BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002173
         (956 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein
           OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1
          Length = 1042

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/889 (49%), Positives = 597/889 (67%), Gaps = 103/889 (11%)

Query: 1   MVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEE 60
           M+E+A KK A+AEAK+ AAE+LQAEANRYHR AERKL+EV +REDDL+RR+ASFK++CE 
Sbjct: 171 MIEDALKKLADAEAKMRAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECET 230

Query: 61  KEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRAN 120
           KE E++ ERQ+L++R+K LQQEHERLLDAQ  LN+REDHI ++ QEL+  EK L+ ++  
Sbjct: 231 KENEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTT 290

Query: 121 VEEKFKALNEEKSNLDLTLVSLLKREE---------------------------AVIERE 153
            EE+ KA  ++KSNL++ L    KREE                           AV ERE
Sbjct: 291 FEEERKAFEDKKSNLEIALALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERE 350

Query: 154 ASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEK 213
           +SL KKEQ+LLV++E +ASKES  IQ ++AN E  LR ++S+ EAEL  K K  E EIE 
Sbjct: 351 SSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIES 410

Query: 214 KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE 273
           KRRAWELR++D+ QRE+ + E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++
Sbjct: 411 KRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEED 470

Query: 274 ADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKL 333
            + K ++L+ EKE +  +  +LQ+SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KL
Sbjct: 471 INRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKL 530

Query: 334 KEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL 393
           KEELD +RAQKLE++ E D+L++EKAKFEAEWE ID KREELRKEAE +  +R   S  L
Sbjct: 531 KEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYL 590

Query: 394 KDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEM 453
           KDERD++++ERDA+R+QHK DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEM
Sbjct: 591 KDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEM 650

Query: 454 QKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLD 513
           QKR+LE CIE +REELE+S R+REKAFE+EK  E ++I SLKE AEKELE V +E+KRLD
Sbjct: 651 QKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLD 710

Query: 514 LERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLED 573
            ER+EI +DR+RR+REWAEL +S+EEL VQR+KLE QR +L A+R+EI+ E E LKKLE+
Sbjct: 711 AERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLEN 770

Query: 574 LKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFD-------VTNN 626
           LK+A+D M++++MQ S LE S +K+SA   L Q+       +  D + D       V+N+
Sbjct: 771 LKVALDDMSMAKMQLSNLERSWEKVSA---LKQKV------VSRDDELDLQNGVSTVSNS 821

Query: 627 GDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLT 686
            D +N+ S+++    +P S   FSWIKR  +L+FK S E S                   
Sbjct: 822 EDGYNS-SMERQNGLTPSSATPFSWIKRCTNLIFKTSPEKST------------------ 862

Query: 687 INSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAAR 746
                   + + + E      VPSE       + LES   +  A     S++ + + A R
Sbjct: 863 --------LMHHYEEEGG---VPSEK------LKLESSRREEKAYTEGLSIAVERLEAGR 905

Query: 747 KRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNK 806
           KRR +    + SE    NNK+RK   D  +  S+EA     ++   N+PED+H L S ++
Sbjct: 906 KRRGNTSGDETSE--PSNNKKRKH--DVTQKYSDEADTQSVISSPQNVPEDKHELPS-SQ 960

Query: 807 SNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFIN 855
           +  P G+                  +++ + +KI+ VTCE T+  N + 
Sbjct: 961 TQTPSGM------------------VVISETVKITRVTCE-TEVTNKVT 990


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.125    0.324 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 322,360,359
Number of Sequences: 539616
Number of extensions: 14064296
Number of successful extensions: 133175
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 5231
Number of HSP's that attempted gapping in prelim test: 74882
Number of HSP's gapped (non-prelim): 27699
length of query: 956
length of database: 191,569,459
effective HSP length: 127
effective length of query: 829
effective length of database: 123,038,227
effective search space: 101998690183
effective search space used: 101998690183
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)