Query 002170
Match_columns 957
No_of_seqs 272 out of 1232
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 18:06:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002170.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002170hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1959 Glycosyl hydrolase, fa 100.0 2E-215 5E-220 1791.5 76.1 919 9-956 63-996 (996)
2 PLN02701 alpha-mannosidase 100.0 1E-171 3E-176 1567.4 89.9 890 7-954 53-1050(1050)
3 KOG1958 Glycosyl hydrolase, fa 100.0 2E-151 4E-156 1276.7 53.2 868 12-953 184-1128(1129)
4 PRK09819 alpha-mannosidase; Pr 100.0 5E-102 1E-106 962.6 75.4 806 7-952 17-875 (875)
5 KOG4342 Alpha-mannosidase [Car 100.0 4.6E-84 9.9E-89 702.2 41.7 740 7-953 296-1078(1078)
6 COG0383 AMS1 Alpha-mannosidase 100.0 2.5E-52 5.5E-57 509.2 30.5 696 8-952 214-942 (943)
7 PF01074 Glyco_hydro_38: Glyco 100.0 1.5E-51 3.3E-56 449.4 22.8 254 9-296 17-275 (275)
8 PF07748 Glyco_hydro_38C: Glyc 100.0 3.9E-45 8.6E-50 429.6 39.7 429 432-950 1-457 (457)
9 PF09261 Alpha-mann_mid: Alpha 99.9 2.2E-22 4.7E-27 175.2 3.2 75 301-375 1-80 (80)
10 smart00872 Alpha-mann_mid Alph 99.8 1E-20 2.2E-25 164.3 5.9 74 302-375 1-79 (79)
11 COG0383 AMS1 Alpha-mannosidase 99.5 3.2E-15 6.9E-20 184.3 -1.5 335 12-377 24-389 (943)
12 PF03065 Glyco_hydro_57: Glyco 98.2 2.9E-06 6.3E-11 96.4 9.4 123 17-141 28-197 (360)
13 COG1543 Uncharacterized conser 96.0 0.02 4.4E-07 64.3 8.5 92 45-138 115-207 (504)
14 PF01522 Polysacc_deac_1: Poly 95.9 0.097 2.1E-06 49.3 11.5 105 18-135 17-123 (123)
15 TIGR03212 uraD_N-term-dom puta 94.2 4.3 9.3E-05 44.8 19.6 112 16-141 74-187 (297)
16 COG1449 Alpha-amylase/alpha-ma 92.6 3.4 7.3E-05 50.2 16.8 98 36-135 162-263 (615)
17 TIGR02764 spore_ybaN_pdaB poly 92.4 1.6 3.5E-05 44.7 12.1 102 21-135 21-124 (191)
18 TIGR03006 pepcterm_polyde poly 92.3 1.1 2.4E-05 48.5 11.1 114 13-138 22-139 (265)
19 TIGR02884 spore_pdaA delta-lac 92.0 1.6 3.5E-05 46.0 11.8 103 21-135 52-156 (224)
20 TIGR02873 spore_ylxY probable 89.4 4 8.7E-05 44.3 12.1 101 21-134 100-202 (268)
21 PRK14582 pgaB outer membrane N 80.8 80 0.0017 38.9 18.5 184 18-262 118-347 (671)
22 PF08672 APC2: Anaphase promot 66.7 6.9 0.00015 31.9 3.3 23 53-75 36-58 (60)
23 PRK14581 hmsF outer membrane N 62.9 27 0.00058 42.9 8.7 115 18-141 118-277 (672)
24 PRK15394 4-deoxy-4-formamido-L 61.2 2.6E+02 0.0057 30.8 16.5 81 57-141 92-176 (296)
25 PF07481 DUF1521: Domain of Un 51.5 1.2E+02 0.0025 29.9 9.0 95 542-651 8-103 (171)
26 TIGR03826 YvyF flagellar opero 50.7 8.5 0.00018 37.0 1.5 49 17-72 28-76 (137)
27 PF14849 YidC_periplas: YidC p 36.0 2.6E+02 0.0056 30.1 10.5 26 544-569 2-27 (270)
28 PRK10148 hypothetical protein; 30.8 18 0.0004 35.3 0.3 17 107-123 123-139 (147)
29 TIGR03593 yidC_nterm membrane 29.9 3.4E+02 0.0074 30.8 10.6 30 541-570 73-102 (366)
30 PF12395 DUF3658: Protein of u 26.2 1.3E+02 0.0028 27.8 5.1 24 56-79 85-108 (111)
31 PF13289 SIR2_2: SIR2-like dom 26.1 3.8E+02 0.0082 25.2 8.8 85 34-133 57-141 (143)
32 PF10074 DUF2285: Uncharacteri 25.5 13 0.00028 34.2 -1.7 29 45-76 74-102 (106)
33 PF06044 DRP: Dam-replacing fa 23.8 1.1E+02 0.0025 32.2 4.5 59 17-75 185-250 (254)
34 PF01479 S4: S4 domain; Inter 22.5 75 0.0016 24.1 2.3 35 45-80 4-40 (48)
35 PF00538 Linker_histone: linke 20.9 2.2E+02 0.0047 24.3 5.1 29 44-72 27-65 (77)
No 1
>KOG1959 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-215 Score=1791.47 Aligned_cols=919 Identities=50% Similarity=0.824 Sum_probs=831.8
Q ss_pred cccccccchhhhHHhHHHHHHhCCCCeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCHHHH
Q 002170 9 RFFFFVACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDM 88 (957)
Q Consensus 9 ~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~es~ 88 (957)
++.||+++|++|+|+||++|.+||+|||+++|++||.+||++|++++|+.||+||++||||||||||||+|||++||.|+
T Consensus 63 ~n~Iq~AgVqyIldSVV~eLl~dp~RRFI~VE~aFF~rWW~~qS~~~k~~Vk~LV~~GrLEFi~Ggw~MnDEA~~hY~dv 142 (996)
T KOG1959|consen 63 KNKIQHAGVQYILDSVVEELLKDPNRRFIYVETAFFARWWNEQSETQKEQVKKLVNEGRLEFIGGGWSMNDEATTHYQDV 142 (996)
T ss_pred CcccchhhHHHHHHHHHHHHhcCCccceehhhHHHHHHHHHhcCHHHHHHHHHHHhcCCEEEecCeeeecchhhhhHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC--CCCceeeecCCCCCChhhHHHHHhhcCCcEEEEeecChHhHHhhhccCceEEEEeeCCCCCC
Q 002170 89 IDQTTLGHRYIKEQFN--VTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRASKSLGS 166 (957)
Q Consensus 89 Irql~~G~~~l~~~fG--~~p~v~W~~D~FGhS~~~p~il~~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~ 166 (957)
|+||+.||+||.++|| .+|++||||||||||+.+|+|| ++|||++++|+||||+||+.|..++.|||+|+|++++++
T Consensus 143 IDQ~TlGlrfL~~tFG~cgrPrvgWqIDPFGHSreqAslf-AqmGfd~~fFaRiDy~dK~~R~~~~~lE~iW~~S~sL~~ 221 (996)
T KOG1959|consen 143 IDQFTLGLRFLKDTFGECGRPRVGWQIDPFGHSREQASLF-AQMGFDGVFFARIDYQDKAKRMKEKTLEMIWRGSESLGS 221 (996)
T ss_pred HHHHHHHHHHHHHHhcccCCcceeeeeCCCCcchHHHHHH-HHhCccchheeecchhhHHHHHhhccceEEeecCccccc
Confidence 9999999999999999 7999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCceeEEeCCCCCCCCCCCCccccCCCCCCccCCcccccCChHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCcchhH
Q 002170 167 SAQIMTGISPKNYEPPSDNFYFEVGDTSPIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHT 246 (957)
Q Consensus 167 gs~i~th~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~ 246 (957)
.++|||++|+.||++| +|||||.+|.+.|++|++.+.++||++|++.|++..+.++.+|+|||||+|||+||+|.+|..
T Consensus 222 ~~~iFTg~l~n~Y~~P-~gfc~dv~c~d~Pi~D~~~~~d~NVkerVd~Fv~~a~~~a~~~RtnHim~~MG~DFqY~~A~v 300 (996)
T KOG1959|consen 222 SSQIFTGALYNHYSPP-PGFCFDVLCGDDPIIDGPRSYDYNVKERVDDFVAYAKNQAAYYRTNHIMWPMGDDFQYENANV 300 (996)
T ss_pred hhhhhhhccccCCCCC-CCceeccccCCCCCCCCCCCCCccHHHHHHHHHHHHHHhHhheecceEEEeccCCceehhhhH
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CC-CeEEEEcChhhHHHHHHhcCCCCCcccCCCccCCcCCCCceeeeeccchhhhHHHHHHHH
Q 002170 247 WFRQMDKFIHYVNQ---DG-RVNALYSTPSMYIDAKYAANESWPLKTDDFFPYADRENAYWTGYFTSRPALKGYVRTMSA 322 (957)
Q Consensus 247 ~~~~~~~li~~~N~---~~-~~~v~~sT~~~Yf~a~~~~~~~~p~~~gdf~py~~~~~~yWtG~yTSr~~~K~~~R~~e~ 322 (957)
||+||||||+|+|+ .+ .+++.||||+||++++|+.+..||+++.|||||++++|.||||||||||.+|++.|++++
T Consensus 301 ~fknmDkLI~yVN~~qa~gs~vnv~YSTpscYl~alh~~~~Twp~Kt~DFFPYa~~~~syWTGyFTSRPa~Kr~~R~~s~ 380 (996)
T KOG1959|consen 301 WFKNMDKLIKYVNERQADGSKVNVFYSTPSCYLNALHAANQTWPVKTDDFFPYASEPHSYWTGYFTSRPALKRFERDGSH 380 (996)
T ss_pred HHhhHHHHHHHhhhhhcCCceEEEEEcChHHHHHHHHHhcCcccccccccCcCCCCCCcceeeeccccHHHHHHHhhhhH
Confidence 99999999999994 34 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccc--CCCchHHHHHHHHhhhccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 002170 323 YYLAARQLEFFKGRNE--VGLSTDSLADALALVQHHDAVSGTEKQHVADDYAKRLSIGYTEAEKVVAASLACLTEFSKNG 400 (957)
Q Consensus 323 ~L~~aE~l~~la~~~~--~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~ 400 (957)
.|++|++|.++|++.. ..+.++.|+++|++.|||||||||+|++|.+||+++|..|+..|+++++++|+.|+...
T Consensus 381 ~lq~akQL~~la~l~~~~~~~dl~~Lream~i~QHHDAVTGTekq~Va~DY~r~La~g~~~~e~~~~~aL~~lt~~~--- 457 (996)
T KOG1959|consen 381 YLQVAKQLSVLAGLSSTEQGPDLDYLREAMAIMQHHDAVTGTEKQHVADDYARRLADGILGAEKLARDALRKLTNLP--- 457 (996)
T ss_pred HHHHHHHHhhhcCCCccccCccHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---
Confidence 9999999999998754 56789999999999999999999999999999999999999999999999999998643
Q ss_pred CCCCCccccccCCcccccCCCCccccCCCCceEEEEEcCCCceeeEEEEEEEeCCcEEEEcCCCCEEEEEEeeccccccc
Q 002170 401 CVNPITNFQQCPLLNISYCPPSEVDLSSGKSLVVVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMS 480 (957)
Q Consensus 401 ~~~~~~~~~~~~~ln~s~c~~~~~~~~~~~~~~v~v~Npl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~ 480 (957)
..+|++|++||+|+||.++. ..+++.|+|||||+|.++++|+|||+.+++.|+|+.|++|++|++|.......
T Consensus 458 ----~~~f~~C~~lNiS~C~~t~~---~~~~~~v~~YNpLa~~~t~~VRiPV~~~~~~V~D~~G~~v~Sqivp~~~~~~a 530 (996)
T KOG1959|consen 458 ----NGEFQSCLLLNISECAFTKD---GADNFIVTLYNPLAHTVTQYVRIPVKEENYRVTDEKGRTVPSQIVPVPWQVLA 530 (996)
T ss_pred ----CccchhhhhhccccCCCCcC---CcCcEEEEEEcCCcceeeeEEEEeccCCCeEEECCCCCCcccceeccchhhhh
Confidence 34799999999999999863 35778999999999999999999999999999999999999999998764433
Q ss_pred ccccccccccCCCCCCCCcEEEEEEEeeCCCceEEEEEEeCCccCCccccceeeeccccCCCceEEccCeEEEEEECCCC
Q 002170 481 LRNSYSTAYLGKSTNVTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGMRTVYKSQIRQNDTIEVGPGNLKLLYSGKRA 560 (957)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~~~i~~~~~~~~~~~~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G 560 (957)
+.. ......++|+|.|.|||+|+++|.|+....+...+ .+.+............|+|+++++.||.++|
T Consensus 531 l~~----------~~~~~~~eLvf~asvpplg~aty~i~k~~~~~~~~-~~~~~~i~~~~~n~~~V~n~~~kl~fd~~tG 599 (996)
T KOG1959|consen 531 LES----------RNNDTKHELVFKASVPPLGIATYFIKKVASTERGS-ASHVRNIKKRESNATEVGNSHLKLVFDNDTG 599 (996)
T ss_pred hhc----------cccCCCceEEEEEEecCccceEEEEeecCcccccc-cccccccccccCcceEeccceEEEEEcCCCC
Confidence 211 12345689999999999999999999655432210 0111111122333489999999999998889
Q ss_pred cEEEEEecccceeeEEEEEEEEeecCCCCCCCCCCcceEEccCCCCccCCC-CCceEEEEeCCceEEEEEEEcCeEEEEE
Q 002170 561 KLMRYINSKTSVNKLLEQSYIYYRGDDGSKDLQPSGAYIFRPNGTYPIEPE-GQLSFTILRGPLLDEVHQRINPWIYQVT 639 (957)
Q Consensus 561 ~l~si~dk~~g~~~~~~~~~~~Y~~~~g~~~~~~sgAYiF~P~~~~~~~~~-~~~~i~v~~G~l~~~v~~~~~s~i~q~i 639 (957)
.++++....+|.+..+.|+|.+|.++.|+++.+.||||+|+| +..++++. ....++|+.|||+.||++.++.|++|++
T Consensus 600 ~l~~v~~n~t~~t~~V~Q~f~~Y~~~~g~n~~q~SgAYiFRp-~~~~~~~~~~~vel~vv~G~LV~EVhQ~f~~wiSQvi 678 (996)
T KOG1959|consen 600 LLKTVEMNQTGVTENVDQEFGYYKGYRGDNDKQASGAYIFRP-GQADIPIVSDQVELTVVDGPLVKEVHQQFNPWISQVI 678 (996)
T ss_pred ceEEEEecccCcceeeeeeeEEEEeecCCcCCccCcceEecC-CCCCccccccceEEEEecCchHHHHHHHHHHHHhhee
Confidence 999999888999999999999999988875568999999999 54444443 3578999999999999999999999999
Q ss_pred EEEcCCCceeEEEEEccccccCCCCcEEEEEEEeeccCCCeEEEcCCcccceecccccccCcccccCCCcccceeeccce
Q 002170 640 RVYKGKDHAEIEFTVGPIPIDDGIGKEVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLG 719 (957)
Q Consensus 640 rLy~~~~~ie~e~~v~~i~~~~~~~~el~~~f~t~i~s~~~fytDsnG~~~ikR~~~~~~~w~~~~~~pv~~nyYP~~s~ 719 (957)
|+|+|.+++||||.|+|||++++.|||++.||+|+|+|++.|||||||+|||||.+++|++|..+.++|||||||||++.
T Consensus 679 Rvy~g~~~~E~Ew~VGpIp~~d~~gkEvVtr~~t~i~S~g~fYTDSNGRe~~kR~~d~r~~~~~~~~epiAGNYYPvt~~ 758 (996)
T KOG1959|consen 679 RVYEGKNHVEFEWLVGPIPIDDGIGKEVVTRFSTEISSNGVFYTDSNGREMIKRVRDKREDFVLDVNEPIAGNYYPVTSR 758 (996)
T ss_pred EecCCCcceEEEEEecceecCCCccceEEEEeccccccCceEEecCcHHHHHHHHhcccCCCccccCcccccccccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEeCCceEEEEecCCccccccCCCeEEEEEEeeccCcCCcCcccccccccccccccCCeEEEeEEEEEecCccchh-h
Q 002170 720 IYMKDNSSELSILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEALNETVCVFDKCEGLTIIGKYYLRIDPVGEAA-K 798 (957)
Q Consensus 720 ~~I~D~~~~ltvl~dr~~G~sS~~~G~ielml~Rr~~~dD~rGv~e~l~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 798 (957)
|||+|++.+|+|||||+|||||++||+||||||||+++||+|||||+|||+.++ ..||+++|+|++.|+...+.+ .
T Consensus 759 i~lqD~~~rl~vL~DRAqGgsSl~dG~lElMLHRRl~~DD~~Gv~EaLnEt~~~---~~gL~~rGk~~~~l~~~~d~a~~ 835 (996)
T KOG1959|consen 759 IYLQDSKKRLSVLNDRAQGGSSLKDGQLELMLHRRLLNDDGRGVGEALNETVYG---HAGLIARGKLYVLLDKAGDGATG 835 (996)
T ss_pred eEEecCCceEEEEeecccCCccccCCeEEEEeeehhhcccccccchhccccccc---ccceEEeeeEEEEEecccccchh
Confidence 999999999999999999999999999999999999999999999999999886 279999999999999887765 6
Q ss_pred hcccchhhhccCceeeeeccCCCccccccccccccCcccccCCCcceEEEeeecCCCcEEEEEeeccccccCCCCceeee
Q 002170 799 WRRSFGQEIYSPFLLAFTEQDGDHWANSHLATYSAMDTTYVLPDNVALITLQELDSGKILLRLAHLYEIEEDTDLSVMSS 878 (957)
Q Consensus 799 ~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lp~nv~l~tl~~~~~~~~llRl~~~~~~~~~~~~s~~~~ 878 (957)
++|..++++..|.+.+|++..+..+........+.+..+..||.+|||+||++|+++.+||||+|+|++|||+.+|++++
T Consensus 836 ~~r~~~~ei~~P~~~~f~~~~~~~~~~~~s~~~~~f~~~~~lP~~vhLlTLe~~~~~~vLlRleh~~e~gED~~~s~vvs 915 (996)
T KOG1959|consen 836 WRRLAEQEIHLPLWKFFSKPEGGEALNSLSIPGSAFSGSYDLPQSVHLLTLEEWSKDEVLLRLEHLYEVGEDSELSQVVS 915 (996)
T ss_pred hhhhhhhhcccHHHHHhhcCCCccchhhcCCCccccccccCCCcceeeeecccCCCCceEeeehhhhhcccccccCcceE
Confidence 77889999999999999987664443322222222222358999999999999999999999999999999999999999
Q ss_pred eeccccCCCCccceEEecccccchhhhHhhhcceeeeec-CC-C--CCCCcccCCCCCCC-CCceEEecCcceeEEEEEE
Q 002170 879 VELKKVFPKKKISKVTEMNLSANQERAVMEKKRLVWRVE-GS-S--KEQPTAVRGSPVDP-AKLVVELAPMEIRTFVIEF 953 (957)
Q Consensus 879 v~l~~lf~~~~~~~i~E~sLt~~~~~~~~~~~r~~w~~~-~~-~--~~~~~~~~~~~~~~-~~~~v~l~P~eIrTf~v~~ 953 (957)
|+|.+||..+++.+|+||+|+||+++++| +|++|..+ .+ . .....+.+..|+++ +.+.|+|.|||||||+|+.
T Consensus 916 fnl~~lf~~~~i~~i~EttL~gN~~ls~m--kr~k~~~~~~G~~~~~~~~~~s~~~p~~~~~~~~vtL~PmeIRTfii~~ 993 (996)
T KOG1959|consen 916 FNLRKLFSALDIVEIRETTLDGNQPLSDM--KRFKFHWDVSGEKPSGVEYSTSRHKPLDKTSEFIVTLHPMEIRTFIIKF 993 (996)
T ss_pred EEhHHhhcccCeeEEEEeeccCccChhhh--hhhccccCCCCCCCCCccccccCCCCCCcccceEEEEeccEEEEEEEEE
Confidence 99999999999999999999999999999 55555444 22 1 12223456667765 6789999999999999998
Q ss_pred eec
Q 002170 954 YSE 956 (957)
Q Consensus 954 ~~~ 956 (957)
+++
T Consensus 994 ~~~ 996 (996)
T KOG1959|consen 994 QQK 996 (996)
T ss_pred ecC
Confidence 764
No 2
>PLN02701 alpha-mannosidase
Probab=100.00 E-value=1.5e-171 Score=1567.45 Aligned_cols=890 Identities=27% Similarity=0.458 Sum_probs=736.9
Q ss_pred cccccccc---cchhhhHHhHHHHHHhCCCCeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCC
Q 002170 7 AFRFFFFV---ACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAP 83 (957)
Q Consensus 7 ~~~~~~~~---~~v~~il~~vl~~L~~~p~~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~ 83 (957)
.|-++++. +.|++||++||+.|++||+|||+|+|++||++||++++|+++++||+||++||||||||||||+|||++
T Consensus 53 gWl~T~~eyy~~~~~~ild~vv~~L~~dp~rkFi~~E~~fl~~Ww~~~~pe~~~~vk~LV~~GrLE~vgGgwvm~DEa~~ 132 (1050)
T PLN02701 53 GWILTVEEYYQEQSRHILDTIVESLSKDPRRKFIWEEMSYLERWWRDASPSKKEAFTKLVKNGQLEIVGGGWVMNDEANS 132 (1050)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHhCcCcceeeccHHHHHHHHHhcCHHHHHHHHHHHHcCCEEEECCceeccccccc
Confidence 56666665 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHHhhcCCcEEEEeecChHhHHhhhccCceEEEEeeCCC
Q 002170 84 HYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRASKS 163 (957)
Q Consensus 84 ~~es~Irql~~G~~~l~~~fG~~p~v~W~~D~FGhS~~~p~il~~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d~ 163 (957)
|||||||||++||+|++++||+.|++||+|||||||++||||| ++|||++++|+|++|++|..+..++.+||+|+++++
T Consensus 133 ~~esiI~Ql~~G~~~l~~~fG~~P~~~W~iDpFGhs~~~P~Ll-~~~G~~~~~~~R~~y~~k~~~~~~~~~eF~W~~s~~ 211 (1050)
T PLN02701 133 HYFAIIEQITEGNMWLNDTIGVAPKNSWAIDPFGYSSTMAYLL-RRMGFENMLIQRTHYEVKKELAQNKNLEYIWRQSWD 211 (1050)
T ss_pred CHHHHHHHHHhhhHHHHhhcCCCCCcCccCCCCCCCHHHHHHH-HhCCCceEEEeccchHHHHHHhhcCCceEEEeCCCC
Confidence 9999999999999999999999999999999999999999999 999999999999999999999999999999999777
Q ss_pred CCCCCceeEEeCCC-CC-----CCCCCCCc--cccCC------CCCCccCCc-ccccCChHHHHHHHHHHHHHhccccCC
Q 002170 164 LGSSAQIMTGISPK-NY-----EPPSDNFY--FEVGD------TSPIVQDDM-NLFDYNVPERVNDFVSAAIAQANITRT 228 (957)
Q Consensus 164 ~~~gs~i~th~~~~-~Y-----~~p~~~f~--f~~~~------~~~~~~~~~-~~~~~nv~~~~~~~~~~~~~~~~~~~t 228 (957)
..+|++||||+||+ +| |.||++|| ||..+ ..|||.++| .++++|+++|++.|++++++++..|++
T Consensus 212 ~~dgs~Ift~~lp~y~Y~~p~~~~p~p~~c~~Fd~~~~~~~~~~~cp~~~~p~~~~~~nv~~r~~~~~~~~~~~s~~~rt 291 (1050)
T PLN02701 212 AEETTDIFVHMMPFYSYDIPHTCGPEPAICCQFDFARMRGFQYELCPWGKHPVETNDENVQERAMKLLDQYRKKSTLYRT 291 (1050)
T ss_pred CCCCCEEEEEEccccccCcccccCCCcccccccccccccccccccCcccCCccccchhHHHHHHHHHHHHHHHhhccccC
Confidence 66799999999995 55 33446776 55542 135655554 578899999999999999999999999
Q ss_pred CeEEEEecCCCCC---cchhHHHHHHHHHHHHHhcCC--CeEEEEcChhhHHHHHHhcC----------------CCCCc
Q 002170 229 NHIMWTMGTDFKY---QYAHTWFRQMDKFIHYVNQDG--RVNALYSTPSMYIDAKYAAN----------------ESWPL 287 (957)
Q Consensus 229 ~~il~~~G~Df~y---~~a~~~~~~~~~li~~~N~~~--~~~v~~sT~~~Yf~a~~~~~----------------~~~p~ 287 (957)
+++|+|+|+||+| .+|..+|+||++||+++|+++ .++++||||++||+++++.. ..||+
T Consensus 292 n~iL~p~GdDf~~~~~~~a~~~f~n~dkli~~iN~~~~~~~~i~~ST~~~Yf~~l~~~~~~~~~~~~ge~~~~~~~~~p~ 371 (1050)
T PLN02701 292 NTLLVPLGDDFRYISIDEAEAQFRNYQKLFDYINSNPSLKAEVKFGTLEDYFSTLRDEADRINYSRPGEVGSGEVPGFPS 371 (1050)
T ss_pred CeEEEecCCCCCCcchhHHHHHHHhHHHHHHHHhhCcccCceEEECCHHHHHHHHHhhhccccccccccccccccCCCce
Confidence 9999999999999 577889999999999999863 58999999999999998753 57999
Q ss_pred ccCCCccCCcCCCCceeeeeccchhhhHHHHHHHHHHHHHHHHHhhhcc--------ccC---CCchHHHHHHHHhhhcc
Q 002170 288 KTDDFFPYADRENAYWTGYFTSRPALKGYVRTMSAYYLAARQLEFFKGR--------NEV---GLSTDSLADALALVQHH 356 (957)
Q Consensus 288 ~~gdf~py~~~~~~yWtG~yTSr~~~K~~~R~~e~~L~~aE~l~~la~~--------~~~---~~~~~~lw~~l~~~QhH 356 (957)
+.||||||+++.++||||||||||.+|+++|++|++|++||+|+++|.. .++ .+.++.+||+|+++|||
T Consensus 372 ~~gDff~Ya~~~~~yWTGyyTSRp~lK~~~R~~e~~L~~aE~L~sla~~~~~~~~~~~~~~~~~~~L~~~wk~l~~~QhH 451 (1050)
T PLN02701 372 LSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRAAEILFSFLLGYCRRFQCEKLPTSFSYKLTAARRNLALFQHH 451 (1050)
T ss_pred ecccccccccccccccceeeecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCChhhHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999999521 233 24578999999999999
Q ss_pred ccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCccccccC-CcccccCCCCcc-ccCCCCceEE
Q 002170 357 DAVSGTEKQHVADDYAKRLSIGYTEAEKVVAASLACLTEFSKNGCVNPITNFQQCP-LLNISYCPPSEV-DLSSGKSLVV 434 (957)
Q Consensus 357 DaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~-~ln~s~c~~~~~-~~~~~~~~~v 434 (957)
|||||||+++|++||..||.+++..++.+++.+++.|+......+..+...|+.|. .+|++.||.+.. .+..++...|
T Consensus 452 DaItGTsk~~V~~Dy~~rl~~~~~~~~~~~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 531 (1050)
T PLN02701 452 DGVTGTAKDHVVVDYGTRMHTSLQDLQIFMSAAVEVLLGIRHEKSDQTPSWFEPEQSRSKYDMLPVHKVINLREGKAHRV 531 (1050)
T ss_pred cCcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccCCCceEE
Confidence 99999999999999999999999999999999999998743222223334577784 468899987642 2234556899
Q ss_pred EEEcCCCceeeEEEEEEEeCCcEEEEcCCCCEEEEEEeecccccccccccccccccCCCCCCCCcEEEEEEEeeCCCceE
Q 002170 435 VVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYSTAYLGKSTNVTPSYWLAFSASVPPLGFN 514 (957)
Q Consensus 435 ~v~Npl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~ 514 (957)
+|||||+|+|+++|+|+|+.+.+.|+|.+|++|++|+++.+..... ......|+|+|.++||||||+
T Consensus 532 vvfNpL~~~r~~vV~v~V~~~~~~V~d~~g~~v~~Qi~~~~~~~~~-------------~~~~~~~~l~F~a~vPplG~~ 598 (1050)
T PLN02701 532 VFFNPLEQTREEVVMVVVDRPAVCVFDSNWTCVPSQISPEWQHDGE-------------KLFTGRHRLYWKASVPALGLE 598 (1050)
T ss_pred EEECCCCceeeEEEEEEecCCcEEEEcCCCCEEeEEEecccccccc-------------ccccceEEEEEEEecCCceeE
Confidence 9999999999999999999999999999999999999987542110 012346899999999999999
Q ss_pred EEEEEeCCccCCcccccee--------------eeccccCCCceEEccCeEEEEEECCCCcEEEEEecccceeeEEEEEE
Q 002170 515 TYIISSAKQAASHSGMRTV--------------YKSQIRQNDTIEVGPGNLKLLYSGKRAKLMRYINSKTSVNKLLEQSY 580 (957)
Q Consensus 515 ~~~i~~~~~~~~~~~~s~~--------------~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~~~~~~ 580 (957)
+|.|............+.+ ........+.++|||++++|+||+++|.|++|+++++|++..+.++|
T Consensus 599 ty~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ieN~~lkl~Fd~~TG~L~si~~~~~g~~~~v~q~f 678 (1050)
T PLN02701 599 TYFIANGNVSCEKAVPAKLKVFNSDDKFPCPEPYSCSKLEGDTVEISNSHQTLGFDVKTGLLRKIKIHKNGSETVVGEEI 678 (1050)
T ss_pred EEEEEEcCCCcccccccccccccccccccccccccccccCCCcEEEecCeEEEEEcCCCCceeEEEecccCceecceeee
Confidence 9999865322111000000 00001123458999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCCCCCcceEEccCCCC-ccCCCCCceEEEEeCCceEEEEEEE-----cCeEEEEEEEEcC-----CCcee
Q 002170 581 IYYRGDDGSKDLQPSGAYIFRPNGTY-PIEPEGQLSFTILRGPLLDEVHQRI-----NPWIYQVTRVYKG-----KDHAE 649 (957)
Q Consensus 581 ~~Y~~~~g~~~~~~sgAYiF~P~~~~-~~~~~~~~~i~v~~G~l~~~v~~~~-----~s~i~q~irLy~~-----~~~ie 649 (957)
.+|.+ +.||||+|+|++.+ +.. .....+.|++|||+++|++.+ +++++|++|||++ ...||
T Consensus 679 ~~Y~s-------~~SGAYiFrP~~~~~p~~-~~~~~~~v~~Gplv~eV~~~~~~~~~~s~isQ~iRLY~~~~~~~~~~vE 750 (1050)
T PLN02701 679 GMYSS-------QGSGAYLFKPDGEAQPIV-QAGGLVVVSEGPLVQEVHSVPKTKWEKSPLSRSTRLYHGGKSVQDLSVE 750 (1050)
T ss_pred eeecC-------CCCcceEEcCCCCCcccC-CCCceEEEEeCCEEEEEEEEeecccCCcceEEEEEEecCCCccccceEE
Confidence 99973 46899999998775 332 222355689999999999976 4789999999998 67899
Q ss_pred EEEEEccccccCCCCcEEEEEEEeeccCCCeEEEcCCcccceecccccccCcccccCCCcccceeeccceeeeEe-CCce
Q 002170 650 IEFTVGPIPIDDGIGKEVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKD-NSSE 728 (957)
Q Consensus 650 ~e~~v~~i~~~~~~~~el~~~f~t~i~s~~~fytDsnG~~~ikR~~~~~~~w~~~~~~pv~~nyYP~~s~~~I~D-~~~~ 728 (957)
++++||+||. |..|||++|||.|+|+|+++||||+|||||+||+ +|+ ++|++||||||++.|||+| ++.|
T Consensus 751 ~e~~V~~ip~-d~~~kEii~R~~T~i~s~~~FYTDsNG~qm~kR~-----~~~---~~Pv~gNYYPv~s~a~IqD~~~~r 821 (1050)
T PLN02701 751 KEYHVELLGH-DFNDKELIVRFKTDIDNKRVFYSDLNGFQMSRRE-----TYD---KIPLQGNYYPMPSLAFLQGSNGQR 821 (1050)
T ss_pred EEEEecCccc-CCCCcEEEEEEeecccCCCeEEEcCccceeeeec-----ccc---cCccccccccccceEEEEcCCCCe
Confidence 9999999987 6789999999999999999999999999999997 344 6999999999999999999 6689
Q ss_pred EEEEecCCccccccCCCeEEEEEEeeccCcCCcCcccccccccccccccCCeEEEeEEEEEecCccchh------h----
Q 002170 729 LSILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEALNETVCVFDKCEGLTIIGKYYLRIDPVGEAA------K---- 798 (957)
Q Consensus 729 ltvl~dr~~G~sS~~~G~ielml~Rr~~~dD~rGv~e~l~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~---- 798 (957)
|||+|||++||||+++|+||||||||+++||+|||||||+|+. ++..+|+|++++..... .
T Consensus 822 ltvltdrs~G~sSl~~GqLEiMLhRRLl~DD~rGvge~l~dnk---------~~~~~f~ll~e~~~~~~~~~~~~~~~~~ 892 (1050)
T PLN02701 822 FSVHSRQSLGVASLKNGWLEIMLDRRLVQDDGRGLGQGVMDNR---------PMNVVFHLLLESNISSSPPASNPLPLQP 892 (1050)
T ss_pred EEEEeccCcccccCCCcEEEEEEEeecccccCccccccccccc---------cccceEEEEEecccccCCCCCCCCcCCc
Confidence 9999999999999999999999999999999999999999984 46889999999654211 0
Q ss_pred --hcccchhhhccCceeeeeccCCC-ccccccccccccCcccccCCCcceEEEeeecCCC-------------cEEEEEe
Q 002170 799 --WRRSFGQEIYSPFLLAFTEQDGD-HWANSHLATYSAMDTTYVLPDNVALITLQELDSG-------------KILLRLA 862 (957)
Q Consensus 799 --~~r~~~~~l~~p~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~lp~nv~l~tl~~~~~~-------------~~llRl~ 862 (957)
..+..+..|++|++++++..... ........+|++|.+ +||||+||+|||++... .+|+|.+
T Consensus 893 Sl~sh~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~--~lpcD~hlv~lrt~~~~~~~~~~~~~~~~~~~l~r~~ 970 (1050)
T PLN02701 893 SLLSHRVGAHLNYPMHAFLAKKPQATSVENPQDTSFAPLAK--PLPCDLHIVNFKVPRPSKYSQQEAEDPRFGLLLQRRG 970 (1050)
T ss_pred cHHHHHHHHhhcCCchhhcccCccccccccccccccccccC--CCCCcEEEEEeeccCCcccccccCCCccEEEEEEecc
Confidence 12345678999999888533221 111111267888864 89999999999976432 3778876
Q ss_pred eccccc--cCCCCc--eeeeeeccccCCCCccceEEecccccchhhhHhhhcceeeeecCCCCCCCcccCCCCCCCCCce
Q 002170 863 HLYEIE--EDTDLS--VMSSVELKKVFPKKKISKVTEMNLSANQERAVMEKKRLVWRVEGSSKEQPTAVRGSPVDPAKLV 938 (957)
Q Consensus 863 ~~~~~~--~~~~~s--~~~~v~l~~lf~~~~~~~i~E~sLt~~~~~~~~~~~r~~w~~~~~~~~~~~~~~~~~~~~~~~~ 938 (957)
-.+... ....++ +...|+|.+||.++.+.++.+||||..++..+|. .+...-+ . .++...
T Consensus 971 ~d~~~~~~~~~~c~~~~~~~~~~~~lf~~l~~~~~~~tsl~~~~~~~~~~----~~~~~~~--------~----~~~~~~ 1034 (1050)
T PLN02701 971 WDSSYCRKGGTQCTTLANEPVNLFDMFKDLAVSKVKATSLNLLHDDAEML----GYRKQAG--------S----AAQEGI 1034 (1050)
T ss_pred cCcccccCCCccCcccCCcccchhhhhcccceeeeecccccccccchhhc----ccccccc--------c----cCCccc
Confidence 222221 111222 1223999999999999999999999998776552 1111100 0 112347
Q ss_pred EEecCcceeEEEEEEe
Q 002170 939 VELAPMEIRTFVIEFY 954 (957)
Q Consensus 939 v~l~P~eIrTf~v~~~ 954 (957)
|.|.||||+||+|+++
T Consensus 1035 i~l~pmei~~~~~~~~ 1050 (1050)
T PLN02701 1035 VLISPMEIQAYKLDLR 1050 (1050)
T ss_pred eeeccceeeeEEEecC
Confidence 9999999999999874
No 3
>KOG1958 consensus Glycosyl hydrolase, family 38 - alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-151 Score=1276.66 Aligned_cols=868 Identities=29% Similarity=0.465 Sum_probs=706.1
Q ss_pred ccccchhhhHHhHHHHHHhCCCCeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCHHHHHHH
Q 002170 12 FFVACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQ 91 (957)
Q Consensus 12 ~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~es~Irq 91 (957)
+-+.+.++||++++..|.++|++||+|+|++||++||..++|+.+++||+||++||||||+|||||||||.+||.+||+|
T Consensus 184 Yy~~~tr~Il~~~v~~L~e~~~~~FIwaEiS~~~~ww~~~~~~kk~a~k~lv~~GqlEIvtGGWVMpDEAn~Hy~~~i~q 263 (1129)
T KOG1958|consen 184 YYQRQTRHILNNMVNKLSEDPRMKFIWAEISFLERWWDDASPTKKNAVKRLVKNGQLEIVTGGWVMPDEANSHYFAMIDQ 263 (1129)
T ss_pred HHHHHHHHHHHHHHHHhhhCcccchhhhhHHHHHHhhhhcChHHHHHHHHHHhcCcEEEEeCccccCcccchhHHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHHhhcCCcEEEEeecChHhHHhhhccCceEEEEeeCCCCCCCCcee
Q 002170 92 TTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRASKSLGSSAQIM 171 (957)
Q Consensus 92 l~~G~~~l~~~fG~~p~v~W~~D~FGhS~~~p~il~~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~gs~i~ 171 (957)
+++||+||+.+.|++|+++|.|||||||++||+|| +++||++++|+|+||..|..++.++++||+||+.|+..+.++||
T Consensus 264 liEGh~Wl~~~igv~P~s~WaiDPFG~S~TmpYLL-~~ag~~~mlIQRvHYavKk~lA~qk~leF~WRQ~wds~~~tDl~ 342 (1129)
T KOG1958|consen 264 LIEGHQWLKNNIGVTPQSGWAIDPFGYSSTMPYLL-RRAGFENMLIQRVHYAVKKELAQQKSLEFIWRQYWDSTGDTDLL 342 (1129)
T ss_pred HhhhhhHHhccCCCCCCcccccCCCCCCcchHHHH-hhcCchhHHHHHHHHHHHHHHHHhcccceeehhhccCCCCcchh
Confidence 99999999999999999999999999999999999 89999999999999999999999999999999999888889999
Q ss_pred EEeCCC-CCCCC---------CCCCccccCC---CCCCc-cCCcccccCChHHHHHHHHHHHHHhccccCCCeEEEEecC
Q 002170 172 TGISPK-NYEPP---------SDNFYFEVGD---TSPIV-QDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGT 237 (957)
Q Consensus 172 th~~~~-~Y~~p---------~~~f~f~~~~---~~~~~-~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~ 237 (957)
||+||+ +|+.| |++|||.+++ ..||| ..+..|++.||++||+.+++||++.++.|++|.+|+|.||
T Consensus 343 tHmMPFysYDIphTCGPdP~ICCqFDFkRmpg~~~~Cpw~vpP~~It~~NVa~rA~~LldQyrKkS~Lfr~nVlLiPlGD 422 (1129)
T KOG1958|consen 343 THMMPFYSYDIPHTCGPDPKICCQFDFKRMPGGGCECPWGVPPEKITDANVAARAELLLDQYRKKSELFRTNVLLIPLGD 422 (1129)
T ss_pred eeecccccccCCCccCCCCceeeeeecccCCCCCcCCCCCCCCeeechhhHHHHHHHHHHHHHHHhhhcccceEEEecCC
Confidence 999998 78665 3689999875 24666 4455799999999999999999999999999999999999
Q ss_pred CCCCcchhHH---HHHHHHHHHHHhcC--CCeEEEEcChhhHHHHHHhc----C---CCCCcccCCCccCCcCCCCceee
Q 002170 238 DFKYQYAHTW---FRQMDKFIHYVNQD--GRVNALYSTPSMYIDAKYAA----N---ESWPLKTDDFFPYADRENAYWTG 305 (957)
Q Consensus 238 Df~y~~a~~~---~~~~~~li~~~N~~--~~~~v~~sT~~~Yf~a~~~~----~---~~~p~~~gdf~py~~~~~~yWtG 305 (957)
||||....+| |.|+.+|+++||+. ..+.++|+|++|||++|++. + ..||+++||||+|+|+.++||||
T Consensus 423 DFRy~~~~Ewd~Q~~NY~~LFD~iNs~~~~nv~aqFGTlsDYF~al~k~~~e~~kg~~~FPtlSGDFFtYaDr~d~YWSG 502 (1129)
T KOG1958|consen 423 DFRYDKITEWDQQFDNYQKLFDHINSRPLLNVQAQFGTLSDYFDALDKAYSERGKGQEPFPTLSGDFFTYADRDDHYWSG 502 (1129)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHhcccccceeeecCCHHHHHHHHHHhhccccCCCCCCcccccCceeeecccCcccee
Confidence 9999987765 99999999999986 46889999999999999875 1 34799999999999999999999
Q ss_pred eeccchhhhHHHHHHHHHHHHHHHHHhhhcc-------c--cC---CCchHHHHHHHHhhhccccccCccchhhHHHHHH
Q 002170 306 YFTSRPALKGYVRTMSAYYLAARQLEFFKGR-------N--EV---GLSTDSLADALALVQHHDAVSGTEKQHVADDYAK 373 (957)
Q Consensus 306 ~yTSr~~~K~~~R~~e~~L~~aE~l~~la~~-------~--~~---~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~ 373 (957)
||||||.+|++.|.+|++||+||.++++|.. . .+ ...+.+|||+|+++|||||||||||++|+.||..
T Consensus 503 YyTSRPFyK~ldRvLeh~lR~AEIl~s~a~~~~~r~~~~~r~~~~~~~~L~~ARRnL~LFQHHDaITGTaK~~Vv~DYg~ 582 (1129)
T KOG1958|consen 503 YYTSRPFYKRLDRVLEHYLRSAEILFSLALAHAHRVGLAQRIEESNYELLTAARRNLGLFQHHDAITGTAKDAVVVDYGQ 582 (1129)
T ss_pred eeecchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHhhhhhhcccccccccchhhhhhHHH
Confidence 9999999999999999999999999986421 1 11 2347789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccC-CCCCCCCccccccCCc--ccccCCC-CccccCCCCceEEEEEcCCCceeeEEEE
Q 002170 374 RLSIGYTEAEKVVAASLACLTEFSK-NGCVNPITNFQQCPLL--NISYCPP-SEVDLSSGKSLVVVVYNPLGWKREDIIR 449 (957)
Q Consensus 374 rl~~a~~~~~~~~~~~l~~L~~~~~-~~~~~~~~~~~~~~~l--n~s~c~~-~~~~~~~~~~~~v~v~Npl~~~r~~~V~ 449 (957)
||..++..++.++.+++..|+.... +....+.-.+-+.... +.+.-|. +-..+ +..+..|++||||.+.|.++|+
T Consensus 583 rl~~Sl~~~~~v~~~~~~~Ll~~~~~~y~~~~~~~~~emd~~r~~~~~~pek~~~~~-~~~~~~vvlfN~l~q~R~evv~ 661 (1129)
T KOG1958|consen 583 RLHESLVNLQIVLENALELLLGKDSETYNSDPSHSFIEMDDIRDSEDSLPEKTVIGL-SSGPRSVVLFNPLEQEREEVVT 661 (1129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCceehhhcccCCCcCcccceeec-cCCCceEEEeccchhhhhccEE
Confidence 9999999999999999999887542 2222222111111100 1111121 01112 2334689999999999999999
Q ss_pred EEEeCCcEEEEcCCCCEEEEEEeecccccccccccccccccCCCCCCCCcEEEEEEEeeCCCceEEEEEEeCCccCCccc
Q 002170 450 IPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYSTAYLGKSTNVTPSYWLAFSASVPPLGFNTYIISSAKQAASHSG 529 (957)
Q Consensus 450 i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~~~i~~~~~~~~~~~ 529 (957)
|.|+.+.+.|.+..|.+|++||.|+|..+... ....+.|.|.|.+.|||||..+|++..+..+.....
T Consensus 662 i~V~sp~V~V~~d~g~pv~~Qispvw~~~~tk------------~~~~~~~~l~f~a~vpplgl~v~~~~~~~~~~~~~l 729 (1129)
T KOG1958|consen 662 IRVNSPEVSVLDDGGVPVEAQISPVWQDTKTK------------TIKPGSYRLSFKATVPPLGLMVLRIDSGGLTEHAKL 729 (1129)
T ss_pred EEecCCeeEEEcCCCceeeEeeccceeccccc------------eeecceeEEEEEEecccceeeEEEeeccCccccccc
Confidence 99999999999999999999999999632110 012346999999999999999999987633222111
Q ss_pred cce--------eeecc--ccCCCceEEccCeEEEEEECCCCcEEEEEecccceeeEEEEEEEEeecCCCCCCCCCCcceE
Q 002170 530 MRT--------VYKSQ--IRQNDTIEVGPGNLKLLYSGKRAKLMRYINSKTSVNKLLEQSYIYYRGDDGSKDLQPSGAYI 599 (957)
Q Consensus 530 ~s~--------~~~~~--~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~~~~~~~~Y~~~~g~~~~~~sgAYi 599 (957)
.++ +.... ....+..+++|++..|.|++.+|+|+++..+..+....+...|.-|....+ ++.||||.
T Consensus 730 ~s~~~~~~~~~~~s~~~~~~~~~~s~~~~~~~~l~fd~~~G~i~~~~~~~D~~~~~~q~~f~~y~~~~~---~~~sgayl 806 (1129)
T KOG1958|consen 730 PSKDTSFPAWDLGSSSTIGDSRELSTLRNEYFELRFDPETGTIKSINSLSDNKHFESQVSFSNYGERIS---GDESGAYL 806 (1129)
T ss_pred ccCCCCcccCCCccceeecCccccceeeccceeEEeccccchhhhhhhcccCCCcccceeecccccccc---CCCCceEE
Confidence 111 00000 011224589999999999999999999888888888888888888865543 77899999
Q ss_pred EccCCCC-ccCCCCCceEEEEeCCceEEEEEEEcC---eEEEEEEEEcCCCceeEEEEEccccccCCCCcEEEEEEEeec
Q 002170 600 FRPNGTY-PIEPEGQLSFTILRGPLLDEVHQRINP---WIYQVTRVYKGKDHAEIEFTVGPIPIDDGIGKEVVTQITSNM 675 (957)
Q Consensus 600 F~P~~~~-~~~~~~~~~i~v~~G~l~~~v~~~~~s---~i~q~irLy~~~~~ie~e~~v~~i~~~~~~~~el~~~f~t~i 675 (957)
|.|+|++ ++..-....|.+ +|+|+++|.+...+ ...|.+++|.|. .+|++..| ++.+..+.|+.|||.|++
T Consensus 807 f~p~G~a~~~i~~~~p~v~v-~g~L~qev~~~~~~v~~~~~~~~~~~~G~-~vei~~~v---di~~~~n~Ela~R~st~v 881 (1129)
T KOG1958|consen 807 FLPDGNAKPIIELQWPHVRV-KGPLVQEVSQFLKNVLHRLSQNVRGYSGE-EVEISNSV---DIRKEDNTELAMRFSTDV 881 (1129)
T ss_pred EccCCCCCCceecCCCeEEe-ecceeeeeccccchHHHhchhheeccCCc-ceeeecee---ecccccchhhhhhhhhcc
Confidence 9999985 543334446666 99999999987643 233788999987 68888777 455667999999999999
Q ss_pred cCCCeEEEcCCcccceecccccccCcccccCCCcccceeeccceeeeEeCCceEEEEecCCccccccCCCeEEEEEEeec
Q 002170 676 ISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDNSSELSILVDRSVGGSSIADGQLELMLHRRL 755 (957)
Q Consensus 676 ~s~~~fytDsnG~~~ikR~~~~~~~w~~~~~~pv~~nyYP~~s~~~I~D~~~~ltvl~dr~~G~sS~~~G~ielml~Rr~ 755 (957)
++.+.||||+||+||+||.+. .+.|+++|||||.++++|+|.+.+|++++.+++|++|+.+|+||||++||+
T Consensus 882 ds~~~FyTDlnG~Q~~kR~~~--------~KlPlQaNyYPmpt~a~Iq~~~~RlsihS~q~lGvssL~sG~iEIm~DRrL 953 (1129)
T KOG1958|consen 882 DSGDLFYTDLNGMQMIKRRRL--------DKLPLQANYYPMPTAAFIQDAKQRLSIHSAQSLGVSSLESGQIEIMLDRRL 953 (1129)
T ss_pred cCCceeeeccchhhhhhhhhc--------ccCcccceeecccceeeeecCCceEEEEeecccCccccccceEEEEecccc
Confidence 999999999999999999865 478999999999999999999999999999999999999999999999999
Q ss_pred cCcCCcCcccccccccccccccCCeEEEeEEEEEecCccchhh------------hcccchhhhccCceeeeeccCCCcc
Q 002170 756 VADDNRGVSEALNETVCVFDKCEGLTIIGKYYLRIDPVGEAAK------------WRRSFGQEIYSPFLLAFTEQDGDHW 823 (957)
Q Consensus 756 ~~dD~rGv~e~l~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~~r~~~~~l~~p~~~~~~~~~~~~~ 823 (957)
.+||+||||+|+.|+- ++...|+|++++.+.+.. ..+...+.+++|+..++..... +
T Consensus 954 ~~DD~rGLgqGv~DNk---------~t~~~frlv~e~~~s~~~p~e~~~~~~ps~~ah~a~~~l~yP~~~f~~~~pk--~ 1022 (1129)
T KOG1958|consen 954 NQDDGRGLGQGVIDNK---------PTDMKFRLVLESLNSAQDPTENSRVSYPSLAAHLASQSLNYPLMKFIYAEPK--K 1022 (1129)
T ss_pred cCCCCccccccccccc---------hhhheeeeeecccccccCchhcCCCCChhhhhhcccceecCCchhhcccCCC--C
Confidence 9999999999998874 467789999987764221 1123457788999877632221 1
Q ss_pred ccccccccccCcccccCCCcceEEEeeecCCC--------cEEEEEeecccccc-CCCCceeeeeeccccCCCCccceEE
Q 002170 824 ANSHLATYSAMDTTYVLPDNVALITLQELDSG--------KILLRLAHLYEIEE-DTDLSVMSSVELKKVFPKKKISKVT 894 (957)
Q Consensus 824 ~~~~~~~~~~l~~~~~lp~nv~l~tl~~~~~~--------~~llRl~~~~~~~~-~~~~s~~~~v~l~~lf~~~~~~~i~ 894 (957)
... ...|.++. .+|||++|++|++++.+. .||+|- ...|+. +...+....+++.+++.. +++++
T Consensus 1023 i~~-~g~~~~~~--~~lpcDl~lvt~rtl~~~~~~~~~~~lil~R~--~~~c~~~~~g~c~~~ki~~~~ll~~--~~~v~ 1095 (1129)
T KOG1958|consen 1023 IED-QGIFEPLN--LSLPCDLHLVTFRTLESSKAAEKRAALILHRH--ATDCRSQKKGTCGQLKISVMDLLIK--AKSVK 1095 (1129)
T ss_pred hhh-cccccccc--CCCccceeEEEeeeccCcccccccceeeeeec--ccccccccccccccccCcHHHHHHH--HHhhc
Confidence 111 23355554 389999999999999754 377775 345542 111122446777788876 88899
Q ss_pred ecccccchhhhHhhhcceeeeecCCCCCCCcccCCCCCCCCCceEEecCcceeEEEEEE
Q 002170 895 EMNLSANQERAVMEKKRLVWRVEGSSKEQPTAVRGSPVDPAKLVVELAPMEIRTFVIEF 953 (957)
Q Consensus 895 E~sLt~~~~~~~~~~~r~~w~~~~~~~~~~~~~~~~~~~~~~~~v~l~P~eIrTf~v~~ 953 (957)
.|+|++.+..... .++ ....++||||++|++.+
T Consensus 1096 ~tsLs~l~~~~~~----------------------~~~----~~~~~~pme~~~~l~~~ 1128 (1129)
T KOG1958|consen 1096 KTSLSLLQEVGGI----------------------IGV----EEQELSPMEISAFLTSL 1128 (1129)
T ss_pred hhhHHhhhhcccC----------------------CCc----ccccccccccccccccc
Confidence 9999988654322 111 13456999999998764
No 4
>PRK09819 alpha-mannosidase; Provisional
Probab=100.00 E-value=4.6e-102 Score=962.58 Aligned_cols=806 Identities=14% Similarity=0.172 Sum_probs=592.5
Q ss_pred ccccc--ccccchhhhHHhHHHHHHhCCCCeEEE--eeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCC
Q 002170 7 AFRFF--FFVACVQNVLDSLIPALVADKNRKFIY--VEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAA 82 (957)
Q Consensus 7 ~~~~~--~~~~~v~~il~~vl~~L~~~p~~kF~~--~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~ 82 (957)
+|-|+ ..+.++.++|++||++|++||+++|++ +|++++++|| +.+|+++++||+||++||| ++||||||+||++
T Consensus 17 ~Wl~~~~~~~~~~~~~~~~vl~lle~~p~~~f~~~d~q~~~l~~~~-~~~Pe~~~~ik~lV~~Grl-~~G~W~v~~D~~l 94 (875)
T PRK09819 17 EWYFTTERSRILLVNNMEEILDRLEQDNDYKYYVLDGQTSLLEDYL-AVKPEDKERVKKLVQAGKL-IIGPWYTQTDQLV 94 (875)
T ss_pred hhcCChHHhHHHHHHHHHHHHHHHHhCCCcceEEEchhHHHHHHHH-HhChHHHHHHHHHHHcCCE-eECcEEeeccccc
Confidence 45444 455677799999999999999999865 4788787676 7899999999999999999 6788889999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHHhhcCCcEEEEeecChHhHHhhhccCceEEEEeeCC
Q 002170 83 PHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRASK 162 (957)
Q Consensus 83 ~~~es~Irql~~G~~~l~~~fG~~p~v~W~~D~FGhS~~~p~il~~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d 162 (957)
+||||+||||++|++|+ ++||..|++||+|||||||++||||| ++|||+++++||+..+. ......+|+|+|+|
T Consensus 95 ~sgEsliRqll~G~~~~-~~fG~~~~vgwlpD~FG~s~~lPqIl-~~~Gi~~~~~wr~~~~~----~~~~~~~F~W~g~D 168 (875)
T PRK09819 95 VSGESIVRNLLYGIRDC-REFGEPMKIGYLPDSFGQSGQMPQIY-NGFGITRTLFWRGVSDR----HGTDKTEFLWQSDD 168 (875)
T ss_pred CCHHHHHHHHHHHHHHH-HHcCCCCceeeecCCCCCcHHHHHHH-HhCCCCeEEEEeccccc----ccCCCceEEEECCC
Confidence 99999999999999998 68999999999999999999999999 99999999999975321 11235689999999
Q ss_pred CCCCCCceeEEeCCCCCCCCCCCCccccCCCCCCccCCcccccCChHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCc
Q 002170 163 SLGSSAQIMTGISPKNYEPPSDNFYFEVGDTSPIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQ 242 (957)
Q Consensus 163 ~~~~gs~i~th~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~ 242 (957)
||+||||++|.+|+.+ .. .+ ....+++++++.+++.++++ ..++++|+|+|+|+.+.
T Consensus 169 ----Gs~V~t~~~~~~Y~~g-~~-----~~----------~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~G~d~~p~ 225 (875)
T PRK09819 169 ----GSEVLAQQLPLGYAIG-KY-----LP----------EDEEELKKRLDEYFGVLEKK---SSTKNILLPNGHDQMPL 225 (875)
T ss_pred ----CCeEEEEECccccccC-CC-----CC----------cCHHHHHHHHHHHHHHHhhc---CCCCcEEEecCCCCCcc
Confidence 9999999999999765 11 10 12346777777777666543 57899999999998554
Q ss_pred chhHHHHHHHHHHHHHhcC-CCeEEEEcChhhHHHHHHhcCCCCCcccCCCcc--CCcCCCCceeeeeccchhhhHHHHH
Q 002170 243 YAHTWFRQMDKFIHYVNQD-GRVNALYSTPSMYIDAKYAANESWPLKTDDFFP--YADRENAYWTGYFTSRPALKGYVRT 319 (957)
Q Consensus 243 ~a~~~~~~~~~li~~~N~~-~~~~v~~sT~~~Yf~a~~~~~~~~p~~~gdf~p--y~~~~~~yWtG~yTSr~~~K~~~R~ 319 (957)
. ++|.++|+.+|+. +.+++++||+++||+++++....||++.|||+. |.. .| +||||||+.+|++||+
T Consensus 226 ~-----~~~~e~i~~~~~~~~~~~~~~st~~~yf~~l~~~~~~lp~~~GEl~~~~y~~-~H---rG~~TSr~~iK~~nr~ 296 (875)
T PRK09819 226 Q-----KNLFEVMDKLNEIYPEREFVISRFENVFEKLEKQRDNLPTLKGEFIDGKYMR-VH---RSIFSTRMDIKIANAR 296 (875)
T ss_pred c-----ccHHHHHHHHHhhCCCCcEEECCHHHHHHHHHhhcCCCCeeeeecCCCcccc-cc---CCccccHHHHHHHHHH
Confidence 3 4677788888864 568999999999999998877889999999974 322 23 4999999999999999
Q ss_pred HHHHHH-HHHHHHhhhc---cccCCCchHHHHHHHHhhhccccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002170 320 MSAYYL-AARQLEFFKG---RNEVGLSTDSLADALALVQHHDAVSGTEKQHVADDYAKRLSIGYTEAEKVVAASLACLTE 395 (957)
Q Consensus 320 ~e~~L~-~aE~l~~la~---~~~~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~l~~L~~ 395 (957)
+|++|+ .+|+|+++|. ..|+...++++||.|+++||||+||||++++|++|+..|+.++.+.++.+++.+++.|+.
T Consensus 297 ~E~~L~~~~E~l~~la~~~g~~yp~~~l~~~Wk~ll~nq~HD~i~G~sid~V~~d~~~r~~~~~~~~~~l~~~~l~~l~~ 376 (875)
T PRK09819 297 IENKIVNVLEPLASIAYSLGFEYPHGLLEKIWKEMFKNHAHDSIGCCCSDTVHRDIVARYKLAEDLADNLLDFYMRKIAD 376 (875)
T ss_pred HHHHHHHHhchHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 4999999874 356777899999999999999999999999999999999999999999999999999875
Q ss_pred ccCCCCCCCCccccccCCcccccCCCCccccCCCCceEEEEEcCCCceeeEEEEEEEe--CCcEEEEcCCCCEEEEEEee
Q 002170 396 FSKNGCVNPITNFQQCPLLNISYCPPSEVDLSSGKSLVVVVYNPLGWKREDIIRIPVI--NENVTVKDSKGKVIESQLLP 473 (957)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~~~~~~~~~v~v~Npl~~~r~~~V~i~v~--~~~~~v~d~~g~~v~~Qi~~ 473 (957)
... .++...++||||++|+|+++|++++. ...+.|.|.+|++|++|+..
T Consensus 377 ~i~-----------------------------~~~~~~~~vfN~l~~~r~~~v~i~~~~~~~~~~~~d~~g~~v~~~v~~ 427 (875)
T PRK09819 377 NMP-----------------------------QSDADKLTVFNLLPYEREEVINTTVYLPASQFTLRDDRGNPLPYTIRE 427 (875)
T ss_pred hcC-----------------------------cCCCCEEEEEcCCCccceeEEEEEEEeccCCEEEECCCCCEeeEEEee
Confidence 320 12345899999999999999998774 56889999999999999986
Q ss_pred cccccccccccccccccCCCCCCCCcEEEEEEE-eeCCCceEEEEEEeCCccCCccccceeeeccccCCCceEEccCeEE
Q 002170 474 LLKDSMSLRNSYSTAYLGKSTNVTPSYWLAFSA-SVPPLGFNTYIISSAKQAASHSGMRTVYKSQIRQNDTIEVGPGNLK 552 (957)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~-~vPplG~~~~~i~~~~~~~~~~~~s~~~~~~~~~~~~~~ieN~~~~ 552 (957)
.......+...... ..+. ......+.+.|.+ .||||||++|.+.......... ........|||++|+
T Consensus 428 ~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~f~~~~vP~lG~~~~~i~~~~~~~~~~---------~~~~~~~~ieN~~~~ 496 (875)
T PRK09819 428 KRDIDPGLLDRQIV-HYGN-YDPFMEFDIQINVQILPAMGYRTLYIELNEEGNVIE---------PKSSAEGIIENEFYQ 496 (875)
T ss_pred ccccccchhhccee-ccCC-CCceEEEEEEEEECCCCCcccEEEEEEeCCcccccc---------ccccccceEecCcEE
Confidence 54321111000000 0000 0001246788874 8999999999987643311100 123346789999999
Q ss_pred EEEECCCCcEEEEEecccceeeEEEEEEEEeecCCCCCCCCCCcceEEccCCCC-ccCCC-CCceEEEEeCCceEEEEEE
Q 002170 553 LLYSGKRAKLMRYINSKTSVNKLLEQSYIYYRGDDGSKDLQPSGAYIFRPNGTY-PIEPE-GQLSFTILRGPLLDEVHQR 630 (957)
Q Consensus 553 v~~~~~~G~l~si~dk~~g~~~~~~~~~~~Y~~~~g~~~~~~sgAYiF~P~~~~-~~~~~-~~~~i~v~~G~l~~~v~~~ 630 (957)
|+|+ ++|.| +|+||.+|+++. ++..|.+. ++.+|||+|.|.... .+... ....+.+++|+++++++++
T Consensus 497 v~i~-~~G~l-~l~dk~~gr~~~---~~~~~~d~-----~d~gD~yd~~p~~~d~~~~~~~~~~~~~v~~~~~~~~~~i~ 566 (875)
T PRK09819 497 ITLN-ENGTL-TIVDKKSGKTYD---RQLIIEEN-----GDDGDEYDYSPPREDWVITSAEAVPSVEISHSAWQSRAVIR 566 (875)
T ss_pred EEEe-cCCcE-EEEECCCCcEEe---ceEEEEec-----CcCCCCcccCCCCCCCEEeccCCcceEEEEEcCCeEEEEEE
Confidence 9999 68999 699999999874 55566543 778999999986543 22222 2356778889998887766
Q ss_pred Ec------------------CeEEEEEEEEcCCCceeEEEEEccccccCCCCcEEEEEEEeeccCCCeEEEcCCccccee
Q 002170 631 IN------------------PWIYQVTRVYKGKDHAEIEFTVGPIPIDDGIGKEVVTQITSNMISNKTFYTDSSGRDFIE 692 (957)
Q Consensus 631 ~~------------------s~i~q~irLy~~~~~ie~e~~v~~i~~~~~~~~el~~~f~t~i~s~~~fytDsnG~~~ik 692 (957)
+. +.++|+++|++++++|+|+++|++. ..+|.|++.|+++|.++.++| | .+|++|+
T Consensus 567 ~~~~~p~~~~~r~~~~~~~~~~i~~~i~L~~~s~~i~~~~~vdw~----~~~~~Lrv~fp~~i~~~~~~~-d-~~fG~i~ 640 (875)
T PRK09819 567 YRLAVPKNLEERAAGQKTGRMPVKLVVTLSKNSRRIDFDVNLDNQ----ADDHRLRVLFPTEIASKFSLA-D-QQFGSIT 640 (875)
T ss_pred EEEeCCcChhhHhhccccceEEEEEEEEEecCCCEEEEEEEEecc----ccceEEEEEccCCCCCCceEc-C-CCceEEE
Confidence 42 4688999999999999999999653 578999999999999976544 5 7899999
Q ss_pred ccccc--ccCcccccCCCcccceeeccceeeeEeCCceEEEEecCCccccccCC--CeEEEEEEeeccC---cC-----C
Q 002170 693 RIRDY--RKDWNLEVNQPIAGNYYPVNLGIYMKDNSSELSILVDRSVGGSSIAD--GQLELMLHRRLVA---DD-----N 760 (957)
Q Consensus 693 R~~~~--~~~w~~~~~~pv~~nyYP~~s~~~I~D~~~~ltvl~dr~~G~sS~~~--G~ielml~Rr~~~---dD-----~ 760 (957)
|+++. .++|+.+..+..+.+.|||++||+|+|+++|++|+||++||+....+ +.|.|+|.|+..+ +| +
T Consensus 641 Rp~~~~~~~~W~~~~~~e~p~~~~~~~~~v~ls~~~~Gvall~dg~~ey~v~g~~~~~i~LTLlRs~g~lgk~~l~~rpg 720 (875)
T PRK09819 641 RPVNDPAMDVWEQEGWQEAPISIEPMQSFVALHDERHGVAVFTEGVREYEIIGENYDTIALTLFRGVGLLGKEDLLYRPG 720 (875)
T ss_pred CCCcCccccccccccceeCCCCChhhhceEEEecCCceEEEECCCcceEEEecCCCCeEEEEeecccCccCCCccccCCC
Confidence 99865 46898775544445589999999999999999999999999964432 4899999999843 11 2
Q ss_pred cCcccccccccccccccCCeEEEeEEEEEe--cCccchhhhcccchhhhccCceeeeeccC----CCccccccccccccC
Q 002170 761 RGVSEALNETVCVFDKCEGLTIIGKYYLRI--DPVGEAAKWRRSFGQEIYSPFLLAFTEQD----GDHWANSHLATYSAM 834 (957)
Q Consensus 761 rGv~e~l~e~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~r~~~~~l~~p~~~~~~~~~----~~~~~~~~~~~~~~l 834 (957)
|+-|..+-+.. .+|.|. .+-+|.|.. +....+. . .+.+++++.|+.++-.... ...........++.+
T Consensus 721 r~sG~~~ptP~---aq~~G~-h~f~y~l~ph~g~~~~~~-~-~~~a~~~n~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 794 (875)
T PRK09819 721 RPSGIKIPTPD---SQLLGE-LSFRFSLTSYEGTFDEAG-V-AQQAKEYLTPVQCYNKIPFLNMRLNDEEFTLPESYSLL 794 (875)
T ss_pred cccCCccCCCh---HHhcCc-eEEEEEEEEccCCcchHH-H-HHHHHHhccCcceeecccccccccCcccCCCCccccce
Confidence 22221111100 123342 233444443 2232222 2 3478899999876521100 000000011122222
Q ss_pred cccccCCCcceEEEeeecCCC-cEEEEEeeccccccCCCCceeeeeeccccCCCCccceEEecccccchhhhHhhhccee
Q 002170 835 DTTYVLPDNVALITLQELDSG-KILLRLAHLYEIEEDTDLSVMSSVELKKVFPKKKISKVTEMNLSANQERAVMEKKRLV 913 (957)
Q Consensus 835 ~~~~~lp~nv~l~tl~~~~~~-~~llRl~~~~~~~~~~~~s~~~~v~l~~lf~~~~~~~i~E~sLt~~~~~~~~~~~r~~ 913 (957)
. ..+.+|.+-++|+.+++ .++||+.+....... .+.+.+ +..+.++.|++|.+... ...
T Consensus 795 ~---~~~~~i~~sa~K~aed~~~~ilRlyn~~~~~~~-----~~~l~~-----~~~~~~~~~~~l~E~~~-~~~------ 854 (875)
T PRK09819 795 K---MPPDGAVLSAVKKAEDRDGLILRFFNPAESKTC-----DATVAF-----SKEVKSLDETMLDEKIT-TEE------ 854 (875)
T ss_pred e---eCCCCEEEEEEEEeccCCCEEEEEeCCCCCccc-----ccccee-----ccchhheeecccccccc-ccc------
Confidence 1 12458999999999865 599995542111110 111211 23566778888887521 111
Q ss_pred eeecCCCCCCCcccCCCCCCCCCceEEecCcceeEEEEE
Q 002170 914 WRVEGSSKEQPTAVRGSPVDPAKLVVELAPMEIRTFVIE 952 (957)
Q Consensus 914 w~~~~~~~~~~~~~~~~~~~~~~~~v~l~P~eIrTf~v~ 952 (957)
.+.+.. .++|+|.||+|++|.
T Consensus 855 -----------------~~~~~~-~~~~~p~eI~T~~i~ 875 (875)
T PRK09819 855 -----------------NQGSNL-SGELKPCQVQTFLVK 875 (875)
T ss_pred -----------------cccccc-cccccCCeeEEEEeC
Confidence 011111 267999999999973
No 5
>KOG4342 consensus Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-84 Score=702.20 Aligned_cols=740 Identities=16% Similarity=0.211 Sum_probs=564.8
Q ss_pred cccccccccchhhhHHhHHHHHHhCCCCeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCHH
Q 002170 7 AFRFFFFVACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYI 86 (957)
Q Consensus 7 ~~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~e 86 (957)
-|||-.+++++.+.+.+.+.+|+++|+++|+.++...| +|.++.+|+.++++++.+..||+-.|||.||++|.++|+||
T Consensus 296 LWPFaETrRKivRSW~tq~~lMdR~PEy~FvcSQAqQ~-~WlkedhP~~f~kl~e~~~q~qF~pvGGtWVE~DtNiPsGE 374 (1078)
T KOG4342|consen 296 LWPFAETRRKIVRSWVTQLQLMDRNPEYIFVCSQAQQL-EWLKEDHPGLFSKLQEFACQGQFVPVGGTWVEMDTNIPSGE 374 (1078)
T ss_pred hcChHHHHHHHHHHHHHHHhHHhhCcceeEehhhHHHH-HHHhhhChhHHHHHHHHHhcCceeeccceEEecCCCCCChH
Confidence 37888899999999999999999999999999987756 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHHhhcCCcEEEEeecChHhHHhhhccCceEEEEeeCCCCCC
Q 002170 87 DMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRASKSLGS 166 (957)
Q Consensus 87 s~Irql~~G~~~l~~~fG~~p~v~W~~D~FGhS~~~p~il~~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~ 166 (957)
|||||++.|++|+.++||.+.+.-|+||+||+|+|||||+ +.+||+.|++++++|+..|.+|... |.|.|.|
T Consensus 375 slvRQFl~GQ~FFlkeFG~~c~~FWLPDTFGYSsQ~PQic-rlcGidrFLTQKLSWNniNSFPhsT---FnW~glD---- 446 (1078)
T KOG4342|consen 375 SLVRQFLQGQNFFLKEFGKMCSEFWLPDTFGYSSQLPQIC-RLCGIDRFLTQKLSWNNINSFPHST---FNWEGLD---- 446 (1078)
T ss_pred HHHHHHHhhhhHHHHHhhhhhcceeccccccccchhhHHH-HhhcHHHHHHhhccccccCcCCccc---eeeeecc----
Confidence 9999999999999999999999999999999999999999 9999999999999999999999887 9999999
Q ss_pred CCceeEEeCCC-CCCCCCCCCccccCCCCCCccCCcccccCChHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCcchh
Q 002170 167 SAQIMTGISPK-NYEPPSDNFYFEVGDTSPIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAH 245 (957)
Q Consensus 167 gs~i~th~~~~-~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~ 245 (957)
||+|++|+.|. .|... .+ +.+.+..+.......+.++-|+.+| +++++
T Consensus 447 GSqvl~HmPPgntYtad-----------------------~~----v~dVL~tv~qnk~~~~~~~gl~lfG----~GDGG 495 (1078)
T KOG4342|consen 447 GSQVLVHMPPGNTYTAD-----------------------GS----VEDVLKTVAQNKDKGRANHGLFLFG----FGDGG 495 (1078)
T ss_pred CceEEEecCCCCccccc-----------------------Cc----HHHHHHHHHhcCCccccCcceEEEE----ecCCC
Confidence 99999999775 56543 12 2345555555556667788888888 55542
Q ss_pred --HHHHHHHHHHH---HHhcCC-CeEEEEc-ChhhHHHHHHhc---CCCCCcccC-CCccCCcCCCCceeeeeccchhhh
Q 002170 246 --TWFRQMDKFIH---YVNQDG-RVNALYS-TPSMYIDAKYAA---NESWPLKTD-DFFPYADRENAYWTGYFTSRPALK 314 (957)
Q Consensus 246 --~~~~~~~~li~---~~N~~~-~~~v~~s-T~~~Yf~a~~~~---~~~~p~~~g-df~py~~~~~~yWtG~yTSr~~~K 314 (957)
..-+.++||.+ .-|..+ -|+++.+ |+++||+++.++ +..||+|.| .||++|+ |+|||++.+|
T Consensus 496 GGPT~eML~klrR~r~~~Nt~G~lP~vqlg~tvdeffd~ilkrtnqg~~LptW~GELyfEfHr-------GTYTtqAq~K 568 (1078)
T KOG4342|consen 496 GGPTQEMLDKLRRIRSLSNTDGVLPRVQLGITVDEFFDAILKRTNQGHDLPTWVGELYFEFHR-------GTYTTQAQIK 568 (1078)
T ss_pred CCCcHHHHHHHHHhhcccccCCcccceeecCCHHHHHHHHHhhhccCCcccccchheEEEEec-------CceeeHHHHH
Confidence 34566776655 334455 7899999 999999999876 456999976 5789999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc-----ccCCCchHHHHHHHHhhhccccccCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002170 315 GYVRTMSAYYLAARQLEFFKGR-----NEVGLSTDSLADALALVQHHDAVSGTEKQHVADDYAKRLSIGYTEAEKVVAAS 389 (957)
Q Consensus 315 ~~~R~~e~~L~~aE~l~~la~~-----~~~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl~~a~~~~~~~~~~~ 389 (957)
+++|++|..|+.+|.++++|.. .||...++.||+.++++||||.+||++++.|+++.+-.+.+....++.++..+
T Consensus 569 KlmR~~Ei~LHD~E~~sslas~~s~dy~YP~~qlq~LWr~~LLcQFHDVlpGSCIeMVykeA~p~~~~v~k~~~tLl~~a 648 (1078)
T KOG4342|consen 569 KLMRECEIILHDVELLSSLASARSADYLYPAAQLQHLWRLLLLCQFHDVLPGSCIEMVYKEAMPHYEDVRKHGNTLLSAA 648 (1078)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccccCcHHHHHHHHHHHHHHHhcccCCcHHHHHHHHhhhhHHHHHHHhhHHHHHHH
Confidence 9999999999999999998753 35667899999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCCCCccccccCCcccccCCCCccccCCCCceEEEEEcCCCceeeEEEEEEEeCCcEEEEcCCCCEEEE
Q 002170 390 LACLTEFSKNGCVNPITNFQQCPLLNISYCPPSEVDLSSGKSLVVVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIES 469 (957)
Q Consensus 390 l~~L~~~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~~~~~~~~~v~v~Npl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~ 469 (957)
++.|.... .+...+++.|+|+|.|.+++.++-+..... .
T Consensus 649 ~~~L~as~-------------------------------s~ke~L~~~nTLpW~~~~v~~~~kp~k~~~----------~ 687 (1078)
T KOG4342|consen 649 AAALCASE-------------------------------SGKEGLLIVNTLPWKRIEVMALPKPGKAHS----------L 687 (1078)
T ss_pred HHHHhcCC-------------------------------CCccceEEEeccccceeeeecccCCCCcee----------E
Confidence 99885321 123468999999999999887664422110 0
Q ss_pred EEeecccccccccccccccccCCCCCCCCcEEEEEEEeeCCCceEEEEEEeCCccCCccccceeeeccccCCCceEEccC
Q 002170 470 QLLPLLKDSMSLRNSYSTAYLGKSTNVTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGMRTVYKSQIRQNDTIEVGPG 549 (957)
Q Consensus 470 Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~~~i~~~~~~~~~~~~s~~~~~~~~~~~~~~ieN~ 549 (957)
-..++|.+|++... ... +++... ...+.++|.|+
T Consensus 688 ----------------------------------e~c~~~g~~ta~vt-------~~~---~p~~~y--q~Dd~~~L~Ng 721 (1078)
T KOG4342|consen 688 ----------------------------------ELCTVPGMGTAPVT-------PPT---SPVFVY--QTDDSVTLDNG 721 (1078)
T ss_pred ----------------------------------EEeccCCccccCCC-------CCC---CceeEE--ecCCeEEEECC
Confidence 02356666654321 000 111111 24567899999
Q ss_pred eEEEEEECCCCcEEEEEecccceeeEE---------EEEEEEeecCCCCCCCCCCcceEEccCCCCccCC-CCCceEEE-
Q 002170 550 NLKLLYSGKRAKLMRYINSKTSVNKLL---------EQSYIYYRGDDGSKDLQPSGAYIFRPNGTYPIEP-EGQLSFTI- 618 (957)
Q Consensus 550 ~~~v~~~~~~G~l~si~dk~~g~~~~~---------~~~~~~Y~~~~g~~~~~~sgAYiF~P~~~~~~~~-~~~~~i~v- 618 (957)
.+||+++ .+|.|+||+|...|++..- .++|..|.+. +-.+.||+-.-..-+.+++ .....+.|
T Consensus 722 ~lrV~i~-p~G~itSl~d~~~grE~ld~~~Grn~~GaNQfVlfdD~-----PL~WqAWDte~ysle~y~vl~k~k~v~v~ 795 (1078)
T KOG4342|consen 722 ILRVKID-PTGRITSLVDVASGREALDTAEGRNAVGANQFVLFDDV-----PLYWQAWDTEDYSLERYPVLGKAKTVAVG 795 (1078)
T ss_pred EEEEEEC-CCCceeeeeehhcccchhcccccccccCcccEEEecCC-----ccchhhhhhhhhceecceecCCCceEEee
Confidence 9999999 5899999999888888651 1567777643 6677888432111112222 33345777
Q ss_pred EeCCceEEEEEEE----cCeEEEEEEEEcCC-----CceeEEEEEccccccCCCCcEEEEEEEeeccCCCeEEEcCCccc
Q 002170 619 LRGPLLDEVHQRI----NPWIYQVTRVYKGK-----DHAEIEFTVGPIPIDDGIGKEVVTQITSNMISNKTFYTDSSGRD 689 (957)
Q Consensus 619 ~~G~l~~~v~~~~----~s~i~q~irLy~~~-----~~ie~e~~v~~i~~~~~~~~el~~~f~t~i~s~~~fytDsnG~~ 689 (957)
.+|+++..+.+.+ ++.++++|.|..+. +.|.|.++|+ |+ +.+|-+.|.|+.+|.|..+.|. .+|+
T Consensus 796 ~~g~lr~sv~v~~qISe~s~~k~~isL~~~~~~ak~~~V~f~teV~---Wh-e~~KFLKVEFPv~irs~fAsYE--tQFG 869 (1078)
T KOG4342|consen 796 TEGGLRGSVWVLLQISENSRLKQEISLDVGCTDAKLPYVRFHTEVH---WH-EAHKFLKVEFPVRIRSSFASYE--TQFG 869 (1078)
T ss_pred cCCCcceEEEEEEEcCcccccceEEEEecccccccCCceeeEEEEe---eh-hcCceEEeeccccccccchhhh--hhcc
Confidence 8999998877655 47889999997765 7899999984 65 6799999999999999888886 4677
Q ss_pred ceecccccccCcccccCCCcccceeeccceeeeEeCCceEEEEecCCccccccCCCeEEEEEEeeccCcCCcCccccccc
Q 002170 690 FIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDNSSELSILVDRSVGGSSIADGQLELMLHRRLVADDNRGVSEALNE 769 (957)
Q Consensus 690 ~ikR~~~~~~~w~~~~~~pv~~nyYP~~s~~~I~D~~~~ltvl~dr~~G~sS~~~G~ielml~Rr~~~dD~rGv~e~l~e 769 (957)
+.||++||+++|+.+.+|.+... +++.+|-..|++|||||+||. |.++.-|.|.|+|++..+|.-. |
T Consensus 870 itkRPTHYNTSWDvAkFEVchhk------faDySe~~~Gvs~LNDCKYGf-SthGnlmrLSLLRsPKaPDAhA------D 936 (1078)
T KOG4342|consen 870 ITKRPTHYNTSWDVAKFEVCHHK------FADYSEHGFGVSLLNDCKYGF-STHGNLMRLSLLRSPKAPDAHA------D 936 (1078)
T ss_pred cccCCccccccchhhHhHHHHhh------hhhhhhcccceeeeccccccc-ccccceeeehhhcCCCCCCccc------c
Confidence 99999999999999888876655 699999999999999999999 6999999999999999999754 3
Q ss_pred ccccccccCCeEEEeEEEEEecCccchh-hhcccchhhhccCceeeeeccCCCccccccccccccCcccccCCCcceEEE
Q 002170 770 TVCVFDKCEGLTIIGKYYLRIDPVGEAA-KWRRSFGQEIYSPFLLAFTEQDGDHWANSHLATYSAMDTTYVLPDNVALIT 848 (957)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lp~nv~l~t 848 (957)
.+ ++.++..+-+.+.+- +-.-+.++++++|.-+.....+.. ....|..+. .+-.+||.|-+
T Consensus 937 mG-----------~Hei~YA~yPH~g~lds~tv~aAh~fN~~fkl~lpa~~~a-----n~d~~dafs--vsgdpnViLs~ 998 (1078)
T KOG4342|consen 937 MG-----------RHEITYALYPHKGSLDSGTVQAAHSFNFPFKLALPAPSPA-----NADSWDAFS--VSGDPNVILST 998 (1078)
T ss_pred cC-----------cceEEEEeccCCCCCchhHHHHHHhcCCceeeccCCCCCC-----CCcccccee--ecCCchHHHHH
Confidence 21 222333333222111 011246788898885443333221 112233322 13458999999
Q ss_pred eeecCCC----cEEEEEeecccc-ccCCCCceeeeeeccccCCCCccceEEecccccchhhhHhhhcceeeeecCCCCCC
Q 002170 849 LQELDSG----KILLRLAHLYEI-EEDTDLSVMSSVELKKVFPKKKISKVTEMNLSANQERAVMEKKRLVWRVEGSSKEQ 923 (957)
Q Consensus 849 l~~~~~~----~~llRl~~~~~~-~~~~~~s~~~~v~l~~lf~~~~~~~i~E~sLt~~~~~~~~~~~r~~w~~~~~~~~~ 923 (957)
+|..+++ .|+|| +||. |... .+.+.+ .+++.++..+++.....-......
T Consensus 999 iK~aE~~~~~~SivlR---vYEslGg~s----~a~L~~-----sL~v~~~~kcd~LE~d~~~~lT~~------------- 1053 (1078)
T KOG4342|consen 999 IKQAESSPQRRSIVLR---VYESLGGHS----DAWLHL-----SLPVQEAIKCDLLERDPAGHLTSG------------- 1053 (1078)
T ss_pred hhhhccCcccceEEEE---ehhhcCCcc----eEEEEE-----eeehhHhhhccchhcChHhhCcCC-------------
Confidence 9988753 69999 7776 2221 233443 457777777777765332222110
Q ss_pred CcccCCCCCCCCCceEEecCcceeEEEEEE
Q 002170 924 PTAVRGSPVDPAKLVVELAPMEIRTFVIEF 953 (957)
Q Consensus 924 ~~~~~~~~~~~~~~~v~l~P~eIrTf~v~~ 953 (957)
..+..-....|+|+|+||.||.+++
T Consensus 1054 -----~~~~a~~~~pi~lrpfeiAsf~~~l 1078 (1078)
T KOG4342|consen 1054 -----QPPEAHLFSPISLRPFEIASFSATL 1078 (1078)
T ss_pred -----CCchhhhcCCcccceeeeeeeeecC
Confidence 0110001235889999999999864
No 6
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-52 Score=509.25 Aligned_cols=696 Identities=18% Similarity=0.188 Sum_probs=493.2
Q ss_pred ccccccccchhhhHHhHHHHHHhCCCCeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCHHH
Q 002170 8 FRFFFFVACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYID 87 (957)
Q Consensus 8 ~~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~es 87 (957)
|+.....+++.+.+.+++..|+..|.++|+.+.+. ++.|..+..|+..++ ++|+.|+|+++||+||.+|.++++||+
T Consensus 214 w~l~et~r~a~ts~~~~~~l~D~~p~~~~~~s~~~-~y~~l~~d~p~l~~~--~~v~~~~~~~~~g~~ve~d~n~~sGEs 290 (943)
T COG0383 214 WPLDETERKASTSFSLVMNLMDHYPVQKFVQSAAA-LYNWLKPDVPFLFSR--PAVEFEQWEIVGGMWVEEDLNTPSGES 290 (943)
T ss_pred ccHHHHHHHHhhhhhheecccccChhhhhhhhHHH-HHHHhcCccHHHhhc--ccccccceEEeecccccccCCccccch
Confidence 67777889999999999999999999999987666 567999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHHhhcCCcEEEEeecChHhHHhhhccCceEEEEeeCCCCCCC
Q 002170 88 MIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRASKSLGSS 167 (957)
Q Consensus 88 ~Irql~~G~~~l~~~fG~~p~v~W~~D~FGhS~~~p~il~~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~g 167 (957)
++||+.+|+||+.++||...++.|.||+||.|+++|||+ ..+|+++|+++++.|++.+.++++. |.|++.| |
T Consensus 291 lsrq~~~gq~~~~~~f~~ssri~w~pd~fg~s~~Lpqil-~p~gi~~f~t~klawn~tn~~Ph~~---~~w~~~d----g 362 (943)
T COG0383 291 LSRQFLYGQRFFTEKFGASSRIYWKPDSFGFSGQLPQIL-EPLGIDVFVTTKLAWNDTNRFPHDL---LRWRWKD----G 362 (943)
T ss_pred hhhhhhccceeeecccCccceeEeehhccccchhHHHHH-HhhcchhhhccccchhhccCCChhH---heeeccc----c
Confidence 999999999999999999999999999999999999999 9999999999999999999999976 9999999 9
Q ss_pred CceeEEeCCCCCCCCCCCCccccCCCCCCccCCcccccCChHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCcchhH-
Q 002170 168 AQIMTGISPKNYEPPSDNFYFEVGDTSPIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHT- 246 (957)
Q Consensus 168 s~i~th~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~- 246 (957)
+++++|..+.+++.. . + ....+++.. -.....|+.+| +++++.
T Consensus 363 ~e~~~hds~~~~~~d-------~---------------------v-~~~~~~r~~---~~~~~~~~~~g----~gd~ggg 406 (943)
T COG0383 363 TENLAHDSICGCSSD-------P---------------------V-HREMEYRFE---KINQVGLYLYG----YGDGGGG 406 (943)
T ss_pred cccceeecCCCCccc-------H---------------------H-HHHHHhhhh---hhccceeEEee----ccCCCCC
Confidence 999999976544321 0 0 011111111 13445677777 443321
Q ss_pred -HHHHHHHHHHHHhcCCCeEEEEcChhhHHHHHH----hcCCCCCcccC-CCccCCcCCCCceeeeeccchhhhHHHHHH
Q 002170 247 -WFRQMDKFIHYVNQDGRVNALYSTPSMYIDAKY----AANESWPLKTD-DFFPYADRENAYWTGYFTSRPALKGYVRTM 320 (957)
Q Consensus 247 -~~~~~~~li~~~N~~~~~~v~~sT~~~Yf~a~~----~~~~~~p~~~g-df~py~~~~~~yWtG~yTSr~~~K~~~R~~ 320 (957)
....+++.- ...+..+|.... ......|++.| +|+++|+ |+|||....|+++|.+
T Consensus 407 ~~~dm~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ely~E~hr-------g~~t~~~~~k~~~r~~ 467 (943)
T COG0383 407 PSIDMLENPE------------LPIAEGVFNTGVEKKTSTLELVPTWDGELYLELHR-------GTYTTQAKTKKLNRES 467 (943)
T ss_pred CCHHHHhccc------------cccccceeeecceeeeeecccccccchhhhhhccC-------ceeehhhhhhhhcccc
Confidence 112222110 122223332221 22356788855 7889999 9999999999999999
Q ss_pred HHHHHHHHHHHhhhc------cccCCCchHHHHHHHHhhhccccccCccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 002170 321 SAYYLAARQLEFFKG------RNEVGLSTDSLADALALVQHHDAVSGTEKQHVAD-DYAKRLSIGYTEAEKVVAASLACL 393 (957)
Q Consensus 321 e~~L~~aE~l~~la~------~~~~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~-dy~~rl~~a~~~~~~~~~~~l~~L 393 (957)
|..|+.+|.+.+++. ..++...++++|+.++++|+||+++||+...|+. +....+......+..++..+++.|
T Consensus 468 e~~l~d~e~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~qfhdvlpgs~i~~vy~~~a~~~~~~~~~~~~~i~~~~~~~l 547 (943)
T COG0383 468 EFLLEDAEGISVEAAIIEGDRVTYPYELLNELWKGLLLAQFHDVLPGSSIKEVYSYDALPLLEVVQKGASKIAELALKVL 547 (943)
T ss_pred ccceecccccchhhhhhccccccCchhhHHHHHHHhhhhhceeeccccceeeechhhHHHHHHhhhccchhhhhhhhhhh
Confidence 999999999888742 2456778899999999999999999999999999 998888888888888888888777
Q ss_pred hcccCCCCCCCCccccccCCcccccCCCCccccCCCCceEEEEEcCCCceeeEEEEEEEeCCcEEEEcCCCCEEEEEEee
Q 002170 394 TEFSKNGCVNPITNFQQCPLLNISYCPPSEVDLSSGKSLVVVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLP 473 (957)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~ln~s~c~~~~~~~~~~~~~~v~v~Npl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~ 473 (957)
.+. ....+.++|++.|.+. .++|.|..++.++.+.+.
T Consensus 548 ~~~---------------------------------~~e~~~~~~~~~~~~~----------~~~v~d~~~~~~~~~~~~ 584 (943)
T COG0383 548 SSQ---------------------------------CLENLFVKNTLSWNGI----------SLQVLDKTSGGIYTSQLT 584 (943)
T ss_pred hhc---------------------------------cccceEEEeeccCCcc----------eEEEEEcCCCceehhhhh
Confidence 331 1225789999999981 455666555544433221
Q ss_pred cccccccccccccccccCCCCCCCCcEEEEEEEeeCCCceEEEEEEeCCccCCccccceeeeccccCCCceEEccCeEEE
Q 002170 474 LLKDSMSLRNSYSTAYLGKSTNVTPSYWLAFSASVPPLGFNTYIISSAKQAASHSGMRTVYKSQIRQNDTIEVGPGNLKL 553 (957)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPplG~~~~~i~~~~~~~~~~~~s~~~~~~~~~~~~~~ieN~~~~v 553 (957)
...++|++|...++++..... ......+++..+.
T Consensus 585 ------------------------------~~ed~~~~g~~~i~~~~~~~~----------------~~~~~~~~~~~~~ 618 (943)
T COG0383 585 ------------------------------ALEDVGDIGNEYIYSQPTKTE----------------PETVIEEKEWKRL 618 (943)
T ss_pred ------------------------------hhhhcCCcccceeEecccccc----------------ccccccccchhee
Confidence 123688888888877332211 0122334444555
Q ss_pred EEECCCC-cEEEEEecccceeeEEEEEEEEeecCCCCCCCCCCcceEEccCCCC-ccCCCCCceEEEEeCCceEEEEEEE
Q 002170 554 LYSGKRA-KLMRYINSKTSVNKLLEQSYIYYRGDDGSKDLQPSGAYIFRPNGTY-PIEPEGQLSFTILRGPLLDEVHQRI 631 (957)
Q Consensus 554 ~~~~~~G-~l~si~dk~~g~~~~~~~~~~~Y~~~~g~~~~~~sgAYiF~P~~~~-~~~~~~~~~i~v~~G~l~~~v~~~~ 631 (957)
.++ ++| .+. .|... +..++||.-.+.... ...+.....-.+++|||+.++++..
T Consensus 619 ~~~-~~gn~~~------------------~~~~~-----~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (943)
T COG0383 619 IIN-DTGNQLA------------------LIEDE-----PAYWDAWNIDKFLEEELLALTALPEEAIENGPLVRTVRVSK 674 (943)
T ss_pred ecc-CCCccee------------------eeecc-----cceechhcchhhhhhhhhhhhccccchhccccceeeeeeee
Confidence 555 566 222 22211 334556655544322 2222222222359999999988765
Q ss_pred ---cCeEEEEEEEEcCCCceeEEEEEccccccCCCCcEEEEEEEeeccCCCeEEEcCCcccceecccccccCcccccCCC
Q 002170 632 ---NPWIYQVTRVYKGKDHAEIEFTVGPIPIDDGIGKEVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQP 708 (957)
Q Consensus 632 ---~s~i~q~irLy~~~~~ie~e~~v~~i~~~~~~~~el~~~f~t~i~s~~~fytDsnG~~~ikR~~~~~~~w~~~~~~p 708 (957)
.+.++|.|++++++++|+|++.|++. ..+|.++|.|+++++++.+ ..| -.|+.++|+++.+++|+..
T Consensus 675 ~~~~~~i~~~i~l~~~s~~l~~~t~vd~q----~~~~~lrv~fp~~~~s~~a-~~d-~~fg~v~Rp~~~~~~W~~a---- 744 (943)
T COG0383 675 ELTESTITQKVTLYKGSPRLDFKTEVDNQ----VRDHRLRVLFPTDIASDFA-TAD-IPFGVVERPTHPNTSWENA---- 744 (943)
T ss_pred eccceEEEEEEEEecCCceeEEEEEEEcc----ccceEEEEEecccccccce-ecc-ccceeeccCCCCchhhhcc----
Confidence 46789999999999999999999753 5789999999999999754 345 7899999999999999865
Q ss_pred cccceeeccceeeeEeCCce--EEEEecCCccccccCCCeEEEEEEeec-------cCcCCcCcccccccccccccccCC
Q 002170 709 IAGNYYPVNLGIYMKDNSSE--LSILVDRSVGGSSIADGQLELMLHRRL-------VADDNRGVSEALNETVCVFDKCEG 779 (957)
Q Consensus 709 v~~nyYP~~s~~~I~D~~~~--ltvl~dr~~G~sS~~~G~ielml~Rr~-------~~dD~rGv~e~l~e~~~~~~~~~~ 779 (957)
.+--|+..++++.|...| +++++||+||++ .+++.|.|+|+|.. .+||.-+ + |.|
T Consensus 745 --~~e~p~~~~vdls~~~~g~~vs~ln~~kYg~~-~~~~~l~lTLLrs~~~~gd~~~~P~p~A--------d-----~~g 808 (943)
T COG0383 745 --RFEVPLQKFVDLSDGEYGVTVSLLGDCKYGIS-THGNLLALTLLRSVGELGDWGYRPDPEA--------D-----CLG 808 (943)
T ss_pred --cCcchhhccccccCCccceeEeccCCcceeEe-ccCCEEEEEecccccccccccccCCchh--------h-----hcc
Confidence 445678899999999999 888999999995 69999999999999 7777643 1 222
Q ss_pred eEEEeEEEEEec--CccchhhhcccchhhhccCceeeeeccCCCccccccccccccCc-ccccCCCcceEEEeeecCCC-
Q 002170 780 LTIIGKYYLRID--PVGEAAKWRRSFGQEIYSPFLLAFTEQDGDHWANSHLATYSAMD-TTYVLPDNVALITLQELDSG- 855 (957)
Q Consensus 780 ~~~~~~~~l~~~--~~~~~~~~~r~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~lp~nv~l~tl~~~~~~- 855 (957)
. ++.+|.+.+. +...... ...++.++.|........+.. .......++... ....-|+++.|.++|+.+|+
T Consensus 809 ~-h~~~y~ly~h~~~~~~~~~--~~~a~~~~~P~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lsA~K~aed~~ 883 (943)
T COG0383 809 E-HEFTYALYPHQGSFLSAPT--AVRAYELNVPVRTVQVEEDGV--EGTLEATLDLLEPLLLVGPDNLILSALKRAEDGD 883 (943)
T ss_pred c-eeEEEEEEEccccccccch--hhhhhhccCceEEeecccccc--cccchhccccccccccCCCcceEEEeeeecccCC
Confidence 1 2334443332 2222221 234555666766554332110 000011121100 00135899999999999876
Q ss_pred cEEEEEeeccccccCCCCceeeeeeccccCCCCccce-EEecccccchhhhHhhhcceeeeecCCCCCCCcccCCCCCCC
Q 002170 856 KILLRLAHLYEIEEDTDLSVMSSVELKKVFPKKKISK-VTEMNLSANQERAVMEKKRLVWRVEGSSKEQPTAVRGSPVDP 934 (957)
Q Consensus 856 ~~llRl~~~~~~~~~~~~s~~~~v~l~~lf~~~~~~~-i~E~sLt~~~~~~~~~~~r~~w~~~~~~~~~~~~~~~~~~~~ 934 (957)
+++||+.+...... . .-+.+ .+.+.. ++||.|..+ +. ++..
T Consensus 884 ~~IlR~yn~~~~~~-~---~~~~~-------~l~~~~~~~~~~llE~----~~-----------------------~~~~ 925 (943)
T COG0383 884 GLILRLYNPSGTKT-L---ALIEL-------SLPVVNAIRETNLLEN----EN-----------------------ELET 925 (943)
T ss_pred ceEEEEeccCCCCc-c---eeeec-------cchhhhhhhhhhhhcc----cc-----------------------cccc
Confidence 79999776543222 1 01111 334555 778888766 10 0000
Q ss_pred CCceEEecCcceeEEEEE
Q 002170 935 AKLVVELAPMEIRTFVIE 952 (957)
Q Consensus 935 ~~~~v~l~P~eIrTf~v~ 952 (957)
+ ..|+.+|.||.||++.
T Consensus 926 ~-~~i~~~~~ei~t~k~~ 942 (943)
T COG0383 926 N-SPITPKPVEIVTLKLE 942 (943)
T ss_pred C-CcccccceEEEEEEee
Confidence 0 1577889999999986
No 7
>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=1.5e-51 Score=449.36 Aligned_cols=254 Identities=28% Similarity=0.477 Sum_probs=202.3
Q ss_pred cccccccchhhhHHhHHHHHHhCCCCeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCHHHH
Q 002170 9 RFFFFVACVQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDM 88 (957)
Q Consensus 9 ~~~~~~~~v~~il~~vl~~L~~~p~~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~es~ 88 (957)
++...+..+.++|+++++.|+++|++||+++|+.++++|| +..|+.++++|+||++||||||||||||+||+++++||+
T Consensus 17 t~~~~~~~~~~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~-~~~p~~~~~~~~lv~~Gri~~vgg~~~~~D~~l~~~Esl 95 (275)
T PF01074_consen 17 TFEEYRRYLVNILDSVLDLLEEDPDFRFIDGQTAYLEDYL-EDAPEEFKRIKKLVKEGRIEIVGGWYVQPDENLPSGESL 95 (275)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT--EECTBCHHHHHHH-HCSGHHHHHHHHHHHTTSEEESSSBSS-B-SSSS-HHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCcceEeechhHHHHHHH-HhCCHHHHHHHHHHHhceeEEeCceeeeccccCCCHHHH
Confidence 3344468999999999999999999999999999997666 559999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHHhhcCCcEEEEeecChHhHHhhhccCceEEEEeeCCCCCCCC
Q 002170 89 IDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQDRAKRINEKTLEVVWRASKSLGSSA 168 (957)
Q Consensus 89 Irql~~G~~~l~~~fG~~p~v~W~~D~FGhS~~~p~il~~~~G~~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~gs 168 (957)
||||++|++|++++||++|++||+||+||||+++|||| +++||++++++|++++.++.++....++|+|+|+| ||
T Consensus 96 irql~~G~~~~~~~fg~~~~~~~~~D~FG~~~~lP~il-~~~Gi~~~v~~r~~~~~~~~~~~~~~~~F~W~g~d----Gs 170 (275)
T PF01074_consen 96 IRQLLYGHKYLRKEFGVRPKVAWQPDSFGHSAQLPQIL-KQFGIKYFVIWRISWNDKNPFKANPQSEFYWQGPD----GS 170 (275)
T ss_dssp HHHHHHHHHHHHHHHTG--SEEEESSSSSB-TCHHHHH-HTTT-SEEEESSS-HHHHHHHHHTTSSEEEEE-TT----ST
T ss_pred HHHHhhhHHHHHHhcCCCCCeEEeCCCCCCchhhHHHH-hccCcceEEEeccccccccccccCCCceEEEecCC----Cc
Confidence 99999999999999999999999999999999999999 99999999999999999998877888999999999 99
Q ss_pred ceeEEeCCCCCCCCCCCCccccCCCCCCccCCcccccCChHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCcchhHHH
Q 002170 169 QIMTGISPKNYEPPSDNFYFEVGDTSPIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKYQYAHTWF 248 (957)
Q Consensus 169 ~i~th~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~y~~a~~~~ 248 (957)
+||||+++.+|..|..+. +. ++++.+++.+++.+..+.++++|+|+|+| ...+
T Consensus 171 ~ilt~~~~~~y~~~~~~~--------------------~~-~~~~~~~~~~~~~~~~~~~~~~l~~~G~d------~~~~ 223 (275)
T PF01074_consen 171 EILTHVLPNYYYGPWYGS--------------------EF-EDADELLEQLRKLAKKYYTNNILIPYGDD------DDGG 223 (275)
T ss_dssp EEEEEE-TST-TSHHTTC--------------------CH-HHHHHHHHHHHHHHCCSSSSEEEEEEEEE------HHHH
T ss_pred ceeEEecccCCCCCCCCc--------------------cc-ccHHHHHHHHHHHHHhcCCCceEEEeecC------CCCC
Confidence 999999999776530010 00 35678899999999999999999999988 1224
Q ss_pred HHHHHHHHHHh---c-CCCeEEEEcChhhHHHHHHhcCCCCCcc-cCCCccCC
Q 002170 249 RQMDKFIHYVN---Q-DGRVNALYSTPSMYIDAKYAANESWPLK-TDDFFPYA 296 (957)
Q Consensus 249 ~~~~~li~~~N---~-~~~~~v~~sT~~~Yf~a~~~~~~~~p~~-~gdf~py~ 296 (957)
..++++++++| + ...+++++||+++||++++++ .+||++ +|||+||+
T Consensus 224 ~~~~~~~~~i~~~~~~~~~~~i~~sT~~~yf~~l~~~-~~~p~~~~~df~~Y~ 275 (275)
T PF01074_consen 224 PPDEELIEYINEWNEEYPGPKIKYSTLSEYFEALEKE-SELPVHYHGDFPPYA 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHGCTEEEEE--HHHHHHHHHHC---B-EE-ES-B-S-E
T ss_pred CcHHHHHHHHHHhcccCCCeEEEECCHHHHHHHHHhc-cCCCcccCCCCCCCC
Confidence 45555666655 3 468999999999999999998 999999 99999995
No 8
>PF07748 Glyco_hydro_38C: Glycosyl hydrolases family 38 C-terminal domain; InterPro: IPR011682 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). This domain is found at the C terminus of glycosyl hydrolases from family 38.; GO: 0015923 mannosidase activity, 0006013 mannose metabolic process; PDB: 2WYI_A 2WYH_A 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....
Probab=100.00 E-value=3.9e-45 Score=429.57 Aligned_cols=429 Identities=29% Similarity=0.424 Sum_probs=286.3
Q ss_pred eEEEEEcCCCceeeEEEEEEEeCCcEEEEcCCCCEEEEEEeecccccccccccccccccCCCCCCCCcEEEEEEEeeCCC
Q 002170 432 LVVVVYNPLGWKREDIIRIPVINENVTVKDSKGKVIESQLLPLLKDSMSLRNSYSTAYLGKSTNVTPSYWLAFSASVPPL 511 (957)
Q Consensus 432 ~~v~v~Npl~~~r~~~V~i~v~~~~~~v~d~~g~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~f~~~vPpl 511 (957)
++|+|||||+|+|+++|+|+++.+.+.+.|..|++|++|+++... ....++|+|.++||||
T Consensus 1 ~~vvvfN~l~~~r~~vv~i~v~~~~~~~~~~~g~~v~~qi~~~~~-------------------~~~~~~l~f~~~vPal 61 (457)
T PF07748_consen 1 FPVVVFNPLPWPRSEVVEIPVNTPNVSVYDADGKPVPSQIIPEPY-------------------STGRYELLFVVDVPAL 61 (457)
T ss_dssp EEEEEEE-SSS-EEEEEEEEEEECEEEEECSTSHEEHCEEEEEEE-------------------EEEEEEEEEEEEE-TT
T ss_pred CEEEEEECCCCcEEEEEEEEeccCceEEEecCCcEeeEEEEeccC-------------------CCCceEEEEEeccCCc
Confidence 479999999999999999999999999999999999999998221 1235789998899999
Q ss_pred ceEEEEEEeCCccCCccccceeeeccccCCCceEEccCeEEEEEECCCCcEEEEEecccceeeE--EEEEEEEeecCCCC
Q 002170 512 GFNTYIISSAKQAASHSGMRTVYKSQIRQNDTIEVGPGNLKLLYSGKRAKLMRYINSKTSVNKL--LEQSYIYYRGDDGS 589 (957)
Q Consensus 512 G~~~~~i~~~~~~~~~~~~s~~~~~~~~~~~~~~ieN~~~~v~~~~~~G~l~si~dk~~g~~~~--~~~~~~~Y~~~~g~ 589 (957)
||++|.|............ .. ....+...|||++|+|+||+.+|.|.+|+||++|+++. ..+++..|.+..++
T Consensus 62 Gy~~~~i~~~~~~~~~~~~-~~----~~~~~~~~leN~~~~v~~~~~tG~i~sl~dk~~g~~~~~~~~~~~~~y~~~~~~ 136 (457)
T PF07748_consen 62 GYKTYRIVEGESSEPSNEA-SI----AKDSGDNVLENEFYKVTFDPNTGGIKSLYDKKTGREYVDQDGNDFYIYEDIDGD 136 (457)
T ss_dssp EEEEEEEEECSS--TTC---CE----EETT-TTEEETSSEEEEE-TTTSSEEEEEETTTS-EEEEEECEEEEEEEBTTSC
T ss_pred eeEEEEeeccccccccccc-ee----ecceeeEEEEccEEEEEEeCCCCeEEEEEEccCCeEEEeecCCceeEecccccc
Confidence 9999999987654332100 00 01114579999999999996669999999999999999 88899999765442
Q ss_pred C-----CCCCCcceEEccCCCCccCCCCCceEEEEeCC--ceEEEEEEEcCeEEEEEEEEcCCCceeEEEEEccccccCC
Q 002170 590 K-----DLQPSGAYIFRPNGTYPIEPEGQLSFTILRGP--LLDEVHQRINPWIYQVTRVYKGKDHAEIEFTVGPIPIDDG 662 (957)
Q Consensus 590 ~-----~~~~sgAYiF~P~~~~~~~~~~~~~i~v~~G~--l~~~v~~~~~s~i~q~irLy~~~~~ie~e~~v~~i~~~~~ 662 (957)
. +.+.+|+|.|.|++.....+.-...+. ..+. ++.++.....+.++++++||+++++|||++.|+|.+ .
T Consensus 137 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~-~p~~~~~~~~~~~~~~~~i~~~i~L~~~~~~ie~~~~vdn~~---~ 212 (457)
T PF07748_consen 137 YDISPLELQRSGAYLFVEDGPLRSSIRVEYKFE-LPKNLSLVKRSEQTGSSRITQTIRLYKGSPRIEFETEVDNWA---E 212 (457)
T ss_dssp TTE-SCCCGSEECCEEEEESSSEEEEEEEEEEE-EESCBECEEEESCEEEEEEEEEEEEETTESSEEEEEEEEE-T---T
T ss_pred ccccccccccCceEEEEecCCceEEEEEEEEEe-ccCCcEEEEEEEeccceEEEEEEEEecCceEEEEEEEecccc---c
Confidence 0 123578888887665310000000000 1111 223333334567999999999999999999998643 2
Q ss_pred CCc-EEEEEEEeeccCCCeEEEcCCcccceecccccccCcccccCCCcccceeeccceeeeEeCCceEEEEecCCccccc
Q 002170 663 IGK-EVVTQITSNMISNKTFYTDSSGRDFIERIRDYRKDWNLEVNQPIAGNYYPVNLGIYMKDNSSELSILVDRSVGGSS 741 (957)
Q Consensus 663 ~~~-el~~~f~t~i~s~~~fytDsnG~~~ikR~~~~~~~w~~~~~~pv~~nyYP~~s~~~I~D~~~~ltvl~dr~~G~sS 741 (957)
.++ +++++|+|+|.++..||+|++|+.+.+|+++. ..++++|||||.+.++|.|.+.+|+|+|||++|+++
T Consensus 213 ~~~~~l~~~f~t~i~~~~~~~~~~fG~~~r~~~~~~--------~~~~~~~~~p~~~~~~v~~~~~~l~i~~d~~~g~~~ 284 (457)
T PF07748_consen 213 DHRKELRVRFPTNIDSDEAFYDDQFGFIERKRPTHP--------NTPWEANYYPVPSHAFVDDSDSRLAILNDGKYGYES 284 (457)
T ss_dssp SCEEEEEEEEEES-S-TCEEEEESTTEEEEECESST--------TTTCGGG-EEECSCCEEEECSECEEEEESS-EEEEE
T ss_pred CCceeEEEEeecCCCCCCEEEECCCCeEEecCCccc--------cCCcccccCCCcceEEEEcCCCCEEEEcCCCcceEe
Confidence 233 79999999999999999998885544435543 356779999999999999999889999999999988
Q ss_pred cC-CCeEEEEEEeeccCcCCcCcccccccccccccccCCeEEEeEEEEEecCccchhhhcccchhhhccCceeeeeccCC
Q 002170 742 IA-DGQLELMLHRRLVADDNRGVSEALNETVCVFDKCEGLTIIGKYYLRIDPVGEAAKWRRSFGQEIYSPFLLAFTEQDG 820 (957)
Q Consensus 742 ~~-~G~ielml~Rr~~~dD~rGv~e~l~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~l~~p~~~~~~~~~~ 820 (957)
+. +|+|+|||||++..||++|+++ |.|.+...........+.+.++++|++++.....
T Consensus 285 ~~~~g~l~ltL~R~~~~D~g~~~~~--------------------~~l~~~~~~~~~~~~~~~a~~l~~Pl~~~~~~~~- 343 (457)
T PF07748_consen 285 LDQDGELELTLLRRPSQDDGRGVFR--------------------YALYPHSGSWDEADVVQEAYELNQPLIVFNSSNI- 343 (457)
T ss_dssp CTTTTEEEEEEEEEBSCG-SSSEEC--------------------CEEEEEEEEEEEEECHHCHHHHTS-EEEESS--T-
T ss_pred ccCCCeEEEEEeecccccCCccEEE--------------------EEEEEeccccccccchhhhhhccCccEEeecccc-
Confidence 87 9999999999999999999662 3333332211110012356799999988722111
Q ss_pred CccccccccccccCcc-cccCCCcceEEEe-----eecCCC-----cEEEEEeeccccccCCC--C-cee---eeeeccc
Q 002170 821 DHWANSHLATYSAMDT-TYVLPDNVALITL-----QELDSG-----KILLRLAHLYEIEEDTD--L-SVM---SSVELKK 883 (957)
Q Consensus 821 ~~~~~~~~~~~~~l~~-~~~lp~nv~l~tl-----~~~~~~-----~~llRl~~~~~~~~~~~--~-s~~---~~v~l~~ 883 (957)
.......++++.. ...+|+++|+.+| |..+++ .++||+.+......... + +.+ +++++.+
T Consensus 344 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sa~K~aed~~~~~~~~ilR~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (457)
T PF07748_consen 344 ---QARQLNSFSGLSLPPEESPLNIHLLNLVVSALKKAEDGSDWSDGLILRLYNPSGKETEASLDFLSKPLSGAEVNLVN 420 (457)
T ss_dssp ---TBEE--CE-TCS--SSEESTCECEEEEEEEEEEECTTTSEEETCEEEEEEESSSSTCCCTTCCTSCCTEEEEEEEES
T ss_pred ---ccccccCCCcccccccccccccCCCcccccccccccccccccCCEEEEEEecCCCccccccccCCccceeEEEEecc
Confidence 1111122333221 1236777776665 777665 69999776554433322 1 334 7778888
Q ss_pred cCCCCccceEEecccccchhhhHhhhcceeeeecCCCCCCCcccCCCCCCCCCceEEecCcceeEEE
Q 002170 884 VFPKKKISKVTEMNLSANQERAVMEKKRLVWRVEGSSKEQPTAVRGSPVDPAKLVVELAPMEIRTFV 950 (957)
Q Consensus 884 lf~~~~~~~i~E~sLt~~~~~~~~~~~r~~w~~~~~~~~~~~~~~~~~~~~~~~~v~l~P~eIrTf~ 950 (957)
+|....+..+.|+++++.... +...|+|+|||||||+
T Consensus 421 lle~~~~~~i~e~s~~~~~~~------------------------------~~~~~~l~P~EIkT~r 457 (457)
T PF07748_consen 421 LLEEPDIEEIEETSLSDPSES------------------------------NSVELTLKPFEIKTFR 457 (457)
T ss_dssp TTSSSCEEEEEEE-SEEEESC------------------------------GGTCSEE-TTEEEEEE
T ss_pred cccCCCccceEeeccCCCCCC------------------------------CEeEEEEeCcEEEEEC
Confidence 888888889999996542111 1236889999999996
No 9
>PF09261 Alpha-mann_mid: Alpha mannosidase, middle domain; InterPro: IPR015341 Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0008270 zinc ion binding; PDB: 1O7D_C 3LVT_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A 3BUQ_A ....
Probab=99.85 E-value=2.2e-22 Score=175.23 Aligned_cols=75 Identities=39% Similarity=0.541 Sum_probs=65.5
Q ss_pred CceeeeeccchhhhHHHHHHHHHHHHHHHHHhhhccc-----cCCCchHHHHHHHHhhhccccccCccchhhHHHHHHHH
Q 002170 301 AYWTGYFTSRPALKGYVRTMSAYYLAARQLEFFKGRN-----EVGLSTDSLADALALVQHHDAVSGTEKQHVADDYAKRL 375 (957)
Q Consensus 301 ~yWtG~yTSr~~~K~~~R~~e~~L~~aE~l~~la~~~-----~~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl 375 (957)
+||+|||||||.+|+++|++|++|+.||++++++... ++...++++|+.|+++||||+||||++++|++||.+||
T Consensus 1 e~~~G~~tSr~~~K~~~r~~e~~L~~~E~l~~~~~~~~~~~~~~~~~l~~~w~~l~~~q~HD~i~GT~~~~V~~d~~~rl 80 (80)
T PF09261_consen 1 EYWTGYYTSRPDIKQLNRRAENLLRAAEPLAALAALLGNGGDYPQEELEKAWKALLLNQFHDAITGTSIDSVYDDYLRRL 80 (80)
T ss_dssp EES-GGGCSTHHHHHHHHHHHHHHHCHHHHHHHCHHH--HSG-HHHHHHHHHHHHHCTTBTTTTTS-S-HHHHHHHHHHH
T ss_pred CCcceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCccccHHHHHHHHHHHHHhccCCCCCCcChHHHHHHHHHhC
Confidence 4899999999999999999999999999999986543 34567899999999999999999999999999999986
No 10
>smart00872 Alpha-mann_mid Alpha mannosidase, middle domain. Members of this entry belong to the glycosyl hydrolase family 38, This domain, which is found in the central region adopts a structure consisting of three alpha helices, in an immunoglobulin/albumin-binding domain-like fold. The domain is predominantly found in the enzyme alpha-mannosidase PUBMED:12634058.
Probab=99.82 E-value=1e-20 Score=164.28 Aligned_cols=74 Identities=38% Similarity=0.498 Sum_probs=67.6
Q ss_pred ceeeeeccchhhhHHHHHHHHHHHHHHHHHhhhc-----cccCCCchHHHHHHHHhhhccccccCccchhhHHHHHHHH
Q 002170 302 YWTGYFTSRPALKGYVRTMSAYYLAARQLEFFKG-----RNEVGLSTDSLADALALVQHHDAVSGTEKQHVADDYAKRL 375 (957)
Q Consensus 302 yWtG~yTSr~~~K~~~R~~e~~L~~aE~l~~la~-----~~~~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl 375 (957)
||+||||||+.+|+++|++|++|+.+|.+++++. ..++...++.+|+.|+++||||+||||++++|++||..|+
T Consensus 1 ~h~G~~Tsr~~~K~~~r~~E~~L~~~e~~~~~~~~~~~~~~~~~~~l~~~wk~ll~~q~HD~i~Gt~~~~V~~d~~~r~ 79 (79)
T smart00872 1 YHRGTYTSRPYLKRLNRRLESLLRAAEELAALAALLLLGYKYPSEQLEELWKALLLNQFHDAITGTSIDEVYDDYETRL 79 (79)
T ss_pred CCCceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCcccCCccCcHHHHHHHHHhC
Confidence 6899999999999999999999999999999864 2356667899999999999999999999999999999874
No 11
>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=3.2e-15 Score=184.32 Aligned_cols=335 Identities=13% Similarity=0.053 Sum_probs=231.6
Q ss_pred ccccchhhhHHhHHHHHHhCC-CCeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCHHHHHH
Q 002170 12 FFVACVQNVLDSLIPALVADK-NRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMID 90 (957)
Q Consensus 12 ~~~~~v~~il~~vl~~L~~~p-~~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~es~Ir 90 (957)
..+..+...++++++.++++| ...|..+.+....+.+....|+.+++++.+++.|++ .+|+++.+.|.+.+++|+.+|
T Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~d~qt~~l~d~l~v~~~~~~~~~~~~~~~~l-~ig~~~~~~~~~~~~~e~~~r 102 (943)
T COG0383 24 SHRILLDELFEEIIELLQKDPEFAGFHLDGQTIWLDDYLAVPPELKDRVKLLIASGKL-GIGPWYTQTDTFILSGESNVR 102 (943)
T ss_pred ceEeechhhhhhhhhccccCcccceecCccceeeeeeeEEecccchhhHHHHHhhcCc-cccCCCCeeEEEEecccccee
Confidence 344455666999999999999 445666654322234456789999999999999999 589999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHHhhcCCcEEEEeecChHh------HH---hhhccCceEEEEeeC
Q 002170 91 QTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGFDFLFFARIDYQD------RA---KRINEKTLEVVWRAS 161 (957)
Q Consensus 91 ql~~G~~~l~~~fG~~p~v~W~~D~FGhS~~~p~il~~~~G~~~~~~~R~~~~~------k~---~~~~~~~~eF~W~g~ 161 (957)
++++|..+.. .+|..++.||.+|.||+..++|+++ ..+||+.+.|+|+.-.. .. ......-.+..|.++
T Consensus 103 n~l~~~~~~~-~~~~~~~~g~~~d~~g~~~qa~~~~-~~~~i~~~~f~r~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~ 180 (943)
T COG0383 103 NLLIGEFDAE-RFGKAMKLGYFPDTFGNLGQAPQLY-ENAGISAVAFGRGAALIGFGQLVLFELLEAYGSDFSEITWSEP 180 (943)
T ss_pred eeecchHHHH-HhhhhhccccccccchhhhhhhHHH-HhcCCchhhcccccchhhcccchhhhhhhHhcCcCcccccccC
Confidence 9999999765 6779999999999999999999999 89999999999976311 00 011122346778888
Q ss_pred CCCCCCCceeEEeCCCCCCCCCCCCccccCCCCCCccCCcccccCChHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC
Q 002170 162 KSLGSSAQIMTGISPKNYEPPSDNFYFEVGDTSPIVQDDMNLFDYNVPERVNDFVSAAIAQANITRTNHIMWTMGTDFKY 241 (957)
Q Consensus 162 d~~~~gs~i~th~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~~~~~~~~~~~~~~~~t~~il~~~G~Df~y 241 (957)
+ |++++-+.++..|..+ .. ... ....-++-.+..-++..++ ...+..++++.|+|..+
T Consensus 181 ~----~~~~l~il~~~~y~~g-~~-----I~~---------~ghahid~aWlw~l~et~r---~a~ts~~~~~~l~D~~p 238 (943)
T COG0383 181 D----GSQVLGILLANGYSNG-NE-----IPA---------VGHAHIDTAWLWPLDETER---KASTSFSLVMNLMDHYP 238 (943)
T ss_pred C----chhhHHHHHHHHhhcc-cc-----ccc---------cchhhHHHHHhccHHHHHH---HHhhhhhheecccccCh
Confidence 8 8888888888877765 11 000 0001111111122222332 34666788999998854
Q ss_pred cchhHHHHHHHHHHHHHhcC-CCeEEEEcC----hhhHHHHHHhc-CCCCCcccCCCcc--CCcCCCCce--eeeeccch
Q 002170 242 QYAHTWFRQMDKFIHYVNQD-GRVNALYST----PSMYIDAKYAA-NESWPLKTDDFFP--YADRENAYW--TGYFTSRP 311 (957)
Q Consensus 242 ~~a~~~~~~~~~li~~~N~~-~~~~v~~sT----~~~Yf~a~~~~-~~~~p~~~gdf~p--y~~~~~~yW--tG~yTSr~ 311 (957)
. +.+....+++.|.- ......|+- ...|+...... ....++.+|+++. +..+ ..|. -..-+||.
T Consensus 239 ~-----~~~~~s~~~~y~~l~~d~p~l~~~~~v~~~~~~~~~g~~ve~d~n~~sGEslsrq~~~g-q~~~~~~f~~ssri 312 (943)
T COG0383 239 V-----QKFVQSAAALYNWLKPDVPFLFSRPAVEFEQWEIVGGMWVEEDLNTPSGESLSRQFLYG-QRFFTEKFGASSRI 312 (943)
T ss_pred h-----hhhhhhHHHHHHHhcCccHHHhhcccccccceEEeecccccccCCccccchhhhhhhcc-ceeeecccCcccee
Confidence 4 45666666666642 233333444 34444333221 1346788898864 1111 1111 13458999
Q ss_pred hhhHHHHHHHHHHH-HHHHHHh-------hhc---cccCCCchHHHHHHHHhhhccccccCccchhhHHHHHHHHHH
Q 002170 312 ALKGYVRTMSAYYL-AARQLEF-------FKG---RNEVGLSTDSLADALALVQHHDAVSGTEKQHVADDYAKRLSI 377 (957)
Q Consensus 312 ~~K~~~R~~e~~L~-~aE~l~~-------la~---~~~~~~~~~~lw~~l~~~QhHDaItGTs~~~V~~dy~~rl~~ 377 (957)
.+|..+...+..|- -+|++.. ++. ..+|...+.-.|+.++.++.||++|||+.+.|+.+...|...
T Consensus 313 ~w~pd~fg~s~~Lpqil~p~gi~~f~t~klawn~tn~~Ph~~~~w~~~dg~e~~~hds~~~~~~d~v~~~~~~r~~~ 389 (943)
T COG0383 313 YWKPDSFGFSGQLPQILEPLGIDVFVTTKLAWNDTNRFPHDLLRWRWKDGTENLAHDSICGCSSDPVHREMEYRFEK 389 (943)
T ss_pred EeehhccccchhHHHHHHhhcchhhhccccchhhccCCChhHheeecccccccceeecCCCCcccHHHHHHHhhhhh
Confidence 99999988888875 6677665 332 234566667789999999999999999999999999888765
No 12
>PF03065 Glyco_hydro_57: Glycosyl hydrolase family 57; InterPro: IPR004300 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 57 GH57 from CAZY comprises enzymes with two known activities; alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1 from EC).; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A 3N98_A 3N8T_A 3N92_A 1UFA_A 3P0B_A.
Probab=98.24 E-value=2.9e-06 Score=96.41 Aligned_cols=123 Identities=19% Similarity=0.222 Sum_probs=92.9
Q ss_pred hhhhHHhHHHHHHhCCCCeEEEeeHHHHHHHHhccCHHH-----------------------------------------
Q 002170 17 VQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEV----------------------------------------- 55 (957)
Q Consensus 17 v~~il~~vl~~L~~~p~~kF~~~e~~f~~~w~~~~~p~~----------------------------------------- 55 (957)
+.+.+--++..|++.|+.|++.+=...|-+|+++..+..
T Consensus 28 ~~~~Y~pll~~l~~~~~~k~t~~lSp~LleqL~d~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~l~~~~~ 107 (360)
T PF03065_consen 28 ATECYLPLLRLLERLPDFKLTFSLSPSLLEQLEDYAPQEYDQYLERSLARAELLREEKEFLLRANFTREDFERLLDFFRE 107 (360)
T ss_dssp HHHTHHHHHHHHHHHHH--EEEEE-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhCcCccEEEEECHHHHHHHHhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 455566778888888877777653222445777777777
Q ss_pred -----HHHHHHHHhCCCEEEEcceeeeeccCCCCH-HHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHHhh
Q 002170 56 -----QNVVKQLVNSGQLELINGGMCMHDEAAPHY-IDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAE 129 (957)
Q Consensus 56 -----~~~vk~LV~~Grle~vgGgwv~~Dea~~~~-es~Irql~~G~~~l~~~fG~~p~v~W~~D~FGhS~~~p~il~~~ 129 (957)
-+.+|+|+++|++|++|++|..+=-.+..- +++..|+..|.+.+++.||++|+..|.|. .+.+..+..++ +.
T Consensus 108 ~~~~ii~~~~~l~~~G~iEll~~~~~h~ilpl~~~~~d~~~Qi~~~~~~~~~~FG~~P~G~W~pE-~a~~~~l~~~l-~~ 185 (360)
T PF03065_consen 108 IIGDIIEAFRELAERGQIELLTSPYYHPILPLLPDPEDFRAQIEMGREYFKKHFGRRPRGFWLPE-CAYSPGLEEIL-AE 185 (360)
T ss_dssp TTT-HHHHHHHHHHTTSEEEEEE-TT-B-GGGSSHHHHHHHHHHHHHHHHHHHHSS--SBEE-GG-G-B-TTHHHHH-HH
T ss_pred hhhhhHHHHHHHHHCCCEEEEeCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCceECcc-cccCHHHHHHH-HH
Confidence 899999999999999999999998888888 99999999999999999999999999997 58899999999 89
Q ss_pred cCCcEEEEeecC
Q 002170 130 VGFDFLFFARID 141 (957)
Q Consensus 130 ~G~~~~~~~R~~ 141 (957)
+||+++++.--.
T Consensus 186 ~Gi~~~i~d~~~ 197 (360)
T PF03065_consen 186 AGIRYTILDGHQ 197 (360)
T ss_dssp TT--EEEEECHH
T ss_pred cCCEEEEECcHH
Confidence 999999987533
No 13
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.02 Score=64.29 Aligned_cols=92 Identities=16% Similarity=0.303 Sum_probs=80.6
Q ss_pred HHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCH-HHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhH
Q 002170 45 QRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHY-IDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQA 123 (957)
Q Consensus 45 ~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~-es~Irql~~G~~~l~~~fG~~p~v~W~~D~FGhS~~~p 123 (957)
...|++.+...-++||++.++|.+|+++.+.+-.---+-.. |++=-|+..|.+-..++||..|+--|+| --++...++
T Consensus 115 ~~~~e~~d~~ll~~f~~~~~~g~ieilts~athg~lPll~~peAi~AQi~~g~~~ye~~fg~~P~GiWlP-Ecay~pgie 193 (504)
T COG1543 115 RGYWEQYDGNLLEAFKELQRSGGIEILTSAATHGYLPLLGGPEAIEAQILTGIELYEEHFGLAPKGIWLP-ECAYAPGIE 193 (504)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCceeeeehhhheehhhcCCchhhHHHHHHHHHHHHHHhCCCCCceech-hhccccchH
Confidence 46888889999999999999999999998766544334444 8899999999999999999999999999 569999999
Q ss_pred HHHHhhcCCcEEEEe
Q 002170 124 YLLSAEVGFDFLFFA 138 (957)
Q Consensus 124 ~il~~~~G~~~~~~~ 138 (957)
.+| +.+||++++.-
T Consensus 194 ~~l-~~~Gi~yf~vd 207 (504)
T COG1543 194 RIL-KDAGIEYFFVD 207 (504)
T ss_pred HHH-HhcCceEEEec
Confidence 999 89999999986
No 14
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=95.88 E-value=0.097 Score=49.29 Aligned_cols=105 Identities=18% Similarity=0.303 Sum_probs=78.4
Q ss_pred hhhHHhHHHHHHhCC-CCeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCHHHHHHHHHHHH
Q 002170 18 QNVLDSLIPALVADK-NRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGH 96 (957)
Q Consensus 18 ~~il~~vl~~L~~~p-~~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~ 96 (957)
...+..+++.|+++. ..+|.... .+..+. .+.+++++++| +||.+=||.-++-...+.+.+.++|..+.
T Consensus 17 ~~~~~~~~~~l~~~~i~at~fv~~-~~~~~~--------~~~l~~l~~~G-~ei~~H~~~H~~~~~~~~~~~~~ei~~~~ 86 (123)
T PF01522_consen 17 RDNYDRLLPLLKKYGIPATFFVIG-SWVERY--------PDQLRELAAAG-HEIGNHGWSHPNLSTLSPEELRREIERSR 86 (123)
T ss_dssp HTHHHHHHHHHHHTT--EEEEE-H-HHHHHH--------HHHHHHHHHTT--EEEEE-SSSSCGGGS-HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccceeeeecc-cccccc--------cccchhHHHHH-HHHHhcCCcccccccCCHHHHHHHHHHHH
Confidence 567788999999985 23444332 223322 67899999999 99999999999999999999999999999
Q ss_pred HHHHHHcCCCCceeeecCCCCC-ChhhHHHHHhhcCCcEE
Q 002170 97 RYIKEQFNVTPRIGWQIDPFGH-SAVQAYLLSAEVGFDFL 135 (957)
Q Consensus 97 ~~l~~~fG~~p~v~W~~D~FGh-S~~~p~il~~~~G~~~~ 135 (957)
++|++.+|..|+ +-.=|||. +..+-+++ +++||++.
T Consensus 87 ~~l~~~~g~~~~--~f~~P~g~~~~~~~~~l-~~~G~~y~ 123 (123)
T PF01522_consen 87 EILEEITGRPPK--GFRYPFGSYDDNTLQAL-REAGYKYD 123 (123)
T ss_dssp HHHHHHHSSEES--EEE-GGGEECHHHHHHH-HHTT-EEE
T ss_pred HHHHHHhCCCCc--EEECCCCCCCHHHHHHH-HHcCCCcC
Confidence 999999999444 34468886 77788999 89999873
No 15
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=94.21 E-value=4.3 Score=44.75 Aligned_cols=112 Identities=18% Similarity=0.123 Sum_probs=84.1
Q ss_pred chhhhHHhHHHHHHhCCC-CeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCHHHHHHHHHH
Q 002170 16 CVQNVLDSLIPALVADKN-RKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTL 94 (957)
Q Consensus 16 ~v~~il~~vl~~L~~~p~-~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~es~Irql~~ 94 (957)
+.+.=+-.++++|+++-= -+|.... |+.+.+|+ .+|+++++| .||.+=||...+-..-+.+...++|..
T Consensus 74 G~rvG~~RiLdlL~~~gv~aTffv~g------~~~e~~P~---~v~~i~~~G-HEIg~Hg~~H~~~~~ls~~~e~~~i~~ 143 (297)
T TIGR03212 74 GSRAGFWRLLRLFTERGIPVTVFGVA------MALARNPE---AVAAMKEAG-WEIASHGLRWIDYQDMDEAQEREHIAE 143 (297)
T ss_pred cchhCHHHHHHHHHHcCCCEEEEeEH------HHHHHCHH---HHHHHHHcC-CEEeeccccCcccccCCHHHHHHHHHH
Confidence 344456678899998753 4565542 23355665 567777889 899999998887777788899999999
Q ss_pred HHHHHHHHcCCCCceeeecCCCCCChhhHHHHHhh-cCCcEEEEeecC
Q 002170 95 GHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAE-VGFDFLFFARID 141 (957)
Q Consensus 95 G~~~l~~~fG~~p~v~W~~D~FGhS~~~p~il~~~-~G~~~~~~~R~~ 141 (957)
+.+-|++..|.+| .||.. -.+|..++.|+ +. .||.+..-+..+
T Consensus 144 s~~~i~~~tG~~P-~G~~~--~~~s~~T~~LL-~e~~Gf~Y~sd~~~d 187 (297)
T TIGR03212 144 AIRLHTEVTGERP-LGWYT--GRTSPNTRRLV-AEEGGFLYDADSYAD 187 (297)
T ss_pred HHHHHHHHhCCCC-ceEEC--CCCChhHHHHH-HHhcCceEeCchhhc
Confidence 9999988888765 56753 36799999999 88 999987666554
No 16
>COG1449 Alpha-amylase/alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=92.63 E-value=3.4 Score=50.17 Aligned_cols=98 Identities=19% Similarity=0.268 Sum_probs=74.3
Q ss_pred EEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCC----CHHHHHHHHHHHHHHHHHHcCCCCceee
Q 002170 36 FIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAP----HYIDMIDQTTLGHRYIKEQFNVTPRIGW 111 (957)
Q Consensus 36 F~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~----~~es~Irql~~G~~~l~~~fG~~p~v~W 111 (957)
|+++...-+-.+-..-.++.-+.+|++++.|+.|++.--|--+=-.+- -+++.++|+..+....++-||+.|+..|
T Consensus 162 ys~~g~~~il~~~~~~~~~vl~~~r~l~e~g~~e~~~~pyyHsl~pl~~d~gw~~d~~~qv~~~~~~~~elfG~~p~~~~ 241 (615)
T COG1449 162 YSLSGGETILEQQLDEAPRVLEAFRELAESGKVELTASPYYHSLIPLLADDGWYEDFKEQVMMSRELYKELFGVWPSGFW 241 (615)
T ss_pred eeccccHHHHHHHHHHHhhhHHHHHHHHhcCceEEEecccccccchhcccCCchHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 566541112123334468889999999999999998866644433322 4459999999999999999999999999
Q ss_pred ecCCCCCChhhHHHHHhhcCCcEE
Q 002170 112 QIDPFGHSAVQAYLLSAEVGFDFL 135 (957)
Q Consensus 112 ~~D~FGhS~~~p~il~~~~G~~~~ 135 (957)
.+- +=.+.++..++ +.+|+...
T Consensus 242 ~tE-l~y~~~i~~~~-~e~G~~~~ 263 (615)
T COG1449 242 NTE-LAYNDQILEYF-EESGFSWI 263 (615)
T ss_pred Chh-hhccHHHHHHH-HHcCCccc
Confidence 864 56788999999 89999953
No 17
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=92.36 E-value=1.6 Score=44.73 Aligned_cols=102 Identities=14% Similarity=0.234 Sum_probs=78.4
Q ss_pred HHhHHHHHHhCCC-CeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCHHHHHHHHHHHHHHH
Q 002170 21 LDSLIPALVADKN-RKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYI 99 (957)
Q Consensus 21 l~~vl~~L~~~p~-~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l 99 (957)
...+++.|+++.- .+|..... |. +.+| +.+|+++++|- ||-+-+|.-++-...+.+.+.+++..+.+.|
T Consensus 21 t~~~l~~L~~~~ikaTfFv~g~-----~~-~~~~---~~~~~i~~~Gh-eig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l 90 (191)
T TIGR02764 21 TEPILDTLKEYDVKATFFLSGS-----WA-ERHP---ELVKEIVKDGH-EIGSHGYRHKNYTTLEDEKIKKDILRAQEII 90 (191)
T ss_pred HHHHHHHHHHcCCCEEEEeccH-----HH-HHCH---HHHHHHHhCCC-EEEECCcCCCCcccCCHHHHHHHHHHHHHHH
Confidence 3567888988853 35554432 22 2344 57889999995 7999999998888888999999999999999
Q ss_pred HHHcCCCCceeeecCCCCC-ChhhHHHHHhhcCCcEE
Q 002170 100 KEQFNVTPRIGWQIDPFGH-SAVQAYLLSAEVGFDFL 135 (957)
Q Consensus 100 ~~~fG~~p~v~W~~D~FGh-S~~~p~il~~~~G~~~~ 135 (957)
++..|..|+ |--=|+|. +..+.+++ ++.|+..+
T Consensus 91 ~~~~g~~~~--~fr~P~G~~~~~~~~~l-~~~G~~~v 124 (191)
T TIGR02764 91 EKLTGKKPT--LFRPPSGAFNKAVLKAA-ESLGYTVV 124 (191)
T ss_pred HHHhCCCCC--EEECCCcCCCHHHHHHH-HHcCCeEE
Confidence 999998876 45567775 67778888 89999843
No 18
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=92.27 E-value=1.1 Score=48.53 Aligned_cols=114 Identities=16% Similarity=0.246 Sum_probs=84.6
Q ss_pred cccchhhhHHhHHHHHHhCC-CCeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCHHHHHHH
Q 002170 13 FVACVQNVLDSLIPALVADK-NRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQ 91 (957)
Q Consensus 13 ~~~~v~~il~~vl~~L~~~p-~~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~es~Irq 91 (957)
....|...+..+++.|+++. .-+|.... |+.+.+| +.||+++++| .||.+=||.-.+-..-+.+.+..+
T Consensus 22 ~~~rv~~nt~riL~lL~~~gikATFFv~g------~~~e~~p---~lir~i~~~G-hEIgsHg~sH~~l~~ls~ee~~~e 91 (265)
T TIGR03006 22 LPCRVERNTDRILDLLDRHGVKATFFTLG------WVAERYP---ELVRRIVAAG-HELASHGYGHERVTTQTPEAFRAD 91 (265)
T ss_pred ccchHHHhHHHHHHHHHHcCCcEEEEEec------cchhhCH---HHHHHHHHcC-CEeeeccccCcCchhCCHHHHHHH
Confidence 34567778889999999986 34566542 3334555 4599999999 699999998887777788999999
Q ss_pred HHHHHHHHHHHcCCCCceeeecCCCCCCh---hhHHHHHhhcCCcEEEEe
Q 002170 92 TTLGHRYIKEQFNVTPRIGWQIDPFGHSA---VQAYLLSAEVGFDFLFFA 138 (957)
Q Consensus 92 l~~G~~~l~~~fG~~p~v~W~~D~FGhS~---~~p~il~~~~G~~~~~~~ 138 (957)
+....+.|++..|..|+ ||-.=.+..+. ....++ +++||.+..-.
T Consensus 92 I~~s~~~Le~itG~~~~-gfRaP~~s~~~~t~~a~~iL-~e~Gy~YdsS~ 139 (265)
T TIGR03006 92 IRRSKALLEDLSGQPVR-GYRAPSFSIGKKNLWALDVL-AEAGYRYSSSI 139 (265)
T ss_pred HHHHHHHHHHHhCCCce-EEECCCCCCCCCcHHHHHHH-HHCCCEEEEee
Confidence 99999999988888766 56433333333 346899 89999986554
No 19
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=91.97 E-value=1.6 Score=46.02 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=79.4
Q ss_pred HHhHHHHHHhCCC-CeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCHHHHHHHHHHHHHHH
Q 002170 21 LDSLIPALVADKN-RKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYI 99 (957)
Q Consensus 21 l~~vl~~L~~~p~-~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l 99 (957)
...+++.|+++.= .+|..... |. +..| +.+|+++++|- ||-+-+|.-++-...+.+.+.++|....+.|
T Consensus 52 t~~lL~~L~~~~vkATFFv~G~-----~~-~~~p---~~ir~i~~~Gh-eIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i 121 (224)
T TIGR02884 52 TPKILDVLKEKKVPAAFFVTGH-----YI-KTQP---DLIKRMVDEGH-IVGNHSVHHPSLTAVNDEKFKEELTGVEEEF 121 (224)
T ss_pred hHHHHHHHHHcCCCeEEEeech-----hh-HHCH---HHHHHHHHcCC-EeeecCccCcCcccCCHHHHHHHHHHHHHHH
Confidence 3468899998853 35655432 33 2344 57899999995 6888899988888888999999999999999
Q ss_pred HHHcCCCCceeeecCCCCC-ChhhHHHHHhhcCCcEE
Q 002170 100 KEQFNVTPRIGWQIDPFGH-SAVQAYLLSAEVGFDFL 135 (957)
Q Consensus 100 ~~~fG~~p~v~W~~D~FGh-S~~~p~il~~~~G~~~~ 135 (957)
++..|..+ ..|.-=|+|. +..+.+++ +++|+..+
T Consensus 122 ~~~~G~~~-~~~fR~P~G~~~~~~~~~l-~~~Gy~~v 156 (224)
T TIGR02884 122 KKVTGQKE-MKYFRPPRGVFSERTLAYT-KELGYYTV 156 (224)
T ss_pred HHHhCCCC-CCEEeCCCCCcCHHHHHHH-HHcCCcEE
Confidence 99889762 3377778994 77889999 89999854
No 20
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=89.42 E-value=4 Score=44.30 Aligned_cols=101 Identities=21% Similarity=0.362 Sum_probs=79.8
Q ss_pred HHhHHHHHHhCC-CCeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCHHHHHHHHHHHHHHH
Q 002170 21 LDSLIPALVADK-NRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYI 99 (957)
Q Consensus 21 l~~vl~~L~~~p-~~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l 99 (957)
...+++.|.++. ..+|.... .|. +.+| +.+|+++++|- ||-+=+|.-++-..-+.+.+.++|..+.+.+
T Consensus 100 t~~iL~iLkk~~vkATFFv~G-----~~i-~~~p---~l~k~i~~~Gh-eIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~i 169 (268)
T TIGR02873 100 LPEILQILKKHDVKATFFLEG-----KWV-KENS---QLAKMIVEQGH-EIGNHAYNHPDMATLSKEEIYDQINQTNEII 169 (268)
T ss_pred HHHHHHHHHHCCCCEEEEeeh-----Hhh-hHCH---HHHHHHHHCCC-EEEecCCcCCCcccCCHHHHHHHHHHHHHHH
Confidence 346889999886 34666653 233 3345 35788899995 7889999988888888999999999999999
Q ss_pred HHHcCCCCceeeecCCCCC-ChhhHHHHHhhcCCcE
Q 002170 100 KEQFNVTPRIGWQIDPFGH-SAVQAYLLSAEVGFDF 134 (957)
Q Consensus 100 ~~~fG~~p~v~W~~D~FGh-S~~~p~il~~~~G~~~ 134 (957)
++..|..|+ |.-=|+|. +..+-+++ +.+|+..
T Consensus 170 ~~~~G~~p~--~fRpP~G~~n~~~~~~l-~~~G~~~ 202 (268)
T TIGR02873 170 EATIGVTPK--WFAPPSGSFNDNVVQIA-ADLQMGT 202 (268)
T ss_pred HHHhCCCCC--EEECCCCCCCHHHHHHH-HHCCCeE
Confidence 999999877 67678987 57788888 8999864
No 21
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=80.83 E-value=80 Score=38.88 Aligned_cols=184 Identities=16% Similarity=0.289 Sum_probs=113.3
Q ss_pred hhhHHhHHHHHHhCC-CCeEEEeeHHHHHHHHhccCHH----------------HHHHHHHHHhCCCEEEEcceeeeecc
Q 002170 18 QNVLDSLIPALVADK-NRKFIYVEQAFFQRWWRDQSEE----------------VQNVVKQLVNSGQLELINGGMCMHDE 80 (957)
Q Consensus 18 ~~il~~vl~~L~~~p-~~kF~~~e~~f~~~w~~~~~p~----------------~~~~vk~LV~~Grle~vgGgwv~~De 80 (957)
...+..++..|+++- ..+|..+. .|+.. .+. ..+.||+++++|-+||-+=+|..|.-
T Consensus 118 ~s~yt~A~PILkkygvpATfFlvg-----~wi~~-~~~~~~~~~~~~~~r~~~LtWeqIreM~~sGlvEIGSHT~~sH~~ 191 (671)
T PRK14582 118 SSFYTRVFPILQAFQWPAVWAPVG-----SWVDT-PADQPVKFGGEMVPREYFATWQQVREVARSRLVEIASHTWNSHYG 191 (671)
T ss_pred CchHHHHHHHHHHcCCCEEEEEec-----hhhcc-CccccccccccccccccCCCHHHHHHHHhCCCeEEEcCCchhccc
Confidence 345567888888773 12333321 35532 221 13689999999999987788865531
Q ss_pred C--------------------CCCHH-------HHHHHHHHHHHHHHHHcCCCCceeeecCCCCC-ChhhHHHHHhhcCC
Q 002170 81 A--------------------APHYI-------DMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGH-SAVQAYLLSAEVGF 132 (957)
Q Consensus 81 a--------------------~~~~e-------s~Irql~~G~~~l~~~fG~~p~v~W~~D~FGh-S~~~p~il~~~~G~ 132 (957)
. ...|| .+.+.+....+.|++..|..|++ ..=|||+ +...-.+. +++||
T Consensus 192 l~anp~g~~~pa~~~r~~~~~~~~yEs~~e~~~ri~~DL~~s~~~Ie~~tG~~p~~--FayPyG~~n~~~~~ia-keaGY 268 (671)
T PRK14582 192 IQANPQGSLLPAAVNRAYFTDHARYETAAEYRERIRLDAVKMTEYIRTKAGKNPRV--WVWPYGEANGIALEEL-KKLGY 268 (671)
T ss_pred cccccccccccchhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCcE--EecCCCCCCHHHHHHH-HHCCC
Confidence 1 11222 26678999999999999998875 5678995 67788999 89999
Q ss_pred cEEEEeecChHhHHhhhccCceEEEEeeCCCCCCCCceeEEeCCCCCCCCCCCCccccCCCCCCccCCcccccCChHHHH
Q 002170 133 DFLFFARIDYQDRAKRINEKTLEVVWRASKSLGSSAQIMTGISPKNYEPPSDNFYFEVGDTSPIVQDDMNLFDYNVPERV 212 (957)
Q Consensus 133 ~~~~~~R~~~~~k~~~~~~~~~eF~W~g~d~~~~gs~i~th~~~~~Y~~p~~~f~f~~~~~~~~~~~~~~~~~~nv~~~~ 212 (957)
+..+..+-.... .+.. |..| + + ... .++ . +
T Consensus 269 ~~afT~~~G~~~----------------------~~~~--------~~Lp-R-i--~I~-------~~~-----s----l 298 (671)
T PRK14582 269 DMAFTLESGLAN----------------------ASQL--------DSIP-R-V--LIA-------NNP-----S----L 298 (671)
T ss_pred eEEEEeCCCCCC----------------------CCCc--------Cccc-e-E--Eec-------CCC-----C----H
Confidence 988776533110 0000 1111 0 0 000 001 1 2
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCCC-cchhHHHHHHHHHHHHHhcCC
Q 002170 213 NDFVSAAIAQANITRTNHIMWTMGTDFKY-QYAHTWFRQMDKFIHYVNQDG 262 (957)
Q Consensus 213 ~~~~~~~~~~~~~~~t~~il~~~G~Df~y-~~a~~~~~~~~~li~~~N~~~ 262 (957)
+.|...+... ......+++-.+-|+-| .++..+-++++.+|+.+.+.+
T Consensus 299 ~~f~~~v~~~--~~~~~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G 347 (671)
T PRK14582 299 KEFAQQIITV--QEKSPQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQ 347 (671)
T ss_pred HHHHHHHhcc--cCCCCEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcC
Confidence 3455444321 23555677888888888 466667899999999988754
No 22
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=66.70 E-value=6.9 Score=31.90 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCCCEEEEccee
Q 002170 53 EEVQNVVKQLVNSGQLELINGGM 75 (957)
Q Consensus 53 p~~~~~vk~LV~~Grle~vgGgw 75 (957)
++.++-+-++|++|+||++||-|
T Consensus 36 ~eL~~fL~~lv~e~~L~~~~G~Y 58 (60)
T PF08672_consen 36 EELQEFLDRLVEEGKLECSGGSY 58 (60)
T ss_dssp HHHHHHHHHHHHTTSEE--TTEE
T ss_pred HHHHHHHHHHHHCCcEEecCCEE
Confidence 45667788999999999999987
No 23
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=62.86 E-value=27 Score=42.86 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=80.7
Q ss_pred hhhHHhHHHHHHhCCC-CeEEEeeHHHHHHHHhccCHH----------------HHHHHHHHHhCCCEEEEcceeeeecc
Q 002170 18 QNVLDSLIPALVADKN-RKFIYVEQAFFQRWWRDQSEE----------------VQNVVKQLVNSGQLELINGGMCMHDE 80 (957)
Q Consensus 18 ~~il~~vl~~L~~~p~-~kF~~~e~~f~~~w~~~~~p~----------------~~~~vk~LV~~Grle~vgGgwv~~De 80 (957)
...+..++..|+++-- .+|..+. .|+... +. ..+.||+++++|-+||-+=+|..+.-
T Consensus 118 ~sny~~AlPILKkyg~pATfFvVg-----~wid~~-~~~~v~~~~~~~~r~~~LTW~qIrEM~~sGLvEIGSHT~sHh~~ 191 (672)
T PRK14581 118 SSFYRRVYPLLKAYKWSAVLAPVG-----TWIDTA-TDKKVDFGGLSTDRDRFATWKQITEMSKSGLVEIGAHTYASHYG 191 (672)
T ss_pred cchHHHHHHHHHHcCCCEEEEEec-----hhhccC-cccccccccccccccccCCHHHHHHHHHCCCcEEEcCCcccccc
Confidence 4567788888988842 2333221 355332 21 23689999999999988888877631
Q ss_pred --------------------CCCCHHH-------HHHHHHHHHHHHHHHcCCCCceeeecCCCCC-ChhhHHHHHhhcCC
Q 002170 81 --------------------AAPHYID-------MIDQTTLGHRYIKEQFNVTPRIGWQIDPFGH-SAVQAYLLSAEVGF 132 (957)
Q Consensus 81 --------------------a~~~~es-------~Irql~~G~~~l~~~fG~~p~v~W~~D~FGh-S~~~p~il~~~~G~ 132 (957)
....+|+ +-+.+....+.|++..|..|+. ..=|||+ +...-+++ +++||
T Consensus 192 ~~~np~g~~~pa~~~~~y~~~~~~yEs~~~~~~rl~~Di~~s~~~Ie~~lG~~p~~--FayPyG~yn~~~~~ia-k~aGy 268 (672)
T PRK14581 192 VIANPQGNTEPAAANLQYDPKTKQYETVEAFKQRMEKDVALITQRIVQATGKQPRV--WVWPYGAPNGTVLNIL-RQHGY 268 (672)
T ss_pred cccCccccccchhhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHhCCCCCE--EEcCCCCcCHHHHHHH-HHCCC
Confidence 1223443 5566888889999999998874 5578995 78889999 89999
Q ss_pred cEEEEeecC
Q 002170 133 DFLFFARID 141 (957)
Q Consensus 133 ~~~~~~R~~ 141 (957)
+..++.+-.
T Consensus 269 ~~afTt~~G 277 (672)
T PRK14581 269 QLAMTLDPG 277 (672)
T ss_pred cEEEECCCC
Confidence 998876643
No 24
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=61.18 E-value=2.6e+02 Score=30.84 Aligned_cols=81 Identities=11% Similarity=0.027 Sum_probs=61.4
Q ss_pred HHHHHHHhCCCEEEEcceeeee----ccCCCCHHHHHHHHHHHHHHHHHHcCCCCceeeecCCCCCChhhHHHHHhhcCC
Q 002170 57 NVVKQLVNSGQLELINGGMCMH----DEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQIDPFGHSAVQAYLLSAEVGF 132 (957)
Q Consensus 57 ~~vk~LV~~Grle~vgGgwv~~----Dea~~~~es~Irql~~G~~~l~~~fG~~p~v~W~~D~FGhS~~~p~il~~~~G~ 132 (957)
+.+|+.+++ .|+.+=||.-. ....-+.+.+.++|..+.+-|++-.|..|+ ||-+=.+-.+..+..++ +.+||
T Consensus 92 ~lvr~i~~~--HEIG~Hg~~H~~wq~~~~~ls~~e~~~eI~ra~~~Le~itG~~p~-g~raPgw~~~~~tl~ll-~e~Gf 167 (296)
T PRK15394 92 DIIREAAKA--HEVGLHAWDHHAWQAWSGVWSRQQLIEQIARGVDALEEIIGQPVT-CSAAAGWRADQRVVEAK-EAFGF 167 (296)
T ss_pred HHHHHHHhc--CEehhcccCccchhcccccCCHHHHHHHHHHHHHHHHHHhCCCCC-EEeCCCccCCHHHHHHH-HHcCC
Confidence 457777777 99877788755 234557788999999999999998887754 56655555678889999 89999
Q ss_pred cEEEEeecC
Q 002170 133 DFLFFARID 141 (957)
Q Consensus 133 ~~~~~~R~~ 141 (957)
.|---.|.+
T Consensus 168 ~Y~Ss~~~d 176 (296)
T PRK15394 168 RYNSDCRGT 176 (296)
T ss_pred eeecCCCCC
Confidence 997544443
No 25
>PF07481 DUF1521: Domain of Unknown Function (DUF1521); InterPro: IPR011086 This domain of unknown function is found in a limited set of Bradyrhizobium proteins. There appears to be a periodic -DG- motif in the domain.
Probab=51.48 E-value=1.2e+02 Score=29.90 Aligned_cols=95 Identities=9% Similarity=0.038 Sum_probs=52.5
Q ss_pred CceEEc-cCeEEEEEECCCCcEEEEEecccceeeEEEEEEEEeecCCCCCCCCCCcceEEccCCCCccCCCCCceEEEEe
Q 002170 542 DTIEVG-PGNLKLLYSGKRAKLMRYINSKTSVNKLLEQSYIYYRGDDGSKDLQPSGAYIFRPNGTYPIEPEGQLSFTILR 620 (957)
Q Consensus 542 ~~~~ie-N~~~~v~~~~~~G~l~si~dk~~g~~~~~~~~~~~Y~~~~g~~~~~~sgAYiF~P~~~~~~~~~~~~~i~v~~ 620 (957)
+.-+|+ ++.|+|.++.+++.+. |++|++|....+--+-.+.. +++...+|+|.-+. .+.+....+|.|..
T Consensus 8 gkati~lgd~Y~I~~~e~ds~~~-itnk~tG~~TriwGDPHvd~------~Gdg~~~fDFk~~~--tf~L~DGTKItV~T 78 (171)
T PF07481_consen 8 GKATIDLGDGYTIEANEKDSEWT-ITNKQTGETTRIWGDPHVDA------DGDGKTDFDFKGDM--TFQLDDGTKITVDT 78 (171)
T ss_pred CeeEEecCCceEEEecCCcceEE-EecCCCCcEeEEeCCCcccc------CCCcccceeecCce--EEEeCCCCEEEEee
Confidence 445677 7889999997788984 99999999876543322211 12233468886432 34444434555432
Q ss_pred CCceEEEEEEEcCeEEEEEEEEcCCCceeEE
Q 002170 621 GPLLDEVHQRINPWIYQVTRVYKGKDHAEIE 651 (957)
Q Consensus 621 G~l~~~v~~~~~s~i~q~irLy~~~~~ie~e 651 (957)
=|.-. ...+...+.+.++...+.++
T Consensus 79 ~p~gn------g~T~askLtIt~Gd~~~~V~ 103 (171)
T PF07481_consen 79 VPWGN------GMTYASKLTITNGDNAWQVE 103 (171)
T ss_pred eecCC------CcEEeeeEEEEcCCceEEEe
Confidence 22111 11223344555666655554
No 26
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=50.70 E-value=8.5 Score=37.02 Aligned_cols=49 Identities=14% Similarity=0.292 Sum_probs=37.4
Q ss_pred hhhhHHhHHHHHHhCCCCeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEc
Q 002170 17 VQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELIN 72 (957)
Q Consensus 17 v~~il~~vl~~L~~~p~~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vg 72 (957)
...-|..|-+.|.++|.+.-+..|++ +...-..+.|.++|++|||++.+
T Consensus 28 ~e~~f~kV~~yLr~~p~~~ati~eV~-------e~tgVs~~~I~~~IreGRL~~~~ 76 (137)
T TIGR03826 28 EEREFEKVYKFLRKHENRQATVSEIV-------EETGVSEKLILKFIREGRLQLKH 76 (137)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHH-------HHHCcCHHHHHHHHHcCCeeccC
Confidence 35678889999999999887776665 22333456899999999999865
No 27
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=36.04 E-value=2.6e+02 Score=30.09 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=20.8
Q ss_pred eEEccCeEEEEEECCCCcEEEEEecc
Q 002170 544 IEVGPGNLKLLYSGKRAKLMRYINSK 569 (957)
Q Consensus 544 ~~ieN~~~~v~~~~~~G~l~si~dk~ 569 (957)
++|||+.++++|+...|.|+++.-|+
T Consensus 2 v~ven~~~~~~~s~~GG~i~~~~Lk~ 27 (270)
T PF14849_consen 2 VTVENDLFKVTFSSKGGRIKSVELKK 27 (270)
T ss_dssp EEEE-SS-EEEEETBTTEEEEEEEEE
T ss_pred EEEECCCEEEEEECCCCeEEEEEcCC
Confidence 68999999999998899999887653
No 28
>PRK10148 hypothetical protein; Provisional
Probab=30.81 E-value=18 Score=35.31 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.8
Q ss_pred CceeeecCCCCCChhhH
Q 002170 107 PRIGWQIDPFGHSAVQA 123 (957)
Q Consensus 107 p~v~W~~D~FGhS~~~p 123 (957)
++.||..|+||++|++-
T Consensus 123 ~~~g~v~D~fGi~W~l~ 139 (147)
T PRK10148 123 HGFGKVTDKFGVPWMIN 139 (147)
T ss_pred hccEEEECCCCCEEEEE
Confidence 47899999999999764
No 29
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=29.87 E-value=3.4e+02 Score=30.80 Aligned_cols=30 Identities=20% Similarity=0.075 Sum_probs=24.7
Q ss_pred CCceEEccCeEEEEEECCCCcEEEEEeccc
Q 002170 541 NDTIEVGPGNLKLLYSGKRAKLMRYINSKT 570 (957)
Q Consensus 541 ~~~~~ieN~~~~v~~~~~~G~l~si~dk~~ 570 (957)
...++|+|+.++++|+...|.|.++.-|+-
T Consensus 73 ~~~i~v~td~~~~~is~~Gg~i~~~~Lk~y 102 (366)
T TIGR03593 73 AKRITVKTDVLRASISTKGGDIDSLELKKY 102 (366)
T ss_pred CCeEEEECCeEEEEEeCCCceeeeeccccC
Confidence 346899999999999977789998876643
No 30
>PF12395 DUF3658: Protein of unknown function ; InterPro: IPR022123 This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with PF08874 from PFAM. There are two completely conserved residues (D and R) that may be functionally important.
Probab=26.17 E-value=1.3e+02 Score=27.81 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCEEEEcceeeeec
Q 002170 56 QNVVKQLVNSGQLELINGGMCMHD 79 (957)
Q Consensus 56 ~~~vk~LV~~Grle~vgGgwv~~D 79 (957)
.-|+++||++|+||+.|.--.|.+
T Consensus 85 ~~Ri~~Li~~G~le~~g~~~~mr~ 108 (111)
T PF12395_consen 85 EYRIRELISQGVLEIKGDPKDMRH 108 (111)
T ss_pred HHHHHHHHHCCCEEEecCCCcccc
Confidence 449999999999999886555543
No 31
>PF13289 SIR2_2: SIR2-like domain
Probab=26.14 E-value=3.8e+02 Score=25.23 Aligned_cols=85 Identities=18% Similarity=0.257 Sum_probs=57.4
Q ss_pred CeEEEeeHHHHHHHHhccCHHHHHHHHHHHhCCCEEEEcceeeeeccCCCCHHHHHHHHHHHHHHHHHHcCCCCceeeec
Q 002170 34 RKFIYVEQAFFQRWWRDQSEEVQNVVKQLVNSGQLELINGGMCMHDEAAPHYIDMIDQTTLGHRYIKEQFNVTPRIGWQI 113 (957)
Q Consensus 34 ~kF~~~e~~f~~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv~~Dea~~~~es~Irql~~G~~~l~~~fG~~p~v~W~~ 113 (957)
..++..+..|. +.+ ...+...+.++.+..+.-+-|| ||-+.|. -|++++ +.+.+..|..+.-.|.+
T Consensus 57 ~~~vlt~~~y~-~~~-~~~~~~~~~l~~~l~~~~~lfi--Gys~~D~-------~i~~~l---~~~~~~~~~~~~~~~~v 122 (143)
T PF13289_consen 57 ESIVLTEDDYE-EYY-SSNPWFPNFLRSLLRSKTLLFI--GYSFNDP-------DIRQLL---RSALENSGKSRPRHYIV 122 (143)
T ss_pred CCEEEcHHHHH-HHh-hhHHHHHHHHHHHHcCCCEEEE--EECCCCH-------HHHHHH---HHHHHhccCCCccEEEE
Confidence 34566666654 454 3578889999999999999888 6667666 344444 33555666644455666
Q ss_pred CCCCCChhhHHHHHhhcCCc
Q 002170 114 DPFGHSAVQAYLLSAEVGFD 133 (957)
Q Consensus 114 D~FGhS~~~p~il~~~~G~~ 133 (957)
.+-.-......++ +..|++
T Consensus 123 ~~~~~~~~~~~~~-~~~~i~ 141 (143)
T PF13289_consen 123 IPDPDDENEREFL-EKYGIE 141 (143)
T ss_pred EcCCchHHHHHHH-HHcCCE
Confidence 6666667777788 788876
No 32
>PF10074 DUF2285: Uncharacterized conserved protein (DUF2285); InterPro: IPR018754 This entry contains uncharacterised proteins of unknown function.
Probab=25.45 E-value=13 Score=34.18 Aligned_cols=29 Identities=24% Similarity=0.590 Sum_probs=24.7
Q ss_pred HHHHhccCHHHHHHHHHHHhCCCEEEEcceee
Q 002170 45 QRWWRDQSEEVQNVVKQLVNSGQLELINGGMC 76 (957)
Q Consensus 45 ~~w~~~~~p~~~~~vk~LV~~Grle~vgGgwv 76 (957)
..||+. ...+.+++.||+.|++ ++.|||-
T Consensus 74 ~~~W~~--~~~R~~~~rll~~a~~-l~~gGYr 102 (106)
T PF10074_consen 74 ADEWKD--SSLRRRVRRLLRRARA-LMEGGYR 102 (106)
T ss_pred cccccC--hHHHHHHHHHHHHHHH-HHHhhHH
Confidence 358864 7799999999999999 8999984
No 33
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements. The replacement of Dam-methylase by DRP allows phase variation through slippage-like mechanisms in several pathogenic isolates of Neisseria meningitidis [].; PDB: 4ESJ_A.
Probab=23.76 E-value=1.1e+02 Score=32.16 Aligned_cols=59 Identities=12% Similarity=0.183 Sum_probs=43.4
Q ss_pred hhhhHHhHHHHHHhCCCCeEEEeeHHHHHHHHhccCHH-------HHHHHHHHHhCCCEEEEccee
Q 002170 17 VQNVLDSLIPALVADKNRKFIYVEQAFFQRWWRDQSEE-------VQNVVKQLVNSGQLELINGGM 75 (957)
Q Consensus 17 v~~il~~vl~~L~~~p~~kF~~~e~~f~~~w~~~~~p~-------~~~~vk~LV~~Grle~vgGgw 75 (957)
.+--+-.|+.-+++=|...|+..++.-|+.-+...+|. .|++++-|=..|-|||+|-|-
T Consensus 185 ~rGWlldi~~cid~i~~~~FtL~diY~Fe~~L~~~~P~N~~Ik~KIRQqLQ~LRD~g~IeFl~rG~ 250 (254)
T PF06044_consen 185 SRGWLLDIMKCIDKIPKNEFTLDDIYAFEDELQIKYPNNNHIKAKIRQQLQILRDKGIIEFLGRGR 250 (254)
T ss_dssp HHHHHHHHHHHHHHS-SSEEEHHHHHTTHHHHHHHSTT-S-HHHHHHHHHHHHHHTTSEEE-STTE
T ss_pred ccchHHHHHHHHHhcCccceeHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhhCCceEEecCCc
Confidence 34455677888889999999999997788888887773 344555566789999999774
No 34
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=22.49 E-value=75 Score=24.14 Aligned_cols=35 Identities=11% Similarity=0.297 Sum_probs=26.0
Q ss_pred HHHHhccCHHH-HHHHHHHHhCCCEEEEcceeee-ecc
Q 002170 45 QRWWRDQSEEV-QNVVKQLVNSGQLELINGGMCM-HDE 80 (957)
Q Consensus 45 ~~w~~~~~p~~-~~~vk~LV~~Grle~vgGgwv~-~De 80 (957)
..|..+..... +..++++|++|++ .|+|--+. ++.
T Consensus 4 d~~L~~~~~~~sr~~a~~~I~~g~V-~VNg~~v~~~~~ 40 (48)
T PF01479_consen 4 DKFLSRLGLASSRSEARRLIKQGRV-KVNGKVVKDPSY 40 (48)
T ss_dssp HHHHHHTTSSSSHHHHHHHHHTTTE-EETTEEESSTTS
T ss_pred HHHHHHcCCcCCHHHHHHhcCCCEE-EECCEEEcCCCC
Confidence 34555565554 9999999999999 58988776 443
No 35
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=20.86 E-value=2.2e+02 Score=24.31 Aligned_cols=29 Identities=14% Similarity=0.390 Sum_probs=22.8
Q ss_pred HHHHHhccCH----------HHHHHHHHHHhCCCEEEEc
Q 002170 44 FQRWWRDQSE----------EVQNVVKQLVNSGQLELIN 72 (957)
Q Consensus 44 ~~~w~~~~~p----------~~~~~vk~LV~~Grle~vg 72 (957)
+.+|..+.++ -.+..++++|++|+|+-+.
T Consensus 27 I~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~~~k 65 (77)
T PF00538_consen 27 IKKYIKAKYKVDLNPANFKSRLKRALKRGVEKGKLVQVK 65 (77)
T ss_dssp HHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHCTSEEECS
T ss_pred HHHHHHHhcCcCCChHHHHHHHHHHHHHHHHCCcEEeec
Confidence 5577766543 3678899999999999988
Done!