BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002173
         (956 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UX9|A Chain A, Structural Insights Into A Human Anti-Ifn Antibody
           Exerting Therapeutic Potential For Systemic Lupus
           Erythematosus
 pdb|3UX9|C Chain C, Structural Insights Into A Human Anti-Ifn Antibody
           Exerting Therapeutic Potential For Systemic Lupus
           Erythematosus
          Length = 169

 Score = 30.4 bits (67), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 16/107 (14%)

Query: 830 SILIVDKIIKISEVTCEMTDADNFINQEKIDGSQ-------NSVAESVQDIVKVGGTNDH 882
           +++++ ++ +IS  +C M   D    QE+ DG+Q       + + E +Q I  +  T D 
Sbjct: 17  TLMLLAQMSRISPSSCLMDRHDFGFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKD- 75

Query: 883 STPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKL 929
           S+ A  +D++  + +E+           + DL  C   +  +GE  L
Sbjct: 76  SSAAWDEDLLDKFCTEL--------YQQLNDLEACVMQEERVGETPL 114


>pdb|1RJ5|A Chain A, Crystal Structure Of The Extracellular Domain Of Murine
           Carbonic Anhydrase Xiv
 pdb|1RJ5|B Chain B, Crystal Structure Of The Extracellular Domain Of Murine
           Carbonic Anhydrase Xiv
 pdb|1RJ6|A Chain A, Crystal Structure Of The Extracellular Domain Of Murine
           Carbonic Anhydrase Xiv In Complex With Acetazolamide
 pdb|1RJ6|B Chain B, Crystal Structure Of The Extracellular Domain Of Murine
           Carbonic Anhydrase Xiv In Complex With Acetazolamide
          Length = 261

 Score = 30.0 bits (66), Expect = 6.9,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 86  LLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEE--KSNLDLTLVSLL 143
           L++     N   DHILS+L E+  K+++      +V E F    E+  + N  LT     
Sbjct: 146 LIEVGETENPAYDHILSRLHEIRYKDQKTSVPPFSVRELFPQQLEQFFRYNGSLTTPPCY 205

Query: 144 KRE-EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANH 185
           +     V  R A +   + + L  QETL+S E +  + ++ N+
Sbjct: 206 QSVLWTVFNRRAQISMGQLEKL--QETLSSTEEDPSEPLVQNY 246


>pdb|2JES|A Chain A, Portal Protein From Bacteriophage Spp1
 pdb|2JES|C Chain C, Portal Protein From Bacteriophage Spp1
 pdb|2JES|E Chain E, Portal Protein From Bacteriophage Spp1
 pdb|2JES|G Chain G, Portal Protein From Bacteriophage Spp1
 pdb|2JES|I Chain I, Portal Protein From Bacteriophage Spp1
 pdb|2JES|K Chain K, Portal Protein From Bacteriophage Spp1
 pdb|2JES|M Chain M, Portal Protein From Bacteriophage Spp1
 pdb|2JES|O Chain O, Portal Protein From Bacteriophage Spp1
 pdb|2JES|Q Chain Q, Portal Protein From Bacteriophage Spp1
 pdb|2JES|S Chain S, Portal Protein From Bacteriophage Spp1
 pdb|2JES|U Chain U, Portal Protein From Bacteriophage Spp1
 pdb|2JES|W Chain W, Portal Protein From Bacteriophage Spp1
 pdb|2JES|Y Chain Y, Portal Protein From Bacteriophage Spp1
          Length = 503

 Score = 30.0 bits (66), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 8/53 (15%)

Query: 166 SQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAW 218
           S + +A  ++  IQK+I  H     +K         ++Y + E++IEKKRR +
Sbjct: 22  SAKEIAEPDTTMIQKLIDEHNPEPLLK--------GVRYYMCENDIEKKRRTY 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.125    0.330 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,546,183
Number of Sequences: 62578
Number of extensions: 782146
Number of successful extensions: 2002
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1935
Number of HSP's gapped (non-prelim): 85
length of query: 956
length of database: 14,973,337
effective HSP length: 108
effective length of query: 848
effective length of database: 8,214,913
effective search space: 6966246224
effective search space used: 6966246224
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)