RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 002171
(957 letters)
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex
aeolicus [TaxId: 63363]}
Length = 236
Score = 286 bits (732), Expect = 1e-90
Identities = 124/253 (49%), Positives = 163/253 (64%), Gaps = 22/253 (8%)
Query: 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKL 119
A ++R+ F FFE K H KS+P+VP NDPTLLF NAGM +K +FLG
Sbjct: 4 AHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPY----- 58
Query: 120 TRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVY 179
RA + QKC+R GKHNDL+ VG + HHTFFEMLGN+SFGDYFK EAIE+AWE +T+V
Sbjct: 59 KRATSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVL 118
Query: 180 RLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPASRVLPFGCKDNFWEMGDTGPCG 237
+LP ++LY + + D EA IW + +P+ R+ G +DNFW+MGD GPCG
Sbjct: 119 KLPKEKLYVSVYKDD--------EEAYRIWNEHIGIPSERIWRLGEEDNFWQMGDVGPCG 170
Query: 238 PCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLGFE 297
P SEI+ DR D +EIWN+VF+Q+NR+ +G L PLP ++DTG+G E
Sbjct: 171 PSSEIYVDRGEE-------YEGDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMGLE 223
Query: 298 RLTSILQNKMSNY 310
R+ S+LQ K SN+
Sbjct: 224 RIASVLQGKNSNF 236
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of
alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId:
63363]}
Length = 221
Score = 161 bits (407), Expect = 2e-45
Identities = 78/204 (38%), Positives = 123/204 (60%), Gaps = 11/204 (5%)
Query: 311 DTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNE 370
+ D+ P+ ++ +G + + + D+A RV+ADH+R ++FAI+DG P NE
Sbjct: 1 EIDIIFPLIQFGEEVSGKKY-------GEKFETDVALRVIADHLRAITFAISDGVIPSNE 53
Query: 371 GREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAE 430
GR YV+RRILRRA+R+G + L ++ F V++VV +M + +PEL+ ++ I+ E
Sbjct: 54 GRGYVIRRILRRAMRFGYK-LGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGE 112
Query: 431 EASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLV 487
E F KTL G+E ++ Q K LSG++ F +DTYGFP+DL +A E+GL +
Sbjct: 113 EKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGI 172
Query: 488 DIEGFNNAMDEARERSRSAQNKQA 511
D+EGF ++E RER+R +A
Sbjct: 173 DLEGFQCELEEQRERARKHFKVEA 196
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 129
Score = 103 bits (258), Expect = 1e-26
Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 38/164 (23%)
Query: 634 DYDRRKLIAPNHTCTHMLNFALREVLGDHV-DQKGSVVLPEKLRFDFSHGKPVDPEHLRR 692
D+D R + HT H+L L EVLG+ GS + EK R+D ++ + ++ +
Sbjct: 1 DWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKYK-EQ 59
Query: 693 IESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPE 752
I S+ N+ + +V + R I
Sbjct: 60 IISLFNKYVDEGGEVKIW--------------------WEGDRRYTQIR----------- 88
Query: 753 NKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAV 796
CGGTH+ + +E L I +G +R+
Sbjct: 89 -----DFEVIPCGGTHVKDIKEIGHIKKLKRSSIGRGKQRLEMW 127
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 151
Score = 95.3 bits (236), Expect = 2e-23
Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 15/152 (9%)
Query: 644 NHTCTHMLNFALREVLGDHVDQKGS-VVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIK 702
H+ H++ A+ +VLG S V K + E +R IE + NE++K
Sbjct: 8 THSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVK 67
Query: 703 AELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAE 762
+ E EA+ + G P+ VR++ + + +
Sbjct: 68 ENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDW-------------NVN 114
Query: 763 LCGGTHLSNTREAEAFALLSEEG-IAKGIRRI 793
C H T E + +KG+ I
Sbjct: 115 ACNKEHTKTTGEIGPIKIRKVRFRKSKGLLEI 146
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Staphylococcus aureus
[TaxId: 1280]}
Length = 179
Score = 66.7 bits (162), Expect = 3e-13
Identities = 32/168 (19%), Positives = 63/168 (37%), Gaps = 20/168 (11%)
Query: 636 DRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIES 695
L H+ H++ A++ + G+ G V+ +DF + + + +IE
Sbjct: 4 SEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQNISSDDFEQIEK 62
Query: 696 IVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKE 755
+ + + + + K + EA + +F D ++ I ED +
Sbjct: 63 TMKQIVNENMKIERKVVSRDEA------KELFSN---DEYKLELIDAIPED---ENVTLY 110
Query: 756 WLSISAELCGGTHLSNTREAEAFALLSEEGIA-------KGIRRITAV 796
+LC G H+ +T + + F LLS G K ++RI
Sbjct: 111 SQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGT 158
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 87
Score = 61.4 bits (149), Expect = 2e-12
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 557 EFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQ-IYGGFVIHIGS 615
E V+ + I+L + FY GGQ D G I G V +V G V H+
Sbjct: 17 EAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTING----VEVLDVYKDEEGNVWHVV- 71
Query: 616 LTEGAGRFSVGEEVICKV 633
+ +F VG+EV K+
Sbjct: 72 --KEPEKFKVGDEVELKI 87
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS),
second 'additional' domain {Escherichia coli [TaxId:
562]}
Length = 162
Score = 63.3 bits (153), Expect = 3e-12
Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 12/152 (7%)
Query: 634 DYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRI 693
D + ++I H+C H+L A+++ L H V+ +D + + E + +
Sbjct: 2 DEEGLEII--RHSCAHLLGHAIKQ-LWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEAL 58
Query: 694 ESIVNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPEN 753
E ++E + DV K+ + EA+ R +V + D
Sbjct: 59 EKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVS------ILDENIAHDDKPGLYF 112
Query: 754 KEWLSISAELCGGTHLSNTREAEAFALLSEEG 785
E ++C G H+ N R F L+ G
Sbjct: 113 HEE---YVDMCRGPHVPNMRFCHHFKLMKTAG 141
>d1zupa1 c.55.3.11 (A:1-301) Hypothetical protein TM1739 {Thermotoga
maritima [TaxId: 2336]}
Length = 301
Score = 33.7 bits (77), Expect = 0.083
Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 11/127 (8%)
Query: 690 LRRIESIVNEQIKAELDV-FSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLL 748
+ R E I +E + D F +E+ E D + V R+ +
Sbjct: 5 IERAERIESELEEHVGDQTFVEESRFLEEDEQREGE------ILDQIIFVDGKRRSFVRI 58
Query: 749 ADPENKEWLSISAELCGGTHLSNTREAEAFALLSEEGIAKGIRRITAVTTGLAYKAFEAA 808
E I AELC G + RE L S + R+ + + +E
Sbjct: 59 TTDEGIT--GIFAELCVGA-VIWDREGGTKTLFSPDKPPV-KERVLGFSQSFQEEGYEEV 114
Query: 809 CSLEKEV 815
+ +V
Sbjct: 115 GGILFKV 121
>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit
RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 30.4 bits (69), Expect = 0.13
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 814 EVDDASKIEG-SLLEKTVASL--KSKVDGAAIPAPKKADIRAKIALLQNQVRKAQKKVAE 870
+ +A K++G EK V + + G D+R K L ++ K K +
Sbjct: 1 DSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWS-----RDVRYKSNLPLTEINKILKNLES 55
Query: 871 ENLQKAVK 878
+ L KAVK
Sbjct: 56 KKLIKAVK 63
>d4pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 30.5 bits (68), Expect = 1.0
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 364 GSCPG-NEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVN 403
G PG N +R ++R+A+ +G EV G + GL+
Sbjct: 11 GDSPGMNA----AIRSVVRKAIYHGVEVYGVYHG-YAGLIA 46
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 96
Score = 27.5 bits (61), Expect = 2.0
Identities = 9/55 (16%), Positives = 21/55 (38%)
Query: 654 ALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVF 708
R+++ D+ V+P +L P D + + + V E ++ +
Sbjct: 27 QWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLL 81
>d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246
{Methanococcus jannaschii [TaxId: 2190]}
Length = 93
Score = 27.6 bits (61), Expect = 2.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 848 ADIRAKIALLQNQVRKAQKKVAEENLQKAVKVATETAEAAASNGKPF 894
A+IR KI + N++ KA+ AE+ + + +A + AE G P
Sbjct: 6 AEIRKKIDEIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGIPI 52
>d1u2xa_ c.72.1.3 (A:) ADP-specific phosphofructokinase {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 450
Score = 29.1 bits (65), Expect = 2.8
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 867 KVAEENLQKAVKVATETAEAAASNGKPFCISRVEVGLDAAA--VREAVLKVIEQKVACRS 924
++EE L K+++ T A A AS G +VGL E V E+ +
Sbjct: 349 PLSEEELAKSLEFGTTLAAARASLGDIRGPDDYKVGLKVPFNERSEYVKLRFEEAKSRLR 408
Query: 925 WSSV 928
Sbjct: 409 MREY 412
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1
(beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 27.8 bits (61), Expect = 2.9
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 926 SSVPMKPRIRLSYVQVYQRNQTRANSWRC 954
+ P R Y ++ Q +T ++WRC
Sbjct: 90 GNAPPNSFYRALYPKIIQDIETIESNWRC 118
>d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase
{Escherichia coli [TaxId: 562]}
Length = 320
Score = 28.5 bits (63), Expect = 3.4
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 364 GSCPG-NEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVN 403
G PG N +R ++R A+ G EV+ DG + GL
Sbjct: 12 GDAPGMNA----AIRGVVRSALTEGLEVMGIYDG-YLGLYE 47
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 26.9 bits (59), Expect = 4.0
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 100 NQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHN 136
+ F G + +AC ++C+ G
Sbjct: 35 ALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKE 71
>d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase
pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]}
Length = 326
Score = 28.5 bits (63), Expect = 4.3
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 389 EVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIRE 425
++ Q GF + + + + + V + R+
Sbjct: 280 KIPSMQVGFIDAICLQLYEALTHVSEDCFPLLDGCRK 316
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 28.1 bits (62), Expect = 6.0
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 385 RYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQ 418
R AQ GF ++ + + + +FP +++
Sbjct: 263 RDKVTKATAQIGFIKFVLIPMFETVTKLFPMVEE 296
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.399
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,577,661
Number of extensions: 173444
Number of successful extensions: 527
Number of sequences better than 10.0: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 22
Length of query: 957
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 863
Effective length of database: 1,116,976
Effective search space: 963950288
Effective search space used: 963950288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)