Query 002171
Match_columns 957
No_of_seqs 356 out of 2140
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 15:23:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 100.0 2E-192 8E-197 1705.0 50.2 633 56-799 55-752 (752)
2 2ztg_A Alanyl-tRNA synthetase; 100.0 2E-180 8E-185 1601.9 48.2 623 56-799 58-738 (739)
3 3hy0_A Alanyl-tRNA synthetase; 100.0 2E-171 7E-176 1424.6 30.7 424 58-506 2-438 (441)
4 1yfs_A Alanyl-tRNA synthetase; 100.0 2E-170 8E-175 1423.7 27.4 423 58-508 3-430 (465)
5 3kew_A DHHA1 domain protein; s 100.0 4.2E-52 1.4E-56 444.1 23.0 223 541-804 12-234 (241)
6 2e1b_A PH0108, 216AA long hypo 100.0 3.3E-47 1.1E-51 400.3 17.0 199 541-796 14-214 (216)
7 1qf6_A THRRS, threonyl-tRNA sy 100.0 5.5E-29 1.9E-33 299.8 16.5 208 638-870 66-290 (642)
8 1nyr_A Threonyl-tRNA synthetas 100.0 6.6E-29 2.3E-33 299.8 14.1 209 637-870 67-290 (645)
9 1tke_A Threonyl-tRNA synthetas 99.9 1.2E-26 3.9E-31 245.5 17.5 169 606-799 40-224 (224)
10 1v4p_A Alanyl-tRNA synthetase; 99.9 2.2E-25 7.7E-30 222.9 17.3 144 640-799 4-152 (157)
11 2zvf_A Alanyl-tRNA synthetase; 98.8 7.4E-08 2.5E-12 97.1 14.3 127 797-955 1-129 (171)
12 3g98_A Alanyl-tRNA synthetase; 97.0 0.00086 2.9E-08 62.8 6.6 65 889-955 6-72 (111)
13 3rf1_A Glycyl-tRNA synthetase 94.5 0.23 7.7E-06 52.7 11.5 177 56-312 23-201 (311)
14 1nnh_A Asparaginyl-tRNA synthe 92.1 0.3 1E-05 53.1 8.3 109 60-179 18-141 (294)
15 1j5w_A Glycyl-tRNA synthetase 83.9 0.37 1.3E-05 50.9 1.8 172 58-312 13-189 (298)
16 2dq3_A Seryl-tRNA synthetase; 70.8 8 0.00027 44.1 8.0 110 60-182 175-316 (425)
17 4dh4_A MIF; trimer, isomerase; 65.1 3.4 0.00012 38.0 2.8 30 163-192 72-101 (114)
18 3dsq_A Pyrrolysyl-tRNA synthet 64.1 41 0.0014 36.1 11.6 110 60-183 73-206 (288)
19 3fwu_A Macrophage migration in 59.5 5.3 0.00018 38.2 3.1 29 164-192 94-122 (133)
20 3djh_A Macrophage migration in 59.2 5.1 0.00017 37.0 2.8 30 163-192 71-100 (114)
21 3kan_A D-dopachrome tautomeras 58.2 5.4 0.00018 37.1 2.8 29 164-192 73-101 (117)
22 3b64_A Macrophage migration in 56.9 6.5 0.00022 35.9 3.1 30 163-192 72-101 (112)
23 2cja_A Seryl-tRNA synthetase; 55.4 37 0.0013 39.7 9.9 53 121-182 346-407 (522)
24 3fwt_A Macrophage migration in 54.8 6.5 0.00022 37.5 2.8 29 164-192 94-122 (133)
25 3t5s_A Gilaa.00834.A, macropha 52.7 6.8 0.00023 37.5 2.6 29 164-192 94-122 (135)
26 2wkb_A Macrophage migration in 51.2 8.9 0.0003 35.8 3.1 30 163-192 72-101 (125)
27 1hfo_A Migration inhibitory fa 50.6 8.5 0.00029 35.1 2.8 29 164-192 72-100 (113)
28 2xcz_A Possible ATLS1-like lig 50.5 8.5 0.00029 35.2 2.8 29 164-192 73-101 (115)
29 1eov_A ASPRS, aspartyl-tRNA sy 50.5 15 0.00051 42.7 5.5 99 62-176 183-293 (487)
30 3a5y_A GENX, putative lysyl-tR 49.2 22 0.00075 39.4 6.4 104 61-180 40-160 (345)
31 1uiz_A MIF, macrophage migrati 48.9 9.4 0.00032 35.0 2.8 29 164-192 73-101 (115)
32 2os5_A Acemif; macrophage migr 48.8 9.3 0.00032 35.3 2.8 29 164-192 73-101 (119)
33 3twe_A Alpha4H; unknown functi 46.7 20 0.0007 24.1 3.3 22 847-868 3-24 (27)
34 2opa_A Probable tautomerase YW 40.8 16 0.00054 29.1 2.7 30 163-192 15-44 (61)
35 1otf_A 4-oxalocrotonate tautom 40.1 16 0.00056 29.1 2.7 30 163-192 15-44 (62)
36 3abf_A 4-oxalocrotonate tautom 38.8 20 0.00069 28.7 3.1 29 164-192 17-45 (64)
37 3uh0_A Threonyl-tRNA synthetas 38.3 5.5 0.00019 45.9 -0.7 46 821-869 35-83 (460)
38 3n4h_A Putative tautomerase; C 37.6 17 0.0006 34.8 2.9 53 163-215 77-134 (148)
39 3l4g_A Phenylalanyl-tRNA synth 37.3 90 0.0031 36.3 9.2 24 60-83 227-250 (508)
40 3m20_A 4-oxalocrotonate tautom 37.3 30 0.001 28.0 3.9 29 164-192 15-43 (62)
41 1gyx_A YDCE, B1461, hypothetic 35.9 44 0.0015 28.2 4.8 42 163-211 16-57 (76)
42 3qtc_A Pyrrolysyl-tRNA synthet 35.1 62 0.0021 34.5 7.0 113 60-182 79-209 (290)
43 3m21_A Probable tautomerase HP 32.2 30 0.001 28.4 3.1 29 164-192 19-47 (67)
44 3lc0_A Histidyl-tRNA synthetas 29.9 1.1E+02 0.0036 35.1 8.2 115 61-186 47-183 (456)
45 3i7f_A Aspartyl-tRNA synthetas 29.9 44 0.0015 39.3 5.1 88 61-162 248-347 (548)
46 1mww_A Hypothetical protein HI 29.3 29 0.001 32.2 2.8 29 164-192 75-103 (128)
47 2aal_A Malonate semialdehyde d 26.7 34 0.0012 31.9 2.8 29 164-192 81-109 (131)
48 3a5y_A GENX, putative lysyl-tR 26.6 23 0.00079 39.2 1.9 28 288-315 313-340 (345)
49 1eh2_A EPS15; calcium binding, 26.2 1.2E+02 0.0041 27.2 6.4 47 453-499 27-77 (106)
50 3fia_A Intersectin-1; EH 1 dom 25.8 1.1E+02 0.0038 28.6 6.2 47 453-499 45-95 (121)
51 3mb2_A 4-oxalocrotonate tautom 25.8 40 0.0014 28.0 2.8 29 164-192 17-45 (72)
52 2x4k_A 4-oxalocrotonate tautom 25.2 41 0.0014 26.5 2.7 29 164-192 19-47 (63)
53 1wyd_A Hypothetical aspartyl-t 24.3 27 0.00094 39.8 1.9 103 61-177 138-248 (429)
54 3nem_A Aspartyl-tRNA synthetas 23.8 28 0.00095 39.9 1.8 102 62-175 142-258 (438)
55 1n9w_A Aspartyl-tRNA synthetas 23.2 29 0.001 39.4 1.9 103 61-177 129-240 (422)
56 3bju_A Lysyl-tRNA synthetase; 22.9 30 0.001 40.5 1.9 100 62-176 181-298 (521)
57 3m4p_A Ehasnrs, asparaginyl-tR 22.7 30 0.001 39.8 1.8 89 62-162 161-257 (456)
58 1qjt_A EH1, epidermal growth f 22.6 1.4E+02 0.0047 26.3 5.9 46 454-499 25-74 (99)
59 3i7f_A Aspartyl-tRNA synthetas 22.2 31 0.0011 40.6 1.8 27 289-315 513-539 (548)
60 1e1o_A Lysyl-tRNA synthetase, 22.0 32 0.0011 40.1 1.9 103 62-176 188-298 (504)
61 3a74_A Lysyl-tRNA synthetase; 21.9 32 0.0011 40.0 1.9 105 61-177 178-290 (493)
62 4ex5_A Lysine--tRNA ligase; st 21.8 32 0.0011 40.3 1.9 100 62-176 209-326 (529)
63 1x54_A Asparaginyl-tRNA synthe 21.7 32 0.0011 39.2 1.9 103 62-177 140-249 (434)
64 2xgt_A Asparaginyl-tRNA synthe 21.7 32 0.0011 39.2 1.8 99 62-174 137-243 (435)
65 1c07_A Protein (epidermal grow 21.0 1.8E+02 0.0061 25.1 6.3 47 454-500 24-74 (95)
66 1eov_A ASPRS, aspartyl-tRNA sy 21.0 34 0.0012 39.6 1.9 30 285-315 449-478 (487)
67 3ry0_A Putative tautomerase; o 20.3 58 0.002 26.4 2.7 29 164-192 16-44 (65)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=2.3e-192 Score=1704.96 Aligned_cols=633 Identities=28% Similarity=0.455 Sum_probs=576.1
Q ss_pred cCCChHHHHHHHHHHhhhCC---CeeecCCCcccCCCCCcccccccccccccccc-CCCCCCCccccccccccccccccc
Q 002171 56 VEWPATKVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRA 131 (957)
Q Consensus 56 ~~~~~~eir~~fl~ff~~~g---H~~~~s~slvp~~d~~llf~nAGm~~fk~~fl-G~~~p~~~~~~~~r~~~~QkCiR~ 131 (957)
++|+++|||++||+||++|| |++||||||||+||||||||||||+||||||+ |+++||+ +|+|+||||||+
T Consensus 55 ~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp~-----~r~~~~QkCiR~ 129 (752)
T 2zze_A 55 RXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPA-----NPLVISQPSIRF 129 (752)
T ss_dssp SCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCSS-----SSEEEEEEEECC
T ss_pred ccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCCC-----CCccccccceec
Confidence 57999999999999999999 99999999999999999999999999999997 9998874 799999999996
Q ss_pred CCCCCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHH
Q 002171 132 GGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEAR 206 (957)
Q Consensus 132 ggkhnDl~~VG~~~rH~TfFeMlGn~sfg-----dYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~ 206 (957)
|||||||+|+||||||||||||||| ||||+|||+|||||||++||||++||+ +
T Consensus 130 ----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~--~---------------- 187 (752)
T 2zze_A 130 ----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT--F---------------- 187 (752)
T ss_dssp ----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE--E----------------
T ss_pred ----CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchhhee--e----------------
Confidence 7999999999999999999999999 999999999999999999999999983 2
Q ss_pred HHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeeccccc------------
Q 002171 207 DIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF------------ 274 (957)
Q Consensus 207 ~iW~~~~~~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~------------ 274 (957)
+||||+|| |||||||||||| + |||||||||||
T Consensus 188 -----------------~dNfW~~G--GpcGPcsEI~~d---g--------------lEiwNlVFmq~~~~~~~~~~~~~ 231 (752)
T 2zze_A 188 -----------------KENPWAGG--GNAGPAFEVLYR---G--------------LEVATLVFMQYXXAPENAPQDQV 231 (752)
T ss_dssp -----------------EECCEEET--TEEECEEEEEET---T--------------EEEEEEEEEEEEECCTTCCSCCE
T ss_pred -----------------ccCcccCC--CCCCCceeEEEC---C--------------Eeeeeeeeeeeccccccccccch
Confidence 69999999 999999999998 1 99999999999
Q ss_pred -ccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCcchh
Q 002171 275 -NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDADK 342 (957)
Q Consensus 275 -~r~~~g~l~~L~~k~iDtGmGlERl~~vlq~~~s~ydtdlf~pli~~i~~~~~~~-----------~y~g~~~~~~~~~ 342 (957)
|| ++|+|.|||+||||||||||||+|||||++||||| +|.|||++|++++|++ +|+|.++.++...
T Consensus 232 ~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~~~~ 309 (752)
T 2zze_A 232 VVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDLGD 309 (752)
T ss_dssp EET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSSSSC
T ss_pred hcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCCccchhh
Confidence 88 69999999999999999999999999999999999 9999999999999986 2345554322111
Q ss_pred h------------------------hhhhhhhhhhhhhheeeecCCCccCCCCCchHHHHHHHHHHHHhHhhhCCCccch
Q 002171 343 V------------------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFF 398 (957)
Q Consensus 343 ~------------------------d~a~r~iaDH~R~~~~~i~dG~~Psn~grgyvlRrllRRa~~~~~~~l~~~~~fl 398 (957)
+ +.++||||||+||++|||+||++|||+|||||||||||||+|+| ++||++.+ |
T Consensus 310 ~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~-~~lg~~~~-l 387 (752)
T 2zze_A 310 LRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHL-RELGLEVP-L 387 (752)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHH-HHTTCCCC-H
T ss_pred HHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHH-HHhCCCcc-h
Confidence 1 46889999999999999999999999999999999999999999 47999999 9
Q ss_pred hhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCChHHHHHhhhccCCChhh
Q 002171 399 NGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFPLDL 475 (957)
Q Consensus 399 ~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~---~~~l~g~~~f~Lydt~G~P~dl 475 (957)
++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++ ++.|||++||+||||||||+||
T Consensus 388 ~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~dl 467 (752)
T 2zze_A 388 SEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEI 467 (752)
T ss_dssp HHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCHHH
T ss_pred hHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccCCCHHH
Confidence 9999999999999999999999999999999999999999999999999998864 2579999999999999999999
Q ss_pred HHHHHHHcCceeChh-hHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcc--cceeeeEEEEEE
Q 002171 476 TQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAI 552 (957)
Q Consensus 476 ~~~~a~e~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~Y~--y~~~~~a~Vl~i 552 (957)
|++||+|+|++||++ +|+++|++|++++|++.. ... .+ ...+ ...|+|+ +.+|+ |.++++|+|++|
T Consensus 468 t~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~--~~~---~~---~~~~--~~~~~T~-~l~Y~~~yl~~~~a~Vl~i 536 (752)
T 2zze_A 468 VXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKG--EEL---VD---FELL--KDLPDTR-RLYYEDPFMXEFDAXVLRV 536 (752)
T ss_dssp HHHHHTTSSCCCCCCTTHHHHHHGGGGCC---------C---CC---SSSS--SSSCCCE-EHHHHCTTCCEEEEEEEEE
T ss_pred HHHHHHHcCCccCCcccHHHHHHHHHHHHhhccc--ccc---hh---hHHh--ccCCCce-eecccCCccceEEEEEEEE
Confidence 999999999999999 899999999998876421 000 00 0111 1346675 77887 347899999999
Q ss_pred EeCCeeeeeccCCCeEEEEecceeEEEecCCeeccceeEeccceeEEEEeEEEECCEEEEEEEeecCCcccCCCCEEEEE
Q 002171 553 YTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVICK 632 (957)
Q Consensus 553 ~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l~~G~~V~~~ 632 (957)
.. ..||||+|+|||||||||+|+|+|..++..+.|.+|++.+|.++|.+.. . +.+.+|++|.+.
T Consensus 537 ~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~-~--~~l~vGd~V~~~ 600 (752)
T 2zze_A 537 IX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVED-P--GAFXEGMIVHGX 600 (752)
T ss_dssp ET-------------TEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESC-G--GGCCTTCEEEEE
T ss_pred Ec-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccc-c--CccCcCCeEEEE
Confidence 73 3699999999999999999999998776789999999999999999863 3 678899999999
Q ss_pred EchhhhhhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEc
Q 002171 633 VDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEA 712 (957)
Q Consensus 633 VD~erR~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~ 712 (957)
|||+||+.+|++|||+|||++||+++||.+++|.|+++.++++||||++..++|++++++||++||++|++|+||++.++
T Consensus 601 VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~~~ 680 (752)
T 2zze_A 601 IDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWEWL 680 (752)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEEE
T ss_pred EeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCccceeec
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred CHHHHHhhcCccccc--CCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeeccCCe
Q 002171 713 TLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGI 790 (957)
Q Consensus 713 ~~eEA~~~~g~r~~~--~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~~kG~ 790 (957)
+++||+++++. ++| +++|.+.||||+|| ++|+++||||||+|||+||.|+|++++++++|+
T Consensus 681 s~eEA~~~~~~-~lf~~ge~ygd~VRVV~IG----------------d~svelCGGTHV~nTgeIG~fKIls~s~i~~Gv 743 (752)
T 2zze_A 681 PRTTAEQXYGF-RLYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIXILRTERIQDGV 743 (752)
T ss_dssp EHHHHHHHHCG-GGCSSCCCCSSEEEEEEET----------------TTEEEECCSCCCSBGGGGCCEEEEEEEEEETTE
T ss_pred CHHHHhhcchh-hhhcCCCCCCCeEEEEEEC----------------CceeCCCCCCccCCHhHccEEEEEEEEEEcCCE
Confidence 99999998655 444 67788899999998 579999999999999999999999999999999
Q ss_pred EEEEEEeCh
Q 002171 791 RRITAVTTG 799 (957)
Q Consensus 791 ~RI~~vtG~ 799 (957)
+||+|+||.
T Consensus 744 rRIeavtG~ 752 (752)
T 2zze_A 744 ERIIFACGE 752 (752)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEeCC
Confidence 999999984
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.3e-180 Score=1601.93 Aligned_cols=623 Identities=28% Similarity=0.461 Sum_probs=568.4
Q ss_pred cCCChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccccccccccccc-CCCCCCCcccccccccccccccccCCC
Q 002171 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAGGK 134 (957)
Q Consensus 56 ~~~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~fl-G~~~p~~~~~~~~r~~~~QkCiR~ggk 134 (957)
++|+++|||++|++||+++||+++|||||||+||||||||||||+||||||+ |..+|++ .|+|++|||||+
T Consensus 58 ~~~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft~agm~~fkp~~~~g~~~p~~-----~~~~~~Q~ciR~--- 129 (739)
T 2ztg_A 58 KPFELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPA-----NPLTISQPCIRL--- 129 (739)
T ss_dssp SCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCSS-----SSEEEEEEEECG---
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCCceeeecChhhCcHhHhCCCCCCCC-----CCcccccccccC---
Confidence 4699999999999999999999999999999999999999999999999997 9988863 799999999997
Q ss_pred CCCCCCCCCCCCcccccccccccccc-----cccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHH
Q 002171 135 HNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIW 209 (957)
Q Consensus 135 hnDl~~VG~~~rH~TfFeMlGn~sfg-----dYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW 209 (957)
|||||||+|+||||||||||||||| ||||+|||+|||||| ++|||||+|| ++
T Consensus 130 -~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l-~~~g~~~~~i--~~------------------- 186 (739)
T 2ztg_A 130 -DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL-NELGVKKEDI--VY------------------- 186 (739)
T ss_dssp -GGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHH-HHHTCCGGGC--EE-------------------
T ss_pred -cccccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHHH-HHhCCCHHHe--ee-------------------
Confidence 7999999999999999999999999 999999999999999 8899999987 22
Q ss_pred HhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccc------
Q 002171 210 LKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLK------ 283 (957)
Q Consensus 210 ~~~~~~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~------ 283 (957)
+||||+|| |||||||||||| | |||||+|||||||+++|++.
T Consensus 187 --------------~dnfW~~g--Gp~Gpc~Ei~~d---g--------------~EiwnlVfmq~~r~~~g~~~~~~~~y 233 (739)
T 2ztg_A 187 --------------KEEPWAGG--GNAGPCLEAIVG---G--------------LEVATLVFMNLEEHPEGDIEIKGARY 233 (739)
T ss_dssp --------------EEEEEEET--TEEEEEEEEEET---T--------------EEEEEEEEEEEEECTTCCEEETTEEE
T ss_pred --------------ccCcccCC--CCCCCeeEEEEC---C--------------EEeeeeeeEEeeecCCCceeecCccc
Confidence 69999999 999999999998 2 99999999999999999998
Q ss_pred -cCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC----------------CCCCCCCCCcchhhh--
Q 002171 284 -PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR----------------PYSGKVGADDADKVD-- 344 (957)
Q Consensus 284 -~L~~k~iDtGmGlERl~~vlq~~~s~ydtdlf~pli~~i~~~~~~~----------------~y~g~~~~~~~~~~d-- 344 (957)
|||+|+||||||||||+|+|||++||||| +|.|||++|++++|++ +|+|+++.++.+.++
T Consensus 234 ~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~y~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~ 312 (739)
T 2ztg_A 234 RKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLNQL 312 (739)
T ss_dssp EEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCSSCTTCHHHHHHHHHHHHHHHHHTTCCTHHHHHH
T ss_pred cCCCCCeEecCcCHHHHHHHHcCCCchHHh-hHHHHHHHHHHHhCCCccccccchhhhhhhhhhcccccCcccchhHHHH
Confidence 99999999999999999999999999999 9999999999999985 123444433312111
Q ss_pred ----------------------hhhhhhhhhhhhheeeecCCCccCCCCCchHHHHHHHHHHHHhHhhhCCCccchhhHH
Q 002171 345 ----------------------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLV 402 (957)
Q Consensus 345 ----------------------~a~r~iaDH~R~~~~~i~dG~~Psn~grgyvlRrllRRa~~~~~~~l~~~~~fl~~lv 402 (957)
.++||||||+||++|||+||++|||+|||||||||||||+|+| ++||++.+ |++||
T Consensus 313 ~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~lv 390 (739)
T 2ztg_A 313 RKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA-EELELGLD-LYDLV 390 (739)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHH-HHTTCSSC-HHHHH
T ss_pred HHHhhhhcccchhhhhhhccccceEEEEecHHHHHHHHhccCcccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHHHH
Confidence 4788999999999999999999999999999999999999999 57999999 99999
Q ss_pred HHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHhhhccCCChhhHHHHHHH
Q 002171 403 NIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEE 482 (957)
Q Consensus 403 ~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~~~~l~g~~~f~Lydt~G~P~dl~~~~a~e 482 (957)
|.|++.|++ ||.++++.|++||+.||++|.+||++|+++|+++++++++ |||++||+||||||||+|||++||+|
T Consensus 391 ~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~--l~g~~af~LyDTyGfP~dlt~~ia~e 465 (739)
T 2ztg_A 391 EMHKKILGF---EFDVPLSTVQEILELEKERYRTTVSKGTRLVERLVERKKK--LEKDDLIELYDSHGIPVELAVGIAAE 465 (739)
T ss_dssp HHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSB--CCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 999999999 9999999999999999999999999999999999988743 99999999999999999999999999
Q ss_pred cCceeChh-hHHHHHHHHHHHhHhhhhcccCCccccchhHHHHHhhcCCCCcccccCcc--cceeeeEEEEEEEeCCeee
Q 002171 483 RGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSEFI 559 (957)
Q Consensus 483 ~g~~vd~~-~f~~~~~~~~~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~t~~~~~Y~--y~~~~~a~Vl~i~~~~~~~ 559 (957)
+|++||++ +|+++|++|+++||++.. . + + .+. .+.|+|+ +.+|+ |..+++|+|++|..
T Consensus 466 ~g~~vd~~~~F~~~m~~q~~~a~~~~~---~-----~---~-~~~-~~~~~T~-~l~Y~~~y~~~~~a~Vl~i~~----- 526 (739)
T 2ztg_A 466 KGAEVEMPKDIYAELAKRHSKAEKVQE---K-----K---I-TLQ-NEYPATE-KLYYDDPTLLEFEAEVIGVEG----- 526 (739)
T ss_dssp TTCBCCCCTTHHHHHHHTTSBCCCCCC---C-----C---C-CCS-SCCCCCE-ECTTTCTTCCEEEEEEEEEET-----
T ss_pred cCCeeCCcccHHHHHHHHHHHHhhccc---c-----c---h-hhh-ccCCCce-eecccCCcccEEEEEEEEEEc-----
Confidence 99999999 899999999988865311 1 1 0 111 1246675 88888 34789999999973
Q ss_pred eeccCCCeEEEEecceeEEEecCCeeccceeEeccceeEEEEeEEEECCEEEEEEEeecCCccc-CCCCEEEEEEchhhh
Q 002171 560 ESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRF-SVGEEVICKVDYDRR 638 (957)
Q Consensus 560 ~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~~~l-~~G~~V~~~VD~erR 638 (957)
..||||+|+|||||||||+|+|+|..++..+.|.+|++.+|.++|.+. +.+ ++|++|.+.|||+||
T Consensus 527 --------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~-----~~~~~~Gd~V~~~VD~~rR 593 (739)
T 2ztg_A 527 --------DFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVK-----GAKPEVGTKVKGVIDSDVR 593 (739)
T ss_dssp --------TEEEESEECCCCSBTTBCCCCEEEEETTEEEEECEEEEETTEEEEECC-----SSCCCTTCEEEEEECHHHH
T ss_pred --------CEEEEeCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEc-----ccCCCCCCEEEEEEcHHHH
Confidence 369999999999999999999999877678999999999999999875 344 699999999999999
Q ss_pred hhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHH
Q 002171 639 KLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAK 718 (957)
Q Consensus 639 ~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eEA~ 718 (957)
+.+|++|||+|||++|++++||.+++|.|++++++++||||++..++|++++.+||++||++|++|+||++.+++++||+
T Consensus 594 ~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~ 673 (739)
T 2ztg_A 594 WRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAE 673 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hhcCccccc-CCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeeccCCeEEEEEEe
Q 002171 719 CINGLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVT 797 (957)
Q Consensus 719 ~~~g~r~~~-~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~~kG~~RI~~vt 797 (957)
++++++.+. +.+|.+.||||+|| + ++++||||||+|||+||.|+|++++++++|++||+|+|
T Consensus 674 ~~~~l~L~~~~~~~~d~VRVV~IG----------------d-~~elCGGTHV~nTgeIg~fkIls~s~i~~GvrRIeavt 736 (739)
T 2ztg_A 674 RKFGFRLYQGGVPPGRKIRVVQVG----------------D-DVQACGGTHCRSTGEIGMLKILKVESIQDGVIRFEFAA 736 (739)
T ss_dssp HHHCGGGGTTCCCCSSEEEEEEET----------------T-EEEECCSCCCSBGGGGCCEEEEEEEEEETTEEEEEEEE
T ss_pred HhCCHhhhcCCCCCCCeEEEEEEC----------------C-eeeCcCCcCcccHhHcCcEEEEEEeEEcCCEEEEEEEe
Confidence 987654443 45677899999998 3 79999999999999999999999999999999999999
Q ss_pred Ch
Q 002171 798 TG 799 (957)
Q Consensus 798 G~ 799 (957)
|.
T Consensus 737 G~ 738 (739)
T 2ztg_A 737 GE 738 (739)
T ss_dssp SC
T ss_pred cC
Confidence 96
No 3
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=2e-171 Score=1424.64 Aligned_cols=424 Identities=50% Similarity=0.891 Sum_probs=405.1
Q ss_pred CChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 002171 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (957)
Q Consensus 58 ~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhnD 137 (957)
++++|||++||+||++|||++||||||||+||||||||||||+||||||+|+++|+ ++|+|||||||||||||||
T Consensus 2 ~~~~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~~~sQkCiR~gGKHnD 76 (441)
T 3hy0_A 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRN-----YSRATTSQRCVRAGGKHND 76 (441)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCC-----CCCccccccceecCCCCCC
Confidence 57999999999999999999999999999999999999999999999999999886 5899999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHch--hccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--C
Q 002171 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLT--KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--L 213 (957)
Q Consensus 138 l~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt--~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~--~ 213 (957)
|||||+|+|||||||||||||||||||+|||+||||||| ++|||||+|||||||+ .|+||++||++. |
T Consensus 77 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~--------~D~Ea~~iW~~~~Gv 148 (441)
T 3hy0_A 77 LENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYE--------SDDEAYEIWEKEVGI 148 (441)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEET--------TCHHHHHHHHHTTCC
T ss_pred HHhhCCCCccccceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeC--------CCHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999 6799999999999997 489999999995 9
Q ss_pred CCCCcccCC-------CCCCcccCCCCCCCcCceeEEeecCCCCC--CCCCCCCCCCCeeEEeeecccccccCCCCcccc
Q 002171 214 PASRVLPFG-------CKDNFWEMGDTGPCGPCSEIHYDRTGNRD--AASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284 (957)
Q Consensus 214 ~~~~i~~~~-------~~dNfW~mG~~GpcGpcsEi~yd~~~~~~--~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~ 284 (957)
|++||+++| .+||||+||++||||||||||||+|+... ..+.+++||+|||||||+|||||||+++|+|.|
T Consensus 149 p~~rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~p 228 (441)
T 3hy0_A 149 PRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEP 228 (441)
T ss_dssp CGGGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEE
T ss_pred CHHHeeecCccccccccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCCCcccc
Confidence 999999999 89999999999999999999999974321 123578999999999999999999999999999
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhhhhhhhhheeeecCC
Q 002171 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADG 364 (957)
Q Consensus 285 L~~k~iDtGmGlERl~~vlq~~~s~ydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~d~a~r~iaDH~R~~~~~i~dG 364 (957)
||+||||||||||||+|||||++||||||+|.|||+++++++|.. | ..+.||||||||+||++|||+||
T Consensus 229 Lp~k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-~----------~~~~s~rvIADH~R~~~f~iaDG 297 (441)
T 3hy0_A 229 LPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGAT-D----------LSNKSLRVIADHIRSCAFLIADG 297 (441)
T ss_dssp EEEEEEEEEEEHHHHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCC-C----------TTCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCceecCCCHHHHHHHHcCCCccccchhHHHHHHHHHHHhCCC-c----------cccceeEEecchHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999984 4 13689999999999999999999
Q ss_pred CccCCCCCchHHHHHHHHHHHHhHhhhCCCccchhhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002171 365 SCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEK 444 (957)
Q Consensus 365 ~~Psn~grgyvlRrllRRa~~~~~~~l~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~ 444 (957)
++|||+|||||||||||||+|+|+ +||++.+||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++
T Consensus 298 v~PsNeGrGYVLRRilRRAvr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~ 376 (441)
T 3hy0_A 298 VMPSNENRGYVLRRIIRRAVRHGN-MLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLAL 376 (441)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHH-HHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cccCCCCcchhHHHHHHHHHHHHH-HhCCCCccHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999994 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHhhhccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhh
Q 002171 445 FKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSA 506 (957)
Q Consensus 445 l~~~~~~~~~~~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~ 506 (957)
|++.+++.+++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++
T Consensus 377 l~~~~~~~~~~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~rar~~ 438 (441)
T 3hy0_A 377 LDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438 (441)
T ss_dssp HHHHHHSCCSSEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhc
Confidence 99999877556899999999999999999999999999999999999999999999999875
No 4
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=2.4e-170 Score=1423.66 Aligned_cols=423 Identities=48% Similarity=0.894 Sum_probs=405.0
Q ss_pred CChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 002171 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (957)
Q Consensus 58 ~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~flG~~~p~~~~~~~~r~~~~QkCiR~ggkhnD 137 (957)
|+++|||++||+||++|||+++|||||||+||||||||||||+||||||+|+++|+ ++|+|+||||||+||||||
T Consensus 3 ~~~~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~t~sQkCiRag~~hND 77 (465)
T 1yfs_A 3 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHND 77 (465)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCC-----CCceeccccccccCCCccc
Confidence 89999999999999999999999999999999999999999999999999999887 4899999999999999999
Q ss_pred CCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CCC
Q 002171 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPA 215 (957)
Q Consensus 138 l~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~--~~~ 215 (957)
|||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||+ .|+||++||++. +|+
T Consensus 78 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~--------~D~Ea~~iW~~~~G~p~ 149 (465)
T 1yfs_A 78 LEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYK--------DDEEAYRIWNEHIGIPS 149 (465)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEET--------TCHHHHHHHHTTTCCCG
T ss_pred HhhcCCCCCccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCHHHeEEEEeC--------CCHHHHHHHHHhcCCCH
Confidence 9999999999999999999999999999999999999999999999999999997 499999999996 999
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccCch
Q 002171 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (957)
Q Consensus 216 ~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDtGmG 295 (957)
+||+++|.+||||+||++||||||||||||+|++++ +|+|||||||+|||||||++||+|.|||+||||||||
T Consensus 150 ~rI~~~g~~dNFW~mG~tGPCGPCsEI~yD~g~~~~-------~~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmG 222 (465)
T 1yfs_A 150 ERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYE-------GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMG 222 (465)
T ss_dssp GGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTSC-------HHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred HHeeeCCCcCCcccCCCCcCCCCCeEEEEccCCCCC-------CCCCEEEeeeeeeeEEEecCCCccccCCCCceecCcC
Confidence 999999999999999999999999999999987754 2789999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCcchhhhhhhhhhhhhhhhheeeecCCCccCCCCCchH
Q 002171 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (957)
Q Consensus 296 lERl~~vlq~~~s~ydtdlf~pli~~i~~~~~~~~y~g~~~~~~~~~~d~a~r~iaDH~R~~~~~i~dG~~Psn~grgyv 375 (957)
||||+|||||++||||||+|.|||++|++++|++ |.. + +..|+||||||||+||++|||+||++|||+|||||
T Consensus 223 LERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-Y~~----~--~~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGYV 295 (465)
T 1yfs_A 223 LERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YGE----K--FETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295 (465)
T ss_dssp HHHHHHHHTTCSSGGGSTTTHHHHHHHHHHHCCC-TTS----C--HHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHH
T ss_pred HHHHHHHHcCCCccchhhhHHHHHHHHHHHhCCC-CCC----C--cccceeEEEEcchhhhhhhhhccccccCCCCcchH
Confidence 9999999999999999999999999999999985 742 1 45678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhCCCccchhhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q 002171 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-- 453 (957)
Q Consensus 376 lRrllRRa~~~~~~~l~~~~~fl~~lv~~v~~~~~~~ypel~~~~~~i~~ii~~Ee~~F~~tl~~g~~~l~~~~~~~~-- 453 (957)
||||||||+|+|+ +||++.+||++|||+|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++
T Consensus 296 LRRilRRavr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~ 374 (465)
T 1yfs_A 296 IRRILRRAMRFGY-KLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEE 374 (465)
T ss_dssp HHHHHHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999995 6999999999999999999999999999999999999999999999999999999999998864
Q ss_pred -CCCCChHHHHHhhhccCCChhhHHHHHHHcCceeChhhHHHHHHHHHHHhHhhhh
Q 002171 454 -GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQN 508 (957)
Q Consensus 454 -~~~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~~vd~~~f~~~~~~~~~~sr~~~~ 508 (957)
+++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++
T Consensus 375 ~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar~~~~ 430 (465)
T 1yfs_A 375 GRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFK 430 (465)
T ss_dssp TCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTTTC--
T ss_pred CCCcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHHhhhh
Confidence 2369999999999999999999999999999999999999999999999998754
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=4.2e-52 Score=444.08 Aligned_cols=223 Identities=23% Similarity=0.289 Sum_probs=203.8
Q ss_pred cceeeeEEEEEEEeCCeeeeeccCCCeEEEEecceeEEEecCCeeccceeEeccceeEEEEeEEEECCEEEEEEEeecCC
Q 002171 541 WFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGA 620 (957)
Q Consensus 541 y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~~g~i~H~~~~~~~~ 620 (957)
|..+++|+|++|..+ ++.+.|+||+|+|||||||||+|+|+|. .++|.+|++.+|.++|++.
T Consensus 12 y~~~~~a~V~~~~~~---------~~~~~vvLd~T~FYpegGGQ~~D~G~i~----~~~V~~v~~~~g~i~H~~~----- 73 (241)
T 3kew_A 12 YIKEFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLID----GIKVLDVYEEEGKVYHVLE----- 73 (241)
T ss_dssp TCCEEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEET----TEEEEEEEEETTEEEEEES-----
T ss_pred ccceeEEEEEEEEec---------CCeEEEEEeCCcccCCCCCCCCCEEEEe----eEEEEEEEEeCCEEEEEEC-----
Confidence 678999999999863 3468899999999999999999999993 5899999999999999985
Q ss_pred cccCCCCEEEEEEchhhhhhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHH
Q 002171 621 GRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQ 700 (957)
Q Consensus 621 ~~l~~G~~V~~~VD~erR~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~Nei 700 (957)
+++++|++|.+.|||+||+++|++|||+|||++||+++||.+ +.|+++.++++||||+ +++|++++.+||++||++
T Consensus 74 ~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~lt~e~l~~IE~~vn~~ 149 (241)
T 3kew_A 74 KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GFLDEKTIREAEKEANRL 149 (241)
T ss_dssp SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SCCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC--CCCCHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999986 5999999999999999 689999999999999999
Q ss_pred HHcCCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEE
Q 002171 701 IKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFAL 780 (957)
Q Consensus 701 I~~nlpV~~~~~~~eEA~~~~g~r~~~~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI 780 (957)
|++|+||++.+++++||+++ +++++ .++|++.||+|+|+ ++|+++||||||+|||+||.|+|
T Consensus 150 I~~~~pV~~~~~~~~eA~~~-~~~~~-~e~~~~~VRvv~ig----------------~~~~~~CgGtHV~~TgeIg~fkI 211 (241)
T 3kew_A 150 IFENLEVKSYAPSKKELKKV-KTRRA-LPKTDEEIRIVEIV----------------GLDLNACCGVHPRNTRDLQVIKI 211 (241)
T ss_dssp HHHTCBEEEECCCTTTTTTC-CCSSC-CCCCSSCCCEEEET----------------TTEEEECCSCCCSBSGGGCCEEE
T ss_pred HHcCCCEEEEEcCHHHHHhc-Chhhc-CCccCCcEEEEEEC----------------CeEEEcCCCCCcCCHhhcCCEEE
Confidence 99999999999999999997 56665 56688999999998 57999999999999999999999
Q ss_pred EeeeeccCCeEEEEEEeChHHHHH
Q 002171 781 LSEEGIAKGIRRITAVTTGLAYKA 804 (957)
Q Consensus 781 ~~~~~~~kG~~RI~~vtG~~A~~~ 804 (957)
++.+++ +|.+||+|+||.+|++.
T Consensus 212 ~~~~~~-~~~~RI~~~~G~~a~~~ 234 (241)
T 3kew_A 212 RRWEKH-KNATRIEYVAGNRAVSE 234 (241)
T ss_dssp EEEEEE-TTEEEEEEEEGGGGC--
T ss_pred EEEecc-CCcEEEEEEECHHHHhc
Confidence 999997 45679999999998764
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=3.3e-47 Score=400.32 Aligned_cols=199 Identities=29% Similarity=0.389 Sum_probs=181.1
Q ss_pred cceeeeEEEEEEEeCCeeeeeccCCCeEEEEecceeEEEecCCeeccceeEeccceeEEEEeEEEE-CCEEEEEEEeecC
Q 002171 541 WFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFVIHIGSLTEG 619 (957)
Q Consensus 541 y~~~~~a~Vl~i~~~~~~~~~~~~~~~~~vvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~~~-~g~i~H~~~~~~~ 619 (957)
|..+++|+|++|. + .+|+||+|+|||||||||+|+|+|. + ++|.+|++. +|.++|++.. .
T Consensus 14 y~~~~~a~V~~~~-~------------~~vvld~T~Fype~GGQ~~D~G~i~---~-~~V~~v~~~~~~~i~H~~~~-~- 74 (216)
T 2e1b_A 14 YLKEAKGRVLEIR-D------------NAILLDQTIFYPTGGGQPHDRGTIN---G-VEVLDVYKDEEGNVWHVVKE-P- 74 (216)
T ss_dssp TCCEEEECBCCCC-S------------SCCCBSCCCSCCCCTTCCCCCEEET---T-EEEEEEECCTTCCCEEEESC-G-
T ss_pred ccceeeEEEEEEe-C------------CEEEEeCCCccCCCCCCCCCEEEEc---c-EEEEEEEECcCCEEEEEEcc-C-
Confidence 6789999999882 1 1599999999999999999999995 2 999999997 8999999863 2
Q ss_pred CcccCCCCEEEEEEchhhhhhHHHHhhHHHHHHHHHHHHhCCc-eecccccccCCceEEEecCCCCCCHHHHHHHHHHHH
Q 002171 620 AGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDH-VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVN 698 (957)
Q Consensus 620 ~~~l~~G~~V~~~VD~erR~~~m~~HTA~HLLs~AL~kvlg~~-~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~N 698 (957)
+.+++|++|.+.|||+||+.+|++|||+|||++||+++||.+ ..+.|++++++++||||+++.+++++ +++||++||
T Consensus 75 -~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~e-l~~IE~~vn 152 (216)
T 2e1b_A 75 -EKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIISLFN 152 (216)
T ss_dssp -GGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHHHHH
T ss_pred -CCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCCCCHH-HHHHHHHHH
Confidence 578999999999999999999999999999999999999983 34579999999999999988889987 999999999
Q ss_pred HHHHcCCCEEEEEcCHHHHHhhcCcccccCCcCCCCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccE
Q 002171 699 EQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAF 778 (957)
Q Consensus 699 eiI~~nlpV~~~~~~~eEA~~~~g~r~~~~e~y~d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~f 778 (957)
++|++|+||++.++++ +|+|+|| +++.++||||||+|||+||.|
T Consensus 153 ~~I~~~~pv~~~~~~~--------------------vRvv~ig----------------~~~~~~CgGtHV~~TgeIg~f 196 (216)
T 2e1b_A 153 KYVDEGGEVKIWWEGD--------------------RRYTQIR----------------DFEVIPCGGTHVKDIKEIGHI 196 (216)
T ss_dssp HHHHHCCBEEEEESSS--------------------CEEEEET----------------TSCEECCCSCCCSBGGGTCCE
T ss_pred HHHhcCCCEEEEEcCC--------------------EEEEEEC----------------CEEEECCCCCCcccHhhCceE
Confidence 9999999999987763 7999998 578999999999999999999
Q ss_pred EEEeeeeccCCeEEEEEE
Q 002171 779 ALLSEEGIAKGIRRITAV 796 (957)
Q Consensus 779 kI~~~~~~~kG~~RI~~v 796 (957)
+|++.+++++|++||+++
T Consensus 197 kI~~~~~~~~g~rRi~~~ 214 (216)
T 2e1b_A 197 KKLKRSSIGRGKQRLEMW 214 (216)
T ss_dssp EEEEEEEEETTEEEEEEE
T ss_pred EEEEEeEEcCCEEEEEEE
Confidence 999999999999999986
No 7
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.96 E-value=5.5e-29 Score=299.79 Aligned_cols=208 Identities=18% Similarity=0.278 Sum_probs=176.8
Q ss_pred hhhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHH
Q 002171 638 RKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEA 717 (957)
Q Consensus 638 R~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eEA 717 (957)
.-..|++|||+|||++|++++||....+.|+++. +++||||++..++|++++.+||++||++|++|+||++.+++++||
T Consensus 66 ~~~~~~~HSa~HlL~~Al~~~~~~~~~~~G~~i~-~gfy~Df~~~~~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA 144 (642)
T 1qf6_A 66 EGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID-NGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEA 144 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCEECCCCEET-TEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcEEEECCccC-CeeEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHH
Confidence 4456999999999999999999875568998775 899999998889999999999999999999999999999999999
Q ss_pred HhhcCc------cccc-CCcCC-CCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeeec---
Q 002171 718 KCINGL------RAVF-GEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGI--- 786 (957)
Q Consensus 718 ~~~~g~------r~~~-~e~y~-d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~~--- 786 (957)
++++.. ..+. ++.++ +.||++++|+ + +++|+||||+|||+||.|+|++.++.
T Consensus 145 ~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~----------------~-~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~ 207 (642)
T 1qf6_A 145 RETFANRGESYKVSILDENIAHDDKPGLYFHEE----------------Y-VDMCRGPHVPNMRFCHHFKLMKTAGAYWR 207 (642)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETT----------------E-EECCSSCCCSBGGGCCSEEEEEEEEEEGG
T ss_pred HHHhhhhCCcchhhhhhcccCCCCceEEEEECC----------------E-EEecCCCccCCCCcceeEEEeeecccccc
Confidence 998532 1122 22222 4799999983 4 79999999999999999999999883
Q ss_pred ----cCCeEEEEEEeChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH--hhhcCCCCcCCCChHHHHHHHHHHHHH
Q 002171 787 ----AKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASL--KSKVDGAAIPAPKKADIRAKIALLQNQ 860 (957)
Q Consensus 787 ----~kG~~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~--~~~~~g~~i~l~~~~~l~~~l~~l~~~ 860 (957)
++.++||++++++ ..++++++++.++++..++|++|+++++.| .+..+|+++|+|.+..+++.|+++
T Consensus 208 g~~~~~~l~r~~g~~~~----~~~~l~~~~~~~eea~~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~--- 280 (642)
T 1qf6_A 208 GDSNNKMLQRIYGTAWA----DKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVF--- 280 (642)
T ss_dssp GCTTSCEEEEEEEEECS----SHHHHHHHHHHHHHHHTTCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHH---
T ss_pred CccCCceeEeeeccccC----chhHHhhhhhhhhccccCCHHHHHHhcCccccccCCCCcEEECCcHHHHHHHHHHH---
Confidence 5678999999998 567788899999999999999999998776 556899999999999999999999
Q ss_pred HHHHHHHHHH
Q 002171 861 VRKAQKKVAE 870 (957)
Q Consensus 861 lk~~~ke~~~ 870 (957)
+++..++.++
T Consensus 281 ~r~~~~~~Gy 290 (642)
T 1qf6_A 281 VRSKLKEYQY 290 (642)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 5555555443
No 8
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.95 E-value=6.6e-29 Score=299.78 Aligned_cols=209 Identities=18% Similarity=0.290 Sum_probs=178.9
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHH
Q 002171 637 RRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAE 716 (957)
Q Consensus 637 rR~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eE 716 (957)
..-..|++|||+|||++|++++||.+..+.|+.+ ++++||||++..++|++++.+||++||++|++|+||++.+++++|
T Consensus 67 ~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~e 145 (645)
T 1nyr_A 67 EEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDE 145 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSCCCSTTHHHHHHHHHHHHHTTCCEEEEECTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 3456799999999999999999998888999887 899999999888999999999999999999999999999999999
Q ss_pred HHhhcCcc----cccCCcCC-CCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeee------
Q 002171 717 AKCINGLR----AVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEG------ 785 (957)
Q Consensus 717 A~~~~g~r----~~~~e~y~-d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~------ 785 (957)
|+++++-. .+...... +.||++++| ++ +++||||||+|||+||.|+|+++++
T Consensus 146 A~~~f~~~~yk~~li~~~~~~~~vrv~~~g----------------~~-~dlC~G~Hv~~Tg~i~~fkl~~~~~a~~~~~ 208 (645)
T 1nyr_A 146 AKELFSNDEYKLELIDAIPEDENVTLYSQG----------------DF-TDLCRGVHVPSTAKIKEFKLLSTAGAYWRGD 208 (645)
T ss_dssp HHHHCSSCHHHHHHHCCCSSSCCCEEEEET----------------TE-EEECCSCCCSCGGGCCEEEEEEEEEEETTSC
T ss_pred HHHHHhhCcchHHHhhcCCCCCeeEEEEEC----------------CE-EEecCCcccCCCCCCceEEEeeeCchHHHHH
Confidence 99987521 11111111 479999998 34 7899999999999999999999974
Q ss_pred -ccCCeEEEEEEeChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH--hhh-cCCCCcCCCChHHHHHHHHHHHHHH
Q 002171 786 -IAKGIRRITAVTTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASL--KSK-VDGAAIPAPKKADIRAKIALLQNQV 861 (957)
Q Consensus 786 -~~kG~~RI~~vtG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~--~~~-~~g~~i~l~~~~~l~~~l~~l~~~l 861 (957)
.++.++||+++++. ...++.++++.++++.++||++|+++++.| .+. .+|++.|+|.+..+++.|+++ +
T Consensus 209 ~~~~~l~ri~g~~~~----~~~~l~~~~~~l~ea~~rdhr~lg~~l~l~~~~~~~~~G~~~~lP~g~~~~~~l~~~---i 281 (645)
T 1nyr_A 209 SNNKMLQRIYGTAFF----DKKELKAHLQMLEERKERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERY---I 281 (645)
T ss_dssp SSSCEEEEEEEEEES----SHHHHHHHHHHHHHHHHTCHHHHHHHTTCEEEETTTEEEEEEECHHHHHHHHHHHHH---H
T ss_pred hHHHHHHHHHHHhcC----CHHHhhhhhhhhhhhhhhhHHHHhhhcceEEecccCCCceeEECCCHHHHHHHHHHH---H
Confidence 36789999999998 455788899999999999999999999886 445 689999999999999999999 6
Q ss_pred HHHHHHHHH
Q 002171 862 RKAQKKVAE 870 (957)
Q Consensus 862 k~~~ke~~~ 870 (957)
++..++.++
T Consensus 282 r~~~~~~Gy 290 (645)
T 1nyr_A 282 VDKEVSMGY 290 (645)
T ss_dssp HHHHHHTTE
T ss_pred HHHHHHcCC
Confidence 665555544
No 9
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.94 E-value=1.2e-26 Score=245.48 Aligned_cols=169 Identities=18% Similarity=0.309 Sum_probs=137.4
Q ss_pred ECCEEEEEEEeecCCcccCCCCEEEEEEchhhh-hhHHHHhhHHHHHHHHHHHHhCCceecccccccCCceEEEecCCCC
Q 002171 606 YGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRR-KLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKP 684 (957)
Q Consensus 606 ~~g~i~H~~~~~~~~~~l~~G~~V~~~VD~erR-~~~m~~HTA~HLLs~AL~kvlg~~~~q~Gs~v~~d~~r~Df~~~~~ 684 (957)
.+|.+++.- .++..|+.|+ .|+++.+ -..|++|||+|||++|++++||......|.+ .++++||||++..+
T Consensus 40 vNg~l~dL~------~~l~~~~~ve-~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~g~~-~~~g~y~d~~~~~~ 111 (224)
T 1tke_A 40 VNGELVDAC------DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPV-IDNGFYYDVDLDRT 111 (224)
T ss_dssp ETTEEEETT------CCBCSCEEEE-EECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCCE-ETTEEEEEEECSSC
T ss_pred ECCEEeccc------eEcCCCCeEE-EEecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEECCc-cCCeEEEEEeCCCC
Confidence 356655531 3566777776 4676655 3679999999999999999998543445644 47999999998889
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhhcCc------ccccCC-c-CCCCEEEEEEcccccccccCCCCccc
Q 002171 685 VDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVFGE-V-YPDPVRVVAIGRKVEDLLADPENKEW 756 (957)
Q Consensus 685 lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eEA~~~~g~------r~~~~e-~-y~d~VRvV~Ig~~~~~~l~~~~~~~v 756 (957)
+|++++.+||++||++|++|+||++.+++++||++++.. ..++++ . +.+.||++++|+
T Consensus 112 ~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~-------------- 177 (224)
T 1tke_A 112 LTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEE-------------- 177 (224)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETT--------------
T ss_pred CCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeCC--------------
Confidence 999999999999999999999999999999999997642 223332 2 456899999983
Q ss_pred cceeeeeccCcccccccccccEEEEeeeec-------cCCeEEEEEEeCh
Q 002171 757 LSISAELCGGTHLSNTREAEAFALLSEEGI-------AKGIRRITAVTTG 799 (957)
Q Consensus 757 ~~~~~elCgGTHV~nTgeIg~fkI~~~~~~-------~kG~~RI~~vtG~ 799 (957)
+ +++||||||+|||+||.|+|+++++. +++++|||+++++
T Consensus 178 --~-~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a~~ 224 (224)
T 1tke_A 178 --Y-VDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224 (224)
T ss_dssp --E-EEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEECC
T ss_pred --E-EEECCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEeccC
Confidence 3 79999999999999999999998774 6789999999984
No 10
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.93 E-value=2.2e-25 Score=222.91 Aligned_cols=144 Identities=21% Similarity=0.201 Sum_probs=118.9
Q ss_pred hHHHHhhHHHHHHHHHHHHhCCceecc-cccccCCceEEEecCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHH
Q 002171 640 LIAPNHTCTHMLNFALREVLGDHVDQK-GSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAK 718 (957)
Q Consensus 640 ~~m~~HTA~HLLs~AL~kvlg~~~~q~-Gs~v~~d~~r~Df~~~~~lt~e~L~~IE~~~NeiI~~nlpV~~~~~~~eEA~ 718 (957)
..|++|||+|||++|++++||.+..+. |.++.++++|+||++..++|++++.+||++||++|++|+||++.+++++||+
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA~ 83 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAE 83 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 358999999999999999998544334 4466666888898877789999999999999999999999999999999999
Q ss_pred hhcCcccccCCcCC---CCEEEEEEcccccccccCCCCccccceeeeeccCcccccccccccEEEEeeee-ccCCeEEEE
Q 002171 719 CINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEG-IAKGIRRIT 794 (957)
Q Consensus 719 ~~~g~r~~~~e~y~---d~VRvV~Ig~~~~~~l~~~~~~~v~~~~~elCgGTHV~nTgeIg~fkI~~~~~-~~kG~~RI~ 794 (957)
++++...+....+| +.||+|+|| ++++++||||||+|||+||.|+|+++++ .+++..||+
T Consensus 84 ~~f~~~~~~~~~~~~~~~~vrv~~ig----------------~~~~~~C~GtHv~~Tg~I~~fki~~~~~~~~~~~l~v~ 147 (157)
T 1v4p_A 84 KMFGEDMYDLFPVPEDVRILKVVVIE----------------DWNVNACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEIH 147 (157)
T ss_dssp HHHGGGGSCSSCCCTTCCEEEEEEET----------------TTEEEECCSCCCSBGGGTCCEEEEEEEEETTTTEEEEE
T ss_pred HhhCccccccccCCCCCCeEEEEEEC----------------CeeEeCCCCCccCChhhcceEEEEEEEecCCCcEEEEE
Confidence 98765322111223 469999998 4789999999999999999999999886 345667999
Q ss_pred EEeCh
Q 002171 795 AVTTG 799 (957)
Q Consensus 795 ~vtG~ 799 (957)
+..++
T Consensus 148 ~~v~~ 152 (157)
T 1v4p_A 148 FELLE 152 (157)
T ss_dssp EEEC-
T ss_pred EEEee
Confidence 98875
No 11
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=98.76 E-value=7.4e-08 Score=97.09 Aligned_cols=127 Identities=14% Similarity=0.049 Sum_probs=99.7
Q ss_pred eChHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHhhhcCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002171 797 TTGLAYKAFEAACSLEKEVDDASKIEGSLLEKTVASLKSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAEENLQKA 876 (957)
Q Consensus 797 tG~~A~~~~~~~~~~~~~l~e~~~~~~~~i~k~l~~~~~~~~g~~i~l~~~~~l~~~l~~l~~~lk~~~ke~~~l~~k~a 876 (957)
.|.+|++++.+.++.+++++..++++ ..++.++++++++++++++|++..++.+++
T Consensus 1 ~G~~A~~~~~~~~~~l~~~a~~Lk~~------------------------~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 1 MGEAAIEAVEEMERLLREASSILRVE------------------------PAKLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp -CGGGTHHHHHHHHHHHHHHHTTTCC------------------------TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCC------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999988888888877753 247889999999999999999999999999
Q ss_pred HHHHHHHHHHhc-cCCCcEEEEEcccCCCHHHHHHHHHHHHccCCEEEEEEeeCCCCcE-EEEEEecccccccccccccc
Q 002171 877 VKVATETAEAAA-SNGKPFCISRVEVGLDAAAVREAVLKVIEQKVACRSWSSVPMKPRI-RLSYVQVYQRNQTRANSWRC 954 (957)
Q Consensus 877 ~~~a~~l~~~~~-~~~~~~iv~~~~~~~d~~~Lr~la~~l~~~~~~v~ll~~~~~~~kv-~~~~v~~~~~~~~~Ag~~~k 954 (957)
...+.++..++. ..+.++++..+ +.|++.||.+++.++.. ..+++|.+.. ++ + ++|.++++ +++|++|++
T Consensus 57 ~~~~~~l~~~~~~i~g~~~~~~~~--~~d~~~lr~~~~~l~~~-~~vv~l~~~~-~~-~~~v~~~~~~---~~~a~~lvk 128 (171)
T 2zvf_A 57 DLWADILMERAEEFDSMKVVAEVV--DADMQALQKLAERLAEK-GAVGCLMAKG-EG-KVFVVTFSGQ---KYDARELLR 128 (171)
T ss_dssp HHHHHHHHTTCEESSSCEEEEEEC--SCCHHHHHHHHHHHHHT-TEEEEEEEEC-SS-SEEEEEEESS---SSCHHHHHH
T ss_pred HHHHHHHHhhcEEeCCEEEEEEEe--CCCHHHHHHHHHHHhcC-CCEEEEEEcC-CC-eEEEEEECCC---CCCHHHHHH
Confidence 988888876554 35677777666 68999999999999943 4444454333 45 6 77777665 699999987
Q ss_pred c
Q 002171 955 Q 955 (957)
Q Consensus 955 ~ 955 (957)
+
T Consensus 129 ~ 129 (171)
T 2zvf_A 129 E 129 (171)
T ss_dssp H
T ss_pred H
Confidence 5
No 12
>3g98_A Alanyl-tRNA synthetase; alpha and beta fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 1.85A {Aquifex aeolicus}
Probab=97.04 E-value=0.00086 Score=62.81 Aligned_cols=65 Identities=11% Similarity=-0.027 Sum_probs=51.3
Q ss_pred cCCCcEEEEEcccCCCHHHHHHHHHHHH-ccCCEEEEEEeeCCCCcE-EEEEEeccccccccccccccc
Q 002171 889 SNGKPFCISRVEVGLDAAAVREAVLKVI-EQKVACRSWSSVPMKPRI-RLSYVQVYQRNQTRANSWRCQ 955 (957)
Q Consensus 889 ~~~~~~iv~~~~~~~d~~~Lr~la~~l~-~~~~~v~ll~~~~~~~kv-~~~~v~~~~~~~~~Ag~~~k~ 955 (957)
..+.++++..++ +.|++.||++++.++ +.+..|++|++. .++|+ ++|.++++..+.++|++|+++
T Consensus 6 i~g~~~~~~~~~-~~d~~~Lr~~~~~l~~~~~~~vvvl~~~-~~~kv~~v~~v~~~~~~~~~A~~lvk~ 72 (111)
T 3g98_A 6 VGDFTLHYGVFE-EVEPEELRNLADMLRQRTKKDVVFIASR-KGDKINFVIGVSKEISDKVNAKEVIRE 72 (111)
T ss_dssp ETTEEEEEEEEE-SCCHHHHHHHHHHHTTSSSSEEEEEEEE-ETTEEEEEEEECGGGTTTSCHHHHHHH
T ss_pred ECCEEEEEEEeC-CCCHHHHHHHHHHHHhhcCCcEEEEEEe-cCCcEEEEEEECHHHhccCCHHHHHHH
Confidence 356778888886 899999999999999 555677777653 45798 888898884344999999985
No 13
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=94.52 E-value=0.23 Score=52.75 Aligned_cols=177 Identities=20% Similarity=0.276 Sum_probs=102.1
Q ss_pred cCCChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccccccccccc-ccCCCCCCCcccccccccccccccccC-C
Q 002171 56 VEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRAG-G 133 (957)
Q Consensus 56 ~~~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~-flG~~~p~~~~~~~~r~~~~QkCiR~g-g 133 (957)
..|+-.+|--+--+|+.++|..++.++.+= +.|| .|-|. ||..--|. | -+++-+|+|-|.. |
T Consensus 23 ~~~~fQ~iIl~Lq~fWa~qGC~i~QPyD~E---------vGAG--T~hPaTfLRalGpe-P----w~~AYVqPsRRP~DG 86 (311)
T 3rf1_A 23 NAMTFSQMILNLQNYWQEQGCAIMQPYDMP---------AGAG--TFHPATFLRSLGKK-P----WAAAYVAPSRRPTDG 86 (311)
T ss_dssp GSCCHHHHHHHHHHHHHTTTCEECCCCSSC---------CSSG--GGSHHHHTTTSSSS-C----EEEEEEEEEECGGGC
T ss_pred CcCcHHHHHHHHHHHHHHCCCEEECCcccc---------ccCC--CCCHHHHHHhcCCC-c----ceeeeeccCCCCCCC
Confidence 458999999999999999999999877642 2344 67785 55333331 1 3789999999972 2
Q ss_pred CCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcC
Q 002171 134 KHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFL 213 (957)
Q Consensus 134 khnDl~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~~ 213 (957)
+.- +|.-+ ..||.=|..+=-=|-.+ ..+.=.+-| +.|||||..
T Consensus 87 RYG--eNPNR-Lq~yyQfQVilKPsP~n-----iQeLYL~SL-~alGId~~~---------------------------- 129 (311)
T 3rf1_A 87 RYG--ENPNR-LGAYYQFQVLIKPSPDN-----IQELYLKSL-ENLGFDLKS---------------------------- 129 (311)
T ss_dssp CTT--CCSSC-CSEEEEEEEEEESCCTT-----HHHHHHHHH-HHTTCCGGG----------------------------
T ss_pred CcC--CCchh-hhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCccc----------------------------
Confidence 222 23333 24555455432222222 111111111 246666653
Q ss_pred CCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCccccC
Q 002171 214 PASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTG 293 (957)
Q Consensus 214 ~~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDtG 293 (957)
|=+|| .+|| |+-=.-|--|-==|+-.| | +||=- |+=|.+ .-| .++..-.+.-=
T Consensus 130 ---HDIRF-VEDn-WEsPTLGAWGLGWEVWld---G--------------MEVTQ--FTYFQQ-vGG--i~c~pv~~EIT 182 (311)
T 3rf1_A 130 ---HDIRF-VEDN-WESPSLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG--IAVDLVSAEIT 182 (311)
T ss_dssp ---SCEEE-EECC-EEETTTTEEEEEEEEEET---T--------------EEEEE--EEEEEE-ETT--EECSSCCEEEE
T ss_pred ---cCeeE-eccC-CCCCcccccccceEEEEc---C--------------eeEee--eeeeee-eCC--ccccccceeee
Confidence 22344 2555 432112444544555544 1 55542 332222 223 23445567778
Q ss_pred chHHHHHHHHhCCCCCccc
Q 002171 294 LGFERLTSILQNKMSNYDT 312 (957)
Q Consensus 294 mGlERl~~vlq~~~s~ydt 312 (957)
+||||||+.|||+.|+||.
T Consensus 183 YGLERlamylQ~vd~vyDl 201 (311)
T 3rf1_A 183 YGLERIAMYLQNVDNVYDI 201 (311)
T ss_dssp EEHHHHHHHHTTCSSGGGS
T ss_pred hhHHHHHHHHhCCCeeeec
Confidence 9999999999999999996
No 14
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=92.12 E-value=0.3 Score=53.13 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccc-----cccccc----cccccCCCCCCC-----ccccccccccc
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFAN-----AGMNQY----KPIFLGTADPNT-----QLSKLTRACNT 125 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~n-----AGm~~f----k~~flG~~~p~~-----~~~~~~r~~~~ 125 (957)
-+.|.+.+-+||.++|...|..--+.+.+| ++-.. |=|.++ ++++|-+. |.- -.++..|+-..
T Consensus 18 rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~--~~~~~~~~e~a~~f~~~~~~~~~~L~~S-pe~~~~~l~~~g~~rvf~i 94 (294)
T 1nnh_A 18 QTKILEYMTDFFVKEGFKWLLPVIISPITD--PLWPDPAGEGMEPAEVEIYGVKMRLTHS-MILHKQLAIAMGLKKIFVL 94 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCCEESCCC--CCCSCTTCCCCCCCEEEETTEEEEECSC-SHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEccc--hhccCCCCCcceeEEEEcCCCCEEeccC-hHHHHHHHhhcCccceEEE
Confidence 456788899999999999887544444311 11111 112111 12344221 100 01124688889
Q ss_pred ccccccCCCCCCCCCCCCCCCcccccccccc-cccccccHHHHHHHHHHHchhcc
Q 002171 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLTKVY 179 (957)
Q Consensus 126 QkCiR~ggkhnDl~~VG~~~rH~TfFeMlGn-~sfgdYfK~eai~~awe~lt~~l 179 (957)
-+|.|. +=+.. .++||..=|.|++- .+|.|| +|.+..+.+|+...+
T Consensus 95 g~~FR~-----E~pq~-~~~RH~~EFtqle~e~~~~~~--~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 95 SPNIRL-----ESRQK-DDGRHAYEFTQLDFEVERAKM--EDIMRLIERLVYGLF 141 (294)
T ss_dssp EEEECC-----CCGGG-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHH
T ss_pred EccEeC-----CCCCC-CCCccccceeEEEEEecCCCH--HHHHHHHHHHHHHHH
Confidence 999995 42113 25799988999864 444564 688888888877653
No 15
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=83.89 E-value=0.37 Score=50.92 Aligned_cols=172 Identities=19% Similarity=0.262 Sum_probs=100.0
Q ss_pred CChHHHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccccccccccc-cc---CCCCCCCcccccccccccccccccC-
Q 002171 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FL---GTADPNTQLSKLTRACNTQKCIRAG- 132 (957)
Q Consensus 58 ~~~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~~-fl---G~~~p~~~~~~~~r~~~~QkCiR~g- 132 (957)
|--.+|--+--+|+.++|..++.++.+= +.| -.|-|. || |.++ -+++-+|+|.|..
T Consensus 13 ~~fQ~iIl~Lq~fWa~~GC~i~QpyD~E---------vGA--GT~~PaTfLRaLGpep--------w~~AYVqPsRRP~D 73 (298)
T 1j5w_A 13 MYLQDVIMKLNDFWASKGCLLEQPYDME---------VGA--GTFHPATFFGSLRKGP--------WKVAYVQPSRRPTD 73 (298)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCSSC---------CSS--GGGSHHHHTGGGCSSC--------EEEEEEEEEECCC-
T ss_pred HHHHHHHHHHHHHHHHCCCEEEcCcccc---------ccc--ccCCHHHHHHhcCCCc--------ceeeeeccCCCCCC
Confidence 5678899999999999999998877652 234 467774 33 5432 3689999999972
Q ss_pred CCCCCCCCCCCCCCcccccccccccccccccHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc
Q 002171 133 GKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF 212 (957)
Q Consensus 133 gkhnDl~~VG~~~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~~ 212 (957)
|+.- +|.-+ ..||.=|..+=-=|-.+ ..+.=.+-| +.|||||..
T Consensus 74 GRYG--eNPNR-Lq~y~QfQVilKPsP~n-----iQeLYL~SL-~alGid~~~--------------------------- 117 (298)
T 1j5w_A 74 GRYG--ENPNR-LQRYFQYQVIIKPSPEN-----SQELYLESL-EYLGINLKE--------------------------- 117 (298)
T ss_dssp ------CCTTC-CSEEEEEEEEEESCCSS-----HHHHHHHHH-HHTTCCTTT---------------------------
T ss_pred CCcC--CCchh-hhhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc---------------------------
Confidence 1111 23333 34555555543333332 111111111 246666654
Q ss_pred CCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCCeeEEeeecccccccCCCCccccCCCCcccc
Q 002171 213 LPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDT 292 (957)
Q Consensus 213 ~~~~~i~~~~~~dNfW~mG~~GpcGpcsEi~yd~~~~~~~~~~~~~~~~~~lEiwNlVFmq~~r~~~g~l~~L~~k~iDt 292 (957)
|=+|| .+|| |+-=.-|.-|-==|+-.| | +||=-. +=|.+ .-| .++..-.+.-
T Consensus 118 ----HDIRF-VEDn-WEsPTLGAwGLGWEVWld---G--------------MEITQF--TYFQQ-vGG--i~c~pv~~EI 169 (298)
T 1j5w_A 118 ----HDIRF-VEDN-WESPTLGAWGVGWEVWLD---G--------------MEITQF--TYFQQ-IGG--ISLKDIPLEI 169 (298)
T ss_dssp ----SCEEE-EEEC-CEEGGGTEEEEEEEEEET---T--------------EEEEEE--EEEEE-BTT--BCCSSCCEEE
T ss_pred ----CCcee-eccC-CCCCccccccccceeeEc---c--------------eeeehh--hhhhh-cCC--cccCccceee
Confidence 22444 2566 432112555555666654 1 666432 22222 223 3355557777
Q ss_pred CchHHHHHHHHhCCCCCccc
Q 002171 293 GLGFERLTSILQNKMSNYDT 312 (957)
Q Consensus 293 GmGlERl~~vlq~~~s~ydt 312 (957)
=+||||||+.|||+.|+||.
T Consensus 170 TYGLERiamylQ~vd~vydl 189 (298)
T 1j5w_A 170 TYGLERIAMYLQGVDNVYEV 189 (298)
T ss_dssp EEEHHHHHHHHHTCSSGGGC
T ss_pred cccHHHHHHHHhCCCceecc
Confidence 89999999999999999996
No 16
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=70.83 E-value=8 Score=44.12 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccccc--------cccc--cccc-CCCCC------------CCcc
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGM--------NQYK--PIFL-GTADP------------NTQL 116 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm--------~~fk--~~fl-G~~~p------------~~~~ 116 (957)
-..|.+.++++|.+.|++.|-.-.+++.. +|..+|. ..|. .++| ....+ ..++
T Consensus 175 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~----l~~~sG~~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~L 250 (425)
T 2dq3_A 175 ERALINFMLDLHTKKGYKEICPPHLVKPE----ILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEENL 250 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHH----HHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHH----HHHhcCCCCcChhhheEecCCeEEEcCCCcHHHHHHHHhhccccccC
Confidence 34677788888999999999776666521 2222222 1111 1222 11111 0111
Q ss_pred cccccccccccccccCCCCCCCCCCCCCC----Ccccccccccccccccc-----cHHHHHHHHHHHchhccCCC
Q 002171 117 SKLTRACNTQKCIRAGGKHNDLDDVGKDT----YHHTFFEMLGNWSFGDY-----FKNEAIEWAWELLTKVYRLP 182 (957)
Q Consensus 117 ~~~~r~~~~QkCiR~ggkhnDl~~VG~~~----rH~TfFeMlGn~sfgdY-----fK~eai~~awe~lt~~l~l~ 182 (957)
.-|++-..+|.|- ....-|++. |=|. |+|..-++|+.= .-+|.+..+.++|. .||||
T Consensus 251 --Plrl~~~g~~FR~-----E~~~~Gr~~~Gl~R~re-F~q~E~~~f~~pe~s~~~~~e~i~~~~~il~-~LGL~ 316 (425)
T 2dq3_A 251 --PIYLTAYTPCYRR-----EAGAYGKDIRGIIRQHQ-FDKVELVKIVHPDTSYDELEKLVKDAEEVLQ-LLGLP 316 (425)
T ss_dssp --CEEEEEEEEEECC-----CCSCCSSSCSSSSSCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-HHTCC
T ss_pred --CeEEEEecCEecC-----CCCcccccccCcccccc-eEEeeEEEECCHHHHHHHHHHHHHHHHHHHH-HCCCc
Confidence 2478888999994 443334331 3333 566677888731 23678999999996 49998
No 17
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=65.07 E-value=3.4 Score=38.04 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
-|++-++-.-++|.++||+||+|+||.|++
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEe
Confidence 467777888899999999999999999975
No 18
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=64.06 E-value=41 Score=36.15 Aligned_cols=110 Identities=16% Similarity=0.177 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccc------ccccc-----ccccCCCC-CC---------Ccccc
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG------MNQYK-----PIFLGTAD-PN---------TQLSK 118 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAG------m~~fk-----~~flG~~~-p~---------~~~~~ 118 (957)
...+.+...++|.+.|...+-..++.+.+ +|..+| |..+. .+.|-..- |. .....
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~----l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~ 148 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKS----ALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDK 148 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHH----HHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHH----HHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCC
Confidence 56789999999999999999999988622 122222 32221 12222100 00 00001
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCccccccccccccccc---ccHHHHHHHHHHHchhccCCCC
Q 002171 119 LTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD---YFKNEAIEWAWELLTKVYRLPA 183 (957)
Q Consensus 119 ~~r~~~~QkCiR~ggkhnDl~~VG~~~rH~TfFeMlGn~sfgd---YfK~eai~~awe~lt~~l~l~~ 183 (957)
.-|+....+|.|- |-. | ..|.--|.|++-+.+|. .-=.|.+..+.++|. .||++.
T Consensus 149 PlrlfeiG~vFR~-----E~~--~--~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~-~LGl~~ 206 (288)
T 3dsq_A 149 PIRIFEIGTCYRK-----ESQ--G--AQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLE-AAGIRE 206 (288)
T ss_dssp CEEEEEEEEEECS-----CCS--S--SCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHH-HHTCCC
T ss_pred CEEEEEEeeEEec-----CCC--C--CCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHH-HcCCCC
Confidence 1477888999994 333 3 23555789999888884 112356777777766 479853
No 19
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=59.54 E-value=5.3 Score=38.15 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-.+-.-++|.+.|||||+|+||.|++
T Consensus 94 n~~~s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 94 PEKVTSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 56666777889999999999999999975
No 20
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=59.20 E-value=5.1 Score=36.97 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
-|++-.+---++|.+.||+|++|+||.|+.
T Consensus 71 ~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 71 QNRSYSKLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 355566667789999999999999999975
No 21
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=58.20 E-value=5.4 Score=37.13 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
+++-.+---++|.+.||+|++|+||.|+.
T Consensus 73 n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 73 NRSHSAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 44555666788999999999999999975
No 22
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=56.87 E-value=6.5 Score=35.93 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
-|++-++-..++|.+.||+||+|+||++++
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 72 EPEKVTSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 477788888899999999999999999975
No 23
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=55.36 E-value=37 Score=39.70 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=35.2
Q ss_pred cccc-cccccccCCCCCCCCCCC--CCCCcccccccccccccccc-----cHHHHH-HHHHHHchhccCCC
Q 002171 121 RACN-TQKCIRAGGKHNDLDDVG--KDTYHHTFFEMLGNWSFGDY-----FKNEAI-EWAWELLTKVYRLP 182 (957)
Q Consensus 121 r~~~-~QkCiR~ggkhnDl~~VG--~~~rH~TfFeMlGn~sfgdY-----fK~eai-~~awe~lt~~l~l~ 182 (957)
|++. .++|.|- . .| +-....-=|+|.+-++|++- +=++.+ .++++|+. .||||
T Consensus 346 rl~q~ig~~FR~-----E---pgs~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~-~LGLp 407 (522)
T 2cja_A 346 KVFDRSGTSHRY-----E---SGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFND-ILDIE 407 (522)
T ss_dssp EEEECSSEEECC-----C---SSSCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHH-TSCCC
T ss_pred eEEEEcCceEeC-----C---CCCCCCCeEeEEEEEeeEEEEeChHHHHHHHHHHHHHHHHHHHH-HcCCC
Confidence 6777 8899993 4 45 21122233788888999841 224457 88888876 59999
No 24
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=54.77 E-value=6.5 Score=37.51 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-.+-.-++|.+.||+||+|+||.|++
T Consensus 94 n~~~s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 94 PKMMTPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 55666667789999999999999999975
No 25
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=52.74 E-value=6.8 Score=37.51 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-.+-.-++|.+.||+||+|+||.|++
T Consensus 94 n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 94 NPSISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp CHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred CchHHHHHHHHHHHhcccCccEEEEEecc
Confidence 45556667789999999999999999975
No 26
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=51.18 E-value=8.9 Score=35.84 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
-|++-++-..++|.+.||+||+++||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 72 NNSLLADKITKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp THHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 477888888999999999999999999975
No 27
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=50.61 E-value=8.5 Score=35.07 Aligned_cols=29 Identities=14% Similarity=0.401 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-++-..++|.+.||+||+++||++.+
T Consensus 72 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 72 NRDHSAKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 66778888899999999999999999976
No 28
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=50.55 E-value=8.5 Score=35.24 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-++-..++|.+.||+||+|+||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 73 TQEVSELVCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 77778888899999999999999999976
No 29
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=50.48 E-value=15 Score=42.69 Aligned_cols=99 Identities=18% Similarity=0.314 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccc------cccccCCCCCCC--c--cccccccccccccccc
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPNT--Q--LSKLTRACNTQKCIRA 131 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~f------k~~flG~~~p~~--~--~~~~~r~~~~QkCiR~ 131 (957)
.|-+.+-+||.++|...|..--+.+. + +.+|-..| ++++|-+++--+ - .+.+.|+-..-+|.|.
T Consensus 183 ~i~~~ir~~~~~~gF~EV~TPil~~~-~-----~~~ga~~f~~~~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~ 256 (487)
T 1eov_A 183 GVCELFREYLATKKFTEVHTPKLLGA-P-----SEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRA 256 (487)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESS-C-----SSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEEEe-c-----CCCCcccceeccCCccEEcccChHHHHHHHHhcCCCceEEEeccEec
Confidence 45566788999999988875545442 1 12222222 234443322000 0 0235677788899996
Q ss_pred CCCCCCCCCCCCCCCcccccccccc-cccc-cccHHHHHHHHHHHch
Q 002171 132 GGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELLT 176 (957)
Q Consensus 132 ggkhnDl~~VG~~~rH~TfFeMlGn-~sfg-dYfK~eai~~awe~lt 176 (957)
|+. .+.||..=|.|++- .||| || +|.++.+-+++.
T Consensus 257 -------E~~-~~~Rh~pEFt~le~e~af~~~~--~dlm~l~E~ll~ 293 (487)
T 1eov_A 257 -------ENS-NTHRHMTEFTGLDMEMAFEEHY--HEVLDTLSELFV 293 (487)
T ss_dssp -------CCC-CCTTCCSEEEEEEEEEECSSCT--HHHHHHHHHHHH
T ss_pred -------CCC-CCCccchhhhhhhhhhhhhcCH--HHHHHHHHHHHH
Confidence 333 36899999999987 6898 57 566666655544
No 30
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=49.16 E-value=22 Score=39.38 Aligned_cols=104 Identities=15% Similarity=0.250 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccccc------------cccCCCCC---C-Ccccccccccc
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP------------IFLGTADP---N-TQLSKLTRACN 124 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk~------------~flG~~~p---~-~~~~~~~r~~~ 124 (957)
++|-+.+-+||.++|...|..=-|.+.. +. .|+..+|+- .||-+.+- . --.+.+.|+-.
T Consensus 40 s~i~~~iR~ff~~~gF~EVeTPiL~~~~-~~----~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~rvyq 114 (345)
T 3a5y_A 40 AAIMAEIRRFFADRGVLEVETPCMSQAT-VT----DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQ 114 (345)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSC-CC----CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEecC-CC----CCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCcEEE
Confidence 3566777889999999988754444422 11 223334432 33322210 0 00123567888
Q ss_pred cccccccCCCCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHchhccC
Q 002171 125 TQKCIRAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTKVYR 180 (957)
Q Consensus 125 ~QkCiR~ggkhnDl~~VG~~~rH~TfFeMlG-n~sfgdYfK~eai~~awe~lt~~l~ 180 (957)
.-+|.|. |+. |.||+.=|.||- -.+|.|| ++.++.+=+++..+++
T Consensus 115 Ig~~FR~-------E~~--~~rH~pEFt~lE~e~af~d~--~d~m~~~E~li~~v~~ 160 (345)
T 3a5y_A 115 LCRSFRN-------EEM--GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLD 160 (345)
T ss_dssp EEEEECC-------CCC--BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHHC
T ss_pred EEcceeC-------CCC--cccccchhheeeeeeeCCCH--HHHHHHHHHHHHHHHc
Confidence 8999996 334 789999999995 4577776 4566666666655554
No 31
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=48.90 E-value=9.4 Score=34.95 Aligned_cols=29 Identities=28% Similarity=0.613 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-++-..++|.+.||+||+++||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 73 NKSYTKLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 66778888889999999999999999976
No 32
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=48.83 E-value=9.3 Score=35.28 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-++-..++|.+.||+||+++||.+.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 73 NIRHTQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 67778888899999999999999999976
No 33
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=46.66 E-value=20 Score=24.05 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 002171 847 KADIRAKIALLQNQVRKAQKKV 868 (957)
Q Consensus 847 ~~~l~~~l~~l~~~lk~~~ke~ 868 (957)
.++++..++.+++.++++.|++
T Consensus 3 adelykeledlqerlrklrkkl 24 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888999988888887654
No 34
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=40.85 E-value=16 Score=29.11 Aligned_cols=30 Identities=10% Similarity=0.023 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 qk~~l~~~i~~~l~~~lg~~~~~v~V~i~e 44 (61)
T 2opa_A 15 QKRNLVEKVTEAVKETTGASEEKIVVFIEE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 366667777888999999999999999875
No 35
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=40.13 E-value=16 Score=29.06 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e 44 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLERVRVLITE 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 366677778888999999999999999875
No 36
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=38.75 E-value=20 Score=28.74 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-++-.-+.|.+.||+|++++||.+.+
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 55566777788889999999999999875
No 37
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=38.32 E-value=5.5 Score=45.91 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=37.6
Q ss_pred cccchhHHHHHHH--hhhcCCCCcCCCChHHHHHHHHHHHHHHHHHH-HHHH
Q 002171 821 IEGSLLEKTVASL--KSKVDGAAIPAPKKADIRAKIALLQNQVRKAQ-KKVA 869 (957)
Q Consensus 821 ~~~~~i~k~l~~~--~~~~~g~~i~l~~~~~l~~~l~~l~~~lk~~~-ke~~ 869 (957)
+||++|+++++.| .+..+|+.+|+|.+..+.+.|+++ +++.. ++.+
T Consensus 35 rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~---~~~~~~~~~G 83 (460)
T 3uh0_A 35 TMTSMVSQRQDLFMTDPLSPGSMFFLPNGAKIFNKLIEF---MKLQQKFKFG 83 (460)
T ss_dssp HHHHHHHHHHTCEECCTTSTTCCEECHHHHHHHHHHHHH---HHHHHHHTSC
T ss_pred CCHHHHHHhCCCceeccCCCCcEEECccHHHHHHHHHHH---HHHHHHHhcC
Confidence 5799999999987 445799999999999999999999 55554 4444
No 38
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=37.58 E-value=17 Score=34.79 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEECCCCcC-----CCCCcHHHHHHHHhcCCC
Q 002171 163 FKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKA-----GLAPDNEARDIWLKFLPA 215 (957)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~-----~~~~D~e~~~iW~~~~~~ 215 (957)
-|++-++-..+.|.+.||+|++++||++.+-.... .+.+|....+.|.+.+|+
T Consensus 77 qk~~l~~~l~~~l~~~lgi~~~~v~V~i~E~~~~~wg~gG~~~~~~g~e~~W~~~~~~ 134 (148)
T 3n4h_A 77 QKEELLLRLTQEIALILGIPNEEVWVYITEIPGSNMTEYGRLLMEPGEEEKWFNSLPE 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGCCCSSCC----------------
T ss_pred HHHHHHHHHHHHHHHHhCcCcCcEEEEEEEcCHHHeeECCEECCCCcchHHHHHhCcH
Confidence 37778888889999999999999999997632211 233444445566555443
No 39
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=37.32 E-value=90 Score=36.34 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCC
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSP 83 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~s 83 (957)
...+++.+-++|.+-|...+...|
T Consensus 227 l~~v~~~Ir~if~~mGF~Ev~t~~ 250 (508)
T 3l4g_A 227 LLKVRSQFRQIFLEMGFTEMPTDN 250 (508)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCC
T ss_pred HHHHHHHHHHHHHHCcCeEeccCC
Confidence 678999999999999999877644
No 40
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=37.26 E-value=30 Score=27.99 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-++-.-+.+.+.||+|++.++|.+.+
T Consensus 15 K~~L~~~it~~~~~~lg~~~~~v~V~i~E 43 (62)
T 3m20_A 15 KREFVERLTSVAAEIYGMDRSAITILIHE 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 66677777788888999999999999875
No 41
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=35.92 E-value=44 Score=28.20 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHchhccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHh
Q 002171 163 FKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 211 (957)
Q Consensus 163 fK~eai~~awe~lt~~l~l~~~rl~vT~~~~~~~~~~~~D~e~~~iW~~ 211 (957)
-|++-++-.-+.|.+.||+|++++||.+.+ .++++=+. +|..
T Consensus 16 qk~~L~~~l~~~l~~~lgip~~~v~V~i~e------~~~~~w~~-v~~~ 57 (76)
T 1gyx_A 16 QKAALAADITDVIIRHLNSKDSSISIALQQ------IQPESWQA-IWDA 57 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE------CCGGGHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCceEEEEEEE------eChHHEEE-EEch
Confidence 366667777788889999999999999976 34455555 6643
No 42
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=35.12 E-value=62 Score=34.55 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccc------cccc-cccccCCCC-CC---------Ccccccccc
Q 002171 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG------MNQY-KPIFLGTAD-PN---------TQLSKLTRA 122 (957)
Q Consensus 60 ~~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAG------m~~f-k~~flG~~~-p~---------~~~~~~~r~ 122 (957)
...+.+.+.+||.+.|...|-..++++.+.-..++...+ |..| ..++|-..- |. +-....-|+
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rl 158 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKI 158 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEE
Confidence 478999999999999999999999987421000111111 1111 112222100 00 000112577
Q ss_pred cccccccccCCCCCCCCCCCCCCCccccccccccccccc-ccHHHHHHHHHHHchhccCCC
Q 002171 123 CNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGD-YFKNEAIEWAWELLTKVYRLP 182 (957)
Q Consensus 123 ~~~QkCiR~ggkhnDl~~VG~~~rH~TfFeMlGn~sfgd-YfK~eai~~awe~lt~~l~l~ 182 (957)
....+|.|. + +.+.+|..-|.|++-..+|. .==.|+...+.++|. .||++
T Consensus 159 feiG~vFR~-----E----~~~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~-~lGl~ 209 (290)
T 3qtc_A 159 FEIGPCYRK-----E----SDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLN-HLGID 209 (290)
T ss_dssp EEEEEEECC-----C----SCSSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHH-HHTCC
T ss_pred EEEcCEEec-----C----CCCCcCcchheEEEEEEEcCChHHHHHHHHHHHHHH-HcCCC
Confidence 788899995 2 22456878888887666652 111356666666665 47884
No 43
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=32.25 E-value=30 Score=28.39 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 19 K~~l~~~lt~~l~~~lg~p~~~v~V~i~e 47 (67)
T 3m21_A 19 KQQLIEGVSDLMVKVLNKNKASIVVIIDE 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 66677777888889999999999999875
No 44
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=29.95 E-value=1.1e+02 Score=35.09 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccc------ccccccc-----ccCCCC-CC-------Ccc--ccc
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAG------MNQYKPI-----FLGTAD-PN-------TQL--SKL 119 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAG------m~~fk~~-----flG~~~-p~-------~~~--~~~ 119 (957)
..|.+.+.+-|++.|+..|. .|++-.-+ ++-..+| |..|.+- .|...- |+ +.. ...
T Consensus 47 ~~i~~~i~~~~~~~Gy~eI~-tP~lE~~e--l~~~~~G~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~P 123 (456)
T 3lc0_A 47 RHLFDVFHATAKTFGFEEYD-APVLESEE--LYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLP 123 (456)
T ss_dssp HHHHHHHHHHHHHTTCEECC-CCSEEEGG--GGCCCSCCHHHHTCEEEECSSSCEEEECSCSHHHHHHHHHHSCTTCCSS
T ss_pred HHHHHHHHHHHHHCCCEEEE-CCcEeehh--hhccccccchhhceEEEEcCCCCEEecCCcCHHHHHHHHHhcCcccCCC
Confidence 35778888999999999994 45554222 2222233 6666431 111100 00 000 002
Q ss_pred ccccccccccccCCCCCCCCCCCCC-CCcccccccccccccccccHHHHHHHHHHHchhccCCCCCce
Q 002171 120 TRACNTQKCIRAGGKHNDLDDVGKD-TYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRL 186 (957)
Q Consensus 120 ~r~~~~QkCiR~ggkhnDl~~VG~~-~rH~TfFeMlGn~sfgdYfK~eai~~awe~lt~~l~l~~~rl 186 (957)
.|..-.++|.|. +-+.-|+. ..|..-+|.+|.-+. .--.|.|.+++++|.. |||+.+.+
T Consensus 124 ~r~~y~g~vfR~-----e~~~~gR~ReF~Q~g~ei~G~~~~--~~DaEvi~l~~~~l~~-lgl~~~~~ 183 (456)
T 3lc0_A 124 AKWYSIPQCWRY-----EAITRGRRREHYQWNMDIVGVKSV--SAEVELVCAACWAMRS-LGLSSKDV 183 (456)
T ss_dssp EEEEECCEEECC-----CC-----CCEEEEEEEEEESCCST--HHHHHHHHHHHHHHHH-TTCCTTTE
T ss_pred EEEEEeccEEec-----CCCCCCCccceEEEEEEEEcCCCh--HhhHHHHHHHHHHHHH-cCCCCCce
Confidence 467888999995 43444532 123444555555443 2235899999999974 89964444
No 45
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=29.86 E-value=44 Score=39.30 Aligned_cols=88 Identities=16% Similarity=0.265 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccc------cccccCCCCCCC----cccccccccccccccc
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPNT----QLSKLTRACNTQKCIR 130 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~f------k~~flG~~~p~~----~~~~~~r~~~~QkCiR 130 (957)
++|-+.+-+||.++|...|..--|.+. ++ .+|-.+| ++++|-+.+--+ -.+.+.|+-..-+|+|
T Consensus 248 s~i~~~iR~ff~~~gF~EVeTPiL~~~-~~-----egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR 321 (548)
T 3i7f_A 248 SACCGLFREFLTSQKFVEIHTPKLIGC-SS-----EGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFR 321 (548)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSBC-------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEecc-cC-----CCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEe
Confidence 345566789999999988876555542 11 2333444 234443332100 0123567777899999
Q ss_pred cCCCCCCCCCCCCCCCccccccccccc-ccc-cc
Q 002171 131 AGGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DY 162 (957)
Q Consensus 131 ~ggkhnDl~~VG~~~rH~TfFeMlGn~-sfg-dY 162 (957)
.. +. .|.||.+=|.||--. +|+ ||
T Consensus 322 ~E-------~~-~t~RHl~EFtmlE~e~af~~d~ 347 (548)
T 3i7f_A 322 AE-------NS-NTRRHLTEFEGLDIEMEIVENY 347 (548)
T ss_dssp CS-------CC-CSSSCCSCEEEEEEEEECSSCT
T ss_pred cC-------CC-CCCCcchhhhchhhhhhhhcCH
Confidence 63 22 378999999999765 887 56
No 46
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=29.27 E-value=29 Score=32.25 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-++-..+.|.+.||+|++++||.+.+
T Consensus 75 K~~l~~~l~~~l~~~lg~~~~~v~V~i~e 103 (128)
T 1mww_A 75 KKRLIKMLFSELEYKLGIRAHDVEITIKE 103 (128)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 66777878888999999999999999975
No 47
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=26.73 E-value=34 Score=31.93 Aligned_cols=29 Identities=10% Similarity=0.003 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-++-.-+.|.+.||+|++++||++.+
T Consensus 81 K~~l~~~l~~~l~~~lg~~~~~v~I~i~e 109 (131)
T 2aal_A 81 KVCFYKLLTGALERDCGISPDDVIVALVE 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 77888888899999999999999999975
No 48
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=26.63 E-value=23 Score=39.20 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=23.3
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 002171 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (957)
Q Consensus 288 k~iDtGmGlERl~~vlq~~~s~ydtdlf 315 (957)
+|=--|+|+|||+++|-|.+|.=|.=+|
T Consensus 313 PhgG~glGiDRLvmll~g~~~IRdVi~F 340 (345)
T 3a5y_A 313 DCSGVALGVDRLVMLALGAETLAEVIAF 340 (345)
T ss_dssp SEEEEEEEHHHHHHHHHTCSSGGGGSSS
T ss_pred CCcEEEEcHHHHHHHHcCCCcHheEecC
Confidence 4666799999999999999998776444
No 49
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=26.17 E-value=1.2e+02 Score=27.24 Aligned_cols=47 Identities=21% Similarity=0.212 Sum_probs=39.5
Q ss_pred cCCCCChHHHHHhhhccCCChhhHHHHHHHcCc----eeChhhHHHHHHHH
Q 002171 453 QGKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEA 499 (957)
Q Consensus 453 ~~~~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 499 (957)
+++.|+++++-.++-+.|+|-+...+|.++... .||.++|..+|..-
T Consensus 27 ~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~ 77 (106)
T 1eh2_A 27 VNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLV 77 (106)
T ss_dssp SSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHH
T ss_pred CCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 468999999999999999999988888877543 48889999998664
No 50
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=25.82 E-value=1.1e+02 Score=28.62 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=39.1
Q ss_pred cCCCCChHHHHHhhhccCCChhhHHHHHHHcCc----eeChhhHHHHHHHH
Q 002171 453 QGKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEA 499 (957)
Q Consensus 453 ~~~~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 499 (957)
.++.|+|+++-.++-.-|+|.+....|-+.... .+|.++|..+|.--
T Consensus 45 ~dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li 95 (121)
T 3fia_A 45 ISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLI 95 (121)
T ss_dssp BTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred CCCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 468999999999999999999998888877543 58888999988654
No 51
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=25.80 E-value=40 Score=28.05 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 17 K~~L~~~it~~l~~~lg~p~~~v~V~i~e 45 (72)
T 3mb2_A 17 KAELARALSAAAAAAFDVPLAEVRLIIQE 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 66777777888889999999999999865
No 52
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=25.16 E-value=41 Score=26.46 Aligned_cols=29 Identities=3% Similarity=-0.107 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-++-..+.|.+.||+|++++||.+.+
T Consensus 19 k~~l~~~l~~~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 19 LKNLVSEVTDAVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55566777788889999999999999875
No 53
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=24.32 E-value=27 Score=39.77 Aligned_cols=103 Identities=16% Similarity=0.250 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccCC-CC--CccccccccccccccccCCCCCCCc----ccccccccccccccccCC
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVN-DP--TLLFANAGMNQYKPIFLGTADPNTQ----LSKLTRACNTQKCIRAGG 133 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~~-d~--~llf~nAGm~~fk~~flG~~~p~~~----~~~~~r~~~~QkCiR~gg 133 (957)
+.|-+.+-+||.++|...|..--+.+.. .+ .++-|+.. =++++|-++ |.-. .+.+.|+-..-+|.|.
T Consensus 138 s~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~~---~~~~~L~~S-pql~~~~~~~g~~rvf~ig~~FR~-- 211 (429)
T 1wyd_A 138 SLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYF---GKEAFLAQS-PQLYKELMAGVVERVFEVAPAWRA-- 211 (429)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEET---TEEEEECSC-CHHHHHHHHHHHSEEEEEEEEECC--
T ss_pred HHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEecC---CceEEecCC-cHHHHHHHHhCcCceEEEcccccc--
Confidence 3566778899999999888654444321 11 11112110 023455222 2100 0123577788999996
Q ss_pred CCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHchh
Q 002171 134 KHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTK 177 (957)
Q Consensus 134 khnDl~~VG~~~rH~TfFeMlG-n~sfgdYfK~eai~~awe~lt~ 177 (957)
+ +. .++||..=|.|+. -.+|.|| +|.+..+.+++..
T Consensus 212 ---E--~~-~~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 248 (429)
T 1wyd_A 212 ---E--ES-DTPFHLAEFISMDVEMAFADY--NDVMQLLEKILHN 248 (429)
T ss_dssp ---C--CC-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred ---c--CC-ccccccceeeEeeeeecCCCH--HHHHHHHHHHHHH
Confidence 2 22 2569998888885 4555575 5566666655443
No 54
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=23.79 E-value=28 Score=39.86 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccc----cccccCCCCC---CCcc-cccccccccccccccCC
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY----KPIFLGTADP---NTQL-SKLTRACNTQKCIRAGG 133 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~f----k~~flG~~~p---~~~~-~~~~r~~~~QkCiR~gg 133 (957)
+|-+.+-+||.++|...|..--+.+. ++.- .|-+.+| ++++|-+++- .--+ +.+.|+-..-+|+|..
T Consensus 142 ~i~~~iR~f~~~~gF~EVeTPiL~~~-~~eg---~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E- 216 (438)
T 3nem_A 142 SVFKAVRDFFHENGFIEIHTPKIIAT-ATEG---GTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAE- 216 (438)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESS-CSSC---SSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCC-
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEecC-CCCC---CccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECC-
Confidence 55567789999999988865444332 1110 0111111 3344533221 0001 2357888889999962
Q ss_pred CCCCCCCCCCCCCccccccccc-cccccc-c-----cHHHHHHHHHHHc
Q 002171 134 KHNDLDDVGKDTYHHTFFEMLG-NWSFGD-Y-----FKNEAIEWAWELL 175 (957)
Q Consensus 134 khnDl~~VG~~~rH~TfFeMlG-n~sfgd-Y-----fK~eai~~awe~l 175 (957)
+.. +.||..=|.||. -.+|.| | .=++.|.+++.-+
T Consensus 217 ------~~~-t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v 258 (438)
T 3nem_A 217 ------EHN-TTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYV 258 (438)
T ss_dssp ------SSC-CTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCC-CcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHH
Confidence 232 679998899985 456777 5 2345555555443
No 55
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=23.19 E-value=29 Score=39.44 Aligned_cols=103 Identities=15% Similarity=0.214 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccCC-CC--CccccccccccccccccCCCCCCCc----ccccccccccccccccCC
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVN-DP--TLLFANAGMNQYKPIFLGTADPNTQ----LSKLTRACNTQKCIRAGG 133 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~~-d~--~llf~nAGm~~fk~~flG~~~p~~~----~~~~~r~~~~QkCiR~gg 133 (957)
++|.+.+-+||.++|...|..--+.+.. .+ +++-++.. =++++|-++ |.-. .+.+.|+-..-+|.|.
T Consensus 129 s~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~~---g~~~~L~~S-pel~~~~l~~g~~rvf~ig~~FR~-- 202 (422)
T 1n9w_A 129 AALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYF---EKRAYLAQS-PQLYKQIMVGVFERVYEVAPVWRM-- 202 (422)
T ss_dssp HHHHHHHHHHHHHTTCEECCCC--------------------------------CHHHHHHHHHHHSEEEEEEEC-----
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEeeC---CCcEEeeeC-HHHHHHHHhhCCCceeEEeCceEC--
Confidence 4567788899999999988754443321 11 11222110 023344211 1000 0124678888999996
Q ss_pred CCCCCCCCCCCCCccccccccc-ccccc-cccHHHHHHHHHHHchh
Q 002171 134 KHNDLDDVGKDTYHHTFFEMLG-NWSFG-DYFKNEAIEWAWELLTK 177 (957)
Q Consensus 134 khnDl~~VG~~~rH~TfFeMlG-n~sfg-dYfK~eai~~awe~lt~ 177 (957)
+ +. .++||..=|.|++ -.+|. || +|.+..+.+++..
T Consensus 203 ---E--~~-~~~RH~pEFtqle~e~~~~~d~--~dlm~l~e~ll~~ 240 (422)
T 1n9w_A 203 ---E--EH-HTSRHLNEYLSLDVEMGFIADE--EDLMRLEEALLAE 240 (422)
T ss_dssp ----------------CCEEEEEEEESCSSH--HHHHHHHHHHHHH
T ss_pred ---C--CC-CCCcccceeEEeeeeeeCCCCH--HHHHHHHHHHHHH
Confidence 2 22 2569998898985 45555 65 6677777666554
No 56
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=22.88 E-value=30 Score=40.49 Aligned_cols=100 Identities=11% Similarity=0.206 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhhCCCeeecCCCcccCCCCCcccccccccccc--------ccccCCCCCCC----ccccccccccccccc
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK--------PIFLGTADPNT----QLSKLTRACNTQKCI 129 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~fk--------~~flG~~~p~~----~~~~~~r~~~~QkCi 129 (957)
+|-+.+-+||.++|...|..--+.|.. ..|+.-+|. +++|-+++--+ -.+.+.|+-..-+|+
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~------gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~F 254 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIP------GGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQF 254 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC------CSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccC------CCccccceeeecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcce
Confidence 445567789999999888665454421 122222222 34554332100 012356788889999
Q ss_pred ccCCCCCCCCCCCCCCCccccccccc-cccccccc-----HHHHHHHHHHHch
Q 002171 130 RAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYF-----KNEAIEWAWELLT 176 (957)
Q Consensus 130 R~ggkhnDl~~VG~~~rH~TfFeMlG-n~sfgdYf-----K~eai~~awe~lt 176 (957)
|. |+++ .||..=|.||- -.+|.||- -++-|.++|.-+.
T Consensus 255 R~-------E~~~--trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 298 (521)
T 3bju_A 255 RN-------EGID--LTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT 298 (521)
T ss_dssp CC-------SCCB--TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eC-------CCCC--CccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 96 3343 49999999984 67888873 3455666665443
No 57
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=22.73 E-value=30 Score=39.81 Aligned_cols=89 Identities=17% Similarity=0.345 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhCCCeeecCCCcccC---CCCCccccccccccc-cccccCCCCCC---CcccccccccccccccccCCC
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVPV---NDPTLLFANAGMNQY-KPIFLGTADPN---TQLSKLTRACNTQKCIRAGGK 134 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp~---~d~~llf~nAGm~~f-k~~flG~~~p~---~~~~~~~r~~~~QkCiR~ggk 134 (957)
+|-+.+-+||.++|...|..=-+.+. .-.+ +|. .+.| ++++|-+.+-- --++.+.|+-..-+|+|..
T Consensus 161 ~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~-~f~---~~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E-- 234 (456)
T 3m4p_A 161 EIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGST-LFK---LQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAE-- 234 (456)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEC------CC-CCE---EEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCC--
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeecCCCCCccc-ccc---ccccCCCcccccCHHHHHHHHHhccCcEEEEEhheecC--
Confidence 45566779999999988864333321 1111 221 1122 33445433210 0012256788888999962
Q ss_pred CCCCCCCCCCCCccccccccc-ccccccc
Q 002171 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDY 162 (957)
Q Consensus 135 hnDl~~VG~~~rH~TfFeMlG-n~sfgdY 162 (957)
+. .|.||..=|.||- -.+|.||
T Consensus 235 -----~~-~t~rH~pEFtmlE~e~af~d~ 257 (456)
T 3m4p_A 235 -----QS-RTVRHLAEYLHLEAELPFISF 257 (456)
T ss_dssp -----SC-CCSSCCSEEEEEEEEEESCCH
T ss_pred -----CC-CCCcchHHHHHhHHHHhcCCH
Confidence 22 3689998999984 4567776
No 58
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=22.60 E-value=1.4e+02 Score=26.26 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=38.5
Q ss_pred CCCCChHHHHHhhhccCCChhhHHHHHHHcCc----eeChhhHHHHHHHH
Q 002171 454 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEA 499 (957)
Q Consensus 454 ~~~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~----~vd~~~f~~~~~~~ 499 (957)
.+.|+.+++-.+..+.|+|-+.+.+|.++... .||.++|..+|..-
T Consensus 25 dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 25 TGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV 74 (99)
T ss_dssp SSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 57999999999999999999888888877433 48889999998654
No 59
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=22.20 E-value=31 Score=40.62 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=23.2
Q ss_pred ccccCchHHHHHHHHhCCCCCcccccc
Q 002171 289 HVDTGLGFERLTSILQNKMSNYDTDVF 315 (957)
Q Consensus 289 ~iDtGmGlERl~~vlq~~~s~ydtdlf 315 (957)
|=--|+|+|||++++-|.+|.=|+=+|
T Consensus 513 hgG~GlGiDRLvMlltg~~nIRdVi~F 539 (548)
T 3i7f_A 513 HAGCGIGLERITMLYLGIPNIRKVTLF 539 (548)
T ss_dssp EEEEEEEHHHHHHHHTTCSCGGGGSSS
T ss_pred ceEEEEcHHHHHHHHhCCccHHHhhcC
Confidence 667899999999999999998877555
No 60
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=22.00 E-value=32 Score=40.11 Aligned_cols=103 Identities=16% Similarity=0.277 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhCCCeeecCCCcccCCC-C-Cccccccccccc-cccccCCCCCCC----cccccccccccccccccCCC
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVPVND-P-TLLFANAGMNQY-KPIFLGTADPNT----QLSKLTRACNTQKCIRAGGK 134 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp~~d-~-~llf~nAGm~~f-k~~flG~~~p~~----~~~~~~r~~~~QkCiR~ggk 134 (957)
.|-+.+-+||.++|...|..--|.+..- . .=.|+.- .+.| ++++|-+++--+ -.+.+.|+-..-+|+|.
T Consensus 188 ~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~-~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~--- 263 (504)
T 1e1o_A 188 KILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRN--- 263 (504)
T ss_dssp HHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECC---
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec-cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccC---
Confidence 4556677899999998886544443210 0 0112110 0111 234443322100 00235677888999996
Q ss_pred CCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHch
Q 002171 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLT 176 (957)
Q Consensus 135 hnDl~~VG~~~rH~TfFeMlG-n~sfgdYfK~eai~~awe~lt 176 (957)
|+.+ .||+.=|.||. -.+|.|| ++.+..+-+++.
T Consensus 264 ----E~~~--~rH~pEFt~lE~e~af~d~--~dlm~l~E~li~ 298 (504)
T 1e1o_A 264 ----EGIS--VRHNPEFTMMELYMAYADY--HDLIELTESLFR 298 (504)
T ss_dssp ----CCCC--C-CCSEEEEEEEEEESCCH--HHHHHHHHHHHH
T ss_pred ----CCCC--ccccCceeeeeeeecCCCH--HHHHHHHHHHHH
Confidence 3343 59999999996 5677786 345555555444
No 61
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=21.93 E-value=32 Score=39.97 Aligned_cols=105 Identities=12% Similarity=0.258 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhhCCCeeecCCCcccCCCC--Cccccccccccc-cccccCCCCCCC----cccccccccccccccccCC
Q 002171 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDP--TLLFANAGMNQY-KPIFLGTADPNT----QLSKLTRACNTQKCIRAGG 133 (957)
Q Consensus 61 ~eir~~fl~ff~~~gH~~~~s~slvp~~d~--~llf~nAGm~~f-k~~flG~~~p~~----~~~~~~r~~~~QkCiR~gg 133 (957)
+.|-+.+-+||.++|...|..--+.+..-. .-.|+.- .+.| ++++|-+++--+ -.+.+.|+-..-+|+|.
T Consensus 178 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~-~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~-- 254 (493)
T 3a74_A 178 SLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH-HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRN-- 254 (493)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECC--
T ss_pred HHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec-ccCCCceeEEecCHHHHHHHHhhcccCceEEECccccC--
Confidence 356677888999999988865444432110 0112110 0011 234443321100 00235678888999996
Q ss_pred CCCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHchh
Q 002171 134 KHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTK 177 (957)
Q Consensus 134 khnDl~~VG~~~rH~TfFeMlG-n~sfgdYfK~eai~~awe~lt~ 177 (957)
|+.+ .||+.=|.||. -.+|.|| ++.++.+-+++..
T Consensus 255 -----E~~~--~rH~pEFT~lE~e~af~d~--~dlm~l~E~ll~~ 290 (493)
T 3a74_A 255 -----EGIS--TRHNPEFTMLELYEAYADF--RDIMKLTENLIAH 290 (493)
T ss_dssp -----CCCB--TTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred -----CCCC--cccCCceeEEEEEecCCCH--HHHHHHHHHHHHH
Confidence 3343 59999999996 5677786 4566666665543
No 62
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=21.78 E-value=32 Score=40.32 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhCCCeeecCCCcccCCCCCccccccccccc--------cccccCCCCCCC----ccccccccccccccc
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY--------KPIFLGTADPNT----QLSKLTRACNTQKCI 129 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp~~d~~llf~nAGm~~f--------k~~flG~~~p~~----~~~~~~r~~~~QkCi 129 (957)
.|-+.+-+||.++|...|..=-|.+.. -.|..-+| ++.||-+++--+ -.+.+.|+-..-+|+
T Consensus 209 ~i~~~iR~ff~~~gFlEVeTPiL~~~~------gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~F 282 (529)
T 4ex5_A 209 KAIASIRKFMGDADFMEVETPMLHPIP------GGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNF 282 (529)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC------CSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeccC------CCCcccccccccccCCcceecccCHHHHHHHHHhcCCCcEEEeehhe
Confidence 556677799999999888654444321 12222233 234443332100 002357888889999
Q ss_pred ccCCCCCCCCCCCCCCCccccccccc-cccccccc-----HHHHHHHHHHHch
Q 002171 130 RAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYF-----KNEAIEWAWELLT 176 (957)
Q Consensus 130 R~ggkhnDl~~VG~~~rH~TfFeMlG-n~sfgdYf-----K~eai~~awe~lt 176 (957)
|. |+++ .||..=|.||- -.+|.||- -++-|.++|.-+.
T Consensus 283 R~-------E~~~--~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v~ 326 (529)
T 4ex5_A 283 RN-------EGVS--PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDAL 326 (529)
T ss_dssp CC-------SCCB--TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ec-------CCCC--CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 96 3333 69999999984 46788873 3445555555443
No 63
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=21.72 E-value=32 Score=39.21 Aligned_cols=103 Identities=15% Similarity=0.082 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhhCCCeeecCCCcccCC-CC--CccccccccccccccccCCCCC---CCcccccccccccccccccCCCC
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVPVN-DP--TLLFANAGMNQYKPIFLGTADP---NTQLSKLTRACNTQKCIRAGGKH 135 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp~~-d~--~llf~nAGm~~fk~~flG~~~p---~~~~~~~~r~~~~QkCiR~ggkh 135 (957)
.|-+.+-+||.++|...|..--+.+.. .+ .++=|+.+ =++++|-+++- ..-.+.+.|+-..-+|.|.
T Consensus 140 ~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~~~---~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~---- 212 (434)
T 1x54_A 140 TLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKYF---DKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRA---- 212 (434)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEET---TEEEEECSCSHHHHHHHHHHHSEEEEEEEEECC----
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEeec---CCcEEeccChHHHHHHHhcCccceEEEecceec----
Confidence 456678899999999988765444421 21 11111110 02334432210 0000124688889999995
Q ss_pred CCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHHchh
Q 002171 136 NDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTK 177 (957)
Q Consensus 136 nDl~~VG~~~rH~TfFeMlG-n~sfgdYfK~eai~~awe~lt~ 177 (957)
+ +. .++||..-|.|++ -.+|.|| +|.+..+.+++..
T Consensus 213 -E--~~-~~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 249 (434)
T 1x54_A 213 -E--KS-RTRRHLTEFWHLELEAAWMDL--WDIMKVEEELVSY 249 (434)
T ss_dssp -C--CC-CCSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred -C--CC-CCcccccEEEEeeEEEcCCCH--HHHHHHHHHHHHH
Confidence 3 22 2569998888885 4555565 6677776666554
No 64
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=21.71 E-value=32 Score=39.24 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhhCCCeeecCCCccc---CCCCCccccccccccc-cccccCCCCC---CCcccccccccccccccccCCC
Q 002171 62 KVRDTFFKFFEDKNHVNWKSSPVVP---VNDPTLLFANAGMNQY-KPIFLGTADP---NTQLSKLTRACNTQKCIRAGGK 134 (957)
Q Consensus 62 eir~~fl~ff~~~gH~~~~s~slvp---~~d~~llf~nAGm~~f-k~~flG~~~p---~~~~~~~~r~~~~QkCiR~ggk 134 (957)
+|-+.+-+||.++|...|..=-+.+ .+--..+-+|+ | ++++|-+.+- ..-++.+.|+-..-+|+|..
T Consensus 137 ~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~~----~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E-- 210 (435)
T 2xgt_A 137 AATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDY----FGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAE-- 210 (435)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEEE----TTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECCC--
T ss_pred HHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeecc----CCcccccCCChHHHHHHhhhccCceEEEecceecC--
Confidence 3445677899999998886432322 22112222221 1 2334433210 00012256888888999963
Q ss_pred CCCCCCCCCCCCccccccccc-ccccccccHHHHHHHHHHH
Q 002171 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWEL 174 (957)
Q Consensus 135 hnDl~~VG~~~rH~TfFeMlG-n~sfgdYfK~eai~~awe~ 174 (957)
|+ .+.||..=|.||. -.+|.|| ++.++.+-++
T Consensus 211 --~~----~t~RH~~EFT~lE~e~af~d~--~d~m~~~E~l 243 (435)
T 2xgt_A 211 --KS----RTRRHLAEYAHVEAECPFITL--DDLMEKIEEL 243 (435)
T ss_dssp --SS----CCTTCCSEEEEEEEEEESCCH--HHHHHHHHHH
T ss_pred --CC----CccccccceeEEEEEEecCCH--HHHHHHHHHH
Confidence 22 3569998899985 4677786 3444444333
No 65
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=21.03 E-value=1.8e+02 Score=25.05 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=38.0
Q ss_pred CCCCChHHHHHhhhccCCChhhHHHHHHHcCc----eeChhhHHHHHHHHH
Q 002171 454 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEAR 500 (957)
Q Consensus 454 ~~~l~g~~~f~Lydt~G~P~dl~~~~a~e~g~----~vd~~~f~~~~~~~~ 500 (957)
.+.|+.+++-.++.+.|+|-+.+.+|.++... .||.++|..+|....
T Consensus 24 dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~ 74 (95)
T 1c07_A 24 DGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLIS 74 (95)
T ss_dssp SSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHH
T ss_pred CCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHH
Confidence 57999999999999999998888888776433 478889999886543
No 66
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=20.96 E-value=34 Score=39.63 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=24.7
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCcccccc
Q 002171 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVF 315 (957)
Q Consensus 285 L~~k~iDtGmGlERl~~vlq~~~s~ydtdlf 315 (957)
+| +|=--|+|+|||+++|-|.+|.=|+=+|
T Consensus 449 ~P-PhgG~glGiDRLvmll~g~~~IRdVi~F 478 (487)
T 1eov_A 449 CP-PHAGGGIGLERVVMFYLDLKNIRRASLF 478 (487)
T ss_dssp CC-CEEEEEEEHHHHHHHHTTCSSGGGGCSS
T ss_pred CC-CCeEEEEhHHHHHHHHcCCCcHHheeec
Confidence 44 5777899999999999999998777444
No 67
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=20.35 E-value=58 Score=26.38 Aligned_cols=29 Identities=7% Similarity=-0.143 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHchhccCCCCCceEEEEEC
Q 002171 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (957)
Q Consensus 164 K~eai~~awe~lt~~l~l~~~rl~vT~~~ 192 (957)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 16 k~~L~~~it~~~~~~lg~p~~~v~V~i~e 44 (65)
T 3ry0_A 16 VAALGEALTAAAHETLGTPVEAVRVIVEE 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 66777777888889999999999999865
Done!