Query 002171
Match_columns 957
No_of_seqs 356 out of 2140
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 18:07:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02900 alanyl-tRNA synthetas 100.0 3E-236 6E-241 2133.4 89.0 887 48-955 1-897 (936)
2 KOG0188 Alanyl-tRNA synthetase 100.0 2E-236 4E-241 1985.6 66.3 844 58-955 2-854 (895)
3 COG0013 AlaS Alanyl-tRNA synth 100.0 8E-230 2E-234 2019.3 78.5 821 57-955 5-838 (879)
4 TIGR00344 alaS alanine--tRNA l 100.0 1E-221 3E-226 2000.1 82.7 821 62-955 1-831 (851)
5 PRK00252 alaS alanyl-tRNA synt 100.0 6E-217 1E-221 1967.8 81.7 814 57-955 1-824 (865)
6 TIGR03683 A-tRNA_syn_arch alan 100.0 2E-194 5E-199 1763.9 77.6 757 56-955 54-864 (902)
7 PRK13902 alaS alanyl-tRNA synt 100.0 7E-193 1E-197 1751.0 77.4 756 56-955 57-859 (900)
8 PRK01584 alanyl-tRNA synthetas 100.0 3E-188 7E-193 1630.6 53.3 583 58-797 1-592 (594)
9 PF01411 tRNA-synt_2c: tRNA sy 100.0 3E-172 6E-177 1510.4 17.3 545 62-637 1-552 (552)
10 cd00673 AlaRS_core Alanyl-tRNA 100.0 3E-106 7E-111 836.2 18.8 230 60-306 1-232 (232)
11 COG2872 Predicted metal-depend 100.0 2.3E-44 4.9E-49 380.6 22.4 226 541-802 11-239 (241)
12 PLN02961 alanine-tRNA ligase 100.0 2.7E-43 5.8E-48 373.8 24.1 209 567-796 2-222 (223)
13 KOG2105 Predicted metal-depend 100.0 4E-34 8.7E-39 299.3 25.5 310 545-916 24-337 (415)
14 PLN02837 threonine-tRNA ligase 99.9 7.1E-27 1.5E-31 281.0 21.2 220 627-871 30-267 (614)
15 PRK12444 threonyl-tRNA synthet 99.9 3E-25 6.4E-30 269.2 22.7 239 577-871 40-294 (639)
16 PRK12305 thrS threonyl-tRNA sy 99.9 3.7E-25 8E-30 265.6 20.8 205 642-871 8-226 (575)
17 PRK00413 thrS threonyl-tRNA sy 99.9 5.2E-24 1.1E-28 258.7 22.4 210 638-872 66-291 (638)
18 PLN02908 threonyl-tRNA synthet 99.9 1.1E-23 2.4E-28 256.6 21.5 240 574-870 84-340 (686)
19 TIGR00418 thrS threonyl-tRNA s 99.9 3.6E-22 7.9E-27 239.3 17.9 204 644-871 1-220 (563)
20 COG0441 ThrS Threonyl-tRNA syn 99.9 3.8E-21 8.3E-26 226.5 15.0 205 642-874 28-243 (589)
21 PF07973 tRNA_SAD: Threonyl an 99.3 3.8E-12 8.3E-17 101.4 5.8 44 735-794 1-44 (44)
22 PRK14799 thrS threonyl-tRNA sy 99.3 6.3E-12 1.4E-16 149.4 9.1 108 758-872 74-189 (545)
23 KOG1637 Threonyl-tRNA syntheta 99.1 1.7E-11 3.7E-16 137.6 0.8 144 642-872 68-213 (560)
24 smart00863 tRNA_SAD Threonyl a 99.0 5E-10 1.1E-14 89.1 4.4 44 735-794 1-44 (44)
25 cd00768 class_II_aaRS-like_cor 95.9 0.029 6.3E-07 58.3 8.4 115 61-183 3-136 (211)
26 PRK09348 glyQ glycyl-tRNA synt 95.8 0.075 1.6E-06 57.3 11.0 177 56-312 2-180 (283)
27 TIGR00388 glyQ glycyl-tRNA syn 94.8 0.25 5.3E-06 53.7 11.0 175 58-312 1-177 (293)
28 cd00733 GlyRS_alpha_core Class 93.0 0.78 1.7E-05 49.7 10.7 173 60-312 2-176 (279)
29 COG0752 GlyQ Glycyl-tRNA synth 92.7 0.7 1.5E-05 49.7 9.8 177 56-312 3-181 (298)
30 cd00669 Asp_Lys_Asn_RS_core As 92.4 0.24 5.2E-06 54.9 6.3 102 61-176 5-116 (269)
31 PRK00488 pheS phenylalanyl-tRN 91.6 1.1 2.5E-05 51.0 10.5 28 59-86 109-136 (339)
32 TIGR00458 aspS_arch aspartyl-t 89.3 2.1 4.6E-05 50.6 10.6 99 62-176 138-247 (428)
33 PRK14908 glycyl-tRNA synthetas 89.0 3.8 8.1E-05 52.8 12.9 173 57-312 4-181 (1000)
34 cd00776 AsxRS_core Asx tRNA sy 88.8 2.4 5.2E-05 48.2 10.3 101 60-176 27-138 (322)
35 PRK03932 asnC asparaginyl-tRNA 88.5 4.3 9.3E-05 48.4 12.5 105 61-175 137-254 (450)
36 TIGR00462 genX lysyl-tRNA synt 83.7 7 0.00015 44.1 10.5 114 61-190 5-135 (304)
37 PLN02603 asparaginyl-tRNA synt 83.5 12 0.00026 45.8 13.0 30 287-316 528-557 (565)
38 PRK06462 asparagine synthetase 83.0 5.2 0.00011 45.8 9.2 106 60-175 33-151 (335)
39 PF02091 tRNA-synt_2e: Glycyl- 82.5 5.1 0.00011 43.9 8.2 172 61-312 2-175 (284)
40 cd00670 Gly_His_Pro_Ser_Thr_tR 79.7 11 0.00023 40.2 9.7 108 61-182 6-149 (235)
41 PF01411 tRNA-synt_2c: tRNA sy 77.9 0.42 9.1E-06 58.2 -1.9 80 213-318 116-198 (552)
42 PRK05159 aspC aspartyl-tRNA sy 77.3 12 0.00027 44.4 10.1 90 62-162 141-239 (437)
43 PLN02853 Probable phenylalanyl 76.3 16 0.00034 44.0 10.4 27 58-84 221-247 (492)
44 TIGR00499 lysS_bact lysyl-tRNA 76.2 3 6.6E-05 50.3 4.7 100 61-175 176-293 (496)
45 COG0016 PheS Phenylalanyl-tRNA 72.8 7.5 0.00016 44.4 6.4 173 60-308 113-321 (335)
46 PTZ00450 macrophage migration 71.9 4.2 9.1E-05 39.3 3.6 23 169-191 79-101 (113)
47 PLN02502 lysyl-tRNA synthetase 69.8 13 0.00028 45.5 8.0 86 62-162 234-332 (553)
48 PTZ00326 phenylalanyl-tRNA syn 69.5 10 0.00023 45.5 6.9 122 120-308 358-483 (494)
49 KOG1501 Arginine N-methyltrans 63.7 4.9 0.00011 47.0 2.5 80 289-370 72-158 (636)
50 KOG1759 Macrophage migration i 61.9 8.3 0.00018 37.3 3.3 23 170-192 79-101 (115)
51 TIGR00470 sepS O-phosphoseryl- 60.6 14 0.00029 44.1 5.4 19 289-307 317-335 (533)
52 PTZ00401 aspartyl-tRNA synthet 59.1 12 0.00027 45.7 5.0 99 62-176 218-328 (550)
53 PRK09537 pylS pyrolysyl-tRNA s 58.5 33 0.00072 40.6 8.2 198 29-307 179-398 (417)
54 PTZ00397 macrophage migration 58.2 10 0.00022 36.4 3.4 29 164-192 74-102 (116)
55 PF01422 zf-NF-X1: NF-X1 type 56.6 4.8 0.0001 27.1 0.5 9 233-241 12-20 (20)
56 PF11867 DUF3387: Domain of un 49.8 1.1E+02 0.0023 35.1 10.5 196 285-498 34-256 (335)
57 PLN02850 aspartate-tRNA ligase 48.8 22 0.00047 43.4 4.9 101 62-175 230-339 (530)
58 PF01187 MIF: Macrophage migra 47.7 15 0.00033 35.2 2.7 23 170-192 78-100 (114)
59 PF01409 tRNA-synt_2d: tRNA sy 43.5 12 0.00025 41.2 1.4 26 60-85 19-44 (247)
60 smart00438 ZnF_NFX Repressor o 37.0 15 0.00032 26.5 0.6 11 233-243 12-22 (26)
61 COG2024 Phenylalanyl-tRNA synt 36.2 51 0.0011 38.1 4.9 66 237-308 279-344 (536)
62 cd00771 ThrRS_core Threonyl-tR 32.7 25 0.00055 39.5 1.9 48 822-872 1-51 (298)
63 KOG2783 Phenylalanyl-tRNA synt 32.2 24 0.00052 40.8 1.6 32 289-323 296-327 (436)
64 cd00777 AspRS_core Asp tRNA sy 31.6 25 0.00053 39.4 1.5 104 61-176 5-116 (280)
65 cd00775 LysRS_core Lys_tRNA sy 30.1 82 0.0018 36.1 5.5 100 61-177 12-124 (329)
66 PRK09350 poxB regulator PoxA; 29.7 73 0.0016 36.1 4.9 113 60-190 8-138 (306)
67 PF00152 tRNA-synt_2: tRNA syn 26.3 41 0.00089 38.3 2.2 105 61-175 26-140 (335)
68 PRK14063 exodeoxyribonuclease 26.1 79 0.0017 28.6 3.5 32 437-468 6-37 (76)
69 PRK14066 exodeoxyribonuclease 26.0 79 0.0017 28.5 3.5 31 438-468 6-36 (75)
70 PRK14064 exodeoxyribonuclease 25.5 83 0.0018 28.4 3.5 32 437-468 7-38 (75)
71 COG1854 LuxS LuxS protein invo 25.2 4.8E+02 0.01 26.9 9.0 60 642-702 51-112 (161)
72 PRK03991 threonyl-tRNA synthet 25.1 43 0.00093 41.7 2.2 47 821-870 197-246 (613)
73 PF00152 tRNA-synt_2: tRNA syn 25.1 39 0.00084 38.5 1.7 31 285-316 301-331 (335)
74 PRK14067 exodeoxyribonuclease 25.0 83 0.0018 28.8 3.4 32 437-468 8-39 (80)
75 COG1190 LysU Lysyl-tRNA synthe 24.4 28 0.0006 41.8 0.3 29 290-319 470-498 (502)
76 cd00773 HisRS-like_core Class 24.0 1.4E+02 0.003 32.7 5.7 116 60-183 5-139 (261)
77 PRK12295 hisZ ATP phosphoribos 23.9 1.7E+02 0.0037 34.2 6.7 118 55-182 2-136 (373)
78 PF02609 Exonuc_VII_S: Exonucl 23.5 1E+02 0.0022 25.6 3.5 29 440-468 3-31 (53)
79 PLN02850 aspartate-tRNA ligase 23.5 39 0.00084 41.3 1.4 29 288-316 494-522 (530)
80 cd00770 SerRS_core Seryl-tRNA 23.3 38 0.00082 38.1 1.2 49 819-870 17-71 (297)
81 TIGR01280 xseB exodeoxyribonuc 23.3 99 0.0022 27.2 3.5 31 438-468 3-33 (67)
82 TIGR00758 UDG_fam4 uracil-DNA 23.2 1.1E+02 0.0024 31.6 4.5 64 160-224 39-110 (173)
83 TIGR00443 hisZ_biosyn_reg ATP 23.1 2.3E+02 0.0049 32.0 7.4 111 60-182 11-143 (314)
84 PF01361 Tautomerase: Tautomer 23.0 65 0.0014 26.9 2.3 29 164-192 16-44 (60)
85 TIGR00457 asnS asparaginyl-tRN 22.9 42 0.00092 40.2 1.5 29 288-316 417-445 (453)
86 cd00775 LysRS_core Lys_tRNA sy 22.8 42 0.00091 38.4 1.4 28 288-315 297-324 (329)
87 PRK00977 exodeoxyribonuclease 22.6 98 0.0021 28.2 3.4 32 437-468 11-42 (80)
88 PF01343 Peptidase_S49: Peptid 22.4 1E+02 0.0022 31.1 3.9 67 419-485 84-153 (154)
89 PLN02221 asparaginyl-tRNA synt 22.2 1.9E+02 0.0041 35.8 6.8 47 119-175 326-373 (572)
90 PTZ00401 aspartyl-tRNA synthet 22.0 45 0.00097 41.0 1.5 29 288-316 514-542 (550)
91 PTZ00425 asparagine-tRNA ligas 21.7 45 0.00098 41.1 1.4 29 288-316 550-578 (586)
92 cd00777 AspRS_core Asp tRNA sy 21.3 1.4E+02 0.0031 33.3 5.2 31 285-316 246-276 (280)
93 PLN02532 asparagine-tRNA synth 20.9 48 0.001 41.2 1.5 29 288-316 597-625 (633)
94 PRK14068 exodeoxyribonuclease 20.9 1.2E+02 0.0025 27.6 3.5 32 437-468 7-38 (76)
95 COG0017 AsnS Aspartyl/asparagi 20.3 61 0.0013 38.5 2.1 91 60-161 137-234 (435)
96 PLN02221 asparaginyl-tRNA synt 20.2 50 0.0011 40.7 1.4 29 288-316 536-564 (572)
97 PRK14069 exodeoxyribonuclease 20.2 1.2E+02 0.0025 28.8 3.5 32 437-468 9-40 (95)
No 1
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=2.6e-236 Score=2133.39 Aligned_cols=887 Identities=69% Similarity=1.073 Sum_probs=811.1
Q ss_pred cccCCCCCcCCChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCccccccccccccc
Q 002171 48 MPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQK 127 (957)
Q Consensus 48 ~~~~~~~~~~~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~flG~~~p~~~~~~~~r~~~~Qk 127 (957)
||+.|+..++|+++|||++||+||+++||+++|||||||+||||||||||||+||||||+|+++|++++++++|+|+|||
T Consensus 1 ~~~~~~~~~~~~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~Qk 80 (936)
T PLN02900 1 MPEDDAPEKEWPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQK 80 (936)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecc
Confidence 78999998999999999999999999999999999999999999999999999999999999999877788999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHH
Q 002171 128 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (957)
Q Consensus 128 CiR~ggkhnDl~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~ 207 (957)
|||+|||||||||||+|+|||||||||||||||||||+|||.|||||||++|||||+|||||||+||..+ |+|+||++
T Consensus 81 CiR~gGKHnDlenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~~~--~~d~Ea~~ 158 (936)
T PLN02900 81 CIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQ--APDDEARA 158 (936)
T ss_pred cccCCCCCCCHhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCCCc--CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874 99999999
Q ss_pred HHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCC
Q 002171 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPA 287 (957)
Q Consensus 208 iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~ 287 (957)
||+++||++||+++|.+||||+||++||||||||||||+++++++.++++.||+|||||||+|||||||+.||+|+|||+
T Consensus 159 iW~~~~~~~rI~~~~~~dNfW~~G~tGpcGPcsEi~yD~g~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~ 238 (936)
T PLN02900 159 IWLDYLPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADLVNNDDPRFIEIWNLVFIQFNREADGSLKPLPA 238 (936)
T ss_pred HHHHhCCHHHeecCCcccCCccCCCCcCCCCCeEEEEecCCccCccccCCCCCCCEEEEeeeeeeeeeecCCCceeeCCC
Confidence 99999999999999999999999999999999999999998888776678899999999999999999999999999999
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhhhhhhhhheeeecCCCcc
Q 002171 288 KHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCP 367 (957)
Q Consensus 288 k~iDtGmGlERl~~vlq~~~s~ydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~d~a~r~iaDH~R~~~~~i~dG~~P 367 (957)
||||||||||||+|||||++||||||+|.|||++|++++|+++|+|....++.+..|.||||||||+||++|||+||++|
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~~~~~~~~a~rviaDH~R~~~f~i~DGv~P 318 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIADGVVP 318 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccccccccceeeeeehhhHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999998889886543222355789999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHhHhhhCCCccchhhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002171 368 GNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKK 447 (957)
Q Consensus 368 sn~grgyvlRrllRRa~~~~~~~l~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~ 447 (957)
||+|||||||||||||+|+|+.+||++.|||++||+.|++.|++.||||.++++.|++||..||++|.+||++|+++|++
T Consensus 319 sN~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~ 398 (936)
T PLN02900 319 SNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKK 398 (936)
T ss_pred CCCCccHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999654899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc---CCCCChHHHHHhhhccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHH
Q 002171 448 AAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAA 524 (957)
Q Consensus 448 ~~~~~~---~~~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~ 524 (957)
++++.+ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++.........+...+..
T Consensus 399 ~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 478 (936)
T PLN02900 399 ALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIELAAEATSW 478 (936)
T ss_pred HHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHH
Confidence 998765 36899999999999999999999999999999999999999999999999876432221111223233344
Q ss_pred HhhcCCCCcccccCccccee-eeEEEEEEEeCCeeeeeccCCCeEEEEecceeEEEecCCeeccceeEeccce-eEEEEe
Q 002171 525 LHKRGVLATDDSFKFIWFQD-HKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG-SFYVRN 602 (957)
Q Consensus 525 l~~~~~~~t~~~~~Y~y~~~-~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~-~~~V~d 602 (957)
+.+..++++.+|.||++ .+ ++|+|++++.+++.++++..++.+.|+||+|+|||||||||+|+|+|..+++ .++|.+
T Consensus 479 ~~~~~~~~~t~f~gY~~-~~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~~V~d 557 (936)
T PLN02900 479 LQKQGVAATDDFLKYDW-LSDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGGAVVEVSD 557 (936)
T ss_pred HHhccCCCCCccccccc-CCccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCCCEEEEEE
Confidence 43322343446999994 55 8999999998888888888888899999999999999999999999987666 799999
Q ss_pred EEEECCEEEEEEEeecCCcccCCCCEEEEEEchhhhhhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCC
Q 002171 603 VQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHG 682 (957)
Q Consensus 603 v~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~ 682 (957)
|++.+|.++|.+.+.. +++.+|++|.+.|||+||+++|++|||+|||++||+++||.++.|.|++++++++||||+++
T Consensus 558 v~k~~g~i~H~~~~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~ 635 (936)
T PLN02900 558 VQKAGGFVLHIGTVTE--GSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHG 635 (936)
T ss_pred EEEECCEEEEEEEecc--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCC
Confidence 9999999999987544 67899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCccccce-ee
Q 002171 683 KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSI-SA 761 (957)
Q Consensus 683 ~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~r~~~~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~-~~ 761 (957)
+++|++++.+||+.||++|++|+||++.+++++||+++.|++++|+++|++.||||+|+ ++ ++
T Consensus 636 ~~lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~e~y~~~VRVV~Ig----------------~~~d~ 699 (936)
T PLN02900 636 KPMTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFGEKYPDPVRVVSVG----------------GVYSM 699 (936)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcCCCCCCcEEEEEEC----------------Cccce
Confidence 89999999999999999999999999999999999997799999999999999999998 56 89
Q ss_pred eeccCcccccccccccEEEEeeeeccCCeEEEEEEeChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCC
Q 002171 762 ELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAA 841 (957)
Q Consensus 762 elCgGTHV~nTgeIg~fkI~~~~~~~kG~~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~~~~~~g~~ 841 (957)
++||||||+|||+||.|+|++++++++|++||+|+||.+|++++++..+.+++++.+++++...+.+.+..|...+..++
T Consensus 700 elCGGTHV~nTgeIG~fkIls~~~~~~G~rRIe~v~G~~A~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 779 (936)
T PLN02900 700 ELCGGTHVSNTAEAEAFKLLSEEGIAKGIRRITAVTGGAAVEAINAADSLERELDSALKVEGSDLEKKVASLKSRVDAAV 779 (936)
T ss_pred eCCCCCcCCccccCceEEEEEEeeecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999877788888999999888888
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEcccCCCHHHHHHHHHHHH-ccCC
Q 002171 842 IPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVI-EQKV 920 (957)
Q Consensus 842 i~l~~~~~l~~~l~~l~~~lk~~~ke~~~l~~k~a~~~a~~l~~~~~~~~~~~iv~~~~~~~d~~~Lr~la~~l~-~~~~ 920 (957)
+|+.+..++.++++++++++++++|++..++.+++..+++.+++++...+..+++..++.+.++++|+++++.++ +.+.
T Consensus 780 ~~~~~~~el~~~v~~l~~e~k~l~k~~~~l~~~la~~~~~~l~~~~~~~~~~~~v~~~~~~~d~~~Lr~la~~l~~~~~~ 859 (936)
T PLN02900 780 IPAAKKEEIRARVSALQKELRAAQKEAAALRAKLAVAKATELASKALSAGKSVLVARLDVGVDAAALKEAAEKVIAKLGD 859 (936)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEEecCCCCHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999998876654444677777754689999999999998 5444
Q ss_pred -EEEEEEeeCCCCcE-EEEEEecc-ccccccccccccc
Q 002171 921 -ACRSWSSVPMKPRI-RLSYVQVY-QRNQTRANSWRCQ 955 (957)
Q Consensus 921 -~v~ll~~~~~~~kv-~~~~v~~~-~~~~~~Ag~~~k~ 955 (957)
.++++++...++|+ ++|.++++ ..++++|++|+|+
T Consensus 860 ~~vvl~~~~~~~~k~~~~~~~~~~~~~~~~~A~~lvk~ 897 (936)
T PLN02900 860 PAAVVLSSDEEKGKVSLVAAVPPGVVKKGLKAGKWLGA 897 (936)
T ss_pred ceEEEEEecCCCCeEEEEEEEChHHhhcCCCHHHHHHH
Confidence 56666543246788 77788777 5467999999985
No 2
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-236 Score=1985.56 Aligned_cols=844 Identities=55% Similarity=0.902 Sum_probs=780.8
Q ss_pred CChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 002171 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (957)
Q Consensus 58 ~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhnD 137 (957)
||++|||++||+||+++.|++|+||||||.+||||||+|||||||||+|||+ +++++|++|+|||||+||||||
T Consensus 2 ~ta~evR~tFldfF~~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt------~a~lkRa~NsQKCIRAGGKHND 75 (895)
T KOG0188|consen 2 LTASEVRKTFLDFFKSKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT------MAKLKRAANSQKCIRAGGKHND 75 (895)
T ss_pred ccHHHHHHHHHHHHHhcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc------hhhhHhhhhhhhHHhccCCcCC
Confidence 7899999999999999999999999999999999999999999999999998 3468999999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc-CCCC
Q 002171 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPAS 216 (957)
Q Consensus 138 l~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~-~~~~ 216 (957)
||+||+|.+||||||||||||||||||+|||.|||||||++||||++|||||||+||+.+|||+|.||++||+++ +|++
T Consensus 76 LdDVGkD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~vygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~~Gvp~s 155 (895)
T KOG0188|consen 76 LDDVGKDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFVYGIPTDRLYVTYFGGDEKLGLEPDLECREIWNELGVPDS 155 (895)
T ss_pred hhHhchhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHhhcCCCceEEEEEecCccccCCCCCcHHHHHHHHcCCChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchH
Q 002171 217 RVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGF 296 (957)
Q Consensus 217 ~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDtGmGl 296 (957)
||++++++||||+||+||||||||||||||+|+++++.+||.|+|++|||||||||||||++||+|.|||+|||||||||
T Consensus 156 rILp~~~kDNFWEMGdtGPCGPCtEIHyDriG~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~pLp~khIDTGMGf 235 (895)
T KOG0188|consen 156 RILPFGMKDNFWEMGDTGPCGPCTEIHYDRIGGRDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKPLPKKHIDTGMGF 235 (895)
T ss_pred hccCCccccchhhhcCCCCCCcchhhhhhhhcCcchHHHhcCCCcCceeeeeeeeeeeccccCCccccCcccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhhhhhhhhheeeecCCCccCCCCCchHH
Q 002171 297 ERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYVL 376 (957)
Q Consensus 297 ERl~~vlq~~~s~ydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~d~a~r~iaDH~R~~~~~i~dG~~Psn~grgyvl 376 (957)
|||++|||+|.||||||+|.||+++|++.++++ |+| ++.+.+|+||||+|||+||++++||||.+|+|+||||||
T Consensus 236 ERLvsVlQnk~SNYDTDlFtPif~aiq~~~~~~-YtG----~d~d~~D~AyRVvADH~RtlTvalsDG~~Pdn~GrgyvL 310 (895)
T KOG0188|consen 236 ERLVSVLQNKTSNYDTDLFTPIFEAIQEGTGAR-YTG----EDADGIDTAYRVVADHARTLTVALSDGGVPDNTGRGYVL 310 (895)
T ss_pred HHHHHHHhcccccccchhhHHHHHHHHHhcCCC-ccC----CccccchhhHHHHHHHhhhhheeeecCCCCCCCCChhHH
Confidence 999999999999999999999999999999997 998 456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhCCCccchhhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC
Q 002171 377 RRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-GK 455 (957)
Q Consensus 377 RrllRRa~~~~~~~l~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~-~~ 455 (957)
|||||||+||++++||++++||.+|||+|++.||++||||+.+++.|.++|+.||+.|++||++|.++|++.++..+ ++
T Consensus 311 RRILRRavrya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl~rg~~~f~r~~~~~~~s~ 390 (895)
T KOG0188|consen 311 RRILRRAVRYAHEKLNAPPGFFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTLDRGRKLFDRVARELGSSK 390 (895)
T ss_pred HHHHHHHHHHHHHHhCCCcchhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 57
Q ss_pred CCChHHHHHhhhccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCccc
Q 002171 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (957)
Q Consensus 456 ~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~ 535 (957)
+|||+++|.||||||||+|||++||+|+|++||+++|+++.++.+++|+++.+...+ +.+++ +.+| +|||+|
T Consensus 391 tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~~~~~--i~ldv--l~el----~p~TdD 462 (895)
T KOG0188|consen 391 TIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGGGKLS--IDLDV--LSEL----VPPTDD 462 (895)
T ss_pred cCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCCCCCc--ccHHH--HHhh----CCCCCC
Confidence 999999999999999999999999999999999999999999999999876443322 44443 3333 799999
Q ss_pred ccCcccceeeeEEEEEEEeCCeeeeeccCCCeEEEEecceeEEEecCCeeccceeEeccce---eEEEEeEEEECCEEEE
Q 002171 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFG---SFYVRNVQIYGGFVIH 612 (957)
Q Consensus 536 ~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~---~~~V~dv~~~~g~i~H 612 (957)
++||+-...++++|++++.++.+++++..|++++||||+|+||+|+|||.+|+|.|...+. .+.|..++. +|+|+|
T Consensus 463 s~KY~~~~~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh 541 (895)
T KOG0188|consen 463 SFKYNEFGVCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVH 541 (895)
T ss_pred ccccccCccchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhccc-CCEEEE
Confidence 9999535689999999999999999999999999999999999999999999999986543 455555555 899999
Q ss_pred EEEeecCCcccCCCCEEEEEEchhhhhhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHH
Q 002171 613 IGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRR 692 (957)
Q Consensus 613 ~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~ 692 (957)
.+.. + +.+.+||+|.+.+|.+||+.+|++|||||||++||++++ ..+.|+||++.||++||||++...+|.||+.+
T Consensus 542 ~g~l-~--~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l-~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~ 617 (895)
T KOG0188|consen 542 IGVL-E--GDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVL-KGTDQKGSLVAPDKLRFDFSTKGALTKEQLKK 617 (895)
T ss_pred Eeee-c--cccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhc-ccccccccccChhHeeeecccCCCCCHHHHHH
Confidence 9986 3 789999999999999999999999999999999999999 56789999999999999999888899999999
Q ss_pred HHHHHHHHHHcCCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCcccccc
Q 002171 693 IESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNT 772 (957)
Q Consensus 693 IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~r~~~~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nT 772 (957)
+|+.+|++|.++.+|..+++++++|++++|+|++|+|.||++||||.+|.+ ..+++|+|||||+.||
T Consensus 618 vE~~~ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~YPdpVRVVsvg~~-------------~~~svE~CgGTH~~~t 684 (895)
T KOG0188|consen 618 VEDKINEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEVYPDPVRVVSVGAG-------------QLTSVEFCGGTHLTNT 684 (895)
T ss_pred HHHHHHHHHhcCCceEEEecCHHHHhcCCCcccccCCccCCceEEEEeccc-------------cccceeecCCcccccc
Confidence 999999999999999999999999999999999999999999999999843 3679999999999999
Q ss_pred cccccEEEEeeeeccCCeEEEEEEeChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCChHHHHH
Q 002171 773 REAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRA 852 (957)
Q Consensus 773 geIg~fkI~~~~~~~kG~~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~~~~~~g~~i~l~~~~~l~~ 852 (957)
|+||.|.|++.+++++|++||.++||++|.+..+..+.. .+.+.+.+ ..+.|++..+...+..+.+|++.+.+|++
T Consensus 685 ~~i~~fvI~se~~iakgirRivavTG~eA~~a~~~a~~~---~~~~~~~~-~~~~kei~~l~~~~~~a~iP~~~k~~~~~ 760 (895)
T KOG0188|consen 685 SHIGDFVIVSEEGIAKGIRRIVAVTGKEAQEALRLAEDL---DKDLRKTD-KALEKEIQELGENLDHAVIPYWQKDEIRE 760 (895)
T ss_pred cccceEEEechhhhhhceeEEEEeccHHHHHHHHHHHHH---Hhhhcccc-hhhHHHHHHHHHhhccccchHHhHHHHHH
Confidence 999999999999999999999999999999988776631 22222333 56778888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEcccCCCHHHHHHHHHHHH--ccCCEEEEEEeeCC
Q 002171 853 KIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVI--EQKVACRSWSSVPM 930 (957)
Q Consensus 853 ~l~~l~~~lk~~~ke~~~l~~k~a~~~a~~l~~~~~~~~~~~iv~~~~~~~d~~~Lr~la~~l~--~~~~~v~ll~~~~~ 930 (957)
+++++++.++++.|......++....++.++++. +.+.+++|..+... ..++ .++.++++|+ +++
T Consensus 761 ~~k~~~K~~~d~~ra~~~~~qk~~l~~~~~~~~~--~~~~~~~v~~~~~~----------~~~k~~~~~~~i~lls-d~~ 827 (895)
T KOG0188|consen 761 LLKKLQKRMDDLSRALKAAVQKEVLEEAKQLKES--NPNQPLLVHYIESS----------KLLKKQAPDKSIMLLS-DDE 827 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCCEEEEEecch----------HHHHhcCCCCeeEEec-cCC
Confidence 9999999999999998888888888777777653 56778888888642 3334 3678899998 566
Q ss_pred CCcE-EEEEEecc-ccccccccccccc
Q 002171 931 KPRI-RLSYVQVY-QRNQTRANSWRCQ 955 (957)
Q Consensus 931 ~~kv-~~~~v~~~-~~~~~~Ag~~~k~ 955 (957)
.+|+ |.|+|++. ..++++|.+|+++
T Consensus 828 ~gkv~~~c~V~~~a~~~gl~a~~w~q~ 854 (895)
T KOG0188|consen 828 SGKVTCLCQVPQNAANKGLKASEWVQS 854 (895)
T ss_pred CCeEEEEEeecHHHhhccCCHHHHHHH
Confidence 7899 99999999 7889999999975
No 3
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.4e-230 Score=2019.34 Aligned_cols=821 Identities=44% Similarity=0.745 Sum_probs=747.1
Q ss_pred CCChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCC
Q 002171 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (957)
Q Consensus 57 ~~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhn 136 (957)
.||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|..+|++ .|+||||||||+ |
T Consensus 5 ~~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~-----~r~~~sQkcIR~----N 75 (879)
T COG0013 5 KLTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPA-----NRAVTSQKCIRT----N 75 (879)
T ss_pred cCCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCC-----CCeecccccccc----C
Confidence 4999999999999999999999999999999999999999999999999999976664 499999999999 8
Q ss_pred CCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CC
Q 002171 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 214 (957)
Q Consensus 137 Dl~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~--~~ 214 (957)
||||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||+ .|+||+++|++. +|
T Consensus 76 DieNVG~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~--------~Ddea~~~W~~~~gip 147 (879)
T COG0013 76 DIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYE--------DDDEAYNEWEKIIGIP 147 (879)
T ss_pred chhhcCccccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEec--------CchHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999997 699999999998 99
Q ss_pred CCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCC--CCCCCCCCCCeeEEeeecccccccC-CCCccccCCCCccc
Q 002171 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDA--ASLVNNDDPTCIEIWNIVFIQFNRE-SDGSLKPLPAKHVD 291 (957)
Q Consensus 215 ~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~--~~~~~~~~~~~lEiwNlVFmq~~r~-~~g~l~~L~~k~iD 291 (957)
++||+|++.+||||+||+ ||||||||||||+|+..++ .+.+++|++|||||||||||||||+ .+|+|.|||+||||
T Consensus 148 ~~rIir~~~~dNfW~~G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~g~~~~Lp~k~ID 226 (879)
T COG0013 148 PERIIRIGASDNFWEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGDGNYTPLPKKNID 226 (879)
T ss_pred HHHeeecCcCCCCCCCCC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCCCCcccCCCCCcc
Confidence 999999999999999999 9999999999999865443 3678899999999999999999999 79999999999999
Q ss_pred cCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhhhhhhhhheeeecCCCccCCCC
Q 002171 292 TGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEG 371 (957)
Q Consensus 292 tGmGlERl~~vlq~~~s~ydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~d~a~r~iaDH~R~~~~~i~dG~~Psn~g 371 (957)
||||||||+|||||+|||||||+|.|||+.+++++|. .|.. +.+.++.++||||||+||++|||+||++|||+|
T Consensus 227 TGmGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~-~~~~-----~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNeg 300 (879)
T COG0013 227 TGMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGK-KYGE-----DEEDPDVSFRVIADHIRSLAFMIADGVLPSNEG 300 (879)
T ss_pred cCccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCC-cCCc-----cccccceeEEEehhHHHHHHHHHhCCCCcCCCC
Confidence 9999999999999999999999999999999999987 4531 223336799999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhHhhhCCCccchhhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002171 372 REYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQD 451 (957)
Q Consensus 372 rgyvlRrllRRa~~~~~~~l~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~ 451 (957)
||||||||||||+|++ +.||++.|||++|||.+++.|+++||||.++++.|+++|+.||++|.+||++|+++|++++++
T Consensus 301 rGYvlRriiRRa~R~~-~~LG~~~~fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~~ 379 (879)
T COG0013 301 RGYVLRRIIRRALRHG-KLLGIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELAK 379 (879)
T ss_pred ccHHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 579999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcC-CCCChHHHHHhhhccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCC
Q 002171 452 VQG-KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGV 530 (957)
Q Consensus 452 ~~~-~~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (957)
+++ ++|||++||+||||||||+|||++||+|+|++||+++|+.+|++||++||+++ .... .........+.. ..
T Consensus 380 ~~~~~~l~ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~~-~~~~---~~~~~~~~~~~~-~~ 454 (879)
T COG0013 380 LKKSKTLDGEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARASA-GSGE---GAKESEDLELID-KL 454 (879)
T ss_pred hccCCccChHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhcc-cccc---ccchhhhhhhhc-cC
Confidence 864 68999999999999999999999999999999999999999999999999754 1111 001111111111 23
Q ss_pred CCcccccCcccceeeeEEEEEEEeCCeeeeeccCCCeEEEEecceeEEEecCCeeccceeEecc-ceeEEEEeEEEEC-C
Q 002171 531 LATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGL-FGSFYVRNVQIYG-G 608 (957)
Q Consensus 531 ~~t~~~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~-~~~~~V~dv~~~~-g 608 (957)
++| +|.||+ ..+++++|+.++.++..++++.+++.++||||+||||||+|||++|+|+|..+ ++.+.|.|||+.+ +
T Consensus 455 ~~t-ef~gY~-~~~~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~~~~~~V~dvqK~~~~ 532 (879)
T COG0013 455 PET-EFLGYD-DLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDGGGRFEVTDVQKVGNG 532 (879)
T ss_pred CCc-eeeecc-cccceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecCCcEEEEEEEEEcCCc
Confidence 556 599999 88888999999988766888889999999999999999999999999999887 4899999999987 8
Q ss_pred EEEEEEEeecCCcccCCCCEEEEEEchhhhhhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHH
Q 002171 609 FVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPE 688 (957)
Q Consensus 609 ~i~H~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e 688 (957)
.++|.+.... |.+++|+.|.++|||+||..+|+||||||||++||++++|.|++|+||.++++++||||+|.+++|.|
T Consensus 533 ~~vH~~~~~~--G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~it~E 610 (879)
T COG0013 533 VIVHKGKVES--GELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAE 610 (879)
T ss_pred eEEEEEeecc--CccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCCCCCHH
Confidence 9999998766 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCcc
Q 002171 689 HLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTH 768 (957)
Q Consensus 689 ~L~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~r~~~~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTH 768 (957)
+|++||+.+|++|++|+||.+.+|++++|++. |++++|+++|++.||||+|| +||+++|||||
T Consensus 611 el~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~-Ga~alfGekY~~~VRVV~ig----------------~~SvElCGGTH 673 (879)
T COG0013 611 ELKEIERLVNEIIRENLPVKTEEMDLDEAKAK-GAMALFGEKYGDEVRVVEIG----------------DFSVELCGGTH 673 (879)
T ss_pred HHHHHHHHHHHHHHcCCceeEEEccHHHHHHh-ChHhhcCCcCCCeEEEEEEC----------------CceeeccCCcc
Confidence 99999999999999999999999999999998 99999999999999999999 58999999999
Q ss_pred cccccccccEEEEeeeeccCCeEEEEEEeChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCChH
Q 002171 769 LSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKA 848 (957)
Q Consensus 769 V~nTgeIg~fkI~~~~~~~kG~~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~~~~~~g~~i~l~~~~ 848 (957)
|+|||+||.|||+++++++.|++||+|+||..|+++.+..++.+++++.+++.+ .
T Consensus 674 v~~Tg~IG~fkI~~e~~i~aGVrRIeavtG~~a~~~~~~~~~~l~~~a~~lk~~-------------------------~ 728 (879)
T COG0013 674 VSNTGDIGLFKIISEEGIAAGVRRIEAVTGEAALEYLQEQEDLLKEIASLLKVP-------------------------P 728 (879)
T ss_pred cCCccceeeEEEEEecccccCeEEEEEEcCHHHHHHHHHHHHHHHHHHHHhCCC-------------------------h
Confidence 999999999999999999999999999999999999999888888888776642 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCCcEEEEEcccCCCHHHHHHHHHHHH-ccCCEEEE
Q 002171 849 DIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAA---SNGKPFCISRVEVGLDAAAVREAVLKVI-EQKVACRS 924 (957)
Q Consensus 849 ~l~~~l~~l~~~lk~~~ke~~~l~~k~a~~~a~~l~~~~~---~~~~~~iv~~~~~~~d~~~Lr~la~~l~-~~~~~v~l 924 (957)
++..+++.+++++++++|++..++.+++......+...++ ..|.++++.++. +.|++.|+.+++.++ +.+..+++
T Consensus 729 ~~~~kv~~l~~~~k~lekel~~lk~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~-~~d~~~Lr~~a~~lk~k~~~~viv 807 (879)
T COG0013 729 ELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAEEIGGVKVLAKEVD-GADMKELREIADDLKKKLGSAVIV 807 (879)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeCCEEEEEEEec-CCCHHHHHHHHHHHHhhcCCcEEE
Confidence 4555899999999999999999998888777777555432 457788888886 689999999999999 56666666
Q ss_pred EEeeCCCCcE-EEEEEeccccccccccccccc
Q 002171 925 WSSVPMKPRI-RLSYVQVYQRNQTRANSWRCQ 955 (957)
Q Consensus 925 l~~~~~~~kv-~~~~v~~~~~~~~~Ag~~~k~ 955 (957)
|.+. .++|+ ++|.+++++..+++|++|+++
T Consensus 808 l~~~-~~~Kv~~~~~v~~~~~~~~~a~~lvk~ 838 (879)
T COG0013 808 LASV-ADGKVSLVVAVSKDLTDKVKAGELVKE 838 (879)
T ss_pred EEEe-cCCeEEEEEEechhhhcccCHHHHHHH
Confidence 6543 33588 888888666667999999985
No 4
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=1.5e-221 Score=2000.05 Aligned_cols=821 Identities=42% Similarity=0.698 Sum_probs=742.4
Q ss_pred HHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCCCCCCC
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLDDV 141 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~V 141 (957)
|||++||+||++|||+++|||||||+||||||||||||+||||||+|+++|+ ++|+||||||||+ ||||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----nDld~V 71 (851)
T TIGR00344 1 EIRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPP-----SNRLVNAQPCIRL----NDIENV 71 (851)
T ss_pred CHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cchhhh
Confidence 6999999999999999999999999999999999999999999999999986 4899999999999 899999
Q ss_pred CCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc-CCCCCccc
Q 002171 142 GKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LPASRVLP 220 (957)
Q Consensus 142 G~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~-~~~~~i~~ 220 (957)
|+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||+ .|+||++||+++ +|++||++
T Consensus 72 G~t~rHhTfFEMlGnfSFgdYfK~eai~~awe~lT~~~~i~~~rl~vTv~~--------~D~ea~~iW~~~g~~~~~i~~ 143 (851)
T TIGR00344 72 GRTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLYVTVYE--------DDEEAYEIWEKHGIPAERIIR 143 (851)
T ss_pred cCCCcchhhHHhhcccchhhhhHHHHHHHHHHHHhhhcCCChHHEEEEEcC--------CCHHHHHHHHhcCCCHHHccc
Confidence 999999999999999999999999999999999999999999999999996 489999999999 99999999
Q ss_pred CCCCCCcccCCCCCCCcCceeEEeecCCC---CCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHH
Q 002171 221 FGCKDNFWEMGDTGPCGPCSEIHYDRTGN---RDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (957)
Q Consensus 221 ~~~~dNfW~mG~~GpcGpcsEi~yd~~~~---~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDtGmGlE 297 (957)
+|.+||||+||+ ||||||||||||+|+. +.+.+++|.||+|||||||+|||||||++||+|+|||+||||||||||
T Consensus 144 ~~~~dNfW~~G~-GpcGPcsEi~yD~g~~~~~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~~~IDTGmGLE 222 (851)
T TIGR00344 144 CGDKDNFWDMGD-GPCGPCTEIYYDRGEFVGGKPGEPEFFEENDRYVEVWNLVFMQFNRDPDGNYTPLPKKNIDTGMGLE 222 (851)
T ss_pred CCccCCcCCCCC-cCCccCeEEEEecCcccCCCCCcccccCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeecCcCHH
Confidence 999999999999 9999999999998643 344567788999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCcch--hhhhhhhhhhhhhhhheeeecCCCccCCCCCchH
Q 002171 298 RLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDAD--KVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (957)
Q Consensus 298 Rl~~vlq~~~s~ydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~--~~d~a~r~iaDH~R~~~~~i~dG~~Psn~grgyv 375 (957)
||+|||||++||||||+|.|||++|++++|+.+|.+..+..+.+ ..+.||||||||+||++|||+||++|||+|||||
T Consensus 223 Rl~~vlqg~~snydtD~f~~ii~~i~~~~g~~y~~~~~~~~d~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grgYv 302 (851)
T TIGR00344 223 RFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRGYV 302 (851)
T ss_pred HHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCCCcCccccccccccccchheeeehhhhhhhhhhhccCcccCCCCCchh
Confidence 99999999999999999999999999999986554433222222 2346999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhCCCccchhhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002171 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGK 455 (957)
Q Consensus 376 lRrllRRa~~~~~~~l~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~ 455 (957)
||||||||+|+| +.||++.+||++|||.|++.|++.||||.++++.|++||..||++|.+||++|+++|++++++++++
T Consensus 303 lRrilRRa~r~~-~~lg~~~~fl~~lv~~~~~~m~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~l~~~~~~~~~~ 381 (851)
T TIGR00344 303 LRRLIRRALRHG-KKLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLGKK 381 (851)
T ss_pred HHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999 5799999999999999999999999999999999999999999999999999999999999876556
Q ss_pred CCChHHHHHhhhccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCccc
Q 002171 456 VLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDD 535 (957)
Q Consensus 456 ~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~ 535 (957)
.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++... +..+ +..+.. ..++| +
T Consensus 382 ~i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F~~~~~~~~~~sr~~~~~~~---~~~~---~~~~~~-~~~~t-~ 453 (851)
T TIGR00344 382 ELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQTIS---FELQ---EIALAN-VYPAT-E 453 (851)
T ss_pred ccCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhhhhhccc---cccc---HHHHhc-ccCCc-c
Confidence 89999999999999999999999999999999999999999999999988654221 1122 222322 12445 5
Q ss_pred ccCcccceeeeEEEEEEEeCCeeeeeccCCCeEEEEecceeEEEecCCeeccceeEeccceeEEEEeEEEECCEEEEEEE
Q 002171 536 SFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGS 615 (957)
Q Consensus 536 ~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~ 615 (957)
+.+|+ ..+++|+|+++..+++.++++..++.++|+||+|+|||||||||+|+|+|..++..++|.+|++.+|.++|++.
T Consensus 454 ~l~Y~-~~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~ 532 (851)
T TIGR00344 454 FLGYE-DLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIANDGKFRVVDVQKPNGVVFHFGE 532 (851)
T ss_pred cccee-cccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecCCcEEEEEEEEEECCEEEEEEE
Confidence 99999 58999999999988888888888888999999999999999999999999876678999999999999999987
Q ss_pred eecCCcccCCCCEEEEEEchhhhhhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHH
Q 002171 616 LTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIES 695 (957)
Q Consensus 616 ~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~ 695 (957)
+.. +++++|++|.+.|||+||+++|++|||+|||++||+++||.+++|.|++++++++||||++++++|++++.+||+
T Consensus 533 ~~~--g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~ 610 (851)
T TIGR00344 533 VEG--GSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREELEKIED 610 (851)
T ss_pred ecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCCCCCCHHHHHHHHH
Confidence 644 678999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHHcCCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCccccccccc
Q 002171 696 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA 775 (957)
Q Consensus 696 ~~NeiI~~nlpV~~~~~~~eEA~~~~g~r~~~~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeI 775 (957)
.||++|++|+||.+.+++++||++. +.+++++++|++.||||+|+ +++.++||||||+|||+|
T Consensus 611 ~vNelI~~n~pV~~~~~~~eeA~~~-~~~~~~~e~y~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeI 673 (851)
T TIGR00344 611 LVNEQILANIPIKVIFMDLDEAKAK-GAFALFGEKYGEKVRVVSVG----------------DVSVELCGGTHVRNTGEI 673 (851)
T ss_pred HHHHHHHhCCceEEEEeCHHHHHhc-chhhhcCCCCCCeEEEEEEC----------------CeeccCCCCCccCChhhC
Confidence 9999999999999999999999997 45567888899999999998 579999999999999999
Q ss_pred ccEEEEeeeeccCCeEEEEEEeChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCChHHHHHHHH
Q 002171 776 EAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIA 855 (957)
Q Consensus 776 g~fkI~~~~~~~kG~~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~~~~~~g~~i~l~~~~~l~~~l~ 855 (957)
|.|+|++.+++++|++||+|+||.+|+++.++..+.+++++..++++ ..++..+++
T Consensus 674 g~~kI~~~~~~~~G~~RIe~v~G~~A~~~~~~~~~~l~~l~~~L~~~------------------------~~~i~~~v~ 729 (851)
T TIGR00344 674 GLFKIVKESGIAAGVRRIEAVTGNAAIEYLNEQEDKLKELADILKVT------------------------PNELPKKIE 729 (851)
T ss_pred eEEEEEEEeEecCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHhCCC------------------------HHHHHHHHH
Confidence 99999999999999999999999999999998888888887766643 357888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCcEEEEEcccCCCHHHHHHHHHHHH-ccCCEEEEEEeeCCCCc
Q 002171 856 LLQNQVRKAQKKVAEENLQKAVKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVI-EQKVACRSWSSVPMKPR 933 (957)
Q Consensus 856 ~l~~~lk~~~ke~~~l~~k~a~~~a~~l~~~~~-~~~~~~iv~~~~~~~d~~~Lr~la~~l~-~~~~~v~ll~~~~~~~k 933 (957)
+++++++++++++..++.+++...+..+.+.++ .++.++++..++ +.+++.|+++++.++ +.+..++++++ ..++|
T Consensus 730 ~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~~~~~~~i~~~~~-~~d~~~lr~la~~l~~~~~~~vvll~~-~~~~k 807 (851)
T TIGR00344 730 RFFEEWKALQKELESLKLKIADQKIDELKDKAETINGVKVLVEVVD-AKDMKSLKTMADRLKSKLGSAIYVLAS-FANGK 807 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCeEEEEEEcc-CCCHHHHHHHHHHHHhhcCCeEEEEEE-cCCCe
Confidence 999999999999999999999888888876654 355677777775 569999999999998 54567777765 44678
Q ss_pred E-EEEEEecc-ccccccccccccc
Q 002171 934 I-RLSYVQVY-QRNQTRANSWRCQ 955 (957)
Q Consensus 934 v-~~~~v~~~-~~~~~~Ag~~~k~ 955 (957)
+ ++|.++++ ..++++|++|+++
T Consensus 808 ~~~v~~~~~~~~~~~~~A~~lvk~ 831 (851)
T TIGR00344 808 VKLVCGVSNDVLNKGIKAGELINQ 831 (851)
T ss_pred EEEEEEEChhHhhcCCCHHHHHHH
Confidence 8 78888777 4556999999886
No 5
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.6e-217 Score=1967.80 Aligned_cols=814 Identities=46% Similarity=0.771 Sum_probs=741.2
Q ss_pred CCChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCC
Q 002171 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136 (957)
Q Consensus 57 ~~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhn 136 (957)
.|+++|||++||+||++|||+++|||||||+||||||||||||+||||||+|+++|| ++|+||||||||+ |
T Consensus 1 ~~~~~eiR~~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~f~g~~~p~-----~~r~~~~QkCiR~----n 71 (865)
T PRK00252 1 MMTSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPP-----YPRATTSQKCIRT----N 71 (865)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----c
Confidence 388999999999999999999999999999999999999999999999999999886 4899999999999 8
Q ss_pred CCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CC
Q 002171 137 DLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LP 214 (957)
Q Consensus 137 Dl~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~--~~ 214 (957)
||||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||. +|+||++||++. +|
T Consensus 72 Dld~VG~t~rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~~~~i~~~~l~vt~~~--------~D~e~~~iW~~~~g~~ 143 (865)
T PRK00252 72 DLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLYVTVYE--------DDDEAYDIWKKEIGVP 143 (865)
T ss_pred chhhccCCCCchHHHHHhcccchhhhhHHHHHHHHHHHHHHHhCCCHHHEEEEEcC--------CCHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999996 589999999976 99
Q ss_pred CCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCC--CCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCcccc
Q 002171 215 ASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNR--DAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDT 292 (957)
Q Consensus 215 ~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~--~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDt 292 (957)
++||++++.+||||+||++||||||||||||+|+.. ++..+++.|+||||||||+|||||||+++|+|.|||+|||||
T Consensus 144 ~~~i~~~~~~dNfW~~G~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~~~~lEiwNlVF~q~~~~~~g~~~~Lp~~~iDT 223 (865)
T PRK00252 144 PERIIRIGKKDNFWSMGDTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEDGNLTPLPKKNIDT 223 (865)
T ss_pred HHHeecCCccCCccccCCCcCCCCCeEEEEecCcccCCCCCCCCcCCCCcEEEEeeeeeEeeeecCCCceeeCCCCeeec
Confidence 999999999999999999999999999999987543 334678899999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhhhhhhhhheeeecCCCccCCCCC
Q 002171 293 GLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGR 372 (957)
Q Consensus 293 GmGlERl~~vlq~~~s~ydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~d~a~r~iaDH~R~~~~~i~dG~~Psn~gr 372 (957)
|||||||+|||||++||||||+|.|||++|++++|+ +|. .+.||||||||+||++|||+||++|||+||
T Consensus 224 G~GlER~~~ilq~~~snydtd~f~~~i~~i~~~~~~-~y~----------~~~a~rviaDH~R~~~f~i~DG~~Psn~gr 292 (865)
T PRK00252 224 GMGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGV-KYE----------DDVSFRVIADHIRAVAFLIADGVLPSNEGR 292 (865)
T ss_pred CcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCC-CCC----------CCceEEEEcchHHHHHHHHccCcccCCCCc
Confidence 999999999999999999999999999999999998 473 257999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhHhhhCCCccchhhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002171 373 EYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV 452 (957)
Q Consensus 373 gyvlRrllRRa~~~~~~~l~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~ 452 (957)
|||||||||||+|++ +.||++.|||++|||.+++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++.
T Consensus 293 gYvlRrilRRa~r~~-~~lg~~~~~l~~lv~~~~~~~~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~ 371 (865)
T PRK00252 293 GYVLRRILRRAVRHG-RLLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALAKL 371 (865)
T ss_pred chHHHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHHHhhhChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999 6799999999999999999999999999999999999999999999999999999999999876
Q ss_pred cC-CCCChHHHHHhhhccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCC
Q 002171 453 QG-KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVL 531 (957)
Q Consensus 453 ~~-~~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (957)
++ +.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||+.++.... ...+..+.. ..
T Consensus 372 ~~~~~l~g~~~f~LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~~~~~------~~~~~~~~~-~~- 443 (865)
T PRK00252 372 KAGKVLSGEDAFKLYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAARKFKGD------YNALEELLD-DL- 443 (865)
T ss_pred cCCCccCHHHHHHHHhccCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccc------hhHHHHHhh-cC-
Confidence 42 5899999999999999999999999999999999999999999999999875432210 112233322 22
Q ss_pred CcccccCcccceeeeEEEEEEEeCCeeeeeccCCCeEEEEecceeEEEecCCeeccceeEeccceeEEEEeEEEE-CCEE
Q 002171 532 ATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFV 610 (957)
Q Consensus 532 ~t~~~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~-~g~i 610 (957)
+| +|.||+ ..+++|+|++++.++++++++..++.++|+||+|+|||||||||+|+|+|.. +..++|.+|++. +|.+
T Consensus 444 ~t-~f~~Y~-~~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~-~~~~~V~~v~~~~~g~i 520 (865)
T PRK00252 444 AT-EFVGYD-TLEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED-GGVFEVTDTQKPPNGLI 520 (865)
T ss_pred CC-eeeeee-eccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEee-CcEEEEEEEEEccCCEE
Confidence 45 488999 6789999999998888888888888899999999999999999999999977 668999999998 9999
Q ss_pred EEEEEeecCCcccCCCCEEEEEEchhhhhhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHH
Q 002171 611 IHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHL 690 (957)
Q Consensus 611 ~H~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L 690 (957)
+|.+.... +++++|++|.+.|||+||+++|++|||+|||++|++++||.++.|.|++++++++||||++++++|++++
T Consensus 521 ~H~~~~~~--~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~~lt~eel 598 (865)
T PRK00252 521 VHRGKVEE--GELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEEL 598 (865)
T ss_pred EEEEEecc--CCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCCCCCHHHH
Confidence 99987544 6789999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCcccc
Q 002171 691 RRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLS 770 (957)
Q Consensus 691 ~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~r~~~~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~ 770 (957)
.+||+.||++|++|+||++.+++++||++. +++++++++|++.||||+|+ ++++++||||||+
T Consensus 599 ~~IE~~vN~lI~~n~pV~~~~~~~~eA~~~-~~~~~~~~~y~~~VRVV~Ig----------------~~d~~~CgGTHV~ 661 (865)
T PRK00252 599 RKIEDLVNEKIRENLPVETEEMSIEEAKKM-GAMALFGEKYGDEVRVVSIG----------------DFSIELCGGTHVS 661 (865)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCHHHHHhC-CchhhccccCCCeEEEEEEC----------------CceeeCCCCCccC
Confidence 999999999999999999999999999995 77888888899999999998 4799999999999
Q ss_pred cccccccEEEEeeeeccCCeEEEEEEeChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCChHHH
Q 002171 771 NTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADI 850 (957)
Q Consensus 771 nTgeIg~fkI~~~~~~~kG~~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~~~~~~g~~i~l~~~~~l 850 (957)
|||+||.|+|++.+++++|++||+|+||.+|+++.++..+.+++++++++++ ..++
T Consensus 662 nTgeIg~~kI~~~~~~~~g~~RI~~v~G~~A~~~~~~~~~~l~~~~~~l~~~------------------------~~~l 717 (865)
T PRK00252 662 NTGDIGLFKIVSESGVAAGVRRIEAVTGEAALEYLNEQEALLKELAALLKAK------------------------PSEL 717 (865)
T ss_pred CcccCeEEEEEEEeeecCCeEEEEEEECHHHHHHHHHHHHHHHHHHHHhCCC------------------------HHHH
Confidence 9999999999999999999999999999999999999888888888777653 4678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCcEEEEEcccCCCHHHHHHHHHHHH-ccCCEEEEEEee
Q 002171 851 RAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVI-EQKVACRSWSSV 928 (957)
Q Consensus 851 ~~~l~~l~~~lk~~~ke~~~l~~k~a~~~a~~l~~~~~-~~~~~~iv~~~~~~~d~~~Lr~la~~l~-~~~~~v~ll~~~ 928 (957)
.+++++++++++++++++..++.+++...++++.+++. ..+.++++..++ +.+++.|+.+++.++ +.+..++++++
T Consensus 718 ~~~v~~l~~e~k~l~k~~~~l~~~l~~~~~~~l~~~~~~i~~~~~vv~~~~-~~d~~~L~~la~~l~~~~~~~vvll~~- 795 (865)
T PRK00252 718 PERVEALLEELKELEKELEQLKAKLAAAAAGDLLAQAKEVNGVKVLAAQVE-GVDAKALRTLADDLKDKLGSGVVVLAT- 795 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCeEEEEEEec-CCCHHHHHHHHHHHHhhcCCeEEEEEE-
Confidence 88999999999999999999999999999888876544 345566666664 789999999999998 43446666654
Q ss_pred CCCCcE-EEEEEecc-ccccccccccccc
Q 002171 929 PMKPRI-RLSYVQVY-QRNQTRANSWRCQ 955 (957)
Q Consensus 929 ~~~~kv-~~~~v~~~-~~~~~~Ag~~~k~ 955 (957)
..++++ +++.++++ ..++++|++|+++
T Consensus 796 ~~~~k~~~vv~v~~~~~~~gl~A~~l~k~ 824 (865)
T PRK00252 796 VEDGKVSLVVAVTKDLTDKGLKAGDLVKE 824 (865)
T ss_pred ccCCeEEEEEEEChhHhhcCcCHHHHHHH
Confidence 345687 77777776 4467999999885
No 6
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=2.5e-194 Score=1763.90 Aligned_cols=757 Identities=27% Similarity=0.425 Sum_probs=676.0
Q ss_pred cCCChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccccccccccccc-CCCCCCCcccccccccccccccccCCC
Q 002171 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGGK 134 (957)
Q Consensus 56 ~~~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~fl-G~~~p~~~~~~~~r~~~~QkCiR~ggk 134 (957)
++|+++|||++||+||+++||++||||||||+||++||||||||+||||||+ |.++||+ +|+|+||||||+
T Consensus 54 ~~~~~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp~-----~r~~~sQkCiR~--- 125 (902)
T TIGR03683 54 KKYTLDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPPA-----NPLVISQPCIRL--- 125 (902)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCCeeEeecchhhhhHhhcCCCCCCCC-----CCceeccccccc---
Confidence 4599999999999999999999999999999999999999999999999998 9998864 799999999999
Q ss_pred CCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHH
Q 002171 135 HNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 209 (957)
Q Consensus 135 hnDl~~VG~~~rH~TfFeMlGn~sfg-----dYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW 209 (957)
|||||||+|+||||||||||||||| ||||+|||+|||||| ++||||++|| |+
T Consensus 126 -nDldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l-~~lgi~~~~i--~~------------------- 182 (902)
T TIGR03683 126 -NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFL-EELGIDPEEI--TY------------------- 182 (902)
T ss_pred -cccccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHH-HHcCCCHHHe--ee-------------------
Confidence 8999999999999999999999999 999999999999999 9999999998 43
Q ss_pred HhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCC-------CCcc
Q 002171 210 LKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRES-------DGSL 282 (957)
Q Consensus 210 ~~~~~~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~-------~g~l 282 (957)
+||||+|| ||||||||||| + | |||||||||||||++ ||+|
T Consensus 183 --------------~enfW~~G--GpcGPcsEi~~-~--g--------------lEiwnlVFmq~~~~~~~~~~~~~g~~ 229 (902)
T TIGR03683 183 --------------KESPWEGG--GNAGPCFEVIV-G--G--------------LELATLVFMQYEEDKEGEIEIKGGRY 229 (902)
T ss_pred --------------cCCccCCC--CCCCCceeeee-C--c--------------EeeeeeeeeeeccccccccccCCCee
Confidence 69999999 99999999999 2 2 999999999999998 9999
Q ss_pred ccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCcchhhh-------
Q 002171 283 KPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADKVD------- 344 (957)
Q Consensus 283 ~~L~~k~iDtGmGlERl~~vlq~~~s~ydtdlf~pli~~i~~~~~~~-----------~y~g~~~~~~~~~~d------- 344 (957)
+|||+||||||||||||+|||||++||||| +|.|||++|++++|++ +|+|.++.++.++++
T Consensus 230 ~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a 308 (902)
T TIGR03683 230 SEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDLRELRKKVA 308 (902)
T ss_pred eeCCCCceecCCCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhccccCccccchhhHHhhhhh
Confidence 999999999999999999999999999999 9999999999999975 467777765433222
Q ss_pred -----------------hhhhhhhhhhhhheeeecCCCccCCCCCchHHHHHHHHHHHHhHhhhCCCccchhhHHHHHHH
Q 002171 345 -----------------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVK 407 (957)
Q Consensus 345 -----------------~a~r~iaDH~R~~~~~i~dG~~Psn~grgyvlRrllRRa~~~~~~~l~~~~~fl~~lv~~v~~ 407 (957)
.++|+||||+||++|||+||++|||+|||||||||||||+|++ +.||++.| |++||+.+++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~ 386 (902)
T TIGR03683 309 DKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIRRTLRLM-RELGLDIP-LSDLVEMQLE 386 (902)
T ss_pred hhcccchhhhhhhccccceEEEEcchHHHHHHHHhcCCccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999 57999999 9999999999
Q ss_pred HhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhhccCCChhhHHHHHHHcCcee
Q 002171 408 VMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLV 487 (957)
Q Consensus 408 ~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~~v 487 (957)
.|++.||||.++++.|++||+.||++|.+||++|+++|++++++ ++.|||++||+||||||||+|||++||+|+|++|
T Consensus 387 ~~~~~ypel~~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~~--~~~i~g~~~f~LyDTyGfP~dl~~eia~e~g~~v 464 (902)
T TIGR03683 387 ELKKIYPELKENKDYILDILDLEEEKYRETLERGRRIVERLLKT--KKEIPLDDLIELYDSHGIPPEIVKEIAAELGAEV 464 (902)
T ss_pred HHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcCCHHHHHHHHHccCCCHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999975 3579999999999999999999999999999999
Q ss_pred Chh-hHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcc--cceeeeEEEEEEEeCCeeeeeccC
Q 002171 488 DIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFIESVVP 564 (957)
Q Consensus 488 d~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~Y~--y~~~~~a~Vl~i~~~~~~~~~~~~ 564 (957)
|++ +|+++|++|+++||++.+. ..+.. ..+ .++|+|+ +.+|+ |..+++|+|++++.
T Consensus 465 d~~~~F~~~~~~~~~~~~~~~~~------~~~~~--~~~--~~~~~T~-~l~y~~~~~~e~~a~Vl~i~~---------- 523 (902)
T TIGR03683 465 EIPDNFYSIVAERHEKEEKEEEL------PKDYE--ERA--KDLPETR-RLFYEDPTMREFEAKVLGVFD---------- 523 (902)
T ss_pred cCCccHHHHHHHHHHHHHhcccc------ccchh--HHH--hcCCCce-EeccccCccceEEEEEEEEEc----------
Confidence 998 9999999999998764211 01111 111 2467885 77777 44789999999972
Q ss_pred CCeEEEEecceeEEEecCCeeccceeEeccceeEEEEeEEEECCEEEEEEEeecCCcccCCCCEEEEEEchhhhhhHHHH
Q 002171 565 GNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPN 644 (957)
Q Consensus 565 ~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~ 644 (957)
.+|+||+|+|||||||||+|+|+|..+++.++|.+|++.+|.|+|.+. . +.+.+|++|.++|||+||+++|++
T Consensus 524 ---~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~--~--~~l~~G~~V~~~VD~~rR~~~m~~ 596 (902)
T TIGR03683 524 ---NYVVLDQTAFYPEGGGQPADTGYLITNGGKIRVVDVQKVGGVIVHKVD--G--EGIKEGDEVKGEIDWERRLRLMRH 596 (902)
T ss_pred ---CEEEEeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeC--C--CCCCCCCEEEEEECHHHHHHHHHH
Confidence 269999999999999999999999877778999999999999999985 2 348899999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhcCcc
Q 002171 645 HTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLR 724 (957)
Q Consensus 645 HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~r 724 (957)
|||+|||++|++++||.+++|+|++++++++||||++.+++|++++.+||+.||++|.+|+||++.+++++||++..+++
T Consensus 597 HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~ 676 (902)
T TIGR03683 597 HTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQKYGFR 676 (902)
T ss_pred HHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHhcCchh
Confidence 99999999999999999999999999999999999988899999999999999999999999999999999999986654
Q ss_pred ccc-CCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeeccCCeEEEEEEeChHHHH
Q 002171 725 AVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYK 803 (957)
Q Consensus 725 ~~~-~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~~kG~~RI~~vtG~~A~~ 803 (957)
.+. +.+|++.||||+|+ ++|+++||||||.|||+||.|+|++.+++++|++||+|+||.+|++
T Consensus 677 l~~~~~~~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIG~~kI~~~~~i~~Gv~RIe~v~G~~A~~ 740 (902)
T TIGR03683 677 LYQGGVPPGREIRVVEIE----------------DWDVQACGGTHCRNTGEIGPIKILKTERIQDGVERIEFAAGEAALE 740 (902)
T ss_pred hhccCCCCCCeEEEEEEC----------------CeeeeCCCCCCccchhcCceEEEEEEEEecCCeEEEEEEEChHHHH
Confidence 443 35677899999998 5799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002171 804 AFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATET 883 (957)
Q Consensus 804 ~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~~~~~~g~~i~l~~~~~l~~~l~~l~~~lk~~~ke~~~l~~k~a~~~a~~l 883 (957)
+.++.++.+++++++++++ ..++.++++++.+++++++|++..++.+++...++.+
T Consensus 741 ~~~~~~~~l~~~a~~L~~~------------------------~~~l~~~v~~l~~e~k~l~k~l~~l~~~l~~~~~~~l 796 (902)
T TIGR03683 741 YIQELEDLLRESSDILKVP------------------------PEQLPETVKRFFEEWKEQRKEIERLKKKLAELKIYEL 796 (902)
T ss_pred HHHHHHHHHHHHHHHhCCC------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888877753 3567888999999999999999999999998888888
Q ss_pred HHHhc-cCCCcEEEEEcccCCCHHHHHHHHHHHHccCCEEEEEEeeCCCCcE-EEEEEeccccccccccccccc
Q 002171 884 AEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKVACRSWSSVPMKPRI-RLSYVQVYQRNQTRANSWRCQ 955 (957)
Q Consensus 884 ~~~~~-~~~~~~iv~~~~~~~d~~~Lr~la~~l~~~~~~v~ll~~~~~~~kv-~~~~v~~~~~~~~~Ag~~~k~ 955 (957)
...+. .++.++++..+ +.|++.|+.+++.++... .++++++ ..++++ +++.+++++ +++|++|+++
T Consensus 797 ~~~~~~i~g~~vi~~~~--~~d~~~lr~la~~l~~~~-~vvvl~~-~~~~k~~~v~~~~~~~--~~~A~~lvk~ 864 (902)
T TIGR03683 797 ISEAERIGGVEVIVELV--DADMDELQEIAEKLAEKG-LVVVLVS-GGGGNGRVVISSGEKA--GVDAGELVRE 864 (902)
T ss_pred HhhheecCCEEEEEEEe--CCCHHHHHHHHHHHhcCC-cEEEEEE-ccCCcEEEEEEEChhH--hhhHHHHHHH
Confidence 76554 34556666665 579999999999998444 4445543 334676 666655444 6899999886
No 7
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.6e-193 Score=1751.05 Aligned_cols=756 Identities=26% Similarity=0.441 Sum_probs=674.0
Q ss_pred cCCChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccccccccccccc-CCCCCCCcccccccccccccccccCCC
Q 002171 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGGK 134 (957)
Q Consensus 56 ~~~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~fl-G~~~p~~~~~~~~r~~~~QkCiR~ggk 134 (957)
++|+++|||++||+||++|||+++|||||||+||++||||||||+||||||+ |.++|| +.|+|+||||||+
T Consensus 57 ~~~~~~eiR~~Fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp-----~~~~~~sQ~CiR~--- 128 (900)
T PRK13902 57 KKYTLKEMREKFLSFFEKHGHTRIERYPVVARWRDDVYLTIASIYDFQPWVTSGLVPPP-----ANPLVISQPCIRL--- 128 (900)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEcCCcCcCCCCCCCeeeeecchhhhhHHhcCCCCCCC-----CCCceecccccch---
Confidence 4599999999999999999999999999999999999999999999999998 999886 3799999999999
Q ss_pred CCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHH
Q 002171 135 HNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 209 (957)
Q Consensus 135 hnDl~~VG~~~rH~TfFeMlGn~sfg-----dYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW 209 (957)
|||||||+|+||||||||||||||| ||||+|||+|||||||++|||||+|| |+
T Consensus 129 -nDldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~~lgi~~~~I--~~------------------- 186 (900)
T PRK13902 129 -NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELGIDPEEI--TF------------------- 186 (900)
T ss_pred -hhhhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHhhcCCCHHHe--ee-------------------
Confidence 8999999999999999999999999 99999999999999999999999997 33
Q ss_pred HhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCc
Q 002171 210 LKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKH 289 (957)
Q Consensus 210 ~~~~~~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~ 289 (957)
+||||+|| |||||||||||. | |||||||||||||+ +|+|+|||+||
T Consensus 187 --------------~enfW~~G--GpcGPcsEi~~~---g--------------lEiwnlVFmqy~~~-~g~~~~Lp~k~ 232 (900)
T PRK13902 187 --------------KESWWEGG--GNAGPCFEVLVR---G--------------LELATLVFMQYKKD-GNRYVEMPLKI 232 (900)
T ss_pred --------------cccccCCC--CCCCCceeeeeC---C--------------EEeeeeeeeEEEcC-CCeeeeCCCCe
Confidence 69999999 999999999992 2 99999999999998 89999999999
Q ss_pred cccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCcchhh-----h---------
Q 002171 290 VDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADKV-----D--------- 344 (957)
Q Consensus 290 iDtGmGlERl~~vlq~~~s~ydtdlf~pli~~i~~~~~~~-----------~y~g~~~~~~~~~~-----d--------- 344 (957)
||||||||||+|||||++||||| +|.|||++|++++|++ +|+|.++.++.+++ +
T Consensus 233 VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~ 311 (900)
T PRK13902 233 VDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSLRQKVAKKLGIDV 311 (900)
T ss_pred eeCCcCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhcccCCcccchhHHHHHHHHHhhcccch
Confidence 99999999999999999999999 9999999999999975 36677765332211 1
Q ss_pred ----------hhhhhhhhhhhhheeeecCCCccCCCCCchHHHHHHHHHHHHhHhhhCCCccchhhHHHHHHHHhcCCCh
Q 002171 345 ----------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFP 414 (957)
Q Consensus 345 ----------~a~r~iaDH~R~~~~~i~dG~~Psn~grgyvlRrllRRa~~~~~~~l~~~~~fl~~lv~~v~~~~~~~yp 414 (957)
.|+|+||||+||++|||+||++|||+|||||||||||||+|++ +.||++.+ |++||+.+++.|++.||
T Consensus 312 ~~~~~~~~~~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv~~~~~~~~~~yp 389 (900)
T PRK13902 312 EELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLRLL-DELGLDVP-LSELVDMQIDELKEDYP 389 (900)
T ss_pred hhhhhhccccceEEEEecHHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHHHHHHHHHhhhCh
Confidence 4788999999999999999999999999999999999999999 57999999 99999999999999999
Q ss_pred hhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhhccCCChhhHHHHHHHcCceeCh-hhHH
Q 002171 415 ELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDI-EGFN 493 (957)
Q Consensus 415 el~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~~vd~-~~f~ 493 (957)
||.++++.|++||..||++|.+||++|.++|++++++. +.|||++||+||||||||+|||++||+|+|++||+ ++|+
T Consensus 390 el~~~~~~I~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~--~~l~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd~p~~F~ 467 (900)
T PRK13902 390 ELKENRDYILDIVDLEEEKYRETLERGKRIVERLAKKK--EEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNFY 467 (900)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCHHHHhhhhhcCCCCHHHHHHHHHHcCCccCchhhHH
Confidence 99999999999999999999999999999999999875 57999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcc--cceeeeEEEEEEEeCCeeeeeccCCCeEEEE
Q 002171 494 NAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFIESVVPGNEVGIV 571 (957)
Q Consensus 494 ~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~Y~--y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vv 571 (957)
++|++|+++|+++.+. . ... . ..+ .++|+|+ +.+|+ |..+++|+|++++. .+|+
T Consensus 468 ~~~~~~~~~~~~~~~~--~----~~~-~-~~~--~~~~~T~-~l~y~~~~~~~~~a~Vl~i~~-------------~~vv 523 (900)
T PRK13902 468 SLVAERHEKAEEEEEE--P----VVE-E-ERL--KDLPETE-KLFYEDPYMREFEAKVLGVID-------------NYVV 523 (900)
T ss_pred HHHHHHHHHHhhcccc--c----cch-h-hHh--hcCCCce-EeccccCccceEEEEEEEEEc-------------CEEE
Confidence 9999999998763111 0 000 0 111 2567885 77887 44789999999973 2799
Q ss_pred ecceeEEEecCCeeccceeEeccceeEEEEeEEEECCEEEEEEEeecCCcccCCCCEEEEEEchhhhhhHHHHhhHHHHH
Q 002171 572 LASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHML 651 (957)
Q Consensus 572 LD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTA~HLL 651 (957)
||+|+|||||||||+|+|+|..++..++|.+|++.+|.++|.+. . +.+.+|++|.++|||+||+++|++|||+|||
T Consensus 524 LD~T~FYpEgGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~~--~--~~~~~G~~V~~~VD~~rR~~~mr~HTAtHLL 599 (900)
T PRK13902 524 LDQTAFYPEGGGQPADTGVLIVDGKGYKVVDVQKVGGVIVHVLE--G--EPPKKGDEVRGEIDWERRYRLMRHHTATHII 599 (900)
T ss_pred EeCCCCCCCCCCCCCCEEEEEeCCcEEEEEEEEEECCEEEEEeC--C--CCCCCCCEEEEEECHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877778999999999999999985 2 4455699999999999999999999999999
Q ss_pred HHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhcCccccc-CCc
Q 002171 652 NFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVF-GEV 730 (957)
Q Consensus 652 s~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~r~~~-~e~ 730 (957)
++|++++||.+++|.|++++++++||||++.+++|++++.+||+.+|++|.+|+||.+.+++++||++..+++.++ +++
T Consensus 600 ~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~g~~ 679 (900)
T PRK13902 600 LAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQGGVP 679 (900)
T ss_pred HHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHhccchhhhccCCC
Confidence 9999999999999999999999999999998899999999999999999999999999999999999987765543 466
Q ss_pred CCCCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeeccCCeEEEEEEeChHHHHHHHHHHH
Q 002171 731 YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAACS 810 (957)
Q Consensus 731 y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~~kG~~RI~~vtG~~A~~~~~~~~~ 810 (957)
|++.||||+|+ ++|+++||||||.|||+||.|+|++++++++|++||+|+||.+|+++.++.++
T Consensus 680 ~~~~VRVV~Ig----------------~~d~e~CgGTHV~nTgeIG~~kI~~~e~i~~Gv~RIe~v~G~~A~~~~~~~~~ 743 (900)
T PRK13902 680 PGKTIRVVEIG----------------DWDVEACGGTHVSNTGEIGPIKILKTERIQDGVERLEFAAGDAAVEYIQELED 743 (900)
T ss_pred CCCeEEEEEEC----------------CeeeeCCCCCCcCcHhhCeeEEEEEEEEecCCeEEEEEEEChHHHHHHHHHHH
Confidence 88899999998 57999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c
Q 002171 811 LEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAA-S 889 (957)
Q Consensus 811 ~~~~l~e~~~~~~~~i~k~l~~~~~~~~g~~i~l~~~~~l~~~l~~l~~~lk~~~ke~~~l~~k~a~~~a~~l~~~~~-~ 889 (957)
.+++++++++++ .+++.+++++++++++++++++..++.+++...++.+..+++ .
T Consensus 744 ~l~~~a~~L~~~------------------------~~el~~~v~kl~ee~k~l~kei~~l~~~l~~~~~~~l~~~~~~~ 799 (900)
T PRK13902 744 LLKEAAEILGVP------------------------PEQLPKTVERFFEEWKEQKKEIEKLRKELAELLASELLSKAEEV 799 (900)
T ss_pred HHHHHHHHhCCC------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEe
Confidence 888888877653 357888899999999999999999999999888888776654 3
Q ss_pred CCCcEEEEEcccCCCHHHHHHHHHHHHccCCEEEEEEeeCCCCcE-EEEEEeccccccccccccccc
Q 002171 890 NGKPFCISRVEVGLDAAAVREAVLKVIEQKVACRSWSSVPMKPRI-RLSYVQVYQRNQTRANSWRCQ 955 (957)
Q Consensus 890 ~~~~~iv~~~~~~~d~~~Lr~la~~l~~~~~~v~ll~~~~~~~kv-~~~~v~~~~~~~~~Ag~~~k~ 955 (957)
++.++++..+ +.|++.|+.+++.++.....+++++ .++|+ +++.++++.. ++|++|+++
T Consensus 800 ~g~~~i~~~~--~~d~~~Lr~~a~~l~~~~~~vvl~~---~~~k~~~v~~~~~~~~--~~a~~lvk~ 859 (900)
T PRK13902 800 GGVKVVVEEV--DADEDELRKIANELAKEGKVALVVL---GNGGGQIVVGVGEDVG--VNAGEIVRE 859 (900)
T ss_pred CCEEEEEEEe--CCCHHHHHHHHHHHHhcCCeEEEEE---cCCcEEEEEEEChhhh--hhHHHHHHH
Confidence 5566666666 5799999999999983333444443 23566 6666655432 899999885
No 8
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.3e-188 Score=1630.63 Aligned_cols=583 Identities=41% Similarity=0.730 Sum_probs=542.6
Q ss_pred CChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 002171 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (957)
Q Consensus 58 ~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhnD 137 (957)
|+++|||++||+||++|||+++|||||||+||||||||||||+||||||+|.++|+ ++|+||||||||+ ||
T Consensus 1 ~~~~eiR~~fl~FF~~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~-----~~r~~~~QkCiR~----~D 71 (594)
T PRK01584 1 MTLDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPS-----GTRLVDVQKCLRT----GD 71 (594)
T ss_pred CCHHHHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCC-----CCCcccccccccc----cc
Confidence 78999999999999999999999999999999999999999999999999999886 4799999999999 79
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhc--cCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc-CC
Q 002171 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKV--YRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF-LP 214 (957)
Q Consensus 138 l~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~--l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~-~~ 214 (957)
||||| |+|||||||||||||||||||+|||+|||||||++ |||||+|||||||+||+. +|+|+||++||+++ +|
T Consensus 72 le~VG-~~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~~~~~~--~~~D~Ea~~iW~~~g~~ 148 (594)
T PRK01584 72 IDEVG-DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEE--IPRDEETASVWESLGIP 148 (594)
T ss_pred ccccC-CCcchhHHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEeCCCCC--CCCCHHHHHHHHHcCCC
Confidence 99999 89999999999999999999999999999999998 999999999999999885 89999999999999 99
Q ss_pred CCCcccCCCCCCcc-cCCCCCCCcCceeEEeecCCCCCCC--CCCCCCCCCeeEEeeecccccccCCCCccccCCCCccc
Q 002171 215 ASRVLPFGCKDNFW-EMGDTGPCGPCSEIHYDRTGNRDAA--SLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVD 291 (957)
Q Consensus 215 ~~~i~~~~~~dNfW-~mG~~GpcGpcsEi~yd~~~~~~~~--~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iD 291 (957)
++||++++.+|||| +||++||||||||||||+|+. ++. +.++++|+|||||||+|||||||++||+|+|||+||||
T Consensus 149 ~~rI~~~~~~dNfW~~~G~~GPCGPcsEI~~d~g~~-~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~g~~~~Lp~k~ID 227 (594)
T PRK01584 149 KDRIFYLSREHNWWGPVGETGPCGPDTEIFVDTGKP-KCSVNCRPTCSCGKYFEIWNNVFMQYNKDEDGNYEELKRKCVD 227 (594)
T ss_pred HHHeeeCCCCCCcccccCCCcCCCCceEEEEecCCc-ccccccCCCCCCCceEEEeeeeeeeeeecCCCccccCCCCcee
Confidence 99999999999999 799999999999999998754 221 23456889999999999999999999999999999999
Q ss_pred cCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhhhhhhhhheeeecC--CCccCC
Q 002171 292 TGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIAD--GSCPGN 369 (957)
Q Consensus 292 tGmGlERl~~vlq~~~s~ydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~d~a~r~iaDH~R~~~~~i~d--G~~Psn 369 (957)
||||||||+|||||++||||||+|.|||++|++++|+ +|.. .+..|.|||+||||+||++|||+| |++|||
T Consensus 228 TGmGLERl~~vlqg~~s~ydtdlf~pii~~i~~~~~~-~y~~------~~~~~~a~rvIaDH~R~~~f~i~D~~Gv~PsN 300 (594)
T PRK01584 228 TGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGK-IYGQ------NEEDDRSIRIIADHIRAACFILGDPFVVLPSN 300 (594)
T ss_pred CCcCHHHHHHHHcCCCCccchhhhHHHHHHHHHHhCC-CcCC------CCCCceeEEEEecHHHHHHHHhhcccCCCCCC
Confidence 9999999999999999999999999999999999998 5731 123468999999999999999999 999999
Q ss_pred CCCchHHHHHHHHHHHHhHhhhCCCccchhhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002171 370 EGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAA 449 (957)
Q Consensus 370 ~grgyvlRrllRRa~~~~~~~l~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~ 449 (957)
+|||||||||||||+|+| +.||++.+||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+
T Consensus 301 ~grGYvlRrilRRa~r~~-~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i 379 (594)
T PRK01584 301 VGQGYVLRRLIRRSIRHA-KKLGIESHFLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLI 379 (594)
T ss_pred CCCchHHHHHHHHHHHHH-HHhCCCchhHHHHHHHHHHHHhhhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc-CCCCChHHHHHhhhccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhc
Q 002171 450 QDVQ-GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKR 528 (957)
Q Consensus 450 ~~~~-~~~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~ 528 (957)
++++ ++.|||++||+||||||||+|||++||+|+|++||+++|+++|++|+++||++ +
T Consensus 380 ~~~~~~~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~~~~~-~-------------------- 438 (594)
T PRK01584 380 PNLGSSKIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKG-A-------------------- 438 (594)
T ss_pred HHhccCCccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHhhc-c--------------------
Confidence 8864 56899999999999999999999999999999999999999999998877641 0
Q ss_pred CCCCcccccCcccceeeeEEEEEEEeCCeeeeeccCCCeEEEEecceeEEEecCCeeccceeEeccceeEEEEeEEEECC
Q 002171 529 GVLATDDSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGG 608 (957)
Q Consensus 529 ~~~~t~~~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g 608 (957)
. .+|. ||++|+|.
T Consensus 439 ~----~~f~---------------------------------------------g~~~d~g~------------------ 451 (594)
T PRK01584 439 D----KVFK---------------------------------------------GGLADHSY------------------ 451 (594)
T ss_pred c----cccc---------------------------------------------CCcCcccc------------------
Confidence 0 0010 34555543
Q ss_pred EEEEEEEeecCCcccCCCCEEEEEEchhhhhhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHH
Q 002171 609 FVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPE 688 (957)
Q Consensus 609 ~i~H~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e 688 (957)
.+|++|||+|||++|++++||.++.|+|++++++++||||++++++|++
T Consensus 452 -------------------------------~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~r~DF~~~~~it~e 500 (594)
T PRK01584 452 -------------------------------ETTKLHTATHLLHKALRLVLGDHVRQKGSNITAERLRFDFSHPEKMTDD 500 (594)
T ss_pred -------------------------------cHHHHHHHHHHHHHHHHHHcCccceeecCCcCCCcEEEEEeCCCCCCHH
Confidence 3699999999999999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCcc
Q 002171 689 HLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTH 768 (957)
Q Consensus 689 ~L~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~r~~~~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTH 768 (957)
++.+||+.||++|++|+||++.+++++||++. +.+++++++|++.||||+|+ +++.++|||||
T Consensus 501 dL~~IE~~vNeiI~~n~pV~~~~~s~eEA~~~-~~~~lf~e~y~~~VRVV~Ig----------------d~d~elCGGTH 563 (594)
T PRK01584 501 EIKKVEDIVNLQIKNDLSVKKEVMSLEEAREK-GAMALFGEKYEDIVKVYEID----------------GFSKEVCGGPH 563 (594)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEcCHHHHHhc-chhhhccccCCCcEEEEEEC----------------CeeeeCCCCCC
Confidence 99999999999999999999999999999996 56778888899999999998 57899999999
Q ss_pred cccccccccEEEEeeeeccCCeEEEEEEe
Q 002171 769 LSNTREAEAFALLSEEGIAKGIRRITAVT 797 (957)
Q Consensus 769 V~nTgeIg~fkI~~~~~~~kG~~RI~~vt 797 (957)
|+|||+||.|+|++.+++++|++||+|+.
T Consensus 564 V~nTgeIG~fkI~s~~s~g~GvrRI~av~ 592 (594)
T PRK01584 564 VENTGELGTFKIQKEQSSSSGVRRIRAIL 592 (594)
T ss_pred CCCcccCceEEEEecccccCCeEEEEEEe
Confidence 99999999999999999999999999985
No 9
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=2.8e-172 Score=1510.42 Aligned_cols=545 Identities=54% Similarity=0.928 Sum_probs=454.4
Q ss_pred HHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccccccccCCC-CCCCcccccccccccccccccCCCCCCCCC
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTA-DPNTQLSKLTRACNTQKCIRAGGKHNDLDD 140 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~flG~~-~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~ 140 (957)
|||++||+||++|||+++|||||||+||||||||||||+||||||+|.+ +|+ ++|+|+||||||+|||||||||
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~~lvp~~d~~llf~~Agm~~fkp~f~g~~~~p~-----~~r~~~~Q~CiR~~GkhnDld~ 75 (552)
T PF01411_consen 1 EIREKFLDFFEKKGHTIVPSSSLVPRWDPTLLFTNAGMNQFKPYFLGGEVPPP-----ANRLVSSQKCIRTGGKHNDLDN 75 (552)
T ss_dssp HHHHHHHHHHHTTT-EEE----SS-TT-TTBSS--SGGGGGCCCCTTSSS--S-----SSCEEEEEEEE-EETTEECGGG
T ss_pred CHHHHHHHHHHHCCCEEeccCCcccCCCCCceeeHhhHHHHHHHhcCCCCCCC-----CCcccccceeeccCCCcchhhh
Confidence 7999999999999999999999999999999999999999999999998 554 4899999999999999999999
Q ss_pred CCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CCCCCc
Q 002171 141 VGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRV 218 (957)
Q Consensus 141 VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~--~~~~~i 218 (957)
||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||.+ |+||++||+++ +|++||
T Consensus 76 VG~t~rH~T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~~~~l~vt~~~~--------d~ea~~~w~~~~g~~~~~i 147 (552)
T PF01411_consen 76 VGRTGRHHTFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIPPDRLYVTVFEW--------DGEAGEIWEKIVGGPEERI 147 (552)
T ss_dssp TTTSSS--SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--GGGEEEEEECC--------ECCCCCCCCECCTTECCCE
T ss_pred cCCCceEeeehhhccccccccccHHHHHHHHHHHHHhhcCCChHhEEEEEeCC--------chhHHHHHHHhcCCCHHHe
Confidence 99999999999999999999999999999999999999999999999999986 56999999999 999999
Q ss_pred ccCCCCCCcccCCCCCCCcCceeEEeecCCCCCC---CCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCch
Q 002171 219 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDA---ASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (957)
Q Consensus 219 ~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~---~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDtGmG 295 (957)
++|+.+||||+||++||||||||||||+|..+.+ .+.++++++||+||||+|||||||++||++.|||+++||||||
T Consensus 148 ~~~~~~~nfw~~g~~gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~~~~eiwn~vf~q~~~~~~g~~~~L~~~~idtGmg 227 (552)
T PF01411_consen 148 LVFGKKDNFWEMGDTGPCGPCSEIFYDRGEERGCWDSQGTPTCDDDRFLEIWNLVFMQYNRDEDGSLEPLPKKNIDTGMG 227 (552)
T ss_dssp EEE-CCEEEEESSTSEEEEEEEEEEEEEECCCHHHHHHSTSSHHHHHECCCCCCCCCEEEETTTSHCCCCCCCCCCCCEE
T ss_pred EecCCCCceEECCCCCCCCCCEEEEECCCcccCccccccccccccccHHHHHHHHHHHhccccccccccccchhhhcCCC
Confidence 9999999999999999999999999999866543 4677889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhhhhhhhhheeeecCCCccCCCCCchH
Q 002171 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (957)
Q Consensus 296 lERl~~vlq~~~s~ydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~d~a~r~iaDH~R~~~~~i~dG~~Psn~grgyv 375 (957)
|||++++|||++|||+||+|.|+++.++++++. +|. +....+.|+|+||||+||++|||+||++|||+|||||
T Consensus 228 ler~~~~lq~~~s~~~tdlf~~i~~~i~~~~~~-~y~------~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~GrGYv 300 (552)
T PF01411_consen 228 LERLAAVLQGVRSNYDTDLFMPIIEAIEELSGV-PYK------DEEEIDVALRVIADHIRALTFAIADGVLPSNEGRGYV 300 (552)
T ss_dssp HHHHCHHHCCHCCHHHCHHTCHHHHHHHHHHC---TT------SSCCCHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHH
T ss_pred cHHHHHHHhhhhhhhchhhhhhHHHHHHHHcCC-Ccc------cccccccEEEEEcchhhceeeEecCCeeecccCCcch
Confidence 999999999999999999999999999999998 672 2245578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhCCCccchhhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C
Q 002171 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-G 454 (957)
Q Consensus 376 lRrllRRa~~~~~~~l~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~-~ 454 (957)
||||||||+|++ +.||++.+||++|++.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++ +
T Consensus 301 lRriiRRa~r~~-~~lg~~~~fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~ 379 (552)
T PF01411_consen 301 LRRIIRRAVRFG-RKLGIEEPFLYELVPVVIESMGDFYPELKENKDYIKDIIKEEEERFLKTLERGLKLLEKLIKKLKKK 379 (552)
T ss_dssp HHHHHHHHHHHH-HHTT-SS--HHHHHHHHHHHHTTTGTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH-HHhCCCccchHHHHHHHHHHhhccChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999 68999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred CCCChHHHHHhhhccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcc
Q 002171 455 KVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATD 534 (957)
Q Consensus 455 ~~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~ 534 (957)
++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++.... +..+.. .+ ..+++++
T Consensus 380 ~~lsge~aF~LYDTyGfP~Dlt~eia~e~gl~vD~~~f~~~m~~qr~~sr~~~~~~~~--~~~~~~---~~--~~l~~~t 452 (552)
T PF01411_consen 380 KELSGEDAFKLYDTYGFPLDLTEEIAEEKGLSVDEEGFEYAMEEQRERSRAAKKKKSS--IEEDVS---AL--AELPKTT 452 (552)
T ss_dssp SEE-HHHHHHHHHHH---HHHHHHHHHTTT-EE-HHCCHHHHHHHCHHHCCHH----------SSS---TT--TTCHHHE
T ss_pred cCCChHHheeehhccCCCHHHHHHHHHHhceeecHHHHHHHHHHHHHHhhhccccccc--hhhhHH---HH--hhhhccc
Confidence 7999999999999999999999999999999999999999999999999876543320 111111 11 1345556
Q ss_pred cccCcccceeeeEEEEEEEeCCeeeeeccCCCeEEEEecceeEEEecCCeeccceeEeccceeEEEEeEEEECCEEEEEE
Q 002171 535 DSFKFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIG 614 (957)
Q Consensus 535 ~~~~Y~y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~ 614 (957)
+|.||+ .++++|+|++|+.+++++.++..++..+||||+|+|||||||||+|+|+|..++..+.|.+|++.+|+++|.+
T Consensus 453 eF~gYe-~~~~~akVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~i~H~~ 531 (552)
T PF01411_consen 453 EFVGYE-YLECEAKVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQPGDTGTIIGDGGEFEVTDVQKVGGVILHIG 531 (552)
T ss_dssp ETCCCC-------TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB----EEECCTTEEEEEEEEEEETTEEEEEE
T ss_pred ccceee-cccccceEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCCCCCeEEEeecceEEEEEEEEEECCEEEEEE
Confidence 799999 6789999999998888888887788889999999999999999999999999889999999999999999999
Q ss_pred EeecCCcccCCCCEEEEEEchhh
Q 002171 615 SLTEGAGRFSVGEEVICKVDYDR 637 (957)
Q Consensus 615 ~~~~~~~~l~~G~~V~~~VD~er 637 (957)
.... +.+++|+.|.++|||+|
T Consensus 532 ~~~~--g~l~~G~~V~~~VD~eR 552 (552)
T PF01411_consen 532 EVES--GSLKVGDEVTAEVDWER 552 (552)
T ss_dssp SSG---GG--TTSEEEEEE-HHH
T ss_pred eccC--CCCCCCCEEEEEecCCC
Confidence 8654 78999999999999997
No 10
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=3.2e-106 Score=836.19 Aligned_cols=230 Identities=63% Similarity=1.115 Sum_probs=222.1
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCCCCC
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHNDLD 139 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhnDl~ 139 (957)
++|||++||+||++|||+++|||||||++|||||||||||+||||||+|+++|+ ++|+|++|||||+ ||||
T Consensus 1 ~~eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM~~Fkp~f~G~~~p~-----~~r~~~~QkCiR~----~Die 71 (232)
T cd00673 1 ASEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPP-----ANRLVNSQKCIRA----GDID 71 (232)
T ss_pred ChHHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccchhhhhHHhcCCCCCC-----CCceeeeeeceec----CChh
Confidence 479999999999999999999999999999999999999999999999999886 4899999999999 7999
Q ss_pred CCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CCCCC
Q 002171 140 DVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASR 217 (957)
Q Consensus 140 ~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~--~~~~~ 217 (957)
|||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||+| |+||++||.+. +|++|
T Consensus 72 nVG~t~rHhTfFEMLGNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~vTv~~~--------dde~~~~w~~~~g~~~~~ 143 (232)
T cd00673 72 NVGKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEG--------DDEEEAIWWWKIGLPGIR 143 (232)
T ss_pred hccccccchhhhhhhcccchhhhhHHHHHHHHHHHHHhhcCCCccceEEEEeCC--------CHHHHHHHHHhhCCCHHH
Confidence 999999999999999999999999999999999999999999999999999974 89999999988 99999
Q ss_pred cccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHH
Q 002171 218 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (957)
Q Consensus 218 i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDtGmGlE 297 (957)
|++++.+||||+||++||||||||||||+++++++...+++||+|||||||+|||||||+++|+|.|||+||||||||||
T Consensus 144 i~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~r~lEIWNlVFmqy~r~~~g~l~pLp~k~IDTGmGlE 223 (232)
T cd00673 144 IERIGFKDNFWEMGGNGPCGPCSEIFYDRGEERDAASLPNEDDDRYLEIWNLVFMQYNRDADGTYRPLPKKIVDTGMGLE 223 (232)
T ss_pred eeeCCccCCCCCCCCCcCCCCCEEEEEccCCCcCccccccCCCCCEEEEeeeeeeeeeccCCCCCccCCCCeeeCCcCHH
Confidence 99999999999999999999999999999887777668889999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC
Q 002171 298 RLTSILQNK 306 (957)
Q Consensus 298 Rl~~vlq~~ 306 (957)
||+|||||+
T Consensus 224 Rla~vlQg~ 232 (232)
T cd00673 224 RLVWVLQGV 232 (232)
T ss_pred HHHHHHcCC
Confidence 999999996
No 11
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=100.00 E-value=2.3e-44 Score=380.61 Aligned_cols=226 Identities=29% Similarity=0.430 Sum_probs=205.3
Q ss_pred cceeeeEEEEEEEeCCeeeeeccCCCeEEEEecceeEEEecCCeeccceeEeccceeEEEEeEEEECCEEEEEEEeecCC
Q 002171 541 WFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGA 620 (957)
Q Consensus 541 y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~ 620 (957)
|..+++|+|+.+..+ .|+||+|+|||+|||||+|+|+|.+.++...|.++.+.+..|+|++...
T Consensus 11 y~~e~~~~v~~v~~~-------------~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~~~~~~~~~~~~I~H~~~~~--- 74 (241)
T COG2872 11 YLKEFEATVVDVEDN-------------EIVLDRTIFYPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLAEH--- 74 (241)
T ss_pred ccccceEEEEEEeCC-------------eEEEEeccccCCCCCCcCCceEEEeCCceEEEEEEEecceEEEEEecCc---
Confidence 578999999998642 6999999999999999999999999999999999999999999998632
Q ss_pred cccCCCCEEEEEEchhhhhhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHH
Q 002171 621 GRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQ 700 (957)
Q Consensus 621 ~~l~~G~~V~~~VD~erR~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~Nei 700 (957)
..+++|++|.++|||+||+++||+|||+|||++++.+.++ .+..|.++.++..|+||+.+. +++.+.++++++|++
T Consensus 75 ~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~--~~~~g~~i~~d~~~iD~~~e~--~~~~~~~v~~~~ne~ 150 (241)
T COG2872 75 AKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYG--ALTTGFEIGEDYARIDFDGED--TEDEIEEVEALANEL 150 (241)
T ss_pred ccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhcccc--ceeecceeccccccccccccc--chhhHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999988 456899999999999998543 899999999999999
Q ss_pred HHcCCCEEEEEcCHHHHHhhcCcccccCCcCC---CCEEEEEEcccccccccCCCCccccceeeeeccCccccccccccc
Q 002171 701 IKAELDVFSKEATLAEAKCINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEA 777 (957)
Q Consensus 701 I~~nlpV~~~~~~~eEA~~~~g~r~~~~e~y~---d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~ 777 (957)
|.+|+||...+++.+||.++++++++....++ ..+|+|+|+ +++++|||||||+||+|||.
T Consensus 151 v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~----------------did~qpCgGtHVk~T~EIG~ 214 (241)
T COG2872 151 VKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIG----------------DIDVQPCGGTHVKNTGEIGE 214 (241)
T ss_pred HHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEEC----------------CeeccCCCCcccCCccceEE
Confidence 99999999999999999999998876553333 479999998 57999999999999999999
Q ss_pred EEEEeeeeccCCeEEEEEEeChHHH
Q 002171 778 FALLSEEGIAKGIRRITAVTTGLAY 802 (957)
Q Consensus 778 fkI~~~~~~~kG~~RI~~vtG~~A~ 802 (957)
|+|++.++++++.+||+|.+|++|.
T Consensus 215 Iki~k~e~k~k~~~Rv~f~~~~~~~ 239 (241)
T COG2872 215 IKILKTEKKGKGNRRVYFTLGERAS 239 (241)
T ss_pred EEEEEEEEecCceEEEEEEeccccc
Confidence 9999999999999999999999764
No 12
>PLN02961 alanine-tRNA ligase
Probab=100.00 E-value=2.7e-43 Score=373.85 Aligned_cols=209 Identities=27% Similarity=0.380 Sum_probs=176.8
Q ss_pred eEEEEecceeEEEecCCeeccceeEeccc--eeEEEEeEEEECCEEEEEEEeec----CCcccCCCCEEEEEEchhhhhh
Q 002171 567 EVGIVLASSSFYAEQGGQIFDEGFIEGLF--GSFYVRNVQIYGGFVIHIGSLTE----GAGRFSVGEEVICKVDYDRRKL 640 (957)
Q Consensus 567 ~~~vvLD~T~FYpegGGQ~~D~G~I~~~~--~~~~V~dv~~~~g~i~H~~~~~~----~~~~l~~G~~V~~~VD~erR~~ 640 (957)
.+.|+||+|+|||||||||+|+|+|...+ ..++|.+|++.+|+++|++.+.. +.++|.+|++|.++|||+||+.
T Consensus 2 ~~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR~~ 81 (223)
T PLN02961 2 RIALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRRKL 81 (223)
T ss_pred CeEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHHhh
Confidence 46799999999999999999999997533 36999999999999999986531 1246889999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHH-hCCceecccccccCCceEEEecCCCCCCHHH----HHHHHHHHHHHHHcCCCEEEEEcCHH
Q 002171 641 IAPNHTCTHMLNFALREV-LGDHVDQKGSVVLPEKLRFDFSHGKPVDPEH----LRRIESIVNEQIKAELDVFSKEATLA 715 (957)
Q Consensus 641 ~m~~HTA~HLLs~AL~kv-lg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~----L~~IE~~~NeiI~~nlpV~~~~~~~e 715 (957)
+|++|||+|||++||+++ +|....++|+++ +++.++||. ..++.++ +.+||+++|++|++++||++.+++++
T Consensus 82 ~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~-~~~~~v~~~--~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~~ 158 (223)
T PLN02961 82 HSRLHSAGHLLDVCMARVGLGPLEPGKGYHF-PDGPFVEYK--GKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYD 158 (223)
T ss_pred hhccCcHHHHHHHHHHHcCCCcccccccccc-CCccceeec--ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCHH
Confidence 999999999999999997 777666788876 578889876 4577655 47999999999999999999999999
Q ss_pred HHHhhcCcccccCCc-CCCCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeeccCCeEEEE
Q 002171 716 EAKCINGLRAVFGEV-YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (957)
Q Consensus 716 EA~~~~g~r~~~~e~-y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~~kG~~RI~ 794 (957)
+|+++.+ ++.+... .++.+|+|+|+ +++.++||||||.||++||.|+|++.+. ++|.+||+
T Consensus 159 ea~~~~~-~~~~~~~~~~~~vRiV~I~----------------~~d~~~CgGTHv~nT~eig~i~I~~~~~-~kg~~Rv~ 220 (223)
T PLN02961 159 EAAELCG-GSLPDYIAKDSTPRIVKIG----------------DSPGCPCGGTHVADVSEITSVKVTQIRV-KKGVTRVS 220 (223)
T ss_pred HHHHhcC-CcCCCcCCCCCceEEEEEC----------------CCccCccCCcccCchhccccEEEEEEEe-cCCEEEEE
Confidence 9998743 2322211 14679999998 4789999999999999999999999864 58999999
Q ss_pred EE
Q 002171 795 AV 796 (957)
Q Consensus 795 ~v 796 (957)
|.
T Consensus 221 ~~ 222 (223)
T PLN02961 221 YT 222 (223)
T ss_pred Ee
Confidence 85
No 13
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=100.00 E-value=4e-34 Score=299.26 Aligned_cols=310 Identities=21% Similarity=0.260 Sum_probs=241.5
Q ss_pred eeEEEEEEEeCCeeeeeccCCCeEEEEecceeEEEecCCeeccceeEeccceeEEEEeEEEECCEEEEEEEeecCCcccC
Q 002171 545 HKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFS 624 (957)
Q Consensus 545 ~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~ 624 (957)
+++.|++|-.-+. .-.+-+.+.+.|.+|++||+|||||+|.|++ ..+.|..|.+.|...-|.+. .++.
T Consensus 24 fkt~vvsc~p~~~---kk~eieg~~i~lqdtiLfpegggqp~d~gf~----~~v~V~~VsR~G~~A~H~~~-----~~ie 91 (415)
T KOG2105|consen 24 FKTLVVSCEPTKN---KKGEIEGYEIELQDTILFPEGGGQPSDSGFL----KIVEVSHVSRFGLHAKHHVN-----DYIE 91 (415)
T ss_pred ccccccccccccC---CcceeecceeeeeeeEeccCCCCCCCccccc----cceeEEEeeccccchhhccC-----CCCC
Confidence 4567777754321 1112356889999999999999999999999 45679999888887777764 6899
Q ss_pred CCCEEEEEEchhhhhhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceE--EEecCCCCCCHHHHHHHHHHHHHHHH
Q 002171 625 VGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLR--FDFSHGKPVDPEHLRRIESIVNEQIK 702 (957)
Q Consensus 625 ~G~~V~~~VD~erR~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r--~Df~~~~~lt~e~L~~IE~~~NeiI~ 702 (957)
+|.+|...|||++|+++||+||++||+.+++.+.|.-.+ ....++ +|+ ++.+. .++|.|++..||+.+|+.|.
T Consensus 92 PGt~V~V~VD~qkR~D~MQQHsGQHLitAvad~~fKlkT--tSWelG--~~~sa~e~~~-~~mTaeqvaaieqsvNe~I~ 166 (415)
T KOG2105|consen 92 PGTTVEVAVDEQKRMDYMQQHSGQHLITAVADHLFKLKT--TSWELG--RFRSAIELDT-PSMTAEQVAAIEQSVNEKIR 166 (415)
T ss_pred CCCeEEEEecHHHHhHHHHHhcchhHHHHHHHhhhccce--eeeecc--ceeeccccCC-CCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999886432 223332 333 33333 47999999999999999999
Q ss_pred cCCCEEEEEcCHHH--HHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEE
Q 002171 703 AELDVFSKEATLAE--AKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFAL 780 (957)
Q Consensus 703 ~nlpV~~~~~~~eE--A~~~~g~r~~~~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI 780 (957)
.-+|+.+.+.+.++ ..+..+ +-++. .-.+++|+|.|+ +.|.++||||||+||++|+.|+|
T Consensus 167 d~~~~~v~E~sl~d~eVeqVS~-~~~~D-~haG~iRvvnI~----------------~vDSN~CCGTHvs~~Sdl~vI~I 228 (415)
T KOG2105|consen 167 DRLPVNVRELSLDDPEVEQVSG-RGLPD-DHAGPIRVVNIE----------------GVDSNMCCGTHVSNLSDLQVIKI 228 (415)
T ss_pred hccchheeecccCCcchhhccC-CCCcc-cccCceEEEeec----------------CccCCccccccccchhhcceEEE
Confidence 99999998877643 334332 11111 112589999998 57899999999999999999999
Q ss_pred EeeeeccCCeEEEEEEeChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCChHHHHHHHHHHHHH
Q 002171 781 LSEEGIAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQ 860 (957)
Q Consensus 781 ~~~~~~~kG~~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~~~~~~g~~i~l~~~~~l~~~l~~l~~~ 860 (957)
++.++..+|-+-+.++.|.|++++.+.....++.+..+++|.. +++.+++.+++++
T Consensus 229 Lgtekg~k~rtN~~f~~GnRV~~~mersh~t~~a~taLLkCga------------------------ed~vEavkk~qns 284 (415)
T KOG2105|consen 229 LGTEKGKKNRTNLIFLSGNRVLKWMERSHGTEKALTALLKCGA------------------------EDHVEAVKKLQNS 284 (415)
T ss_pred eeccccccCccceEEEeccHHHHHHHHhcchHHHHHHHHhcch------------------------HHHHHHHHHHHHH
Confidence 9998888886778888899999999999999999998888753 4677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEcccCCCHHHHHHHHHHHH
Q 002171 861 VRKAQKKVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAAVREAVLKVI 916 (957)
Q Consensus 861 lk~~~ke~~~l~~k~a~~~a~~l~~~~~~~~~~~iv~~~~~~~d~~~Lr~la~~l~ 916 (957)
++.++|...++...+|...+..+.....-.|. +|..+. ..+.+.++-+++.+.
T Consensus 285 tk~LqKnn~~~lr~LA~~iahsL~Ns~d~gG~-vi~~~~--e~~sE~~N~ianei~ 337 (415)
T KOG2105|consen 285 TKILQKNNLNLLRDLAVHIAHSLRNSPDWGGV-VILHRK--EGDSEFMNIIANEIG 337 (415)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhcCcCcCce-EEeehh--hccHHHHHHHhhccC
Confidence 99999999999999999888888664333443 333333 357777766666553
No 14
>PLN02837 threonine-tRNA ligase
Probab=99.95 E-value=7.1e-27 Score=281.04 Aligned_cols=220 Identities=21% Similarity=0.299 Sum_probs=188.7
Q ss_pred CEEEEEEchhhhhhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCC
Q 002171 627 EEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELD 706 (957)
Q Consensus 627 ~~V~~~VD~erR~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlp 706 (957)
.+|++.+|...|...+.+||++|||++|++++||....+.|+.+ ++++||||+. .++|++++.+||++||++|.+|+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~-~~g~y~D~~~-~~lt~edl~~IEk~m~~iI~~n~p 107 (614)
T PLN02837 30 ERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWI-ENGFYYDFDM-EPLTDKDLKRIKKEMDRIISRNLP 107 (614)
T ss_pred ceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCCEEEEecC-CCCCHHHHHHHHHHHHHHHHcCCC
Confidence 57999999999999999999999999999999987667788665 5899999986 689999999999999999999999
Q ss_pred EEEEEcCHHHHHhhcCcc------cccCCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCccccccccc--ccE
Q 002171 707 VFSKEATLAEAKCINGLR------AVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREA--EAF 778 (957)
Q Consensus 707 V~~~~~~~eEA~~~~g~r------~~~~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeI--g~f 778 (957)
|+..+++++||.+++... .+......+.||+++|++ .+.++|+||||+|||+| +.|
T Consensus 108 I~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig~----------------~~~D~c~GpHv~sTg~I~~~~~ 171 (614)
T PLN02837 108 LVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIGE----------------EWWDLCAGPHVERTGKINKKAV 171 (614)
T ss_pred EEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEECC----------------eEEEecCCCCcccccccccceE
Confidence 999999999999875210 011111124699999983 35788999999999999 999
Q ss_pred EEEeeeec-------cCCeEEEEEEeChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHh--hh-cCCCCcCCCChH
Q 002171 779 ALLSEEGI-------AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLK--SK-VDGAAIPAPKKA 848 (957)
Q Consensus 779 kI~~~~~~-------~kG~~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~~--~~-~~g~~i~l~~~~ 848 (957)
+|++.++. +..++||++++++ ..++++++++.++++.++||++|++++++|. .. .+|+++|+|+|.
T Consensus 172 kl~~~~g~ywrg~~~~~~l~ri~g~~~~----~~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G~ 247 (614)
T PLN02837 172 ELESVAGAYWRGDEKNQMLQRIYGTAWE----SEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGA 247 (614)
T ss_pred EEEEeehhhhcccccCcceEEEEEEecC----CHHHHHHHHHHHHHhhhCCHHHHHHHcCCcccCcCcCCcceEEechHH
Confidence 99999884 5789999999999 8889999999999999999999999988873 23 589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002171 849 DIRAKIALLQNQVRKAQKKVAEE 871 (957)
Q Consensus 849 ~l~~~l~~l~~~lk~~~ke~~~l 871 (957)
.|.++|.++ +++...+.++.
T Consensus 248 ~l~~~L~~~---~~~~~~~~G~~ 267 (614)
T PLN02837 248 IVRHIIEDS---WKKMHFEHGYD 267 (614)
T ss_pred HHHHHHHHH---HHHHHHHCCCE
Confidence 999999999 56666555553
No 15
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=3e-25 Score=269.18 Aligned_cols=239 Identities=20% Similarity=0.265 Sum_probs=193.9
Q ss_pred EEEecCCeeccceeEeccceeEEEEeEEEECCEEEEEEEeecCCcccCCCCEEEEEEchhhhhhHHHHhhHHHHHHHHHH
Q 002171 577 FYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALR 656 (957)
Q Consensus 577 FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTA~HLLs~AL~ 656 (957)
..+..+|.+.|.-+...+++.++.++.. |.+.+ .+.+||++|||++|++
T Consensus 40 v~a~vn~~l~dL~~~i~~d~~i~fv~~~-----------------------------~~~g~--~iy~hS~~hlL~~A~~ 88 (639)
T PRK12444 40 VAGKVNDKLYDLRRNLEEDAEVEIITID-----------------------------SNEGV--EIARHSAAHILAQAVK 88 (639)
T ss_pred EEEEECCEEEEcCcccCCCCeEEEecCC-----------------------------ChHHH--HHHHHHHHHHHHHHHH
Confidence 3455567777777776666665555422 22333 2579999999999999
Q ss_pred HHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhcCcc------cccCCc
Q 002171 657 EVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLR------AVFGEV 730 (957)
Q Consensus 657 kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~r------~~~~e~ 730 (957)
++||......|+.+ ++++||||+...++|++++.+||++||++|.+|+||+..+++++||.+++... .++...
T Consensus 89 ~~~~~~~~~i~~~~-~~g~y~d~~~~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~~K~~ll~~~ 167 (639)
T PRK12444 89 RLYGDVNLGVGPVI-ENGFYYDMDLPSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAI 167 (639)
T ss_pred HHcCCcEEEeCCcC-CCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHhhcCCchHHHHHhcC
Confidence 99998666667655 79999999977789999999999999999999999999999999999986421 111111
Q ss_pred CC-CCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeec-------cCCeEEEEEEeChHHH
Q 002171 731 YP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTGLAY 802 (957)
Q Consensus 731 y~-d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~-------~kG~~RI~~vtG~~A~ 802 (957)
.. +.|+++++++ ++++|+||||+|||+|+.|+|+++++. +++++||+++|++
T Consensus 168 ~~~~~v~iy~~~~-----------------~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a~~--- 227 (639)
T PRK12444 168 PSGESITLYKQGE-----------------FVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVAFS--- 227 (639)
T ss_pred CCCCeEEEEEECC-----------------EEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEecC---
Confidence 11 3589988873 467899999999999999999998886 6899999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccchhHHHHHHH--hhhcCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 002171 803 KAFEAACSLEKEVDDASKIEGSLLEKTVASL--KSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEE 871 (957)
Q Consensus 803 ~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~--~~~~~g~~i~l~~~~~l~~~l~~l~~~lk~~~ke~~~l 871 (957)
..++++++++.++++.+++|++|+++++.| .+.++|+++|+|++..+.+.|+++ +++..++.++.
T Consensus 228 -~~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~---~~~~~~~~G~~ 294 (639)
T PRK12444 228 -SQKELEEYLHFVEEAAKRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAF---LREIQKEYNYQ 294 (639)
T ss_pred -CHHHHHHHHHHHHHhccCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHH---HHHHHHHcCCE
Confidence 788899999999999999999999998855 556899999999999999998888 66666655553
No 16
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.93 E-value=3.7e-25 Score=265.62 Aligned_cols=205 Identities=25% Similarity=0.338 Sum_probs=174.7
Q ss_pred HHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhc
Q 002171 642 APNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCIN 721 (957)
Q Consensus 642 m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~ 721 (957)
+.+|||+|||++|++++||......|+ ..++++||||+...++|++++.+||+.||++|++|+||++.+++++||.+++
T Consensus 8 ~~~hS~~hlL~~A~~~~~~~~~~~~~~-~~~~g~~~d~~~~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v~~eeA~~~f 86 (575)
T PRK12305 8 VIRHSAAHVLAQAVQELFPDAKLGIGP-PIEDGFYYDFDVPEPFTPEDLKKIEKKMKKIIKRGLPFEREEVSREEAREEF 86 (575)
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEeCC-CcCCeEEEEeeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHhC
Confidence 679999999999999999876555664 4579999999987789999999999999999999999999999999999986
Q ss_pred Cccc----ccCCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeec-------cCCe
Q 002171 722 GLRA----VFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGI 790 (957)
Q Consensus 722 g~r~----~~~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~-------~kG~ 790 (957)
.... ++....++.||++++++ + .++|+||||+|||+||.|+|+++++. ++++
T Consensus 87 ~~~~~k~~l~~~~~~~~vri~~ig~----------------~-~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l 149 (575)
T PRK12305 87 ANEPYKLELIDDIPEEGITIYDNGD----------------F-EDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQL 149 (575)
T ss_pred CcChhHHHhhhhcCCCeEEEEEECC----------------E-EEECCCCCCCCccCCceeEEEEEcceEECCCCCCcce
Confidence 4211 12222334699999983 3 47899999999999999999998554 7899
Q ss_pred EEEEEEeChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHh---hhcCCCCcCCCChHHHHHHHHHHHHHHHHHHHH
Q 002171 791 RRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLK---SKVDGAAIPAPKKADIRAKIALLQNQVRKAQKK 867 (957)
Q Consensus 791 ~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~~---~~~~g~~i~l~~~~~l~~~l~~l~~~lk~~~ke 867 (957)
+||++++++ ..+++++++++++++.++||++|+++++.|. ...+|+++|+|++..+.+.|+++ +++..++
T Consensus 150 ~Ri~g~~~~----~~~~l~~~~~~~~e~~~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~---~~~~~~~ 222 (575)
T PRK12305 150 QRIYGTAWE----TKEELKEYLKRLEEAKKRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDY---LRKEHLK 222 (575)
T ss_pred EEEEEEecC----CHHHHHHHHHHHHHhhhccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHH---HHHHHHH
Confidence 999999999 7788999999999999999999999999884 23789999999999999999999 6666666
Q ss_pred HHHH
Q 002171 868 VAEE 871 (957)
Q Consensus 868 ~~~l 871 (957)
.++.
T Consensus 223 ~Gy~ 226 (575)
T PRK12305 223 RGYE 226 (575)
T ss_pred cCCE
Confidence 6653
No 17
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=5.2e-24 Score=258.71 Aligned_cols=210 Identities=23% Similarity=0.340 Sum_probs=174.9
Q ss_pred hhhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHH
Q 002171 638 RKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEA 717 (957)
Q Consensus 638 R~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eEA 717 (957)
+-..+.+||++|||++|++++||......|++ .++++||||+...++|++++.+||++||++|++|+||...++++++|
T Consensus 66 ~g~~~y~hS~~hll~~A~~~~~~~~~~~~~~~-~~~g~y~d~~~~~~lt~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA 144 (638)
T PRK00413 66 EGLEIIRHSAAHLLAQAVKRLYPDAKLTIGPV-IENGFYYDFDRERPFTPEDLEAIEKEMKEIIKENYPIEREVVSREEA 144 (638)
T ss_pred hhHHHHhhhHHHHHHHHHHHHcCCceEEECCc-cCCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHH
Confidence 33447899999999999999998655556654 46999999997778999999999999999999999999999999999
Q ss_pred HhhcCcc------cccCCcCC-CCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeec----
Q 002171 718 KCINGLR------AVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI---- 786 (957)
Q Consensus 718 ~~~~g~r------~~~~e~y~-d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~---- 786 (957)
.+++... .++..... +.||++++++ .+++|+||||+|||+||.|+|+++++.
T Consensus 145 ~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~-----------------~~d~c~G~hv~~Tg~i~~f~i~~~~~g~~l~ 207 (638)
T PRK00413 145 IELFKDRGEPYKVELIEEIPEDEEISLYRQGE-----------------FVDLCRGPHVPSTGKIKAFKLLKVAGAYWRG 207 (638)
T ss_pred HHHHHhcCCccHHHHhhcCCCCCeEEEEEECC-----------------EEEECCCCCCCcccCCceeEEEEEcceEEcC
Confidence 9986431 11111112 2689988873 368899999999999999999998654
Q ss_pred ---cCCeEEEEEEeChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH--hhhcCCCCcCCCChHHHHHHHHHHHHHH
Q 002171 787 ---AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASL--KSKVDGAAIPAPKKADIRAKIALLQNQV 861 (957)
Q Consensus 787 ---~kG~~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~--~~~~~g~~i~l~~~~~l~~~l~~l~~~l 861 (957)
+++++||++++++ ..+++.++++.++++.+++|+.++++++.| .+..+|++.|+|++..+.+.|+++ +
T Consensus 208 ~~~~~~l~Ri~g~~~~----~~~~l~~~~~~~~e~~~~~h~~l~~~~~~~~~~~~~~G~~~~lp~~~~~~~~i~~~---~ 280 (638)
T PRK00413 208 DSKNKMLQRIYGTAFA----DKKELDAYLHRLEEAKKRDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERY---I 280 (638)
T ss_pred CCcchheEEEEeeecC----CHHHHHHHHHHHHHhccccHHHHHHhcCEEEecCCCCcceEEcccHHHHHHHHHHH---H
Confidence 7899999999999 677889999999999999999999998875 566799999999999999999998 6
Q ss_pred HHHHHHHHHHH
Q 002171 862 RKAQKKVAEEN 872 (957)
Q Consensus 862 k~~~ke~~~l~ 872 (957)
++..+..++.+
T Consensus 281 ~~~~~~~Gy~e 291 (638)
T PRK00413 281 RRKLRKAGYQE 291 (638)
T ss_pred HHHHHHCCCEE
Confidence 66666655533
No 18
>PLN02908 threonyl-tRNA synthetase
Probab=99.91 E-value=1.1e-23 Score=256.57 Aligned_cols=240 Identities=20% Similarity=0.244 Sum_probs=194.2
Q ss_pred ceeEEEecCCeeccceeEeccceeEEEEeEEEECCEEEEEEEeecCCcccCCCCEEEEEEchhhhhhHHHHhhHHHHHHH
Q 002171 574 SSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNF 653 (957)
Q Consensus 574 ~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~erR~~~m~~HTA~HLLs~ 653 (957)
..+.-+..+|++.|.-+...+++.++.++.. |.+.+. +.+||++|||..
T Consensus 84 ~~~v~a~Vng~l~dL~~~l~~d~~le~l~~~-----------------------------~~eg~~--~y~hS~ahlL~~ 132 (686)
T PLN02908 84 NSALIAQVDGVLWDMTRPLEGDCKLKLFKFD-----------------------------DDEGRD--TFWHSSAHILGE 132 (686)
T ss_pred hhcEEEEECCEEeecCccccCCCeeEEeccc-----------------------------cHHHHH--HHHHHHHHHHHH
Confidence 3444566689999998887777776666432 223332 689999999999
Q ss_pred HHHHHhCCceecccccccC-CceEEEecCC-CCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhcCccc----cc
Q 002171 654 ALREVLGDHVDQKGSVVLP-EKLRFDFSHG-KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGLRA----VF 727 (957)
Q Consensus 654 AL~kvlg~~~~q~Gs~v~~-d~~r~Df~~~-~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~r~----~~ 727 (957)
|++++||.. ...|+++++ +++||||..+ .++|++++.+||++|+++|++++||+...++++||.++|.... +.
T Consensus 133 A~~~~~~~~-l~ig~~i~~~~Gfy~d~~~~~~~~t~edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll 211 (686)
T PLN02908 133 ALELEYGCK-LCIGPCTTRGEGFYYDAFYGDRTLNEEDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEII 211 (686)
T ss_pred HHHHHhCCe-EEecCccccCCcEEEEeecCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHH
Confidence 999999754 467877754 8999998743 4799999999999999999999999999999999998764211 11
Q ss_pred CCcCC--CCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeec-------cCCeEEEEEEeC
Q 002171 728 GEVYP--DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTT 798 (957)
Q Consensus 728 ~e~y~--d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~-------~kG~~RI~~vtG 798 (957)
.. .+ +.+++.++|+ .+++|+||||+|||+|+.|+|++.++. +..++||+++++
T Consensus 212 ~~-~~~~~~v~vY~~g~-----------------~~D~c~Gphv~sTg~ik~f~l~~~~~~~~lg~~~~~~lqRi~G~sf 273 (686)
T PLN02908 212 ND-LPEDATITVYRCGP-----------------LVDLCRGPHIPNTSFVKAFACLKASSAYWRGDVDRESLQRVYGISF 273 (686)
T ss_pred hh-CCCCCeeEEEEECC-----------------EEEecCCCCCCCCCccceeEEEEecceEEcCCCcchhhEEEeeecc
Confidence 11 22 3578888873 467899999999999999999998854 468999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH--hhhcCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 002171 799 GLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASL--KSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAE 870 (957)
Q Consensus 799 ~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~--~~~~~g~~i~l~~~~~l~~~l~~l~~~lk~~~ke~~~ 870 (957)
+ ..++++++++.++++.++||+.|+++++.| .+..+|+++|+|.|..|++.|.++ +++..++.++
T Consensus 274 p----~~~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l~~~---~~~~~~~~G~ 340 (686)
T PLN02908 274 P----DKKLLKEYKHRIEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKLMDF---IREQYWERGY 340 (686)
T ss_pred C----ChHHHHHHHhhhhhccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHHHHH---HHHHHHHcCC
Confidence 9 778899999999999999999999998876 556799999999999999999999 6666655554
No 19
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.88 E-value=3.6e-22 Score=239.29 Aligned_cols=204 Identities=25% Similarity=0.279 Sum_probs=174.7
Q ss_pred HhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhcCc
Q 002171 644 NHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL 723 (957)
Q Consensus 644 ~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~ 723 (957)
+||++|||++|+++++|....+.|+.+ ++++||||+...++|++++.+||+.||++|.+++||....++++||.+++..
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i-~~g~~~df~~~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~~ 79 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVV-EDGFYYDFELDRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAFKV 79 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCc-CCCceecccCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHHhc
Confidence 699999999999999998777888777 6789999997778999999999999999999999999999999999997640
Q ss_pred -----ccccCCc-CCCCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeec-------cCCe
Q 002171 724 -----RAVFGEV-YPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGI 790 (957)
Q Consensus 724 -----r~~~~e~-y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~-------~kG~ 790 (957)
..++.+. +.+.|+++.++ ++++++|+||||+|||.|+.|+|++..+. ++.+
T Consensus 80 ~~~~k~~Ll~~~~~~~~v~vy~~g----------------~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l 143 (563)
T TIGR00418 80 LEPYKLELLDEIPNGVKRTPYGWG----------------KAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKML 143 (563)
T ss_pred cChhHHHHHhcCCCCCeEEEEEeC----------------CEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCce
Confidence 0122222 34679999987 45789999999999999999999987765 5689
Q ss_pred EEEEEEeChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhh---cCCCCcCCCChHHHHHHHHHHHHHHHHHHHH
Q 002171 791 RRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSK---VDGAAIPAPKKADIRAKIALLQNQVRKAQKK 867 (957)
Q Consensus 791 ~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~~~~---~~g~~i~l~~~~~l~~~l~~l~~~lk~~~ke 867 (957)
+||++++++ ..++++++++.++++..++|++|+++++.|.-. .+|.+.|+|.+..+.+.|+++ +++..++
T Consensus 144 ~Ri~g~~~~----~~~~l~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~---~~~~~~~ 216 (563)
T TIGR00418 144 QRIYGTAWA----DKKQLAAYLLRLEEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDF---VRQKQIK 216 (563)
T ss_pred EeeeeccCC----CHHHHHHHHHhhhhhhcCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHH---HHHHHHH
Confidence 999999999 778899999999999999999999998887433 689999999999999999999 6666555
Q ss_pred HHHH
Q 002171 868 VAEE 871 (957)
Q Consensus 868 ~~~l 871 (957)
.++.
T Consensus 217 ~G~~ 220 (563)
T TIGR00418 217 YGYM 220 (563)
T ss_pred cCCE
Confidence 5543
No 20
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=3.8e-21 Score=226.49 Aligned_cols=205 Identities=24% Similarity=0.328 Sum_probs=169.7
Q ss_pred HHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhc
Q 002171 642 APNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCIN 721 (957)
Q Consensus 642 m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~ 721 (957)
..+||++|||..|+.++++. ...| .+.+++||+||+...++|++++.+||+.|+++|.++++|....+++++|++.|
T Consensus 28 ~~rhs~ah~l~~av~~l~p~--~~~g-p~ie~gfyyd~~~~~~~~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~f 104 (589)
T COG0441 28 IIRHSCAHVLAQAVKRLYPD--VTIG-PVIEEGFYYDFDVKEPITPEDLLKIEKEMKEIAKENLPIEREVVSREEARAPF 104 (589)
T ss_pred hhhhHHHHHHHHHHHHhCCC--cccc-CcccceeEEeeccCCCCCHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHHHh
Confidence 46899999999999999998 5677 67789999999988889999999999999999999999999999999999986
Q ss_pred Cccccc-CCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeec-------cCCeEEE
Q 002171 722 GLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRI 793 (957)
Q Consensus 722 g~r~~~-~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~-------~kG~~RI 793 (957)
+--+.+ -+..+.++.+.+- +...++|.||||+|||.| .|++++.++. +++++||
T Consensus 105 ~~yK~~~i~~~~~~~s~y~~-----------------~~~~dlc~gph~~~t~~i-~fkl~~~~~ayw~g~~~~~~l~ri 166 (589)
T COG0441 105 GPYKAELIDCKGHPLSEYSQ-----------------GEFVDLCRGPHVPSTGKI-AFKLLKLAGAYWRGDENNEMLQRI 166 (589)
T ss_pred hhhHHHHHhcCCCCceeEec-----------------CccccccCCCCCCccceE-EEEEEEecchhhccCCCCcceeEE
Confidence 511100 0001122222221 226899999999999999 9999998865 6789999
Q ss_pred EEEeChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHh---hhcCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 002171 794 TAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLK---SKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAE 870 (957)
Q Consensus 794 ~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~~---~~~~g~~i~l~~~~~l~~~l~~l~~~lk~~~ke~~~ 870 (957)
+++++. ...+++.+++.++++.++||+++++++++|. ...+|+++|+|+|+.+++.|+++ ++....+.++
T Consensus 167 ygta~~----~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~ir~~le~y---~~~~~~~~Gy 239 (589)
T COG0441 167 YGTAFA----DKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIRNLLEDY---VRTKLRSYGY 239 (589)
T ss_pred eccccC----CHHHHHHHHhhhhhccCCchHhHHHhhcceeeccccCCcceEECCCcccHHHHHHHH---HHHHHHhcCc
Confidence 999997 7778899999999999999999999999983 34799999999999999999999 7777766666
Q ss_pred HHHH
Q 002171 871 ENLQ 874 (957)
Q Consensus 871 l~~k 874 (957)
....
T Consensus 240 ~~V~ 243 (589)
T COG0441 240 QEVK 243 (589)
T ss_pred eEec
Confidence 5543
No 21
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=99.29 E-value=3.8e-12 Score=101.45 Aligned_cols=44 Identities=52% Similarity=0.869 Sum_probs=37.5
Q ss_pred EEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeeccCCeEEEE
Q 002171 735 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (957)
Q Consensus 735 VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~~kG~~RI~ 794 (957)
||+|+|+ +++.++||||||+|||+||.|+|++.++.++|++|||
T Consensus 1 vRvv~i~----------------~~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIG----------------DFDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY 44 (44)
T ss_dssp EEEEEET----------------TTEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred CEEEEEC----------------CeeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence 6999998 4789999999999999999999999999999999997
No 22
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.28 E-value=6.3e-12 Score=149.41 Aligned_cols=108 Identities=14% Similarity=0.191 Sum_probs=96.4
Q ss_pred ceeeeeccC-cccccccccccEEEEeeeec----cCCeEEEEEEeChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHH
Q 002171 758 SISAELCGG-THLSNTREAEAFALLSEEGI----AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVAS 832 (957)
Q Consensus 758 ~~~~elCgG-THV~nTgeIg~fkI~~~~~~----~kG~~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~ 832 (957)
+..+++|.| |||+|||.|+.|+|++.++. ++.++||++++++ ..++++++++.++++.++||++||+++++
T Consensus 74 ~~~~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~f~----~~~~l~~~~~~~eea~~rdHr~lg~~l~l 149 (545)
T PRK14799 74 GNKVSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVAFE----TEEQLKDYLTWLEKAEETDHRLIGEKLDL 149 (545)
T ss_pred cCceeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEeecC----CHHHHHHHHHHHHhcccCCHHHHHHHcCC
Confidence 347899999 99999999999999999986 4789999999999 88899999999999999999999999998
Q ss_pred H--hhh-cCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002171 833 L--KSK-VDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEEN 872 (957)
Q Consensus 833 ~--~~~-~~g~~i~l~~~~~l~~~l~~l~~~lk~~~ke~~~l~ 872 (957)
| .+. .+|+++|+|++..|++.|.++ +++..++.++.+
T Consensus 150 f~~~~~~~~G~~~~lP~G~~i~~~L~~~---~r~~~~~~Gy~e 189 (545)
T PRK14799 150 FSFHEEAGSGLVLFHPKGQTIRNELIAF---MREINDSMGYQE 189 (545)
T ss_pred cccccccCCcceEEcChHHHHHHHHHHH---HHHHHHHcCCeE
Confidence 7 323 799999999999999999999 777776666644
No 23
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.7e-11 Score=137.56 Aligned_cols=144 Identities=19% Similarity=0.247 Sum_probs=111.7
Q ss_pred HHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhc
Q 002171 642 APNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCIN 721 (957)
Q Consensus 642 m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~ 721 (957)
..+||++|+|..|+.+.+|.+ .+.|..+ ++|||+|+ . ..++.++
T Consensus 68 vfwhssahvlg~a~e~~~g~~-lc~Gpp~-~~gf~yd~-~-~~i~~~d-------------------------------- 111 (560)
T KOG1637|consen 68 VFWHSSAHVLGEALEQEYGAH-LCIGPPI-EEGFYYDM-L-DEISSND-------------------------------- 111 (560)
T ss_pred eeeehhhhHhhHHHHHhcCee-EeeCCCC-cCceehhh-h-ccccccc--------------------------------
Confidence 479999999999999999976 5788654 68999986 3 2221111
Q ss_pred CcccccCCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeeccCCeEEEEEEeChHH
Q 002171 722 GLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLA 801 (957)
Q Consensus 722 g~r~~~~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~~kG~~RI~~vtG~~A 801 (957)
||. ++ +|||++||.|+.|+|++.++. =-.+-+++
T Consensus 112 ---------~~~---------------------------~e---~phi~~tg~ika~k~~~nss~-----yw~~~sfp-- 145 (560)
T KOG1637|consen 112 ---------FPS---------------------------IE---APHIRHTGKIKAFKILKNSSA-----YWEGDSFP-- 145 (560)
T ss_pred ---------ccc---------------------------cc---cccccccceeeeeeeeccchh-----hhccccCC--
Confidence 110 11 289999999999999987665 11122777
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHH--hhhcCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002171 802 YKAFEAACSLEKEVDDASKIEGSLLEKTVASL--KSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEEN 872 (957)
Q Consensus 802 ~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~--~~~~~g~~i~l~~~~~l~~~l~~l~~~lk~~~ke~~~l~ 872 (957)
..++++++.+..+++..+|||+|+++.++| ++..||.+||+|+|..|+++|-++ ++...++.++.+
T Consensus 146 --~~k~~k~~~~~~~Ea~~rdHRkig~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~f---ir~ey~~rGf~E 213 (560)
T KOG1637|consen 146 --DPKQLKEWEKFQEEAKKRDHRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDF---IRAEYRKRGFTE 213 (560)
T ss_pred --CHHHHHHHHhhchhhhhhhhhhhhhhhhheeeccCCCcceeeccCcchHHHHHHHH---HHHHHHhcCCce
Confidence 677888999999999999999999998876 667899999999999999999999 777766666544
No 24
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=98.97 E-value=5e-10 Score=89.09 Aligned_cols=44 Identities=55% Similarity=0.857 Sum_probs=40.1
Q ss_pred EEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeeccCCeEEEE
Q 002171 735 VRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRIT 794 (957)
Q Consensus 735 VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~~kG~~RI~ 794 (957)
+|+|.|+ +++.++|+||||+||++||.|+|++.++.+.+++||+
T Consensus 1 vriv~i~----------------~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~ 44 (44)
T smart00863 1 VRVVSIG----------------DFDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY 44 (44)
T ss_pred CEEEEEC----------------CEEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence 5888998 4789999999999999999999999999888889985
No 25
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=95.86 E-value=0.029 Score=58.27 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccCCCCC--------ccccc---ccccccccccc-CCCCC--CCcccccccccccc
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--------LLFAN---AGMNQYKPIFL-GTADP--NTQLSKLTRACNTQ 126 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~~d~~--------llf~n---AGm~~fk~~fl-G~~~p--~~~~~~~~r~~~~Q 126 (957)
+.+.+.+.++|.+.|+..+-.+++++..+-. +.+.| ..+..+.|-.+ +.... .+......|+.-.+
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig 82 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIG 82 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEEc
Confidence 4678889999999999999999998742210 11111 01111222111 10000 00000124788899
Q ss_pred cccccCCCCCCCCCCCCCCCccccccccccccccccc-----HHHHHHHHHHHchhccCCCC
Q 002171 127 KCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYF-----KNEAIEWAWELLTKVYRLPA 183 (957)
Q Consensus 127 kCiR~ggkhnDl~~VG~~~rH~TfFeMlGn~sfgdYf-----K~eai~~awe~lt~~l~l~~ 183 (957)
+|.|.. -..-+ .+|..-|.|+|-..+|... -.+++..++++|. .+|++.
T Consensus 83 ~vfr~e-----~~~~~--~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~-~lg~~~ 136 (211)
T cd00768 83 PAFRNE-----GGRRG--LRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLR-ALGIKL 136 (211)
T ss_pred ceeecC-----CCccc--cccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHH-HcCCCc
Confidence 999962 11111 3677889999999998643 3678889999986 678743
No 26
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=95.79 E-value=0.075 Score=57.26 Aligned_cols=177 Identities=21% Similarity=0.289 Sum_probs=102.1
Q ss_pred cCCChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCCCCCCcccccccccccccccccC-C
Q 002171 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-G 133 (957)
Q Consensus 56 ~~~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-g 133 (957)
+.|+-.+|-.+--+|+.++|..++.++.+= +.|| .|-|. |+..--|. | -+++-+|+|.|.. |
T Consensus 2 ~~~~fQ~iI~~Lq~fWa~~GC~i~qPyD~E---------vGAG--T~~P~Tflr~Lgpe-p----w~vaYvqPsRRP~DG 65 (283)
T PRK09348 2 KKMTFQDIILTLQDYWADQGCVILQPYDME---------VGAG--TFHPATFLRALGPE-P----WNAAYVQPSRRPTDG 65 (283)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEECCcccc---------cccc--cCCHHHHHHhcCCC-c----cccccccCCCCCCCC
Confidence 358899999999999999999999877652 2344 67774 33322221 1 3679999999972 1
Q ss_pred CCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcC
Q 002171 134 KHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 213 (957)
Q Consensus 134 khnDl~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~~ 213 (957)
+.- +|.-+= .||.=|..+=-=|-.+ ..+.=.+-| +.+||||..
T Consensus 66 RYG--eNPNRL-q~y~QfQVilKPsP~n-----iQelYL~SL-~~lGid~~~---------------------------- 108 (283)
T PRK09348 66 RYG--ENPNRL-QHYYQFQVILKPSPDN-----IQELYLGSL-EALGIDPLE---------------------------- 108 (283)
T ss_pred CcC--CCchhh-hhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc----------------------------
Confidence 111 233332 3444444432222222 111111111 246776654
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccC
Q 002171 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTG 293 (957)
Q Consensus 214 ~~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDtG 293 (957)
|=+|| .+|| |+-=.-|--|-==|+-.| | +||=-.-+.| + --| .++..-.+.-=
T Consensus 109 ---hDIRF-VEDn-WEsPTLGAwGlGWEVWld---G--------------MEITQFTYFQ--Q-vGG--i~~~pv~~EIT 161 (283)
T PRK09348 109 ---HDIRF-VEDN-WESPTLGAWGLGWEVWLD---G--------------MEVTQFTYFQ--Q-VGG--IECKPVTGEIT 161 (283)
T ss_pred ---cceeE-eecC-CCCCcccccccceEEEEC---C--------------eeeeeeeeee--e-eCC--eeccccceeee
Confidence 22344 2455 443112555655666655 1 6665332222 2 223 33555567778
Q ss_pred chHHHHHHHHhCCCCCccc
Q 002171 294 LGFERLTSILQNKMSNYDT 312 (957)
Q Consensus 294 mGlERl~~vlq~~~s~ydt 312 (957)
+||||||+.|||+.|+||.
T Consensus 162 YGLERiamylQ~vd~v~dl 180 (283)
T PRK09348 162 YGLERLAMYLQGVDNVYDL 180 (283)
T ss_pred hhHHHHHHHHhCCCceeee
Confidence 9999999999999999996
No 27
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=94.75 E-value=0.25 Score=53.68 Aligned_cols=175 Identities=19% Similarity=0.304 Sum_probs=98.9
Q ss_pred CChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCCCCCCcccccccccccccccccC-CCC
Q 002171 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKH 135 (957)
Q Consensus 58 ~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-gkh 135 (957)
|+-.+|-.+--+|+.++|..++.++.+= +.|| .|-|. |+..--|. | -+++-+|+|.|.. |+.
T Consensus 1 m~fQ~iI~~Lq~fWa~~GC~i~QPyD~E---------vGAG--T~hPaTflralgpe-p----w~vAYVqPsRRP~DGRY 64 (293)
T TIGR00388 1 QTFQGLILKLQEYWANQGCLIVQPYDME---------KGAG--TMHPMTFLRSLGPE-P----WAVAYVEPSRRPTDGRY 64 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCcccc---------cccc--cCCHHHHHHhcCCC-c----ceeccccCCCCCCCCCC
Confidence 5678899999999999999999877652 3344 67774 33322221 1 3689999999972 111
Q ss_pred CCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCCC
Q 002171 136 NDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPA 215 (957)
Q Consensus 136 nDl~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~~~~ 215 (957)
- +|.-+- .||.=|..+=-=|-.+ ..+.=.+-| +.+||||..
T Consensus 65 G--eNPNRL-q~yyQfQVilKPsP~n-----iQelYL~SL-~~lGid~~~------------------------------ 105 (293)
T TIGR00388 65 G--ENPNRL-QHYYQFQVVIKPSPDN-----IQELYLDSL-RALGIDPTE------------------------------ 105 (293)
T ss_pred C--CCchhh-hheeeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc------------------------------
Confidence 1 333333 3444454432223222 111111111 245666653
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCch
Q 002171 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (957)
Q Consensus 216 ~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDtGmG 295 (957)
|=+|| .+|| |+-=.-|--|===|+-.| | +||=-.-| |.+ .-| + ++..-.+.-=+|
T Consensus 106 -hDIRF-VEDn-WEsPTLGAwGlGWEVWld---G--------------MEITQFTY--FQQ-vGG-i-~~~pv~~EITYG 160 (293)
T TIGR00388 106 -HDIRF-VEDN-WENPTLGAWGLGWEVWLD---G--------------MEVTQFTY--FQQ-VGG-L-ECKPVSVEITYG 160 (293)
T ss_pred -cCeeE-eecC-CCCCcccccccccEEEEC---C--------------eeeeeeee--eee-eCC-e-eccccceeeehh
Confidence 22444 2455 442112555555666655 1 56643222 222 223 2 344445677899
Q ss_pred HHHHHHHHhCCCCCccc
Q 002171 296 FERLTSILQNKMSNYDT 312 (957)
Q Consensus 296 lERl~~vlq~~~s~ydt 312 (957)
|||||+.|||+.|+||.
T Consensus 161 LERiaMylQ~vd~v~dl 177 (293)
T TIGR00388 161 LERLAMYIQGVENVYDL 177 (293)
T ss_pred HHHHHHHHhCCCeeeee
Confidence 99999999999999996
No 28
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=93.04 E-value=0.78 Score=49.65 Aligned_cols=173 Identities=21% Similarity=0.320 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCCCCCCcccccccccccccccccC-CCCCC
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKHND 137 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-gkhnD 137 (957)
-.+|-.+--+|..++|..++.++.+= +.|| .|-|. |+..--|. | -+++-+|+|.|.. |+.-
T Consensus 2 fQ~iI~~Lq~fW~~~GC~i~qPyD~E---------vGAG--T~hPaTflr~Lgpe-p----w~vAYVqPsrRP~DGRYG- 64 (279)
T cd00733 2 FQDLILKLQKFWASQGCLIIQPYDME---------VGAG--TFHPATFLRALGPE-P----WNVAYVEPSRRPTDGRYG- 64 (279)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcccc---------cccc--cCCHHHHHHhcCCC-c----ceeccccCCCCCCCCCcC-
Confidence 35777888899999999999877652 2344 67774 33322221 1 3689999999972 2111
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCCCCC
Q 002171 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASR 217 (957)
Q Consensus 138 l~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~~~~~~ 217 (957)
+|.-+- .||.=|..+=-=|-.+ ..+.=.+-| +.+||||.. |
T Consensus 65 -eNPNRL-q~y~QfQViiKPsP~n-----iQelYL~SL-~~lGid~~~-------------------------------h 105 (279)
T cd00733 65 -ENPNRL-QHYYQFQVIIKPSPDN-----IQELYLESL-EALGINPKE-------------------------------H 105 (279)
T ss_pred -CCchhh-hhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------------c
Confidence 222222 3444454432222221 111111112 246666653 2
Q ss_pred cccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHH
Q 002171 218 VLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297 (957)
Q Consensus 218 i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDtGmGlE 297 (957)
=+|| .+|| |+-=.-|--|-==|+-.| | +||=-.-+. .+ .-| .++..-.+.-=+|||
T Consensus 106 DIRF-VEDn-WEsPTLGAwGLGWEVWld---G--------------MEITQFTYF--QQ-vGG--i~~~pv~~EiTYGLE 161 (279)
T cd00733 106 DIRF-VEDN-WESPTLGAWGLGWEVWLD---G--------------MEVTQFTYF--QQ-VGG--IPCKPISVEITYGLE 161 (279)
T ss_pred CeeE-eecC-CCCCcccccccccEEEEC---C--------------eeeeeeeee--ee-eCC--eeccccceeeehhHH
Confidence 2344 2455 543112555655666655 1 666533222 22 223 335555677789999
Q ss_pred HHHHHHhCCCCCccc
Q 002171 298 RLTSILQNKMSNYDT 312 (957)
Q Consensus 298 Rl~~vlq~~~s~ydt 312 (957)
|||+.|||+.|+||.
T Consensus 162 RiamylQ~vd~v~dl 176 (279)
T cd00733 162 RIAMYLQGVDNVYDI 176 (279)
T ss_pred HHHHHHhCCCceecc
Confidence 999999999999996
No 29
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=92.74 E-value=0.7 Score=49.67 Aligned_cols=177 Identities=19% Similarity=0.270 Sum_probs=96.1
Q ss_pred cCCChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCCCCCCcccccccccccccccccC-C
Q 002171 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-G 133 (957)
Q Consensus 56 ~~~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-g 133 (957)
++|+-..|.-+-.+|+.++|..++-++-+= +.|| .|-|+ ||..--|. | =.++-+|+|-|.+ |
T Consensus 3 ~~~~fQ~~IltLq~yW~~qGC~i~QpyD~e---------vGAG--T~hPaTfLralGpe-P----w~aAYVqPSRRP~DG 66 (298)
T COG0752 3 KKLTFQGLILTLQNYWAEQGCTILQPYDME---------VGAG--TFHPATFLRALGPE-P----WNAAYVQPSRRPTDG 66 (298)
T ss_pred ccccHHHHHHHHHHHHHHcCCEEecccccc---------cccC--cCChHHHHHhcCCC-c----cceeeeccCCCCCCC
Confidence 468889999999999999999998766541 3444 68886 44332221 1 2568899999973 1
Q ss_pred CCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcC
Q 002171 134 KHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 213 (957)
Q Consensus 134 khnDl~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~~ 213 (957)
+.- +|.-+=-+||- |..+=-=|= +-|.--+==-.+.|||||.
T Consensus 67 RYG--enPNRlq~yyQ-fQVilKPsP------~NiQeLYL~SL~~lGid~~----------------------------- 108 (298)
T COG0752 67 RYG--ENPNRLQHYYQ-FQVIIKPSP------DNIQELYLGSLEALGIDPL----------------------------- 108 (298)
T ss_pred CCC--CCchhhhhhee-EEEEecCCC------ccHHHHHHHHHHHcCCChh-----------------------------
Confidence 111 22222222233 222100000 0000000001123444443
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccC
Q 002171 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTG 293 (957)
Q Consensus 214 ~~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDtG 293 (957)
+|=+||= +|| |+-=.-|--|--=|+..| | +||=-.-| |.+ ..| +. +..-.+.--
T Consensus 109 --~HDIRFV-EDn-WE~PTlGawGlGWEVWld---G--------------MEvTQFTY--FQQ-vGG-ie-c~pV~~EIT 162 (298)
T COG0752 109 --EHDIRFV-EDN-WENPTLGAWGLGWEVWLD---G--------------MEVTQFTY--FQQ-VGG-LE-CKPVSGEIT 162 (298)
T ss_pred --hcceeee-ccC-CCCCcccccccceeEEEc---C--------------eeeeeeeh--hhh-hCC-ee-ccceeeeee
Confidence 3445552 455 553223666666677755 1 56543222 222 323 22 333355667
Q ss_pred chHHHHHHHHhCCCCCccc
Q 002171 294 LGFERLTSILQNKMSNYDT 312 (957)
Q Consensus 294 mGlERl~~vlq~~~s~ydt 312 (957)
+||||||+.+||+.++||.
T Consensus 163 YGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 163 YGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred hhHHHHHHHHhCccceeEE
Confidence 9999999999999999996
No 30
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=92.40 E-value=0.24 Score=54.91 Aligned_cols=102 Identities=17% Similarity=0.271 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCccc-CCCC-Cccccccccccc---cccccCCCCCCC----ccccccccccccccccc
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVP-VNDP-TLLFANAGMNQY---KPIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp-~~d~-~llf~nAGm~~f---k~~flG~~~p~~----~~~~~~r~~~~QkCiR~ 131 (957)
++|-+.+-+||.++|...|..--+.+ ..++ .-.|.-. .| ++++|-+.+--+ -.+.+.|+-..-+|.|.
T Consensus 5 s~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~---~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~ 81 (269)
T cd00669 5 SKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVK---YNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFRN 81 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEee---ecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEecceeC
Confidence 57888999999999999885444432 1111 1112110 01 223332211000 00124677788899995
Q ss_pred CCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHHch
Q 002171 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLT 176 (957)
Q Consensus 132 ggkhnDl~~VG~~~rH~TfFeMlGn-~sfgdYfK~eai~~awe~lt 176 (957)
| +.|.||+.=|-||.- .+|.|| ++.++.+=+++.
T Consensus 82 -----e----~~~~~hl~EF~~le~e~~~~~~--~dvm~~~e~lv~ 116 (269)
T cd00669 82 -----E----DLRARHQPEFTMMDLEMAFADY--EDVIELTERLVR 116 (269)
T ss_pred -----C----CCCCCcccceeEEEEEEecCCH--HHHHHHHHHHHH
Confidence 4 347799999999844 366675 445555544443
No 31
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=91.59 E-value=1.1 Score=51.05 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHHhhhCCCeeecCCCccc
Q 002171 59 PATKVRDTFFKFFEDKNHVNWKSSPVVP 86 (957)
Q Consensus 59 ~~~eir~~fl~ff~~~gH~~~~s~slvp 86 (957)
...++++.-.++|.+-|.+.+....|..
T Consensus 109 Pl~~~~~~Ir~if~~mGF~ev~gpeIes 136 (339)
T PRK00488 109 PITQTIEEIEDIFVGMGFEVAEGPEIET 136 (339)
T ss_pred HHHHHHHHHHHHHHhCCCEEEeCCcccc
Confidence 3566777777777888999998777754
No 32
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=89.26 E-value=2.1 Score=50.58 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccc------cccccCCCCCCC----ccccccccccccccccc
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPNT----QLSKLTRACNTQKCIRA 131 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~f------k~~flG~~~p~~----~~~~~~r~~~~QkCiR~ 131 (957)
.|-+.+-+||.++|...|..--|++. ++ ..|-..| ++++|-+.+--+ -.+.+.|+-...+|+|.
T Consensus 138 ~i~~~iR~ff~~~gf~EV~TP~L~~~-~~-----eg~~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~ 211 (428)
T TIGR00458 138 GVLESVREFLAEEGFIEVHTPKLVAS-AT-----EGGTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRA 211 (428)
T ss_pred HHHHHHHHHHHHCCCEEEeCCceecC-CC-----CCCcceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEeccccc
Confidence 45567889999999998854445431 10 0112222 344444332100 01235788888999997
Q ss_pred CCCCCCCCCCCCCCCccccccccccc-ccccccHHHHHHHHHHHch
Q 002171 132 GGKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (957)
Q Consensus 132 ggkhnDl~~VG~~~rH~TfFeMlGn~-sfgdYfK~eai~~awe~lt 176 (957)
. +.+ |.||.+=|.||--. +|.|| ++.++.+=+++.
T Consensus 212 E-------~~~-t~rHl~EFt~lE~e~a~~~~--~dlm~~~e~li~ 247 (428)
T TIGR00458 212 E-------EHN-THRHLNEATSIDIEMAFEDH--HDVMDILEELVV 247 (428)
T ss_pred C-------CCC-CccchheeeEeeeeeccCCH--HHHHHHHHHHHH
Confidence 3 333 56999999999554 77887 566666655544
No 33
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=88.96 E-value=3.8 Score=52.84 Aligned_cols=173 Identities=21% Similarity=0.335 Sum_probs=103.7
Q ss_pred CCChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccccccccccc-cc---CCCCCCCcccccccccccccccccC
Q 002171 57 EWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FL---GTADPNTQLSKLTRACNTQKCIRAG 132 (957)
Q Consensus 57 ~~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~-fl---G~~~p~~~~~~~~r~~~~QkCiR~g 132 (957)
.|+-.++-.+--+|+.++|+.++.++.+= +.|| .|-|. |+ |.++ -+++-+|+|.|..
T Consensus 4 ~~~~q~~i~~l~~~w~~~gc~~~qp~~~e---------~gag--t~~p~t~~~~l~~~~--------~~~ayv~p~~rp~ 64 (1000)
T PRK14908 4 PLTMQDMLLALLRYWSEQGCIIHQGYDLE---------VGAG--TFNPATFLRVLGPEP--------WRVAYVEPSRRPD 64 (1000)
T ss_pred cccHHHHHHHHHHHHHHCCCEEECCcccc---------cccC--cCCHHHHHhhcCCCC--------CcccccCCCCCCC
Confidence 47899999999999999999999877652 3344 67774 33 5443 3679999999972
Q ss_pred -CCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHh
Q 002171 133 -GKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 211 (957)
Q Consensus 133 -gkhnDl~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~ 211 (957)
|+.- +|.-+ -.||+=|..+=-=|-++ ..+.=.+-| +.+|||+..=
T Consensus 65 d~ryg--~npnr-l~~~~q~qvi~kp~p~~-----~q~~yl~sl-~~~gi~~~~~------------------------- 110 (1000)
T PRK14908 65 DGRYG--QNPNR-LQTYTQFQVILKPVPGN-----PQELYLESL-KAIGIDLRDH------------------------- 110 (1000)
T ss_pred CCCcC--CCchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHcCCCcccc-------------------------
Confidence 1111 33333 34555566543333332 111111111 2467776542
Q ss_pred cCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccc
Q 002171 212 FLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVD 291 (957)
Q Consensus 212 ~~~~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iD 291 (957)
=+|| .+|| |+-=.-|--|===|+-.| | +||=-.-|.| ..-| .++..-.+.
T Consensus 111 ------dirf-ved~-we~p~lga~glgwevw~~---g--------------meitqftyfq---q~gg--~~~~~~~~e 160 (1000)
T PRK14908 111 ------DIRF-VHDD-WENPTIGAWGLGWEVWLD---G--------------MEITQFTYFQ---QAGG--KPLDPISGE 160 (1000)
T ss_pred ------ceeE-eecC-CCCCcccccccccEEEEC---C--------------eeeeeeeeeh---hcCC--eecccccee
Confidence 2333 2455 432112555655666655 1 6665333222 2333 345555777
Q ss_pred cCchHHHHHHHHhCCCCCccc
Q 002171 292 TGLGFERLTSILQNKMSNYDT 312 (957)
Q Consensus 292 tGmGlERl~~vlq~~~s~ydt 312 (957)
-=+|||||++.|||+.+.||.
T Consensus 161 itygler~~m~~q~~~~~~~~ 181 (1000)
T PRK14908 161 ITYGIERIAMYLQKVNHFKDI 181 (1000)
T ss_pred eeccHHHHHHHHhCCCeeeee
Confidence 889999999999999999986
No 34
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=88.83 E-value=2.4 Score=48.25 Aligned_cols=101 Identities=23% Similarity=0.373 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccc------cccccCCCCCC---Ccccccccccccccccc
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPN---TQLSKLTRACNTQKCIR 130 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~f------k~~flG~~~p~---~~~~~~~r~~~~QkCiR 130 (957)
-+.|.+.+-+||.++|...|..-.+.+. +. .+|..+| +|++|-+.+-- --+..+.|+-...+|+|
T Consensus 27 rs~i~~~ir~~f~~~gf~eV~TP~l~~~-~~-----e~~~~~f~~~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR 100 (322)
T cd00776 27 RSEVLRAFREFLRENGFTEVHTPKITST-DT-----EGGAELFKVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFR 100 (322)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceecC-CC-----CccCCccccccCCCcceecCCHHHHHHHHHHhhhhhEEeccccc
Confidence 4578899999999999999876556542 11 1344445 44555443210 00111578888899999
Q ss_pred cCCCCCCCCCCCCCCCccccccccccc-ccc-cccHHHHHHHHHHHch
Q 002171 131 AGGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DYFKNEAIEWAWELLT 176 (957)
Q Consensus 131 ~ggkhnDl~~VG~~~rH~TfFeMlGn~-sfg-dYfK~eai~~awe~lt 176 (957)
.. =+.+.||+.=|.||.-. +|. || ++.++.+=++|.
T Consensus 101 ~E--------~~~~~rHl~EFtmlE~e~~~~~~~--~dlm~~~e~ll~ 138 (322)
T cd00776 101 AE--------KSNTRRHLSEFWMLEAEMAFIEDY--NEVMDLIEELIK 138 (322)
T ss_pred cC--------CCCcCCCcceeeccceeeeccCCH--HHHHHHHHHHHH
Confidence 63 12356999999999655 444 44 345555444443
No 35
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=88.54 E-value=4.3 Score=48.37 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccC-CCCCc-cccc-ccc-----ccc-cccccCCCCC---CCcccccccccccccc
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPV-NDPTL-LFAN-AGM-----NQY-KPIFLGTADP---NTQLSKLTRACNTQKC 128 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~-~d~~l-lf~n-AGm-----~~f-k~~flG~~~p---~~~~~~~~r~~~~QkC 128 (957)
++|-+.+-+||.++|...|..--+.+. .++.. +|.- +-+ +.| ++++|-+.+- .--.+.+.|+-..-+|
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~ 216 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPT 216 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeec
Confidence 466778889999999998855444331 11110 1211 100 111 3444433221 0001135788888999
Q ss_pred cccCCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHHc
Q 002171 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELL 175 (957)
Q Consensus 129 iR~ggkhnDl~~VG~~~rH~TfFeMlGn-~sfgdYfK~eai~~awe~l 175 (957)
+|.. + ..|.||+.=|.||-- .+|.|| +|.+..+=+++
T Consensus 217 FR~E-------~-~~t~rHl~EFt~lE~e~~~~~~--~~~m~~~e~li 254 (450)
T PRK03932 217 FRAE-------N-SNTRRHLAEFWMIEPEMAFADL--EDNMDLAEEML 254 (450)
T ss_pred cccC-------C-CCCccccccccccceEEeccCH--HHHHHHHHHHH
Confidence 9963 2 236799999999865 377776 45555444443
No 36
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=83.70 E-value=7 Score=44.14 Aligned_cols=114 Identities=17% Similarity=0.266 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccc-----------cccccCCCCCC----Cccccccccccc
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY-----------KPIFLGTADPN----TQLSKLTRACNT 125 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~f-----------k~~flG~~~p~----~~~~~~~r~~~~ 125 (957)
+.|-+.+-+||.++|...|..--+.+.. -+.+|..+| ++.+|-+.+-- --.+.+.|+-..
T Consensus 5 s~i~~~ir~~f~~~gF~EV~TP~l~~~~-----~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfei 79 (304)
T TIGR00462 5 ARLLAAIRAFFAERGVLEVETPLLSPAP-----VTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQI 79 (304)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecCC-----CCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEE
Confidence 4678889999999999988655555421 111233333 34445443210 001235788888
Q ss_pred ccccccCCCCCCCCCCCCCCCccccccccccc-ccccccHHHHHHHHHHHchhccC-CCCCceEEEE
Q 002171 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLTKVYR-LPADRLYATY 190 (957)
Q Consensus 126 QkCiR~ggkhnDl~~VG~~~rH~TfFeMlGn~-sfgdYfK~eai~~awe~lt~~l~-l~~~rl~vT~ 190 (957)
-+|.|.. ++ +.||.+=|.||--. +|.|| ++.++..=+++..++. +.+.--.+||
T Consensus 80 gp~FRaE-------~~--~~rHl~EFtmLE~e~~~~d~--~d~m~~~e~li~~i~~~~~~~~~~it~ 135 (304)
T TIGR00462 80 CKVFRNG-------ER--GRRHNPEFTMLEWYRPGFDY--HDLMDEVEALLQELLGDPFAPWERLSY 135 (304)
T ss_pred cCceeCC-------CC--CCCcccHHHhHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCcEEEEH
Confidence 9999974 23 36999999998443 55565 4677776666665543 2222223576
No 37
>PLN02603 asparaginyl-tRNA synthetase
Probab=83.52 E-value=12 Score=45.84 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=25.0
Q ss_pred CCccccCchHHHHHHHHhCCCCCccccccH
Q 002171 287 AKHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (957)
Q Consensus 287 ~k~iDtGmGlERl~~vlq~~~s~ydtdlf~ 316 (957)
.+|---|||+|||++.+-|..|.=|+-+|.
T Consensus 528 pPhgGfGlG~ERLvm~ltg~~nIRdvi~FP 557 (565)
T PLN02603 528 VPHAGFGLGFERLVQFATGIDNIRDAIPFP 557 (565)
T ss_pred CCCceeEEcHHHHHHHHhCCCchhheeecc
Confidence 357788999999999999999988875553
No 38
>PRK06462 asparagine synthetase A; Reviewed
Probab=82.97 E-value=5.2 Score=45.81 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccc--ccccc------cccccCCCCCC---Ccccccccccccccc
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANA--GMNQY------KPIFLGTADPN---TQLSKLTRACNTQKC 128 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nA--Gm~~f------k~~flG~~~p~---~~~~~~~r~~~~QkC 128 (957)
-++|-+.+-+||.++|...|..==+.+..++-+- ..| |...| ++++|-+.+-- --.+.+.|+-...+|
T Consensus 33 Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~-~g~~~~~~~~~~~~~~~~~yL~~Spql~k~ll~~g~~rVfeI~p~ 111 (335)
T PRK06462 33 QSSILRYTREFLDGRGFVEVLPPIISPSTDPLMG-LGSDLPVKQISIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPN 111 (335)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCC-ccccCCccccccccCCCceeeccCHHHHHHHHHhhcCcEEEEecc
Confidence 4567888999999999887743333332222110 000 01111 22333222100 000125678888999
Q ss_pred cccCCCCCCCCCCCC-CCCccccccccccc-ccccccHHHHHHHHHHHc
Q 002171 129 IRAGGKHNDLDDVGK-DTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELL 175 (957)
Q Consensus 129 iR~ggkhnDl~~VG~-~~rH~TfFeMlGn~-sfgdYfK~eai~~awe~l 175 (957)
.|.. .++. +.||..=|.||--. .|.|| ++.++.+=+++
T Consensus 112 FR~E-------~~~~~~~rHl~EFtmlE~e~~~~d~--~dlm~~~e~lv 151 (335)
T PRK06462 112 FRLE-------PVDKDTGRHLYEFTQLDIEIEGADL--DEVMDLIEDLI 151 (335)
T ss_pred ccCC-------CCCCCCCCCCCchheeeehhhcCCH--HHHHHHHHHHH
Confidence 9973 3442 26999999998554 55564 34444444443
No 39
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=82.45 E-value=5.1 Score=43.89 Aligned_cols=172 Identities=23% Similarity=0.344 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCCCCCCcccccccccccccccccC-CCCCCC
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-GKHNDL 138 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-gkhnDl 138 (957)
.+|-.+--+|..++|..++.++.+= +.|| .|-|. |++.--|. | -+++-+|+|.|.. |+.-
T Consensus 2 Q~iI~~Lq~fW~~~GC~i~qPyD~e---------vGAG--T~~P~Tflr~Lgpe-p----w~vaYVqPsrRP~DGRYG-- 63 (284)
T PF02091_consen 2 QDIILTLQKFWADQGCIILQPYDIE---------VGAG--TFHPATFLRALGPE-P----WNVAYVQPSRRPTDGRYG-- 63 (284)
T ss_dssp HHHHHHHHHHHHCTT-EE----SS-----------SSG--GGSHHHHTTTSSSS------EEEEEEEEEE-GGG--TT--
T ss_pred HHHHHHHHHHHHHCCCEEECCcccc---------cccc--cCCHHHHHHhcCCC-C----ccccccccCCCCCCCccC--
Confidence 4567778899999999999877652 3444 67774 44333332 1 4789999999972 2111
Q ss_pred CCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCCCCCc
Q 002171 139 DDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRV 218 (957)
Q Consensus 139 ~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~~~~~~i 218 (957)
+|.-+=- ||.=|..+=-=|-++ ..+.=.+-| +.+|||+.. |=
T Consensus 64 eNPNRLq-~y~QfQVilKPsP~n-----iq~lYL~SL-~~lGId~~~-------------------------------hD 105 (284)
T PF02091_consen 64 ENPNRLQ-HYYQFQVILKPSPDN-----IQELYLESL-EALGIDPKE-------------------------------HD 105 (284)
T ss_dssp TSSS--S-EEEEEEEEEES--TT-----HHHHHHHHH-HHCT--CCC-------------------------------S-
T ss_pred CCchHhh-hhheeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc-------------------------------cc
Confidence 3444433 444344432222221 111111112 246776654 22
Q ss_pred ccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHHH
Q 002171 219 LPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFER 298 (957)
Q Consensus 219 ~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDtGmGlER 298 (957)
+|| .+|| |+-=.-|--|-==|+--| | +||=-.-+.| + .-| .++..-.+.-=+||||
T Consensus 106 IRF-VEDn-WEsPtLGAwGlGWEVWld---G--------------MEITQfTYFQ--Q-vGG--i~~~pv~~EITYGLER 161 (284)
T PF02091_consen 106 IRF-VEDN-WESPTLGAWGLGWEVWLD---G--------------MEITQFTYFQ--Q-VGG--IDCKPVSVEITYGLER 161 (284)
T ss_dssp EEE-EEE--EEETTTTEEEEEEEEEET---T--------------CEEEEEEEEE--E-ETT--EE-SS--EEEEEEHHH
T ss_pred eeE-eecC-CCCCcccccccccEEEEC---C--------------EEEEEeeeee--e-eCC--ccccccceehhhhHHH
Confidence 333 2455 442112555545566654 1 6665433332 2 223 3455567788899999
Q ss_pred HHHHHhCCCCCccc
Q 002171 299 LTSILQNKMSNYDT 312 (957)
Q Consensus 299 l~~vlq~~~s~ydt 312 (957)
||+.|||+.++||.
T Consensus 162 iamylQ~vdnv~dl 175 (284)
T PF02091_consen 162 IAMYLQGVDNVYDL 175 (284)
T ss_dssp HHHHHCT-SSGGGS
T ss_pred HHHHHhCCCeeEee
Confidence 99999999999997
No 40
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=79.68 E-value=11 Score=40.24 Aligned_cols=108 Identities=20% Similarity=0.229 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccc--------ccccc----------------------ccccCCC
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG--------MNQYK----------------------PIFLGTA 110 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAG--------m~~fk----------------------~~flG~~ 110 (957)
..|.+.+.+.|++.|+..|..-.+.|.. +|...| |..|. .++....
T Consensus 6 ~~l~~~~~~~~~~~G~~ei~~P~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 6 RALERFLDDRMAEYGYQEILFPFLAPTV----LFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEcCHH----HHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 4688889999999999888776666621 121121 22221 1122211
Q ss_pred CCCCcccccccccccccccccCCCCCCCCCC-CCCCCccccccccccccccc-----ccHHHHHHHHHHHchhccCCC
Q 002171 111 DPNTQLSKLTRACNTQKCIRAGGKHNDLDDV-GKDTYHHTFFEMLGNWSFGD-----YFKNEAIEWAWELLTKVYRLP 182 (957)
Q Consensus 111 ~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~V-G~~~rH~TfFeMlGn~sfgd-----YfK~eai~~awe~lt~~l~l~ 182 (957)
.+..++ .-|++-..+|.|. ....- |. .|-+- |.|.|-..||+ ..-.|.+..++++|. .||++
T Consensus 82 ~~~~~l--P~r~~~~g~~fR~-----E~~~~~gl-~R~re-F~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~-~lgl~ 149 (235)
T cd00670 82 LSYRAL--PLRLDQIGPCFRH-----EPSGRRGL-MRVRE-FRQVEYVVFGEPEEAEEERREWLELAEEIAR-ELGLP 149 (235)
T ss_pred ccchhc--CeeeeeecccccC-----CCCCCCCC-hhhee-eeeceEEEEcCHHHHHHHHHHHHHHHHHHHH-HcCCc
Confidence 110011 2478889999995 44332 22 24333 89999999984 345688999999996 46885
No 41
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=77.91 E-value=0.42 Score=58.19 Aligned_cols=80 Identities=25% Similarity=0.191 Sum_probs=60.5
Q ss_pred CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecc---cccccCCCCccccCCCCc
Q 002171 213 LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVF---IQFNRESDGSLKPLPAKH 289 (957)
Q Consensus 213 ~~~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVF---mq~~r~~~g~l~~L~~k~ 289 (957)
+|++||+-. ...|. |.||+|=|.++ |+ .|.-+++| |+|....++ ....|..-
T Consensus 116 i~~~~l~vt---~~~~d----~ea~~~w~~~~---g~--------------~~~~i~~~~~~~nfw~~g~~-gpcgpcse 170 (552)
T PF01411_consen 116 IPPDRLYVT---VFEWD----GEAGEIWEKIV---GG--------------PEERILVFGKKDNFWEMGDT-GPCGPCSE 170 (552)
T ss_dssp --GGGEEEE---EECCE----CCCCCCCCECC---TT--------------ECCCEEEE-CCEEEEESSTS-EEEEEEEE
T ss_pred CChHhEEEE---EeCCc----hhHHHHHHHhc---CC--------------CHHHeEecCCCCceEECCCC-CCCCCCEE
Confidence 898888752 33332 48999998873 22 67778899 999976664 57899999
Q ss_pred cccCchHHHHHHHHhCCCCCccccccHHH
Q 002171 290 VDTGLGFERLTSILQNKMSNYDTDVFMPI 318 (957)
Q Consensus 290 iDtGmGlERl~~vlq~~~s~ydtdlf~pl 318 (957)
||+|+|+||..|..++.++.|+. .|..|
T Consensus 171 I~~d~G~e~~~~~~~~~~~~~~~-~~~ei 198 (552)
T PF01411_consen 171 IFYDRGEERGCWDSQGTPTCDDD-RFLEI 198 (552)
T ss_dssp EEEEEECCCHHHHHHSTSSHHHH-HECCC
T ss_pred EEECCCcccCccccccccccccc-cHHHH
Confidence 99999999999999999997775 44443
No 42
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=77.34 E-value=12 Score=44.36 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhhCCCeeecCCCcccCC-CCCc-cccccccccc-cccccCCCCCC----CcccccccccccccccccCCC
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVPVN-DPTL-LFANAGMNQY-KPIFLGTADPN----TQLSKLTRACNTQKCIRAGGK 134 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp~~-d~~l-lf~nAGm~~f-k~~flG~~~p~----~~~~~~~r~~~~QkCiR~ggk 134 (957)
.|-+.+-+||.++|...|..--|+... +.-. .|.- +.| ++++|-+.+-- --.+.+.|+-..-+|+|..
T Consensus 141 ~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~~---~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E-- 215 (437)
T PRK05159 141 EVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPI---DYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAE-- 215 (437)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccCCCCCcceEeE---EecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCC--
Confidence 455678899999999888644443211 1100 1110 001 44555333210 0001256778888999973
Q ss_pred CCCCCCCCCCCCccccccccccc-cccc-c
Q 002171 135 HNDLDDVGKDTYHHTFFEMLGNW-SFGD-Y 162 (957)
Q Consensus 135 hnDl~~VG~~~rH~TfFeMlGn~-sfgd-Y 162 (957)
+.+ |.||..=|.||--. +|.| |
T Consensus 216 -----~~~-t~rHl~EFt~lE~e~a~~~~~ 239 (437)
T PRK05159 216 -----EHN-TSRHLNEYTSIDVEMGFIDDH 239 (437)
T ss_pred -----CCC-CcccchhhheeeeeeeecccH
Confidence 233 56999999999655 6766 5
No 43
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=76.27 E-value=16 Score=43.98 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHhhhCCCeeecCCCc
Q 002171 58 WPATKVRDTFFKFFEDKNHVNWKSSPV 84 (957)
Q Consensus 58 ~~~~eir~~fl~ff~~~gH~~~~s~sl 84 (957)
=...++|+.+.++|.+-|.+.++..|.
T Consensus 221 HPl~~~~~ei~~if~~mGF~e~~~g~~ 247 (492)
T PLN02853 221 HPLLKVRQQFRKIFLQMGFEEMPTNNF 247 (492)
T ss_pred CHHHHHHHHHHHHHHhCCCEEecCCCC
Confidence 347889999999999999999964443
No 44
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=76.22 E-value=3 Score=50.25 Aligned_cols=100 Identities=16% Similarity=0.320 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccc--------cccccCCCCCCC----cccccccccccccc
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY--------KPIFLGTADPNT----QLSKLTRACNTQKC 128 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~f--------k~~flG~~~p~~----~~~~~~r~~~~QkC 128 (957)
+.|-+.+-+||.++|...|..--|.+.. ..|..-+| ++.||-.++--+ -.+.+.|+-..-+|
T Consensus 176 s~i~~~iR~fl~~~gF~EVeTP~L~~~~------gga~a~pF~t~~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~ 249 (496)
T TIGR00499 176 SKIIKAIRRFLDDRGFIEVETPMLQVIP------GGANARPFITHHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRN 249 (496)
T ss_pred HHHHHHHHHHHHHCcCEEEeCCeeecCC------CCccceeEEeecccCCCceEEecCHHHHHHHHHhCCCCceEEEecc
Confidence 3566778899999999988544443321 11222223 334454432100 01235677888899
Q ss_pred cccCCCCCCCCCCCCCCCcccccccccc-cccccc-----cHHHHHHHHHHHc
Q 002171 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDY-----FKNEAIEWAWELL 175 (957)
Q Consensus 129 iR~ggkhnDl~~VG~~~rH~TfFeMlGn-~sfgdY-----fK~eai~~awe~l 175 (957)
+|.. ++ +.||..=|.||-- ++|.|| +=++.|..++.-+
T Consensus 250 FRnE-------~~--~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l 293 (496)
T TIGR00499 250 FRNE-------GV--DTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQEL 293 (496)
T ss_pred eecC-------CC--CCcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9963 33 4599999999966 477787 2344455554444
No 45
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=72.83 E-value=7.5 Score=44.44 Aligned_cols=173 Identities=21% Similarity=0.256 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCCcc-----------c-----CCCCCccccccccccccccccCC------------CC
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSPVV-----------P-----VNDPTLLFANAGMNQYKPIFLGT------------AD 111 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~slv-----------p-----~~d~~llf~nAGm~~fk~~flG~------------~~ 111 (957)
..++++...++|.+-|.+.+...-+- | |+-.+.+|.+..-. | ..|-+ ..
T Consensus 113 l~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~--~-~lLRTHTs~vq~R~l~~~~ 189 (335)
T COG0016 113 LTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDRE--K-LLLRTHTSPVQARTLAENA 189 (335)
T ss_pred HHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCCCC--c-eeecccCcHhhHHHHHhCC
Confidence 66788888889999999887754332 1 23334444444221 0 12211 11
Q ss_pred CCCcccccccccccccccccCCCCCCCCCCCCCCCcccccc-cc-----cccccccccHHHHHHHHHHHchhccCCC-CC
Q 002171 112 PNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFE-ML-----GNWSFGDYFKNEAIEWAWELLTKVYRLP-AD 184 (957)
Q Consensus 112 p~~~~~~~~r~~~~QkCiR~ggkhnDl~~VG~~~rH~TfFe-Ml-----Gn~sfgdYfK~eai~~awe~lt~~l~l~-~~ 184 (957)
| .| -|+.++.+|.| ||-. |+.|.-.|. += -|.||.| -.-.--+|+.+-+|.+ +=
T Consensus 190 ~-~P----~k~~~~grvyR-----~D~~----DaTHs~~FhQiEGlvvd~~~s~~~-----Lkg~L~~f~~~~fg~~~~v 250 (335)
T COG0016 190 K-IP----IKIFSPGRVYR-----NDTV----DATHSPEFHQIEGLVVDKNISFAD-----LKGTLEEFAKKFFGEDVKV 250 (335)
T ss_pred C-CC----ceEecccceec-----CCCC----CcccchheeeeEEEEEeCCccHHH-----HHHHHHHHHHHhcCCCcce
Confidence 1 12 58899999999 5744 456655543 32 4666654 2223335555555566 44
Q ss_pred ceEEEEECCCCcCCCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCee
Q 002171 185 RLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCI 264 (957)
Q Consensus 185 rl~vT~~~~~~~~~~~~D~e~~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~l 264 (957)
|.--+||. | | =|+-|++....+ |..||
T Consensus 251 RfrpsyFP-----------------------------------F----T---EPS~Evdv~~~~-----------~~~Wl 277 (335)
T COG0016 251 RFRPSYFP-----------------------------------F----T---EPSAEVDVYCPG-----------CGGWL 277 (335)
T ss_pred EeecCCCC-----------------------------------C----C---CCeEEEEEEEcC-----------CCCEE
Confidence 55555653 1 2 357787754321 14588
Q ss_pred EEeeecccccccC-CCCccccCCCCccccCchHHHHHHHHhCCCC
Q 002171 265 EIWNIVFIQFNRE-SDGSLKPLPAKHVDTGLGFERLTSILQNKMS 308 (957)
Q Consensus 265 EiwNlVFmq~~r~-~~g~l~~L~~k~iDtGmGlERl~~vlq~~~s 308 (957)
||.+.=-..=|=. .-| +.|-+-...=-|||+||||++.-|.+.
T Consensus 278 Ei~G~Gmv~P~VL~~~G-~~~~~~~GfAfGlGlERlAMLkygI~D 321 (335)
T COG0016 278 EILGCGMVHPNVLEAVG-IDPEEYSGFAFGLGLERLAMLKYGIPD 321 (335)
T ss_pred EEecccccCHHHHHhcC-CCCCcceEEEEeecHHHHHHHHhCCcH
Confidence 8885411111100 001 111111222569999999999988654
No 46
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=71.89 E-value=4.2 Score=39.34 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.2
Q ss_pred HHHHHHchhccCCCCCceEEEEE
Q 002171 169 EWAWELLTKVYRLPADRLYATYF 191 (957)
Q Consensus 169 ~~awe~lt~~l~l~~~rl~vT~~ 191 (957)
.-.-++|++.||||++|+|+.|+
T Consensus 79 ~~i~~~l~~~LgIp~dRiYI~f~ 101 (113)
T PTZ00450 79 PRITAAITKECGIPAERIYVFYY 101 (113)
T ss_pred HHHHHHHHHHcCCCcccEEEEEE
Confidence 44568899999999999999997
No 47
>PLN02502 lysyl-tRNA synthetase
Probab=69.78 E-value=13 Score=45.48 Aligned_cols=86 Identities=15% Similarity=0.285 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccccccccc--------ccccCCCCCCC----ccccccccccccccc
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK--------PIFLGTADPNT----QLSKLTRACNTQKCI 129 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk--------~~flG~~~p~~----~~~~~~r~~~~QkCi 129 (957)
.|-+.+-+||.++|...|..=-+.+. . .+|+--+|+ +.||-+.+--+ -.+.+.|+-..-+|+
T Consensus 234 ~i~~~iR~fl~~~gF~EVeTPiL~~~-~-----gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~F 307 (553)
T PLN02502 234 KIISYIRRFLDDRGFLEVETPMLNMI-A-----GGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQF 307 (553)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeecc-C-----CCccccceeeecccCCcceeeecCHHHHHHHHHHhccCCEEEEcCee
Confidence 45577889999999988844333221 1 123333332 23343322100 002356778888999
Q ss_pred ccCCCCCCCCCCCCCCCcccccccccc-cccccc
Q 002171 130 RAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDY 162 (957)
Q Consensus 130 R~ggkhnDl~~VG~~~rH~TfFeMlGn-~sfgdY 162 (957)
|.. .++ .||..=|.||-- ++|.||
T Consensus 308 RnE-------~~~--~rH~pEFtmlE~y~a~~d~ 332 (553)
T PLN02502 308 RNE-------GIS--TRHNPEFTTCEFYQAYADY 332 (553)
T ss_pred eCC-------CCC--CccccceeehhhhhhcCCH
Confidence 963 343 499999999976 588887
No 48
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=69.53 E-value=10 Score=45.52 Aligned_cols=122 Identities=19% Similarity=0.234 Sum_probs=73.2
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCcccccccccccccc-cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCC
Q 002171 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAG 198 (957)
Q Consensus 120 ~r~~~~QkCiR~ggkhnDl~~VG~~~rH~TfFeMlGn~sfg-dYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~ 198 (957)
-|+.+..+|.| ||=. |..|+-.|.=++-+-+| +.=-.+-+..+-+|+.. +|+..=|..-+||.
T Consensus 358 ~k~fsigrVfR-----~d~~----DatH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~-lG~~~~RfrP~yfP------ 421 (494)
T PTZ00326 358 KKYFSIDRVFR-----NETL----DATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRR-IGITKLRFKPAFNP------ 421 (494)
T ss_pred ceEEecCCEec-----CCCC----CCCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHh-cCCCceEEecCCCC------
Confidence 47788889999 4633 34455444433333332 12224678888888865 58855556556653
Q ss_pred CCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeeccccccc-C
Q 002171 199 LAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNR-E 277 (957)
Q Consensus 199 ~~~D~e~~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r-~ 277 (957)
| | =|+.||+..+.+ +.+||||.|.=..+=+- .
T Consensus 422 ----------------------f-----------T---EPS~Ev~v~~~~-----------~gkWIEIgg~Gm~rpevL~ 454 (494)
T PTZ00326 422 ----------------------Y-----------T---EPSMEIFGYHPG-----------LKKWVEVGNSGIFRPEMLR 454 (494)
T ss_pred ----------------------C-----------C---CCeeEEEEEecC-----------CCcEEEEeCcCccCHHHHH
Confidence 1 2 357888855321 23599999875444111 1
Q ss_pred CCCccccCCCC--ccccCchHHHHHHHHhCCCC
Q 002171 278 SDGSLKPLPAK--HVDTGLGFERLTSILQNKMS 308 (957)
Q Consensus 278 ~~g~l~~L~~k--~iDtGmGlERl~~vlq~~~s 308 (957)
+-| +|.+ .+==||||||+||+.-|.++
T Consensus 455 ~~G----i~~~~~~~A~GlGleRlaMi~ygi~D 483 (494)
T PTZ00326 455 PMG----FPEDVTVIAWGLSLERPTMIKYGIKN 483 (494)
T ss_pred hcC----CCCcceEEEEEecHHHHHHHHhCCcH
Confidence 123 2333 56779999999999988543
No 49
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=63.67 E-value=4.9 Score=46.97 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=54.8
Q ss_pred ccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhh----hhhhhhh---eeee
Q 002171 289 HVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVV----ADHIRTL---SFAI 361 (957)
Q Consensus 289 ~iDtGmGlERl~~vlq~~~s~ydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~d~a~r~i----aDH~R~~---~~~i 361 (957)
.|+||-||=-+-++-.|..+.|-..+|.|+.+..+++....+.+.++..-. +.++-..++ ||-+-+- +=+|
T Consensus 72 digtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vIn--krStev~vg~~~RadI~v~e~fdtEli 149 (636)
T KOG1501|consen 72 DIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVIN--KRSTEVKVGGSSRADIAVREDFDTELI 149 (636)
T ss_pred EccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeec--cccceeeecCcchhhhhhHhhhhhhhh
Confidence 588999999999999999999999999999999999876555554432210 001111222 3333222 3378
Q ss_pred cCCCccCCC
Q 002171 362 ADGSCPGNE 370 (957)
Q Consensus 362 ~dG~~Psn~ 370 (957)
.+|++||=+
T Consensus 150 geGalps~q 158 (636)
T KOG1501|consen 150 GEGALPSLQ 158 (636)
T ss_pred ccccchhHH
Confidence 899999843
No 50
>KOG1759 consensus Macrophage migration inhibitory factor [Defense mechanisms]
Probab=61.85 E-value=8.3 Score=37.30 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred HHHHHchhccCCCCCceEEEEEC
Q 002171 170 WAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 170 ~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
---|+|.+.|+||++|+|++||.
T Consensus 79 ~l~~il~~~L~l~~~rv~I~f~d 101 (115)
T KOG1759|consen 79 ALTEILEKELSLDPDRVYIKFYD 101 (115)
T ss_pred HHHHHHHHHhCCCCCeEEEEEec
Confidence 34589999999999999999984
No 51
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=60.56 E-value=14 Score=44.13 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=15.9
Q ss_pred ccccCchHHHHHHHHhCCC
Q 002171 289 HVDTGLGFERLTSILQNKM 307 (957)
Q Consensus 289 ~iDtGmGlERl~~vlq~~~ 307 (957)
++=-|||+||||++.-|.+
T Consensus 317 V~AFGIGVERlAMi~ygi~ 335 (533)
T TIGR00470 317 VMNLGLGVERLAMILYGYE 335 (533)
T ss_pred eEEEEecHHHHHHHHhCCc
Confidence 4667999999999998843
No 52
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=59.05 E-value=12 Score=45.68 Aligned_cols=99 Identities=18% Similarity=0.315 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccc------cccccCCCCCC----Cccccccccccccccccc
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPN----TQLSKLTRACNTQKCIRA 131 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~f------k~~flG~~~p~----~~~~~~~r~~~~QkCiR~ 131 (957)
.|-+.|-+||.++|..-|..-.|+... +..|-..| ++++|-+.+-- .-.+.+.|+-...+|+|.
T Consensus 218 ~i~~~~R~fl~~~gFiEV~TP~L~~~~------~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRa 291 (550)
T PTZ00401 218 RVCQYFRQFLIDSDFCEIHSPKIINAP------SEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRS 291 (550)
T ss_pred HHHHHHHHHHHHCCCEEEeCCccccCC------CCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeC
Confidence 566788999999999988654444311 11223333 44455443210 000236788888999997
Q ss_pred CCCCCCCCCCCCCCCcccccccccc-cccc-cccHHHHHHHHHHHch
Q 002171 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELLT 176 (957)
Q Consensus 132 ggkhnDl~~VG~~~rH~TfFeMlGn-~sfg-dYfK~eai~~awe~lt 176 (957)
|+.+ |.||++=|.||-- ++|+ +|. |.++.+=+++.
T Consensus 292 -------E~s~-T~RHl~EFt~Le~E~~~~~~y~--evm~~~e~l~~ 328 (550)
T PTZ00401 292 -------ENSN-THRHLTEFVGLDVEMRINEHYY--EVLDLAESLFN 328 (550)
T ss_pred -------CCCC-CCCCccchhhhhhhhHhcCCHH--HHHHHHHHHHH
Confidence 3443 7799999999977 7886 553 45544444443
No 53
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=58.48 E-value=33 Score=40.55 Aligned_cols=198 Identities=20% Similarity=0.265 Sum_probs=114.0
Q ss_pred EecccchhhhhcccccccccccCCCCCcCCChHHHHHHHHHHhhhCCCeeecCCCcccCCC---------C---Cccccc
Q 002171 29 VTNHHHSLISRFSASAVAAMPGADPQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVND---------P---TLLFAN 96 (957)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d---------~---~llf~n 96 (957)
+...-+.|++| .-+...++....+ .-...+|.+...+||...|...|-...|++... . ..+|..
T Consensus 179 ~~~~e~~l~~r-r~~~~~~~~~~g~---~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i 254 (417)
T PRK09537 179 FKELESELVSR-RKNDLKQMYEEDR---EDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV 254 (417)
T ss_pred hhhHHHHHHHh-cchhhHHhhccCC---CCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee
Confidence 45556677777 4444444433222 233688999999999999999999999975321 0 001111
Q ss_pred ccccccccccc-CC--------CCCCCcccccccccccccccccCCCCCCCCCCCCCCCccccccccccccccc-ccHHH
Q 002171 97 AGMNQYKPIFL-GT--------ADPNTQLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-YFKNE 166 (957)
Q Consensus 97 AGm~~fk~~fl-G~--------~~p~~~~~~~~r~~~~QkCiR~ggkhnDl~~VG~~~rH~TfFeMlGn~sfgd-YfK~e 166 (957)
-.-..++|..+ +. ..-+.| .|+....+|.|. | ..| ..|..=|+|+|--.+|+ ..-.|
T Consensus 255 deel~LRpsLtPsLlr~la~n~k~~~~P----~RIFEIG~VFR~-----E--~~g--~~hlrEf~Ql~~~iiGs~~~f~d 321 (417)
T PRK09537 255 DKNFCLRPMLAPGLYNYLRKLDRILPDP----IKIFEIGPCYRK-----E--SDG--KEHLEEFTMVNFCQMGSGCTREN 321 (417)
T ss_pred CCceEehhhhHHHHHHHHHhhhhcccCC----eeEEEEeceEec-----C--CCC--CCCcceEEEEEEEEeCCchHHHH
Confidence 11111121111 10 000111 377888899995 4 233 45777888888777775 22356
Q ss_pred HHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeec
Q 002171 167 AIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDR 246 (957)
Q Consensus 167 ai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~ 246 (957)
+...+-++|. .|||+ | ++-. ++ + +. . |+|.+|.++
T Consensus 322 L~~lleeLL~-~LGI~----f-~i~s--------------------------------~~-~-fi-~---GR~adI~~g- 356 (417)
T PRK09537 322 LENIIDDFLK-HLGID----Y-EIIG--------------------------------DN-C-MV-Y---GDTIDIMHG- 356 (417)
T ss_pred HHHHHHHHHH-HCCCC----c-EEec--------------------------------CC-c-ce-e---cCeEEEEeC-
Confidence 8888878776 58986 2 3211 01 0 11 1 567788843
Q ss_pred CCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHHHHHHHHhCCC
Q 002171 247 TGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKM 307 (957)
Q Consensus 247 ~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDtGmGlERl~~vlq~~~ 307 (957)
+ .||++-+|=+-+-.. -..++.+++=-|+|||||+++..|..
T Consensus 357 --~--------------~el~~G~fGEi~VLe---~fGI~~PVva~EIdLerL~~~~~g~~ 398 (417)
T PRK09537 357 --D--------------LELSSAVVGPIPLDR---EWGIDKPWIGAGFGLERLLKVKHGYK 398 (417)
T ss_pred --C--------------EEEeeEEEEEEehhh---hcCCCCceEEEEEeHHHHHHHHhCcH
Confidence 1 455544554442111 12267778999999999999999943
No 54
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=58.18 E-value=10 Score=36.41 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-.+---++|.+.||+||+|+||.+++
T Consensus 74 k~~l~~~i~~~l~~~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 74 NSSIAAAITKILASHLKVKSERVYIEFKD 102 (116)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55666667788999999999999999875
No 55
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.59 E-value=4.8 Score=27.13 Aligned_cols=9 Identities=56% Similarity=1.678 Sum_probs=7.6
Q ss_pred CCCCcCcee
Q 002171 233 TGPCGPCSE 241 (957)
Q Consensus 233 ~GpcGpcsE 241 (957)
.|||+||++
T Consensus 12 ~G~C~pC~~ 20 (20)
T PF01422_consen 12 PGPCPPCPQ 20 (20)
T ss_pred CCcCCCCCC
Confidence 599999974
No 56
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=49.78 E-value=1.1e+02 Score=35.12 Aligned_cols=196 Identities=15% Similarity=0.149 Sum_probs=110.4
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCccc------cccHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhh---hhhhhhh
Q 002171 285 LPAKHVDTGLGFERLTSILQNKMSNYDT------DVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYR---VVADHIR 355 (957)
Q Consensus 285 L~~k~iDtGmGlERl~~vlq~~~s~ydt------dlf~pli~~i~~~~~~~~y~g~~~~~~~~~~d~a~r---~iaDH~R 355 (957)
..-..+-++-+++|+..+.......+.. .-|.-....+.+..... .+ .+. -.+|| ..-..+|
T Consensus 34 ~d~~~~~~~~~~~~l~~l~~a~~~il~~~~~~~r~~F~~~~~~l~~~~~l~-----~p-~~~---a~~~~~d~~~f~~ir 104 (335)
T PF11867_consen 34 FDYSKFFEASPFERLELLDDAVDHILSLEDEERRKRFLKLVKELSKAYALC-----LP-DPE---AEEYRDDIAFFQAIR 104 (335)
T ss_pred CChHHhcCCChHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH-----CC-CHH---HHHHHHHHHHHHHHH
Confidence 3444567788899999988877666642 23444444444432210 11 110 01222 1335566
Q ss_pred hheeeecCCCc-cCCCCCchHHHHHHHHHHHHhHhh------hCCCccchhhHHHHHHHHhcC-CChhhHhcHHHHHHHH
Q 002171 356 TLSFAIADGSC-PGNEGREYVLRRILRRAVRYGSEV------LKAQDGFFNGLVNIVVKVMGD-VFPELKQREAHIREII 427 (957)
Q Consensus 356 ~~~~~i~dG~~-Psn~grgyvlRrllRRa~~~~~~~------l~~~~~fl~~lv~~v~~~~~~-~ypel~~~~~~i~~ii 427 (957)
+...-+..+-- |+....+.=+|.||-.++..- .. .|.+.|=++-|-+...+.+.. -+|.++- +.|+..|
T Consensus 105 ~~i~k~~~~~~~~~~~~~~~~i~~Lid~~I~s~-~v~~i~~~~~~~~~disild~eFl~~v~~~~~k~~~~--e~L~~~l 181 (335)
T PF11867_consen 105 AAIRKLYSDDDGPDIKEVEEKIRQLIDESIASE-GVVDIFEAAGLKKPDISILDDEFLEEVKKMKSKNLKA--ELLEKLL 181 (335)
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHHhcc-cchhHHhhcCCCCCChhhcCHHHHHHHHhccCchHHH--HHHHHHH
Confidence 66555544444 888888999999999999853 21 244444344444555454443 3777665 6788888
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhhcCCCCChHHHHHhhhccCCChhhHHHHHHH------cCceeChhhHHHHHH
Q 002171 428 AAEEASFGKTLL----KGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEE------RGLLVDIEGFNNAMD 497 (957)
Q Consensus 428 ~~Ee~~F~~tl~----~g~~~l~~~~~~~~~~~l~g~~~f~Lydt~G~P~dl~~~~a~e------~g~~vd~~~f~~~~~ 497 (957)
+.+.....+.-- +=.++|+++|++.+++.++-++++.-. +++.++|.++ .|++-++-.|+.++.
T Consensus 182 ~~~I~~~~~~N~~~~~~fsErLe~iI~~Y~~~~i~~~e~~~eL------i~la~el~~~~~r~~~~gLseeE~AFyd~L~ 255 (335)
T PF11867_consen 182 RDEIKVRMKENPVRYKKFSERLEEIIEKYNNRSISSEEVIEEL------IKLAKELREEEERAEELGLSEEELAFYDALA 255 (335)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH------HHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 877766543211 223467777777766778877777421 2445555443 344444444555554
Q ss_pred H
Q 002171 498 E 498 (957)
Q Consensus 498 ~ 498 (957)
+
T Consensus 256 ~ 256 (335)
T PF11867_consen 256 K 256 (335)
T ss_pred c
Confidence 3
No 57
>PLN02850 aspartate-tRNA ligase
Probab=48.81 E-value=22 Score=43.41 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhhCCCeeecCCCcccCC-CC-Cccccccccccc-cccccCCCCCC----CcccccccccccccccccCCC
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVPVN-DP-TLLFANAGMNQY-KPIFLGTADPN----TQLSKLTRACNTQKCIRAGGK 134 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp~~-d~-~llf~nAGm~~f-k~~flG~~~p~----~~~~~~~r~~~~QkCiR~ggk 134 (957)
.|-+.|-+||.++|...|..--|++.. ++ .-.|.- ..| ++++|-+.+-- .-.+.+.|+-..-+|+|..
T Consensus 230 ~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v---~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE-- 304 (530)
T PLN02850 230 QVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL---DYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAE-- 304 (530)
T ss_pred HHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee---ccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccC--
Confidence 566788999999999888544443311 11 012211 011 55556443210 0012367888899999973
Q ss_pred CCCCCCCCCCCCccccccccccc-ccc-cccHHHHHHHHHHHc
Q 002171 135 HNDLDDVGKDTYHHTFFEMLGNW-SFG-DYFKNEAIEWAWELL 175 (957)
Q Consensus 135 hnDl~~VG~~~rH~TfFeMlGn~-sfg-dYfK~eai~~awe~l 175 (957)
+ ..|.||.+=|.||--. +|+ +| +|.++.+=+++
T Consensus 305 -----~-s~t~RHl~EFt~Le~Em~~~~~y--~evm~~~E~ll 339 (530)
T PLN02850 305 -----D-SFTHRHLCEFTGLDLEMEIKEHY--SEVLDVVDELF 339 (530)
T ss_pred -----C-CCCCccchhhccchhhhhhhcCH--HHHHHHHHHHH
Confidence 3 2578999999999665 777 35 33444443333
No 58
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=47.74 E-value=15 Score=35.24 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=17.7
Q ss_pred HHHHHchhccCCCCCceEEEEEC
Q 002171 170 WAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 170 ~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
---+||.+.||||++|+|+.|+.
T Consensus 78 ~i~~~l~~~LgIp~~Riyi~f~d 100 (114)
T PF01187_consen 78 AITEFLEEELGIPPDRIYINFHD 100 (114)
T ss_dssp HHHHHHHHHHT--GGGEEEEEEE
T ss_pred HHHHHHHHHhCCCcCceEEEEEE
Confidence 34578999999999999999974
No 59
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=43.54 E-value=12 Score=41.20 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCCcc
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSPVV 85 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~slv 85 (957)
..++++.-.++|.+-|.+.+..+++.
T Consensus 19 ~~~~~~~i~~~~~~~Gf~e~~~~~v~ 44 (247)
T PF01409_consen 19 ITKFIREIRDIFVGMGFQEVEGPEVE 44 (247)
T ss_dssp HHHHHHHHHHHHHCTTSEEESTTSEE
T ss_pred HHHHHHHHHHHHHHCCCeEeeCCeEE
Confidence 66788888889999999999977773
No 60
>smart00438 ZnF_NFX Repressor of transcription.
Probab=37.00 E-value=15 Score=26.47 Aligned_cols=11 Identities=45% Similarity=1.304 Sum_probs=8.9
Q ss_pred CCCCcCceeEE
Q 002171 233 TGPCGPCSEIH 243 (957)
Q Consensus 233 ~GpcGpcsEi~ 243 (957)
.|||+||.+..
T Consensus 12 ~G~C~pC~~~~ 22 (26)
T smart00438 12 PGPCPPCKQXX 22 (26)
T ss_pred CCcCcCccccc
Confidence 49999999654
No 61
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=36.23 E-value=51 Score=38.14 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=37.8
Q ss_pred cCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCchHHHHHHHHhCCCC
Q 002171 237 GPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFERLTSILQNKMS 308 (957)
Q Consensus 237 GpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDtGmGlERl~~vlq~~~s 308 (957)
|--||+|--+. ...++ +..-.+-|+||..- -=|.-.+=-. --.|.++..-|.|.||||+||.|.+.
T Consensus 279 ~TQTEVyAyHP-kL~gs--~~kysdgWiEiATF--GlYSP~ALae-Y~Id~pVMNLGlGVERlaMIl~g~~D 344 (536)
T COG2024 279 GTQTEVYAYHP-KLVGS--IEKYSDGWIEIATF--GLYSPIALAE-YGIDYPVMNLGLGVERLAMILHGADD 344 (536)
T ss_pred CccceEEEecc-ccccc--ccccCCCcEEEEee--cccChHHHHH-cCCCCceeecchhHHHHHHHHhCchH
Confidence 45799994432 11011 12345679999853 2222111000 11566677789999999999998543
No 62
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=32.69 E-value=25 Score=39.47 Aligned_cols=48 Identities=21% Similarity=0.197 Sum_probs=37.7
Q ss_pred ccchhHHHHHHHh--h-hcCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002171 822 EGSLLEKTVASLK--S-KVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEEN 872 (957)
Q Consensus 822 ~~~~i~k~l~~~~--~-~~~g~~i~l~~~~~l~~~l~~l~~~lk~~~ke~~~l~ 872 (957)
+|++|+++++.|. . ..+|+++|+|++..+.+.|+++ +++..++.++.+
T Consensus 1 dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~l~~~l~~~---~~~~~~~~Gy~e 51 (298)
T cd00771 1 DHRRLGGELELFFFFDEAGPGLPFWLPKGAIIRNELEDF---LRELQRKRGYQE 51 (298)
T ss_pred ChhHHHHHcCCcccCCCCCCcceEEcccHHHHHHHHHHH---HHHHHHHcCCEE
Confidence 5889999988763 2 3689999999999999999998 666666656543
No 63
>KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.24 E-value=24 Score=40.79 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=22.0
Q ss_pred ccccCchHHHHHHHHhCCCCCccccccHHHHHHHH
Q 002171 289 HVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQ 323 (957)
Q Consensus 289 ~iDtGmGlERl~~vlq~~~s~ydtdlf~pli~~i~ 323 (957)
-.=-|||||||||||=+-| |.-+|...=+..-
T Consensus 296 gwafglgLerLAMll~~Ip---DiRlfWs~DeRFl 327 (436)
T KOG2783|consen 296 GWAFGLGLERLAMLLFDIP---DIRLFWSFDERFL 327 (436)
T ss_pred eeeeeccHHHHHHHHhcCc---chheeeccchHHH
Confidence 3456999999999997766 3456665544433
No 64
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=31.60 E-value=25 Score=39.37 Aligned_cols=104 Identities=14% Similarity=0.204 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccCCCCCc--cccccccccccc-cccCCCCCCC----cccccccccccccccccCC
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTL--LFANAGMNQYKP-IFLGTADPNT----QLSKLTRACNTQKCIRAGG 133 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~~d~~l--lf~nAGm~~fk~-~flG~~~p~~----~~~~~~r~~~~QkCiR~gg 133 (957)
++|-+.+-+||.++|...|..=-|++...+.. ..+..=- ..+. |+|-+.+--+ -.+.+.|+-...+|.|.
T Consensus 5 s~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~f~~~~~~-~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~fR~-- 81 (280)
T cd00777 5 SRVIKAIRNFLDEQGFVEIETPILTKSTPEGARDFLVPSRL-HPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFRD-- 81 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCCceecccc-CCCceeecccCHHHHHHHHHhcCcCcEEEeccceeC--
Confidence 46788899999999999884433433222211 1111100 0011 2232221000 00235688888999996
Q ss_pred CCCCCCCCCCCCCccccccccccc-ccccccHHHHHHHHHHHch
Q 002171 134 KHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLT 176 (957)
Q Consensus 134 khnDl~~VG~~~rH~TfFeMlGn~-sfgdYfK~eai~~awe~lt 176 (957)
++.+ +.||. -|.|++-. +|.|| ++.++..=+++.
T Consensus 82 -----e~~~-~~r~~-Ef~~~e~e~~~~~~--~dlm~~~e~li~ 116 (280)
T cd00777 82 -----EDLR-ADRQP-EFTQIDIEMSFVDQ--EDIMSLIEGLLK 116 (280)
T ss_pred -----CCCC-CCccc-eeEEeEeeeccCCH--HHHHHHHHHHHH
Confidence 3344 55665 88888654 67776 445555555544
No 65
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=30.06 E-value=82 Score=36.06 Aligned_cols=100 Identities=17% Similarity=0.338 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccc--------cccccCCCCCCC---c-ccccccccccccc
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY--------KPIFLGTADPNT---Q-LSKLTRACNTQKC 128 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~f--------k~~flG~~~p~~---~-~~~~~r~~~~QkC 128 (957)
++|-+.+-+||.++|..-|..--+++...+ |+..+| ++.+|-+.+.-+ - .+.+.|+-...+|
T Consensus 12 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~~------~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf~i~~~ 85 (329)
T cd00775 12 SKIISYIRKFLDDRGFLEVETPMLQPIAGG------AAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVYEIGRN 85 (329)
T ss_pred HHHHHHHHHHHHHCCCEEEECCccccCCCC------ccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEEEEecc
Confidence 467888999999999999865555553222 222333 334443332100 0 1236788888999
Q ss_pred cccCCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHHchh
Q 002171 129 IRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLTK 177 (957)
Q Consensus 129 iR~ggkhnDl~~VG~~~rH~TfFeMlGn-~sfgdYfK~eai~~awe~lt~ 177 (957)
+|.. ++| .||++=|.||-- .+|.|| +|.+..+=+++..
T Consensus 86 FR~E-------~~~--~rHl~EFt~le~e~~~~~~--~~~m~~~e~li~~ 124 (329)
T cd00775 86 FRNE-------GID--LTHNPEFTMIEFYEAYADY--NDMMDLTEDLFSG 124 (329)
T ss_pred ccCC-------CCC--CCCCCceEEEEEeeecCCH--HHHHHHHHHHHHH
Confidence 9972 344 699999999843 566666 4555555555443
No 66
>PRK09350 poxB regulator PoxA; Provisional
Probab=29.69 E-value=73 Score=36.08 Aligned_cols=113 Identities=18% Similarity=0.264 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccccc-cc-----------cCCCCCCCc----c-cccccc
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP-IF-----------LGTADPNTQ----L-SKLTRA 122 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~-~f-----------lG~~~p~~~----~-~~~~r~ 122 (957)
-++|.+.+-+||.++|..-|..--+.+. +. .+|.+.+|+. || |-+. |.-. + +...|+
T Consensus 8 r~~i~~~ir~~f~~~gf~EV~TP~l~~~-~~----~~~~~~~f~~~y~~~~~~~~~~~~L~~S-Pe~~~kr~la~~~~rv 81 (306)
T PRK09350 8 RAKIIAEIRRFFADRGVLEVETPILSQA-TV----TDIHLVPFETRFVGPGASQGKTLWLMTS-PEYHMKRLLAAGSGPI 81 (306)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEecc-cC----CCccCCceeeeeccccccCCcceEEecC-HHHHHHHHhhccccce
Confidence 3578999999999999999954444331 11 2344555543 22 2211 1000 0 124578
Q ss_pred cccccccccCCCCCCCCCCCCCCCccccccccccc-ccccccHHHHHHHHHHHchhccCCCCCceEEEE
Q 002171 123 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNW-SFGDYFKNEAIEWAWELLTKVYRLPADRLYATY 190 (957)
Q Consensus 123 ~~~QkCiR~ggkhnDl~~VG~~~rH~TfFeMlGn~-sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~ 190 (957)
....+|.|.. +. |.||.+=|.||--. +|.|| ++.+...=+++...++..+-+ .+||
T Consensus 82 f~i~~~FR~e-------~~--~~~H~~EFt~lE~y~~~~d~--~dlm~~~E~li~~i~~~~~~~-~i~~ 138 (306)
T PRK09350 82 FQICKSFRNE-------EA--GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLDCEPAE-SLSY 138 (306)
T ss_pred EEecceeecC-------CC--CCCCCcHHHhhhhhhhCCCH--HHHHHHHHHHHHHHHhcCCce-EEEH
Confidence 8888999972 22 67999999998554 55565 578888888887777664433 2565
No 67
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=26.28 E-value=41 Score=38.31 Aligned_cols=105 Identities=18% Similarity=0.324 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccCCCCC--ccccccc--cccc-cccccCCCCCCC---cc-ccccccccccccccc
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPT--LLFANAG--MNQY-KPIFLGTADPNT---QL-SKLTRACNTQKCIRA 131 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~~d~~--llf~nAG--m~~f-k~~flG~~~p~~---~~-~~~~r~~~~QkCiR~ 131 (957)
+.|-+.+-+||.++|...|..--+++...+. =.|..-. ..-| +|+||-+.+--+ -+ +.+.|+-...+|.|.
T Consensus 26 s~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR~ 105 (335)
T PF00152_consen 26 SAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFRN 105 (335)
T ss_dssp HHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-B
T ss_pred HHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcChHHHHhhhccccchhhhheecceec
Confidence 4677888999999999998665555533222 2333320 0011 345554432100 00 125667777999997
Q ss_pred CCCCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHc
Q 002171 132 GGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELL 175 (957)
Q Consensus 132 ggkhnDl~~VG~~~rH~TfFeMlG-n~sfgdYfK~eai~~awe~l 175 (957)
. +. .|.||..=|.||- -.+|.||.. .|+.+-+++
T Consensus 106 E-------~~-~~~rHl~EFtmLE~e~a~~~~~~--lm~~~e~li 140 (335)
T PF00152_consen 106 E-------ES-RTRRHLPEFTMLEWEMAFADYDD--LMDLIEELI 140 (335)
T ss_dssp S-------SS-CBTTBSSEEEEEEEEEETSSHHH--HHHHHHHHH
T ss_pred c-------Cc-ccccchhhhhhhhhccccCcHHH--hHHHHHHHH
Confidence 3 22 5899999999983 445667644 444444433
No 68
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=26.06 E-value=79 Score=28.56 Aligned_cols=32 Identities=6% Similarity=0.187 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHhhhc
Q 002171 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (957)
Q Consensus 437 tl~~g~~~l~~~~~~~~~~~l~g~~~f~Lydt 468 (957)
+.+.++..|+++++++.++.+|-++++.||..
T Consensus 6 sfEeal~~LE~Iv~~LE~~~l~Leesl~lyee 37 (76)
T PRK14063 6 SFEEAISQLEHLVSKLEQGDVPLEEAISYFKE 37 (76)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45667788999999998889999999999965
No 69
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.98 E-value=79 Score=28.50 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHhhhc
Q 002171 438 LLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (957)
Q Consensus 438 l~~g~~~l~~~~~~~~~~~l~g~~~f~Lydt 468 (957)
.+.++..|+++++++.++.+|-+++++||..
T Consensus 6 fEeal~~LE~IV~~LE~g~l~Leesl~lyee 36 (75)
T PRK14066 6 FETALKKLEEVVKKLEGGELSLDDSLKAFEE 36 (75)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4556677888888898899999999999975
No 70
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.51 E-value=83 Score=28.38 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHhhhc
Q 002171 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (957)
Q Consensus 437 tl~~g~~~l~~~~~~~~~~~l~g~~~f~Lydt 468 (957)
+.+.++..|+++++++.++.+|-++++.+|..
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~ 38 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLDMYQK 38 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 55677788999999998899999999999865
No 71
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=25.23 E-value=4.8e+02 Score=26.91 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=36.5
Q ss_pred HHHhhHHHHHHHHHHHHhCCceec-cccccc-CCceEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 002171 642 APNHTCTHMLNFALREVLGDHVDQ-KGSVVL-PEKLRFDFSHGKPVDPEHLRRIESIVNEQIK 702 (957)
Q Consensus 642 m~~HTA~HLLs~AL~kvlg~~~~q-~Gs~v~-~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~ 702 (957)
.-.||..||++..+|......... -=|+++ .-|||.-+- +.+=+.+-+..++..|+++..
T Consensus 51 ~~iHTlEHL~A~~iRnh~~g~~~iID~SPMGCrTGFYm~l~-G~~~~~~i~~~~~~~m~dvl~ 112 (161)
T COG1854 51 AGIHTLEHLLAGFIRNHLNGNVEIIDISPMGCRTGFYMILI-GTPTSQDIADVLEATMKDVLK 112 (161)
T ss_pred cchhhHHHHHHHHHHhcccCceeEEEecCcccccceEEEEE-CCCCHHHHHHHHHHHHHHHHc
Confidence 457999999999999876432111 112333 256666554 333334445677788888775
No 72
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=25.14 E-value=43 Score=41.69 Aligned_cols=47 Identities=15% Similarity=-0.024 Sum_probs=37.2
Q ss_pred cccchhHHHHHHHh--h-hcCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 002171 821 IEGSLLEKTVASLK--S-KVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAE 870 (957)
Q Consensus 821 ~~~~~i~k~l~~~~--~-~~~g~~i~l~~~~~l~~~l~~l~~~lk~~~ke~~~ 870 (957)
+||++|+++++.|. + ..+|.++|+|+|..|.+.|.++ +++...+.++
T Consensus 197 ~dH~~Lg~~~~L~d~~~~s~~G~~~~~P~G~~i~~~L~~~---~~~~~~~~G~ 246 (613)
T PRK03991 197 PPHVKLMREKELADYEPASDVGHMRYYPKGRLIRDLLEDY---VYNLVVELGA 246 (613)
T ss_pred CCHHHHHHHCCCcccccccCeeeEEEEcHHHHHHHHHHHH---HHHHHHHCCC
Confidence 48999999988763 2 2589999999999999999999 5555544443
No 73
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=25.10 E-value=39 Score=38.52 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=23.3
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCccccccH
Q 002171 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (957)
Q Consensus 285 L~~k~iDtGmGlERl~~vlq~~~s~ydtdlf~ 316 (957)
+| +|=-.|+|+|||.+++-|.++.=|+-+|.
T Consensus 301 ~p-p~~G~glG~eRLvm~l~g~~~Irdv~~FP 331 (335)
T PF00152_consen 301 MP-PHGGFGLGLERLVMLLLGLKNIRDVIPFP 331 (335)
T ss_dssp ---SEEEEEEEHHHHHHHHHT-SSGGGGSSS-
T ss_pred Cc-ccCcceehHHHHHHHHcCCCcHHheecCC
Confidence 55 47788999999999999999988875553
No 74
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=24.97 E-value=83 Score=28.75 Aligned_cols=32 Identities=9% Similarity=0.306 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHhhhc
Q 002171 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (957)
Q Consensus 437 tl~~g~~~l~~~~~~~~~~~l~g~~~f~Lydt 468 (957)
+.+.+++.|+++++++.++.+|-+++++||..
T Consensus 8 sfEeal~~LEeIV~~LE~~~l~Lees~~lyee 39 (80)
T PRK14067 8 DFEQQLARLQEIVDALEGGDLPLEESVALYKE 39 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 45677788999999998889999999999965
No 75
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=24.37 E-value=28 Score=41.76 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=24.1
Q ss_pred cccCchHHHHHHHHhCCCCCccccccHHHH
Q 002171 290 VDTGLGFERLTSILQNKMSNYDTDVFMPIF 319 (957)
Q Consensus 290 iDtGmGlERl~~vlq~~~s~ydtdlf~pli 319 (957)
=-.|||.+||+|+|-|.+|.=|+ ++.|.+
T Consensus 470 gG~GiGIDRLvMllT~~~sIRdV-ilFP~m 498 (502)
T COG1190 470 GGLGIGIDRLVMLLTNSPSIRDV-ILFPAM 498 (502)
T ss_pred CCccccHHHHHHHHcCCCchhhe-eccccc
Confidence 34799999999999999999998 555543
No 76
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=24.02 E-value=1.4e+02 Score=32.66 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCCcccCC--CCCc-cccccccccccc-----cccCCC-CCC-------Ccc--ccccc
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVN--DPTL-LFANAGMNQYKP-----IFLGTA-DPN-------TQL--SKLTR 121 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~slvp~~--d~~l-lf~nAGm~~fk~-----~flG~~-~p~-------~~~--~~~~r 121 (957)
-+.|++.+.+.|+++|...|....+.|.+ -.+. -....-|..|.. +.|-.. .|+ ++. ....|
T Consensus 5 ~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k 84 (261)
T cd00773 5 RRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPLPLK 84 (261)
T ss_pred HHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCCCeE
Confidence 35789999999999999999777776621 0000 001111222221 111100 000 000 01247
Q ss_pred ccccccccccCCCCCCCCCCCCC-CCcccccccccccccccccHHHHHHHHHHHchhccCCCC
Q 002171 122 ACNTQKCIRAGGKHNDLDDVGKD-TYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPA 183 (957)
Q Consensus 122 ~~~~QkCiR~ggkhnDl~~VG~~-~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~ 183 (957)
.+.+++|.|.. . ..-|+. ..+..-||++|.-|.- --.|.|.++++.|. .+|++.
T Consensus 85 ~~y~g~vfR~e----~-~~~g~~re~~Q~g~Eiig~~~~~--~daE~i~l~~~~l~-~lg~~~ 139 (261)
T cd00773 85 LYYIGPVFRYE----R-PQKGRYREFYQVGVEIIGSDSPL--ADAEVIALAVEILE-ALGLKD 139 (261)
T ss_pred EEEEcCEEecC----C-CCCCCccceEEeceeeeCCCChH--HHHHHHHHHHHHHH-HcCCCc
Confidence 88999999962 1 112332 3457778999886552 13689999999986 578654
No 77
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=23.87 E-value=1.7e+02 Score=34.15 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=69.8
Q ss_pred CcCCChHHHHHHHHHHhhhCCCeeecCCCcccCC---CCCccccccccccccccccCCC---CCC-----------Cccc
Q 002171 55 VVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVN---DPTLLFANAGMNQYKPIFLGTA---DPN-----------TQLS 117 (957)
Q Consensus 55 ~~~~~~~eir~~fl~ff~~~gH~~~~s~slvp~~---d~~llf~nAGm~~fk~~flG~~---~p~-----------~~~~ 117 (957)
|+-+...+|++++.+-|+++|...|....+-+.+ +.+--.+..-|..|.+- .|.. .|. +...
T Consensus 2 ~~~~~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpD~T~piaR~~~~~~~~ 80 (373)
T PRK12295 2 MPLSASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDE-NGEELCLRPDFTIPVCRRHIATAGG 80 (373)
T ss_pred CcchhHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECC-CCCEEeeCCCCcHHHHHHHHHcCCC
Confidence 3345688999999999999999999655554421 00000111224444321 1110 000 0011
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCC
Q 002171 118 KLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLP 182 (957)
Q Consensus 118 ~~~r~~~~QkCiR~ggkhnDl~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~ 182 (957)
...|.+-+++|.|. + .-...-.|++-||.+|.-+-- +--.|.|..|++.|. .+|++
T Consensus 81 ~p~R~~Y~g~VfR~-----~--~gr~rEf~Q~GvEiiG~~~~~-~aDaEvi~l~~~~L~-~lgl~ 136 (373)
T PRK12295 81 EPARYAYLGEVFRQ-----R--RDRASEFLQAGIESFGRADPA-AADAEVLALALEALA-ALGPG 136 (373)
T ss_pred CCeEEEEEccEEEC-----C--CCCCCcceEeeEEeeCCCCCc-cchHHHHHHHHHHHH-HcCCC
Confidence 12478888999996 3 222345668899999965411 235799999999887 47886
No 78
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=23.52 E-value=1e+02 Score=25.62 Aligned_cols=29 Identities=14% Similarity=0.397 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHhhhc
Q 002171 440 KGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (957)
Q Consensus 440 ~g~~~l~~~~~~~~~~~l~g~~~f~Lydt 468 (957)
.++..|+++++++.++.+|-+++++||..
T Consensus 3 e~~~~Le~Iv~~Le~~~~sLdes~~lyee 31 (53)
T PF02609_consen 3 EAMERLEEIVEKLESGELSLDESLKLYEE 31 (53)
T ss_dssp HHHHHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45667888888888889999999999864
No 79
>PLN02850 aspartate-tRNA ligase
Probab=23.50 E-value=39 Score=41.29 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=24.7
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002171 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (957)
Q Consensus 288 k~iDtGmGlERl~~vlq~~~s~ydtdlf~ 316 (957)
+|=-.|+|||||++++-|.++.=|+-+|.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FP 522 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFP 522 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecC
Confidence 46688999999999999999988876654
No 80
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=23.34 E-value=38 Score=38.12 Aligned_cols=49 Identities=8% Similarity=-0.109 Sum_probs=37.0
Q ss_pred hccccchhHHHHHHHh--h----hcCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 002171 819 SKIEGSLLEKTVASLK--S----KVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAE 870 (957)
Q Consensus 819 ~~~~~~~i~k~l~~~~--~----~~~g~~i~l~~~~~l~~~l~~l~~~lk~~~ke~~~ 870 (957)
..++|++|+++++.|. . ..+|.++|+|.+..|.++|+++ +++...+.++
T Consensus 17 ~~~~H~~i~~~~~l~d~~~~~~~~G~g~~~~~p~g~~l~~~l~~~---~~~~~~~~G~ 71 (297)
T cd00770 17 KPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINF---ALDFLTKRGF 71 (297)
T ss_pred CCCCHHHHHHHCCCccchhhcccCCCceeEECCHHHHHHHHHHHH---HHHHHHHCCC
Confidence 4568999999988873 1 2456889999999999999999 5555544444
No 81
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=23.25 E-value=99 Score=27.20 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHHhhhc
Q 002171 438 LLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (957)
Q Consensus 438 l~~g~~~l~~~~~~~~~~~l~g~~~f~Lydt 468 (957)
.+.++..|+++++++.++.+|-++++.+|.-
T Consensus 3 fEe~l~~Le~Iv~~LE~~~l~Leesl~lyee 33 (67)
T TIGR01280 3 FEEALSELEQIVQKLESGDLALEEALNLFER 33 (67)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4567778889999998889999999999864
No 82
>TIGR00758 UDG_fam4 uracil-DNA glycosylase, family 4. This well-conserved family of proteins is about 200 residues in length and homologous to the N-terminus of the DNA polymerase of phage SPO1 of Bacillus subtilis. The member from Thermus thermophilus HB8 is known to act as uracil-DNA glycosylase, an enzyme of DNA base excision repair. Its appearance as a domain of phage DNA polymerases could be consistent with uracil-DNA glycosylase activity.
Probab=23.23 E-value=1.1e+02 Score=31.56 Aligned_cols=64 Identities=19% Similarity=0.200 Sum_probs=41.0
Q ss_pred ccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcC-CCCCcH-H---HHHHHHhc---CCCCCcccCCCC
Q 002171 160 GDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKA-GLAPDN-E---ARDIWLKF---LPASRVLPFGCK 224 (957)
Q Consensus 160 gdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~-~~~~D~-e---~~~iW~~~---~~~~~i~~~~~~ 224 (957)
|.+|-..+=.+-+++|. .+||+++.+|+|.---..+. +-++++ | |...|.+. +.+.-|+.+|..
T Consensus 39 g~pf~g~sG~~L~~~l~-~~gl~~~~vy~t~~~kc~P~~~r~P~~~Ei~~c~~~l~~eI~~v~P~~Iv~lG~~ 110 (173)
T TIGR00758 39 GRPFVGRAGKLLDEMLA-AIGLSRENVYITNVVKCRPPNNRDPTPEEVEACAPYLVKQIELIRPKVIICLGRT 110 (173)
T ss_pred CCCCcChHHHHHHHHHH-HcCCCcccEEEeccccccCCCCCCcCHHHHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 34444455566666665 78999999999975433221 222343 3 66666655 888889988754
No 83
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=23.13 E-value=2.3e+02 Score=32.04 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCCcccCCCCCcc-----ccccccccccccccCCC---CCC-----------C--cccc
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLL-----FANAGMNQYKPIFLGTA---DPN-----------T--QLSK 118 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~ll-----f~nAGm~~fk~~flG~~---~p~-----------~--~~~~ 118 (957)
-.+|++.+.+.|+++|...|.+..+-|. +++ ..+..|..|..-= |.. .|. + ....
T Consensus 11 ~~~i~~~l~~~~~~~Gy~~i~tP~le~~---~~~~~~~~~~~~~~~~~~d~~-g~~l~LRpD~T~~iaR~~~~~~~~~~~ 86 (314)
T TIGR00443 11 KEEIERQLQDVFRSWGYQEIITPTLEYL---DTLSAGGGILNEDLFKLFDSL-GRVLGLRPDMTTPIARAVSTRLRDRPL 86 (314)
T ss_pred HHHHHHHHHHHHHHcCCeeccCcchhhH---HHhcccCCcchhceEEEECCC-CCEEeecCcCcHHHHHHHHHhcccCCC
Confidence 5689999999999999999966444441 111 1233455554320 221 110 0 0011
Q ss_pred cccccccccccccCCCCCCCCCCCC-CCCcccccccccccccccccHHHHHHHHHHHchhccCCC
Q 002171 119 LTRACNTQKCIRAGGKHNDLDDVGK-DTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLP 182 (957)
Q Consensus 119 ~~r~~~~QkCiR~ggkhnDl~~VG~-~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~ 182 (957)
..|.+-+.+|.|.. =..-|+ -..+.+-||.+|.=|.- =-.|.|.+|++.|.+ +|+.
T Consensus 87 p~r~~y~g~VfR~~-----~~~~gr~re~~Q~g~Eiig~~~~~--adaEvi~l~~~~l~~-lg~~ 143 (314)
T TIGR00443 87 PLRLCYAGNVFRTN-----ESGAGRSREFTQAGVELIGAGGPA--ADAEVIALLIEALKA-LGLK 143 (314)
T ss_pred CeEEEEeceEeecC-----CCcCCCcccccccceEEeCCCCch--hHHHHHHHHHHHHHH-cCCC
Confidence 24778889999962 222333 34568889999977663 347999999999985 7875
No 84
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=23.01 E-value=65 Score=26.92 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-++-.-+.+.+.||.|++++||.+.+
T Consensus 16 K~~l~~~it~~~~~~lg~~~~~i~V~i~E 44 (60)
T PF01361_consen 16 KRELAEAITDAVVEVLGIPPERISVVIEE 44 (60)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCCCeEEEEEEE
Confidence 56666666777888999999999998865
No 85
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=22.91 E-value=42 Score=40.16 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=23.6
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002171 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (957)
Q Consensus 288 k~iDtGmGlERl~~vlq~~~s~ydtdlf~ 316 (957)
++=--|||+|||++.+-|.++.=|+-+|.
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv~~FP 445 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDAIPFP 445 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccCc
Confidence 56677999999999999988877765543
No 86
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=22.75 E-value=42 Score=38.39 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=23.1
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 002171 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (957)
Q Consensus 288 k~iDtGmGlERl~~vlq~~~s~ydtdlf 315 (957)
+|--.|+|+|||++++-|.++.=|+-+|
T Consensus 297 p~~G~glGleRL~m~~~g~~~Irdv~~F 324 (329)
T cd00775 297 PTGGLGIGIDRLVMLLTDSNSIRDVILF 324 (329)
T ss_pred CCCcEEecHHHHHHHHcCCCcHHhcccC
Confidence 3677899999999999999887776444
No 87
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.59 E-value=98 Score=28.20 Aligned_cols=32 Identities=3% Similarity=0.224 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHhhhc
Q 002171 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (957)
Q Consensus 437 tl~~g~~~l~~~~~~~~~~~l~g~~~f~Lydt 468 (957)
+.+.+++.|+++++++.++.+|-++++.||.-
T Consensus 11 sfEea~~~LEeIv~~LE~~~l~Lees~~lyee 42 (80)
T PRK00977 11 SFEEALAELEEIVTRLESGDLPLEESLAAFER 42 (80)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 34566777888888888889999999999865
No 88
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=22.37 E-value=1e+02 Score=31.12 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCChHHHHH--hhhccCCChhhHHHHHHHcCc
Q 002171 419 REAHIREIIAAEEASFGKTLLKGIEKFKKAAQDV-QGKVLSGQDAFI--LWDTYGFPLDLTQLMAEERGL 485 (957)
Q Consensus 419 ~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~-~~~~l~g~~~f~--Lydt~G~P~dl~~~~a~e~g~ 485 (957)
.++.+++.++.-...|...+.++..+=...++.. ..+.+++++|.+ |-|..|..-|+...++++.|+
T Consensus 84 ~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~~~v 153 (154)
T PF01343_consen 84 ERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKLAGV 153 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHHcCC
Confidence 4578999999999999999999986444434433 345888888885 778888888888888777765
No 89
>PLN02221 asparaginyl-tRNA synthetase
Probab=22.25 E-value=1.9e+02 Score=35.84 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=34.9
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHHc
Q 002171 119 LTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELL 175 (957)
Q Consensus 119 ~~r~~~~QkCiR~ggkhnDl~~VG~~~rH~TfFeMlGn-~sfgdYfK~eai~~awe~l 175 (957)
+.|+-...+|+|+- + ..|.||++=|-||-- ++|.|| ++.+..+=+++
T Consensus 326 l~rVfeIgP~FRAE-------~-s~T~RHL~EFtmlE~Emaf~d~--~dvm~l~E~lv 373 (572)
T PLN02221 326 LSSVYTFGPTFRAE-------N-SHTSRHLAEFWMVEPEIAFADL--EDDMNCAEAYV 373 (572)
T ss_pred cCCeEEEccceecC-------C-CCCCcccccccceeeeeecCCH--HHHHHHHHHHH
Confidence 68899999999983 2 358899999999954 478887 55665554443
No 90
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=22.05 E-value=45 Score=40.95 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.3
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002171 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (957)
Q Consensus 288 k~iDtGmGlERl~~vlq~~~s~ydtdlf~ 316 (957)
+|=-.|+|||||++++-|..+.=|+-+|.
T Consensus 514 PhgG~GiGlERLvM~~lg~~nIR~v~lFP 542 (550)
T PTZ00401 514 PHGGFGVGLERVVMLYLGLSNVRLASLFP 542 (550)
T ss_pred CCceEEEhHHHHHHHHhCCCcHheeecCC
Confidence 36678999999999999999888776654
No 91
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=21.71 E-value=45 Score=41.14 Aligned_cols=29 Identities=38% Similarity=0.465 Sum_probs=25.0
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002171 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (957)
Q Consensus 288 k~iDtGmGlERl~~vlq~~~s~ydtdlf~ 316 (957)
+|---|||+|||++.+-|.++.=|+-+|.
T Consensus 550 PhgGfGLGiERLvm~ltGl~nIRDvi~FP 578 (586)
T PTZ00425 550 PHAGFGLGFERLIMLVTGVDNIKDTIPFP 578 (586)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEEECc
Confidence 67788999999999999999988885554
No 92
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=21.34 E-value=1.4e+02 Score=33.31 Aligned_cols=31 Identities=32% Similarity=0.427 Sum_probs=25.6
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCccccccH
Q 002171 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (957)
Q Consensus 285 L~~k~iDtGmGlERl~~vlq~~~s~ydtdlf~ 316 (957)
+| +|=-.|||+|||++++-|..|.=|+-+|.
T Consensus 246 ~p-P~~G~giGidRL~m~~~g~~~Irdv~~FP 276 (280)
T cd00777 246 AP-PHGGIALGLDRLVMLLTGSESIRDVIAFP 276 (280)
T ss_pred CC-CCCeEeEhHHHHHHHHcCCCchheEeecC
Confidence 44 57888999999999999999987775553
No 93
>PLN02532 asparagine-tRNA synthetase
Probab=20.95 E-value=48 Score=41.24 Aligned_cols=29 Identities=28% Similarity=0.262 Sum_probs=24.7
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002171 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (957)
Q Consensus 288 k~iDtGmGlERl~~vlq~~~s~ydtdlf~ 316 (957)
+|=--|||+|||++.+-|.++.=|+-+|.
T Consensus 597 PHgGfGLG~ERLvm~ltGl~nIRDvi~FP 625 (633)
T PLN02532 597 KHSGFSLGFELMVLFATGLPDVRDAIPFP 625 (633)
T ss_pred CCeEEEEhHHHHHHHHhCCCchheEeecC
Confidence 67788999999999999999988875554
No 94
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.88 E-value=1.2e+02 Score=27.57 Aligned_cols=32 Identities=9% Similarity=0.287 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHhhhc
Q 002171 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (957)
Q Consensus 437 tl~~g~~~l~~~~~~~~~~~l~g~~~f~Lydt 468 (957)
+.+.+++.|+++++++.++.+|-++++.+|..
T Consensus 7 sfEeal~~Le~IV~~LE~gdl~Leesl~lyee 38 (76)
T PRK14068 7 SFEEMMQELEQIVQKLDNETVSLEESLDLYQR 38 (76)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 44567777888888998889999999999875
No 95
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=20.29 E-value=61 Score=38.49 Aligned_cols=91 Identities=16% Similarity=0.271 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCCcccCCCC--Ccccccccccccc-ccccCCCCC---CCcccccccccccccccccCC
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDP--TLLFANAGMNQYK-PIFLGTADP---NTQLSKLTRACNTQKCIRAGG 133 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~slvp~~d~--~llf~nAGm~~fk-~~flG~~~p---~~~~~~~~r~~~~QkCiR~gg 133 (957)
-+.|.++|-+||.++|..-|.+-=+++...+ +-||-. ..|. +.||.+..- ..-...+.|+-+..+++|+
T Consensus 137 rs~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v---~yf~~~a~LtqS~QLyke~~~~al~rVf~igP~FRA-- 211 (435)
T COG0017 137 RSSILRAIREFFYENGFTEVHTPIITASATEGGGELFKV---DYFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRA-- 211 (435)
T ss_pred HHHHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEE---eecCcceEEecCHHHHHHHHHHHhCceEEecCceec--
Confidence 3578889999999999999877666664332 233332 2332 255544321 0000126899999999998
Q ss_pred CCCCCCCCCCCCCcccccccc-ccccccc
Q 002171 134 KHNDLDDVGKDTYHHTFFEML-GNWSFGD 161 (957)
Q Consensus 134 khnDl~~VG~~~rH~TfFeMl-Gn~sfgd 161 (957)
|+ -.|.||++=|-|+ -.-+|-|
T Consensus 212 -----E~-s~T~RHL~EF~~ld~Emaf~~ 234 (435)
T COG0017 212 -----EK-SNTRRHLSEFWMLDPEMAFAD 234 (435)
T ss_pred -----CC-CCCcchhhhHheecceeccCc
Confidence 33 3489999999887 2344444
No 96
>PLN02221 asparaginyl-tRNA synthetase
Probab=20.21 E-value=50 Score=40.69 Aligned_cols=29 Identities=34% Similarity=0.401 Sum_probs=24.3
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 002171 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (957)
Q Consensus 288 k~iDtGmGlERl~~vlq~~~s~ydtdlf~ 316 (957)
+|--.|||+|||.+.+-|.++.=|+-+|.
T Consensus 536 Ph~G~GlGiERLvm~l~g~~nIRdvi~FP 564 (572)
T PLN02221 536 KHCGFGLGFERMILFATGIDNIRDVIPFP 564 (572)
T ss_pred CCceEEEeHHHHHHHHcCCCchheEeecC
Confidence 46778999999999999999988875553
No 97
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.16 E-value=1.2e+02 Score=28.76 Aligned_cols=32 Identities=6% Similarity=0.276 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHhhhc
Q 002171 437 TLLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (957)
Q Consensus 437 tl~~g~~~l~~~~~~~~~~~l~g~~~f~Lydt 468 (957)
+.+.+++.|+++++++.++.+|-++++.||..
T Consensus 9 sFEeal~~LEeIV~~LEsgdl~LEesl~lyee 40 (95)
T PRK14069 9 SFEDALRELEQIAEKLERQDFSLEESLKAYER 40 (95)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 34567777899999998889999999999975
Done!