+++..+++++++ ||...+.+++|+.+++.+|++...+..+... +..+..++..+.| +.+++.++++.+
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 46778899999999999999 9988889999999999999999887666543 3346788888888 779999999998
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 002169 863 AISAIEENLDASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 863 ~~~a~~~~~~~~~It~~d~~~al~~~~p 890 (957)
...|..+. ...|+.+++++++.....
T Consensus 227 ~~~a~~~~--~~~It~~~v~~al~~~~~ 252 (334)
T 1in4_A 227 RDMLTVVK--ADRINTDIVLKTMEVLNI 252 (334)
T ss_dssp HHHHHHHT--CSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHcC--CCCcCHHHHHHHHHHhCC
Confidence 88877654 557999999999988764
No 96
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=9e-16 Score=181.89 Aligned_cols=226 Identities=16% Similarity=0.193 Sum_probs=145.0
Q ss_pred hcCCccccccCChHHHHHHHHHHHhc-hhhcHHHHHhcCCC---CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEW-PQKHQEAFKRIGTR---PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGP 714 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~-~~~~~~~~~~l~~~---~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~ 714 (957)
...+.+|++++|++++++.+.+++.. ....+..++..+.. +++++||+||||||||++|+++|++++.+++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 45667899999999999999998864 22222333333332 567899999999999999999999999999999998
Q ss_pred CcccccccchHH-------HHHHHHHHH-----HhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccC
Q 002169 715 ELFSKWVGESEK-------AVRSLFAKA-----RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQR 782 (957)
Q Consensus 715 ~l~~~~vg~~~~-------~ir~~f~~A-----~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~ 782 (957)
++...+.....- .++.+|..+ ....++||||||+|.+.... ...+..|+..++.. .
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~----------~~~l~~L~~~l~~~--~ 179 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD----------RGGVGQLAQFCRKT--S 179 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS----------TTHHHHHHHHHHHC--S
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh----------HHHHHHHHHHHHhc--C
Confidence 876543221110 022333333 23567899999999885421 11244566666532 2
Q ss_pred CcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHH
Q 002169 783 VNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICRE 861 (957)
Q Consensus 783 ~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~e 861 (957)
..+++|+++.....+ +.+.| +...+.|++|+.+++.++++..+.+.++. .+..+..+++.+.| +.+.+.++++.
T Consensus 180 ~~iIli~~~~~~~~l-~~l~~---r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-diR~~i~~L~~ 254 (516)
T 1sxj_A 180 TPLILICNERNLPKM-RPFDR---VCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIRQVINLLST 254 (516)
T ss_dssp SCEEEEESCTTSSTT-GGGTT---TSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-CHHHHHHHHTH
T ss_pred CCEEEEEcCCCCccc-hhhHh---ceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 233333333322333 34443 44689999999999999998877554332 23457888888877 44444444433
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 862 AAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 862 A~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
+ +. ....|+.+++..++...
T Consensus 255 ~---~~----~~~~It~~~v~~~~~~~ 274 (516)
T 1sxj_A 255 I---ST----TTKTINHENINEISKAW 274 (516)
T ss_dssp H---HH----HSSCCCTTHHHHHHHHH
T ss_pred H---Hh----cCCCCchHHHHHHHHhh
Confidence 2 22 13467878877776643
No 97
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=5.8e-15 Score=167.44 Aligned_cols=213 Identities=19% Similarity=0.234 Sum_probs=151.8
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-----------CCcEEEEeCC
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----------GLNFLAVKGP 714 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----------~~~~i~v~~~ 714 (957)
++++|.++.++.+.+.+.... ....+.+++|+||||||||++|+++++++ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV---------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH---------TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 789999999999988775321 12345689999999999999999999987 8899999865
Q ss_pred Ccc-cc-----------------cccch-HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHH
Q 002169 715 ELF-SK-----------------WVGES-EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE 775 (957)
Q Consensus 715 ~l~-~~-----------------~vg~~-~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ 775 (957)
... .. ..+.. ...+..++..+... +.||||||+|.+..... ..+ ++..
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~---------~~~---~l~~ 157 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG---------GDI---VLYQ 157 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT---------SHH---HHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC---------Cce---eHHH
Confidence 432 10 11221 22234444444444 34999999999864320 111 1222
Q ss_pred HhccccCCcEEEEEecCCC---CCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhc-C--CCCCcccHHHHHHHcc-
Q 002169 776 LDGLHQRVNVTVIAATNRP---DKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRK-I--PCSSDVNIRELACLSE- 848 (957)
Q Consensus 776 ld~~~~~~~v~VI~aTN~~---~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~-~--~~~~~~~l~~la~~t~- 848 (957)
+-... .++.+|++||.+ +.+++++.+ ||...+.+++|+.++..++++.++.. + ....+..+..+++.+.
T Consensus 158 l~~~~--~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 158 LLRSD--ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp HHTSS--SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred HhcCC--cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 22222 588999999987 678999998 88779999999999999999998863 1 1123345677888877
Q ss_pred --CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 849 --GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 849 --g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
| +.+.+.++|+.|+..|. ....|+.+|+..++....
T Consensus 234 ~~G-~~r~a~~~l~~a~~~a~----~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 234 EHG-DARKAVNLLFRAAQLAS----GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TCC-CHHHHHHHHHHHHHHTT----SSSCCCHHHHHHHHHHHH
T ss_pred ccC-CHHHHHHHHHHHHHHhc----CCCccCHHHHHHHHHHHh
Confidence 5 56778888888887764 356799999999987764
No 98
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.62 E-value=5.4e-15 Score=164.53 Aligned_cols=196 Identities=14% Similarity=0.264 Sum_probs=138.7
Q ss_pred ccccccC-C--cHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccc
Q 002169 293 QDISKLG-G--LSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVV 366 (957)
Q Consensus 293 ~~~~~i~-G--l~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~ 366 (957)
.+|+++. | .......++.++..+ -..+.+++|+||||||||++|+++++.+ +.+++.+++.++.
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCc----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 4566664 3 334444555554332 1246789999999999999999999988 8899999998876
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC---C
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD---S 443 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~---~ 443 (957)
..+.+.........|.... ..+++|||||+|.+..++ .....++..++.....+..+|+++++.+. .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 78 QAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence 5544433332222333322 247899999999985421 22344556665554455567777777766 6
Q ss_pred chhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 002169 444 IEPALRRPGRLD--REIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 444 ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
+++++++ ||. ..+++++ +.+++.+|++..+...+..+++..++.++..+ | ..+++..+++.+...
T Consensus 148 l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 148 VSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp SCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 7899998 886 5688998 99999999999998888888999999999998 4 567777777665443
No 99
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.62 E-value=3e-15 Score=167.07 Aligned_cols=212 Identities=19% Similarity=0.163 Sum_probs=147.1
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC------c
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE------L 716 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~------l 716 (957)
..+++++|++++++.+...+.. ..+++|+||||||||++|+++|+.++.+++.+++.. +
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 3467899999999888776642 358999999999999999999999999999988742 1
Q ss_pred ccccccchHHHHHHHHHHHHhCC---CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcc---------ccCCc
Q 002169 717 FSKWVGESEKAVRSLFAKARANA---PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGL---------HQRVN 784 (957)
Q Consensus 717 ~~~~vg~~~~~ir~~f~~A~~~~---p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~---------~~~~~ 784 (957)
.+........ ..+. .... .+||||||++.+ ....++.|+..|+.. ....+
T Consensus 89 ~g~~~~~~~~---~~~~--~~~g~l~~~vl~iDEi~~~-------------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~ 150 (331)
T 2r44_A 89 IGTMIYNQHK---GNFE--VKKGPVFSNFILADEVNRS-------------PAKVQSALLECMQEKQVTIGDTTYPLDNP 150 (331)
T ss_dssp HEEEEEETTT---TEEE--EEECTTCSSEEEEETGGGS-------------CHHHHHHHHHHHHHSEEEETTEEEECCSS
T ss_pred CCceeecCCC---CceE--eccCcccccEEEEEccccC-------------CHHHHHHHHHHHhcCceeeCCEEEECCCC
Confidence 1111100000 0000 0011 269999999965 345566777777642 12335
Q ss_pred EEEEEecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-----------------------C
Q 002169 785 VTVIAATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-----------------------S 836 (957)
Q Consensus 785 v~VI~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-----------------------~ 836 (957)
++||+++|..+ .+++++++ ||+..+.++.|+.+++.+|++.+....... .
T Consensus 151 ~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 228 (331)
T 2r44_A 151 FLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTIS 228 (331)
T ss_dssp CEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCC
T ss_pred EEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCC
Confidence 77888888543 38999999 998889999999999999999887653211 1
Q ss_pred cccHHHHHHHc-------------------cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 837 DVNIRELACLS-------------------EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 837 ~~~l~~la~~t-------------------~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
+..++.++... .|.+.|.+..+++.|...|..+. ...|+.+|+.+++..+..+
T Consensus 229 ~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g--~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 229 ESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNN--RDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTT--CSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHhHh
Confidence 11133333221 25689999999998887776654 5579999999999876554
No 100
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.62 E-value=2.8e-16 Score=159.00 Aligned_cols=160 Identities=24% Similarity=0.373 Sum_probs=118.0
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEE
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLA 710 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~ 710 (957)
....|++++|.++..+.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 456789999999998888777632 345679999999999999999999986 678888
Q ss_pred EeCCCcc--cccccchHHHHHHHHHHHH-hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 711 VKGPELF--SKWVGESEKAVRSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 711 v~~~~l~--~~~vg~~~~~ir~~f~~A~-~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
+++..+. ..+.+.....++.++..+. ...++||||||+|.+...+.... . ... .+.+...++ ..++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~-~~~---~~~l~~~~~----~~~~~~ 154 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-A-MDA---GNMLKPALA----RGELHC 154 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------C-CCC---HHHHHHHHH----TTSCCE
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-h-HHH---HHHHHHhhc----cCCeEE
Confidence 8877665 3456666777888887664 45688999999999875432211 1 111 222223333 346788
Q ss_pred EEecCCCC-----CCChhhhCCCCcceecccCCCCHHHHHHHH
Q 002169 788 IAATNRPD-----KIDPALLRPGRFDRLLYVGPPNETDREEIF 825 (957)
Q Consensus 788 I~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~~~er~~Il 825 (957)
|++||.++ .+++++.+ ||+ .+++++|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 99998876 78999999 997 6899999999998875
No 101
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=7.8e-15 Score=164.41 Aligned_cols=212 Identities=17% Similarity=0.150 Sum_probs=152.9
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC------CcEEEEe
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG------LNFLAVK 712 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~------~~~i~v~ 712 (957)
...+.+|++++|++++++.+..++.. ....+++|+||||||||++|+++|+.++ ..++.++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 45677899999999999998888753 1223499999999999999999998864 4688888
Q ss_pred CCCcccccccchHHHHHHHHHHHH----------------hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHH
Q 002169 713 GPELFSKWVGESEKAVRSLFAKAR----------------ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 776 (957)
Q Consensus 713 ~~~l~~~~vg~~~~~ir~~f~~A~----------------~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~l 776 (957)
+++..+ ...++..+.... ...+.||||||+|.+. ....+.|+..|
T Consensus 97 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-------------~~~~~~Ll~~l 157 (353)
T 1sxj_D 97 ASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-------------ADAQSALRRTM 157 (353)
T ss_dssp SSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-------------HHHHHHHHHHH
T ss_pred cccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-------------HHHHHHHHHHH
Confidence 776422 112222222111 1345699999999773 23456677777
Q ss_pred hccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHH
Q 002169 777 DGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADI 855 (957)
Q Consensus 777 d~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl 855 (957)
+... .+..+|++||.++.+++++.+ ||. .+.+++|+.++...+++..+.+.++. .+..+..+++.+.| +.+.+
T Consensus 158 e~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~ 231 (353)
T 1sxj_D 158 ETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRG 231 (353)
T ss_dssp HHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHH
T ss_pred HhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 7543 356788889999999999999 885 88999999999999999888765543 34457888888887 67777
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 856 SLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 856 ~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
.++++.++..+-... ....|+.+++.+++....
T Consensus 232 ~~~l~~~~~~~~~~~-~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 232 ITLLQSASKGAQYLG-DGKNITSTQVEELAGVVP 264 (353)
T ss_dssp HHHHHHTHHHHHHHC-SCCCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHhcCCCc-cCccccHHHHHHHhCCCC
Confidence 777777766553321 112699999998877433
No 102
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.62 E-value=1.3e-15 Score=167.95 Aligned_cols=205 Identities=21% Similarity=0.308 Sum_probs=143.6
Q ss_pred ccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc--
Q 002169 645 WEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK-- 719 (957)
Q Consensus 645 ~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~-- 719 (957)
.++++|++.+++.+...+...... + .-..++..+++|+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~---~-~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAG---L-KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 91 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHT---C-SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcC---C-CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc
Confidence 457889999999998887542110 0 0011233469999999999999999999987 567999998765432
Q ss_pred ---cc-------cchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhcccc--------
Q 002169 720 ---WV-------GESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQ-------- 781 (957)
Q Consensus 720 ---~v-------g~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~-------- 781 (957)
+. |.... ..+.........+||||||+|.+ ...+++.|+..|+...-
T Consensus 92 ~~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l-------------~~~~~~~Ll~~le~~~~~~~~~~~~ 156 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKA-------------HPDVFNILLQMLDDGRLTDSHGRTV 156 (311)
T ss_dssp HHHHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGS-------------CHHHHHHHHHHHHHSEEECTTSCEE
T ss_pred HHHhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhc-------------CHHHHHHHHHHHhcCEEEcCCCCEE
Confidence 11 11110 12233333444589999999966 35677788888875421
Q ss_pred -CCcEEEEEecCC--------------------------CCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC--
Q 002169 782 -RVNVTVIAATNR--------------------------PDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI-- 832 (957)
Q Consensus 782 -~~~v~VI~aTN~--------------------------~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~-- 832 (957)
..++++|+|||. ...++++|++ ||+..+.+++|+.+++..|++.++.+.
T Consensus 157 ~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~ 234 (311)
T 4fcw_A 157 DFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRA 234 (311)
T ss_dssp ECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHH
T ss_pred ECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 136779999998 4467889998 999999999999999999999877542
Q ss_pred -----CCC---CcccHHHHHHHcc--CCcHHHHHHHHHHHHHHHHHHh
Q 002169 833 -----PCS---SDVNIRELACLSE--GCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 833 -----~~~---~~~~l~~la~~t~--g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
+.. .+..+..++.... ..+++++++++++++..++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 282 (311)
T 4fcw_A 235 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 282 (311)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHH
T ss_pred HHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHH
Confidence 111 2234566666554 5678999999999888776553
No 103
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.61 E-value=1.7e-15 Score=177.40 Aligned_cols=185 Identities=25% Similarity=0.349 Sum_probs=138.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
..++++.|.+++++.+.+++.. ....++||+||||||||++|+++|..+ +.+++.+++
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 4678899999999988887432 335689999999999999999999986 778888888
Q ss_pred ccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 363 PEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 363 ~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
. ..+.|+.+..++.+|+.+....|.||||| . .....+.|+..| ..+.+.+|++||..+
T Consensus 245 ~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~~~a~~~L~~~L----~~g~v~vI~at~~~e 302 (468)
T 3pxg_A 245 G---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------AIDASNILKPSL----ARGELQCIGATTLDE 302 (468)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEEC-----C------------------CCCT----TSSSCEEEEECCTTT
T ss_pred C---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------chhHHHHHHHhh----cCCCEEEEecCCHHH
Confidence 7 67788888899999999988889999999 0 011122233333 356899999999987
Q ss_pred -----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC----CCCCCChHHHHHHHHHcCCCc-----HHHHHHHHH
Q 002169 443 -----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG----MEHSLLDSEVEYLSMATHGFV-----GADLAALCN 508 (957)
Q Consensus 443 -----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~----~~~~l~~~~l~~La~~t~g~~-----gaDi~~l~~ 508 (957)
.++++++| ||.. |.|+.|+.+++.+|++.++.. .+..+++..+..++..+++|. +.....++.
T Consensus 303 ~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~ 379 (468)
T 3pxg_A 303 YRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLID 379 (468)
T ss_dssp THHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHH
T ss_pred HHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHH
Confidence 68999999 9975 999999999999999988776 566788999999988876655 446777887
Q ss_pred HHHHHH
Q 002169 509 EAALVC 514 (957)
Q Consensus 509 ~A~~~a 514 (957)
+|+..+
T Consensus 380 ~a~~~~ 385 (468)
T 3pxg_A 380 EAGSKV 385 (468)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 104
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.61 E-value=1.3e-15 Score=154.10 Aligned_cols=158 Identities=25% Similarity=0.364 Sum_probs=117.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
..++++.|.+++++.+.+.+. ...+.+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQ------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred ccccccccchHHHHHHHHHHh------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 457789999998888877732 1346789999999999999999999886 678899998
Q ss_pred cccc--ccccchhHHHHHHHHHHHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 363 PEVV--SQNYGESEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 363 ~~l~--~~~~ge~e~~i~~vf~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
.++. ..+.++....++.+++.+. ...+.||+|||+|.+.+.+...... .+...|...+ ...++.+|++||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~l~~~~----~~~~~~~i~~~~ 159 (195)
T 1jbk_A 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPAL----ARGELHCVGATT 159 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHH----HTTSCCEEEEEC
T ss_pred HHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH---HHHHHHHHhh----ccCCeEEEEeCC
Confidence 8776 3455677778888888664 3458899999999997654221111 1122233333 345678899998
Q ss_pred CCC-----CchhhhhCCCCcceeeeecCCCHHHHHHHH
Q 002169 440 RPD-----SIEPALRRPGRLDREIEIAVPSPAQRLEIL 472 (957)
Q Consensus 440 ~~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il 472 (957)
.++ .+++++++ ||+ .+.++.|+.+++.+|+
T Consensus 160 ~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 876 68899999 998 5999999999998875
No 105
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.61 E-value=1.5e-14 Score=164.48 Aligned_cols=220 Identities=19% Similarity=0.266 Sum_probs=146.5
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhh------------------hhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTL------------------SSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~------------------~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
.++|++.+++.|...+.....+... ..-...++.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4899999999999887543322110 0012245678999999999999999999999999999
Q ss_pred EEeccccc-ccccchh-HHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCc---hHHHHHHHHHHHHhhccc--
Q 002169 359 TVNGPEVV-SQNYGES-EQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGE---ELSQRMVATLLNLMDGVC-- 427 (957)
Q Consensus 359 ~i~~~~l~-~~~~ge~-e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~---~~~~~i~~~Ll~~ld~l~-- 427 (957)
.+++..+. ..+.|+. +..+..++..+. ...++||||||+|.+...+..... .....+...|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3444543 445556665432 235789999999999876432211 111237788888888531
Q ss_pred -----------------cCCCeEEEEecCCCCC------------------------------------------chhhh
Q 002169 428 -----------------RTDGVLVIAATNRPDS------------------------------------------IEPAL 448 (957)
Q Consensus 428 -----------------~~~~v~vI~ttN~~~~------------------------------------------ld~al 448 (957)
...++++|+++|. +. +.|.+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~-~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAF-DGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp ---------------CEECTTCEEEEEECC-TTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCH-HHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 1255688888772 22 34555
Q ss_pred hCCCCcceeeeecCCCHHHHHHHHHH----H-------H--cCCCCCCChHHHHHHHHHcC--CCcHHHHHHHHHHHHHH
Q 002169 449 RRPGRLDREIEIAVPSPAQRLEILHA----L-------L--SGMEHSLLDSEVEYLSMATH--GFVGADLAALCNEAALV 513 (957)
Q Consensus 449 ~r~gRfd~~I~i~~P~~~~r~~Il~~----~-------l--~~~~~~l~~~~l~~La~~t~--g~~gaDi~~l~~~A~~~ 513 (957)
.+ ||+..+.|+.++.++..+|+.. + + ......+++..++.++.... ....+.+..+++.+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 55 8878899999999999998862 1 1 12345578889999988754 45678999999988887
Q ss_pred HHHHhc
Q 002169 514 CLRRYS 519 (957)
Q Consensus 514 a~rr~~ 519 (957)
++.+..
T Consensus 339 ~~~~~~ 344 (376)
T 1um8_A 339 IMFDLP 344 (376)
T ss_dssp HHHTGG
T ss_pred HHhhcc
Confidence 776543
No 106
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.60 E-value=7e-15 Score=170.72 Aligned_cols=175 Identities=12% Similarity=0.184 Sum_probs=129.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccC
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPA 403 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~ 403 (957)
+.+++|+||||||||+||+++++.+ +..++.+++.++...+.+.........|.......++||||||+|.+..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 6789999999999999999999988 78899999988755443332222122333333336889999999998642
Q ss_pred CcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCC---chhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcC
Q 002169 404 RKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDS---IEPALRRPGRLD--REIEIAVPSPAQRLEILHALLSG 478 (957)
Q Consensus 404 ~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~---ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~ 478 (957)
+ .....|+..++.+...+..+||++.+.+.. +++++++ ||. ..+.++.|+.++|.+|++..+..
T Consensus 210 ~---------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 210 T---------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp H---------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred h---------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 223456666665544455555555555554 7889988 886 67899999999999999998887
Q ss_pred CCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Q 002169 479 MEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCL 515 (957)
Q Consensus 479 ~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~ 515 (957)
.+..+++..++.++..+.| +.+++..+++.+...+.
T Consensus 279 ~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp HTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 7777888889999998875 67888888888766654
No 107
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.4e-15 Score=165.04 Aligned_cols=176 Identities=10% Similarity=0.133 Sum_probs=126.8
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEEEeCCCcccc----------c------ccchHHHHHH
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAVKGPELFSK----------W------VGESEKAVRS 730 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v~~~~l~~~----------~------vg~~~~~ir~ 730 (957)
...+.+++|+||||||||++++++++++ ...++.++|..+.+. . .+.....++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 3467889999999999999999999987 356889998775432 1 2335667788
Q ss_pred HHHHH--HhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC----ChhhhCC
Q 002169 731 LFAKA--RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI----DPALLRP 804 (957)
Q Consensus 731 ~f~~A--~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i----d~aLlr~ 804 (957)
.|..+ ....++|+||||+|.+. ...++..++.... ....++.||+++|..+.. ++++.+
T Consensus 122 ~f~~~~~~~~~~~ii~lDE~d~l~------------~q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 122 YITNVPKAKKRKTLILIQNPENLL------------SEKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHHSCGGGSCEEEEEEECCSSSC------------CTHHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHHhhhccCCceEEEEecHHHhh------------cchHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc-
Confidence 88875 35668899999999985 1234444544332 235579999999998764 444555
Q ss_pred CCcc-eecccCCCCHHHHHHHHHHHHhcCCC------------------------------------CCcccHHHHHHH-
Q 002169 805 GRFD-RLLYVGPPNETDREEIFRIHLRKIPC------------------------------------SSDVNIRELACL- 846 (957)
Q Consensus 805 gRfd-~~i~~~~P~~~er~~Il~~~l~~~~~------------------------------------~~~~~l~~la~~- 846 (957)
||. +.|.|++++.++..+|++..+....- ..+..++.+|+.
T Consensus 187 -R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~v 265 (318)
T 3te6_A 187 -KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNV 265 (318)
T ss_dssp -HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHH
T ss_pred -cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHH
Confidence 786 68999999999999999998876421 122235555653
Q ss_pred --ccCCcHHHHHHHHHHHHHHHHHH
Q 002169 847 --SEGCTGADISLICREAAISAIEE 869 (957)
Q Consensus 847 --t~g~sg~dl~~l~~eA~~~a~~~ 869 (957)
..| ..|..-++|+.|+..|-.+
T Consensus 266 A~~~G-D~R~Al~ilr~A~~~ae~e 289 (318)
T 3te6_A 266 ANVSG-STEKAFKICEAAVEISKKD 289 (318)
T ss_dssp HHHHC-SHHHHHHHHHHHHHHHHHH
T ss_pred HhhCC-hHHHHHHHHHHHHHHHHHH
Confidence 455 6777788899999888765
No 108
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.60 E-value=7.8e-15 Score=161.70 Aligned_cols=207 Identities=18% Similarity=0.242 Sum_probs=149.0
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc---
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN--- 369 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~--- 369 (957)
+++.|.+.+++.+...+...... +. -.-.+..+++|+||||||||++|+++|+.+ +.+++.++|..+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~--~~-~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG--LK-DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT--CS-CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC--CC-CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 35789999999999887554211 00 011234589999999999999999999987 4568999988764431
Q ss_pred --c-------chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc---------CCC
Q 002169 370 --Y-------GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR---------TDG 431 (957)
Q Consensus 370 --~-------ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~---------~~~ 431 (957)
. |... ...+.+.......+||||||+|.+. ..+...|+..|+...- ..+
T Consensus 94 ~l~g~~~~~~~~~~--~~~~~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 94 RLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDAIEKAH-----------PDVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHCCCTTSTTTTT--CCHHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HhcCCCCccccccc--cchHHHHHHhCCCeEEEEeChhhcC-----------HHHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 0 1000 0122222333345899999999883 2456778888876321 136
Q ss_pred eEEEEecCC--------------------------CCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC-------
Q 002169 432 VLVIAATNR--------------------------PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG------- 478 (957)
Q Consensus 432 v~vI~ttN~--------------------------~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~------- 478 (957)
+++|+|||. ...+++++.+ ||+..+.+.+|+.+++.+|++.++..
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 789999998 4466778887 99999999999999999999887654
Q ss_pred --CCCCCChHHHHHHHHHcC--CCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 479 --MEHSLLDSEVEYLSMATH--GFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 479 --~~~~l~~~~l~~La~~t~--g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
....+++..++.++.... .+..++|..+++.+...++.+...
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 284 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 284 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred CCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence 245578889999998765 678899999999988877766543
No 109
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=7.1e-14 Score=158.46 Aligned_cols=223 Identities=13% Similarity=0.122 Sum_probs=160.4
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCC--cceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCCC
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPT--GILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPE 715 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~--giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~~ 715 (957)
....++++|.++..+.+.+++..... + ..+. .++|+||||||||++++++++.+ +..++.+++..
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 33457899999999999888753211 1 2334 79999999999999999999988 57889999765
Q ss_pred cccc----------------cccchHHHH-HHHHHHHH-hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHh
Q 002169 716 LFSK----------------WVGESEKAV-RSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELD 777 (957)
Q Consensus 716 l~~~----------------~vg~~~~~i-r~~f~~A~-~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld 777 (957)
.... ..+.....+ ..+..... ...|.||+|||+|.+ ....+..|+..++
T Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-------------~~~~~~~L~~~~~ 150 (389)
T 1fnn_A 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-------------APDILSTFIRLGQ 150 (389)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-------------CHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-------------chHHHHHHHHHHH
Confidence 4321 011112222 22222222 245889999999976 2345666777776
Q ss_pred cccc--CCcEEEEEecCCC---CCCChhhhCCCCcce-ecccCCCCHHHHHHHHHHHHhc---CCCCCcccHHHHHHHc-
Q 002169 778 GLHQ--RVNVTVIAATNRP---DKIDPALLRPGRFDR-LLYVGPPNETDREEIFRIHLRK---IPCSSDVNIRELACLS- 847 (957)
Q Consensus 778 ~~~~--~~~v~VI~aTN~~---~~id~aLlr~gRfd~-~i~~~~P~~~er~~Il~~~l~~---~~~~~~~~l~~la~~t- 847 (957)
.... ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. .....+..+..++..+
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHS
T ss_pred hCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 5432 1488999999988 678888888 8865 7999999999999999988764 1222344577788888
Q ss_pred --------cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 848 --------EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 848 --------~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
.| +.+.+.++|+.|+..|..+. ...|+.+++..++......
T Consensus 229 ~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~--~~~i~~~~v~~~~~~~~~~ 277 (389)
T 1fnn_A 229 AQTPLDTNRG-DARLAIDILYRSAYAAQQNG--RKHIAPEDVRKSSKEVLFG 277 (389)
T ss_dssp BSSTTCTTSC-CHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHSCC
T ss_pred hcccCCCCCC-cHHHHHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHhhh
Confidence 45 67889999999988887654 5679999999998887655
No 110
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.59 E-value=8.6e-15 Score=161.41 Aligned_cols=209 Identities=20% Similarity=0.204 Sum_probs=146.0
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~ 713 (957)
...+..|++++|++++++.+.+.+.. ....+++|+||||||||++|+++|+.+ +.+++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 34567899999999999988877642 122349999999999999999999986 346888888
Q ss_pred CCcccccccchHHHHHHHHHHH-H-hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 714 PELFSKWVGESEKAVRSLFAKA-R-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A-~-~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
++..+. ......+....... . ...+.||+|||+|.+.. ...+.|+..++.. ..++.+|++|
T Consensus 77 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-------------~~~~~L~~~le~~--~~~~~~i~~~ 139 (319)
T 2chq_A 77 SDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-------------DAQAALRRTMEMY--SKSCRFILSC 139 (319)
T ss_dssp TSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-------------HHHHTTGGGTSSS--SSSEEEEEEE
T ss_pred ccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-------------HHHHHHHHHHHhc--CCCCeEEEEe
Confidence 764321 11111122111010 1 24578999999997732 3345566666642 3578899999
Q ss_pred CCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHh
Q 002169 792 NRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISAIEEN 870 (957)
Q Consensus 792 N~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~ 870 (957)
|.++.+.+++.+ ||. .+.+++|+.+++.++++..+.+.+.. .+..+..+++.+.| +.+.+.++++.++..
T Consensus 140 ~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~----- 210 (319)
T 2chq_A 140 NYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI----- 210 (319)
T ss_dssp SCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS-----
T ss_pred CChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-----
Confidence 999999999999 885 89999999999999999988876654 23346677777776 556666666554421
Q ss_pred cCCCCCCHHHHHHHHHhh
Q 002169 871 LDASRITMQHLKTAIRHV 888 (957)
Q Consensus 871 ~~~~~It~~d~~~al~~~ 888 (957)
...|+.+++...+...
T Consensus 211 --~~~i~~~~v~~~~~~~ 226 (319)
T 2chq_A 211 --GEVVDADTIYQITATA 226 (319)
T ss_dssp --SSCBCHHHHHHHTTCC
T ss_pred --CCCCCHHHHHHHHCCC
Confidence 2458888887766543
No 111
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=2.2e-14 Score=161.99 Aligned_cols=224 Identities=17% Similarity=0.232 Sum_probs=156.8
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh------CCcEEEEeCCC
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA------GLNFLAVKGPE 715 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~------~~~~i~v~~~~ 715 (957)
....++++|.++..+.+.+.+..... ...+..++|+||||||||++++++++.+ +.+++.+++..
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 34458899999999988887653211 2346679999999999999999999988 88899988643
Q ss_pred cccc----------------cccchHHH-HHHHHHHHHhC-CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHh
Q 002169 716 LFSK----------------WVGESEKA-VRSLFAKARAN-APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELD 777 (957)
Q Consensus 716 l~~~----------------~vg~~~~~-ir~~f~~A~~~-~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld 777 (957)
.... ..+..... ...++...... .|+||+|||++.+..... ..++..++..++
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~~ 157 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRINS 157 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc---------CHHHHHHhhchh
Confidence 2110 11222222 34444444443 389999999999864321 234556666665
Q ss_pred ccccCCcEEEEEecCCC---CCCChhhhCCCCcc-eecccCCCCHHHHHHHHHHHHhcCC---CCCcccHHHHHHHcc--
Q 002169 778 GLHQRVNVTVIAATNRP---DKIDPALLRPGRFD-RLLYVGPPNETDREEIFRIHLRKIP---CSSDVNIRELACLSE-- 848 (957)
Q Consensus 778 ~~~~~~~v~VI~aTN~~---~~id~aLlr~gRfd-~~i~~~~P~~~er~~Il~~~l~~~~---~~~~~~l~~la~~t~-- 848 (957)
.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++..+.... ...+..+..++..+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAARE 234 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHT
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 44 34578899999987 457888888 775 4899999999999999998776321 122334566777776
Q ss_pred -CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 849 -GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 849 -g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
| +.+.+.++|+.|+..|..+. ...|+.+|+..++....
T Consensus 235 ~G-~~r~~~~ll~~a~~~a~~~~--~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 235 HG-DARRALDLLRVSGEIAERMK--DTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TC-CHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHhcC--CCccCHHHHHHHHHHHh
Confidence 6 67788889999888776543 56799999998887654
No 112
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.1e-14 Score=160.85 Aligned_cols=200 Identities=10% Similarity=0.153 Sum_probs=142.9
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEecccccc
Q 002169 298 LGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNGPEVVS 367 (957)
Q Consensus 298 i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~~~l~~ 367 (957)
|.|.+++.+.|...+...+. -..+.+++|+||||||||++++++++++ +..++++||..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 67888888888887655532 2468899999999999999999999988 35688999977544
Q ss_pred cc----------------cchhHHHHHHHHHHH--hccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccC
Q 002169 368 QN----------------YGESEQALHEVFDSA--SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRT 429 (957)
Q Consensus 368 ~~----------------~ge~e~~i~~vf~~a--~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~ 429 (957)
.+ .++....++.+|+.. ....+.|++|||+|.+. . +.++..|+++... ..
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~---------q~~L~~l~~~~~~--~~ 161 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S---------EKILQYFEKWISS--KN 161 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C---------THHHHHHHHHHHC--SS
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c---------chHHHHHHhcccc--cC
Confidence 31 234556778888875 34567899999999997 1 2344445544322 45
Q ss_pred CCeEEEEecCCCCC----chhhhhCCCCcc-eeeeecCCCHHHHHHHHHHHHcCCCC-----------------------
Q 002169 430 DGVLVIAATNRPDS----IEPALRRPGRLD-REIEIAVPSPAQRLEILHALLSGMEH----------------------- 481 (957)
Q Consensus 430 ~~v~vI~ttN~~~~----ld~al~r~gRfd-~~I~i~~P~~~~r~~Il~~~l~~~~~----------------------- 481 (957)
.++++|+++|..+. +++++++ ||. +.|.|++++.++..+|++..+.....
T Consensus 162 s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 239 (318)
T 3te6_A 162 SKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQN 239 (318)
T ss_dssp CCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-----
T ss_pred CcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 67899999999875 4455566 776 57999999999999999988865321
Q ss_pred ------------CCChHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 482 ------------SLLDSEVEYLSMA---THGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 482 ------------~l~~~~l~~La~~---t~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
.+++..++.+|+. ..|- .+-.-.+|+.|+..|-++...
T Consensus 240 ~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD-~R~Al~ilr~A~~~ae~e~~~ 292 (318)
T 3te6_A 240 QKIPDNVIVINHKINNKITQLIAKNVANVSGS-TEKAFKICEAAVEISKKDFVR 292 (318)
T ss_dssp ---CTTEEEECEECCHHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCHHHHHHHHHHHHhhCCh-HHHHHHHHHHHHHHHHHHHHh
Confidence 3577888888884 3332 233445777787777665543
No 113
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.59 E-value=5.1e-14 Score=145.77 Aligned_cols=187 Identities=19% Similarity=0.199 Sum_probs=134.9
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccc
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVS 367 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~ 367 (957)
..++++.|.+..++.+.+.+... ...+++|+||||||||++++++++.+ ...++.+++.+..+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC
T ss_pred CCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC
Confidence 45678999999999998886422 23359999999999999999999875 35678888765432
Q ss_pred cccchhHHHHHHHHHH--HhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCch
Q 002169 368 QNYGESEQALHEVFDS--ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIE 445 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~--a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld 445 (957)
. ......+...... .....+.+|+|||+|.+.+ .....|+..++.. ..++.+|+++|.++.++
T Consensus 82 ~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~l~~~l~~~--~~~~~~i~~~~~~~~~~ 146 (226)
T 2chg_A 82 I--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMY--SKSCRFILSCNYVSRII 146 (226)
T ss_dssp H--HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHT--TTTEEEEEEESCGGGSC
T ss_pred h--HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCChhhcC
Confidence 1 1111122222111 0124588999999998843 2244566666653 45788999999999999
Q ss_pred hhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHH
Q 002169 446 PALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 446 ~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A 510 (957)
+++.+ ||. .+.++.|+.++..++++..+...+..+++..++.++..+.|. .+.+..+++.+
T Consensus 147 ~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~-~r~l~~~l~~~ 207 (226)
T 2chg_A 147 EPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGD-FRKAINALQGA 207 (226)
T ss_dssp HHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence 99998 887 799999999999999999887766677888899999887663 44444555444
No 114
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.58 E-value=4.5e-14 Score=155.89 Aligned_cols=205 Identities=15% Similarity=0.157 Sum_probs=150.2
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~ 713 (957)
...+..|++++|++++++.+.+++.. -..+ +++|+||+|||||++|+++|+.+ +.+++.+++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKD------------GNMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHS------------CCCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHc------------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 34566789999999999999888752 1223 39999999999999999999986 356888887
Q ss_pred CCcccccccchHHHHHHHHHHHH-------hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKAR-------ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~-------~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~ 786 (957)
++.. ....++.++.... ...+.||+|||+|.+.. ...+.|+..++.. ..++.
T Consensus 81 ~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-------------~~~~~L~~~le~~--~~~~~ 139 (323)
T 1sxj_B 81 SDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-------------GAQQALRRTMELY--SNSTR 139 (323)
T ss_dssp TSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-------------HHHHTTHHHHHHT--TTTEE
T ss_pred cccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-------------HHHHHHHHHHhcc--CCCce
Confidence 6632 2345566666554 33478999999997732 3345567777643 34688
Q ss_pred EEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHH
Q 002169 787 VIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAIS 865 (957)
Q Consensus 787 VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~ 865 (957)
+|++||.++.+.+++.+ |+. .+.+++|+.++..++++..+.+.+.. .+..+..++..+.| +.+.+.++++.++..
T Consensus 140 ~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~ 215 (323)
T 1sxj_B 140 FAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG 215 (323)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred EEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 88999999999999998 775 89999999999999999888765543 23456778888877 566666666655421
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhh
Q 002169 866 AIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 866 a~~~~~~~~~It~~d~~~al~~~ 888 (957)
...|+.+++.+++...
T Consensus 216 -------~~~i~~~~v~~~~~~~ 231 (323)
T 1sxj_B 216 -------HGLVNADNVFKIVDSP 231 (323)
T ss_dssp -------HSSBCHHHHHHHHTSC
T ss_pred -------CCCcCHHHHHHHHCCC
Confidence 1357888887776543
No 115
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.58 E-value=5.6e-14 Score=158.95 Aligned_cols=203 Identities=19% Similarity=0.190 Sum_probs=141.8
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEeccccc
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVV 366 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---------~~~~i~i~~~~l~ 366 (957)
+++.|.+++++.+.+.+... +....+.+++|+||||||||++++++++.+ +..++.++|....
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~--------~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 90 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPA--------LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRE 90 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGG--------TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHH--------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCC
Confidence 57899999999988875332 112457789999999999999999999988 7888999987643
Q ss_pred ccc----------------cch-hHHHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc
Q 002169 367 SQN----------------YGE-SEQALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR 428 (957)
Q Consensus 367 ~~~----------------~ge-~e~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~ 428 (957)
+.+ .|. .......+++.+.. ..|.||||||+|.+...+ .....+..++..++....
T Consensus 91 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~~~~ 164 (387)
T 2v1u_A 91 TPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQELGD 164 (387)
T ss_dssp SHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGCC--
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhhcCC
Confidence 211 111 22234444444433 347899999999986432 123444455555543321
Q ss_pred CCCeEEEEecCCC---CCchhhhhCCCCcce-eeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHHHcC---CCc
Q 002169 429 TDGVLVIAATNRP---DSIEPALRRPGRLDR-EIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSMATH---GFV 499 (957)
Q Consensus 429 ~~~v~vI~ttN~~---~~ld~al~r~gRfd~-~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~~t~---g~~ 499 (957)
..++.+|++||.+ +.+++.+++ ||.. .+.++.|+.+++.+|++..+.. ....+++..++.++..+. | .
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~ 241 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG-D 241 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC-C
T ss_pred CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc-C
Confidence 4578999999987 678899988 8865 7999999999999999988764 344567778888888876 5 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 002169 500 GADLAALCNEAALVCL 515 (957)
Q Consensus 500 gaDi~~l~~~A~~~a~ 515 (957)
.+.+..+++.|...+.
T Consensus 242 ~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 242 ARRALDLLRVAGEIAE 257 (387)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666677777765543
No 116
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.58 E-value=1.4e-15 Score=168.23 Aligned_cols=257 Identities=17% Similarity=0.190 Sum_probs=148.8
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc--
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW-- 720 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~-- 720 (957)
++++|.+...+.+.+.+... ...+.++||+||||||||++|++|+..+ +.+|+.++++.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 35789988888888777532 2346789999999999999999999975 5789999998763311
Q ss_pred ---cc----chHH---HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------c
Q 002169 721 ---VG----ESEK---AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------Q 781 (957)
Q Consensus 721 ---vg----~~~~---~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~ 781 (957)
.| .+.. .....|+.|.. .+||||||+.+. ...+..|+..|+... .
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~~---g~L~LDEi~~l~-------------~~~q~~Ll~~l~~~~~~~~g~~~~~ 134 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEADG---GTLFLDEIGDIS-------------PLMQVRLLRAIQEREVQRVGSNQTI 134 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHTT---SEEEEESCTTCC-------------HHHHHHHHHHHHSSBCCBTTBCCCC
T ss_pred HHhcCccccccCchhhhhcCHHHhcCC---CEEEEeccccCC-------------HHHHHHHHHHHhcCEeeecCCcccc
Confidence 11 1110 12345666654 499999999773 345667888887542 1
Q ss_pred CCcEEEEEecCCC-------CCCChhhhCCCCcc-eecccCCCC--HHHHHHHHHHHHh----cCCCC----CcccHHHH
Q 002169 782 RVNVTVIAATNRP-------DKIDPALLRPGRFD-RLLYVGPPN--ETDREEIFRIHLR----KIPCS----SDVNIREL 843 (957)
Q Consensus 782 ~~~v~VI~aTN~~-------~~id~aLlr~gRfd-~~i~~~~P~--~~er~~Il~~~l~----~~~~~----~~~~l~~l 843 (957)
..++.||+|||.. ..+++.|.. ||. ..|.+|+.. .++...+++.++. +.+.. .+..+..+
T Consensus 135 ~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L 212 (304)
T 1ojl_A 135 SVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLL 212 (304)
T ss_dssp BCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred cCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHH
Confidence 2468999999976 124555555 654 123444444 2344445555443 22221 12234555
Q ss_pred HHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchHHHHH-HHHHHHHHhcCchhhhhccccccc
Q 002169 844 ACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKE-LSAKFQRLVHSNAEADESGYQLRP 922 (957)
Q Consensus 844 a~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~~~~~y~~-~~~~~~~~v~~~~~~~~~~~~~~~ 922 (957)
......-+.++++++++.|+..+- ...|+.+|+...+....+.....+.. ..+.+++.++........++..+.
T Consensus 213 ~~~~wpGnvReL~~~l~~~~~~~~-----~~~i~~~~l~~~~~~~~~~~~~~l~~~~~~~~e~~~i~~~l~~~~gn~~~a 287 (304)
T 1ojl_A 213 IHYDWPGNIRELENAIERAVVLLT-----GEYISERELPLAIAATPIKTEYSGEIQPLVDVEKEVILAALEKTGGNKTEA 287 (304)
T ss_dssp HHCCCSSHHHHHHHHHHHHHHHCC-----SSSBCGGGSCGGGC-------CCSSCCCHHHHHHHHHHHHHHTTTTCHHHH
T ss_pred HcCCCCCCHHHHHHHHHHHHHhCC-----CCcccHHhhhhhhccCCCccCCCcchhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 555522368999999998886542 34566666543321100000000000 122344444444444444445555
Q ss_pred chhhh---hhhhhccCC
Q 002169 923 SKSIG---SNMWTLIKS 936 (957)
Q Consensus 923 ~~~~g---~~L~~~~k~ 936 (957)
++..| .+||.++|.
T Consensus 288 A~~Lgi~r~tl~~kl~~ 304 (304)
T 1ojl_A 288 ARQLGITRKTLLAKLSR 304 (304)
T ss_dssp HHHHTSCHHHHHHHTCC
T ss_pred HHHHCcCHHHHHHHHhC
Confidence 55554 779998763
No 117
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.57 E-value=8.9e-14 Score=145.63 Aligned_cols=185 Identities=20% Similarity=0.279 Sum_probs=138.3
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc----------------
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN---------------- 356 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~---------------- 356 (957)
..++++.|.+.+++.|.+.+... ..+..++|+||||||||++++++++.++..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 35678999999999998886432 224579999999999999999999877432
Q ss_pred --------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhh
Q 002169 357 --------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 424 (957)
Q Consensus 357 --------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld 424 (957)
++.+++.. ......++.+++.+. ...+.+|+|||+|.+. ......|+..++
T Consensus 89 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----------~~~~~~l~~~l~ 151 (250)
T 1njg_A 89 IEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKTLE 151 (250)
T ss_dssp HHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHHHHHHHHHH
T ss_pred HhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----------HHHHHHHHHHHh
Confidence 22222211 122344566666543 2347899999999873 234456777776
Q ss_pred ccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHH
Q 002169 425 GVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLA 504 (957)
Q Consensus 425 ~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~ 504 (957)
.. ..++.+|++||.++.+++++.+ |+ ..+.++.++.++..++++.++...+..+++..++.++..+.| ..+.+.
T Consensus 152 ~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~ 225 (250)
T 1njg_A 152 EP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDAL 225 (250)
T ss_dssp SC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHH
T ss_pred cC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 53 4578999999999889999988 65 568999999999999999988877777788889999999977 677888
Q ss_pred HHHHHHH
Q 002169 505 ALCNEAA 511 (957)
Q Consensus 505 ~l~~~A~ 511 (957)
.+++.|.
T Consensus 226 ~~~~~~~ 232 (250)
T 1njg_A 226 SLTDQAI 232 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887763
No 118
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.57 E-value=4.8e-14 Score=159.23 Aligned_cols=206 Identities=19% Similarity=0.242 Sum_probs=150.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC------------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL------------ 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------ 706 (957)
...+..|++++|++++++.+...+.. -+.+..++|+||+|||||++|+++|+.++.
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 34566899999999999999888742 123456899999999999999999998754
Q ss_pred ------------cEEEEeCCCcccccccchHHHHHHHHHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHH
Q 002169 707 ------------NFLAVKGPELFSKWVGESEKAVRSLFAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMS 770 (957)
Q Consensus 707 ------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~ 770 (957)
.++.+++..- .....++.+++.+.. ..+.||+|||+|.+. ....+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~ 137 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-------------RHSFN 137 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-------------HHHHH
T ss_pred HHHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-------------HHHHH
Confidence 2333333210 112345666666542 346899999999762 34566
Q ss_pred HHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHccC
Q 002169 771 QLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSS-DVNIRELACLSEG 849 (957)
Q Consensus 771 ~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~-~~~l~~la~~t~g 849 (957)
.|+..++.. ..++++|++|+.+..+.+++.+ |+ ..+.+++|+.++..++++..+.+.+... +..+..+++.+.|
T Consensus 138 ~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G 212 (373)
T 1jr3_A 138 ALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 (373)
T ss_dssp HHHHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS
T ss_pred HHHHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 788888753 4578899999999999999998 77 6899999999999999999887665542 3346778888887
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHh
Q 002169 850 CTGADISLICREAAISAIEENLDASRITMQHLKTAIRH 887 (957)
Q Consensus 850 ~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~ 887 (957)
+.+++.++++.+...+ ...|+.+++..++..
T Consensus 213 -~~r~~~~~l~~~~~~~------~~~i~~~~v~~~~~~ 243 (373)
T 1jr3_A 213 -SLRDALSLTDQAIASG------DGQVSTQAVSAMLGT 243 (373)
T ss_dssp -CHHHHHHHHHHHHHHT------TTCBCHHHHHHHTTC
T ss_pred -CHHHHHHHHHHHHHhc------CCcccHHHHHHHhCC
Confidence 7888888888775432 245777777666543
No 119
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.56 E-value=2.6e-14 Score=158.86 Aligned_cols=177 Identities=20% Similarity=0.248 Sum_probs=132.7
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYG 371 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~g 371 (957)
+.+++++.|.++.++.|++++.. -..+..+|++||||||||++|+++|+.++.+++.+++++..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~----- 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK----- 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-----
T ss_pred CCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-----
Confidence 45788999999999999988652 13355678889999999999999999999999999987632
Q ss_pred hhHHHHHHHHHHHhcc-----CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchh
Q 002169 372 ESEQALHEVFDSASQS-----APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEP 446 (957)
Q Consensus 372 e~e~~i~~vf~~a~~~-----~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~ 446 (957)
...++..+...... .+.||||||+|.+.. ......|+..++.. ..++.+|++||.+..+++
T Consensus 86 --~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~--~~~~~iI~~~n~~~~l~~ 151 (324)
T 3u61_B 86 --IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY--SSNCSIIITANNIDGIIK 151 (324)
T ss_dssp --HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH--GGGCEEEEEESSGGGSCT
T ss_pred --HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC--CCCcEEEEEeCCccccCH
Confidence 23444444433222 578999999998841 23445677777764 346789999999999999
Q ss_pred hhhCCCCcceeeeecCCCHHHHHHHHHHH-------HcCCCCCCCh-HHHHHHHHHcCCCcHH
Q 002169 447 ALRRPGRLDREIEIAVPSPAQRLEILHAL-------LSGMEHSLLD-SEVEYLSMATHGFVGA 501 (957)
Q Consensus 447 al~r~gRfd~~I~i~~P~~~~r~~Il~~~-------l~~~~~~l~~-~~l~~La~~t~g~~ga 501 (957)
++++ ||. .+.|+.|+.+++.+|++.+ +...+..+++ ..++.++..+.|-...
T Consensus 152 ~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 152 PLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp THHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH
T ss_pred HHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH
Confidence 9999 885 5999999999976665443 3334556667 8899999987765433
No 120
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.56 E-value=5.6e-14 Score=163.13 Aligned_cols=184 Identities=18% Similarity=0.255 Sum_probs=136.3
Q ss_pred cccccccCCcHHHH---HHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccccc
Q 002169 292 EQDISKLGGLSKEY---AILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQ 368 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~---~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~ 368 (957)
..+++++.|.+..+ +.|+..+... ...++||+||||||||++|+++|+.++.+++.+++...
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~--- 86 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS--- 86 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC---
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC---
Confidence 45788999999998 6676665332 12579999999999999999999999999999987442
Q ss_pred ccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec--CCCC
Q 002169 369 NYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT--NRPD 442 (957)
Q Consensus 369 ~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt--N~~~ 442 (957)
....++.+|+.+. ...+.||||||+|.+.... ...|+..++. +.+++|++| |...
T Consensus 87 ----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-----------q~~LL~~le~----~~v~lI~att~n~~~ 147 (447)
T 3pvs_A 87 ----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-----------QDAFLPHIED----GTITFIGATTENPSF 147 (447)
T ss_dssp ----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEESSCGGG
T ss_pred ----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-----------HHHHHHHHhc----CceEEEecCCCCccc
Confidence 2234555555544 3467899999999985432 2346777764 457788777 4455
Q ss_pred CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC-------CCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 002169 443 SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG-------MEHSLLDSEVEYLSMATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 443 ~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~-------~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~ 513 (957)
.+++++++ |+. .+.++.|+.+++.++++..+.. ....+++..++.++..+.| ..+.+.++++.+...
T Consensus 148 ~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 148 ELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADM 221 (447)
T ss_dssp SSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred ccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 88999999 775 5889999999999999999876 4456788999999999766 456666666666543
No 121
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=6e-14 Score=155.19 Aligned_cols=205 Identities=23% Similarity=0.290 Sum_probs=145.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-----CcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-----~~~i~v~~ 713 (957)
...+.+|++++|++++++.+..++.. + ...+++|+||||||||++|+++|+.+. ..++.+++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 35667899999999999999887752 1 223599999999999999999999863 35788887
Q ss_pred CCcccccccchHHHHHHHHHHH-H-----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKA-R-----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A-~-----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
++..+ ...++..+... . ...+.||+|||+|.+. ....+.|+..++.. ..++.+
T Consensus 85 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-------------~~~~~~L~~~le~~--~~~~~~ 143 (327)
T 1iqp_A 85 SDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADALT-------------QDAQQALRRTMEMF--SSNVRF 143 (327)
T ss_dssp TCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-------------HHHHHHHHHHHHHT--TTTEEE
T ss_pred cccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-------------HHHHHHHHHHHHhc--CCCCeE
Confidence 65321 11222222221 1 1457899999999763 33456677777753 347888
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++||.++.+.+++.+ ||. .+.|++|+.++..++++..+.+.+.. .+..+..++..+.| +.+.+.++++.+...
T Consensus 144 i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~~- 218 (327)
T 1iqp_A 144 ILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAAL- 218 (327)
T ss_dssp EEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHTT-
T ss_pred EEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHhc-
Confidence 9999999999999998 886 78999999999999999888766543 23456778888877 666666776654421
Q ss_pred HHHhcCCCCCCHHHHHHHHHhh
Q 002169 867 IEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~ 888 (957)
...|+.+++...+...
T Consensus 219 ------~~~i~~~~v~~~~~~~ 234 (327)
T 1iqp_A 219 ------DKKITDENVFMVASRA 234 (327)
T ss_dssp ------CSEECHHHHHHHTTCC
T ss_pred ------CCCCCHHHHHHHHCCC
Confidence 2346666666555443
No 122
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=2.7e-14 Score=169.16 Aligned_cols=193 Identities=18% Similarity=0.277 Sum_probs=132.1
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhh--hhhhhcCCC---CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVK--STLSSLGLR---PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~--~~~~~l~i~---~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~ 366 (957)
+.++++++|.+.+++.|++++...... ..+...+.. +++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 457889999999999999998653222 233333433 568999999999999999999999999999999998876
Q ss_pred ccccchhHH-------HHHHHHHHH-----hccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEE
Q 002169 367 SQNYGESEQ-------ALHEVFDSA-----SQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLV 434 (957)
Q Consensus 367 ~~~~ge~e~-------~i~~vf~~a-----~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~v 434 (957)
..+..+... .+..+|+.+ ....+.||||||+|.+..... ..+..|+.+++.. ...+++
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~~--~~~iIl 184 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKT--STPLIL 184 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHC--SSCEEE
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHhc--CCCEEE
Confidence 543211100 012223322 224578999999999975432 1245566666542 223333
Q ss_pred EEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCC
Q 002169 435 IAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGF 498 (957)
Q Consensus 435 I~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~ 498 (957)
|+++.....+. .++ |+...+.|+.|+.+++.+++...+...+..+++..++.++..+.|-
T Consensus 185 i~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~Gd 244 (516)
T 1sxj_A 185 ICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGD 244 (516)
T ss_dssp EESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTC
T ss_pred EEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Confidence 33332233443 344 3445799999999999999998887766777888899999988663
No 123
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=9.2e-14 Score=156.09 Aligned_cols=192 Identities=14% Similarity=0.181 Sum_probs=135.7
Q ss_pred hcCCccccccCChHHHHHHHHHHH-hchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC-----------
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAV-EWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL----------- 706 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i-~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~----------- 706 (957)
...+.+|++++|++++++.+..++ .. .+.+. ++|+|||||||||+++++|+++..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~~~------------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSDQP------------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTCT------------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHhhC------------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 345678999999999998887766 21 12233 999999999999999999996421
Q ss_pred ------------------cEEEEeCCCcccccccchHHHHHHHHHHHH--------------hCCCeEEEEeCCchhhhh
Q 002169 707 ------------------NFLAVKGPELFSKWVGESEKAVRSLFAKAR--------------ANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 707 ------------------~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~--------------~~~p~ILfiDEid~l~~~ 754 (957)
.++.++..+.. ......++..++.+. ...|.||+|||++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L--- 146 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL--- 146 (354)
T ss_dssp ------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS---
T ss_pred eecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc---
Confidence 12223222110 001113455555442 236789999999975
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCC
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPC 834 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~ 834 (957)
.....+.++..|+.. ..++.+|++||.++.+.+++.+ || ..+.|++|+.+++.++++..+.+.++
T Consensus 147 ----------~~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 147 ----------TKDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp ----------CHHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred ----------CHHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 234456777777754 3368899999999999999998 88 78999999999999999988876554
Q ss_pred C-C-cccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 835 S-S-DVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 835 ~-~-~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
. . +..+..+++.+.| +.+++.++++.++..+
T Consensus 212 ~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 212 QLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp EECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred CCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 3 2 4457888888887 7777777777666543
No 124
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.54 E-value=9.8e-14 Score=146.14 Aligned_cols=190 Identities=14% Similarity=0.142 Sum_probs=133.5
Q ss_pred ccccccCC---cHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---CcEEEEeccccc
Q 002169 293 QDISKLGG---LSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---VNLFTVNGPEVV 366 (957)
Q Consensus 293 ~~~~~i~G---l~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~---~~~i~i~~~~l~ 366 (957)
.+|+++.| ....++.++.++.. ..+.+++|+||||||||++|++++..+. ..++.+++.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 34556655 34555555555321 2467899999999999999999998764 678889888776
Q ss_pred ccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC-CCC---
Q 002169 367 SQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN-RPD--- 442 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN-~~~--- 442 (957)
..... .++. ...+.+|+|||+|.+.... .....|+..++.....+.+.+|++++ .++
T Consensus 93 ~~~~~--------~~~~--~~~~~vliiDe~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 93 SISTA--------LLEG--LEQFDLICIDDVDAVAGHP---------LWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp GSCGG--------GGTT--GGGSSEEEEETGGGGTTCH---------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred HHHHH--------HHHh--ccCCCEEEEeccccccCCH---------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 54321 1111 1347899999999885321 12344666666554444443444554 443
Q ss_pred CchhhhhCCCCcc--eeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 002169 443 SIEPALRRPGRLD--REIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 443 ~ld~al~r~gRfd--~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~r 516 (957)
.+++++.+ ||. ..+.++.|+.+++.++++.++...+..+++..++.++..+.| ..+++..+++.+...+..
T Consensus 154 ~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 154 FVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp CCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 45577887 775 779999999999999999998877778889999999998866 678888888887766643
No 125
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.53 E-value=2.3e-14 Score=168.06 Aligned_cols=224 Identities=16% Similarity=0.166 Sum_probs=140.4
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCC-----Cccc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGP-----ELFS 718 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~-----~l~~ 718 (957)
..++|++++++.+..++.. ..++||+||||||||++|++||..++ .+|..+.+. ++++
T Consensus 22 ~~ivGq~~~i~~l~~al~~---------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS---------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH---------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhc---------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 4588999999887766532 35799999999999999999999884 356655553 2222
Q ss_pred ccccchHHHHHHHHHHHHhC---CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc--------cCCcEEE
Q 002169 719 KWVGESEKAVRSLFAKARAN---APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------QRVNVTV 787 (957)
Q Consensus 719 ~~vg~~~~~ir~~f~~A~~~---~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------~~~~v~V 787 (957)
.+.+..... ...|..+..+ .++|||||||+.+ ...+.+.|+..|+... .....++
T Consensus 87 ~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~-------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~i 152 (500)
T 3nbx_X 87 PLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA-------------GPAILNTLLTAINERQFRNGAHVEKIPMRLL 152 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGC-------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEE
T ss_pred cccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh-------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhh
Confidence 222211111 2223322222 4679999999854 4667788888886321 1112246
Q ss_pred EEecCCCCC---CChhhhCCCCcceecccCCCCH-HHHHHHHHHHHhcC-------------------------CCCCcc
Q 002169 788 IAATNRPDK---IDPALLRPGRFDRLLYVGPPNE-TDREEIFRIHLRKI-------------------------PCSSDV 838 (957)
Q Consensus 788 I~aTN~~~~---id~aLlr~gRfd~~i~~~~P~~-~er~~Il~~~l~~~-------------------------~~~~~~ 838 (957)
|+|||.+.. ..+++++ ||...+++++|+. +++..|++.+.... .+. +.
T Consensus 153 I~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~ 229 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLP-DH 229 (500)
T ss_dssp EEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCC-HH
T ss_pred hhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCc-hH
Confidence 788886432 4469999 9988899999987 67888887654211 111 11
Q ss_pred cHHHHHHHc---------cCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCchHHHHHHHHHHH
Q 002169 839 NIRELACLS---------EGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSEIHSYKELSAKFQ 904 (957)
Q Consensus 839 ~l~~la~~t---------~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~~~~~y~~~~~~~~ 904 (957)
..+.++... .|.|.|.+..+++.|...|..+. ...|+.+|+. .+..+..........+...++
T Consensus 230 v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g--r~~Vt~eDv~-~a~~vL~hr~~~~~~~~~~i~ 301 (500)
T 3nbx_X 230 VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG--RSAVAPVDLI-LLKDCLWYDAQSLNLIQQQID 301 (500)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT--CSBCCGGGGG-GGGGTSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcC--CccccchHHH-HHHhhhhcCchHhHHHHHHHH
Confidence 123333333 47899999999998877777665 5678888888 555555443333333333333
No 126
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.52 E-value=7.6e-15 Score=148.16 Aligned_cols=152 Identities=22% Similarity=0.356 Sum_probs=111.3
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----------CCcEEEE
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----------GLNFLAV 711 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----------~~~~i~v 711 (957)
...|++++|.++..+.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 45789999999988888776632 345679999999999999999999987 6788888
Q ss_pred eCCCcc--cccccchHHHHHHHHHHHHhC-CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEE
Q 002169 712 KGPELF--SKWVGESEKAVRSLFAKARAN-APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVI 788 (957)
Q Consensus 712 ~~~~l~--~~~vg~~~~~ir~~f~~A~~~-~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI 788 (957)
++..+. ..+.+.....++.++..+... .|.+|||||+|.+...+...... ..+.+.+...++ ..++.+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~----~~~~~~l~~~~~----~~~~~ii 156 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA----LDAGNILKPMLA----RGELRCI 156 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS----CCTHHHHHHHHH----TTCSCEE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc----hHHHHHHHHHHh----cCCeeEE
Confidence 766554 234556666778888777665 68899999999986544311111 122333333443 3468899
Q ss_pred EecCCCC-----CCChhhhCCCCcceecccCCCC
Q 002169 789 AATNRPD-----KIDPALLRPGRFDRLLYVGPPN 817 (957)
Q Consensus 789 ~aTN~~~-----~id~aLlr~gRfd~~i~~~~P~ 817 (957)
++||.++ .+++++.+ ||+ .+++++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 9999775 68999999 998 48898885
No 127
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.52 E-value=2.2e-14 Score=144.80 Aligned_cols=151 Identities=23% Similarity=0.342 Sum_probs=111.2
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----------CCcEEEEec
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----------GVNLFTVNG 362 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l----------~~~~i~i~~ 362 (957)
..++++.|.+.+++.+.+.+. -..+.+++|+||||||||++|++++..+ +.+++.+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILS------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred cccchhhcchHHHHHHHHHHh------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 457789999998888877641 1346789999999999999999999887 778888888
Q ss_pred ccccc--cccchhHHHHHHHHHHHhcc-CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 363 PEVVS--QNYGESEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 363 ~~l~~--~~~ge~e~~i~~vf~~a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
..+.. .+.+.....+..+++.+... .|.+|||||+|.+.+.+..... ...+...|...++ ..++.+|+++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~--~~~~~~~l~~~~~----~~~~~ii~~~~ 160 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG--ALDAGNILKPMLA----RGELRCIGATT 160 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT--SCCTHHHHHHHHH----TTCSCEEEEEC
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc--chHHHHHHHHHHh----cCCeeEEEecC
Confidence 77653 34566677788888777655 6789999999999755431110 0112233333333 46788999999
Q ss_pred CCC-----CchhhhhCCCCcceeeeecCCC
Q 002169 440 RPD-----SIEPALRRPGRLDREIEIAVPS 464 (957)
Q Consensus 440 ~~~-----~ld~al~r~gRfd~~I~i~~P~ 464 (957)
.++ .+++++++ ||+. +.++.|+
T Consensus 161 ~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 161 VSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp HHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred HHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 765 68899999 9985 8888885
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=2.4e-13 Score=154.04 Aligned_cols=195 Identities=18% Similarity=0.148 Sum_probs=137.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----------CCcEEEEeccc
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----------GVNLFTVNGPE 364 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-----------~~~~i~i~~~~ 364 (957)
+++.|.+++++.+.+.+..... -..+.+++|+||||||||++|+++++++ +..++.++|.+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 5789999999999988754422 1346689999999999999999999987 88999999876
Q ss_pred cc-ccc-----------------cch-hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHH-HHHHHHHhh
Q 002169 365 VV-SQN-----------------YGE-SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRM-VATLLNLMD 424 (957)
Q Consensus 365 l~-~~~-----------------~ge-~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i-~~~Ll~~ld 424 (957)
.. ..+ .+. ....+..+++.+.... .||+|||+|.+..... ... +..|+...
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~-------~~~~l~~l~~~~- 162 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG-------GDIVLYQLLRSD- 162 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT-------SHHHHHHHHTSS-
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC-------CceeHHHHhcCC-
Confidence 43 110 011 1233444444444333 3999999999864321 111 22232222
Q ss_pred ccccCCCeEEEEecCCC---CCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHHHcCCC-
Q 002169 425 GVCRTDGVLVIAATNRP---DSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSMATHGF- 498 (957)
Q Consensus 425 ~l~~~~~v~vI~ttN~~---~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~~t~g~- 498 (957)
.++.+|++||.+ +.+++++++ ||...+.++.|+.++..++++..+.. ....+++..++.++..+.+.
T Consensus 163 -----~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 235 (384)
T 2qby_B 163 -----ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEH 235 (384)
T ss_dssp -----SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTC
T ss_pred -----cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhcc
Confidence 678999999987 678899988 88778999999999999999998763 23456788888898887622
Q ss_pred -cHHHHHHHHHHHHHHH
Q 002169 499 -VGADLAALCNEAALVC 514 (957)
Q Consensus 499 -~gaDi~~l~~~A~~~a 514 (957)
..+.+..+++.|...+
T Consensus 236 G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 236 GDARKAVNLLFRAAQLA 252 (384)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 2345556666665443
No 129
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.49 E-value=5.9e-13 Score=148.41 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=131.9
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecc------cccc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP------EVVS 367 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~------~l~~ 367 (957)
.++++.|.+..++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++. ++.+
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 346789999888777665321 35899999999999999999999999999988873 2222
Q ss_pred cccchhHHHHHHHHHHHhccC---CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc---------ccCCCeEEE
Q 002169 368 QNYGESEQALHEVFDSASQSA---PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV---------CRTDGVLVI 435 (957)
Q Consensus 368 ~~~ge~e~~i~~vf~~a~~~~---p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l---------~~~~~v~vI 435 (957)
........ ..| ..... .+||||||+|.+. ......|+..|+.. ....++++|
T Consensus 91 ~~~~~~~~---~~~--~~~~g~l~~~vl~iDEi~~~~-----------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi 154 (331)
T 2r44_A 91 TMIYNQHK---GNF--EVKKGPVFSNFILADEVNRSP-----------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVL 154 (331)
T ss_dssp EEEEETTT---TEE--EEEECTTCSSEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEE
T ss_pred ceeecCCC---Cce--EeccCcccccEEEEEccccCC-----------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEE
Confidence 21100000 000 00111 3699999999873 23455677777642 123467888
Q ss_pred EecCCCC-----CchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCC----------------------CCCCChHHH
Q 002169 436 AATNRPD-----SIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGM----------------------EHSLLDSEV 488 (957)
Q Consensus 436 ~ttN~~~-----~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~----------------------~~~l~~~~l 488 (957)
+|+|+.+ .+++++++ ||+..+.++.|+.+++.+|++..+... ...+++..+
T Consensus 155 at~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 232 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLE 232 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHH
T ss_pred EecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHH
Confidence 8888654 38999999 998889999999999999999887653 334566666
Q ss_pred HHHHHHc-------------------CCCcHHHHHHHHHHHHHHHHHH
Q 002169 489 EYLSMAT-------------------HGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 489 ~~La~~t-------------------~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+.++... .|.+.+.+..+++.|...|.-+
T Consensus 233 ~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~ 280 (331)
T 2r44_A 233 KYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN 280 (331)
T ss_dssp HHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc
Confidence 6665432 2457788888887776655433
No 130
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=2.9e-13 Score=151.60 Aligned_cols=190 Identities=15% Similarity=0.162 Sum_probs=135.6
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC------CcEEEEecccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG------VNLFTVNGPEV 365 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~------~~~i~i~~~~l 365 (957)
+..++++.|.+++++.|...+.. ....+++|+||||||||++|+++|+.++ ..++.+++++.
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 100 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKS------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 100 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred CCCHHHhhCCHHHHHHHHHHHhc------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc
Confidence 45678999999999888777421 1124599999999999999999998864 45788888764
Q ss_pred cccccchhHHHHHHHHHH------------HhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeE
Q 002169 366 VSQNYGESEQALHEVFDS------------ASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVL 433 (957)
Q Consensus 366 ~~~~~ge~e~~i~~vf~~------------a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~ 433 (957)
.+. +.....+...... .....+.||||||+|.+.+ .....|+..|+.. ..+..
T Consensus 101 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-----------~~~~~Ll~~le~~--~~~~~ 165 (353)
T 1sxj_D 101 RGI--SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-----------DAQSALRRTMETY--SGVTR 165 (353)
T ss_dssp CCH--HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHT--TTTEE
T ss_pred cch--HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------HHHHHHHHHHHhc--CCCce
Confidence 221 1111111111110 0112456999999998843 2345677777764 34567
Q ss_pred EEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 002169 434 VIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAAL 512 (957)
Q Consensus 434 vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~ 512 (957)
+|+++|.++.+++++++ |+. .+.++.|+.++..++++..+...+..+++..++.++..+.|.. +.+.++++.+..
T Consensus 166 ~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~-r~~~~~l~~~~~ 240 (353)
T 1sxj_D 166 FCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDL-RRGITLLQSASK 240 (353)
T ss_dssp EEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCH-HHHHHHHHHTHH
T ss_pred EEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHHH
Confidence 88899999999999998 875 6899999999999999998887777889999999999988753 444444444443
No 131
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.49 E-value=1.5e-12 Score=145.64 Aligned_cols=196 Identities=21% Similarity=0.311 Sum_probs=142.5
Q ss_pred ccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccch
Q 002169 293 QDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGE 372 (957)
Q Consensus 293 ~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge 372 (957)
.+++++.|.+.+++.+...+...... + .++.+++|+||||||||||++++|++++.++...+++.+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~------~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMR------G-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHH------T-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhc------C-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 35677888888888877766443211 1 34578999999999999999999999999887777655422
Q ss_pred hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc----------------cCCCeEEEE
Q 002169 373 SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC----------------RTDGVLVIA 436 (957)
Q Consensus 373 ~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~----------------~~~~v~vI~ 436 (957)
...+..++... ..+.|+||||++.+.+ .....|+..++... .-..+.+++
T Consensus 90 -~~~l~~~~~~~--~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 90 -QGDMAAILTSL--ERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -HHHHHHHHHHC--CTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -HHHHHHHHHHc--cCCCEEEEcchhhcCH-----------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 12233333322 2457999999998853 12223333343211 012467888
Q ss_pred ecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Q 002169 437 ATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 437 ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~r 516 (957)
+++++..+++++++ ||...+.++.|+.+++.+|++.........+++..+..++..+.|.. +.+..+++.+...|..
T Consensus 156 at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~~~~~a~~ 232 (334)
T 1in4_A 156 ATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKRVRDMLTV 232 (334)
T ss_dssp EESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHH
Confidence 99999999999999 99877899999999999999998877777788889999999988754 7777888877666544
Q ss_pred H
Q 002169 517 R 517 (957)
Q Consensus 517 r 517 (957)
+
T Consensus 233 ~ 233 (334)
T 1in4_A 233 V 233 (334)
T ss_dssp H
T ss_pred c
Confidence 3
No 132
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.48 E-value=2.3e-13 Score=150.00 Aligned_cols=187 Identities=19% Similarity=0.210 Sum_probs=134.5
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~ 366 (957)
+..++++.|.+..++.|++.+.. ....+++|+||||||||++|+++++.+ +..++.+++++..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 80 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER 80 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcccc
Confidence 34678899999999888776421 122359999999999999999999986 3457888887653
Q ss_pred ccccchhHHHHHHHHHHH-h-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 367 SQNYGESEQALHEVFDSA-S-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a-~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
+. ......+....... . ...+.||+|||+|.+.. .....|+..++.. ..++.+|++||.++.+
T Consensus 81 ~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~i~~~~~~~~l 145 (319)
T 2chq_A 81 GI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMY--SKSCRFILSCNYVSRI 145 (319)
T ss_dssp CT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSSS--SSSEEEEEEESCGGGS
T ss_pred Ch--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCChhhc
Confidence 31 12222222222111 1 24478999999998842 2234466666552 4578899999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
.+++++ |+. .+.++.|+.+++.+++...+...+..+++..++.++..+.|.. +.+.++++.
T Consensus 146 ~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~-r~~~~~l~~ 206 (319)
T 2chq_A 146 IEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDF-RKAINALQG 206 (319)
T ss_dssp CHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCH-HHHHHHHHH
T ss_pred chHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHH
Confidence 999998 775 6999999999999999999988888889999999998776643 333344433
No 133
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=3.9e-13 Score=150.62 Aligned_cols=210 Identities=21% Similarity=0.224 Sum_probs=142.7
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC-----CcEEEEeC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG-----LNFLAVKG 713 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~-----~~~i~v~~ 713 (957)
...+..|++++|++++++.+...+.. + +.+ +++|+||||||||++|+++|+.+. ..++.++.
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 45667899999999999988877752 1 222 499999999999999999999863 24677777
Q ss_pred CCcccccccchHHHHHHHHHHHHh------CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE
Q 002169 714 PELFSKWVGESEKAVRSLFAKARA------NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV 787 (957)
Q Consensus 714 ~~l~~~~vg~~~~~ir~~f~~A~~------~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V 787 (957)
++..+ ...++..+..... ..+.|++|||+|.+. ....+.|+..++.. ...+.+
T Consensus 85 ~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-------------~~~~~~L~~~le~~--~~~~~~ 143 (340)
T 1sxj_C 85 SDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-------------NAAQNALRRVIERY--TKNTRF 143 (340)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-------------HHHHHHHHHHHHHT--TTTEEE
T ss_pred ccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-------------HHHHHHHHHHHhcC--CCCeEE
Confidence 65321 2344444443321 236899999999773 23456788888754 346778
Q ss_pred EEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 788 IAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCS-SDVNIRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 788 I~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
|++||.+..+.+++.+ |+. .+.|++++.++..++++..+...++. .+.....++..+.| +.+++.++++.++..+
T Consensus 144 il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~~ 219 (340)
T 1sxj_C 144 CVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKATL 219 (340)
T ss_dssp EEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTT
T ss_pred EEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc
Confidence 8899999999999999 885 78898999999888888888544432 23346667777776 4444444444332211
Q ss_pred HHHhcCCCCCCHHHHHHHHHhh
Q 002169 867 IEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 867 ~~~~~~~~~It~~d~~~al~~~ 888 (957)
.. -+...|+.+++.+++...
T Consensus 220 ~~--~~~~~it~~~v~~~~~~~ 239 (340)
T 1sxj_C 220 DN--PDEDEISDDVIYECCGAP 239 (340)
T ss_dssp CS--SSCCCBCHHHHHHHTTCC
T ss_pred CC--cccccccHHHHHHHhCCC
Confidence 10 011258888887766543
No 134
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=1.1e-12 Score=148.04 Aligned_cols=200 Identities=16% Similarity=0.201 Sum_probs=138.3
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc------CCcEEEEeccccccc-
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS------GVNLFTVNGPEVVSQ- 368 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l------~~~~i~i~~~~l~~~- 368 (957)
+++.|.+++++.|.+.+..... -..+..++|+||||||||++++++++.+ +..++.++|......
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 91 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPY 91 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHH
Confidence 5789999999998887533211 1456789999999999999999999988 888999997643211
Q ss_pred ---------------ccch-hHHHHHHHHHHHhcc-CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCC
Q 002169 369 ---------------NYGE-SEQALHEVFDSASQS-APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDG 431 (957)
Q Consensus 369 ---------------~~ge-~e~~i~~vf~~a~~~-~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~ 431 (957)
..+. .......+++..... .|.||+|||++.+..... ...+..|+..++.+ ...+
T Consensus 92 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~-~~~~ 163 (386)
T 2qby_A 92 RVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV-NKSK 163 (386)
T ss_dssp HHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC-CC--
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc-CCCe
Confidence 0111 222344444444433 389999999999865431 12445566666554 3457
Q ss_pred eEEEEecCCC---CCchhhhhCCCCcc-eeeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHHHcC---CCcHHH
Q 002169 432 VLVIAATNRP---DSIEPALRRPGRLD-REIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSMATH---GFVGAD 502 (957)
Q Consensus 432 v~vI~ttN~~---~~ld~al~r~gRfd-~~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~~t~---g~~gaD 502 (957)
+.+|+++|.+ +.+++.+.+ ||. +.+.++.++.++..++++..+.. ....+++..++.++..+. |. .+.
T Consensus 164 ~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~-~r~ 240 (386)
T 2qby_A 164 ISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGD-ARR 240 (386)
T ss_dssp EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCC-HHH
T ss_pred EEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCC-HHH
Confidence 8999999987 456777777 664 47999999999999999987653 134567888888888776 54 445
Q ss_pred HHHHHHHHHHHH
Q 002169 503 LAALCNEAALVC 514 (957)
Q Consensus 503 i~~l~~~A~~~a 514 (957)
+..+++.|...+
T Consensus 241 ~~~ll~~a~~~a 252 (386)
T 2qby_A 241 ALDLLRVSGEIA 252 (386)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555777765544
No 135
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.47 E-value=7.8e-13 Score=149.24 Aligned_cols=186 Identities=20% Similarity=0.271 Sum_probs=137.6
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc---------------
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--------------- 356 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--------------- 356 (957)
...++++.|.+.+++.|.+.+... ..+..++|+||+|||||++|+++|+.++..
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 346778999999999998886422 224578999999999999999999987542
Q ss_pred ---------EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHh
Q 002169 357 ---------LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLM 423 (957)
Q Consensus 357 ---------~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~l 423 (957)
++.+++..- .....++.+++.+. ...+.||+|||+|.+.. ...+.|+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll~~l 143 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLKTL 143 (373)
T ss_dssp HHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHHHHH
T ss_pred HHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHHHHH
Confidence 233333210 01123455666554 23478999999998832 2345677777
Q ss_pred hccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHH
Q 002169 424 DGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADL 503 (957)
Q Consensus 424 d~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi 503 (957)
+.. ..++++|++|+.++.+.+.+++ |+ ..+.++.|+.++..++++..+...+..+++..++.++..+.| ..+++
T Consensus 144 e~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~ 217 (373)
T 1jr3_A 144 EEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDA 217 (373)
T ss_dssp HSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHH
T ss_pred hcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHH
Confidence 763 4578999999998899999988 66 568999999999999999988777777788889999999877 55666
Q ss_pred HHHHHHHH
Q 002169 504 AALCNEAA 511 (957)
Q Consensus 504 ~~l~~~A~ 511 (957)
.++++.+.
T Consensus 218 ~~~l~~~~ 225 (373)
T 1jr3_A 218 LSLTDQAI 225 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776653
No 136
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=5.9e-13 Score=146.91 Aligned_cols=176 Identities=16% Similarity=0.217 Sum_probs=132.8
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~ 366 (957)
+..++++.|.+.+++.|.+.+... . ..+++|+||||+|||++|+++++.+ +..++.+++.+..
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~-----------~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDG-----------N-MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR 84 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSC-----------C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcC-----------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc
Confidence 345778999999999988885321 1 2249999999999999999999886 3457888876532
Q ss_pred ccccchhHHHHHHHHHHHh-------ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 367 SQNYGESEQALHEVFDSAS-------QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~-------~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
+ ...++.+++... ...+.||+|||+|.+.. .....|+..++.. ..++.+|++||
T Consensus 85 ~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~il~~~ 145 (323)
T 1sxj_B 85 G------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----------GAQQALRRTMELY--SNSTRFAFACN 145 (323)
T ss_dssp S------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------HHHHTTHHHHHHT--TTTEEEEEEES
T ss_pred C------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------HHHHHHHHHHhcc--CCCceEEEEeC
Confidence 2 234445555433 23478999999998843 2234566777653 45788899999
Q ss_pred CCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHH
Q 002169 440 RPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGA 501 (957)
Q Consensus 440 ~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ga 501 (957)
.++.+.+++++ |+. .+.++.|+.++..++++..+...+..+++..++.++..+.|....
T Consensus 146 ~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~ 204 (323)
T 1sxj_B 146 QSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQ 204 (323)
T ss_dssp CGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHH
T ss_pred ChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Confidence 99999999998 664 699999999999999999887766677888999999988775443
No 137
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=9.9e-13 Score=145.38 Aligned_cols=187 Identities=17% Similarity=0.211 Sum_probs=135.0
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-----~~~i~i~~~~l~ 366 (957)
...|+++.|.+.+++.|..++... ...+++|+||||||||++|+++++.+. ..++.+++++..
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER 88 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC
Confidence 346788999999999998876432 223699999999999999999998863 347788876543
Q ss_pred ccccchhHHHHHHHHHHH-h-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 367 SQNYGESEQALHEVFDSA-S-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a-~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
+. ......+....... . ...+.||+|||+|.+.+ .....|+..++.. ..++.+|+++|.++.+
T Consensus 89 ~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 89 GI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMF--SSNVRFILSCNYSSKI 153 (327)
T ss_dssp HH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHT--TTTEEEEEEESCGGGS
T ss_pred ch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----------HHHHHHHHHHHhc--CCCCeEEEEeCCcccc
Confidence 21 11112222221111 1 14578999999998842 2345677777763 4568899999999999
Q ss_pred hhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHH
Q 002169 445 EPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNE 509 (957)
Q Consensus 445 d~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~ 509 (957)
.+++++ |+. .+.++.++.++..++++..+...+..+++..++.++..+.|.. +.+.++++.
T Consensus 154 ~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~-r~~~~~l~~ 214 (327)
T 1iqp_A 154 IEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDM-RRAINILQA 214 (327)
T ss_dssp CHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred CHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCH-HHHHHHHHH
Confidence 999988 775 6899999999999999999888887788999999999887643 333444443
No 138
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.46 E-value=4e-13 Score=150.36 Aligned_cols=202 Identities=17% Similarity=0.182 Sum_probs=127.9
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEE----Eeccccc-
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFT----VNGPEVV- 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~----i~~~~l~- 366 (957)
..+|+++.|.+..++.+...... ....++||+||||||||++|++++..++..... ++|....
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 87 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVD------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEM 87 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHC------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGG
T ss_pred CCCchhccChHHHHHHHHHHhhC------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccccc
Confidence 45688899999876654332111 123469999999999999999999988631110 1111110
Q ss_pred --------------------ccccchhHHH------HHHHHHHHh---------ccCCeEEEEcCccccccCCcCCCchH
Q 002169 367 --------------------SQNYGESEQA------LHEVFDSAS---------QSAPAVVFIDELDAIAPARKDGGEEL 411 (957)
Q Consensus 367 --------------------~~~~ge~e~~------i~~vf~~a~---------~~~p~IL~IDEiD~l~~~~~~~~~~~ 411 (957)
....+.++.. +...+.... ...++||||||+|.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~--------- 158 (350)
T 1g8p_A 88 IPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED--------- 158 (350)
T ss_dssp SCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH---------
T ss_pred ccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH---------
Confidence 0001111111 111222210 11367999999998842
Q ss_pred HHHHHHHHHHHhhcc----c-------cCCCeEEEEecCCCC-CchhhhhCCCCcceeeeecCC-CHHHHHHHHHHHH--
Q 002169 412 SQRMVATLLNLMDGV----C-------RTDGVLVIAATNRPD-SIEPALRRPGRLDREIEIAVP-SPAQRLEILHALL-- 476 (957)
Q Consensus 412 ~~~i~~~Ll~~ld~l----~-------~~~~v~vI~ttN~~~-~ld~al~r~gRfd~~I~i~~P-~~~~r~~Il~~~l-- 476 (957)
.....|+..|+.- . ...++++|+++|+.+ .+++++++ ||+..+.++.| +.+++.+|++..+
T Consensus 159 --~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~~ 234 (350)
T 1g8p_A 159 --HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDTY 234 (350)
T ss_dssp --HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHhc
Confidence 3445677766641 1 123689999999855 89999999 99888999999 6777778886521
Q ss_pred ---------------------------cCCCCCCChHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHHHh
Q 002169 477 ---------------------------SGMEHSLLDSEVEYLSMATHGF---VGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 477 ---------------------------~~~~~~l~~~~l~~La~~t~g~---~gaDi~~l~~~A~~~a~rr~ 518 (957)
......+++..++.++....+. +.+.+..+++.|...|..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~ 306 (350)
T 1g8p_A 235 DADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEG 306 (350)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTT
T ss_pred ccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcC
Confidence 1123467888888888876543 45888888888877765443
No 139
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.46 E-value=4.3e-12 Score=143.72 Aligned_cols=200 Identities=14% Similarity=0.130 Sum_probs=140.7
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCC--eEEEEcCCCChHHHHHHHHHHHc----CCcEEEEecccccccc
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTK--GVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQN 369 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~--~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~~~l~~~~ 369 (957)
+++.|.+.+++.|.+.+...... ..+. .++|+||||||||++++++++.+ +..++.++|.......
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 88 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT 88 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH
Confidence 57899999999999887544221 2334 89999999999999999999988 5678899976543210
Q ss_pred ----------------cch-hHHHHHHHHHHHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcccc--C
Q 002169 370 ----------------YGE-SEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCR--T 429 (957)
Q Consensus 370 ----------------~ge-~e~~i~~vf~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~--~ 429 (957)
.+. .......+.+... ...|.||+|||+|.+ .......|+.+++.... .
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~~~~~~~L~~~~~~~~~~~~ 157 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------APDILSTFIRLGQEADKLGA 157 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------CHHHHHHHHHHTTCHHHHSS
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------chHHHHHHHHHHHhCCCCCc
Confidence 011 1112222222222 245889999999988 13456667777766532 2
Q ss_pred CCeEEEEecCCC---CCchhhhhCCCCcce-eeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHHHcC-------
Q 002169 430 DGVLVIAATNRP---DSIEPALRRPGRLDR-EIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSMATH------- 496 (957)
Q Consensus 430 ~~v~vI~ttN~~---~~ld~al~r~gRfd~-~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~~t~------- 496 (957)
.++.+|+++|.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. ....+++..++.++..+.
T Consensus 158 ~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (389)
T 1fnn_A 158 FRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDT 235 (389)
T ss_dssp CCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCT
T ss_pred CCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCC
Confidence 578999999987 567777777 7764 6999999999999999987754 233568889999999984
Q ss_pred -CCcHHHHHHHHHHHHHHHHH
Q 002169 497 -GFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 497 -g~~gaDi~~l~~~A~~~a~r 516 (957)
+-..+.+..+++.|...+..
T Consensus 236 ~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 236 NRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp TSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHH
Confidence 22456677788777666543
No 140
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.45 E-value=4.7e-14 Score=184.79 Aligned_cols=171 Identities=15% Similarity=0.171 Sum_probs=99.6
Q ss_pred HHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHH-----------------HhchhhcHHHHHhc---CCCCCCcc
Q 002169 624 ARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEA-----------------VEWPQKHQEAFKRI---GTRPPTGI 683 (957)
Q Consensus 624 a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~-----------------i~~~~~~~~~~~~l---~~~~~~gi 683 (957)
++....|+++++...++|+++|++--....+.+.+... ..++...+++-.-+ |+.+..-+
T Consensus 656 a~~~~~ps~L~e~~~~~~~v~~~~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~li 735 (2050)
T 3cmu_A 656 NSTTGSTGSMGHTTGAMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIV 735 (2050)
T ss_dssp CC----------------CCSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSEE
T ss_pred hcccCCHHHHHhhhccccCCcHHHHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCcEE
Confidence 44556788899999999999998532333333333221 11233334455555 47778889
Q ss_pred eeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc----cc--------chHHHHHHHHHHHHh----CCCeEEE
Q 002169 684 LMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW----VG--------ESEKAVRSLFAKARA----NAPSIIF 744 (957)
Q Consensus 684 LL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~----vg--------~~~~~ir~~f~~A~~----~~p~ILf 744 (957)
+|+|+||+|||+||..+|..+ +.+++.+++.+....+ .| ..+..+..+++.++. ..|++|+
T Consensus 736 lIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LVI 815 (2050)
T 3cmu_A 736 EIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIV 815 (2050)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCCEEE
Confidence 999999999999999998876 4568888887765543 12 111224445555444 6799999
Q ss_pred EeCCchhhh-hc--CCCCC-CCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 745 FDEIDGLAA-IR--GKESD-GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 745 iDEid~l~~-~r--~~~~~-~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
||.+..+.. .. +..++ ......|.+++++..|..+....++.||++.+-.
T Consensus 816 IDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~ 869 (2050)
T 3cmu_A 816 VDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 869 (2050)
T ss_dssp ESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCE
T ss_pred EcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecccc
Confidence 999999875 22 11111 1134467789999999988888888888877643
No 141
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.45 E-value=6.3e-13 Score=143.38 Aligned_cols=195 Identities=18% Similarity=0.199 Sum_probs=117.6
Q ss_pred ccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC---CcEEEEeCCCcccc
Q 002169 643 VKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPELFSK 719 (957)
Q Consensus 643 v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~---~~~i~v~~~~l~~~ 719 (957)
.+|++++|++...+.+.+.+... ...+.+++|+||||||||++|++++..+. .+|+.++++.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~-----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 46889999999988887776532 12356899999999999999999999874 68999998876321
Q ss_pred c-----ccchH----HH---HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-------
Q 002169 720 W-----VGESE----KA---VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------- 780 (957)
Q Consensus 720 ~-----vg~~~----~~---ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~------- 780 (957)
. .|... .. ....|..+. ..+|||||++.+. ..++..|+..|+...
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a~---~~~l~lDEi~~l~-------------~~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP-------------MMVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHTT---TSEEEEESGGGSC-------------HHHHHHHHHHHHHCEECCCCC-
T ss_pred HHHHHhcCCcccccccccccccchhhhcC---CcEEEEechHhcC-------------HHHHHHHHHHHHhCCeecCCCc
Confidence 1 11100 00 112333333 4599999999763 345667777777421
Q ss_pred --cCCcEEEEEecCCC-------CCCChhhhCCCCcce-ecccCCCCH--HHHHHHHHHHH----hcCCCCC--ccc---
Q 002169 781 --QRVNVTVIAATNRP-------DKIDPALLRPGRFDR-LLYVGPPNE--TDREEIFRIHL----RKIPCSS--DVN--- 839 (957)
Q Consensus 781 --~~~~v~VI~aTN~~-------~~id~aLlr~gRfd~-~i~~~~P~~--~er~~Il~~~l----~~~~~~~--~~~--- 839 (957)
...++.+|++||.+ ..++++|.+ ||.. .+.+|+... ++...+++.++ ...+... ...
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a 213 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERA 213 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHH
Confidence 12467899999975 246788888 8852 344544433 33344444333 3333321 223
Q ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHH
Q 002169 840 IRELACLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 840 l~~la~~t~g~sg~dl~~l~~eA~~~a 866 (957)
+..+.......+.++++++++.++..+
T Consensus 214 ~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 214 RETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 344444432236789999999887655
No 142
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=1.1e-12 Score=147.28 Aligned_cols=187 Identities=16% Similarity=0.204 Sum_probs=128.9
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc-CC---------------
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS-GV--------------- 355 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l-~~--------------- 355 (957)
+.+++++.|.+.+++.++..+. ......+++|+||+||||||+++++|+.+ +.
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~-----------~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~ 78 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSD-----------QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA 78 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTT-----------CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------
T ss_pred CCCHHHhcCCHHHHHHHHHHHh-----------hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc
Confidence 4567889999998888877631 11122349999999999999999999954 21
Q ss_pred -------------cEEEEecccccccccchhHHHHHHHHHHHh--------------ccCCeEEEEcCccccccCCcCCC
Q 002169 356 -------------NLFTVNGPEVVSQNYGESEQALHEVFDSAS--------------QSAPAVVFIDELDAIAPARKDGG 408 (957)
Q Consensus 356 -------------~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~--------------~~~p~IL~IDEiD~l~~~~~~~~ 408 (957)
.++.+++.+.. ......++..++.+. ...|.|++|||++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~------- 147 (354)
T 1sxj_E 79 SNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT------- 147 (354)
T ss_dssp -------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-------
T ss_pred ccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-------
Confidence 12223222110 001113445554432 2357899999998863
Q ss_pred chHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCC-hHH
Q 002169 409 EELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLL-DSE 487 (957)
Q Consensus 409 ~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~-~~~ 487 (957)
....+.|+..|+.. ..++.+|++||.++.+.+++++ |+ ..+.|+.|+.++..++++..+...+..++ +..
T Consensus 148 ----~~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (354)
T 1sxj_E 148 ----KDAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDI 218 (354)
T ss_dssp ----HHHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHH
T ss_pred ----HHHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 23345677777764 3468899999999999999998 77 66999999999999999998877777778 888
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHH
Q 002169 488 VEYLSMATHGFVGADLAALCNEA 510 (957)
Q Consensus 488 l~~La~~t~g~~gaDi~~l~~~A 510 (957)
++.++..+.|- .+++..+++.+
T Consensus 219 l~~i~~~~~G~-~r~a~~~l~~~ 240 (354)
T 1sxj_E 219 LKRIAQASNGN-LRVSLLMLESM 240 (354)
T ss_dssp HHHHHHHHTTC-HHHHHHHHTHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHHH
Confidence 99999888764 34444444433
No 143
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=8.1e-14 Score=167.37 Aligned_cols=221 Identities=20% Similarity=0.201 Sum_probs=139.9
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEE----eCCCcccccc
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAV----KGPELFSKWV 721 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v----~~~~l~~~~v 721 (957)
..|+|++.+|+.+.-++... .+....+...+...++||+||||||||++|+++|+.++..++.. .+.++....+
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 46889999988775443221 00000001123344799999999999999999999987665442 2223322211
Q ss_pred cch-HH---HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-----------cCCcEE
Q 002169 722 GES-EK---AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-----------QRVNVT 786 (957)
Q Consensus 722 g~~-~~---~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v~ 786 (957)
... .. .....+..|.. .|+||||+|.+. ....+.|+..|+... ...++.
T Consensus 373 ~~~~~g~~~~~~G~l~~A~~---gil~IDEid~l~-------------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLADG---GIAVIDEIDKMR-------------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp SGGGTSSCSEEECHHHHHSS---SEECCTTTTCCC-------------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred eccccccccccCCeeEecCC---CcEEeehhhhCC-------------HhHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 110 00 00123444544 499999999762 345667888887432 123678
Q ss_pred EEEecCCCC-------------CCChhhhCCCCccee-cccCCCCHHHHHHHHHHHHhcCC-------------------
Q 002169 787 VIAATNRPD-------------KIDPALLRPGRFDRL-LYVGPPNETDREEIFRIHLRKIP------------------- 833 (957)
Q Consensus 787 VI~aTN~~~-------------~id~aLlr~gRfd~~-i~~~~P~~~er~~Il~~~l~~~~------------------- 833 (957)
||+|||..+ .+++++++ |||.. +..+.|+.+ ...|.+..+....
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ 513 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAY 513 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHH
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHH
Confidence 999999886 89999999 99854 445666666 7777776664322
Q ss_pred -------CCCcccHHHHHHH--------------ccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 834 -------CSSDVNIRELACL--------------SEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 834 -------~~~~~~l~~la~~--------------t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
...+...+.+... ..+.|.|.+..+++-|...|..+. ...|+.+|+.+|+.-+.
T Consensus 514 ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~--~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 514 ARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL--KAEVTREDAERAINIMR 588 (595)
T ss_dssp HHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS--SCCSSHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC--cCCCCHHHHHHHHHHHH
Confidence 1112223334433 346789999999998887776654 67899999999987543
No 144
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.40 E-value=1e-12 Score=141.71 Aligned_cols=194 Identities=17% Similarity=0.143 Sum_probs=120.6
Q ss_pred cccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---CcEEEEeccccccccc
Q 002169 294 DISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---VNLFTVNGPEVVSQNY 370 (957)
Q Consensus 294 ~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~---~~~i~i~~~~l~~~~~ 370 (957)
+|+++.|.+..+..+.+.+.... ..+.+++|+||||||||++|++++..+. .+++.++|+.+.....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~ 73 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHH
Confidence 56788899988888877764431 2357899999999999999999998875 6799999987633211
Q ss_pred -----chhH----H---HHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc---------cC
Q 002169 371 -----GESE----Q---ALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---------RT 429 (957)
Q Consensus 371 -----ge~e----~---~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~---------~~ 429 (957)
|... . .....|+.+ .+.+|||||+|.+.. .....|+..|+.-. ..
T Consensus 74 ~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~ 139 (265)
T 2bjv_A 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM-----------MVQEKLLRVIEYGELERVGGSQPLQ 139 (265)
T ss_dssp HHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH-----------HHHHHHHHHHHHCEECCCCC--CEE
T ss_pred HHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH-----------HHHHHHHHHHHhCCeecCCCccccc
Confidence 1000 0 001123333 346999999998842 34456777776421 12
Q ss_pred CCeEEEEecCCC-------CCchhhhhCCCCcceeeeecCCCHHHH----HHHHHHHHc----CCCC----CCChHHHHH
Q 002169 430 DGVLVIAATNRP-------DSIEPALRRPGRLDREIEIAVPSPAQR----LEILHALLS----GMEH----SLLDSEVEY 490 (957)
Q Consensus 430 ~~v~vI~ttN~~-------~~ld~al~r~gRfd~~I~i~~P~~~~r----~~Il~~~l~----~~~~----~l~~~~l~~ 490 (957)
.++.+|++||.. ..+.+++.+ ||.. +.+..|...+| ..+++.++. ..+. .+++..++.
T Consensus 140 ~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~ 216 (265)
T 2bjv_A 140 VNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARET 216 (265)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHH
T ss_pred CCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHH
Confidence 467899999974 135567766 7753 45555655544 334333322 2222 567888888
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Q 002169 491 LSMATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 491 La~~t~g~~gaDi~~l~~~A~~~a 514 (957)
|....-....+++.++++.+...+
T Consensus 217 L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 217 LLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHHHhC
Confidence 877654556788888888876543
No 145
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.39 E-value=9.1e-11 Score=159.58 Aligned_cols=354 Identities=17% Similarity=0.182 Sum_probs=179.5
Q ss_pred CCCeEEEEcCCCChHHHHHHH-HHHHcCCcEEEEecccccccccchhHHHHHHHHHHH----h------------ccCCe
Q 002169 328 PTKGVLLHGPPGTGKTSLARL-CAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSA----S------------QSAPA 390 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLara-lA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a----~------------~~~p~ 390 (957)
.+++|||+||||||||++++. ++...+..++.++++.-.. ...+...++.. . .++..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 467899999999999987755 4444455677888766433 22333344321 0 02235
Q ss_pred EEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc-------ccCCCeEEEEecCCC-----CCchhhhhCCCCcceee
Q 002169 391 VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-------CRTDGVLVIAATNRP-----DSIEPALRRPGRLDREI 458 (957)
Q Consensus 391 IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l-------~~~~~v~vI~ttN~~-----~~ld~al~r~gRfd~~I 458 (957)
|+||||++.-. .+..+......++.++++.-.-+ ..-.++.+|+|+|++ ..+++++.| ||.. +
T Consensus 1377 VlFiDDiNmp~--~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i 1451 (3245)
T 3vkg_A 1377 VVFCDEINLPS--TDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAPI-L 1451 (3245)
T ss_dssp EEEETTTTCCC--CCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCCE-E
T ss_pred EEEecccCCCC--ccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hceE-E
Confidence 99999998643 33344434444444444321101 122468899999988 469999999 8854 8
Q ss_pred eecCCCHHHHHHHHHHHHcCCCCCCC------hHHHHHH-------HH-------HcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 459 EIAVPSPAQRLEILHALLSGMEHSLL------DSEVEYL-------SM-------ATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 459 ~i~~P~~~~r~~Il~~~l~~~~~~l~------~~~l~~L-------a~-------~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
.++.|+.+....|+..++..+....+ +...... .. ...-|+.+|+..+++.-... ....
T Consensus 1452 ~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~-~~~~ 1530 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEA-IQTM 1530 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHH-HHTS
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHh-cCcc
Confidence 99999999999998776543221111 1111111 11 12457899999988754332 2111
Q ss_pred cc---ccccccccccccccccccCCCccccccccccccccccccccccCCCCCCCCCCcccccCCcchhhcHHHHHhhcc
Q 002169 519 SK---IQTSSDVLHSTGTLFEFEGHSDTMLQDSDCSRNITESSRDCLDSASPCTSDLPTSLLSSSLPLRGTVSEIADNFH 595 (957)
Q Consensus 519 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (957)
.. ..-...+.|++.++| .|..++.-| . .++ ...+.+.....-
T Consensus 1531 ~~~~~~~lvrLW~HE~~RVF-------------------~DRLv~~~D-------------r-~~f--~~~l~~~~~~~F 1575 (3245)
T 3vkg_A 1531 DGCTLEGLVRLWAHEALRLF-------------------QDRLVETEE-------------K-EWT--DKKIDEVALKHF 1575 (3245)
T ss_dssp SCCCTTHHHHHHHHHHHHHH-------------------TTTCSSHHH-------------H-HHH--HHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHHH-------------------HHHcCCHHH-------------H-HHH--HHHHHHHHHHhc
Confidence 10 000123556655555 111111100 0 000 001111110000
Q ss_pred cCCCC--CCCCCcccccc--ccccccHHHHHHHHHhcCchhhhhHHhhcCCccccccCChHHHHHHHHHHHhchhhcHHH
Q 002169 596 NGVSD--SSGGMFMSEKG--CALKLELVDFEKARMKVRPSAMREVILEVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEA 671 (957)
Q Consensus 596 ~~~~~--~~~~~~~~e~~--~~~~v~~~df~~a~~~~~ps~~~~~~~e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~ 671 (957)
....+ ..+..+..... ....++.+++...+.. .+.+...+. .. -+++--+++.+-+.+.
T Consensus 1576 ~~~~~~~~~~pllf~~f~~~~Y~~v~~~~l~~~l~~----~L~~yn~~~--~~-m~LVlF~daleHv~RI---------- 1638 (3245)
T 3vkg_A 1576 PSVNLDALKRPILYSNWLTKDYQPVNRSDLREYVKA----RLKVFYEEE--LD-VPLVLFNEVLDHILRI---------- 1638 (3245)
T ss_dssp TTSCGGGGCSSCCCCSSCC----CCCHHHHHHHHHH----HHHTTC---------CCCCCHHHHHHHHHH----------
T ss_pred CcchhhhcccCcchhhhccccCccCCHHHHHHHHHH----HHHHHHhcc--cC-ceEEeHHHHHHHHHHH----------
Confidence 00000 00000000000 0011222222221110 010000000 00 1222223333322222
Q ss_pred HHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHH-hCCCeEEEEeCC
Q 002169 672 FKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKAR-ANAPSIIFFDEI 748 (957)
Q Consensus 672 ~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~-~~~p~ILfiDEi 748 (957)
.++=..|..++||+|..|+||++++|..|...+..++.+....-++ ..+....++.++.+|- .+.|.+++|+|-
T Consensus 1639 -~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~ 1713 (3245)
T 3vkg_A 1639 -DRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNYK--SSDFDDDLRMLLKRAGCKEEKICFIFDES 1713 (3245)
T ss_dssp -HHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----CC--HHHHHHHHHHHHHHHHTSCCCEEEEEEGG
T ss_pred -HHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCCCC--HHHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 2222356677999999999999999999999999998877654322 3567788899998884 566888888873
No 146
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.39 E-value=1.8e-11 Score=165.87 Aligned_cols=129 Identities=19% Similarity=0.299 Sum_probs=92.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG 407 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~ 407 (957)
...++++.||+|||||++++++|+.+|.+++.++|.+-+. ...+..+|..+... ++++++||++.+.+
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~----- 711 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRLDE----- 711 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCH-----
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhcCh-----
Confidence 3578999999999999999999999999999999987544 23456677666543 37999999988743
Q ss_pred CchHHHHHHHHHHHHhhcc--------------ccCCCeEEEEecCC----CCCchhhhhCCCCcceeeeecCCCHHHHH
Q 002169 408 GEELSQRMVATLLNLMDGV--------------CRTDGVLVIAATNR----PDSIEPALRRPGRLDREIEIAVPSPAQRL 469 (957)
Q Consensus 408 ~~~~~~~i~~~Ll~~ld~l--------------~~~~~v~vI~ttN~----~~~ld~al~r~gRfd~~I~i~~P~~~~r~ 469 (957)
+.-..+..++....+.+ .-.....|++|.|+ ...+++++++ || +.+.+..|+.+...
T Consensus 712 --evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ 786 (2695)
T 4akg_A 712 --KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIA 786 (2695)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHH
Confidence 12222222222222211 22345678889984 3479999998 88 56999999999888
Q ss_pred HHHH
Q 002169 470 EILH 473 (957)
Q Consensus 470 ~Il~ 473 (957)
+|+-
T Consensus 787 ei~l 790 (2695)
T 4akg_A 787 EMIL 790 (2695)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8854
No 147
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.39 E-value=1.3e-12 Score=153.22 Aligned_cols=196 Identities=17% Similarity=0.116 Sum_probs=124.6
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEecc-----cccccc
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGP-----EVVSQN 369 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~~~-----~l~~~~ 369 (957)
.+.|.++.++.+...+. .+.+|||+||||||||++|+++|..++. +|..+++. ++++.+
T Consensus 23 ~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 47888888776654421 2468999999999999999999998843 45555542 333332
Q ss_pred cchhHHHHHHHHHHHhcc---CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--------ccCCCeEEEEec
Q 002169 370 YGESEQALHEVFDSASQS---APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--------CRTDGVLVIAAT 438 (957)
Q Consensus 370 ~ge~e~~i~~vf~~a~~~---~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--------~~~~~v~vI~tt 438 (957)
.+..... ...|..+... .++||||||++.+. ..+...|+..|+.- ...+..++|++|
T Consensus 89 ~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~AT 156 (500)
T 3nbx_X 89 SIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAAS 156 (500)
T ss_dssp C-----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEE
T ss_pred cHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhcc
Confidence 2221111 1223222222 46799999998652 34567788888642 111223568888
Q ss_pred CCCCC---chhhhhCCCCcceeeeecCCCH-HHHHHHHHHHHcCC-----------------------CCCCChHHHHHH
Q 002169 439 NRPDS---IEPALRRPGRLDREIEIAVPSP-AQRLEILHALLSGM-----------------------EHSLLDSEVEYL 491 (957)
Q Consensus 439 N~~~~---ld~al~r~gRfd~~I~i~~P~~-~~r~~Il~~~l~~~-----------------------~~~l~~~~l~~L 491 (957)
|++.. ..+++.+ ||...+.++.|+. +++.+|++...... ...+++..++.+
T Consensus 157 N~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i 234 (500)
T 3nbx_X 157 NELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELI 234 (500)
T ss_dssp SSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHH
T ss_pred ccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHH
Confidence 86433 4458888 9988899999987 77888887643211 334566666666
Q ss_pred HHHc---------CCCcHHHHHHHHHHHHHHHHHHhcc
Q 002169 492 SMAT---------HGFVGADLAALCNEAALVCLRRYSK 520 (957)
Q Consensus 492 a~~t---------~g~~gaDi~~l~~~A~~~a~rr~~~ 520 (957)
+... .|.+.+.+..+++.|...|..+.+.
T Consensus 235 ~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~ 272 (500)
T 3nbx_X 235 FMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRS 272 (500)
T ss_dssp HHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 6554 4778888888888887777655543
No 148
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.38 E-value=1.9e-11 Score=160.55 Aligned_cols=116 Identities=23% Similarity=0.302 Sum_probs=84.7
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc----c------------ccchHHHHHHHHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK----W------------VGESEKAVRSLFAKAR 736 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~----~------------vg~~~~~ir~~f~~A~ 736 (957)
|++++++++|+||||||||+||.+++.+. |.....++..+.+.. . ....++.++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 37888899999999999999999998775 445556665543211 1 1245677788888899
Q ss_pred hCCCeEEEEeCCchhhhhc---CCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEec
Q 002169 737 ANAPSIIFFDEIDGLAAIR---GKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAAT 791 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~~r---~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aT 791 (957)
..+|++|||||++.+.+.. +..+++ .....|+++++|.+|.+.....+++||++-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 9999999999999887642 222221 122478999999999988777777776653
No 149
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.36 E-value=5e-13 Score=131.08 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=83.0
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccc
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGE 723 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~ 723 (957)
+++|.+...+.+.+.+... .....+++|+||||||||++|++|+... +.+|+ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 5778888888887776532 2345679999999999999999999986 77999 999877544
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 724 SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 724 ~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
......|+.+..+ +|||||+|.+. ...+..|+..|... ..++.+|++||.+
T Consensus 66 --~~~~~~~~~a~~g---~l~ldei~~l~-------------~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQGG---TLVLSHPEHLT-------------REQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHTTS---CEEEECGGGSC-------------HHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred --hhhhcHHHHcCCc---EEEEcChHHCC-------------HHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 2345567777554 99999999773 34556677777533 4467899999975
No 150
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.36 E-value=8.7e-12 Score=139.49 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=115.9
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCC------------------------cEEEEeCCCcccccccchHHHHHHHHH
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGL------------------------NFLAVKGPELFSKWVGESEKAVRSLFA 733 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~------------------------~~i~v~~~~l~~~~vg~~~~~ir~~f~ 733 (957)
+.+..+||+||+|||||++|+++|+.+.. .++.+.+.+- + .......+|.+++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~--~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-K--NTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-C--SSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-C--CCCCHHHHHHHHH
Confidence 45667999999999999999999998743 2444443210 0 0123456778877
Q ss_pred HHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcce
Q 002169 734 KARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDR 809 (957)
Q Consensus 734 ~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~ 809 (957)
.+.. +...|++|||+|.+. ....+.|+..|+. +..++++|++||.++.+.+++++ |+ .
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~-------------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc-~ 160 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT-------------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RC-R 160 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC-------------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TS-E
T ss_pred HHhhccccCCcEEEEECchhhcC-------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cc-e
Confidence 7653 346899999999773 3456788998885 34578999999999999999999 87 4
Q ss_pred ecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHH
Q 002169 810 LLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREA 862 (957)
Q Consensus 810 ~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA 862 (957)
.+.|++|+.++..++++... .+ ++..+..+++.+.| +.+++.++++.+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 79999999999998888765 22 33456778888877 666666655543
No 151
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.34 E-value=1.5e-12 Score=157.06 Aligned_cols=215 Identities=20% Similarity=0.294 Sum_probs=137.3
Q ss_pred hcCCccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC---cEEEEeCCC
Q 002169 639 EVPKVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL---NFLAVKGPE 715 (957)
Q Consensus 639 e~p~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~---~~i~v~~~~ 715 (957)
..+...|++++|++.+++.+...+. ...+++|+|||||||||+|++||+.+.. ..+.+.+..
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred cccccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 4567788999999999988877764 2358999999999999999999998743 223232211
Q ss_pred cc--cc---c---------------------------------------------------ccchHHHH-----------
Q 002169 716 LF--SK---W---------------------------------------------------VGESEKAV----------- 728 (957)
Q Consensus 716 l~--~~---~---------------------------------------------------vg~~~~~i----------- 728 (957)
.- .. + +.+.....
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 10 00 0 00000000
Q ss_pred ---------------HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-------------
Q 002169 729 ---------------RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH------------- 780 (957)
Q Consensus 729 ---------------r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~------------- 780 (957)
...+..| .+.+|||||++.+ ...+++.|+..|+...
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a---~~gvL~LDEi~~l-------------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~ 242 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRA---HKGVLFIDEIATL-------------SLKMQQSLLTAMQEKKFPITGQSEMSSGA 242 (604)
T ss_dssp C----CCCCGGGGEECCHHHHT---TTSEEEETTGGGS-------------CHHHHHHHHHHHHHSEECCBCSCTTSGGG
T ss_pred hhcCCccccccccccCceeeec---CCCEEEEechhhC-------------CHHHHHHHHHHHHcCcEEecccccccccc
Confidence 1122222 3459999999976 2456677888777321
Q ss_pred ------cCCcEEEEEecCCC--CCCChhhhCCCCcc---eecccCCC---CHHHHHHHHHHHHhcC------CCCCcccH
Q 002169 781 ------QRVNVTVIAATNRP--DKIDPALLRPGRFD---RLLYVGPP---NETDREEIFRIHLRKI------PCSSDVNI 840 (957)
Q Consensus 781 ------~~~~v~VI~aTN~~--~~id~aLlr~gRfd---~~i~~~~P---~~~er~~Il~~~l~~~------~~~~~~~l 840 (957)
...++.||++||+. +.++++|++ ||+ ..++++.. ..+....+++...+.. ....+..+
T Consensus 243 ~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl 320 (604)
T 3k1j_A 243 MVRTEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAV 320 (604)
T ss_dssp GCBCSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHH
T ss_pred cCCCCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHH
Confidence 12368899999987 679999999 986 34555432 2344556655444321 11123334
Q ss_pred HHHHHHc---cCC------cHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhh
Q 002169 841 RELACLS---EGC------TGADISLICREAAISAIEENLDASRITMQHLKTAIRHV 888 (957)
Q Consensus 841 ~~la~~t---~g~------sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~ 888 (957)
..+.+.. .|- +.|++.++++.|...|..+. ...|+.+|+.+|+...
T Consensus 321 ~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~--~~~I~~edv~~A~~~~ 375 (604)
T 3k1j_A 321 EEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKG--KKYVEREDVIEAVKMA 375 (604)
T ss_dssp HHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTT--CSSBCHHHHHHHHHHT
T ss_pred HHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcC--cccccHHHHHHHHHhh
Confidence 5554433 442 68999999999987776554 6689999999999653
No 152
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=1.9e-11 Score=136.87 Aligned_cols=172 Identities=16% Similarity=0.207 Sum_probs=126.2
Q ss_pred cccccccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC-----CcEEEEeccccc
Q 002169 292 EQDISKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG-----VNLFTVNGPEVV 366 (957)
Q Consensus 292 ~~~~~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~-----~~~i~i~~~~l~ 366 (957)
...++++.|.+.+++.|...+... .. .+++|+|||||||||+|+++|+.+. ..+..+++++..
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g-----------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 88 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEG-----------KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR 88 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT-----------CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-----------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc
Confidence 456788999999988888775321 11 2499999999999999999999863 246777766532
Q ss_pred ccccchhHHHHHHHHHHHh------ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 367 SQNYGESEQALHEVFDSAS------QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 367 ~~~~ge~e~~i~~vf~~a~------~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
+ ...++..+.... ...+.|++|||+|.+.. ...+.|+..++.. ...+.+|+++|.
T Consensus 89 ~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~--~~~~~~il~~n~ 149 (340)
T 1sxj_C 89 G------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN-----------AAQNALRRVIERY--TKNTRFCVLANY 149 (340)
T ss_dssp S------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH-----------HHHHHHHHHHHHT--TTTEEEEEEESC
T ss_pred c------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhcC--CCCeEEEEEecC
Confidence 1 122333333222 12368999999998842 2345677777764 356788899999
Q ss_pred CCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 441 PDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 441 ~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
+..+.+++++ |+. .+.+..++.++..+++...+......+++..++.++..+.|
T Consensus 150 ~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 150 AHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp GGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred ccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999999 775 58899999999999999888776777788888888887765
No 153
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.31 E-value=6.3e-12 Score=138.80 Aligned_cols=189 Identities=25% Similarity=0.258 Sum_probs=122.2
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccccc---
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNY--- 370 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~--- 370 (957)
++.|.++.+..+.+.+... ...+.+|||+||||||||++|++++... +.+|+.++|..+.....
T Consensus 3 ~iig~s~~~~~~~~~~~~~----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~ 72 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESE 72 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHH
Confidence 4778888888887776443 1346789999999999999999999865 56899999987643210
Q ss_pred ----------chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc---------cCCC
Q 002169 371 ----------GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---------RTDG 431 (957)
Q Consensus 371 ----------ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~---------~~~~ 431 (957)
|... .....|+.+. .++|||||+|.+.. .....|+..|+... ...+
T Consensus 73 lfg~~~g~~tg~~~-~~~g~~~~a~---~g~L~LDEi~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 73 LFGHEKGAFTGADK-RREGRFVEAD---GGTLFLDEIGDISP-----------LMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HTCCCSSCCC---C-CCCCHHHHHT---TSEEEEESCTTCCH-----------HHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred hcCccccccCchhh-hhcCHHHhcC---CCEEEEeccccCCH-----------HHHHHHHHHHhcCEeeecCCcccccCC
Confidence 1000 1123444443 35999999998842 34556777776532 1245
Q ss_pred eEEEEecCCC-------CCchhhhhCCCCcceeeeecCCCHHHH----HHHHHHHHcC----C---CCCCChHHHHHHHH
Q 002169 432 VLVIAATNRP-------DSIEPALRRPGRLDREIEIAVPSPAQR----LEILHALLSG----M---EHSLLDSEVEYLSM 493 (957)
Q Consensus 432 v~vI~ttN~~-------~~ld~al~r~gRfd~~I~i~~P~~~~r----~~Il~~~l~~----~---~~~l~~~~l~~La~ 493 (957)
+.||++||.. ..+.+.+.. ||. .+.+..|...+| ..+++.++.. . ...+++..++.|..
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 8899999975 112334444 543 355666665544 3355444332 1 24568888888888
Q ss_pred HcCCCcHHHHHHHHHHHHHH
Q 002169 494 ATHGFVGADLAALCNEAALV 513 (957)
Q Consensus 494 ~t~g~~gaDi~~l~~~A~~~ 513 (957)
+.-.-+.+++.++++.|...
T Consensus 215 ~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 76445678888888877543
No 154
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.31 E-value=5.6e-13 Score=130.47 Aligned_cols=112 Identities=16% Similarity=0.254 Sum_probs=82.4
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHH
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEK 726 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~ 726 (957)
+++|.+...+.+.+.+... .....+++|+||||||||++|++++.... +|+.+++.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 5678888888888877532 13456799999999999999999999888 99999998764432
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 727 AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 727 ~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
.+..|+.+.. .+|||||+|.+. ...+..|+..|+... ..++.+|++||.+
T Consensus 67 -~~~~~~~a~~---~~l~lDei~~l~-------------~~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAEG---GVLYVGDIAQYS-------------RNIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTTT---SEEEEEECTTCC-------------HHHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred -hhhHHHhCCC---CeEEEeChHHCC-------------HHHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 4566776654 499999999773 334556677776542 3468899999865
No 155
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=5.8e-11 Score=131.00 Aligned_cols=142 Identities=11% Similarity=0.140 Sum_probs=108.5
Q ss_pred ChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh------CCcEEEEeCCCcccccccc
Q 002169 650 GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA------GLNFLAVKGPELFSKWVGE 723 (957)
Q Consensus 650 G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~------~~~~i~v~~~~l~~~~vg~ 723 (957)
|++++.+.+...+.. + + ...+|||||||||||++|+++|+.+ ..+++.+++.+- ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 677788888777753 1 2 4579999999999999999999864 457777776421 12
Q ss_pred hHHHHHHHHHHHHhCC----CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 724 SEKAVRSLFAKARANA----PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 724 ~~~~ir~~f~~A~~~~----p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
....+|.+++.+.... ..|+||||+|.+. ....+.|+..|+. +..++++|++||.++.+.+
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt-------------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT-------------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC-------------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhC-------------HHHHHHHHHHHhC--CCCCeEEEEEECChHhChH
Confidence 3456788888886432 4799999999773 4457789999985 3457888899999999999
Q ss_pred hhhCCCCcceecccCCCCHHHHHHHHHHHH
Q 002169 800 ALLRPGRFDRLLYVGPPNETDREEIFRIHL 829 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~P~~~er~~Il~~~l 829 (957)
++++ | ++.|++|+.++..+.++..+
T Consensus 128 tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9999 7 88999999999988888776
No 156
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.25 E-value=9.2e-11 Score=133.93 Aligned_cols=226 Identities=10% Similarity=0.083 Sum_probs=146.5
Q ss_pred cccccCChHHHHHHHHHHH-hchhhcHHHHHhcCC-CCCCccee--eCCCCChhhHHHHHHHHHh---------CCcEEE
Q 002169 644 KWEDVGGQREVKTQLMEAV-EWPQKHQEAFKRIGT-RPPTGILM--FGPPGCSKTLMARAVASEA---------GLNFLA 710 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i-~~~~~~~~~~~~l~~-~~~~giLL--~GPpGtGKTtlAkaiA~~~---------~~~~i~ 710 (957)
..++++|.++..+.+.+.+ ..... +. ..+..++| +||+|||||++++++++.+ +..++.
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 3477899999888888776 42111 10 23456888 9999999999999999876 456777
Q ss_pred EeCCCcccc---------c-------ccchHHH-HHHHHHHHH-hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHH
Q 002169 711 VKGPELFSK---------W-------VGESEKA-VRSLFAKAR-ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQL 772 (957)
Q Consensus 711 v~~~~l~~~---------~-------vg~~~~~-ir~~f~~A~-~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~L 772 (957)
+++...... . .+..... ...+..... ...|.||+|||+|.+...+. .....+..+
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-------~~~~~l~~l 164 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-------IAAEDLYTL 164 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-------SCHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-------cchHHHHHH
Confidence 775332110 0 0111112 222222222 35688999999998853210 123455555
Q ss_pred HHHHhcccc-C--CcEEEEEecCCCCC---CC---hhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCC---CCCcccH
Q 002169 773 LVELDGLHQ-R--VNVTVIAATNRPDK---ID---PALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIP---CSSDVNI 840 (957)
Q Consensus 773 L~~ld~~~~-~--~~v~VI~aTN~~~~---id---~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~---~~~~~~l 840 (957)
+..++.... . .++.+|++|+.++. ++ +.+.+ ||...+.+++++.++..++++..+.... ...+..+
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 566654321 2 57889989886652 34 66666 6655699999999999999987765321 1223446
Q ss_pred HHHHHHcc------CCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 841 RELACLSE------GCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 841 ~~la~~t~------g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
..++..+. | ..+.+..+++.|+..+..+. ...++.+++..++....
T Consensus 243 ~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~--~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 243 ELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMG--RDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTT--CSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHh
Confidence 77888888 7 67788899988887776543 45788899988876543
No 157
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.22 E-value=1.4e-11 Score=120.66 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=80.3
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchh
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGES 373 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~ 373 (957)
++.|.++.++.+.+.+... ...+.+|+|+||||||||++|++++... +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 4678888888877775433 1346789999999999999999999876 67888 999887554
Q ss_pred HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 374 EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 374 e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
......|+.+. .++|||||+|.+.+ .....|+..|.. ...++.+|++||.+
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~-----------~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTR-----------EQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCH-----------HHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCH-----------HHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 22344566654 35999999998842 334557777744 24467889999874
No 158
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.22 E-value=1.8e-10 Score=128.79 Aligned_cols=149 Identities=16% Similarity=0.219 Sum_probs=109.6
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCC------------------------cEEEEecccccccccchhHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGV------------------------NLFTVNGPEVVSQNYGESEQALHEVFDS 383 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~------------------------~~i~i~~~~l~~~~~ge~e~~i~~vf~~ 383 (957)
.+..+||+||||+|||++|+++|+.+.. .++.+++.+- +. .-....++.+++.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTEK 99 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHHH
Confidence 3557999999999999999999988753 2344443210 01 1123456777776
Q ss_pred Hhc----cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeee
Q 002169 384 ASQ----SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIE 459 (957)
Q Consensus 384 a~~----~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~ 459 (957)
+.. ..+.|++|||+|.+.. ...+.|+..|+. ...++++|++||.++.+.+++++ |+. .+.
T Consensus 100 ~~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~ 163 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR-LHY 163 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE-EEE
T ss_pred HhhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce-eee
Confidence 643 3468999999999842 235678888876 34578999999999999999999 764 599
Q ss_pred ecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcH
Q 002169 460 IAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVG 500 (957)
Q Consensus 460 i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~g 500 (957)
|+.|+.++..++++... .+++..++.++..+.|-.+
T Consensus 164 ~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r 199 (334)
T 1a5t_A 164 LAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPG 199 (334)
T ss_dssp CCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHH
T ss_pred CCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHH
Confidence 99999999999988764 4577778888888776443
No 159
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.19 E-value=1.5e-11 Score=120.29 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=81.6
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHH
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQA 376 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~ 376 (957)
++.|.++.++.+++.+.... ..+.+|+|+||||||||++|++++...+ +++.++|.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 46788888888888865431 2356899999999999999999998887 89999998765433
Q ss_pred HHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 377 LHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 377 i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
...+|+.+. +.+|||||+|.+.. .....|+..++... ..++.+|++||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~-----------~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR-----------NIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH-----------HHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH-----------HHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 455666654 45999999998843 23445666666532 4567889999864
No 160
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.16 E-value=6.1e-12 Score=151.11 Aligned_cols=205 Identities=16% Similarity=0.151 Sum_probs=122.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE----ecccccccccc
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV----NGPEVVSQNYG 371 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i----~~~~l~~~~~g 371 (957)
..|.|.+.+++.+.-.+.-.. ...+.+..+....+|||+||||||||++|+++|..++..++.. ++..+......
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~-~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGV-PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCC-CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCCC-cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 358899987766532211100 0001111233445899999999999999999999987665442 22333322211
Q ss_pred h-----hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-----------cCCCeEEE
Q 002169 372 E-----SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-----------RTDGVLVI 435 (957)
Q Consensus 372 e-----~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-----------~~~~v~vI 435 (957)
. .... ...+..| ..+|+||||+|.+.+ .....|+..|+.-. ...++.||
T Consensus 374 ~~~~g~~~~~-~G~l~~A---~~gil~IDEid~l~~-----------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 374 EKGTGEYYLE-AGALVLA---DGGIAVIDEIDKMRD-----------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp GGGTSSCSEE-ECHHHHH---SSSEECCTTTTCCCS-----------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred cccccccccc-CCeeEec---CCCcEEeehhhhCCH-----------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 1 0000 0122223 245999999998843 23456777776421 12467899
Q ss_pred EecCCCC-------------CchhhhhCCCCccee-eeecCCCHHHHHHHHHHHHcCCCC--------------------
Q 002169 436 AATNRPD-------------SIEPALRRPGRLDRE-IEIAVPSPAQRLEILHALLSGMEH-------------------- 481 (957)
Q Consensus 436 ~ttN~~~-------------~ld~al~r~gRfd~~-I~i~~P~~~~r~~Il~~~l~~~~~-------------------- 481 (957)
+|||+.. .+++++++ |||.. +..+.|+.+ ...|.+..+.....
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 9999986 89999999 99854 456667777 77888776654221
Q ss_pred -----CCChHHHHHHHHH--------------cCCCcHHHHHHHHHHHHHHHHHHhc
Q 002169 482 -----SLLDSEVEYLSMA--------------THGFVGADLAALCNEAALVCLRRYS 519 (957)
Q Consensus 482 -----~l~~~~l~~La~~--------------t~g~~gaDi~~l~~~A~~~a~rr~~ 519 (957)
.++++..+.+... ..+.+.+.+..+++.|...|..+..
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~ 572 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALK 572 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSS
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCc
Confidence 2333334444443 2456777777787777666644433
No 161
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.11 E-value=8.7e-11 Score=104.58 Aligned_cols=78 Identities=31% Similarity=0.541 Sum_probs=72.6
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 812 YVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 812 ~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
.-.+|+.++|.+||+.+++++++..+++++.||+.|+||||+||.++|++|++.|+++. ...|+.+||..|+.++.|.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~--~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHccC
Confidence 35789999999999999999999889999999999999999999999999999999986 5689999999999998764
No 162
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.10 E-value=1.9e-10 Score=100.50 Aligned_cols=75 Identities=33% Similarity=0.610 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCC
Q 002169 814 GPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQP 890 (957)
Q Consensus 814 ~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p 890 (957)
|+|+.++|.+||+.+++++++..++++..||..|+||||+||.++|++|++.|+++. ...|+.+||..|+.++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~--~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--RVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Confidence 689999999999999999998889999999999999999999999999999999986 668999999999988754
No 163
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=7.8e-10 Score=121.98 Aligned_cols=142 Identities=13% Similarity=0.235 Sum_probs=104.1
Q ss_pred CcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc------CCcEEEEecccccccccchh
Q 002169 300 GLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS------GVNLFTVNGPEVVSQNYGES 373 (957)
Q Consensus 300 Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l------~~~~i~i~~~~l~~~~~ge~ 373 (957)
|.+++++.|+..+... . ...+|||||||+|||++|+++|+.+ ...++.+++.+ .. -.
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~--~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---EN--IG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SC--BC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CC--CC
Confidence 4455666666664322 1 3479999999999999999999864 34677777542 11 12
Q ss_pred HHHHHHHHHHHhcc----CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhh
Q 002169 374 EQALHEVFDSASQS----APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALR 449 (957)
Q Consensus 374 e~~i~~vf~~a~~~----~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~ 449 (957)
-..++.+++.+... ...|+||||+|.+.. ...+.|+..|+. ...++++|++|+.++.+.|+++
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~-----------~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~ 130 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-----------QAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIK 130 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH-----------HHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH-----------HHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHH
Confidence 33567777776532 247999999999842 235678888887 3567889999999999999999
Q ss_pred CCCCcceeeeecCCCHHHHHHHHHHHH
Q 002169 450 RPGRLDREIEIAVPSPAQRLEILHALL 476 (957)
Q Consensus 450 r~gRfd~~I~i~~P~~~~r~~Il~~~l 476 (957)
+ | .++|..|+.++..++++..+
T Consensus 131 S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 131 S--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp T--T---SEEEECCCCHHHHHHHHHHH
T ss_pred c--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9 7 68999999999999998776
No 164
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.09 E-value=2.5e-10 Score=102.15 Aligned_cols=73 Identities=25% Similarity=0.408 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 817 NETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 817 ~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
+.++|.+||+.+++++++..++++..||..|+||||+||.++|++|++.|+++. ...|+.+||..|++++.+.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~--~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR--RKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS--CSSBCHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc--cccCCHHHHHHHHHHHhcC
Confidence 567899999999999999999999999999999999999999999999999986 5679999999999999876
No 165
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.08 E-value=2.1e-10 Score=130.79 Aligned_cols=204 Identities=21% Similarity=0.257 Sum_probs=128.6
Q ss_pred cccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC---CcEEEEeCCCcccc---
Q 002169 646 EDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPELFSK--- 719 (957)
Q Consensus 646 ~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~---~~~i~v~~~~l~~~--- 719 (957)
+.++|.....+.+.+.+... ......++++|++|||||++|++|..... .+|+.+++..+...
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 45667766666666655421 23355689999999999999999998764 69999999875321
Q ss_pred ----------cccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------
Q 002169 720 ----------WVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH--------- 780 (957)
Q Consensus 720 ----------~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~--------- 780 (957)
+.|... .....|+.|.++ +||||||+.+ ...++..|+..|+...
T Consensus 206 ~elfg~~~g~~tga~~-~~~g~~~~a~~g---tlfldei~~l-------------~~~~q~~Ll~~l~~~~~~~~g~~~~ 268 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVS-SKEGFFELADGG---TLFLDEIGEL-------------SLEAQAKLLRVIESGKFYRLGGRKE 268 (387)
T ss_dssp HHHHCBCTTSSTTCCS-CBCCHHHHTTTS---EEEEESGGGC-------------CHHHHHHHHHHHHHSEECCBTCCSB
T ss_pred HHhcCCCCCCCCCccc-ccCCceeeCCCc---EEEEcChhhC-------------CHHHHHHHHHHHhcCcEEeCCCCce
Confidence 111111 124567777776 9999999966 4566777888877421
Q ss_pred cCCcEEEEEecCCCCCCChhhhCCCCcceec-------ccCCCCHHHH----HHHHH----HHHhcCCCC-CcccH---H
Q 002169 781 QRVNVTVIAATNRPDKIDPALLRPGRFDRLL-------YVGPPNETDR----EEIFR----IHLRKIPCS-SDVNI---R 841 (957)
Q Consensus 781 ~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i-------~~~~P~~~er----~~Il~----~~l~~~~~~-~~~~l---~ 841 (957)
...++.||+|||..-. .+.+.|+|...+ .+..|...+| ..+++ .+.++++.. ..... .
T Consensus 269 ~~~~~rii~at~~~l~---~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 345 (387)
T 1ny5_A 269 IEVNVRILAATNRNIK---ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQE 345 (387)
T ss_dssp EECCCEEEEEESSCHH---HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHH
T ss_pred eeccEEEEEeCCCCHH---HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 1237889999996533 445556775433 2445666554 23333 333344433 12333 3
Q ss_pred HHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 002169 842 ELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAI 885 (957)
Q Consensus 842 ~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al 885 (957)
.|.....--+.++++++++.|+..+ +...|+.+|+...+
T Consensus 346 ~l~~~~wpGNvreL~~~i~~~~~~~-----~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 346 LLLSYPWYGNVRELKNVIERAVLFS-----EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHC-----CSSEECHHHHHHHC
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHhC-----CCCcCcHHHCcHhh
Confidence 3333332225789999999988765 24568888886543
No 166
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.08 E-value=1.7e-09 Score=123.41 Aligned_cols=206 Identities=15% Similarity=0.146 Sum_probs=132.0
Q ss_pred cccCCcHHHHHHHHHHH-HhhhhhhhhhhcCC-CCCCeEEE--EcCCCChHHHHHHHHHHHc---------CCcEEEEec
Q 002169 296 SKLGGLSKEYAILKDII-ISSSVKSTLSSLGL-RPTKGVLL--HGPPGTGKTSLARLCAHDS---------GVNLFTVNG 362 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i-~~~~~~~~~~~l~i-~~~~~vLL--~GppGtGKTtLaralA~~l---------~~~~i~i~~ 362 (957)
+.+.|.+.+++.|.+.+ ..... +. ..+..++| +||+|+|||+|++.+++.+ +..++.++|
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~-------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS-------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 94 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT-------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred CCCCChHHHHHHHHHHHhHHHhc-------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC
Confidence 56899999999998886 43311 11 24568999 9999999999999999876 456778887
Q ss_pred ccccccc----------------cch-hHHHHHHHHHHHh-ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhh
Q 002169 363 PEVVSQN----------------YGE-SEQALHEVFDSAS-QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMD 424 (957)
Q Consensus 363 ~~l~~~~----------------~ge-~e~~i~~vf~~a~-~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld 424 (957)
....... .+. .......+.+... ...|.||+|||+|.+...... ....+..++..++
T Consensus 95 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-----~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 95 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-----AAEDLYTLLRVHE 169 (412)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-----CHHHHHHHHTHHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-----chHHHHHHHHHHH
Confidence 4321100 011 1111222222222 245789999999998643111 1234444555555
Q ss_pred cccc-C--CCeEEEEecCCCC---Cch---hhhhCCCCcceeeeecCCCHHHHHHHHHHHHcC--CCCCCChHHHHHHHH
Q 002169 425 GVCR-T--DGVLVIAATNRPD---SIE---PALRRPGRLDREIEIAVPSPAQRLEILHALLSG--MEHSLLDSEVEYLSM 493 (957)
Q Consensus 425 ~l~~-~--~~v~vI~ttN~~~---~ld---~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l~~--~~~~l~~~~l~~La~ 493 (957)
.... . .++.+|++++.++ .++ +.+.+ ||...+.++.++.++..+++...+.. ....+++..++.++.
T Consensus 170 ~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 170 EIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred hcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 4321 2 5788888887655 344 55666 55555999999999999999876542 223457788889998
Q ss_pred HcC------CCcHHHHHHHHHHHHHHHHH
Q 002169 494 ATH------GFVGADLAALCNEAALVCLR 516 (957)
Q Consensus 494 ~t~------g~~gaDi~~l~~~A~~~a~r 516 (957)
.+. |. +..+..+++.|...+..
T Consensus 248 ~~~~~~~~~G~-p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 248 VYGEDKGGDGS-ARRAIVALKMACEMAEA 275 (412)
T ss_dssp HHCGGGTSCCC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCc-HHHHHHHHHHHHHHHHH
Confidence 888 64 55677777777655543
No 167
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.6e-10 Score=138.50 Aligned_cols=57 Identities=11% Similarity=-0.074 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.|..+++|....|.||++||+.+.++.. ....++..|..+....+..||++||+.+.
T Consensus 474 QRv~iAraL~~~p~lLlLDEPT~gLD~~------------~~~~i~~ll~~l~~~~g~tviivtHdl~~ 530 (608)
T 3j16_B 474 QRVAIVLALGIPADIYLIDEPSAYLDSE------------QRIICSKVIRRFILHNKKTAFIVEHDFIM 530 (608)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTTCCHH------------HHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCHH------------HHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 3778899999999999999999765432 22233333333322336789999998765
No 168
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.02 E-value=3.9e-08 Score=134.29 Aligned_cols=128 Identities=18% Similarity=0.255 Sum_probs=89.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDG 407 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~ 407 (957)
...+..+.||+|||||.+++.+|+.+|.+++.++|++-+.. ..+..+|..+... .+...+||++.+-..
T Consensus 603 ~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~~---- 671 (3245)
T 3vkg_A 603 SRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEER---- 671 (3245)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCHH----
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCHH----
Confidence 34567899999999999999999999999999999875432 3456666665543 468999999887321
Q ss_pred CchHHHHHHHH-HHHHhh-------------c--cccCCCeEEEEecCC----CCCchhhhhCCCCcceeeeecCCCHHH
Q 002169 408 GEELSQRMVAT-LLNLMD-------------G--VCRTDGVLVIAATNR----PDSIEPALRRPGRLDREIEIAVPSPAQ 467 (957)
Q Consensus 408 ~~~~~~~i~~~-Ll~~ld-------------~--l~~~~~v~vI~ttN~----~~~ld~al~r~gRfd~~I~i~~P~~~~ 467 (957)
.-.++.+ +..+.. + +.-..++.|++|+|+ -.+++++++. || +.+.+..|+.+.
T Consensus 672 ----vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~ 744 (3245)
T 3vkg_A 672 ----ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREM 744 (3245)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHH
T ss_pred ----HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHH
Confidence 1122222 111111 1 122345788999985 3589999998 77 559999999988
Q ss_pred HHHHHH
Q 002169 468 RLEILH 473 (957)
Q Consensus 468 r~~Il~ 473 (957)
..+|+-
T Consensus 745 i~ei~L 750 (3245)
T 3vkg_A 745 IAQVML 750 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888753
No 169
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.99 E-value=5.3e-10 Score=134.84 Aligned_cols=117 Identities=23% Similarity=0.344 Sum_probs=76.7
Q ss_pred CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc-------------------cCCCeEEEEecCCC--CCchh
Q 002169 388 APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC-------------------RTDGVLVIAATNRP--DSIEP 446 (957)
Q Consensus 388 ~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~-------------------~~~~v~vI~ttN~~--~~ld~ 446 (957)
.+.+|||||++.+. ..+...|+..|+.-. ...++.||++||+. +.+++
T Consensus 201 ~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~ 269 (604)
T 3k1j_A 201 HKGVLFIDEIATLS-----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP 269 (604)
T ss_dssp TTSEEEETTGGGSC-----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred CCCEEEEechhhCC-----------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence 35699999999873 234556777776321 12367899999986 67899
Q ss_pred hhhCCCCcc---eeeeecC--C-CHHHHHHHHHHHHcC-----CCCCCChHHHHHHHHHc---CCC------cHHHHHHH
Q 002169 447 ALRRPGRLD---REIEIAV--P-SPAQRLEILHALLSG-----MEHSLLDSEVEYLSMAT---HGF------VGADLAAL 506 (957)
Q Consensus 447 al~r~gRfd---~~I~i~~--P-~~~~r~~Il~~~l~~-----~~~~l~~~~l~~La~~t---~g~------~gaDi~~l 506 (957)
+|++ ||. ..+.++. + ..+....+++..... ....+++..++.+.... .|- +.+++.++
T Consensus 270 ~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~l 347 (604)
T 3k1j_A 270 ALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGI 347 (604)
T ss_dssp HHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHH
T ss_pred HHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHH
Confidence 9999 885 3344432 1 344455555443322 22456788888887754 442 68999999
Q ss_pred HHHHHHHHHHH
Q 002169 507 CNEAALVCLRR 517 (957)
Q Consensus 507 ~~~A~~~a~rr 517 (957)
++.|...|..+
T Consensus 348 lr~A~~~A~~~ 358 (604)
T 3k1j_A 348 VRAAGDIAVKK 358 (604)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99987766544
No 170
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.98 E-value=3.6e-10 Score=114.41 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=75.5
Q ss_pred cCCccccccCC----hHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh----CCcEEEE
Q 002169 640 VPKVKWEDVGG----QREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA----GLNFLAV 711 (957)
Q Consensus 640 ~p~v~~~di~G----~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v 711 (957)
..+.+|+++++ ++++.+.+++++. .+....+.+++|+||||||||++++++++.+ +..++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVH----------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHH----------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHH----------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 34567888775 3344444444332 2344456789999999999999999999876 5566666
Q ss_pred eCCCcccccccchHH-HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEe
Q 002169 712 KGPELFSKWVGESEK-AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAA 790 (957)
Q Consensus 712 ~~~~l~~~~vg~~~~-~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~a 790 (957)
+..++...+...... ....+++.. ..|.+|+|||++... ........+...++.... .+..+|++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~-----------~~~~~~~~l~~ll~~~~~-~~~~ii~t 139 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER-----------LSDWQRELISYIITYRYN-NLKSTIIT 139 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC-----------CCHHHHHHHHHHHHHHHH-TTCEEEEE
T ss_pred EHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc-----------CCHHHHHHHHHHHHHHHH-cCCCEEEE
Confidence 655554332111000 001122222 257799999998431 112222233333443322 25678888
Q ss_pred cCCCCC
Q 002169 791 TNRPDK 796 (957)
Q Consensus 791 TN~~~~ 796 (957)
||.+..
T Consensus 140 sn~~~~ 145 (180)
T 3ec2_A 140 TNYSLQ 145 (180)
T ss_dssp CCCCSC
T ss_pred cCCChh
Confidence 887654
No 171
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.97 E-value=6.9e-10 Score=98.11 Aligned_cols=74 Identities=23% Similarity=0.417 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCCc
Q 002169 817 NETDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPSE 892 (957)
Q Consensus 817 ~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~~ 892 (957)
+.++|.+||+.+++++++..++++..+|..|+||||+||.++|++|++.|+++. ...|+.+||..|+.+++|+.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~--~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN--RYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC--CSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCCcCHHHHHHHHHHHccCc
Confidence 678999999999999998889999999999999999999999999999999875 56899999999999999983
No 172
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.94 E-value=1.1e-09 Score=129.69 Aligned_cols=57 Identities=5% Similarity=0.049 Sum_probs=39.6
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.|..+++|....|.||++||+.+.++.. ...+++..|..+....+..||++||+.+.
T Consensus 392 QRv~iAraL~~~p~lLlLDEPT~gLD~~------------~~~~i~~~l~~l~~~~g~tvi~vsHdl~~ 448 (538)
T 3ozx_A 392 QKLYIAATLAKEADLYVLDQPSSYLDVE------------ERYIVAKAIKRVTRERKAVTFIIDHDLSI 448 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHH------------HHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHH------------HHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 4888999999999999999999765432 22234444444333446788999997754
No 173
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.92 E-value=7.8e-10 Score=111.91 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=65.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEecccccccccchhHH-HHHHHHHHHhccCCeEEEEcCc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQNYGESEQ-ALHEVFDSASQSAPAVVFIDEL 397 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~~~l~~~~~ge~e~-~i~~vf~~a~~~~p~IL~IDEi 397 (957)
++.+..+++++|+||||||||||++++++.+ |..++.+++.++.......... ....+++. ...|.+|+|||+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~ 109 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDL 109 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCC
Confidence 4566678999999999999999999999876 5566667766654432211100 00012222 125789999998
Q ss_pred cccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 398 DAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 398 D~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
+... .+... ...|..+++.... .+..+|++||.+.
T Consensus 110 ~~~~------~~~~~---~~~l~~ll~~~~~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 110 GSER------LSDWQ---RELISYIITYRYN-NLKSTIITTNYSL 144 (180)
T ss_dssp SSSC------CCHHH---HHHHHHHHHHHHH-TTCEEEEECCCCS
T ss_pred CCCc------CCHHH---HHHHHHHHHHHHH-cCCCEEEEcCCCh
Confidence 7541 11222 2344555554432 3456777777653
No 174
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.85 E-value=4e-09 Score=119.40 Aligned_cols=190 Identities=17% Similarity=0.232 Sum_probs=115.1
Q ss_pred ccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCC--cEEEEeCCCcccc-----
Q 002169 647 DVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPELFSK----- 719 (957)
Q Consensus 647 di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~~~l~~~----- 719 (957)
.++|.......+.+.+... ......++++|++||||+++|+++....+. .|+.+++..+-..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~-----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKI-----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhh-----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 4566666666665554321 123456999999999999999999988754 3999999875322
Q ss_pred ----cccchH---HHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc---------cCC
Q 002169 720 ----WVGESE---KAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH---------QRV 783 (957)
Q Consensus 720 ----~vg~~~---~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~ 783 (957)
..|.+. +.....|+.|.++ +||||||+.+ ...++..|+..|+... ...
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~g---tlfldei~~l-------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 262 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQG---TLFLDEVGEL-------------DQRVQAKLLRVLETGSFTRLGGNQKIEV 262 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTS---EEEEETGGGS-------------CHHHHHHHHHHHHHSEECCBTCCCBEEC
T ss_pred hcCccccccCCcccccCChHhhcCCC---eEEecChhhC-------------CHHHHHHHHHHHHhCCcccCCCCcceee
Confidence 111111 1123467777666 9999999976 4566777888887431 123
Q ss_pred cEEEEEecCCCCCCChhhhCCCCcce-------ecccCCCCHHH----HHHHHHHHH----hcCCCC-Cccc---HHHHH
Q 002169 784 NVTVIAATNRPDKIDPALLRPGRFDR-------LLYVGPPNETD----REEIFRIHL----RKIPCS-SDVN---IRELA 844 (957)
Q Consensus 784 ~v~VI~aTN~~~~id~aLlr~gRfd~-------~i~~~~P~~~e----r~~Il~~~l----~~~~~~-~~~~---l~~la 844 (957)
++.+|+|||..-. .+...|+|.. .+.+..|...+ ...+++.++ .+.+.. ..+. +..|.
T Consensus 263 ~~rii~at~~~l~---~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 339 (368)
T 3dzd_A 263 DIRVISATNKNLE---EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLM 339 (368)
T ss_dssp CCEEEEEESSCHH---HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH
T ss_pred eeEEEEecCCCHH---HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHH
Confidence 6889999995422 3444566654 22333444444 344444444 333322 1233 33444
Q ss_pred HHccCCcHHHHHHHHHHHHHHH
Q 002169 845 CLSEGCTGADISLICREAAISA 866 (957)
Q Consensus 845 ~~t~g~sg~dl~~l~~eA~~~a 866 (957)
....--+.++++++++.|+..+
T Consensus 340 ~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 340 KQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp TCCCTTHHHHHHHHHHHHHHTC
T ss_pred hCCCCcHHHHHHHHHHHHHHhC
Confidence 4432225799999999887654
No 175
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.82 E-value=3.2e-08 Score=118.82 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++.. ....++..|..+....+..||++||+.+.
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~------------~~~~l~~~l~~l~~~~g~tvi~vsHd~~~ 534 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVE------------QRLAVSRAIRHLMEKNEKTALVVEHDVLM 534 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHH------------HHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHH------------HHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 677888889999999999999765432 22233344443322335688999997655
No 176
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.82 E-value=8.3e-08 Score=113.83 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++. ....+++..|..+....+..||++||+.+.
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~------------~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~ 464 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDV------------EQRLAVSRAIRHLMEKNEKTALVVEHDVLM 464 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCH------------HHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCH------------HHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 77888999999999999999976543 222233334433322235678999997765
No 177
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.80 E-value=6.4e-09 Score=102.39 Aligned_cols=101 Identities=14% Similarity=0.278 Sum_probs=69.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPAR 404 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~ 404 (957)
+++.++|+||+|+|||+|++++++.+ |...+.+++.++... +....|.+|+|||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence 67899999999999999999999987 667888888777553 11235789999999875321
Q ss_pred cCCCchHHHHHHHHHHHHhhccccCCCeEEEEecC-CCCCch--hhhhCCCCcce
Q 002169 405 KDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATN-RPDSIE--PALRRPGRLDR 456 (957)
Q Consensus 405 ~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN-~~~~ld--~al~r~gRfd~ 456 (957)
. ...|+.+++.+...+..++|+++| .++.+. +.+++ |+..
T Consensus 99 -------~---~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~ 141 (149)
T 2kjq_A 99 -------E---QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMAY 141 (149)
T ss_dssp -------H---HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGGG
T ss_pred -------H---HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHhc
Confidence 1 344556666554444443555666 454333 67776 6644
No 178
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.80 E-value=1.3e-08 Score=120.69 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=68.6
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc----------------------cc----cc--ch
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS----------------------KW----VG--ES 724 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~----------------------~~----vg--~~ 724 (957)
++.+..-++|.||||+|||||++.++... |...+.+...+-.. .+ .. ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45556669999999999999999998764 34445554332100 00 00 23
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 725 EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 725 ~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
....+.+++.+....|.+|+|| ..+.++.... + ......+..++..+. ..++.||++||..
T Consensus 357 g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~--~--~~~~~~i~~ll~~l~----~~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAID-SLSALARGVS--N--NAFRQFVIGVTGYAK----QEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSC--H--HHHHHHHHHHHHHHH----HTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCC--h--HHHHHHHHHHHHHHH----hCCCEEEEEECcc
Confidence 4566788889989999999999 7766543210 0 112333334444443 2367888888876
No 179
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.75 E-value=2.8e-08 Score=97.81 Aligned_cols=104 Identities=15% Similarity=0.198 Sum_probs=67.9
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhc
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIR 755 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r 755 (957)
+...++|+||+|+|||++++++++.. +...+.+++.++... +....|.+|+|||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence 45679999999999999999999987 667888888877543 11235789999999875321
Q ss_pred CCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCC-CCCCC--hhhhCCCCcceecc
Q 002169 756 GKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNR-PDKID--PALLRPGRFDRLLY 812 (957)
Q Consensus 756 ~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~-~~~id--~aLlr~gRfd~~i~ 812 (957)
. ...++..++.....+..++|++||. |..+. +.+.+ ||.....
T Consensus 99 ---------~---~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~ 144 (149)
T 2kjq_A 99 ---------E---QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLV 144 (149)
T ss_dssp ---------H---HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEE
T ss_pred ---------H---HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH--HHhcCee
Confidence 1 2334444444333323335567774 44332 77777 7754433
No 180
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.72 E-value=3.7e-09 Score=93.18 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 819 TDREEIFRIHLRKIPCSSDVNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 819 ~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
++|.+||+.+++++++..++++..+|..|+||||+||.++|++|++.|+++. ...|+.+||..|+.++.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~--~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--RYVILQSDLEEAYATQV 69 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--cCCcCHHHHHHHHHHHH
Confidence 4689999999999998889999999999999999999999999999999986 56799999999999985
No 181
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.72 E-value=4.1e-08 Score=112.29 Aligned_cols=212 Identities=16% Similarity=0.128 Sum_probs=124.8
Q ss_pred cCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHH-HHHhCCcEEE-EeCCC---ccccccc
Q 002169 648 VGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAV-ASEAGLNFLA-VKGPE---LFSKWVG 722 (957)
Q Consensus 648 i~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkai-A~~~~~~~i~-v~~~~---l~~~~vg 722 (957)
|.|++.+|..+.-++...... .+..-++||.|+||| ||++||++ ++.+....+. ..++. +.....+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 889999988876665421100 122337999999999 99999999 7765432221 11110 1110000
Q ss_pred ch-HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccc-------cCCcEEEEEecCCC
Q 002169 723 ES-EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLH-------QRVNVTVIAATNRP 794 (957)
Q Consensus 723 ~~-~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~-------~~~~v~VI~aTN~~ 794 (957)
.+ -..-...+..|.++ |+|+||++.+ ....+..|+..|+... -..++.||+|+|..
T Consensus 286 ~tG~~~~~G~l~LAdgG---vl~lDEIn~~-------------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 286 DRGWALRAGAAVLADGG---ILAVDHLEGA-------------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPG 349 (506)
T ss_dssp SSSEEEEECHHHHTTTS---EEEEECCTTC-------------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred CCCcccCCCeeEEcCCC---eeehHhhhhC-------------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence 00 00002234556566 9999999955 5667778888887431 13468899999986
Q ss_pred C-----------CCChhhhCCCCcceecc-cCCCCHHH-------------HHHHHHHHHh-c--CCCCCcccHHHHH--
Q 002169 795 D-----------KIDPALLRPGRFDRLLY-VGPPNETD-------------REEIFRIHLR-K--IPCSSDVNIRELA-- 844 (957)
Q Consensus 795 ~-----------~id~aLlr~gRfd~~i~-~~~P~~~e-------------r~~Il~~~l~-~--~~~~~~~~l~~la-- 844 (957)
+ .+.++++. |||-++. .+.|+.+. ..+.+. +.+ . .+...+...+.+.
T Consensus 350 ~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHH
T ss_pred cccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHH
Confidence 5 78899999 9986543 35554332 112211 222 1 1211111111111
Q ss_pred ----H-----------HccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhC
Q 002169 845 ----C-----------LSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQ 889 (957)
Q Consensus 845 ----~-----------~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~ 889 (957)
+ ..-|.|.|.+..+++-|...|..+. ...|+.+|+..|+.-+.
T Consensus 427 y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g--R~~V~~eDV~~Ai~L~~ 484 (506)
T 3f8t_A 427 YETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL--SDDVEPEDVDIAAELVD 484 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT--CSEECHHHHHHHHHHHH
T ss_pred HHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC--cCCCCHHHHHHHHHHHH
Confidence 0 2347789999999998887777765 67899999999886543
No 182
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.71 E-value=7.6e-08 Score=109.68 Aligned_cols=191 Identities=23% Similarity=0.264 Sum_probs=117.6
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC---CcEEEEeccccccccc--
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG---VNLFTVNGPEVVSQNY-- 370 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~---~~~i~i~~~~l~~~~~-- 370 (957)
..+.|.....+.+.+.+... .....+|+|+|++||||+++|++++...+ .+|+.++|..+.....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~ 206 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEA 206 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHh----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHH
Confidence 34566666555555554331 13456799999999999999999998764 6899999987543210
Q ss_pred -----------chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccc---------cCC
Q 002169 371 -----------GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVC---------RTD 430 (957)
Q Consensus 371 -----------ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~---------~~~ 430 (957)
|... .....|+.|.. .+|||||++.+. ..+...|+..|+.-. ...
T Consensus 207 elfg~~~g~~tga~~-~~~g~~~~a~~---gtlfldei~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 207 ELFGYEKGAFTGAVS-SKEGFFELADG---GTLFLDEIGELS-----------LEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHCBCTTSSTTCCS-CBCCHHHHTTT---SEEEEESGGGCC-----------HHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HhcCCCCCCCCCccc-ccCCceeeCCC---cEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 1100 01234555544 499999999883 345566777776421 123
Q ss_pred CeEEEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHHH----HHHHHHHc----CCC---CCCChHHHHHHH
Q 002169 431 GVLVIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQRL----EILHALLS----GME---HSLLDSEVEYLS 492 (957)
Q Consensus 431 ~v~vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r~----~Il~~~l~----~~~---~~l~~~~l~~La 492 (957)
++.+|++||.. +.. +.+.|+|.. .+.+..|...+|. .+++.++. +++ ..+++..++.|.
T Consensus 272 ~~rii~at~~~--l~~-~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~ 348 (387)
T 1ny5_A 272 NVRILAATNRN--IKE-LVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 348 (387)
T ss_dssp CCEEEEEESSC--HHH-HHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred cEEEEEeCCCC--HHH-HHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 57899999863 222 222345532 2456677766553 33333332 222 235777888887
Q ss_pred HHcCCCcHHHHHHHHHHHHHHH
Q 002169 493 MATHGFVGADLAALCNEAALVC 514 (957)
Q Consensus 493 ~~t~g~~gaDi~~l~~~A~~~a 514 (957)
.+.-..+.++|+++++.|+..+
T Consensus 349 ~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 349 SYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HSCCTTHHHHHHHHHHHHHHHC
T ss_pred hCCCCcHHHHHHHHHHHHHHhC
Confidence 7654556679999988876543
No 183
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.68 E-value=1.7e-08 Score=110.78 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=77.3
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCC--cEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhh
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAI 754 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~ 754 (957)
+.+...++|+||||||||+||.++|.+.+. .|+.+...+.++.+....+..++.+++.+.... +|+|||++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 444555899999999999999999987543 467764344444444445556666666666554 9999999998544
Q ss_pred cCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhh
Q 002169 755 RGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPAL 801 (957)
Q Consensus 755 r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aL 801 (957)
.... ...+...+.+.+++..|.+.....++++|++|| +...|+++
T Consensus 198 ~~~~-s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 198 AGGN-TTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccc-cccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 3221 111122455667777777665566888999988 44555553
No 184
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.68 E-value=7.4e-07 Score=98.75 Aligned_cols=188 Identities=15% Similarity=0.146 Sum_probs=116.4
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc------c--
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV------S-- 367 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~------~-- 367 (957)
+.+.|.+.+++.|.+.+.. +..++|+||+|+|||+|++.+++..+ .+.+++.... .
T Consensus 12 ~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITRE 75 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHH
T ss_pred HhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHH
Confidence 4578999999998887531 25899999999999999999999876 6666654321 0
Q ss_pred -------ccc-------------------------chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHH
Q 002169 368 -------QNY-------------------------GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRM 415 (957)
Q Consensus 368 -------~~~-------------------------ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i 415 (957)
... ......+..+.+.+....|.+|+|||++.+...... ....+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~----~~~~~ 151 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR----GGKEL 151 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT----TTHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc----chhhH
Confidence 000 001111222222222224899999999988541100 11223
Q ss_pred HHHHHHHhhccccCCCeEEEEecCCCCCchhh-----hhC--CCCcceeeeecCCCHHHHHHHHHHHHcCCCCCCChHHH
Q 002169 416 VATLLNLMDGVCRTDGVLVIAATNRPDSIEPA-----LRR--PGRLDREIEIAVPSPAQRLEILHALLSGMEHSLLDSEV 488 (957)
Q Consensus 416 ~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a-----l~r--~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~~~l~~~~l 488 (957)
...|..+++.. .++.+|+++.....+... ... .||+...+.+++.+.++..+++...+...+..+++..+
T Consensus 152 ~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~ 228 (350)
T 2qen_A 152 LALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEI 228 (350)
T ss_dssp HHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred HHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 33343444432 467777776543212211 011 23666679999999999999998877766666678888
Q ss_pred HHHHHHcCCCcHHHHHHHH
Q 002169 489 EYLSMATHGFVGADLAALC 507 (957)
Q Consensus 489 ~~La~~t~g~~gaDi~~l~ 507 (957)
..+...+.|+-. -+..++
T Consensus 229 ~~i~~~tgG~P~-~l~~~~ 246 (350)
T 2qen_A 229 EEAVELLDGIPG-WLVVFG 246 (350)
T ss_dssp HHHHHHHTTCHH-HHHHHH
T ss_pred HHHHHHhCCCHH-HHHHHH
Confidence 889998988753 344443
No 185
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.66 E-value=7.3e-08 Score=117.59 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCC---eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 727 AVRSLFAKARANAP---SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 727 ~ir~~f~~A~~~~p---~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.-|..+++|....| .||++||+.+.++. .....++..+..+... +.+||++||+++
T Consensus 549 ~qrv~iAraL~~~p~~p~llllDEPt~~LD~------------~~~~~i~~~l~~l~~~-g~tvi~vtHd~~ 607 (670)
T 3ux8_A 549 AQRVKLAAELHRRSNGRTLYILDEPTTGLHV------------DDIARLLDVLHRLVDN-GDTVLVIEHNLD 607 (670)
T ss_dssp HHHHHHHHHHHSCCCSCEEEEEESTTTTCCH------------HHHHHHHHHHHHHHHT-TCEEEEECCCHH
T ss_pred HHHHHHHHHHhhCCCCCcEEEEeCCCCCCCH------------HHHHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 34677888876655 69999999966532 2223344444444333 678999999775
No 186
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.65 E-value=1.2e-08 Score=112.05 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=73.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
|+.++..++|+||||||||+||..+|...+.. |+.....+.++.+..+.+..+..+++.+.... +|+||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 56677788999999999999999999765444 55552233334333455666666666665544 999999999865
Q ss_pred CCcCCCc-hHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhh
Q 002169 403 ARKDGGE-ELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPAL 448 (957)
Q Consensus 403 ~~~~~~~-~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al 448 (957)
.....+. ....+...+++..|.++....++++|+++|+ ...++++
T Consensus 197 ~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp-~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP-TSNDDKI 242 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC-SSCSSSH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC-cccchhH
Confidence 4432110 0012333445555555444557788888884 4444443
No 187
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.62 E-value=1.6e-07 Score=116.96 Aligned_cols=29 Identities=34% Similarity=0.562 Sum_probs=26.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHH
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~ 351 (957)
++.+.+++.+.|.||+|+|||||+++|++
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35677899999999999999999999994
No 188
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.61 E-value=3.1e-07 Score=102.02 Aligned_cols=186 Identities=15% Similarity=0.152 Sum_probs=113.0
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc-----
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL----- 716 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l----- 716 (957)
....+.++|.++..+.|.+ +.. ..++++||+|+|||++++.++++.+..++.+++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 3445678899888887776 531 479999999999999999999998777777776432
Q ss_pred cc--cc-------c------------------c--------c------hHHHHHHHHHHHHhC--CCeEEEEeCCchhhh
Q 002169 717 FS--KW-------V------------------G--------E------SEKAVRSLFAKARAN--APSIIFFDEIDGLAA 753 (957)
Q Consensus 717 ~~--~~-------v------------------g--------~------~~~~ir~~f~~A~~~--~p~ILfiDEid~l~~ 753 (957)
.+ .. + + . ....+..+++..... .|.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 00 00 0 0 0 011234444444332 388999999998753
Q ss_pred hcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC---------hhhhCCCCcceecccCCCCHHHHHHH
Q 002169 754 IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID---------PALLRPGRFDRLLYVGPPNETDREEI 824 (957)
Q Consensus 754 ~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id---------~aLlr~gRfd~~i~~~~P~~~er~~I 824 (957)
.. +.. ....+..+ .+. ..++.+|+++.....+. ..+ .||+...+.+++.+.++..++
T Consensus 152 ~~-----~~~-~~~~l~~~---~~~---~~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 152 LR-----GVN-LLPALAYA---YDN---LKRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp CT-----TCC-CHHHHHHH---HHH---CTTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHH
T ss_pred cC-----chh-HHHHHHHH---HHc---CCCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHH
Confidence 10 011 12222222 221 12566777765432111 112 246667889999999999999
Q ss_pred HHHHHhcCCCCCcccHHHHHHHccCCcHHHHHHHHH
Q 002169 825 FRIHLRKIPCSSDVNIRELACLSEGCTGADISLICR 860 (957)
Q Consensus 825 l~~~l~~~~~~~~~~l~~la~~t~g~sg~dl~~l~~ 860 (957)
++..+...+...+. ...+...+.|+. .-+..++.
T Consensus 218 l~~~~~~~~~~~~~-~~~i~~~t~G~P-~~l~~~~~ 251 (357)
T 2fna_A 218 LRRGFQEADIDFKD-YEVVYEKIGGIP-GWLTYFGF 251 (357)
T ss_dssp HHHHHHHHTCCCCC-HHHHHHHHCSCH-HHHHHHHH
T ss_pred HHHHHHHcCCCCCc-HHHHHHHhCCCH-HHHHHHHH
Confidence 98877644433332 378888999854 34544444
No 189
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.60 E-value=3.2e-08 Score=111.95 Aligned_cols=143 Identities=21% Similarity=0.245 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHhchhh--------cHHHHHhc--CCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccccc
Q 002169 651 QREVKTQLMEAVEWPQK--------HQEAFKRI--GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKW 720 (957)
Q Consensus 651 ~~~vk~~l~e~i~~~~~--------~~~~~~~l--~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~ 720 (957)
..++++.+ +.++|+.. ...+++++ +++++..++|+||||+||||++++|++..+..++.+..++- .
T Consensus 131 ~~~i~~~l-~~v~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~- 206 (377)
T 1svm_A 131 SADIEEWM-AGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R- 206 (377)
T ss_dssp CCCHHHHH-HHHHHHTTTSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T-
T ss_pred hHHHHHHH-hcchhhhhhhhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h-
Confidence 34455555 66776652 33445544 67777789999999999999999999998777655443321 0
Q ss_pred ccchHHHHHHHHHHHHhCCCeEEEEeCCchhhh-hcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 721 VGESEKAVRSLFAKARANAPSIIFFDEIDGLAA-IRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 721 vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~-~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
....+ .......++++||++.+.. .+...... . ......+...+++ .+.|+++||+++.+ +
T Consensus 207 ---~~~~l------g~~~q~~~~l~dd~~~~~~~~r~l~~~~-~--~~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~ 268 (377)
T 1svm_A 207 ---LNFEL------GVAIDQFLVVFEDVKGTGGESRDLPSGQ-G--INNLDNLRDYLDG-----SVKVNLEKKHLNKR-T 268 (377)
T ss_dssp ---HHHHH------GGGTTCSCEEETTCCCSTTTTTTCCCCS-H--HHHHHTTHHHHHC-----SSCEEECCSSSCCE-E
T ss_pred ---HHHHH------HHhcchhHHHHHHHHHHHHHHhhccccC-c--chHHHHHHHHhcC-----CCeEeeccCchhhH-H
Confidence 01111 1223345789999998764 22111110 0 0012334445554 34578899999999 7
Q ss_pred hhhCCCCcceecccCC
Q 002169 800 ALLRPGRFDRLLYVGP 815 (957)
Q Consensus 800 aLlr~gRfd~~i~~~~ 815 (957)
++++|||++..++...
T Consensus 269 alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 269 QIFPPGIVTMNEYSVP 284 (377)
T ss_dssp ECCCCEEEEECSCCCC
T ss_pred HhhcCcccChhHHhhc
Confidence 9999999998887754
No 190
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.58 E-value=4.9e-08 Score=86.77 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=52.9
Q ss_pred ecCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Q 002169 460 IAVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRRY 518 (957)
Q Consensus 460 i~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr~ 518 (957)
-.+|+.++|.+||+.+++++.+. .+.+++.||..|.||+|+||.++|++|++.|+++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~ 65 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc
Confidence 46899999999999999998775 67789999999999999999999999999998763
No 191
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.58 E-value=5.8e-08 Score=99.76 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=46.7
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccccccch-HHHHHHHHHHHHhCCCeEEEEeCCchh
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKWVGES-EKAVRSLFAKARANAPSIIFFDEIDGL 751 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~vg~~-~~~ir~~f~~A~~~~p~ILfiDEid~l 751 (957)
+.+++|+||||||||++|++++..+ +.+++.++++++...+.... ...+..++..... +.+|+|||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 3789999999999999999999887 56777777766544322110 0011223333332 359999999754
No 192
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.57 E-value=3.8e-07 Score=103.11 Aligned_cols=189 Identities=24% Similarity=0.338 Sum_probs=115.1
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEeccccccccc----
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVSQNY---- 370 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~~~~---- 370 (957)
.+.|.......+.+.+...- .....|+++|++||||+++|+++....+.. |+.++|..+.....
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~l 199 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESEL 199 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHH
T ss_pred cccccchHHHHHHhhhhhhh----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHh
Confidence 45666666666655543221 234569999999999999999999877543 99999987643211
Q ss_pred -----chh---HHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc--cc-------CCCeE
Q 002169 371 -----GES---EQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV--CR-------TDGVL 433 (957)
Q Consensus 371 -----ge~---e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l--~~-------~~~v~ 433 (957)
|.. ...-...|+.|.. .+||||||+.+. ..+...|+..++.- .. .-++.
T Consensus 200 fg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~r 265 (368)
T 3dzd_A 200 FGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELD-----------QRVQAKLLRVLETGSFTRLGGNQKIEVDIR 265 (368)
T ss_dssp HEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSC-----------HHHHHHHHHHHHHSEECCBTCCCBEECCCE
T ss_pred cCccccccCCcccccCChHhhcCC---CeEEecChhhCC-----------HHHHHHHHHHHHhCCcccCCCCcceeeeeE
Confidence 000 0001224555544 389999999883 34566778777642 11 12577
Q ss_pred EEEecCCCCCchhhhhCCCCcce-------eeeecCCCHHHH----HHHHHHHHcC----C---CCCCChHHHHHHHHHc
Q 002169 434 VIAATNRPDSIEPALRRPGRLDR-------EIEIAVPSPAQR----LEILHALLSG----M---EHSLLDSEVEYLSMAT 495 (957)
Q Consensus 434 vI~ttN~~~~ld~al~r~gRfd~-------~I~i~~P~~~~r----~~Il~~~l~~----~---~~~l~~~~l~~La~~t 495 (957)
+|++||.. +...+ ..|+|.. .+.+..|...+| ..+++.++.+ . ...+++..++.|..+.
T Consensus 266 ii~at~~~--l~~~v-~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 342 (368)
T 3dzd_A 266 VISATNKN--LEEEI-KKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE 342 (368)
T ss_dssp EEEEESSC--HHHHH-HTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC
T ss_pred EEEecCCC--HHHHH-HcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 99999852 33322 2345533 345556655554 3344443322 2 2346788888887766
Q ss_pred CCCcHHHHHHHHHHHHH
Q 002169 496 HGFVGADLAALCNEAAL 512 (957)
Q Consensus 496 ~g~~gaDi~~l~~~A~~ 512 (957)
-.-+.++++++++.|..
T Consensus 343 wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 343 WKGNVRELKNLIERAVI 359 (368)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 44456888888887654
No 193
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.56 E-value=5.2e-07 Score=100.17 Aligned_cols=183 Identities=17% Similarity=0.167 Sum_probs=110.1
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccccc-----c--c
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVV-----S--Q 368 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~-----~--~ 368 (957)
+.+.|-+.+.+.|.+ +.. ..++|+||+|+|||+|++.+++..+..++.+++.... + .
T Consensus 13 ~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHH
T ss_pred HHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHH
Confidence 457899988887776 411 4799999999999999999999887777788765430 0 0
Q ss_pred ccch---------------------------------------hHHHHHHHHHHHhcc--CCeEEEEcCccccccCCcCC
Q 002169 369 NYGE---------------------------------------SEQALHEVFDSASQS--APAVVFIDELDAIAPARKDG 407 (957)
Q Consensus 369 ~~ge---------------------------------------~e~~i~~vf~~a~~~--~p~IL~IDEiD~l~~~~~~~ 407 (957)
.... ....+..+++..... .|.+|+|||++.+.......
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 0000 001223344333322 38899999999886421111
Q ss_pred CchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhh-----hh--CCCCcceeeeecCCCHHHHHHHHHHHHcCCC
Q 002169 408 GEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPA-----LR--RPGRLDREIEIAVPSPAQRLEILHALLSGME 480 (957)
Q Consensus 408 ~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~a-----l~--r~gRfd~~I~i~~P~~~~r~~Il~~~l~~~~ 480 (957)
+...|..+++. ..++.+|++++....+... .. -.+|+...+.++..+.++..+++...+...+
T Consensus 157 -------~~~~l~~~~~~---~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~ 226 (357)
T 2fna_A 157 -------LLPALAYAYDN---LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD 226 (357)
T ss_dssp -------CHHHHHHHHHH---CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHHc---CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC
Confidence 11222223332 1367777777653222211 00 1236666799999999999999988765433
Q ss_pred CCCChHHHHHHHHHcCCCcHHHHHHHH
Q 002169 481 HSLLDSEVEYLSMATHGFVGADLAALC 507 (957)
Q Consensus 481 ~~l~~~~l~~La~~t~g~~gaDi~~l~ 507 (957)
....+. ..+...+.|+.. -+..++
T Consensus 227 ~~~~~~--~~i~~~t~G~P~-~l~~~~ 250 (357)
T 2fna_A 227 IDFKDY--EVVYEKIGGIPG-WLTYFG 250 (357)
T ss_dssp CCCCCH--HHHHHHHCSCHH-HHHHHH
T ss_pred CCCCcH--HHHHHHhCCCHH-HHHHHH
Confidence 333332 777888888654 344443
No 194
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.54 E-value=1.3e-07 Score=82.35 Aligned_cols=56 Identities=25% Similarity=0.415 Sum_probs=51.9
Q ss_pred cCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 461 AVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 461 ~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
|.|+.++|.+||+.+++++... .+.+++.||..|.||+|+||.++|++|++.++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999998765 6778999999999999999999999999999876
No 195
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.51 E-value=3.1e-06 Score=93.68 Aligned_cols=190 Identities=19% Similarity=0.256 Sum_probs=112.2
Q ss_pred CccccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcc----
Q 002169 642 KVKWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELF---- 717 (957)
Q Consensus 642 ~v~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~---- 717 (957)
...-+.++|.++..+.|.+.+.. ...++++||+|+|||++++.+++..+ .+.+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 34456788999988888777641 15799999999999999999999875 5555543211
Q ss_pred --------c---ccccc---------------------hHHHHHHHHH----HHHhCCCeEEEEeCCchhhhhcCCCCCC
Q 002169 718 --------S---KWVGE---------------------SEKAVRSLFA----KARANAPSIIFFDEIDGLAAIRGKESDG 761 (957)
Q Consensus 718 --------~---~~vg~---------------------~~~~ir~~f~----~A~~~~p~ILfiDEid~l~~~r~~~~~~ 761 (957)
. ..++. ....+..+++ .+....|.+|+|||++.+.....
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----- 145 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----- 145 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-----
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-----
Confidence 0 00000 0011222222 22222389999999998753100
Q ss_pred CcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC---------ChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcC
Q 002169 762 VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI---------DPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKI 832 (957)
Q Consensus 762 ~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i---------d~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~ 832 (957)
.....++..+-..++.. .++.+|+++.....+ ...+. ||+...+.+++.+.++..++++..+...
T Consensus 146 -~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~ 219 (350)
T 2qen_A 146 -RGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREV 219 (350)
T ss_dssp -TTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred -cchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHc
Confidence 01223333333333322 366677765432111 11222 4666688999999999999998877655
Q ss_pred CCC-CcccHHHHHHHccCCcHHHHHHHHH
Q 002169 833 PCS-SDVNIRELACLSEGCTGADISLICR 860 (957)
Q Consensus 833 ~~~-~~~~l~~la~~t~g~sg~dl~~l~~ 860 (957)
+.. .+.....+...+.|+. .-+..++.
T Consensus 220 ~~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 220 NLDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp TCCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 433 2345677888888854 34444443
No 196
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.49 E-value=2.1e-07 Score=96.00 Aligned_cols=126 Identities=20% Similarity=0.333 Sum_probs=80.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHH--------cC-CcEEEEeccccccccc----------chhHH--HHHHHHHHH--hc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHD--------SG-VNLFTVNGPEVVSQNY----------GESEQ--ALHEVFDSA--SQ 386 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~--------l~-~~~i~i~~~~l~~~~~----------ge~e~--~i~~vf~~a--~~ 386 (957)
..+|++|+||||||++|...+.. .| .+++..+..++.-... ..... .....++.+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 46789999999999999886533 24 5555566554433221 00000 012233331 23
Q ss_pred cCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCC
Q 002169 387 SAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPS 464 (957)
Q Consensus 387 ~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~ 464 (957)
...+||+|||++.+.+.+....+.. .++..+.. .+..+..+|++|++++.++.+++. |++..+++..|.
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~------rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIP------ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCC------HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred cCceEEEEEChhhhccCccccchhH------HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 4578999999999976553222211 24455543 235567889999999999999998 999888887754
No 197
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.47 E-value=1.4e-07 Score=106.65 Aligned_cols=121 Identities=18% Similarity=0.179 Sum_probs=79.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCcccccc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAP 402 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~ 402 (957)
++++++++.++|+||||+||||+++++++..+..++.+..++- .....+..+| +..++++||++.+..
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~~~------q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGVAI------DQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGGGT------TCSCEEETTCCCSTT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHHhc------chhHHHHHHHHHHHH
Confidence 3588999999999999999999999999988776554333220 0111222222 345789999998875
Q ss_pred -CCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecC
Q 002169 403 -ARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAV 462 (957)
Q Consensus 403 -~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~ 462 (957)
.+.-...... .....+.+.+++ .+.|++++|+++.+ +++.+|||++..+....
T Consensus 231 ~~r~l~~~~~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 231 ESRDLPSGQGI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTCCCCSHH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHhhccccCcc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 2221111110 012344555554 45678899999999 78999999988776643
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.46 E-value=1.5e-07 Score=96.67 Aligned_cols=70 Identities=31% Similarity=0.421 Sum_probs=47.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccccchhH-HHHHHHHHHHhccCCeEEEEcCcccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQNYGESE-QALHEVFDSASQSAPAVVFIDELDAI 400 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~~ge~e-~~i~~vf~~a~~~~p~IL~IDEiD~l 400 (957)
+.+++|+||||||||++|++++..+ +..++.++++++......... ..+..+++... .+.+|+|||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 3799999999999999999999877 667888888776543211100 01122233322 2359999999765
No 199
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.44 E-value=3e-07 Score=82.05 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 464 SPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 464 ~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+.++|.+||+.+++++++. .+.+++.||..|+||+|+||.++|++|++.|+++
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~ 54 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA 54 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence 5678999999999998876 6788999999999999999999999999999986
No 200
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.38 E-value=9.9e-08 Score=105.29 Aligned_cols=71 Identities=15% Similarity=0.285 Sum_probs=45.5
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhC----CcEEEEeCCCcccccccch-HHHHHHHHHHHHhCCCeEEEEeCCchh
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAG----LNFLAVKGPELFSKWVGES-EKAVRSLFAKARANAPSIIFFDEIDGL 751 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~----~~~i~v~~~~l~~~~vg~~-~~~ir~~f~~A~~~~p~ILfiDEid~l 751 (957)
...+++|+||||||||+||+++|.++. .+++.+..++++..+.... .......+.... .+.+|||||++..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 357899999999999999999998654 6777777766544322111 111122233332 2359999999754
No 201
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.38 E-value=2.2e-07 Score=95.89 Aligned_cols=127 Identities=18% Similarity=0.196 Sum_probs=79.8
Q ss_pred CcceeeCCCCChhhHHHHHHHHH--------hC-CcEEEEeCCCcccccc----------cc-----hHHHHHHHHHHHH
Q 002169 681 TGILMFGPPGCSKTLMARAVASE--------AG-LNFLAVKGPELFSKWV----------GE-----SEKAVRSLFAKAR 736 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~--------~~-~~~i~v~~~~l~~~~v----------g~-----~~~~ir~~f~~A~ 736 (957)
.-.+++|+||+|||++|..++.. .| .+++..+..++.-.+. .. ....+...+..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~- 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP- 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc-
Confidence 35789999999999999886433 34 5665666665533221 11 112222222112
Q ss_pred hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCC
Q 002169 737 ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPP 816 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P 816 (957)
.+..+||+|||++.+.+.+.... +.. .++..+..- ...+.-||++|+.++.++.++++ |++..++++.|
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~---e~~-----rll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGS---KIP-----ENVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTC---CCC-----HHHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred ccCceEEEEEChhhhccCccccc---hhH-----HHHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 23467999999999875542211 111 255555532 23466788889989999999988 99988888775
Q ss_pred CHH
Q 002169 817 NET 819 (957)
Q Consensus 817 ~~~ 819 (957)
...
T Consensus 154 ~~~ 156 (199)
T 2r2a_A 154 KMG 156 (199)
T ss_dssp SSC
T ss_pred ccC
Confidence 543
No 202
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.34 E-value=3e-06 Score=85.77 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=23.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNL 357 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~ 357 (957)
.+.|+||+|+|||||++++++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 578999999999999999999886544
No 203
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.29 E-value=5.6e-07 Score=79.27 Aligned_cols=53 Identities=23% Similarity=0.408 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 464 SPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 464 ~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
+.++|.+||+.+++++++. ++.+++.+|..|+||+|+||.++|++|++.|+++
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~ 54 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVRE 54 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTS
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 6789999999999998876 6778999999999999999999999999888654
No 204
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.26 E-value=9e-07 Score=90.90 Aligned_cols=112 Identities=18% Similarity=0.214 Sum_probs=65.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccccccchhHHHHHHHHHHHhccCCeEEEEcCccccccCC
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVSQNYGESEQALHEVFDSASQSAPAVVFIDELDAIAPAR 404 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~~~~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~ 404 (957)
+++..++++||||||||||++|.++|+.+.-.++.+..+. ..+ .++.+. ...|++|||+|.-
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~l~--~~kIiiLDEad~~---- 115 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEPLT--DTKVAMLDDATTT---- 115 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGGGT--TCSSEEEEEECHH----
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhcccC--CCCEEEEECCCch----
Confidence 4555678999999999999999999999865443221100 000 011111 2349999999732
Q ss_pred cCCCchHHHHHHHHHHHHhhccc-----cC------CCeEEEEecCCC---CCchhhhhCCCCcceeeeecCC
Q 002169 405 KDGGEELSQRMVATLLNLMDGVC-----RT------DGVLVIAATNRP---DSIEPALRRPGRLDREIEIAVP 463 (957)
Q Consensus 405 ~~~~~~~~~~i~~~Ll~~ld~l~-----~~------~~v~vI~ttN~~---~~ld~al~r~gRfd~~I~i~~P 463 (957)
..+.+...+.+.+++.. .. ....+|.|||.. +..-+.+.+ |+. ++.|+.|
T Consensus 116 ------~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~~ 179 (212)
T 1tue_A 116 ------CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPNA 179 (212)
T ss_dssp ------HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCSC
T ss_pred ------hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCCC
Confidence 12333445677777731 01 234788899863 233356666 663 3555533
No 205
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.23 E-value=7.8e-07 Score=98.12 Aligned_cols=71 Identities=25% Similarity=0.356 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEecccccccccchh-HHHHHHHHHHHhccCCeEEEEcCcccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNGPEVVSQNYGES-EQALHEVFDSASQSAPAVVFIDELDAI 400 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~~~l~~~~~ge~-e~~i~~vf~~a~~~~p~IL~IDEiD~l 400 (957)
.+.+++|+||||||||+||+++|..+ +..++.+++++++....... ......+++... .+.+|+|||++..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 36899999999999999999999765 46778888776654322110 111122222222 3469999999654
No 206
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.22 E-value=3.6e-06 Score=96.44 Aligned_cols=200 Identities=15% Similarity=0.076 Sum_probs=111.8
Q ss_pred ccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHH-HHHcCCcEEEEec--c---ccccccc
Q 002169 297 KLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLC-AHDSGVNLFTVNG--P---EVVSQNY 370 (957)
Q Consensus 297 ~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaral-A~~l~~~~i~i~~--~---~l~~~~~ 370 (957)
.|.|.+.+|..|.=.+ ....- .++..-+|||.|+||| ||++|+++ +..+....+. .+ + .+.....
T Consensus 214 pI~G~e~vK~aLll~L----~GG~~---k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft-~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 214 PLPGAEEVGKMLALQL----FSCVG---KNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYV-DLRRTELTDLTAVLK 284 (506)
T ss_dssp CSTTCHHHHHHHHHHH----TTCCS---SGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEE-EGGGCCHHHHSEEEE
T ss_pred ccCCCHHHHHHHHHHH----cCCcc---ccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEe-cCCCCCccCceEEEE
Confidence 3788877655443331 11000 0222348999999999 99999999 7766553332 22 1 1111100
Q ss_pred ch--hHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc-------ccCCCeEEEEecCCC
Q 002169 371 GE--SEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV-------CRTDGVLVIAATNRP 441 (957)
Q Consensus 371 ge--~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l-------~~~~~v~vI~ttN~~ 441 (957)
+. .... ...+..|.. .++|+||++.+. ......|++.|+.- .-..++.||+|+|+.
T Consensus 285 ~~tG~~~~-~G~l~LAdg---Gvl~lDEIn~~~-----------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 285 EDRGWALR-AGAAVLADG---GILAVDHLEGAP-----------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPG 349 (506)
T ss_dssp ESSSEEEE-ECHHHHTTT---SEEEEECCTTCC-----------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred cCCCcccC-CCeeEEcCC---CeeehHhhhhCC-----------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence 00 0000 011223333 499999998773 34566788887752 113468999999987
Q ss_pred C-----------CchhhhhCCCCcceee-eecCCCHHH-------------HHHHHHHHHc--CCCCCCChHHHHHHHH-
Q 002169 442 D-----------SIEPALRRPGRLDREI-EIAVPSPAQ-------------RLEILHALLS--GMEHSLLDSEVEYLSM- 493 (957)
Q Consensus 442 ~-----------~ld~al~r~gRfd~~I-~i~~P~~~~-------------r~~Il~~~l~--~~~~~l~~~~l~~La~- 493 (957)
+ .|++++++ |||-.+ .++.|+.+. ..+.+. +.+ .....+++...+++..
T Consensus 350 ~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHHHHHHHH
T ss_pred cccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHHHHHHHH
Confidence 5 78889998 998743 445555433 222222 222 3344556655444331
Q ss_pred ----------------HcCCCcHHHHHHHHHHHHHHHHHHhccccc
Q 002169 494 ----------------ATHGFVGADLAALCNEAALVCLRRYSKIQT 523 (957)
Q Consensus 494 ----------------~t~g~~gaDi~~l~~~A~~~a~rr~~~~~~ 523 (957)
...|.+.+.+.++++-|...|.-+.+....
T Consensus 427 y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 427 YETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred HHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 123678888999999887777766655433
No 207
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.18 E-value=5.6e-06 Score=83.74 Aligned_cols=122 Identities=19% Similarity=0.236 Sum_probs=67.0
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC---------------------------------cccccccc--hHH
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE---------------------------------LFSKWVGE--SEK 726 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~---------------------------------l~~~~vg~--~~~ 726 (957)
.+.|+||||+||||++++|++.++..+.-....+ ...++... ..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSgG~ 81 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE 81 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCcCHHH
Confidence 3789999999999999999998764332111100 01111111 123
Q ss_pred HHHHHHHHH-----HhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC--Ch
Q 002169 727 AVRSLFAKA-----RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI--DP 799 (957)
Q Consensus 727 ~ir~~f~~A-----~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i--d~ 799 (957)
..+..+..| ....|.+|++||++-.. .........+...++. .+..+|++||+.+.. -.
T Consensus 82 ~qr~~la~aa~~~~l~~~p~llilDEigp~~----------~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~ 147 (178)
T 1ye8_A 82 ELAIPILERAYREAKKDRRKVIIIDEIGKME----------LFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVK 147 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTG----------GGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHH
T ss_pred HHHHHHHhhccccccccCCCEEEEeCCCCcc----------cCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHH
Confidence 345566664 67889999999954221 1223344556666654 245566777632222 22
Q ss_pred hhhCCCCc-ceecccCCCCHH
Q 002169 800 ALLRPGRF-DRLLYVGPPNET 819 (957)
Q Consensus 800 aLlr~gRf-d~~i~~~~P~~~ 819 (957)
.+.+ |- .+++.+...+.+
T Consensus 148 ~i~~--r~~~~i~~~~~~~r~ 166 (178)
T 1ye8_A 148 EIRR--LPGAVLIELTPENRD 166 (178)
T ss_dssp HHHT--CTTCEEEECCTTTTT
T ss_pred HHHh--cCCcEEEEecCcCHH
Confidence 3444 31 135666555543
No 208
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.18 E-value=1.6e-06 Score=89.04 Aligned_cols=108 Identities=14% Similarity=0.177 Sum_probs=61.4
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCcccccccchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcC
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRG 756 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~ 756 (957)
.+..++++||||||||||++|.++|+.+....+.+.... ...| +..+ ....|++|||+|.-
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~-s~f~-----------l~~l--~~~kIiiLDEad~~----- 115 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST-SHFW-----------LEPL--TDTKVAMLDDATTT----- 115 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS-SCGG-----------GGGG--TTCSSEEEEEECHH-----
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc-chhh-----------hccc--CCCCEEEEECCCch-----
Confidence 444567999999999999999999999865433221100 0001 0111 12349999999832
Q ss_pred CCCCCCcchHHHH-HHHHHHHhccc------cC-----CcEEEEEecCCC---CCCChhhhCCCCcceecccC
Q 002169 757 KESDGVSVSDRVM-SQLLVELDGLH------QR-----VNVTVIAATNRP---DKIDPALLRPGRFDRLLYVG 814 (957)
Q Consensus 757 ~~~~~~~~~~~v~-~~LL~~ld~~~------~~-----~~v~VI~aTN~~---~~id~aLlr~gRfd~~i~~~ 814 (957)
..+.+ ..+-+.|++.. .+ ...-+|+|||.. +..-+.|.+ |+. .+.|+
T Consensus 116 --------~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~ 177 (212)
T 1tue_A 116 --------CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFP 177 (212)
T ss_dssp --------HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECC
T ss_pred --------hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcC
Confidence 11222 23445566631 11 123578899864 223356777 763 55665
No 209
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.17 E-value=1.7e-05 Score=88.40 Aligned_cols=180 Identities=13% Similarity=0.099 Sum_probs=117.6
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CC-cEEEEeCCCcccccccchHHHHHHHHHHHH----hCCCeEEEEeCCch
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GL-NFLAVKGPELFSKWVGESEKAVRSLFAKAR----ANAPSIIFFDEIDG 750 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~-~~i~v~~~~l~~~~vg~~~~~ir~~f~~A~----~~~p~ILfiDEid~ 750 (957)
....+|||||+|+||++.++.|+..+ +. ++..+... + ...++.+++.+. .+...|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 45679999999999999999998765 22 22222111 1 123455555543 34567999999996
Q ss_pred -hhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC------CCChhhhCCCCcceecccCCCCHHHHHH
Q 002169 751 -LAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD------KIDPALLRPGRFDRLLYVGPPNETDREE 823 (957)
Q Consensus 751 -l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~------~id~aLlr~gRfd~~i~~~~P~~~er~~ 823 (957)
+. ....+.|+..++.. ..++++|++|+.++ .+-+++.+ |+ .++.+.+++..+...
T Consensus 88 kl~-------------~~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 88 GPN-------------AAINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp CCC-------------TTHHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred CCC-------------hHHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 52 23456788888754 33566666665543 35567777 65 578899999999999
Q ss_pred HHHHHHhcCCCCCc-ccHHHHHHHccCCcHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhhCCC
Q 002169 824 IFRIHLRKIPCSSD-VNIRELACLSEGCTGADISLICREAAISAIEENLDASRITMQHLKTAIRHVQPS 891 (957)
Q Consensus 824 Il~~~l~~~~~~~~-~~l~~la~~t~g~sg~dl~~l~~eA~~~a~~~~~~~~~It~~d~~~al~~~~p~ 891 (957)
.++..+++.++.-+ ..+..+++.+.| +.+++.+.++..+..+ +...||.++++..+......
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~-----~~~~It~e~V~~~~~~~~~~ 212 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW-----PDGKLTLPRVEQAVNDAAHF 212 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC-----TTCEECHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc-----CCCCCCHHHHHHHHhhhhcC
Confidence 99998887775433 345667777776 5566666665554432 23468888887776665543
No 210
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.10 E-value=3.8e-06 Score=87.46 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=68.1
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---------CCcEEEEeCCCcccc--------cccc---------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSK--------WVGE--------------- 723 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---------~~~~i~v~~~~l~~~--------~vg~--------------- 723 (957)
++.+..-+.|+||||+||||++++|+... +...+.++....... ..+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 45555569999999999999999999854 223666666442110 0000
Q ss_pred h----HHHHHHHHHHHH-----hCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 724 S----EKAVRSLFAKAR-----ANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 724 ~----~~~ir~~f~~A~-----~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
. ...+..+.+.+. ...|.+|+|||+..+.+......+......+.+.+++..+..+....++.||++||..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 0 011223333333 5689999999999886553222110011112233445555444334478899999965
Q ss_pred CC
Q 002169 795 DK 796 (957)
Q Consensus 795 ~~ 796 (957)
+.
T Consensus 181 ~~ 182 (231)
T 4a74_A 181 AN 182 (231)
T ss_dssp --
T ss_pred cC
Confidence 54
No 211
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.10 E-value=2.9e-06 Score=91.47 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=39.5
Q ss_pred HHHHHHHHhC------CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARAN------APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~------~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|... .|.+|++||+.+.++. ....+++..+..+....+..||++||+.+.
T Consensus 149 Rv~iAraL~~~~~~~~~p~lLllDEPts~LD~------------~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~ 210 (266)
T 4g1u_C 149 RVQLARVLAQLWQPQPTPRWLFLDEPTSALDL------------YHQQHTLRLLRQLTRQEPLAVCCVLHDLNL 210 (266)
T ss_dssp HHHHHHHHHHTCCSSCCCEEEEECCCCSSCCH------------HHHHHHHHHHHHHHHHSSEEEEEECSCHHH
T ss_pred HHHHHHHHhcccccCCCCCEEEEeCccccCCH------------HHHHHHHHHHHHHHHcCCCEEEEEEcCHHH
Confidence 6778888887 9999999999865432 333344455554444456789999998754
No 212
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.09 E-value=8e-06 Score=85.79 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=66.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHH--c-------CCcEEEEeccccccc--------cc-----------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHD--S-------GVNLFTVNGPEVVSQ--------NY----------------- 370 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~--l-------~~~~i~i~~~~l~~~--------~~----------------- 370 (957)
|++++..++|+||||+|||||++.++.. + +...+.+++.+.... ..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 6888999999999999999999999984 3 445677776541100 00
Q ss_pred --chhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHH--HHHHHHHHHHhhccccCCCeEEEEecCCCC
Q 002169 371 --GESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELS--QRMVATLLNLMDGVCRTDGVLVIAATNRPD 442 (957)
Q Consensus 371 --ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~--~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~ 442 (957)
.+....+..+.+.+....|.+|+|||+..+....-.+..+.. ++....++..+..+....++.||++++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~ 175 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA 175 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC----
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee
Confidence 011112222333444567999999998877643211101111 222444444444444445678888876543
No 213
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.08 E-value=5.9e-06 Score=89.49 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=28.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 28 NMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46778899999999999999999999998764
No 214
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.07 E-value=3.5e-06 Score=95.10 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=28.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||+++||+...
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 46778899999999999999999999998764
No 215
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.06 E-value=1.9e-06 Score=93.34 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.||++||+.+.++. .....++..+..+....+.+||++||+.+.+
T Consensus 151 Rv~iAraL~~~P~lLlLDEPts~LD~------------~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEPTAGLDP------------MGVSEIMKLLVEMQKELGITIIIATHDIDIV 207 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCH------------HHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred HHHHHHHHHcCCCEEEEECccccCCH------------HHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 67788888999999999999976543 2223344444443312267899999998764
No 216
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.05 E-value=9.2e-06 Score=85.65 Aligned_cols=114 Identities=23% Similarity=0.213 Sum_probs=67.3
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHH--HH--hCCcEEEEeCCCcccc------ccc-----------------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVA--SE--AGLNFLAVKGPELFSK------WVG----------------------- 722 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA--~~--~~~~~i~v~~~~l~~~------~vg----------------------- 722 (957)
++++..-++|+||||+|||||+++|+ .. .+...+.+........ .+|
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 45566669999999999999999998 33 2444444444321100 000
Q ss_pred -------------chHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEE
Q 002169 723 -------------ESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789 (957)
Q Consensus 723 -------------~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~ 789 (957)
........+...+....|.+|+|||+.++.+.... .....+.+..++..+. ..+.+||+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d----~~~~~~~l~~l~~~l~----~~g~tii~ 177 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE----ERKIREVLLKLNTILL----EMGVTTIL 177 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS----GGGHHHHHHHHHHHHH----HHCCEEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCC----HHHHHHHHHHHHHHHH----HCCCeEEE
Confidence 01122233444455678999999999988764321 1223344555555553 23678999
Q ss_pred ecCCCCCC
Q 002169 790 ATNRPDKI 797 (957)
Q Consensus 790 aTN~~~~i 797 (957)
+||..+..
T Consensus 178 vtH~~~~~ 185 (251)
T 2ehv_A 178 TTEAPDPQ 185 (251)
T ss_dssp EECCC---
T ss_pred EECCCCCC
Confidence 99987765
No 217
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.04 E-value=1.4e-05 Score=82.53 Aligned_cols=118 Identities=19% Similarity=0.148 Sum_probs=68.4
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCccc--c-------------------cccc--hHHHHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFS--K-------------------WVGE--SEKAVRSLF 732 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l~~--~-------------------~vg~--~~~~ir~~f 732 (957)
++++..-++|+||||+|||++++.+|...+.+.+.++...-+. . ++.. .....+..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 4566666999999999999999999986677777777654110 0 0000 011122233
Q ss_pred HHHH--hC-CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 733 AKAR--AN-APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 733 ~~A~--~~-~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
+.++ .. .|.+|+|||+..+.+..... ....+.+..++..|..+....++.||+++|.....
T Consensus 96 ~~~~~l~~~~~~lliiD~~~~~l~~~~~~----~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~ 159 (220)
T 2cvh_A 96 GSLKKTVDSNFALVVVDSITAHYRAEENR----SGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDS 159 (220)
T ss_dssp HHHHHHCCTTEEEEEEECCCCCTTGGGGS----STTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred HHHHHHhhcCCCEEEEcCcHHHhhhcCch----HHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcC
Confidence 3322 22 48999999999886442111 11123334444444444333456777888765543
No 218
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.03 E-value=5.5e-06 Score=92.82 Aligned_cols=32 Identities=38% Similarity=0.473 Sum_probs=28.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||+++||+...
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 46788899999999999999999999998764
No 219
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.03 E-value=9.1e-06 Score=84.55 Aligned_cols=119 Identities=14% Similarity=0.157 Sum_probs=67.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcC---------CcEEEEeccccccc-c-------c-----------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSG---------VNLFTVNGPEVVSQ-N-------Y----------------- 370 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~---------~~~i~i~~~~l~~~-~-------~----------------- 370 (957)
|++++..+.|+||+|+|||||++.++...- ...+.+++.+.... . .
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 788899999999999999999999998542 23566665432110 0 0
Q ss_pred --chhHHHHHHHHHHHh-----ccCCeEEEEcCccccccCCcCCCchHHH--HHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 371 --GESEQALHEVFDSAS-----QSAPAVVFIDELDAIAPARKDGGEELSQ--RMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 371 --ge~e~~i~~vf~~a~-----~~~p~IL~IDEiD~l~~~~~~~~~~~~~--~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
.+....+..+.+.+. ...|.+|+|||+.........+.+...+ +....++..+..+....++.||++++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 000111222233333 5679999999976654322222112222 2233455555554444577888888755
Q ss_pred CC
Q 002169 442 DS 443 (957)
Q Consensus 442 ~~ 443 (957)
+.
T Consensus 181 ~~ 182 (231)
T 4a74_A 181 AN 182 (231)
T ss_dssp --
T ss_pred cC
Confidence 44
No 220
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.01 E-value=6.4e-06 Score=87.14 Aligned_cols=55 Identities=25% Similarity=0.284 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
|..+++|....|.||++||+.+.++. .....++..+..+....+.+||++||+++
T Consensus 153 Rv~iAral~~~p~llllDEPts~LD~------------~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 153 RVAIARALANNPPIILADQPTWALDS------------KTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCH------------HHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 67788888899999999999976543 22333444444443333678999999764
No 221
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.00 E-value=9.4e-07 Score=95.37 Aligned_cols=31 Identities=35% Similarity=0.478 Sum_probs=28.0
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 31 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 31 SLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4677889999999999999999999999765
No 222
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.99 E-value=7.2e-06 Score=92.52 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+-++ .....+++.+|..+....+..+|++||+.+.
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD------------~~~~~~l~~~l~~l~~~~g~tii~vTHd~~e 196 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLD------------AALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSC------------HHHHHHHHHHHHHHHHHHCCEEEEECSCHHH
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCC------------HHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 7778888889999999999986543 2333445555555444447889999998765
No 223
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.99 E-value=2.8e-06 Score=85.18 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHH----HHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 725 EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDR----VMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 725 ~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~----v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
.+.-+..+++|....|.+|++||+.+.++.+........+... ....+...+..+... +..+|++||+++.+
T Consensus 87 g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~ 162 (171)
T 4gp7_A 87 ARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEV 162 (171)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHh
Confidence 3344667788888899999999999887655221111122222 334455555555434 67889999977653
No 224
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.98 E-value=9.8e-06 Score=84.24 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=62.1
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCcccc--------------c------------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSK--------------W------------------ 720 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~--------------~------------------ 720 (957)
++.+..-++|+||||+||||+++.++... +...+.+........ +
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 34555668999999999999999998653 444444443221000 0
Q ss_pred -c---cchHHHHHHHHHHHHhCCCe--EEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 721 -V---GESEKAVRSLFAKARANAPS--IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 721 -v---g~~~~~ir~~f~~A~~~~p~--ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
. .......+.+.+.+....|. +|+|||+..+.... .....+++. .+..+....++.||++||..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d------~~~~~~~~~----~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK------PAMARKISY----YLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC------GGGHHHHHH----HHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC------HHHHHHHHH----HHHHHHHhCCCeEEEEeccC
Confidence 0 01122233444555556788 99999999875211 112233333 33333233478899999876
No 225
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.98 E-value=8.2e-06 Score=91.49 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. ....+++..|..+....+.+||++||+.+.
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~------------~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~ 226 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDP------------ATTRSILELLKDINRRLGLTILLITHEMDV 226 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHHSCCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCH------------HHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 77788888999999999999966533 333345555555444447889999998765
No 226
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.98 E-value=5.7e-06 Score=92.69 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. ....+++.++..+....+.++|++||+.+.
T Consensus 146 RValArAL~~~P~lLLLDEPts~LD~------------~~r~~l~~~l~~~~~~~g~tvi~vTHd~~e 201 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEPFSALDE------------QLRRQIREDMIAALRANGKSAVFVSHDREE 201 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCH------------HHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 77788999999999999999866543 222233333333323347889999998764
No 227
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.98 E-value=2.2e-05 Score=80.99 Aligned_cols=40 Identities=30% Similarity=0.324 Sum_probs=34.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccc
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPE 364 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~ 364 (957)
|+.++.-++|+||||+||||+++.+|...+..++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 6888999999999999999999999985566777777543
No 228
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.97 E-value=1.2e-05 Score=84.49 Aligned_cols=120 Identities=15% Similarity=0.116 Sum_probs=66.5
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHH--h-------CCcEEEEeCCCcccc--------ccc---------------c
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASE--A-------GLNFLAVKGPELFSK--------WVG---------------E 723 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~--~-------~~~~i~v~~~~l~~~--------~vg---------------~ 723 (957)
++++..-++|+||||+|||++++.+|.. . +...+.++..+.+.. .++ .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4556666999999999999999999985 2 456777776552110 000 0
Q ss_pred hHH----HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchH--HHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 724 SEK----AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD--RVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 724 ~~~----~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~--~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
... .+..+.+.+....|.+|+|||+..+.+..-... ..... +.+..++..+..+....++.||+++|.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~ 177 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR--GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV 177 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC---------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence 111 122234444556899999999998864321100 01121 1244455555544444478888888865543
No 229
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.96 E-value=8.6e-06 Score=91.32 Aligned_cols=112 Identities=22% Similarity=0.335 Sum_probs=70.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCc--EEEEecccccc------------------------c-cc-----
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVN--LFTVNGPEVVS------------------------Q-NY----- 370 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~--~i~i~~~~l~~------------------------~-~~----- 370 (957)
++.+.+++.+.|.||+|+|||||++++++..... -+.+++.++.. . .+
T Consensus 48 sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~ 127 (366)
T 3tui_C 48 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA 127 (366)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHH
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHH
Confidence 4678899999999999999999999999766332 13344332210 0 00
Q ss_pred ------c----hhHHHHHHHHH--------------------------HHhccCCeEEEEcCccccccCCcCCCchHHHH
Q 002169 371 ------G----ESEQALHEVFD--------------------------SASQSAPAVVFIDELDAIAPARKDGGEELSQR 414 (957)
Q Consensus 371 ------g----e~e~~i~~vf~--------------------------~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~ 414 (957)
+ +....+.++++ .|....|.||++||-- +..+..
T Consensus 128 ~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPT----------s~LD~~ 197 (366)
T 3tui_C 128 LPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQAT----------SALDPA 197 (366)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTT----------TTSCHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC----------ccCCHH
Confidence 0 11223334443 3556779999999942 122334
Q ss_pred HHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 415 MVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 415 i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
....+++++..+....+..||++|+..+.+
T Consensus 198 ~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~ 227 (366)
T 3tui_C 198 TTRSILELLKDINRRLGLTILLITHEMDVV 227 (366)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 455666777766555578889999765443
No 230
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.95 E-value=7.4e-06 Score=91.76 Aligned_cols=32 Identities=41% Similarity=0.520 Sum_probs=28.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||+++||+...
T Consensus 35 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 35 SFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 36678899999999999999999999998764
No 231
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.95 E-value=1.9e-05 Score=81.99 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=63.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc--------------c------------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ--------------N------------------ 369 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~--------------~------------------ 369 (957)
|+.++..++|+||||+|||||++.++..+ +..++.++....... .
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 67889999999999999999999999654 445554443210000 0
Q ss_pred ----cchhHHHHHHHHHHHhccCCe--EEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 370 ----YGESEQALHEVFDSASQSAPA--VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 370 ----~ge~e~~i~~vf~~a~~~~p~--IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
..........+.+.+....|. +|+|||+..+.... ...... ++..+..+....++.+|++++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d----~~~~~~----~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK----PAMARK----ISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC----GGGHHH----HHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC----HHHHHH----HHHHHHHHHHhCCCeEEEEeccC
Confidence 001223333344444556788 99999998775321 111223 33334333334577888888765
No 232
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.94 E-value=8.3e-06 Score=91.62 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||++++|+...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 36678899999999999999999999998764
No 233
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.93 E-value=9.5e-06 Score=91.47 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||++++|+...
T Consensus 31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 46778899999999999999999999998663
No 234
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.92 E-value=8.4e-06 Score=91.47 Aligned_cols=32 Identities=31% Similarity=0.332 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||++++|+...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 46678899999999999999999999998763
No 235
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.91 E-value=6.5e-06 Score=87.08 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46788999999999999999999999997653
No 236
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.91 E-value=1.6e-05 Score=83.51 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=28.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 24 SLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36678899999999999999999999997764
No 237
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.90 E-value=9.4e-06 Score=91.59 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||+++||+...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 36678899999999999999999999998764
No 238
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.90 E-value=2.9e-05 Score=81.84 Aligned_cols=114 Identities=25% Similarity=0.324 Sum_probs=64.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHH--HH--cCCcEEEEeccccccc------ccc-----------------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCA--HD--SGVNLFTVNGPEVVSQ------NYG----------------------- 371 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA--~~--l~~~~i~i~~~~l~~~------~~g----------------------- 371 (957)
+++++..++|.||+|+|||||+++++ .. .+...+.+.+...... ..|
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 68889999999999999999999998 33 2444444443221100 000
Q ss_pred -------------hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec
Q 002169 372 -------------ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438 (957)
Q Consensus 372 -------------e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt 438 (957)
........+...+....|.+|++||+-.+.....+ ....++.+..++..+ .. .+..+|++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d--~~~~~~~l~~l~~~l---~~-~g~tii~vt 179 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE--ERKIREVLLKLNTIL---LE-MGVTTILTT 179 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS--GGGHHHHHHHHHHHH---HH-HCCEEEEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCC--HHHHHHHHHHHHHHH---HH-CCCeEEEEE
Confidence 11222333334444578999999998766532111 112233333444433 22 366788888
Q ss_pred CCCCCc
Q 002169 439 NRPDSI 444 (957)
Q Consensus 439 N~~~~l 444 (957)
+..+..
T Consensus 180 H~~~~~ 185 (251)
T 2ehv_A 180 EAPDPQ 185 (251)
T ss_dssp CCC---
T ss_pred CCCCCC
Confidence 876655
No 239
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.89 E-value=1.3e-05 Score=84.24 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
|..+++|....|.+|++||+.+.++. .....++..+..+... +..||++||+.+
T Consensus 148 rv~laral~~~p~lllLDEPt~~LD~------------~~~~~~~~~l~~l~~~-g~tvi~vtHd~~ 201 (224)
T 2pcj_A 148 RVAIARALANEPILLFADEPTGNLDS------------ANTKRVMDIFLKINEG-GTSIVMVTHERE 201 (224)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTCCH------------HHHHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCH------------HHHHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence 66678888889999999999866543 2223344444443333 678999999754
No 240
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.89 E-value=1.4e-05 Score=79.96 Aligned_cols=120 Identities=22% Similarity=0.272 Sum_probs=64.6
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHH------------HHHHcCCcE--EEEec------------------cccccc-cc
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARL------------CAHDSGVNL--FTVNG------------------PEVVSQ-NY 370 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLara------------lA~~l~~~~--i~i~~------------------~~l~~~-~~ 370 (957)
+.+.+++-+.|+||+|+|||||+++ +.+.+...- ..+.+ ..+... +.
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 83 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNV 83 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 5567888999999999999999994 433321100 00000 000000 00
Q ss_pred chhHHHHHHHHHHHhccCCeEEEEcCc----cccccCCc--CCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 371 GESEQALHEVFDSASQSAPAVVFIDEL----DAIAPARK--DGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 371 ge~e~~i~~vf~~a~~~~p~IL~IDEi----D~l~~~~~--~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
....++-+-.+..+....|.+|++||- |.-...|. ......-.+....+...+..+... +..+|.+|+..+.+
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~ 162 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEV 162 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHh
Confidence 011111122344555677999999993 32222121 112233334567777787777555 67788888776544
No 241
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.88 E-value=1.8e-05 Score=88.90 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. ....++...|..+....+.++|++||+.+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~------------~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDA------------LLRLEVRAELKRLQKELGITTVYVTHDQAE 196 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCH------------HHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCH------------HHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 67788888999999999999876543 233344444444433336789999998754
No 242
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.87 E-value=1.5e-05 Score=85.69 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++.. ....++..+..+... +..||++||+.+.
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~LD~~------------~~~~~~~~l~~l~~~-g~tvi~vtHd~~~ 221 (263)
T 2olj_A 167 RVAIARALAMEPKIMLFDEPTSALDPE------------MVGEVLSVMKQLANE-GMTMVVVTHEMGF 221 (263)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHH------------HHHHHHHHHHHHHHT-TCEEEEECSCHHH
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHH------------HHHHHHHHHHHHHhC-CCEEEEEcCCHHH
Confidence 666888888999999999999765432 222333344333333 6789999997654
No 243
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.87 E-value=9.5e-05 Score=82.31 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=100.4
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CC-c--EEEEecccccccccchhHHHHHHHHHHHh----ccCCeEEEEcCc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GV-N--LFTVNGPEVVSQNYGESEQALHEVFDSAS----QSAPAVVFIDEL 397 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~-~--~i~i~~~~l~~~~~ge~e~~i~~vf~~a~----~~~p~IL~IDEi 397 (957)
....+|||||+|.||++.++.++..+ +. + .+.+++ +..++.+++.+. -....|++|||+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~plf~~~kvvii~~~ 85 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----------NTDWNAIFSLCQAMSLFASRQTLLLLLP 85 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----------TCCHHHHHHHHHHHHHCCSCEEEEEECC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----------CCCHHHHHHHhcCcCCccCCeEEEEECC
Confidence 35578999999999999999998754 32 2 222221 122344444432 334679999999
Q ss_pred cc-cccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC------CCchhhhhCCCCcceeeeecCCCHHHHHH
Q 002169 398 DA-IAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP------DSIEPALRRPGRLDREIEIAVPSPAQRLE 470 (957)
Q Consensus 398 D~-l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~------~~ld~al~r~gRfd~~I~i~~P~~~~r~~ 470 (957)
|. +.. ...+.|+..++.. ..++++|++++.+ ..+.+++.+ |. ..+++..++..+...
T Consensus 86 ~~kl~~-----------~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 86 ENGPNA-----------AINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp SSCCCT-----------THHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHH
T ss_pred CCCCCh-----------HHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHH
Confidence 87 632 1345577777764 3466666666553 357788887 44 358899999999999
Q ss_pred HHHHHHcCCCCCCChHHHHHHHHHcCC
Q 002169 471 ILHALLSGMEHSLLDSEVEYLSMATHG 497 (957)
Q Consensus 471 Il~~~l~~~~~~l~~~~l~~La~~t~g 497 (957)
.++..+...+..+++..++.++..+.|
T Consensus 150 ~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 150 WVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 999999888888899999999987765
No 244
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.87 E-value=1.8e-05 Score=88.76 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. ....++...+..+....+.++|++||+.+.
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~------------~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 196 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDA------------NLRMIMRAEIKHLQQELGITSVYVTHDQAE 196 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCH------------HHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 67788899999999999999865533 223334444444433336789999998654
No 245
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.87 E-value=1.8e-05 Score=88.56 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. ....++...|..+....+.++|++||+.+.
T Consensus 153 RvalArAL~~~P~lLLLDEP~s~LD~------------~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 208 (355)
T 1z47_A 153 RVALARALAPRPQVLLFDEPFAAIDT------------QIRRELRTFVRQVHDEMGVTSVFVTHDQEE 208 (355)
T ss_dssp HHHHHHHHTTCCSEEEEESTTCCSSH------------HHHHHHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCH------------HHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 67788888999999999999865432 233344444444433336789999998654
No 246
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.86 E-value=1.3e-05 Score=85.95 Aligned_cols=28 Identities=32% Similarity=0.482 Sum_probs=24.5
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCC
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGL 706 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~ 706 (957)
+..+++||||||||||++|++||+.+..
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3557999999999999999999997654
No 247
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.86 E-value=1.5e-05 Score=89.08 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||++++|+...
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 36678899999999999999999999998764
No 248
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.85 E-value=1.6e-05 Score=89.53 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. ....++...|..+....+.++|++||+.+.
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~------------~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 204 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDA------------KLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 204 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCH------------HHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 67788888999999999999865533 233344444444433336789999998654
No 249
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.85 E-value=2.9e-05 Score=83.19 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=25.3
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++..+++||||||||||++|+++|+.++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34568999999999999999999998655
No 250
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.84 E-value=8.3e-06 Score=91.42 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|||||||++++|+...
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 46678899999999999999999999998663
No 251
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.84 E-value=1.8e-05 Score=85.04 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=28.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 44 sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 44 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 46778899999999999999999999998764
No 252
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.84 E-value=4.9e-06 Score=86.74 Aligned_cols=56 Identities=14% Similarity=0.071 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.+|++||+.+.++.. ....+-+++..+. .. +..||++||+++.+
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~---------~~~~l~~~l~~~~---~~-g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDED---------SKHKVLKSILEIL---KE-KGIVIISSREELSY 196 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTT---------THHHHHHHHHHHH---HH-HSEEEEEESSCCTT
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHH---------HHHHHHHHHHHHH---hC-CCEEEEEeCCHHHH
Confidence 566777888889999999999766432 2233333334432 12 56788999988764
No 253
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.83 E-value=2.5e-05 Score=83.66 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.||++||+.+.++. .....++..+..+... +..||++||+.+.+
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~------------~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAP------------GLAHDIFNHVLELKAK-GITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCH------------HHHHHHHHHHHHHHHT-TCEEEEECSCCSTT
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCH------------HHHHHHHHHHHHHHHC-CCEEEEEecCHHHH
Confidence 66688888899999999999976543 2223344444433333 67899999988765
No 254
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.82 E-value=1.6e-05 Score=85.29 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++.. ....++..|..+... +.+||++||+++.
T Consensus 154 Rv~lAraL~~~p~lllLDEPts~LD~~------------~~~~l~~~l~~l~~~-g~tiiivtHd~~~ 208 (256)
T 1vpl_A 154 KLLIARALMVNPRLAILDEPTSGLDVL------------NAREVRKILKQASQE-GLTILVSSHNMLE 208 (256)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHH------------HHHHHHHHHHHHHHT-TCEEEEEECCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccccCHH------------HHHHHHHHHHHHHhC-CCEEEEEcCCHHH
Confidence 667888888999999999999765432 222333333333222 6788999997654
No 255
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.82 E-value=4.5e-06 Score=73.30 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Q 002169 466 AQRLEILHALLSGMEHSLLDSEVEYLSMATHGFVGADLAALCNEAALVCLRR 517 (957)
Q Consensus 466 ~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~gaDi~~l~~~A~~~a~rr 517 (957)
++|.+||+.+++++++. .+.+++.+|..|+||+|+||.++|++|++.++++
T Consensus 1 ~~R~~Il~~~l~~~~~~-~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~ 51 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 51 (82)
T ss_dssp -------------CEEC-TTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 46899999999988764 5677899999999999999999999999999876
No 256
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.81 E-value=7.8e-05 Score=83.49 Aligned_cols=114 Identities=21% Similarity=0.301 Sum_probs=72.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc----------------ccchhHHHHHHHHHHHh
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ----------------NYGESEQALHEVFDSAS 385 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~----------------~~ge~e~~i~~vf~~a~ 385 (957)
|+.++.-++|+||||+|||||+..++..+ +..++++++...... .....+..+..+-....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 67889999999999999999999998764 556777776543221 01122222322222333
Q ss_pred ccCCeEEEEcCccccccC-C--cCCCch---HHHHHHHHHHHHhhccccCCCeEEEEec
Q 002169 386 QSAPAVVFIDELDAIAPA-R--KDGGEE---LSQRMVATLLNLMDGVCRTDGVLVIAAT 438 (957)
Q Consensus 386 ~~~p~IL~IDEiD~l~~~-~--~~~~~~---~~~~i~~~Ll~~ld~l~~~~~v~vI~tt 438 (957)
...+.+++||.+..+.+. . ...++. ...+.+.+++..|..+....++.||++.
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467899999999888751 1 111111 2345566777777777666677777764
No 257
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.80 E-value=1.7e-05 Score=88.66 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=38.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. .....+...|..+....+.++|++||+.+.
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~------------~~~~~l~~~l~~l~~~~g~tii~vTHd~~~ 190 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDP------------RTQENAREMLSVLHKKNKLTVLHITHDQTE 190 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCH------------HHHHHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCH------------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 66788888899999999999865433 233344444444433346789999998654
No 258
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.80 E-value=1.1e-05 Score=90.52 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++.. ... ++...|..+....+.++|++||+.+.
T Consensus 148 RvalAraL~~~P~lLLLDEP~s~LD~~---------~r~---~l~~~l~~l~~~~g~tvi~vTHd~~~ 203 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEPFSNLDAR---------MRD---SARALVKEVQSRLGVTLLVVSHDPAD 203 (353)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGG---------GHH---HHHHHHHHHHHHHCCEEEEEESCHHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHH---------HHH---HHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 677888889999999999998766432 222 23333333322336789999998654
No 259
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.79 E-value=2.5e-05 Score=83.62 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=28.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36778899999999999999999999998764
No 260
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.78 E-value=5.6e-06 Score=91.00 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=28.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+++++.+.|+||+|+|||||++++++.+.
T Consensus 74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred eEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 46788999999999999999999999998764
No 261
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.78 E-value=3.2e-05 Score=83.56 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
|..+++|....|.||++||+.+.++. .....++..|..+....+.+||++||+++
T Consensus 164 Rv~lAraL~~~p~lllLDEPts~LD~------------~~~~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNATSALDA------------GNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCH------------HHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCH------------HHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 66788888899999999999976533 23334455555443333678899999764
No 262
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.77 E-value=2.3e-05 Score=88.41 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. ....++...|..+....+.++|++||+.+.
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~------------~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDA------------KLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCH------------HHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCH------------HHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 66788888999999999999866533 223334444444333336789999998654
No 263
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.77 E-value=1.1e-05 Score=85.75 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++. .....++..+..+....+..||++||+.+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~------------~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~ 189 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDL------------KTKGVLMEELRFVQREFDVPILHVTHDLIE 189 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCH------------HHHHHHHHHHHHHHHHHTCCEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCH------------HHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 66788888899999999999866533 222233333333322225678899997654
No 264
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.76 E-value=4.8e-05 Score=85.23 Aligned_cols=117 Identities=23% Similarity=0.337 Sum_probs=66.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc----cc------------hhHHHHHHHHHHH
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN----YG------------ESEQALHEVFDSA 384 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~----~g------------e~e~~i~~vf~~a 384 (957)
-|++++.-++|+||||+||||||..++... +..++.++...-.... .| ..+..+..+...+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 367889999999999999999999888653 5566666654322110 01 1222222222233
Q ss_pred hccCCeEEEEcCccccccCCc---CCCch---HHHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 385 SQSAPAVVFIDELDAIAPARK---DGGEE---LSQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 385 ~~~~p~IL~IDEiD~l~~~~~---~~~~~---~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
....|.+|+||++..+.+... ..++. ...+...+++..+..+....++.||++++.
T Consensus 136 ~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~ 197 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINEL 197 (349)
T ss_dssp TTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 355699999999998874211 00111 122233333333333323446677777654
No 265
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.75 E-value=2.1e-05 Score=83.81 Aligned_cols=54 Identities=28% Similarity=0.404 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++.. ....+-+++..+ . . +.+||++||+++.
T Consensus 153 Rv~iAraL~~~p~lllLDEPts~LD~~---------~~~~i~~~l~~~---~-~-g~tviivtH~~~~ 206 (247)
T 2ff7_A 153 RIAIARALVNNPKILIFDEATSALDYE---------SEHVIMRNMHKI---C-K-GRTVIIIAHRLST 206 (247)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSCCCHH---------HHHHHHHHHHHH---H-T-TSEEEEECSSGGG
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHH---------HHHHHHHHHHHH---c-C-CCEEEEEeCCHHH
Confidence 566777888899999999999665432 222233333333 2 2 5688999998754
No 266
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.75 E-value=9.6e-06 Score=87.69 Aligned_cols=32 Identities=34% Similarity=0.482 Sum_probs=28.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||+++|++.+.
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46788999999999999999999999997763
No 267
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.75 E-value=5.4e-05 Score=84.84 Aligned_cols=120 Identities=14% Similarity=0.203 Sum_probs=69.7
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHhC---------CcEEEEeCCCcccc---------------------cccc--
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEAG---------LNFLAVKGPELFSK---------------------WVGE-- 723 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~~---------~~~i~v~~~~l~~~---------------------~vg~-- 723 (957)
++++..-+.|+||||+|||||++.++.... ...+.++..+.+.. ++..
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecC
Confidence 455566699999999999999999998762 34577776543210 0000
Q ss_pred hHHHHHHHHH----HHHh-----CCCeEEEEeCCchhhhhcCCCCCCCcchH--HHHHHHHHHHhccccCCcEEEEEecC
Q 002169 724 SEKAVRSLFA----KARA-----NAPSIIFFDEIDGLAAIRGKESDGVSVSD--RVMSQLLVELDGLHQRVNVTVIAATN 792 (957)
Q Consensus 724 ~~~~ir~~f~----~A~~-----~~p~ILfiDEid~l~~~r~~~~~~~~~~~--~v~~~LL~~ld~~~~~~~v~VI~aTN 792 (957)
.......+++ .+.. ..|.+|+|||+.++.+...... ..... ..+.+++..|..+....++.||+++|
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~--~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h 284 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR--GALAERQQKLAKHLADLHRLANLYDIAVFVTNQ 284 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST--TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc--ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence 0111122222 2333 5799999999999875431110 01111 23455555565554455788888888
Q ss_pred CCCCC
Q 002169 793 RPDKI 797 (957)
Q Consensus 793 ~~~~i 797 (957)
.....
T Consensus 285 ~~~~~ 289 (349)
T 1pzn_A 285 VQARP 289 (349)
T ss_dssp CC---
T ss_pred ccccc
Confidence 66543
No 268
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.74 E-value=1.8e-05 Score=84.01 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=27.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+ +.+.|.||+|+|||||++++++.+.
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366788 8999999999999999999998764
No 269
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.72 E-value=6.1e-05 Score=85.76 Aligned_cols=116 Identities=19% Similarity=0.228 Sum_probs=70.0
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEecccccccc--------cc----------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVVSQN--------YG---------------- 371 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---------~~~~i~i~~~~l~~~~--------~g---------------- 371 (957)
|+.++..++|+||||||||||++.++... +...+++++.+..... +|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 78899999999999999999999766322 2346777765421100 00
Q ss_pred ---hhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchH--HHHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 372 ---ESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEEL--SQRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 372 ---e~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~--~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
.....+..+.+.+....|.+|+||++-.+......+.... .++.+..++..|..+....++.||++++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0111222233334446789999999887765432211112 23444667777777665667888888864
No 270
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.72 E-value=8.7e-05 Score=83.10 Aligned_cols=118 Identities=22% Similarity=0.258 Sum_probs=73.5
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc----------------ccchHHHHHHHHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW----------------VGESEKAVRSLFAKAR 736 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~----------------vg~~~~~ir~~f~~A~ 736 (957)
|+.+..-++|+||||+|||||+..+|..+ +...+.++..+..... ....+..+..+-..++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 35555569999999999999999998764 5566777765533210 0112222222222334
Q ss_pred hCCCeEEEEeCCchhhh-hc--CCCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 737 ANAPSIIFFDEIDGLAA-IR--GKESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~-~r--~~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
...|.+++||.+..+.+ .. +..++. .....+.+.+++..|..+....++.||++.+-
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv 197 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQI 197 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEES
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeee
Confidence 57789999999998865 11 111111 11335777788888877766667777776543
No 271
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.71 E-value=2.3e-05 Score=83.53 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCe-------EEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPS-------IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~-------ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|. +|++||+.+.++. .....++..|..+... +..||++||+.+.
T Consensus 134 rv~lAraL~~~p~~~~~~~~lllLDEPts~LD~------------~~~~~l~~~l~~l~~~-g~tviivtHd~~~ 195 (249)
T 2qi9_C 134 RVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV------------AQQSALDKILSALSQQ-GLAIVMSSHDLNH 195 (249)
T ss_dssp HHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCH------------HHHHHHHHHHHHHHHT-TCEEEEECSCHHH
T ss_pred HHHHHHHHHcCCCcCCCCCeEEEEECCcccCCH------------HHHHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 6667778888899 9999999976543 2222344444433223 6688999998654
No 272
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.70 E-value=7.8e-05 Score=83.50 Aligned_cols=119 Identities=15% Similarity=0.165 Sum_probs=68.9
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEecccccc-c-------c-------------cc--
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVVS-Q-------N-------------YG-- 371 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l---------~~~~i~i~~~~l~~-~-------~-------------~g-- 371 (957)
.+++++.-+.|+||||+|||||++.++... +-..+++++.+... . . +.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEec
Confidence 578899999999999999999999999876 23557777654210 0 0 00
Q ss_pred ----hhHHHHHHHHHHHhc-----cCCeEEEEcCccccccCCcCCCchHHH--HHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 372 ----ESEQALHEVFDSASQ-----SAPAVVFIDELDAIAPARKDGGEELSQ--RMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 372 ----e~e~~i~~vf~~a~~-----~~p~IL~IDEiD~l~~~~~~~~~~~~~--~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
...+.+..+-..+.. ..|.+|+|||+-++......+...... ..+..++..|..+....++.||++++.
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 001112111112222 579999999987665321111111121 234455555555544557788888765
Q ss_pred CC
Q 002169 441 PD 442 (957)
Q Consensus 441 ~~ 442 (957)
..
T Consensus 286 ~~ 287 (349)
T 1pzn_A 286 QA 287 (349)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 273
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.70 E-value=1.3e-05 Score=85.45 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36678899999999999999999999998763
No 274
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.70 E-value=1.9e-05 Score=85.66 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEE--EEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTV--IAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~V--I~aTN~~~~i 797 (957)
|..+++|....|.+|++||+.+.++.. ..+.+-.++..+. .. +..| |++||+.+.+
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~---------~~~~l~~~l~~l~---~~-g~tv~~iivtHd~~~~ 226 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFI---------ARESLLSILDSLS---DS-YPTLAMIYVTHFIEEI 226 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHH---------HHHHHHHHHHHHH---HH-CTTCEEEEEESCGGGC
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHH---------HHHHHHHHHHHHH---HC-CCEEEEEEEecCHHHH
Confidence 666788888999999999999765432 2222333333332 22 3456 8899987654
No 275
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.70 E-value=4.6e-05 Score=85.36 Aligned_cols=120 Identities=23% Similarity=0.273 Sum_probs=69.0
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc----cc------------chHHHHHHHHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW----VG------------ESEKAVRSLFAKAR 736 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~----vg------------~~~~~ir~~f~~A~ 736 (957)
|+++..-++|+||||+|||++|..++... +...+.++...-.... .| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45556669999999999999999998654 5566666654432211 11 11222222222344
Q ss_pred hCCCeEEEEeCCchhhhhcC---CCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 737 ANAPSIIFFDEIDGLAAIRG---KESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~~r~---~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
...|.+|+||++..+..... ..++. .....+.+.+++..|.......++.||+++|...
T Consensus 137 ~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~ 199 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELRE 199 (349)
T ss_dssp TTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-
T ss_pred cCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEecccc
Confidence 56799999999999873211 10010 0122345566666665444445777888776544
No 276
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.70 E-value=4.8e-05 Score=81.30 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36678899999999999999999999998763
No 277
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.69 E-value=5.3e-05 Score=81.39 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=49.9
Q ss_pred HhcCCCCCCcceeeCCCCChhhHHHHHHHHHhC---CcEEEEeCCCc---ccc--------cccchHHHHHHHHHHHHhC
Q 002169 673 KRIGTRPPTGILMFGPPGCSKTLMARAVASEAG---LNFLAVKGPEL---FSK--------WVGESEKAVRSLFAKARAN 738 (957)
Q Consensus 673 ~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~~---~~~i~v~~~~l---~~~--------~vg~~~~~ir~~f~~A~~~ 738 (957)
+++.+.+..-++|.||+|+||||+++++++... ..-+.+.+..+ ... .+|.....++..++.+...
T Consensus 18 ~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 18 LELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALRE 97 (261)
T ss_dssp HHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHH
T ss_pred HHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhh
Confidence 333444455589999999999999999998652 22233332211 100 1111223457788888888
Q ss_pred CCeEEEEeCCc
Q 002169 739 APSIIFFDEID 749 (957)
Q Consensus 739 ~p~ILfiDEid 749 (957)
.|.+|++||+.
T Consensus 98 ~p~illlDEp~ 108 (261)
T 2eyu_A 98 DPDVIFVGEMR 108 (261)
T ss_dssp CCSEEEESCCC
T ss_pred CCCEEEeCCCC
Confidence 99999999995
No 278
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.69 E-value=8.2e-05 Score=79.68 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=28.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CCEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35678899999999999999999999997663
No 279
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.68 E-value=7.1e-05 Score=83.98 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=62.6
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCC-Cccc---------ccccchHHHHHHHHHHHHhCCCeEEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGP-ELFS---------KWVGESEKAVRSLFAKARANAPSIIFF 745 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~-~l~~---------~~vg~~~~~ir~~f~~A~~~~p~ILfi 745 (957)
..-+++.||+|+||||+++++++.. +..++.+..+ ++.. ..++.........++.|....|.+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 3358999999999999999998875 3444444332 1111 011222234566888999999999999
Q ss_pred eCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 746 DEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 746 DEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
||+.. ......++.... .+..||+++|..+.+
T Consensus 203 DEp~d---------------~e~~~~~~~~~~-----~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 203 GEMRD---------------LETIRLALTAAE-----TGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCCS---------------HHHHHHHHHHHH-----TTCEEEEEESCSSHH
T ss_pred CCCCC---------------HHHHHHHHHHHh-----cCCEEEEEEccChHH
Confidence 99962 222333333322 255689999987654
No 280
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.68 E-value=3.6e-05 Score=82.69 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=28.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36678899999999999999999999998764
No 281
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.68 E-value=8.4e-05 Score=80.01 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.||++||+.+.++. .....++..+..+... +.+||++||+++.+
T Consensus 146 Rv~lAraL~~~p~lllLDEPts~LD~------------~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 146 RVAIASVIVHEPDILILDEPLVGLDR------------EGKTDLLRIVEKWKTL-GKTVILISHDIETV 201 (266)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCH------------HHHHHHHHHHHHHHHT-TCEEEEECSCCTTT
T ss_pred HHHHHHHHHcCCCEEEEcCccccCCH------------HHHHHHHHHHHHHHHc-CCEEEEEeCCHHHH
Confidence 56677888889999999999976543 2223344444433333 67899999988764
No 282
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.68 E-value=2.8e-05 Score=82.49 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. .....++..+..+.. .+.+||++||+++.
T Consensus 147 rv~lAraL~~~p~lllLDEPts~LD~------------~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~ 201 (240)
T 1ji0_A 147 MLAIGRALMSRPKLLMMDEPSLGLAP------------ILVSEVFEVIQKINQ-EGTTILLVEQNALG 201 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCH------------HHHHHHHHHHHHHHH-TTCCEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCH------------HHHHHHHHHHHHHHH-CCCEEEEEecCHHH
Confidence 55677788889999999999976543 222233334433322 35678899997644
No 283
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.67 E-value=3e-05 Score=85.10 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=23.9
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHh
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
+++..-+.|+||+|+|||||+++|++..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4455569999999999999999999765
No 284
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.67 E-value=7.7e-05 Score=82.63 Aligned_cols=115 Identities=16% Similarity=0.266 Sum_probs=69.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEecccccc-c-------ccc----------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVVS-Q-------NYG---------------- 371 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---------~~~~i~i~~~~l~~-~-------~~g---------------- 371 (957)
|++++.-++|+||||+|||++|..+|... +...++++...-.. . ..|
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 68889999999999999999999999764 45677777654210 0 000
Q ss_pred hhH---HHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchHH--HHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 372 ESE---QALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEELS--QRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 372 e~e---~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~~--~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
..+ ..+..+...+.. ..+.+|+||.+..+......+.++.. ...+.+++..|..+....++.||++.+
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 011 122233333444 56899999999888643211111111 224455555555554555777777654
No 285
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.66 E-value=0.00017 Score=81.08 Aligned_cols=114 Identities=21% Similarity=0.316 Sum_probs=69.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc----------------cchhHHHHHHHHH-HH
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN----------------YGESEQALHEVFD-SA 384 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~----------------~ge~e~~i~~vf~-~a 384 (957)
|++++..++|+||||+|||+||..+|... +..++.++...-.... ....+. +...++ .+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~-~l~~l~~l~ 148 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQ-ALEIMELLV 148 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHH-HHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHH-HHHHHHHHH
Confidence 67888999999999999999999888653 5667777754322111 011222 222333 23
Q ss_pred hccCCeEEEEcCccccccCCcCCC--ch----HHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 385 SQSAPAVVFIDELDAIAPARKDGG--EE----LSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 385 ~~~~p~IL~IDEiD~l~~~~~~~~--~~----~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
....+++|+||.+..+.+.....+ ++ ...+.+.+++..|..+....++.||++..
T Consensus 149 ~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 345689999999999875322111 01 22244455555555555566777777653
No 286
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.66 E-value=2.6e-05 Score=82.81 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++.... .. ++..+..+. . +.+||++||+++.
T Consensus 147 rv~lAral~~~p~lllLDEPts~LD~~~~--------~~----i~~~l~~~~-~-~~tvi~vtH~~~~ 200 (243)
T 1mv5_A 147 RLAIARAFLRNPKILMLDEATASLDSESE--------SM----VQKALDSLM-K-GRTTLVIAHRLST 200 (243)
T ss_dssp HHHHHHHHHHCCSEEEEECCSCSSCSSSC--------CH----HHHHHHHHH-T-TSEEEEECCSHHH
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHH--------HH----HHHHHHHhc-C-CCEEEEEeCChHH
Confidence 56677888888999999999977654322 22 222333222 2 5688999997653
No 287
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.66 E-value=0.0001 Score=82.36 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=69.5
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---------CCcEEEEeccccccc--------cc-----------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---------GVNLFTVNGPEVVSQ--------NY----------------- 370 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---------~~~~i~i~~~~l~~~--------~~----------------- 370 (957)
|++++.-++|+||||+|||++|..+|... +...++++....... ..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 68889999999999999999999999762 456777776542110 00
Q ss_pred -c-hhHHHHHHHHHHHhc--cCCeEEEEcCccccccCCcCCCchHH--HHHHHHHHHHhhccccCCCeEEEEecCC
Q 002169 371 -G-ESEQALHEVFDSASQ--SAPAVVFIDELDAIAPARKDGGEELS--QRMVATLLNLMDGVCRTDGVLVIAATNR 440 (957)
Q Consensus 371 -g-e~e~~i~~vf~~a~~--~~p~IL~IDEiD~l~~~~~~~~~~~~--~~i~~~Ll~~ld~l~~~~~v~vI~ttN~ 440 (957)
. +....+..+...+.. ..+.+|+||.+..+......+.++.. ...+.+++..|..+....++.||++...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 0 111112222233334 56889999999988743211111122 2234555555555555567777776643
No 288
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.65 E-value=5.5e-05 Score=86.15 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=69.7
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---------CCcEEEEeCCCcccc--------cccc---------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSK--------WVGE--------------- 723 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---------~~~~i~v~~~~l~~~--------~vg~--------------- 723 (957)
|+.+..-++|+||||+|||||++.++-.. +...+.++..+.+.. .+|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56666679999999999999999776332 234677776553211 0010
Q ss_pred -h---HHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 724 -S---EKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 724 -~---~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
. ...+..+.+.+....|.+|+|||+..+.+......++.....+.+.+++..|..+....++.||+++|...
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~ 329 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVA 329 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecc
Confidence 0 11122333444457899999999998765321111110111234466666676665566888999988643
No 289
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.64 E-value=6.2e-05 Score=80.87 Aligned_cols=55 Identities=22% Similarity=0.314 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. .....++..+..+... +.+||++||+.+.
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~------------~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~ 215 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDP------------ELVGEVLRIMQQLAEE-GKTMVVVTHEMGF 215 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCH------------HHHHHHHHHHHHHHHT-TCCEEEECSCHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCH------------HHHHHHHHHHHHHHhC-CCEEEEEeCCHHH
Confidence 55677788889999999999976543 2222333333333233 6678999997654
No 290
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.64 E-value=4.9e-05 Score=80.59 Aligned_cols=31 Identities=29% Similarity=0.230 Sum_probs=27.8
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3667889999999999999999999999765
No 291
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.64 E-value=0.0001 Score=78.68 Aligned_cols=56 Identities=29% Similarity=0.322 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++. .....++..+..+....+..||++||+.+.
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~------------~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 191 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDL------------ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCH------------HHHHHHHHHHHHHHHTSCCEEEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCH------------HHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 66788888899999999999976543 222233344443333335688999997654
No 292
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.63 E-value=3.8e-05 Score=82.45 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+-++.. ....+.+++..+ .. +.+||++||+++.
T Consensus 163 Rv~lAraL~~~p~lllLDEPts~LD~~---------~~~~i~~~l~~l---~~--~~tviivtH~~~~ 216 (260)
T 2ghi_A 163 RIAIARCLLKDPKIVIFDEATSSLDSK---------TEYLFQKAVEDL---RK--NRTLIIIAHRLST 216 (260)
T ss_dssp HHHHHHHHHHCCSEEEEECCCCTTCHH---------HHHHHHHHHHHH---TT--TSEEEEECSSGGG
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHH---------HHHHHHHHHHHh---cC--CCEEEEEcCCHHH
Confidence 556777777889999999999765432 223333334433 22 4688999998764
No 293
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.62 E-value=1.1e-05 Score=86.09 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 36678899999999999999999999998764
No 294
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.62 E-value=6.3e-05 Score=80.21 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++.. ....++..+..+.. .+..||++||+++.
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~------------~~~~l~~~l~~l~~-~g~tvi~vtHd~~~ 205 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDID------------ALKVVARGVNAMRG-PNFGALVITHYQRI 205 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHH------------HHHHHHHHHHHHCS-TTCEEEEECSSSGG
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHH------------HHHHHHHHHHHHHh-cCCEEEEEecCHHH
Confidence 445667777789999999999765432 22334444444332 36789999998764
No 295
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.59 E-value=5.4e-05 Score=82.10 Aligned_cols=32 Identities=25% Similarity=0.271 Sum_probs=28.4
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 41 SWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 36678899999999999999999999998763
No 296
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.57 E-value=4.7e-05 Score=79.28 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=28.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36678899999999999999999999998764
No 297
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.57 E-value=1.5e-05 Score=90.41 Aligned_cols=31 Identities=29% Similarity=0.387 Sum_probs=28.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|||||||+++|++..
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4678899999999999999999999999764
No 298
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.56 E-value=0.00016 Score=81.41 Aligned_cols=118 Identities=19% Similarity=0.292 Sum_probs=71.2
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc----cc-----------chHHHHHHHHHH-HH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW----VG-----------ESEKAVRSLFAK-AR 736 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~----vg-----------~~~~~ir~~f~~-A~ 736 (957)
|+++..-++|+||||+|||++|..+|... +.+.+.++...-...+ .| .....+...++. ++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45566669999999999999999988654 5667777665432221 01 111222333333 33
Q ss_pred hCCCeEEEEeCCchhhhhcCCCC---CC-CcchHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 737 ANAPSIIFFDEIDGLAAIRGKES---DG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~~r~~~~---~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
...+.+|+||.+..+.......+ +. .....+.+.+++..|..+....++.||++.+-
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~ 210 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQV 210 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 46788999999998864211110 00 01233567777777776656667777776543
No 299
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.54 E-value=0.00018 Score=77.49 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=28.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 46778899999999999999999999997653
No 300
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.54 E-value=0.00015 Score=76.70 Aligned_cols=56 Identities=21% Similarity=0.212 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHh---ccccCCcEEEEEecCCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELD---GLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld---~~~~~~~v~VI~aTN~~~~i 797 (957)
-|..+++|....|.||++||+.+.++. .....++..+. ... .+.+||++||+.+.+
T Consensus 134 qRv~lAraL~~~p~lllLDEPts~LD~------------~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~~ 192 (237)
T 2cbz_A 134 QRVSLARAVYSNADIYLFDDPLSAVDA------------HVGKHIFENVIGPKGML--KNKTRILVTHSMSYL 192 (237)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTSCH------------HHHHHHHHHTTSTTSTT--TTSEEEEECSCSTTG
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccCH------------HHHHHHHHHHHHHHhhc--CCCEEEEEecChHHH
Confidence 366788888889999999999866533 23334555552 222 267899999987653
No 301
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.54 E-value=9.1e-05 Score=79.81 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=38.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+.++ ......++..+..+... +.+||++||+++.
T Consensus 172 Rv~iAraL~~~p~lLlLDEPts~LD------------~~~~~~l~~~l~~l~~~-g~tviivtHd~~~ 226 (267)
T 2zu0_C 172 RNDILQMAVLEPELCILDESDSGLD------------IDALKVVADGVNSLRDG-KRSFIIVTHYQRI 226 (267)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCC------------HHHHHHHHHHHHTTCCS-SCEEEEECSSGGG
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCC------------HHHHHHHHHHHHHHHhc-CCEEEEEeeCHHH
Confidence 5566777778899999999996643 33334555556655433 6789999998765
No 302
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.54 E-value=5.9e-05 Score=85.56 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 727 AVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 727 ~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
+-|..+++|....|.||++||+.+-++. ....++...|.... .+.++|++||+.+.
T Consensus 161 rQRvalARAL~~~P~lLLLDEPts~LD~------------~~~~~l~~~l~~~~--~~~tvi~vtHd~e~ 216 (390)
T 3gd7_A 161 KQLMCLARSVLSKAKILLLDEPSAHLDP------------VTYQIIRRTLKQAF--ADCTVILCEARIEA 216 (390)
T ss_dssp HHHHHHHHHHHTTCCEEEEESHHHHSCH------------HHHHHHHHHHHTTT--TTSCEEEECSSSGG
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCH------------HHHHHHHHHHHHHh--CCCEEEEEEcCHHH
Confidence 3467888899999999999999876543 23334555555432 25678999998653
No 303
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.54 E-value=0.00016 Score=81.04 Aligned_cols=115 Identities=23% Similarity=0.388 Sum_probs=66.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccccc----cc-----------hhHHHHHHHHHH-Hh
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQN----YG-----------ESEQALHEVFDS-AS 385 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~~----~g-----------e~e~~i~~vf~~-a~ 385 (957)
|++++..++|+||||+|||+||..+|... +..++.++...-.... .| .....+..+++. +.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 57888999999999999999999888653 5677777764321110 00 111223333332 23
Q ss_pred ccCCeEEEEcCccccccCCc-C--CCch---HHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 386 QSAPAVVFIDELDAIAPARK-D--GGEE---LSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 386 ~~~p~IL~IDEiD~l~~~~~-~--~~~~---~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
...+.+|+||.+..+.+... . .++. ...+.+.+++..|..+....++.||++..
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq 198 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 45688999999998875221 0 0110 12233344444444443445677776653
No 304
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.54 E-value=0.00021 Score=76.93 Aligned_cols=30 Identities=33% Similarity=0.534 Sum_probs=27.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHH
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~ 352 (957)
++.+.+++.+.|.||+|+|||||++++++.
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999986
No 305
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.53 E-value=0.00011 Score=81.24 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=71.1
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---------CCcEEEEeCCCcccc-----c---cc----------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSK-----W---VG---------------- 722 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---------~~~~i~v~~~~l~~~-----~---vg---------------- 722 (957)
|+++..-++|+||||+|||++|..+|... +.+.+.++...-+.. + .|
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 45666669999999999999999998764 456677776543110 0 00
Q ss_pred chH---HHHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcchH--HHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 723 ESE---KAVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVSD--RVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 723 ~~~---~~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~~--~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
..+ ..+..+.+.++. ..+.+|+||++..+........ ....+ ..+.+++..|..+....++.||++.+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~--g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR--ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT--TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc--ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 011 112233344444 6789999999999875321110 11222 3466677777766555577787775533
No 306
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.51 E-value=0.00025 Score=76.15 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=27.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+. +..+.|.||+|+|||||++++++.+
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 46678 8999999999999999999999876
No 307
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.49 E-value=3.2e-05 Score=83.04 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=28.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 46788999999999999999999999998653
No 308
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.48 E-value=0.00021 Score=79.81 Aligned_cols=118 Identities=18% Similarity=0.219 Sum_probs=70.0
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---------CCcEEEEeCCCcccc-----c---ccc---------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---------GLNFLAVKGPELFSK-----W---VGE--------------- 723 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---------~~~~i~v~~~~l~~~-----~---vg~--------------- 723 (957)
|+++..-++|+||||+|||++|..+|... +...+.++....+.. + .|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45555568999999999999999998862 456667766543210 0 000
Q ss_pred -hH---HHHHHHHHHHHh--CCCeEEEEeCCchhhhhcCCCCCCCcchH--HHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 724 -SE---KAVRSLFAKARA--NAPSIIFFDEIDGLAAIRGKESDGVSVSD--RVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 724 -~~---~~ir~~f~~A~~--~~p~ILfiDEid~l~~~r~~~~~~~~~~~--~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.+ ..+..+...+.. ..+.+|+||.+..+....-.. ...... ..+.+++..|..+....++.||++++...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~--~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG--RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG--GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 11 111222334444 678999999999987542110 011222 24666777676665566778887766443
No 309
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.48 E-value=0.00017 Score=80.87 Aligned_cols=119 Identities=20% Similarity=0.303 Sum_probs=70.0
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccccc----cc-----------chHHHHHHHHHH-HH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFSKW----VG-----------ESEKAVRSLFAK-AR 736 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~~~----vg-----------~~~~~ir~~f~~-A~ 736 (957)
|+++..-++|+||||+|||++|..+|... +.+.+.++...-.... .| .....+..+++. ++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45666679999999999999999998654 5667777764332210 00 112233334432 34
Q ss_pred hCCCeEEEEeCCchhhhhcC---CCCCC-CcchHHHHHHHHHHHhccccCCcEEEEEecCCC
Q 002169 737 ANAPSIIFFDEIDGLAAIRG---KESDG-VSVSDRVMSQLLVELDGLHQRVNVTVIAATNRP 794 (957)
Q Consensus 737 ~~~p~ILfiDEid~l~~~r~---~~~~~-~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~ 794 (957)
...+.+|+||.+..+..... ..++. .....+.+.+++..|..+....++.||++.+..
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 56788999999998864221 00000 002234556667766655555577788765543
No 310
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.45 E-value=0.00017 Score=80.95 Aligned_cols=100 Identities=22% Similarity=0.373 Sum_probs=60.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcC----CcEEEEecc-ccc--------cc-ccchhHHHHHHHHHHHhccCCeEE
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSG----VNLFTVNGP-EVV--------SQ-NYGESEQALHEVFDSASQSAPAVV 392 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~----~~~i~i~~~-~l~--------~~-~~ge~e~~i~~vf~~a~~~~p~IL 392 (957)
.++..+++.||+|+||||+++++++.+. ..++.+.-+ ++. .+ ..+.........+..+....|.+|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 3455789999999999999999998762 334333211 111 10 111111234557778888999999
Q ss_pred EEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCCCc
Q 002169 393 FIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPDSI 444 (957)
Q Consensus 393 ~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~~l 444 (957)
++||+-. ......++... ..+..+|++++..+.+
T Consensus 201 llDEp~d-------------~e~~~~~~~~~-----~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 201 LVGEMRD-------------LETIRLALTAA-----ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EESCCCS-------------HHHHHHHHHHH-----HTTCEEEEEESCSSHH
T ss_pred ecCCCCC-------------HHHHHHHHHHH-----hcCCEEEEEEccChHH
Confidence 9999731 11222233332 2355788899887655
No 311
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.45 E-value=0.00011 Score=81.64 Aligned_cols=97 Identities=9% Similarity=0.100 Sum_probs=65.6
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhC--CcEEEEeCCCccc-----c---cccchHHHHHHHHHHHHhCCCeEEEEeCC
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAG--LNFLAVKGPELFS-----K---WVGESEKAVRSLFAKARANAPSIIFFDEI 748 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~--~~~i~v~~~~l~~-----~---~vg~~~~~ir~~f~~A~~~~p~ILfiDEi 748 (957)
+...+++.||+|+||||++++|++... ...+.+.+...+. . ++.......+..++.|....|.+|++||+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~ 249 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 249 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCC
Confidence 355699999999999999999999864 3566776543211 1 12112445678889999999999999999
Q ss_pred chhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 749 DGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 749 d~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.+- ++. +++..+. .++..+|++||..+
T Consensus 250 ~~~---------------e~~-~~l~~~~----~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 250 RSS---------------EAY-DFYNVLC----SGHKGTLTTLHAGS 276 (330)
T ss_dssp CST---------------HHH-HHHHHHH----TTCCCEEEEEECSS
T ss_pred ChH---------------HHH-HHHHHHh----cCCCEEEEEEcccH
Confidence 741 122 2344443 22345788888765
No 312
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.43 E-value=0.00026 Score=74.76 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=28.0
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678899999999999999999999999765
No 313
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.42 E-value=0.00038 Score=75.74 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=31.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEe
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVN 361 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~ 361 (957)
+++.++.-++|.||||+|||||++.+|..+ |..++.++
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 688999999999999999999999999765 43454444
No 314
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.42 E-value=0.00034 Score=76.53 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=67.4
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc-----CCcEEEEecccccccc----c------------chhHHHHHHHHH
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS-----GVNLFTVNGPEVVSQN----Y------------GESEQALHEVFD 382 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l-----~~~~i~i~~~~l~~~~----~------------ge~e~~i~~vf~ 382 (957)
-|+.++ -++|+||||+|||+|+-.++... +..++++++.+-.... . ...++..-.+.+
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 467777 68999999999999987665433 5677788865422210 0 112222022222
Q ss_pred H---HhccCCeEEEEcCccccccCCcCCC---c-----hHHHHHHHHHHHHhhccccCCCeEEEEecC
Q 002169 383 S---ASQSAPAVVFIDELDAIAPARKDGG---E-----ELSQRMVATLLNLMDGVCRTDGVLVIAATN 439 (957)
Q Consensus 383 ~---a~~~~p~IL~IDEiD~l~~~~~~~~---~-----~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN 439 (957)
. +....|.+|+||-+..+.+...-.+ + ....|..++.+..|..+....++.+|++-.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQ 170 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH 170 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 2 3456799999999999985322111 1 023355555555555555566777777653
No 315
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.42 E-value=0.00019 Score=77.54 Aligned_cols=112 Identities=12% Similarity=0.186 Sum_probs=61.9
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh--C-----------CcEEEEeCCCccccc------ccc-------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA--G-----------LNFLAVKGPELFSKW------VGE------------- 723 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~--~-----------~~~i~v~~~~l~~~~------vg~------------- 723 (957)
++.+..-++|+||||+|||||++.++... + .+.+.+...+..... .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~ 105 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG 105 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence 34455569999999999999999998643 2 244455543321100 000
Q ss_pred --------------hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEE
Q 002169 724 --------------SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789 (957)
Q Consensus 724 --------------~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~ 789 (957)
+...+..+. +....|.+|+|||+..+.... ......+.+++..|..+....++.||+
T Consensus 106 l~l~~~~~~~~~~ls~g~~~~i~--~l~~~~~livlDe~~~~~~~d-------~~~~~~~~~~~~~L~~l~~~~g~tvi~ 176 (279)
T 1nlf_A 106 LLIQPLIGSLPNIMAPEWFDGLK--RAAEGRRLMVLDTLRRFHIEE-------ENASGPMAQVIGRMEAIAADTGCSIVF 176 (279)
T ss_dssp EEECCCTTSCCCTTSHHHHHHHH--HHHTTCSEEEEECGGGGCCSC-------TTCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred eEEeecCCCCcccCCHHHHHHHH--HhcCCCCEEEECCHHHhcCCC-------cCchHHHHHHHHHHHHHHHHcCCEEEE
Confidence 011122222 223468999999999864321 112233344555555443344778999
Q ss_pred ecCCCCC
Q 002169 790 ATNRPDK 796 (957)
Q Consensus 790 aTN~~~~ 796 (957)
++|....
T Consensus 177 i~H~~~~ 183 (279)
T 1nlf_A 177 LHHASKG 183 (279)
T ss_dssp EEEC---
T ss_pred EecCCCc
Confidence 9886654
No 316
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.41 E-value=0.00015 Score=87.01 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.|..+++|....|.||++||+.+-.+.. ....+.+.+..+. .+.++|++||+.+.
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~---------~~~~i~~~l~~~~-----~~~t~i~itH~l~~ 552 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTK---------TEKSIQAAMWKLM-----EGKTSIIIAHRLNT 552 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHH---------HHHHHHHHHHHHH-----TTSEEEEESCCTTH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHH---------HHHHHHHHHHHHc-----CCCEEEEEecCHHH
Confidence 4677888888999999999999765432 2222233333332 25688999998875
No 317
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.39 E-value=0.00036 Score=74.95 Aligned_cols=52 Identities=17% Similarity=0.003 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+-++. .....++..+..+.. .||++||+++.
T Consensus 136 Rv~lAraL~~~p~lllLDEPts~LD~------------~~~~~l~~~L~~~~~----tviivtHd~~~ 187 (263)
T 2pjz_A 136 LVRTSLALASQPEIVGLDEPFENVDA------------ARRHVISRYIKEYGK----EGILVTHELDM 187 (263)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTCCH------------HHHHHHHHHHHHSCS----EEEEEESCGGG
T ss_pred HHHHHHHHHhCCCEEEEECCccccCH------------HHHHHHHHHHHHhcC----cEEEEEcCHHH
Confidence 66678888889999999999866432 233344445544422 78999998765
No 318
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=97.38 E-value=0.0004 Score=60.70 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=46.9
Q ss_pred HHHHHhhccCCcccCCCEEEEeecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEc
Q 002169 190 QTCAASWLYSRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLY 262 (957)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~ 262 (957)
...++++|.||||.+||.|+++++|+.+.|.|.++.|. .++|+++|+|.+.
T Consensus 30 ~~~lk~~L~grPV~~GD~I~i~~~G~~i~F~Vv~t~P~----------------------~V~Vt~~T~I~i~ 80 (83)
T 2jv2_A 30 VDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYPS----------------------PLRVEDRTKITLV 80 (83)
T ss_dssp HHHHHHHHTTSEECTTCEEEEEETTEEEEEEEEEEESS----------------------SEECCTTSEEEEC
T ss_pred HHHHHHHHCCCCccCCCEEEEeeCCCEEEEEEEEecCc----------------------cEEECCCcEEEEE
Confidence 57889999999999999999999999999999999883 5899999999984
No 319
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.38 E-value=0.00034 Score=75.49 Aligned_cols=29 Identities=28% Similarity=0.232 Sum_probs=25.8
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
|+.++..++|+||||+|||||++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67789999999999999999999998643
No 320
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.36 E-value=0.00073 Score=70.72 Aligned_cols=39 Identities=33% Similarity=0.380 Sum_probs=30.1
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEec
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 362 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~ 362 (957)
.|+.++..++|+||||+|||+++..++... +..++.++.
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 478889999999999999999988776432 445555554
No 321
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.35 E-value=0.0001 Score=88.37 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=28.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+++++.+.|+||+|+|||||++++++..
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678899999999999999999999999765
No 322
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.35 E-value=0.0012 Score=78.91 Aligned_cols=170 Identities=11% Similarity=0.154 Sum_probs=93.2
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHH-------h--CCcEEEEeCC
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE-------A--GLNFLAVKGP 714 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~-------~--~~~~i~v~~~ 714 (957)
.-..++|.+...+.|.+.+... ....+-++++||+|+|||+||+.++.. . +.-++.+...
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 3456899999999998877421 112345899999999999999999743 1 1223444332
Q ss_pred Cc---cccc----------------ccchHHHHHHHHHHHHh--CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHH
Q 002169 715 EL---FSKW----------------VGESEKAVRSLFAKARA--NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 773 (957)
Q Consensus 715 ~l---~~~~----------------vg~~~~~ir~~f~~A~~--~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL 773 (957)
+. .... .......+...+..... ..|.+|+||+++... .+
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------------~l 251 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------------VL 251 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------------HH
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------------HH
Confidence 11 0000 00111222222322222 268899999997421 12
Q ss_pred HHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCc
Q 002169 774 VELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCT 851 (957)
Q Consensus 774 ~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~s 851 (957)
. .+ ..+..||+||........ .. +..-.+......+.++-.+++................++++.+.|..
T Consensus 252 ~---~l--~~~~~ilvTsR~~~~~~~--~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 252 K---AF--DSQCQILLTTRDKSVTDS--VM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp H---TT--CSSCEEEEEESCGGGGTT--CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred H---Hh--cCCCeEEEECCCcHHHHh--cC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 2 22 225677777765432111 11 22111111246788888888887765321112335678888998854
No 323
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.35 E-value=0.00043 Score=72.70 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHH-HhccccCCcEEEEEecCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE-LDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~-ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.|..+++|....|.+|++||+.+.++. .....++.. +.... .+.+||++||+++.
T Consensus 137 qrv~lAral~~~p~lllLDEPts~LD~------------~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~ 192 (229)
T 2pze_A 137 ARISLARAVYKDADLYLLDSPFGYLDV------------LTEKEIFESCVCKLM--ANKTRILVTSKMEH 192 (229)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTSCH------------HHHHHHHHHCCCCCT--TTSEEEEECCCHHH
T ss_pred HHHHHHHHHhcCCCEEEEECcccCCCH------------HHHHHHHHHHHHHhh--CCCEEEEEcCChHH
Confidence 366788888899999999999866533 223334443 23332 25688999997643
No 324
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.35 E-value=6.9e-05 Score=90.08 Aligned_cols=33 Identities=33% Similarity=0.582 Sum_probs=29.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++.+++++.+.|+||+|+|||||++++++....
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 407 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV 407 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC
Confidence 467889999999999999999999999987643
No 325
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.35 E-value=6.3e-05 Score=90.16 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=29.2
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++.+++++.+.|+||+|+|||||++++++....
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 367889999999999999999999999987643
No 326
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.34 E-value=2.5e-05 Score=83.05 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=27.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++.+
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3667899999999999999999999999765
No 327
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.34 E-value=0.00011 Score=88.04 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+-.+.. ..+ .+...+..+.. +.++|.+||+++.
T Consensus 488 r~~iAral~~~p~illlDEpts~LD~~---------~~~---~i~~~l~~~~~--~~tvi~itH~~~~ 541 (582)
T 3b5x_A 488 RVAIARALLRDAPVLILDEATSALDTE---------SER---AIQAALDELQK--NKTVLVIAHRLST 541 (582)
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHH---------HHH---HHHHHHHHHcC--CCEEEEEecCHHH
Confidence 566778888899999999999765432 222 23333333322 5678899998754
No 328
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.33 E-value=9.6e-05 Score=88.45 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.||++||+.+-.+.. ..+.+.+.+..+. . +.++|++||+.+.+
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~---------~~~~i~~~l~~~~---~--~~t~i~itH~l~~~ 539 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLE---------SESIIQEALDVLS---K--DRTTLIVAHRLSTI 539 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHH---------HHHHHHHHHHHHT---T--TSEEEEECSSGGGT
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHH---------HHHHHHHHHHHHc---C--CCEEEEEecCHHHH
Confidence 667788888899999999999765432 2333333333332 2 35788899988753
No 329
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.32 E-value=0.00047 Score=70.28 Aligned_cols=24 Identities=42% Similarity=0.713 Sum_probs=21.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l 353 (957)
..+.|+||+|+||||+++.+++.+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468899999999999999999876
No 330
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.32 E-value=0.00055 Score=74.90 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=69.5
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh-----CCcEEEEeCCCcccc----ccc-----------chHHHH-HHHHHH
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA-----GLNFLAVKGPELFSK----WVG-----------ESEKAV-RSLFAK 734 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~-----~~~~i~v~~~~l~~~----~vg-----------~~~~~i-r~~f~~ 734 (957)
|+.+. -++++||||+|||+|+-.++... +...+.++..+-+.. -.| .....+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 58999999999999988776543 556777777553321 001 011122 222222
Q ss_pred ---HHhCCCeEEEEeCCchhhhhc---CCCCCC-Cc--chHHHHHHHHHHHhccccCCcEEEEEecCC
Q 002169 735 ---ARANAPSIIFFDEIDGLAAIR---GKESDG-VS--VSDRVMSQLLVELDGLHQRVNVTVIAATNR 793 (957)
Q Consensus 735 ---A~~~~p~ILfiDEid~l~~~r---~~~~~~-~~--~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~ 793 (957)
++..+|.+|++|-|.++.+.. +..++. .+ ...|.+++.|..|.++....++.+|++-+-
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 355689999999999997421 111110 01 345677888777766666667877776543
No 331
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.30 E-value=0.00023 Score=88.85 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=59.1
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHH-----hCC----cEEEE----------eCCCcccccccchHHHHHHHHHHHH-hC
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASE-----AGL----NFLAV----------KGPELFSKWVGESEKAVRSLFAKAR-AN 738 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~-----~~~----~~i~v----------~~~~l~~~~vg~~~~~ir~~f~~A~-~~ 738 (957)
...-++|.||+|+||||+.|.++.. .+. ....+ ...+.............+++...++ ..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~ 751 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKAT 751 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhcc
Confidence 3445899999999999999998743 121 11111 1111111111222222223222222 57
Q ss_pred CCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCCh
Q 002169 739 APSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDP 799 (957)
Q Consensus 739 ~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~ 799 (957)
.|++|++||+.+..+.. ....+...++..+. ...+..+|++||+.+...-
T Consensus 752 ~p~LlLLDEP~~GlD~~--------~~~~i~~~il~~L~---~~~g~tvl~vTH~~el~~l 801 (918)
T 3thx_B 752 SQSLVILDELGRGTSTH--------DGIAIAYATLEYFI---RDVKSLTLFVTHYPPVCEL 801 (918)
T ss_dssp TTCEEEEESTTTTSCHH--------HHHHHHHHHHHHHH---HTTCCEEEEECSCGGGGGH
T ss_pred CCCEEEEeCCCCCCCHH--------HHHHHHHHHHHHHH---HhcCCeEEEEeCcHHHHHH
Confidence 79999999998654321 12233334555442 2236789999999876543
No 332
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.29 E-value=7.2e-05 Score=89.52 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=29.1
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++.+++++.+.|+||+|+|||||++++++....
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 393 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV 393 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcCCCC
Confidence 467889999999999999999999999987643
No 333
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.28 E-value=0.00051 Score=74.67 Aligned_cols=113 Identities=15% Similarity=0.167 Sum_probs=61.8
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCCCc----c--------c---------------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPEL----F--------S--------------------- 718 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~~l----~--------~--------------------- 718 (957)
++.+..-++|.||||+||||+++.||... |.+.+.+....- . .
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 110 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ 110 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHH
Confidence 56666679999999999999999998764 434544433210 0 0
Q ss_pred ----------cccc-----chHHHHH-HHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchH-HHHHHHHHHHhcccc
Q 002169 719 ----------KWVG-----ESEKAVR-SLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSD-RVMSQLLVELDGLHQ 781 (957)
Q Consensus 719 ----------~~vg-----~~~~~ir-~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~-~v~~~LL~~ld~~~~ 781 (957)
-++. .+...++ .+.+.+....|.+|+|||+..+.... . .... ..+..++..|..+..
T Consensus 111 ~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~-~-----~~d~~~~~~~i~~~L~~la~ 184 (296)
T 1cr0_A 111 WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSAS-G-----ESDERKMIDNLMTKLKGFAK 184 (296)
T ss_dssp HHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCC-C-----CCCHHHHHHHHHHHHHHHHH
Confidence 0000 1111222 22233466789999999999875321 0 0111 233444455544433
Q ss_pred CCcEEEEEecCCC
Q 002169 782 RVNVTVIAATNRP 794 (957)
Q Consensus 782 ~~~v~VI~aTN~~ 794 (957)
..++.||++||..
T Consensus 185 ~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 185 STGVVLVVICHLK 197 (296)
T ss_dssp HHCCEEEEEEECC
T ss_pred HhCCeEEEEEecC
Confidence 4477889998874
No 334
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.28 E-value=0.00033 Score=82.94 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.|..+++|....|.||++||+.+-++. .....++..|..+.. .+..||++||+.+.
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~------------~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~ 220 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDI------------RQRLNAARAIRRLSE-EGKSVLVVEHDLAV 220 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCH------------HHHHHHHHHHHHHHH-TTCEEEEECSCHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCH------------HHHHHHHHHHHHHHh-cCCEEEEEeCCHHH
Confidence 377888999999999999999966533 223334444444433 26789999997654
No 335
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.28 E-value=0.00043 Score=73.69 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=27.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHH
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~ 352 (957)
++.+.+++.+.|.||+|+|||||++++++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 366788999999999999999999999986
No 336
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.27 E-value=0.0001 Score=88.38 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=28.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+++++.+.|.||+|+|||||++++++...
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 46788999999999999999999999998764
No 337
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.26 E-value=0.00028 Score=84.58 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
.|..+++|....|.||++||+.+-.+.. ..+ .+...+.... .+.++|++||+.+.
T Consensus 486 Qrv~lARal~~~p~illlDEpts~LD~~---------~~~---~i~~~l~~~~--~~~tvi~itH~l~~ 540 (587)
T 3qf4_A 486 QRLSIARALVKKPKVLILDDCTSSVDPI---------TEK---RILDGLKRYT--KGCTTFIITQKIPT 540 (587)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCTTSCHH---------HHH---HHHHHHHHHS--TTCEEEEEESCHHH
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHH---------HHH---HHHHHHHHhC--CCCEEEEEecChHH
Confidence 3677888888999999999999765432 222 2333333332 25788999998753
No 338
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.25 E-value=0.00017 Score=86.26 Aligned_cols=54 Identities=26% Similarity=0.339 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+-.+.. ..+.+.+.+..+. . +.++|.+||+++.
T Consensus 488 rl~iAral~~~p~illlDEpts~LD~~---------~~~~i~~~l~~~~---~--~~tvi~itH~~~~ 541 (582)
T 3b60_A 488 RIAIARALLRDSPILILDEATSALDTE---------SERAIQAALDELQ---K--NRTSLVIAHRLST 541 (582)
T ss_dssp HHHHHHHHHHCCSEEEEETTTSSCCHH---------HHHHHHHHHHHHH---T--TSEEEEECSCGGG
T ss_pred HHHHHHHHHhCCCEEEEECccccCCHH---------HHHHHHHHHHHHh---C--CCEEEEEeccHHH
Confidence 566777878889999999999765432 2222333333332 2 5678899998764
No 339
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.25 E-value=0.00058 Score=77.10 Aligned_cols=74 Identities=23% Similarity=0.402 Sum_probs=48.8
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHhC----CcEEEEeCC-Cc-ccc---cccc-----hHHHHHHHHHHHHhCCCe
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEAG----LNFLAVKGP-EL-FSK---WVGE-----SEKAVRSLFAKARANAPS 741 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~~----~~~i~v~~~-~l-~~~---~vg~-----~~~~ir~~f~~A~~~~p~ 741 (957)
...+...++|.||+|+||||++++|++... ..++.+..+ ++ ... ++.+ ....++..+..+....|.
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd 211 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD 211 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCS
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcC
Confidence 344555699999999999999999998653 333333322 11 000 1211 223446778888888999
Q ss_pred EEEEeCCc
Q 002169 742 IIFFDEID 749 (957)
Q Consensus 742 ILfiDEid 749 (957)
+|++||+.
T Consensus 212 ~illdE~~ 219 (372)
T 2ewv_A 212 VIFVGEMR 219 (372)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99999995
No 340
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.25 E-value=0.0004 Score=76.61 Aligned_cols=115 Identities=16% Similarity=0.198 Sum_probs=67.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---------------C----CcEEEEecccccc-c----------------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---------------G----VNLFTVNGPEVVS-Q---------------- 368 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---------------~----~~~i~i~~~~l~~-~---------------- 368 (957)
|++++.-++|+||||+|||++|..+|... | ..+++++...-+. .
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 67888899999999999999999998652 2 4566777544210 0
Q ss_pred ----cc---chhH---HHHHHHHHHHhc-cCCeEEEEcCccccccCCcCCCchH--HHHHHHHHHHHhhccccCCCeEEE
Q 002169 369 ----NY---GESE---QALHEVFDSASQ-SAPAVVFIDELDAIAPARKDGGEEL--SQRMVATLLNLMDGVCRTDGVLVI 435 (957)
Q Consensus 369 ----~~---ge~e---~~i~~vf~~a~~-~~p~IL~IDEiD~l~~~~~~~~~~~--~~~i~~~Ll~~ld~l~~~~~v~vI 435 (957)
++ ...+ ..+..+.+.+.. ..+.+|+||.+..+......+..+. ....+.+++..|..+....++.||
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 00 0011 112223333334 5688999999988864321111111 123445556666555555677777
Q ss_pred EecC
Q 002169 436 AATN 439 (957)
Q Consensus 436 ~ttN 439 (957)
++..
T Consensus 254 ~~nq 257 (322)
T 2i1q_A 254 VTNQ 257 (322)
T ss_dssp EEEC
T ss_pred EECc
Confidence 7643
No 341
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.25 E-value=0.00014 Score=74.34 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=30.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+.+.+++.|+|+|||||||||+++++|+.++..++..
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4566788999999999999999999999999887644
No 342
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.23 E-value=0.00049 Score=68.49 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=29.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEec
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNG 362 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~ 362 (957)
+..|+|+|+||+||||+++.++..++..++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 4578999999999999999999999988877654
No 343
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.23 E-value=0.0033 Score=81.34 Aligned_cols=169 Identities=9% Similarity=0.081 Sum_probs=100.0
Q ss_pred cccccCChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh---C----CcEEEEeCCCc
Q 002169 644 KWEDVGGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA---G----LNFLAVKGPEL 716 (957)
Q Consensus 644 ~~~di~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~----~~~i~v~~~~l 716 (957)
.-..++|.++..++|.+.+... -...+-+.|+|+.|+|||+||+.+++.. . ...+.+.....
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 4456899999999998877421 1223448899999999999999987652 1 22334443331
Q ss_pred ccc---------------------cccchHHHHHHHHHHHHhCC--CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHH
Q 002169 717 FSK---------------------WVGESEKAVRSLFAKARANA--PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLL 773 (957)
Q Consensus 717 ~~~---------------------~vg~~~~~ir~~f~~A~~~~--p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL 773 (957)
... ........+...+....... +.+|+||+++...
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------- 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------- 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------------------
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------------------
Confidence 100 00112223333344333333 7899999998431
Q ss_pred HHHhccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCC-CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHccCCc
Q 002169 774 VELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGP-PNETDREEIFRIHLRKIPCSSDVNIRELACLSEGCT 851 (957)
Q Consensus 774 ~~ld~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~-P~~~er~~Il~~~l~~~~~~~~~~l~~la~~t~g~s 851 (957)
.++.+ ..+..||+||......... . .....+.++. .+.++-.++|..+.....-.......++++.+.|..
T Consensus 250 -~~~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 250 -VLKAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp -HHTTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred -HHHhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 12222 2245788888765442111 1 2234667775 788888888887774433223345778888998854
No 344
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.23 E-value=0.00016 Score=80.40 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=51.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEecccccc-----c---ccchhHHHHHHHHHHHhccCCeEEEE
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPEVVS-----Q---NYGESEQALHEVFDSASQSAPAVVFI 394 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~~~~l~~-----~---~~ge~e~~i~~vf~~a~~~~p~IL~I 394 (957)
.+.+++.++|.||+|+|||||++++++.+.. ..+.+++..... . ++.......+..+..|....|.+|++
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilil 246 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIIL 246 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEE
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEE
Confidence 3456788999999999999999999988743 345666543211 0 11002234556777788889999999
Q ss_pred cCcc
Q 002169 395 DELD 398 (957)
Q Consensus 395 DEiD 398 (957)
||.-
T Consensus 247 dE~~ 250 (330)
T 2pt7_A 247 GELR 250 (330)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9964
No 345
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.20 E-value=0.00051 Score=70.00 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.9
Q ss_pred cceeeCCCCChhhHHHHHHHHHh
Q 002169 682 GILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
.+.|+||+|+||||+++.|++.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999875
No 346
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.19 E-value=0.00021 Score=76.73 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=46.9
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCC---cEEEEecccc----------ccc-ccchhHHHHHHHHHHHhccCCeE
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGV---NLFTVNGPEV----------VSQ-NYGESEQALHEVFDSASQSAPAV 391 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~---~~i~i~~~~l----------~~~-~~ge~e~~i~~vf~~a~~~~p~I 391 (957)
+.++..++|.||+|+||||+++++++.+.. --+.+.+..+ +.+ .+|.....++..+..+....|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 677888999999999999999999986532 1222322211 000 01111123456677777778999
Q ss_pred EEEcCc
Q 002169 392 VFIDEL 397 (957)
Q Consensus 392 L~IDEi 397 (957)
|++||.
T Consensus 102 lllDEp 107 (261)
T 2eyu_A 102 IFVGEM 107 (261)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 999997
No 347
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.18 E-value=0.0015 Score=75.07 Aligned_cols=72 Identities=21% Similarity=0.158 Sum_probs=48.8
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc-------------------ccc-cchHHHHHHHHHHHH
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS-------------------KWV-GESEKAVRSLFAKAR 736 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~-------------------~~v-g~~~~~ir~~f~~A~ 736 (957)
+.-+++.|++|+||||++..||..+ +.....+.+..... ... ......++..++.++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4558999999999999999998765 55555555432211 011 122334467788888
Q ss_pred hCCCeEEEEeCCchh
Q 002169 737 ANAPSIIFFDEIDGL 751 (957)
Q Consensus 737 ~~~p~ILfiDEid~l 751 (957)
...+.++++|.+..+
T Consensus 180 ~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRH 194 (443)
T ss_dssp HTTCSEEEEECCCCS
T ss_pred hCCCCEEEEECCCcc
Confidence 877889999988543
No 348
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.18 E-value=0.0042 Score=74.09 Aligned_cols=165 Identities=13% Similarity=0.127 Sum_probs=91.9
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHH-------cCCcEE--EEeccc--
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHD-------SGVNLF--TVNGPE-- 364 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~-------l~~~~i--~i~~~~-- 364 (957)
..++|.+.+++.|.+.+... -...+.|+|+||+|+|||+||+.++.. .....+ .+...+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~ 193 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKS 193 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHH
T ss_pred CeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchH
Confidence 45789999999998885321 123457889999999999999988642 211233 333221
Q ss_pred -ccccc----------------cchhHHHHHHHHHHHhcc--CCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhc
Q 002169 365 -VVSQN----------------YGESEQALHEVFDSASQS--APAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 425 (957)
Q Consensus 365 -l~~~~----------------~ge~e~~i~~vf~~a~~~--~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~ 425 (957)
+.... .......+...+...... .|.+|+||+++.. ..+ +.
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----------------~~l---~~ 253 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----------------WVL---KA 253 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----------------HHH---HT
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----------------HHH---HH
Confidence 00000 001111222222222222 5889999998642 011 22
Q ss_pred cccCCCeEEEEecCCCCCchhhhhCCCCcceeeee---cCCCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCc
Q 002169 426 VCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEI---AVPSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 499 (957)
Q Consensus 426 l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i---~~P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ 499 (957)
+ ..+..||+||...... .... + ..+.+ +..+.++-.++|...+...... .+.....+++.+.|.-
T Consensus 254 l--~~~~~ilvTsR~~~~~-~~~~--~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 254 F--DSQCQILLTTRDKSVT-DSVM--G---PKYVVPVESSLGKEKGLEILSLFVNMKKAD-LPEQAHSIIKECKGSP 321 (591)
T ss_dssp T--CSSCEEEEEESCGGGG-TTCC--S---CEEEEECCSSCCHHHHHHHHHHHHTSCGGG-SCTHHHHHHHHHTTCH
T ss_pred h--cCCCeEEEECCCcHHH-HhcC--C---CceEeecCCCCCHHHHHHHHHHHhCCCccc-ccHHHHHHHHHhCCCc
Confidence 2 2355777777653311 1111 1 22344 3678889999998877542211 2345778888888764
No 349
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00058 Score=81.83 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+++|....|.||++||+.+.++. .....+...+..+... +..||++||+.+.+
T Consensus 229 rv~iAraL~~~p~llllDEPts~LD~------------~~~~~l~~~l~~l~~~-g~tvi~vtHdl~~~ 284 (608)
T 3j16_B 229 RFAIGMSCVQEADVYMFDEPSSYLDV------------KQRLNAAQIIRSLLAP-TKYVICVEHDLSVL 284 (608)
T ss_dssp HHHHHHHHHSCCSEEEEECTTTTCCH------------HHHHHHHHHHHGGGTT-TCEEEEECSCHHHH
T ss_pred HHHHHHHHHhCCCEEEEECcccCCCH------------HHHHHHHHHHHHHHhC-CCEEEEEeCCHHHH
Confidence 66788888899999999999976533 2233455555555443 56889999987653
No 350
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.17 E-value=0.0037 Score=74.17 Aligned_cols=144 Identities=14% Similarity=0.075 Sum_probs=83.7
Q ss_pred CCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHH----HcCCcE---EEEeccccc-----
Q 002169 299 GGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAH----DSGVNL---FTVNGPEVV----- 366 (957)
Q Consensus 299 ~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~----~l~~~~---i~i~~~~l~----- 366 (957)
.|.+..++.|.+.+... +-...+.|.|+|+.|+||||||+.+++ ....+| +.++.+.-.
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49999999998886322 112346788999999999999999996 333332 223322210
Q ss_pred c---c---ccc------------h-hHHHHHHHHHHHhccC-CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhcc
Q 002169 367 S---Q---NYG------------E-SEQALHEVFDSASQSA-PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGV 426 (957)
Q Consensus 367 ~---~---~~g------------e-~e~~i~~vf~~a~~~~-p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l 426 (957)
. . ..+ + ....+...+....... +.+|++|+++... ++ .+..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~--~~~~- 262 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI--RWAQ- 262 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH--HHHH-
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh--cccc-
Confidence 0 0 000 0 1122333444444554 8899999986531 11 1111
Q ss_pred ccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecCCCHHHHHHHHHHHH
Q 002169 427 CRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAVPSPAQRLEILHALL 476 (957)
Q Consensus 427 ~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~P~~~~r~~Il~~~l 476 (957)
..+..||+||.... +.... +..+..+.++..+.++-.++|..+.
T Consensus 263 --~~gs~ilvTTR~~~-v~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 263 --ELRLRCLVTTRDVE-ISNAA---SQTCEFIEVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp --HTTCEEEEEESBGG-GGGGC---CSCEEEEECCCCCHHHHHHHHHHTS
T ss_pred --cCCCEEEEEcCCHH-HHHHc---CCCCeEEECCCCCHHHHHHHHHHHh
Confidence 14556777776432 22111 1123458899999999999998774
No 351
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.15 E-value=0.0048 Score=79.74 Aligned_cols=167 Identities=12% Similarity=0.085 Sum_probs=98.2
Q ss_pred cccCCcHHHHHHHHHHHHhhhhhhhhhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHc---C----CcEEEEecccccc-
Q 002169 296 SKLGGLSKEYAILKDIIISSSVKSTLSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDS---G----VNLFTVNGPEVVS- 367 (957)
Q Consensus 296 ~~i~Gl~~~~~~l~e~i~~~~~~~~~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l---~----~~~i~i~~~~l~~- 367 (957)
..+.|.+++++.|.+.+... -...+-|.|+|+.|+|||+||+.++... . ..++.++.+....
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred ceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 46899999999999886322 1234568899999999999999887542 1 1233444322100
Q ss_pred --------------------cccchhHHHHHHHHHHHhccC--CeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhc
Q 002169 368 --------------------QNYGESEQALHEVFDSASQSA--PAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDG 425 (957)
Q Consensus 368 --------------------~~~ge~e~~i~~vf~~a~~~~--p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~ 425 (957)
.........+...+....... +.+|+||+++... .++.
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------~~~~ 253 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------VLKA 253 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------HHTT
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------HHHh
Confidence 000112223334444444444 7899999987431 1222
Q ss_pred cccCCCeEEEEecCCCCCchhhhhCCCCcceeeeecC-CCHHHHHHHHHHHHcCCCCCCChHHHHHHHHHcCCCc
Q 002169 426 VCRTDGVLVIAATNRPDSIEPALRRPGRLDREIEIAV-PSPAQRLEILHALLSGMEHSLLDSEVEYLSMATHGFV 499 (957)
Q Consensus 426 l~~~~~v~vI~ttN~~~~ld~al~r~gRfd~~I~i~~-P~~~~r~~Il~~~l~~~~~~l~~~~l~~La~~t~g~~ 499 (957)
+ ..+..||+||........ +. .....+.++. .+.++-.++|.......... .+.....+++.+.|.-
T Consensus 254 ~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 254 F--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSP 321 (1249)
T ss_dssp T--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCH
T ss_pred h--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCH
Confidence 2 234567778765432211 11 2234467775 88899999998877544333 2345677888887764
No 352
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.15 E-value=0.00043 Score=90.37 Aligned_cols=113 Identities=19% Similarity=0.351 Sum_probs=71.4
Q ss_pred HHhcC--CCCCCcceeeCCCCChhhHHHHHHHHHhCC--cEEEEeCCCc---------------------ccc-------
Q 002169 672 FKRIG--TRPPTGILMFGPPGCSKTLMARAVASEAGL--NFLAVKGPEL---------------------FSK------- 719 (957)
Q Consensus 672 ~~~l~--~~~~~giLL~GPpGtGKTtlAkaiA~~~~~--~~i~v~~~~l---------------------~~~------- 719 (957)
++++. +++...+.++||+|+||||++++|.+.... .-|.+++.++ ++.
T Consensus 434 L~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~ 513 (1321)
T 4f4c_A 434 LRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENIS 513 (1321)
T ss_dssp EEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHH
T ss_pred eeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHh
Confidence 44444 445555999999999999999999987643 2344443211 110
Q ss_pred ---------------------------------cccc------hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCC
Q 002169 720 ---------------------------------WVGE------SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESD 760 (957)
Q Consensus 720 ---------------------------------~vg~------~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~ 760 (957)
.+|+ ..++.|..+++|.-..|.||+|||+.+-.+..
T Consensus 514 ~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~----- 588 (1321)
T 4f4c_A 514 LGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE----- 588 (1321)
T ss_dssp TTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTT-----
T ss_pred hhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHH-----
Confidence 1111 12334778888888999999999999776532
Q ss_pred CCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 761 GVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 761 ~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
.++.+.+.+..+- .+.++|.+||+...+.
T Consensus 589 ----te~~i~~~l~~~~-----~~~T~iiiaHrls~i~ 617 (1321)
T 4f4c_A 589 ----SEGIVQQALDKAA-----KGRTTIIIAHRLSTIR 617 (1321)
T ss_dssp ----THHHHHHHHHHHH-----TTSEEEEECSCTTTTT
T ss_pred ----HHHHHHHHHHHHh-----CCCEEEEEcccHHHHH
Confidence 2333333333321 2457888999998763
No 353
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.12 E-value=0.00029 Score=83.37 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=27.0
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
+.+.+++.+.|.||+|+|||||++++++.+
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999999999865
No 354
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.11 E-value=0.00099 Score=72.51 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHH-HhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVE-LDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~-ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.+|++||+.+.++. .....++.. +..+. .+.+||++||+++.
T Consensus 167 Rv~lAraL~~~p~lllLDEPts~LD~------------~~~~~i~~~ll~~~~--~~~tviivtHd~~~ 221 (290)
T 2bbs_A 167 RISLARAVYKDADLYLLDSPFGYLDV------------LTEKEIFESCVCKLM--ANKTRILVTSKMEH 221 (290)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCH------------HHHHHHHHHCCCCCT--TTSEEEEECCCHHH
T ss_pred HHHHHHHHHCCCCEEEEECCcccCCH------------HHHHHHHHHHHHHhh--CCCEEEEEecCHHH
Confidence 56778888899999999999866533 223344443 23332 25689999997643
No 355
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.10 E-value=0.00048 Score=72.35 Aligned_cols=32 Identities=22% Similarity=0.324 Sum_probs=28.6
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+.+++.+.|.||+|+|||||++++++.+.
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 36678899999999999999999999998764
No 356
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.09 E-value=0.00061 Score=75.15 Aligned_cols=115 Identities=13% Similarity=0.165 Sum_probs=68.3
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---------------C----CcEEEEeCCCcccc-----c---cc------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---------------G----LNFLAVKGPELFSK-----W---VG------ 722 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---------------~----~~~i~v~~~~l~~~-----~---vg------ 722 (957)
|+++..-++|+||||+|||++|..+|... + .+.+.++...-+.. + .|
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 45555569999999999999999998752 2 45666665543210 0 00
Q ss_pred ----------chHH---HHHHHHHHHHh-CCCeEEEEeCCchhhhhcCCCCCCCcch--HHHHHHHHHHHhccccCCcEE
Q 002169 723 ----------ESEK---AVRSLFAKARA-NAPSIIFFDEIDGLAAIRGKESDGVSVS--DRVMSQLLVELDGLHQRVNVT 786 (957)
Q Consensus 723 ----------~~~~---~ir~~f~~A~~-~~p~ILfiDEid~l~~~r~~~~~~~~~~--~~v~~~LL~~ld~~~~~~~v~ 786 (957)
..+. .+..+.+.++. ..+.+|+||.+..+....... . .... ...+.+++..|..+....++.
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~-~-~~~~~r~~~~~~~~~~L~~la~~~~~~ 251 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTG-R-GKLAERQQKLGRHMATLNKLADLFNCV 251 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCC-T-TSHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcC-C-ccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 0111 12223334444 678899999999987432111 0 1122 234667777777665566777
Q ss_pred EEEecC
Q 002169 787 VIAATN 792 (957)
Q Consensus 787 VI~aTN 792 (957)
||++.+
T Consensus 252 vi~~nq 257 (322)
T 2i1q_A 252 VLVTNQ 257 (322)
T ss_dssp EEEEEC
T ss_pred EEEECc
Confidence 777654
No 357
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.09 E-value=0.00043 Score=70.16 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=22.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH---cCCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHD---SGVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~---l~~~~i~i 360 (957)
+.-++++||+|+||||++..++.. .+..++.+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 456789999999999998655543 25554443
No 358
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.05 E-value=0.0016 Score=68.02 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=27.7
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeC
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKG 713 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~ 713 (957)
|+.+..-++|+||||+|||+++..+|... +.+.+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 45666669999999999999998886542 445555543
No 359
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.03 E-value=0.00029 Score=71.00 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=33.7
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 365 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l 365 (957)
++.++..++|.||||+||||+++++++..+...+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 46678889999999999999999999887766777776544
No 360
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.03 E-value=0.0011 Score=74.84 Aligned_cols=77 Identities=26% Similarity=0.481 Sum_probs=49.0
Q ss_pred hhhcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC----CcEEEEecc-cc--------ccc-ccchhHHHHHHHHHHHhc
Q 002169 321 LSSLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG----VNLFTVNGP-EV--------VSQ-NYGESEQALHEVFDSASQ 386 (957)
Q Consensus 321 ~~~l~i~~~~~vLL~GppGtGKTtLaralA~~l~----~~~i~i~~~-~l--------~~~-~~ge~e~~i~~vf~~a~~ 386 (957)
+.++.+.++..++|+||+|+||||+++++++.+. ..++.+..+ ++ +.+ .+|.....+...+..+..
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 3344567788899999999999999999998653 233333321 10 111 011111223455666777
Q ss_pred cCCeEEEEcCc
Q 002169 387 SAPAVVFIDEL 397 (957)
Q Consensus 387 ~~p~IL~IDEi 397 (957)
..|.+|++||+
T Consensus 208 ~~pd~illdE~ 218 (372)
T 2ewv_A 208 EDPDVIFVGEM 218 (372)
T ss_dssp SCCSEEEESCC
T ss_pred hCcCEEEECCC
Confidence 78999999997
No 361
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.01 E-value=0.0018 Score=67.59 Aligned_cols=72 Identities=21% Similarity=0.186 Sum_probs=42.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccc-------ccccccchh-H----HHHHHHHHHHhc----cC
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPE-------VVSQNYGES-E----QALHEVFDSASQ----SA 388 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~-------l~~~~~ge~-e----~~i~~vf~~a~~----~~ 388 (957)
++.-++++||+|+||||++..++..+ +..++.+.... +.+. .|-. + .....+++.+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 35567788999999999988777654 55665553211 1111 1100 0 011234444433 35
Q ss_pred CeEEEEcCcccc
Q 002169 389 PAVVFIDELDAI 400 (957)
Q Consensus 389 p~IL~IDEiD~l 400 (957)
+.+|+|||+..+
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 889999999765
No 362
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.01 E-value=0.00032 Score=72.58 Aligned_cols=96 Identities=22% Similarity=0.344 Sum_probs=0.0
Q ss_pred ceeeCCCCChhhHHHHHHHHHhC---------------------CcEEEEeCCCccccccc---------chHHHHHHHH
Q 002169 683 ILMFGPPGCSKTLMARAVASEAG---------------------LNFLAVKGPELFSKWVG---------ESEKAVRSLF 732 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~---------------------~~~i~v~~~~l~~~~vg---------~~~~~ir~~f 732 (957)
+.|.||+|+|||||+++|++. . ..++.=+..+.+..+.. .....+..++
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~~~~~~l 103 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPEVIPKLM 103 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTTHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Q ss_pred H------------HHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCC
Q 002169 733 A------------KARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKID 798 (957)
Q Consensus 733 ~------------~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id 798 (957)
+ +|....|.||++||+.+. ... .+...+..+ ..+..|| +||+.+.++
T Consensus 104 ~~glGq~qrv~lAraL~~~p~lllLDEPts~-~~~---------------~l~~~l~~l--~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 104 EAGIVEVAPLAYMRGRTLNDAFVILDEAQNT-TPA---------------QMKMFLTRL--GFGSKMV-VTGDITQVD 162 (208)
T ss_dssp HTTSEEEEEGGGGTTCCBCSEEEEECSGGGC-CHH---------------HHHHHHTTB--CTTCEEE-EEEC-----
T ss_pred HhCCchHHHHHHHHHHhcCCCEEEEeCCccc-cHH---------------HHHHHHHHh--cCCCEEE-EECCHHHHh
No 363
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.00 E-value=0.0016 Score=81.37 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=23.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHH
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAH 351 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~ 351 (957)
.+..++.++|+||+|+||||+.|.++.
T Consensus 669 ~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 669 SEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 455678899999999999999999874
No 364
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.98 E-value=0.0011 Score=83.09 Aligned_cols=106 Identities=14% Similarity=0.031 Sum_probs=55.2
Q ss_pred CcceeeCCCCChhhHHHHHHHHH-----hCC--cE--EEE----------eCCCcccccccchHHHHHHHHHHH-HhCCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASE-----AGL--NF--LAV----------KGPELFSKWVGESEKAVRSLFAKA-RANAP 740 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~-----~~~--~~--i~v----------~~~~l~~~~vg~~~~~ir~~f~~A-~~~~p 740 (957)
.-++|.||+|+||||+.|.+|.. .|. |. ..+ ...+........+......+...+ ....|
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~ 742 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKD 742 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCC
Confidence 34899999999999999999532 232 11 111 111111111111112222221111 15678
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
++|+|||+.+..+.. ....+...++..+. ...+..+|++||+.+..
T Consensus 743 sLlLLDEp~~GlD~~--------~~~~i~~~il~~l~---~~~g~~vl~aTH~~el~ 788 (934)
T 3thx_A 743 SLIIIDELGRGTSTY--------DGFGLAWAISEYIA---TKIGAFCMFATHFHELT 788 (934)
T ss_dssp CEEEEESCSCSSCHH--------HHHHHHHHHHHHHH---HTTCCEEEEEESCGGGG
T ss_pred cEEEEeCCCCCCCHH--------HHHHHHHHHHHHHH---hcCCCEEEEEcCcHHHH
Confidence 999999998654321 12233344555543 22367889999986643
No 365
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.97 E-value=0.00041 Score=70.81 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=29.4
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
+.+...++|.|||||||||++++||..++.+++..
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 34556799999999999999999999999988754
No 366
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.96 E-value=0.0016 Score=75.54 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=31.8
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEec
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNG 362 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~ 362 (957)
.|+.++.-++|.|+||+|||+++..+|... |.+++.++.
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 478899999999999999999999888643 556666653
No 367
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.95 E-value=0.00039 Score=69.77 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
++.|+|+|||||||||+++.+|..++..++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999887654
No 368
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.95 E-value=0.0015 Score=69.34 Aligned_cols=41 Identities=24% Similarity=0.465 Sum_probs=33.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 365 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l 365 (957)
....+..++|.|+||+||||+++.++..++..++.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34556789999999999999999999999866677777655
No 369
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.94 E-value=0.00061 Score=81.74 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
|..+++|....|.||++||+.+-++.. ..+.+.+++..+. . +.++|++||+++.
T Consensus 491 rv~iAral~~~p~illlDEpts~LD~~---------~~~~i~~~l~~~~---~--~~tvi~itH~~~~ 544 (595)
T 2yl4_A 491 RIAIARALLKNPKILLLDEATSALDAE---------NEYLVQEALDRLM---D--GRTVLVIAHRLST 544 (595)
T ss_dssp HHHHHHHHHHCCSEEEEECCCSSCCHH---------HHHHHHHHHHHHH---T--TSEEEEECCCHHH
T ss_pred HHHHHHHHHcCCCEEEEECcccCCCHH---------HHHHHHHHHHHHh---c--CCEEEEEecCHHH
Confidence 566777778889999999999765432 2333333333332 2 4578899998654
No 370
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.93 E-value=0.0012 Score=68.76 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=25.2
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
.+++++.+.|.||+|+|||||++++++...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356788999999999999999999999875
No 371
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.91 E-value=0.0018 Score=76.40 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=66.3
Q ss_pred CCCCCcceeeCCCCChhhHHHHH--HHHHh--CCcEEEEeCCCccc------c---ccc---------------------
Q 002169 677 TRPPTGILMFGPPGCSKTLMARA--VASEA--GLNFLAVKGPELFS------K---WVG--------------------- 722 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAka--iA~~~--~~~~i~v~~~~l~~------~---~vg--------------------- 722 (957)
+.+..-++|.||||+|||||+++ ++... +..-+.+++.+... . |+-
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~ 115 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQ 115 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCC
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchh
Confidence 44556699999999999999999 45543 34556665543100 0 000
Q ss_pred ----c--hHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 723 ----E--SEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 723 ----~--~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
. -...............|.+|+|||+..+.+.- ........+++..+..+.. .+++||++||+.+.
T Consensus 116 ~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~-------~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 116 EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY-------DASSVVRRELFRLVARLKQ-IGATTVMTTERIEE 187 (525)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT-------CCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSS
T ss_pred hhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc-------CCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCC
Confidence 0 01122334444555778899999998764321 1122333344444444433 37789999999876
Q ss_pred C
Q 002169 797 I 797 (957)
Q Consensus 797 i 797 (957)
+
T Consensus 188 ~ 188 (525)
T 1tf7_A 188 Y 188 (525)
T ss_dssp S
T ss_pred c
Confidence 4
No 372
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=96.90 E-value=0.00089 Score=69.06 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=49.3
Q ss_pred HHHHHHHhhcc--CCcccCCCEEEEeecCeeeEEEEEeecCCCCcCccCCCCccccccccCCCCcEEEcCCceEEEcC
Q 002169 188 LLQTCAASWLY--SRSLLCGNLVAVPMLSEISIFLVIGANKLPADLTNERSQPQVTESMDHESNAFVINHETKVYLYP 263 (957)
Q Consensus 188 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~T~v~~~~ 263 (957)
+...+++++|. ||||.+||.|.+++.+..+.|.|.+++|. ++++|+++|.|.+..
T Consensus 133 ~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~P~---------------------g~viV~~~T~I~~~~ 189 (211)
T 3qwz_A 133 LFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPS---------------------PYCIVAPDTVIHCEG 189 (211)
T ss_dssp HHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEEEESS---------------------SEEEECTTCEEECCS
T ss_pred hHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEeecCC---------------------CCEEECCCcEEEEcC
Confidence 55688888997 79999999999999999999999999996 689999999999854
No 373
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.89 E-value=0.00064 Score=68.45 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=29.3
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
+..+..|+|.|+||+||||+++.++..++..++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4556789999999999999999999999877654
No 374
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.89 E-value=0.00069 Score=81.28 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=28.7
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
++.+++++.+.|.||+|+|||||++++++...
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 46788999999999999999999999998764
No 375
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.89 E-value=0.0036 Score=73.21 Aligned_cols=75 Identities=17% Similarity=0.320 Sum_probs=51.9
Q ss_pred Ce-EEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC--CCChhhhCCCCcceecccCCC
Q 002169 740 PS-IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD--KIDPALLRPGRFDRLLYVGPP 816 (957)
Q Consensus 740 p~-ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~--~id~aLlr~gRfd~~i~~~~P 816 (957)
|. +|+|||++.+.... ... +..++..+-......++.+|++|+++. .++..++. .|...|-+...
T Consensus 297 P~ivlvIDE~~~ll~~~---------~~~-~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~ 364 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV---------GKK-VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVS 364 (512)
T ss_dssp CEEEEEEETHHHHHHHH---------HHH-HHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCS
T ss_pred CcEEEEEeCHHHHHhhh---------hHH-HHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcC
Confidence 54 89999999886421 111 223344443333445899999999997 57777776 77778888888
Q ss_pred CHHHHHHHHH
Q 002169 817 NETDREEIFR 826 (957)
Q Consensus 817 ~~~er~~Il~ 826 (957)
+..+...|+.
T Consensus 365 s~~dsr~ilg 374 (512)
T 2ius_A 365 SKIDSRTILD 374 (512)
T ss_dssp SHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 8888887765
No 376
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.88 E-value=0.0053 Score=71.77 Aligned_cols=75 Identities=24% Similarity=0.442 Sum_probs=50.2
Q ss_pred Ce-EEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC--CchhhhhCCCCcceeeeecCCCH
Q 002169 389 PA-VVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD--SIEPALRRPGRLDREIEIAVPSP 465 (957)
Q Consensus 389 p~-IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~--~ld~al~r~gRfd~~I~i~~P~~ 465 (957)
|. +++|||+..+... ....+ ..++..+-...+.-++.+|++|.++. .++..++. .|...|.+...+.
T Consensus 297 P~ivlvIDE~~~ll~~-------~~~~~-~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~ 366 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT-------VGKKV-EELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSK 366 (512)
T ss_dssp CEEEEEEETHHHHHHH-------HHHHH-HHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSH
T ss_pred CcEEEEEeCHHHHHhh-------hhHHH-HHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCH
Confidence 65 8999998776531 11122 22333332333445889999999987 57777776 6777788999999
Q ss_pred HHHHHHHH
Q 002169 466 AQRLEILH 473 (957)
Q Consensus 466 ~~r~~Il~ 473 (957)
.+...|+.
T Consensus 367 ~dsr~ilg 374 (512)
T 2ius_A 367 IDSRTILD 374 (512)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88887775
No 377
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.87 E-value=0.0021 Score=69.84 Aligned_cols=40 Identities=28% Similarity=0.477 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 365 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l 365 (957)
...+..|+|.||||+||||+++.++..++..++.|++..+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 3456778899999999999999999988555677776443
No 378
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.86 E-value=0.00089 Score=87.47 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=29.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++.+++++.+.|+||+|+|||||++++.++...
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 467889999999999999999999999987754
No 379
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.84 E-value=0.0014 Score=74.70 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCC--eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC
Q 002169 727 AVRSLFAKARANAP--SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD 795 (957)
Q Consensus 727 ~ir~~f~~A~~~~p--~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~ 795 (957)
.-|..++.+....| .||+|||+++-++ ......+...|..+. .+..||++||+++
T Consensus 301 ~qrl~lA~~l~~~~~~~~LlLDEpt~~LD------------~~~~~~l~~~L~~l~--~~~~vi~itH~~~ 357 (415)
T 4aby_A 301 LSRVMLAVSTVLGADTPSVVFDEVDAGIG------------GAAAIAVAEQLSRLA--DTRQVLVVTHLAQ 357 (415)
T ss_dssp HHHHHHHHHHHHCCSSSEEEESSTTTTCC------------HHHHHHHHHHHHHHT--TTSEEEEECSCHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCCCCC------------HHHHHHHHHHHHHHh--CCCEEEEEeCcHH
Confidence 34556666776778 8999999996543 333444555555543 2567888999764
No 380
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.84 E-value=0.0006 Score=68.38 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=28.8
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
++.++|+|||||||||+|+.||..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45699999999999999999999999988754
No 381
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.83 E-value=0.0014 Score=68.49 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=41.6
Q ss_pred ceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCC-------cccccccch-----HHHHHHHHHHHHh----CCCeEE
Q 002169 683 ILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPE-------LFSKWVGES-----EKAVRSLFAKARA----NAPSII 743 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~-------l~~~~vg~~-----~~~ir~~f~~A~~----~~p~IL 743 (957)
++++||+|+||||++..++..+ +...+.++... +.+. .|.. ......+++.+.. ..+.+|
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 7788999999999888887654 55555553221 2111 1110 0112345555554 357899
Q ss_pred EEeCCchh
Q 002169 744 FFDEIDGL 751 (957)
Q Consensus 744 fiDEid~l 751 (957)
+|||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999854
No 382
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.83 E-value=0.00019 Score=72.86 Aligned_cols=30 Identities=13% Similarity=-0.023 Sum_probs=21.3
Q ss_pred cceeeCCCCChhhHHHHHHHHHh---CCcEEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEA---GLNFLAV 711 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v 711 (957)
-++++||+|+||||++..++..+ +...+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 37899999999999986555442 5544433
No 383
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.82 E-value=0.00081 Score=66.52 Aligned_cols=30 Identities=27% Similarity=0.660 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
+..|+|+|||||||||+++.+|+.++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 467999999999999999999999987554
No 384
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.82 E-value=0.00073 Score=67.21 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=29.3
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
.-++|.|+||+||||+|++|+..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 458999999999999999999999988887654
No 385
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.80 E-value=0.0006 Score=68.73 Aligned_cols=35 Identities=34% Similarity=0.575 Sum_probs=28.9
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHH-cCCcEEE
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHD-SGVNLFT 359 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~-l~~~~i~ 359 (957)
....+..|+|+|+|||||||+++.++.. +|.+++.
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 3445678999999999999999999998 6766553
No 386
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.78 E-value=0.00095 Score=80.05 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=26.7
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
+.+.+++.+.|.||+|+|||||++++++.+
T Consensus 377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346789999999999999999999999865
No 387
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.77 E-value=0.00048 Score=69.36 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=32.9
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
+.++.-++|.||||+||||++++|++..+.+.+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4445568999999999999999999988778888876543
No 388
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.77 E-value=0.00076 Score=67.43 Aligned_cols=35 Identities=37% Similarity=0.609 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+..+..|+|+|+||+||||+++.++..++..++..
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 34567899999999999999999999998876543
No 389
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.77 E-value=0.0028 Score=69.41 Aligned_cols=74 Identities=19% Similarity=0.169 Sum_probs=46.6
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccccccc-------c-------------cchhHHHHHHHH
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVSQ-------N-------------YGESEQALHEVF 381 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~~-------~-------------~ge~e~~i~~vf 381 (957)
...+++.++|+||+|+||||++..+|..+ +..+..+++...... | .++....+...+
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 34567889999999999999999999765 445555543211100 0 012222223345
Q ss_pred HHHhccCCeEEEEcCcc
Q 002169 382 DSASQSAPAVVFIDELD 398 (957)
Q Consensus 382 ~~a~~~~p~IL~IDEiD 398 (957)
..+....|.+++||+.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 55566778899999863
No 390
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.74 E-value=0.0029 Score=78.14 Aligned_cols=106 Identities=15% Similarity=0.070 Sum_probs=54.7
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh-----CCc----EE----------EEeCCCcccccccchHHHHHHHH-HHHHhCCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA-----GLN----FL----------AVKGPELFSKWVGESEKAVRSLF-AKARANAP 740 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~-----~~~----~i----------~v~~~~l~~~~vg~~~~~ir~~f-~~A~~~~p 740 (957)
.-++|.||+|+||||+.|+++... |.. .. .+...+.+...........+.+. .......|
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~p 687 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEY 687 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTT
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCC
Confidence 448999999999999999998642 211 01 11111111110011111111111 11235689
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
++|++||+.+..+. .....+..+++..+. ...+..+|++||+.+..
T Consensus 688 sLlLLDEp~~Gtd~--------~d~~~i~~~ll~~l~---~~~g~~vl~~TH~~el~ 733 (800)
T 1wb9_A 688 SLVLMDEIGRGTST--------YDGLSLAWACAENLA---NKIKALTLFATHYFELT 733 (800)
T ss_dssp EEEEEESCCCCSSS--------SHHHHHHHHHHHHHH---HTTCCEEEEECSCGGGG
T ss_pred CEEEEECCCCCCCh--------hHHHHHHHHHHHHHH---hccCCeEEEEeCCHHHH
Confidence 99999999754321 112222234444443 22367899999988654
No 391
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.74 E-value=0.0019 Score=78.54 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhCCCe--EEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCC
Q 002169 727 AVRSLFAKARANAPS--IIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDK 796 (957)
Q Consensus 727 ~ir~~f~~A~~~~p~--ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~ 796 (957)
..|..+++|....|. +|++||+.+.++.. ....+-+++..+. .. +..||++||+.+.
T Consensus 208 ~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~---------~~~~l~~~l~~l~---~~-g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 208 AQRIRLATQIGSRLTGVLYVLDEPSIGLHQR---------DNDRLIATLKSMR---DL-GNTLIVVEHDEDT 266 (670)
T ss_dssp HHHHHHHHHHHTCCCSCEEEEECTTTTCCGG---------GHHHHHHHHHHHH---HT-TCEEEEECCCHHH
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCccCCCHH---------HHHHHHHHHHHHH---Hc-CCEEEEEeCCHHH
Confidence 347778888888888 99999999765432 2222333444442 22 6789999998653
No 392
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.71 E-value=0.007 Score=63.21 Aligned_cols=110 Identities=23% Similarity=0.236 Sum_probs=63.1
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHH----cCCcEEEEeccccccc-------------------------c------
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHD----SGVNLFTVNGPEVVSQ-------------------------N------ 369 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~----l~~~~i~i~~~~l~~~-------------------------~------ 369 (957)
|++++.-++|+|+||+|||++|..+|.. .+..++.++...-... +
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 105 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhh
Confidence 6888999999999999999999876532 3556655553210000 0
Q ss_pred -----------cchhHHHHHHHHHHHhccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEec
Q 002169 370 -----------YGESEQALHEVFDSASQSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAAT 438 (957)
Q Consensus 370 -----------~ge~e~~i~~vf~~a~~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~tt 438 (957)
.......+..+...+....+.++++|.+..+...... .....+....|..+.. ..++.+++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~--~~~~~~~~~~L~~~a~----~~~i~vi~~~ 179 (251)
T 2zts_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE--ERKIREVLLKLNTILL----EMGVTTILTT 179 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS--GGGHHHHHHHHHHHHH----HHCCEEEEEE
T ss_pred cccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccC--hHHHHHHHHHHHHHHH----HcCCCeEEEE
Confidence 0011122333444455667889999998877543221 1223344444444443 3466777776
Q ss_pred CC
Q 002169 439 NR 440 (957)
Q Consensus 439 N~ 440 (957)
..
T Consensus 180 q~ 181 (251)
T 2zts_A 180 EA 181 (251)
T ss_dssp CC
T ss_pred EE
Confidence 43
No 393
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.69 E-value=0.0028 Score=73.45 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=65.1
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCCCc----ccc----------------------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPEL----FSK---------------------------- 719 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~~l----~~~---------------------------- 719 (957)
|+.+..-+++.|+||+|||+++..+|... +.+.+.++...- ..+
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~ 278 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTM 278 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHH
Confidence 56666779999999999999999998653 446666554211 000
Q ss_pred ----------cc----cchHHHHHHHHHHH-HhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCc
Q 002169 720 ----------WV----GESEKAVRSLFAKA-RANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVN 784 (957)
Q Consensus 720 ----------~v----g~~~~~ir~~f~~A-~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~ 784 (957)
|+ +-+...++..+... +...|.+|+||++..+...... .......+..++..|..+....+
T Consensus 279 a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~----~~~~~~~i~~i~~~Lk~lAke~~ 354 (454)
T 2r6a_A 279 AMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRS----KENRQQEVSEISRSLKALARELE 354 (454)
T ss_dssp HHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC--------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCC----CCCHHHHHHHHHHHHHHHHHHhC
Confidence 00 00112222222222 2357899999999987532110 01123344556666665544457
Q ss_pred EEEEEecC
Q 002169 785 VTVIAATN 792 (957)
Q Consensus 785 v~VI~aTN 792 (957)
+.||++++
T Consensus 355 i~vi~~sq 362 (454)
T 2r6a_A 355 VPVIALSQ 362 (454)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEec
Confidence 77887776
No 394
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.68 E-value=0.00099 Score=65.57 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEe
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVN 361 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~ 361 (957)
.|+|.||||+||||+++.++..++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998775443
No 395
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.67 E-value=0.011 Score=69.94 Aligned_cols=166 Identities=11% Similarity=0.133 Sum_probs=92.8
Q ss_pred CChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHH----HhCCcE---EEEeCCCcc--c-
Q 002169 649 GGQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVAS----EAGLNF---LAVKGPELF--S- 718 (957)
Q Consensus 649 ~G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~----~~~~~~---i~v~~~~l~--~- 718 (957)
+|.+..++.|.+.+... +....+.+.++|+.|+|||+||+.+++ .....| +.++.+... +
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999998888877321 112235588999999999999999996 232222 223333211 0
Q ss_pred -----c---ccc-------------chHHHHHHHHHHHHhCC-CeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHH
Q 002169 719 -----K---WVG-------------ESEKAVRSLFAKARANA-PSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVEL 776 (957)
Q Consensus 719 -----~---~vg-------------~~~~~ir~~f~~A~~~~-p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~l 776 (957)
. .++ .....+...+....... +.+|+||+++... ++ .+
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~------------------~~--~~ 260 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE------------------TI--RW 260 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH------------------HH--HH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch------------------hh--cc
Confidence 0 000 01122344455554554 8899999997431 11 11
Q ss_pred hccccCCcEEEEEecCCCCCCChhhhCCCCcceecccCCCCHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHccCCc
Q 002169 777 DGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNETDREEIFRIHLRKIPCSSD--VNIRELACLSEGCT 851 (957)
Q Consensus 777 d~~~~~~~v~VI~aTN~~~~id~aLlr~gRfd~~i~~~~P~~~er~~Il~~~l~~~~~~~~--~~l~~la~~t~g~s 851 (957)
... .+..||+||..... +.. -+.....+.++..+.++-.++|..+....+...+ ....++++.+.|..
T Consensus 261 ~~~---~gs~ilvTTR~~~v---~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 261 AQE---LRLRCLVTTRDVEI---SNA-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp HHH---TTCEEEEEESBGGG---GGG-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ccc---CCCEEEEEcCCHHH---HHH-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 111 35568888865432 111 1112356888999999988888877433221111 12455667777643
No 396
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.67 E-value=0.0099 Score=70.06 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=52.5
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCC--CCChhhhCCCCcceecccCCCCH
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPD--KIDPALLRPGRFDRLLYVGPPNE 818 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~--~id~aLlr~gRfd~~i~~~~P~~ 818 (957)
-+|+|||++.+.... ...+ ...+..+-......++.+|++|.+|. .++..++. -|...|-+...+.
T Consensus 345 ivvVIDE~~~L~~~~---------~~~~-~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~ 412 (574)
T 2iut_A 345 IVVVVDEFADMMMIV---------GKKV-EELIARIAQKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSK 412 (574)
T ss_dssp EEEEESCCTTHHHHT---------CHHH-HHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCH
T ss_pred EEEEEeCHHHHhhhh---------hHHH-HHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCH
Confidence 589999999886532 1122 22333333334456899999999998 78888877 7777888888888
Q ss_pred HHHHHHHH
Q 002169 819 TDREEIFR 826 (957)
Q Consensus 819 ~er~~Il~ 826 (957)
.+...|+.
T Consensus 413 ~Dsr~ILd 420 (574)
T 2iut_A 413 IDSRTILD 420 (574)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88777764
No 397
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.65 E-value=0.0035 Score=78.43 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHH
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCA 350 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA 350 (957)
..++.++|+||+|+||||+.|.+|
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346779999999999999999985
No 398
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.65 E-value=0.0015 Score=85.15 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 728 VRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 728 ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
.|..+++|....|.||++||+.+-++.. .++.+.+.+..+. .+.++|.+||+.+.+
T Consensus 533 QriaiARal~~~p~iliLDEpts~LD~~---------~~~~i~~~l~~~~-----~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 533 QRIAIARALVRNPKILLLDEATSALDTE---------SEAVVQAALDKAR-----EGRTTIVIAHRLSTV 588 (1284)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTCSSCHH---------HHHHHHHHHHHHH-----TTSEEEEECSCHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHH---------HHHHHHHHHHHHc-----CCCEEEEEecCHHHH
Confidence 3667788888899999999999765432 2333333443332 256788999987543
No 399
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.63 E-value=0.0023 Score=70.40 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=30.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEeccc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPE 364 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~ 364 (957)
..|+|+||+||||||+++.+|..++..++.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 46899999999999999999999998888777543
No 400
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.63 E-value=0.0012 Score=65.36 Aligned_cols=30 Identities=27% Similarity=0.612 Sum_probs=26.5
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
..+.|.||||+||||++++||..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 458999999999999999999999876653
No 401
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.62 E-value=0.0033 Score=67.11 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=30.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHH---cCCcEEEEecccc
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHD---SGVNLFTVNGPEV 365 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~---l~~~~i~i~~~~l 365 (957)
+..|+|.|+||+||||+|+.++.. .|..++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 456899999999999999999987 6887776665444
No 402
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.61 E-value=0.001 Score=66.91 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=28.5
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
..+.-++|.|+||+||||+++.|+..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 345568999999999999999999999887765
No 403
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.61 E-value=0.00045 Score=89.96 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=29.3
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHcCC
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDSGV 355 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l~~ 355 (957)
++.+++++.+.|+||+|+|||||++++++....
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~ 442 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 467889999999999999999999999987643
No 404
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.60 E-value=0.0013 Score=65.47 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
.|+|.|||||||||+++.||..++..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987654
No 405
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.59 E-value=0.0015 Score=81.62 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=37.3
Q ss_pred HHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 729 RSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 729 r~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
|..+.+|....|.||++||+.+.++. .....+...|.. .+..||++||+.+.+
T Consensus 556 RvaLArAL~~~P~lLLLDEPTs~LD~------------~~~~~l~~~L~~----~g~tvIivSHdl~~l 608 (986)
T 2iw3_A 556 KLALARAVLRNADILLLDEPTNHLDT------------VNVAWLVNYLNT----CGITSITISHDSVFL 608 (986)
T ss_dssp HHHHHHHHHTTCSEEEEESTTTTCCH------------HHHHHHHHHHHH----SCSEEEEECSCHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCH------------HHHHHHHHHHHh----CCCEEEEEECCHHHH
Confidence 67788888899999999999866533 223344444443 266889999987654
No 406
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.59 E-value=0.0092 Score=65.57 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=31.5
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEec
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 362 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~ 362 (957)
.|+.++.-++|.|+||+|||+++..+|... +.+++.++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 478999999999999999999999888543 445655553
No 407
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.57 E-value=0.0015 Score=66.62 Aligned_cols=37 Identities=30% Similarity=0.550 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 365 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l 365 (957)
.++..++|.||+|+||||+++++++.+|.. .+++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence 457789999999999999999999998764 4555444
No 408
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.56 E-value=0.0012 Score=64.95 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=26.7
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
-++|.||||+||||+++.|+..++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 378999999999999999999999887653
No 409
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.54 E-value=0.0012 Score=65.68 Aligned_cols=29 Identities=38% Similarity=0.580 Sum_probs=26.7
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.++|.||||+||||+|++||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999988765
No 410
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.54 E-value=0.0067 Score=69.97 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=31.5
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEec
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNG 362 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~ 362 (957)
.|+.++.-++|.|+||+|||++|..+|... +.+++.++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 478899999999999999999999887543 556666654
No 411
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.54 E-value=0.0016 Score=64.22 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
-..|+|.|+|||||||+++.||..+|.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 35789999999999999999999999987653
No 412
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.53 E-value=0.014 Score=68.85 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=51.6
Q ss_pred eEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCCC--CchhhhhCCCCcceeeeecCCCHHH
Q 002169 390 AVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRPD--SIEPALRRPGRLDREIEIAVPSPAQ 467 (957)
Q Consensus 390 ~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~~--~ld~al~r~gRfd~~I~i~~P~~~~ 467 (957)
-+|+|||++.+..... ..+...|..++ ...+.-++.+|++|.+|. .++..++. -|...|.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~~-------~~~~~~L~~Ia-r~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-------KKVEELIARIA-QKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC-------HHHHHHHHHHH-HHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh-------HHHHHHHHHHH-HHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 4899999988764221 12222232222 333567899999999987 78888877 677788899999888
Q ss_pred HHHHHH
Q 002169 468 RLEILH 473 (957)
Q Consensus 468 r~~Il~ 473 (957)
...|+.
T Consensus 415 sr~ILd 420 (574)
T 2iut_A 415 SRTILD 420 (574)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 877774
No 413
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.53 E-value=0.0012 Score=66.23 Aligned_cols=31 Identities=35% Similarity=0.606 Sum_probs=27.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
..|+|.|+||+||||+++.|+..+|..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3589999999999999999999999887643
No 414
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.52 E-value=0.0017 Score=64.87 Aligned_cols=34 Identities=35% Similarity=0.643 Sum_probs=29.2
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
..+..|+|.|+||+||||+++++|..++.+++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3455699999999999999999999999887653
No 415
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.51 E-value=0.011 Score=68.56 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=34.2
Q ss_pred cCCccccccC-ChHHHHHHHHHHHhchhhcHHHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHHh
Q 002169 640 VPKVKWEDVG-GQREVKTQLMEAVEWPQKHQEAFKRIGTRPPTGILMFGPPGCSKTLMARAVASEA 704 (957)
Q Consensus 640 ~p~v~~~di~-G~~~vk~~l~e~i~~~~~~~~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~~ 704 (957)
..+.+|+++- +|.++...+...+.. ....++|.|+||||||+++++++..+
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3455666664 566666655555431 12379999999999999999998765
No 416
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.51 E-value=0.0017 Score=64.52 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=29.0
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccc
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEV 365 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l 365 (957)
++..++|.||||+||||+++.+++.+|..+ +++.++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 456789999999999999999999887654 444444
No 417
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.50 E-value=0.0013 Score=65.79 Aligned_cols=30 Identities=33% Similarity=0.610 Sum_probs=26.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
+..|+|.|+|||||||+++.++..++..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 457899999999999999999999987554
No 418
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.50 E-value=0.0027 Score=75.68 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=25.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i 360 (957)
...++|.||||||||+++++++..+ +..++.+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4678999999999999999998754 5555444
No 419
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.48 E-value=0.0026 Score=67.61 Aligned_cols=39 Identities=28% Similarity=0.441 Sum_probs=32.1
Q ss_pred CCCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 678 RPPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 678 ~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
..+..++|.||||+||||+|+.|+..++..++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 344568999999999999999999999876777776554
No 420
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.48 E-value=0.0088 Score=65.51 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=45.1
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc-------cc-------------ccchHHHHHHHHHHH
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS-------KW-------------VGESEKAVRSLFAKA 735 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~-------~~-------------vg~~~~~ir~~f~~A 735 (957)
++.-++|.||+|+||||+++.||..+ +.....+.+..... .| .++........+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 44558999999999999999999765 44444333321110 01 011112223456667
Q ss_pred HhCCCeEEEEeCCch
Q 002169 736 RANAPSIIFFDEIDG 750 (957)
Q Consensus 736 ~~~~p~ILfiDEid~ 750 (957)
....|.++++|++..
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 778899999999863
No 421
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.47 E-value=0.0035 Score=68.05 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=29.3
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCC
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPE 715 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~ 715 (957)
+.-++|.||||+||||+|+.++.+++..++.|++..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~ 68 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH
Confidence 445899999999999999999998865566776533
No 422
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.46 E-value=0.0018 Score=66.05 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEV 365 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l 365 (957)
..++..|.|.||+||||||+++++++.+ |...+.+++.++
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3567889999999999999999999988 554445654433
No 423
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.46 E-value=0.0068 Score=76.78 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=56.3
Q ss_pred CcceeeCCCCChhhHHHHHHHHH-----hCC----cEEEEeC----------CCcccccccchHHHH-HHHHHHHHhCCC
Q 002169 681 TGILMFGPPGCSKTLMARAVASE-----AGL----NFLAVKG----------PELFSKWVGESEKAV-RSLFAKARANAP 740 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~-----~~~----~~i~v~~----------~~l~~~~vg~~~~~i-r~~f~~A~~~~p 740 (957)
.-++|.||+|+||||+.|.++-. .+. ....+.. .+............+ +..+..+....|
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~ 869 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAH 869 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTT
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCC
Confidence 45899999999999999999421 231 1111111 111100000111111 233445556789
Q ss_pred eEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCC
Q 002169 741 SIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKI 797 (957)
Q Consensus 741 ~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~i 797 (957)
++|+|||+.+..+.. ....++-+++..+. ...+..+|++||+.+.+
T Consensus 870 sLlLLDEp~~Gtd~~--------dg~~~~~~il~~L~---~~~g~~vl~~TH~~el~ 915 (1022)
T 2o8b_B 870 SLVLVDELGRGTATF--------DGTAIANAVVKELA---ETIKCRTLFSTHYHSLV 915 (1022)
T ss_dssp CEEEEECTTTTSCHH--------HHHHHHHHHHHHHH---HTSCCEEEEECCCHHHH
T ss_pred cEEEEECCCCCCChH--------HHHHHHHHHHHHHH---hcCCCEEEEEeCCHHHH
Confidence 999999998653221 11222334444443 23367899999987653
No 424
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.45 E-value=0.0015 Score=65.70 Aligned_cols=31 Identities=42% Similarity=0.650 Sum_probs=27.0
Q ss_pred CCcceeeCCCCChhhHHHHHHHHH-hCCcEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASE-AGLNFLA 710 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~-~~~~~i~ 710 (957)
+..++|+|+|||||||+++.||.. ++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 445999999999999999999999 6877765
No 425
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.44 E-value=0.002 Score=64.94 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.+..|+|.|+|||||||+++.+|..++..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456799999999999999999999998876543
No 426
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.44 E-value=0.0022 Score=65.34 Aligned_cols=33 Identities=36% Similarity=0.531 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.+..|+|.|+||+||||+|+.|+..++..++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 355789999999999999999999999876544
No 427
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.43 E-value=0.0021 Score=66.53 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.+..|+|.|+||+||||+++.||..++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 356799999999999999999999999766543
No 428
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.41 E-value=0.016 Score=66.50 Aligned_cols=71 Identities=17% Similarity=0.146 Sum_probs=48.7
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccc-------------------ccc-chhHHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVS-------------------QNY-GESEQALHEVFDSA 384 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~-------------------~~~-ge~e~~i~~vf~~a 384 (957)
++..|+++|++|+||||++..+|..+ |..+..+++..... ... .+....++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46778899999999999999999765 56666666532111 011 22344556677777
Q ss_pred hccCCeEEEEcCcc
Q 002169 385 SQSAPAVVFIDELD 398 (957)
Q Consensus 385 ~~~~p~IL~IDEiD 398 (957)
....+++++||...
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77668899999863
No 429
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.41 E-value=0.002 Score=64.36 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEeccc
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPE 364 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~ 364 (957)
.++..|.|.|++|+||||+++.++..+ |.+++.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 356788999999999999999999987 88888777533
No 430
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.40 E-value=0.0081 Score=68.31 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=25.3
Q ss_pred cCCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 324 LGLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 324 l~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
+.+.++ .+.|+||+|+|||||+++|+..++
T Consensus 56 l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 56 LELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 556677 888999999999999999976554
No 431
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.39 E-value=0.0021 Score=64.54 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=26.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
+..|+|.|+||+||||+++.++..++..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4578999999999999999999999876543
No 432
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.37 E-value=0.002 Score=64.48 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=27.2
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
.|+|.|+||+||||+|+.||..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999999999999987653
No 433
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.37 E-value=0.012 Score=72.65 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHH
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHD 352 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~ 352 (957)
.+++.++|+||+|+||||+.|.++..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 35677899999999999999999864
No 434
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.36 E-value=0.0024 Score=65.08 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
+..|+|.|+||+||||+++.|++.+|..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999876553
No 435
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.36 E-value=0.0019 Score=63.66 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=28.1
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
..++|.|+|||||||+++.||..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4689999999999999999999999988753
No 436
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.36 E-value=0.0019 Score=64.64 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
+..|+|.|+||+||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999887
No 437
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.35 E-value=0.0023 Score=63.13 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=26.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
..|+|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999987654
No 438
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.34 E-value=0.0018 Score=64.61 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
+..|+|.|+||+||||+++.++..++..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 457899999999999999999999998766
No 439
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.34 E-value=0.0017 Score=69.18 Aligned_cols=37 Identities=27% Similarity=0.551 Sum_probs=31.3
Q ss_pred cCCCC---CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 324 LGLRP---TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 324 l~i~~---~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+.+.+ ++.|.|.|++|+||||+++.+|+.++..++..
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 34455 78899999999999999999999999877653
No 440
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.32 E-value=0.002 Score=68.57 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEEec
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTVNG 362 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i~~ 362 (957)
-++|.|||||||||+|+.||..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988776654
No 441
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.32 E-value=0.0018 Score=69.00 Aligned_cols=32 Identities=34% Similarity=0.460 Sum_probs=28.1
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
-++|.||||+||||+|+.||..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 37899999999999999999999988876554
No 442
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.32 E-value=0.0023 Score=66.53 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=28.0
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
..+..|+|.|+||+||||+++.||..++..++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3456799999999999999999999998766543
No 443
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.31 E-value=0.01 Score=61.98 Aligned_cols=110 Identities=22% Similarity=0.183 Sum_probs=62.0
Q ss_pred CCCCCCcceeeCCCCChhhHHHHHHHHH----hCCcEEEEeCCCcccc--------------------------------
Q 002169 676 GTRPPTGILMFGPPGCSKTLMARAVASE----AGLNFLAVKGPELFSK-------------------------------- 719 (957)
Q Consensus 676 ~~~~~~giLL~GPpGtGKTtlAkaiA~~----~~~~~i~v~~~~l~~~-------------------------------- 719 (957)
|+++..-++++|+||+|||++|-.+|.. .+.+.+.++...-...
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 105 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhh
Confidence 4566666999999999999999877543 2555555543221000
Q ss_pred ------cc----cchHHHHHHHHHHHHhCCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEE
Q 002169 720 ------WV----GESEKAVRSLFAKARANAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIA 789 (957)
Q Consensus 720 ------~v----g~~~~~ir~~f~~A~~~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~ 789 (957)
+. ......+..+...+....+.++++|.+..+...... .....+.+..|..... ..++.+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~~~----~~~~~~~~~~L~~~a~----~~~i~vi~ 177 (251)
T 2zts_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEE----ERKIREVLLKLNTILL----EMGVTTIL 177 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSS----GGGHHHHHHHHHHHHH----HHCCEEEE
T ss_pred cccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhccC----hHHHHHHHHHHHHHHH----HcCCCeEE
Confidence 00 001112234445556677889999999877543211 1223334444443333 34677777
Q ss_pred ecCC
Q 002169 790 ATNR 793 (957)
Q Consensus 790 aTN~ 793 (957)
+++.
T Consensus 178 ~~q~ 181 (251)
T 2zts_A 178 TTEA 181 (251)
T ss_dssp EECC
T ss_pred EEEE
Confidence 7654
No 444
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.30 E-value=0.0022 Score=65.36 Aligned_cols=36 Identities=33% Similarity=0.639 Sum_probs=28.4
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEEeCCCc
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAVKGPEL 716 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~~~l 716 (957)
++.-++|.||||+||||++++|++.+|..+ +++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 455689999999999999999999997644 444443
No 445
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.29 E-value=0.0024 Score=62.56 Aligned_cols=29 Identities=31% Similarity=0.716 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.|+|.||||+||||+++.+ ..+|..++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8888876653
No 446
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.26 E-value=0.0027 Score=64.12 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=27.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
+..|+|.|+||+||||+++.++..++..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 5679999999999999999999999876544
No 447
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.24 E-value=0.0025 Score=65.95 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=28.0
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
+..|+|.|+||+||||+|+.||..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45689999999999999999999999877653
No 448
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.24 E-value=0.016 Score=60.37 Aligned_cols=33 Identities=33% Similarity=0.393 Sum_probs=25.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEec
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNG 362 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~ 362 (957)
-.|++.|+||+||||++-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 358899999999999998888664 666554443
No 449
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.23 E-value=0.002 Score=63.81 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=22.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHH-HcCC
Q 002169 330 KGVLLHGPPGTGKTSLARLCAH-DSGV 355 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~-~l~~ 355 (957)
..|+|.|+||+||||+|+.++. .++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 4688999999999999999998 4554
No 450
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.23 E-value=0.0025 Score=62.93 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=28.5
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.++..+.|.||+|+|||||++++++.+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678889999999999999999999999987
No 451
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.23 E-value=0.0027 Score=64.58 Aligned_cols=31 Identities=29% Similarity=0.577 Sum_probs=27.5
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
..|+|.|+||+||||+|+.|+..++.+++..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3589999999999999999999999887654
No 452
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.22 E-value=0.0032 Score=63.02 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=27.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+..|+|.|+|||||||+++.++..++..++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 45789999999999999999999998765543
No 453
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.22 E-value=0.02 Score=58.25 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=60.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEe---cc------ccccccc-------------c----hhHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVN---GP------EVVSQNY-------------G----ESEQALHE 379 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~---~~------~l~~~~~-------------g----e~e~~i~~ 379 (957)
...|++|+++|.||||+|-.+|-.. |..+..+. +. .++.... . +.......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 3468899999999999999988554 66666662 21 1222210 0 11233444
Q ss_pred HHHHHh----ccCCeEEEEcCccccccCCcCCCchHHHHHHHHHHHHhhccccCCCeEEEEecCCC
Q 002169 380 VFDSAS----QSAPAVVFIDELDAIAPARKDGGEELSQRMVATLLNLMDGVCRTDGVLVIAATNRP 441 (957)
Q Consensus 380 vf~~a~----~~~p~IL~IDEiD~l~~~~~~~~~~~~~~i~~~Ll~~ld~l~~~~~v~vI~ttN~~ 441 (957)
.++.+. ....++|++||+-....-+--. ...+++++.. +..+.-||+|+|.+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~--------~~ev~~~l~~--Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLP--------LEEVISALNA--RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC--------HHHHHHHHHT--SCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCC--------HHHHHHHHHh--CcCCCEEEEECCCC
Confidence 444443 3457899999985432221111 1236666654 44567888898764
No 454
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.21 E-value=0.0057 Score=62.00 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=23.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcE
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNL 357 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~ 357 (957)
+.|+|.||+|+|||||++.|.......+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 5699999999999999999988875443
No 455
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.21 E-value=0.0033 Score=65.73 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+..|+|.|+|||||||+++.||..++..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 46799999999999999999999999766543
No 456
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.20 E-value=0.0099 Score=64.79 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=28.6
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHc----CCcEEEEec
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDS----GVNLFTVNG 362 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l----~~~~i~i~~ 362 (957)
.+++.++|+||+|+||||++..+|..+ |..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 357789999999999999999999654 556666654
No 457
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.20 E-value=0.021 Score=65.44 Aligned_cols=71 Identities=17% Similarity=0.108 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc---CCcEEEEecccccc-------------------ccc-chhHHHHHHHHHHH
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS---GVNLFTVNGPEVVS-------------------QNY-GESEQALHEVFDSA 384 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l---~~~~i~i~~~~l~~-------------------~~~-ge~e~~i~~vf~~a 384 (957)
++..++++||+|+||||++..+|..+ |..+..+++..... ... .+........++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46778889999999999999999765 66666555431100 000 11222334556666
Q ss_pred hccCCeEEEEcCcc
Q 002169 385 SQSAPAVVFIDELD 398 (957)
Q Consensus 385 ~~~~p~IL~IDEiD 398 (957)
....+.+++||...
T Consensus 176 ~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 176 VKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTCSEEEEEECC
T ss_pred HhcCCCEEEEECCC
Confidence 65678899999864
No 458
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.20 E-value=0.0096 Score=68.22 Aligned_cols=72 Identities=19% Similarity=0.122 Sum_probs=45.2
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeCCCccc----------------cc---cc-chHHHHHHHHHHHH
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEA---GLNFLAVKGPELFS----------------KW---VG-ESEKAVRSLFAKAR 736 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~~~l~~----------------~~---vg-~~~~~ir~~f~~A~ 736 (957)
+.-+++.||+|+||||++..||..+ +.....+.+..... .+ .+ ......+..++.+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4458899999999999999998765 55554444321100 00 01 11222345566666
Q ss_pred hCCCeEEEEeCCchh
Q 002169 737 ANAPSIIFFDEIDGL 751 (957)
Q Consensus 737 ~~~p~ILfiDEid~l 751 (957)
...+.++++|++..+
T Consensus 177 ~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTCSEEEEEECCCS
T ss_pred hcCCCEEEEECCCCc
Confidence 667889999998643
No 459
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.19 E-value=0.003 Score=64.28 Aligned_cols=31 Identities=29% Similarity=0.618 Sum_probs=27.3
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
+.-++|.|+||+||||+|+.|+..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4569999999999999999999999877654
No 460
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.19 E-value=0.0027 Score=64.52 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=25.4
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcC
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSG 354 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~ 354 (957)
.+.++..+.|.||+|+|||||++++++...
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 355678899999999999999999999864
No 461
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.16 E-value=0.0027 Score=62.57 Aligned_cols=30 Identities=33% Similarity=0.651 Sum_probs=27.0
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
..|+|.|+||+||||+|+.||..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999988765
No 462
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.16 E-value=0.0025 Score=63.77 Aligned_cols=30 Identities=33% Similarity=0.652 Sum_probs=26.2
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
..++|.|+||+||||+++.||..++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 348999999999999999999999876653
No 463
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.16 E-value=0.0035 Score=65.23 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecccccc
Q 002169 325 GLRPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGPEVVS 367 (957)
Q Consensus 325 ~i~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~~l~~ 367 (957)
.+..++-|+|.||||+||+|.|+.||..++.. .|+..+++.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR 65 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLR 65 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHH
Confidence 44567788899999999999999999999874 455555544
No 464
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.15 E-value=0.0031 Score=65.19 Aligned_cols=32 Identities=22% Similarity=0.534 Sum_probs=27.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+..|+|.|+||+||||+++.||..++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 45789999999999999999999999776544
No 465
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.14 E-value=0.0025 Score=66.35 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=28.6
Q ss_pred CCCCCcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 677 TRPPTGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 677 ~~~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.+.++-|+|.||||+||+|.|+.||..++.+.++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 4455668899999999999999999999877653
No 466
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.14 E-value=0.0028 Score=63.84 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=28.4
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
.+.-|+|.|+||+||||+|+.||..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345699999999999999999999999887654
No 467
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.14 E-value=0.0033 Score=64.63 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.|+|.||||+||||+|+.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998766544
No 468
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.14 E-value=0.005 Score=65.64 Aligned_cols=65 Identities=18% Similarity=0.350 Sum_probs=41.4
Q ss_pred CcceeeCCCCChhhHHHHHHHHH---hCCcEEEEeCCCcccc---cccchHHHH----HHHHHHHHhCCCeEEEEeC
Q 002169 681 TGILMFGPPGCSKTLMARAVASE---AGLNFLAVKGPELFSK---WVGESEKAV----RSLFAKARANAPSIIFFDE 747 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~---~~~~~i~v~~~~l~~~---~vg~~~~~i----r~~f~~A~~~~p~ILfiDE 747 (957)
.-|+|.|+||+||||+|+.|+.. .|.+++.++...+... |....+..+ +..+..+... ..+++|.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~~--~~vIiD~ 79 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKN--YWVIVDD 79 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTT--SEEEECS
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhC--CEEEEeC
Confidence 45899999999999999999997 6788776655433211 222223222 2333334333 5788886
No 469
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.14 E-value=0.01 Score=62.32 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=27.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHHcCCcEEEEecc
Q 002169 330 KGVLLHGPPGTGKTSLARLCAHDSGVNLFTVNGP 363 (957)
Q Consensus 330 ~~vLL~GppGtGKTtLaralA~~l~~~~i~i~~~ 363 (957)
..++++||+|+|||.++.+++...+...+.+...
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3589999999999999999998887666655543
No 470
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.14 E-value=0.0027 Score=62.23 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=25.4
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
-++|.||||+||||+|+.| ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 3789999999999999999 8888887653
No 471
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.13 E-value=0.012 Score=72.08 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.0
Q ss_pred CCcceeeCCCCChhhHHHHHHHHH
Q 002169 680 PTGILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~ 703 (957)
..-++|.||+|+||||+.|+++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 345889999999999999999864
No 472
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.12 E-value=0.0063 Score=70.48 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHc
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l 353 (957)
.++|.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998766
No 473
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.12 E-value=0.0027 Score=63.66 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=26.7
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.-|+|.|+||+||||+|+.|+..++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 458999999999999999999999987654
No 474
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.12 E-value=0.0036 Score=61.43 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
.|+|.|+||+||||+++.++..++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999999987664
No 475
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.11 E-value=0.0037 Score=63.38 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHc-CCcEEEEe
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDS-GVNLFTVN 361 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l-~~~~i~i~ 361 (957)
.+..|+|.|++|+||||+++.++..+ |.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 46679999999999999999999998 57776654
No 476
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.11 E-value=0.0029 Score=62.74 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=25.6
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
..++|.||||+||||++++|++.+|..++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 348899999999999999999998765543
No 477
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.11 E-value=0.0038 Score=63.51 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=27.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
+..|+|.|+|||||||+++.++..++..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 45688999999999999999999998765543
No 478
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.11 E-value=0.014 Score=74.02 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 002169 329 TKGVLLHGPPGTGKTSLARLCA 350 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA 350 (957)
++.++|+||+|+||||++|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 5788999999999999999984
No 479
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.10 E-value=0.0033 Score=66.29 Aligned_cols=31 Identities=26% Similarity=0.545 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
.+..++|.||||+||||++++|+..+|...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3678999999999999999999998887543
No 480
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.10 E-value=0.004 Score=64.34 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 329 TKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 329 ~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
+..|.|.||+||||||+++.+++.+|.+++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 356899999999999999999999987654
No 481
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.09 E-value=0.0025 Score=63.55 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=22.7
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEE
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFL 709 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i 709 (957)
.-|+|.|+||+||||+|+.|+..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 45889999999999999999999999876
No 482
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.09 E-value=0.0035 Score=64.46 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.|+|.||||+||||+|+.++..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998776544
No 483
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.09 E-value=0.0023 Score=71.19 Aligned_cols=29 Identities=17% Similarity=0.442 Sum_probs=26.2
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.++|+||||+||||++++||+.++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 49999999999999999999999887744
No 484
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.09 E-value=0.0038 Score=65.89 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=28.7
Q ss_pred CCCCeEEEEcCCCChHHHHHHHHHHHcCCcEEEE
Q 002169 327 RPTKGVLLHGPPGTGKTSLARLCAHDSGVNLFTV 360 (957)
Q Consensus 327 ~~~~~vLL~GppGtGKTtLaralA~~l~~~~i~i 360 (957)
.++..|+|.||||+||||+|+.|+..++..++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3567899999999999999999999988765543
No 485
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.08 E-value=0.0029 Score=65.63 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=24.9
Q ss_pred hcCCCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 323 SLGLRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 323 ~l~i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
++.+.+++.+.|.||+|+|||||++++++..
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3567789999999999999999999999987
No 486
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.08 E-value=0.018 Score=62.68 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=42.2
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHh----CCcEEEEeCCCcccc----------------cccchHHHHHHHHHHHHhC
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEA----GLNFLAVKGPELFSK----------------WVGESEKAVRSLFAKARAN 738 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~----~~~~i~v~~~~l~~~----------------~vg~~~~~ir~~f~~A~~~ 738 (957)
.+.-++|.||+|+||||++..||..+ |..+..+........ +.......++..++.+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--c
Confidence 34568999999999999999998754 445555544321100 0111233455555544 5
Q ss_pred CCeEEEEeCC
Q 002169 739 APSIIFFDEI 748 (957)
Q Consensus 739 ~p~ILfiDEi 748 (957)
.+.+++||-+
T Consensus 182 ~~dlvIiDT~ 191 (296)
T 2px0_A 182 EYDHVFVDTA 191 (296)
T ss_dssp GSSEEEEECC
T ss_pred CCCEEEEeCC
Confidence 6789999944
No 487
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.08 E-value=0.0029 Score=65.47 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=26.9
Q ss_pred CCCeEEEEcCCCChHHHHHHHHHHHcCCcEE
Q 002169 328 PTKGVLLHGPPGTGKTSLARLCAHDSGVNLF 358 (957)
Q Consensus 328 ~~~~vLL~GppGtGKTtLaralA~~l~~~~i 358 (957)
.+..|+|.||||+||||+++.||..++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3567999999999999999999999987543
No 488
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.05 E-value=0.0036 Score=65.46 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=28.0
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
+..|+|.|+||+||||+|+.||..++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 34599999999999999999999999877654
No 489
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.03 E-value=0.0033 Score=64.87 Aligned_cols=28 Identities=32% Similarity=0.708 Sum_probs=25.5
Q ss_pred ceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 683 ILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 683 iLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
++|.||||+||+|.|+.||..++.+.++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 7899999999999999999999887654
No 490
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.03 E-value=0.0034 Score=62.83 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=27.6
Q ss_pred CCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 680 PTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 680 ~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
+.-|+|.|+||+||||+|+.|+..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 34589999999999999999999999776653
No 491
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.03 E-value=0.0029 Score=65.76 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=28.1
Q ss_pred CCCcceeeCCCCChhhHHHHHHHHHhCCcEEEE
Q 002169 679 PPTGILMFGPPGCSKTLMARAVASEAGLNFLAV 711 (957)
Q Consensus 679 ~~~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v 711 (957)
.+..|+|.|+||+||||+|+.||..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 345699999999999999999999998877653
No 492
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.02 E-value=0.003 Score=64.14 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=25.0
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHc
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDS 353 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l 353 (957)
+.++..+.|.||+|+||||+++.+++.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678889999999999999999999876
No 493
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.02 E-value=0.017 Score=58.91 Aligned_cols=108 Identities=21% Similarity=0.253 Sum_probs=63.4
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh---CCcEEEE---eCC------Cccccc-----------c--cc----hHHHHHHH
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA---GLNFLAV---KGP------ELFSKW-----------V--GE----SEKAVRSL 731 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v---~~~------~l~~~~-----------v--g~----~~~~ir~~ 731 (957)
..+++|+++|.||||+|-++|-.. |.....+ ++. .++... . .+ .....+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 348999999999999999997654 6665555 321 122221 0 00 12334555
Q ss_pred HHHHHh----CCCeEEEEeCCchhhhhcCCCCCCCcchHHHHHHHHHHHhccccCCcEEEEEecCCCCCCChhhhC
Q 002169 732 FAKARA----NAPSIIFFDEIDGLAAIRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLR 803 (957)
Q Consensus 732 f~~A~~----~~p~ILfiDEid~l~~~r~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~VI~aTN~~~~id~aLlr 803 (957)
+..++. ....+|+|||+......+--. .+.++..+... ..+.-||+|+|.+ ++.|+.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~----------~~ev~~~l~~R--p~~~~vIlTGr~a---p~~l~e 169 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLP----------LEEVISALNAR--PGHQTVIITGRGC---HRDILD 169 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSC----------HHHHHHHHHTS--CTTCEEEEECSSC---CHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCC----------HHHHHHHHHhC--cCCCEEEEECCCC---cHHHHH
Confidence 555544 456899999997543322111 12355566533 3467788899865 446654
No 494
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.02 E-value=0.003 Score=70.28 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHcCCcEEE
Q 002169 331 GVLLHGPPGTGKTSLARLCAHDSGVNLFT 359 (957)
Q Consensus 331 ~vLL~GppGtGKTtLaralA~~l~~~~i~ 359 (957)
.++|+||||+||||+++++|+.++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 49999999999999999999998877644
No 495
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.00 E-value=0.0085 Score=62.44 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=25.4
Q ss_pred CcceeeCCCCChhhHHHHHHHHHh---CCcEEEEeC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEA---GLNFLAVKG 713 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~---~~~~i~v~~ 713 (957)
..+++.|+||||||+++-.+|..+ |...+.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 348999999999999999988764 656544444
No 496
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.99 E-value=0.0027 Score=74.60 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=49.2
Q ss_pred CCCCCeEEEEcCCCChHHHHHHHHHHHcCC--cEEEEeccc-cccc---c--------cchhHHHHHHHHHHHhccCCeE
Q 002169 326 LRPTKGVLLHGPPGTGKTSLARLCAHDSGV--NLFTVNGPE-VVSQ---N--------YGESEQALHEVFDSASQSAPAV 391 (957)
Q Consensus 326 i~~~~~vLL~GppGtGKTtLaralA~~l~~--~~i~i~~~~-l~~~---~--------~ge~e~~i~~vf~~a~~~~p~I 391 (957)
+..+..++|.||+|+||||+++++++.+.. ..+.+.+.. +... + .+.....+...+..+....|++
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ 336 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDY 336 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSE
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCe
Confidence 455778999999999999999999988743 456665543 2110 0 0111123445666777788999
Q ss_pred EEEcCc
Q 002169 392 VFIDEL 397 (957)
Q Consensus 392 L~IDEi 397 (957)
++++|+
T Consensus 337 iivgEi 342 (511)
T 2oap_1 337 IIVGEV 342 (511)
T ss_dssp EEESCC
T ss_pred EEeCCc
Confidence 999997
No 497
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.97 E-value=0.011 Score=65.17 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=29.8
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhCCcEEEEeC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAGLNFLAVKG 713 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~~~~i~v~~ 713 (957)
+.++|.||+|+|||++|+.||..++..++..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 358999999999999999999999988888764
No 498
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.97 E-value=0.003 Score=63.22 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=22.9
Q ss_pred CcceeeCCCCChhhHHHHHHHHHhC
Q 002169 681 TGILMFGPPGCSKTLMARAVASEAG 705 (957)
Q Consensus 681 ~giLL~GPpGtGKTtlAkaiA~~~~ 705 (957)
.-++|.||||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999887
No 499
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.97 E-value=0.015 Score=71.74 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=37.3
Q ss_pred CCccccccCChHHHHHHHHHHHhchhhcH-HHHHhcCCCCCCcceeeCCCCChhhHHHHHHHHH
Q 002169 641 PKVKWEDVGGQREVKTQLMEAVEWPQKHQ-EAFKRIGTRPPTGILMFGPPGCSKTLMARAVASE 703 (957)
Q Consensus 641 p~v~~~di~G~~~vk~~l~e~i~~~~~~~-~~~~~l~~~~~~giLL~GPpGtGKTtlAkaiA~~ 703 (957)
+...|+++.-.+...+.+.+.-..|.... +.+.. .+.....+++.||+|+|||+++..+...
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~-~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLK-LYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHH-HHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44567777666666666655544443221 11111 1222456999999999999987777544
No 500
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.96 E-value=0.004 Score=61.14 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=26.4
Q ss_pred cceeeCCCCChhhHHHHHHHHHhCCcEEE
Q 002169 682 GILMFGPPGCSKTLMARAVASEAGLNFLA 710 (957)
Q Consensus 682 giLL~GPpGtGKTtlAkaiA~~~~~~~i~ 710 (957)
.|+|.|+||+||||+|+.|+..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 37899999999999999999999988765
Done!