Query 002173
Match_columns 956
No_of_seqs 37 out of 39
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 18:10:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 99.2 8.2E-05 1.8E-09 95.9 72.2 452 4-470 905-1396(1930)
2 PRK02224 chromosome segregatio 99.1 5.3E-05 1.1E-09 90.5 55.1 17 331-347 623-639 (880)
3 PRK02224 chromosome segregatio 98.9 0.00073 1.6E-08 81.0 66.8 33 332-364 472-504 (880)
4 PRK03918 chromosome segregatio 98.8 0.00088 1.9E-08 80.0 64.9 51 502-552 661-711 (880)
5 KOG0161 Myosin class II heavy 98.8 0.0021 4.6E-08 83.5 66.4 483 29-557 902-1415(1930)
6 TIGR00606 rad50 rad50. This fa 98.8 0.0025 5.4E-08 80.6 65.1 77 13-90 576-652 (1311)
7 TIGR02168 SMC_prok_B chromosom 98.7 0.0034 7.5E-08 75.7 72.0 50 31-80 263-312 (1179)
8 TIGR00606 rad50 rad50. This fa 98.6 0.0095 2.1E-07 75.6 66.1 55 103-157 575-629 (1311)
9 PRK03918 chromosome segregatio 98.5 0.006 1.3E-07 73.1 67.2 15 696-710 815-829 (880)
10 TIGR02168 SMC_prok_B chromosom 98.5 0.0095 2.1E-07 72.0 70.4 86 37-122 241-326 (1179)
11 PRK01156 chromosome segregatio 98.4 0.016 3.5E-07 70.3 69.3 48 523-570 683-730 (895)
12 PF12128 DUF3584: Protein of u 98.3 0.027 5.8E-07 71.2 68.5 207 322-532 594-810 (1201)
13 TIGR02169 SMC_prok_A chromosom 98.0 0.086 1.9E-06 64.4 71.6 51 337-387 690-740 (1164)
14 PRK01156 chromosome segregatio 97.9 0.14 3E-06 62.5 66.8 59 496-554 670-728 (895)
15 KOG1029 Endocytic adaptor prot 97.8 0.038 8.3E-07 66.8 31.4 216 190-429 316-565 (1118)
16 PF07888 CALCOCO1: Calcium bin 97.7 0.23 5E-06 58.8 43.7 50 527-578 409-458 (546)
17 COG1196 Smc Chromosome segrega 97.6 0.48 1E-05 60.1 70.2 79 308-386 675-753 (1163)
18 TIGR02169 SMC_prok_A chromosom 97.4 0.61 1.3E-05 57.2 75.5 46 336-381 675-720 (1164)
19 COG1196 Smc Chromosome segrega 97.1 1.8 3.8E-05 55.2 74.0 109 7-124 172-286 (1163)
20 PF01576 Myosin_tail_1: Myosin 97.1 0.00014 3E-09 88.4 0.0 303 186-542 259-567 (859)
21 PF00261 Tropomyosin: Tropomyo 97.0 0.29 6.2E-06 51.7 23.4 170 3-172 18-187 (237)
22 PF07888 CALCOCO1: Calcium bin 96.9 1.7 3.7E-05 51.8 41.2 95 331-429 353-447 (546)
23 COG0419 SbcC ATPase involved i 96.7 2.6 5.7E-05 52.2 70.3 43 227-269 400-442 (908)
24 PF00261 Tropomyosin: Tropomyo 96.6 1.2 2.7E-05 47.0 27.5 234 7-260 1-234 (237)
25 KOG0250 DNA repair protein RAD 96.6 3.7 8.1E-05 52.1 33.4 69 508-576 732-800 (1074)
26 COG0419 SbcC ATPase involved i 96.5 3.8 8.2E-05 50.9 67.3 57 325-382 563-619 (908)
27 PRK12704 phosphodiesterase; Pr 96.3 0.19 4E-06 59.1 18.1 76 193-275 59-134 (520)
28 PRK11637 AmiB activator; Provi 96.2 2.1 4.6E-05 48.6 25.4 45 142-186 91-135 (428)
29 PRK04863 mukB cell division pr 96.1 8.4 0.00018 51.0 41.3 107 14-121 293-399 (1486)
30 PF10174 Cast: RIM-binding pro 96.0 6.5 0.00014 48.9 61.4 353 108-472 131-533 (775)
31 TIGR03319 YmdA_YtgF conserved 95.9 0.39 8.5E-06 56.4 18.1 75 193-274 53-127 (514)
32 PF08317 Spc7: Spc7 kinetochor 95.8 1.9 4.2E-05 47.7 22.3 167 239-411 126-292 (325)
33 KOG0250 DNA repair protein RAD 95.7 9.5 0.00021 48.7 30.8 114 278-391 329-443 (1074)
34 PRK00106 hypothetical protein; 95.6 1.1 2.3E-05 53.3 20.1 75 193-274 74-148 (535)
35 PF00038 Filament: Intermediat 95.5 4.5 9.8E-05 43.5 36.9 232 332-578 58-295 (312)
36 PRK12704 phosphodiesterase; Pr 95.1 0.31 6.7E-06 57.3 13.9 61 203-266 58-118 (520)
37 TIGR03319 YmdA_YtgF conserved 95.0 0.33 7.2E-06 57.0 13.7 70 202-274 51-120 (514)
38 PRK00106 hypothetical protein; 94.8 1.4 3.1E-05 52.3 18.0 36 710-750 452-487 (535)
39 PHA02562 46 endonuclease subun 94.5 12 0.00026 43.3 27.7 92 298-389 307-398 (562)
40 KOG0018 Structural maintenance 94.2 23 0.0005 45.5 31.8 295 202-523 181-481 (1141)
41 PF12072 DUF3552: Domain of un 94.1 1.2 2.5E-05 46.3 13.7 70 199-268 61-130 (201)
42 PF10174 Cast: RIM-binding pro 93.9 23 0.00051 44.2 62.0 78 282-359 276-353 (775)
43 KOG0964 Structural maintenance 93.8 27 0.00058 44.7 34.0 116 157-274 170-298 (1200)
44 KOG0964 Structural maintenance 93.3 33 0.0007 44.0 34.9 299 49-364 173-489 (1200)
45 PRK11637 AmiB activator; Provi 92.7 22 0.00048 40.6 26.7 65 78-142 69-133 (428)
46 PHA02562 46 endonuclease subun 92.5 25 0.00055 40.7 33.8 98 277-381 307-404 (562)
47 PF01576 Myosin_tail_1: Myosin 92.2 0.041 9E-07 67.6 0.0 512 2-546 168-739 (859)
48 PF12072 DUF3552: Domain of un 91.2 6.1 0.00013 41.1 14.4 59 217-275 72-130 (201)
49 PF00038 Filament: Intermediat 91.2 25 0.00054 38.0 35.5 71 462-536 235-305 (312)
50 PRK12705 hypothetical protein; 89.6 21 0.00046 42.7 18.5 61 200-267 61-121 (508)
51 KOG0933 Structural maintenance 89.4 79 0.0017 40.9 37.5 262 30-310 669-940 (1174)
52 COG1340 Uncharacterized archae 88.9 46 0.001 37.6 30.4 54 237-290 30-83 (294)
53 KOG0996 Structural maintenance 87.9 1E+02 0.0023 40.5 41.9 265 148-424 335-612 (1293)
54 PF09755 DUF2046: Uncharacteri 87.6 57 0.0012 37.1 24.2 113 396-515 85-200 (310)
55 KOG4674 Uncharacterized conser 86.9 1.4E+02 0.0031 41.0 66.3 318 160-478 635-997 (1822)
56 PF12718 Tropomyosin_1: Tropom 86.2 40 0.00086 33.9 16.4 91 25-126 11-101 (143)
57 PF05483 SCP-1: Synaptonemal c 86.0 1E+02 0.0022 38.5 66.3 310 54-382 231-567 (786)
58 PF13851 GAS: Growth-arrest sp 85.9 50 0.0011 34.8 19.2 143 323-482 22-168 (201)
59 PF05557 MAD: Mitotic checkpoi 85.9 5.7 0.00012 48.3 11.4 112 12-130 91-210 (722)
60 smart00787 Spc7 Spc7 kinetocho 84.7 75 0.0016 35.8 21.8 167 239-411 121-287 (312)
61 TIGR03185 DNA_S_dndD DNA sulfu 84.4 1.1E+02 0.0023 37.3 31.7 47 501-547 422-468 (650)
62 PF08317 Spc7: Spc7 kinetochor 83.8 79 0.0017 35.3 18.7 31 336-366 231-261 (325)
63 PF05667 DUF812: Protein of un 83.7 1.2E+02 0.0025 37.3 24.9 216 97-332 320-544 (594)
64 PF05701 WEMBL: Weak chloropla 83.0 1.1E+02 0.0024 36.5 46.2 147 266-430 282-428 (522)
65 KOG0977 Nuclear envelope prote 81.8 1.3E+02 0.0029 36.6 28.0 246 66-342 137-384 (546)
66 KOG0996 Structural maintenance 80.7 2.1E+02 0.0044 38.0 41.5 154 314-483 384-540 (1293)
67 KOG4643 Uncharacterized coiled 80.6 2E+02 0.0042 37.7 41.2 34 336-369 316-349 (1195)
68 PF13863 DUF4200: Domain of un 78.7 54 0.0012 31.1 12.8 88 207-304 12-99 (126)
69 PRK04863 mukB cell division pr 78.5 2.6E+02 0.0057 37.9 39.8 44 500-543 558-601 (1486)
70 KOG0976 Rho/Rac1-interacting s 78.2 2.1E+02 0.0046 36.7 37.5 317 15-344 57-402 (1265)
71 PF09755 DUF2046: Uncharacteri 77.7 1.4E+02 0.003 34.2 22.3 98 345-445 80-188 (310)
72 PF05262 Borrelia_P83: Borreli 77.1 1.3E+02 0.0028 36.3 17.7 70 248-317 189-258 (489)
73 PF05557 MAD: Mitotic checkpoi 77.0 0.77 1.7E-05 55.5 0.0 70 501-570 358-427 (722)
74 PRK12705 hypothetical protein; 75.0 1.7E+02 0.0036 35.4 18.1 60 193-256 65-124 (508)
75 PF00769 ERM: Ezrin/radixin/mo 74.7 69 0.0015 34.8 13.7 126 3-128 1-126 (246)
76 PF00769 ERM: Ezrin/radixin/mo 74.4 1.1E+02 0.0024 33.2 15.2 106 287-410 13-118 (246)
77 TIGR03007 pepcterm_ChnLen poly 73.8 1.8E+02 0.0039 33.7 17.6 25 6-30 167-191 (498)
78 PF06818 Fez1: Fez1; InterPro 73.2 1.2E+02 0.0026 32.8 14.7 148 287-456 32-192 (202)
79 KOG0933 Structural maintenance 70.6 3.5E+02 0.0075 35.6 39.5 53 460-512 986-1042(1174)
80 PF12128 DUF3584: Protein of u 70.0 3.6E+02 0.0077 35.6 68.5 66 7-72 246-311 (1201)
81 PRK09039 hypothetical protein; 69.8 2E+02 0.0044 32.7 20.3 51 308-358 117-167 (343)
82 KOG4643 Uncharacterized coiled 68.4 3.8E+02 0.0083 35.3 44.6 131 239-369 413-550 (1195)
83 PF10473 CENP-F_leu_zip: Leuci 67.1 1.5E+02 0.0033 30.2 18.4 90 311-400 7-96 (140)
84 PF04111 APG6: Autophagy prote 65.3 91 0.002 35.0 12.6 68 315-382 17-90 (314)
85 PF04111 APG6: Autophagy prote 64.3 95 0.0021 34.9 12.5 34 322-355 100-133 (314)
86 KOG4674 Uncharacterized conser 64.1 5.7E+02 0.012 35.7 65.3 473 6-498 709-1252(1822)
87 PF05701 WEMBL: Weak chloropla 63.5 3.3E+02 0.0071 32.7 48.6 367 152-571 32-408 (522)
88 PRK09039 hypothetical protein; 63.4 2.7E+02 0.0059 31.8 20.6 40 262-301 113-152 (343)
89 TIGR01005 eps_transp_fam exopo 63.4 3.2E+02 0.0069 33.6 17.6 57 6-62 200-264 (754)
90 PF10146 zf-C4H2: Zinc finger- 63.1 1.8E+02 0.0039 31.8 13.8 96 316-411 3-104 (230)
91 PF10146 zf-C4H2: Zinc finger- 62.9 2.1E+02 0.0046 31.3 14.3 76 471-554 4-79 (230)
92 KOG0612 Rho-associated, coiled 62.5 5.2E+02 0.011 34.7 42.2 112 268-386 542-653 (1317)
93 PF11559 ADIP: Afadin- and alp 62.0 1.7E+02 0.0037 29.0 14.8 76 239-317 71-146 (151)
94 TIGR03185 DNA_S_dndD DNA sulfu 61.8 3.7E+02 0.0081 32.8 36.5 29 354-382 260-288 (650)
95 PF10186 Atg14: UV radiation r 61.5 2.2E+02 0.0048 30.1 16.6 96 88-183 60-155 (302)
96 KOG0804 Cytoplasmic Zn-finger 61.4 2.4E+02 0.0051 34.1 15.1 109 335-466 347-455 (493)
97 PF09726 Macoilin: Transmembra 61.2 4.3E+02 0.0092 33.3 26.7 54 200-261 543-597 (697)
98 KOG1029 Endocytic adaptor prot 61.0 4.7E+02 0.01 33.8 30.7 23 119-141 440-462 (1118)
99 KOG0980 Actin-binding protein 59.1 5.2E+02 0.011 33.6 23.0 193 1-209 352-544 (980)
100 PF12126 DUF3583: Protein of u 58.8 3.2E+02 0.0069 31.5 15.0 121 291-422 4-124 (324)
101 COG4026 Uncharacterized protei 57.2 70 0.0015 35.4 9.5 82 324-409 119-205 (290)
102 PF12718 Tropomyosin_1: Tropom 56.9 2.2E+02 0.0049 28.7 15.1 99 3-105 10-108 (143)
103 PF09731 Mitofilin: Mitochondr 54.8 4.4E+02 0.0096 31.5 23.2 13 559-571 430-442 (582)
104 PRK11281 hypothetical protein; 53.0 7E+02 0.015 33.2 24.9 121 61-181 126-261 (1113)
105 TIGR01843 type_I_hlyD type I s 51.0 3.8E+02 0.0083 29.7 19.6 55 40-94 128-182 (423)
106 KOG0977 Nuclear envelope prote 50.5 5.7E+02 0.012 31.5 35.6 57 461-528 321-377 (546)
107 COG1579 Zn-ribbon protein, pos 50.1 4E+02 0.0086 29.6 23.0 91 347-441 94-184 (239)
108 COG2433 Uncharacterized conser 47.7 1.9E+02 0.0042 35.9 12.0 72 310-385 425-496 (652)
109 KOG0962 DNA repair protein RAD 47.3 9E+02 0.019 32.9 61.7 122 446-580 992-1113(1294)
110 TIGR03007 pepcterm_ChnLen poly 47.1 5.2E+02 0.011 30.1 17.7 15 195-209 359-373 (498)
111 PF08614 ATG16: Autophagy prot 45.8 2.2E+02 0.0047 29.6 10.8 77 59-135 70-146 (194)
112 PRK00409 recombination and DNA 45.7 3E+02 0.0066 34.7 13.7 16 193-208 388-403 (782)
113 PF04871 Uso1_p115_C: Uso1 / p 45.7 3.3E+02 0.0072 27.4 14.3 37 315-351 78-114 (136)
114 PRK00409 recombination and DNA 45.4 4.9E+02 0.011 33.0 15.5 105 99-203 489-593 (782)
115 PF12329 TMF_DNA_bd: TATA elem 45.3 2.1E+02 0.0045 26.1 9.2 67 295-371 3-69 (74)
116 PF07926 TPR_MLP1_2: TPR/MLP1/ 43.9 3.3E+02 0.0071 26.8 17.0 100 285-387 16-115 (132)
117 PF03962 Mnd1: Mnd1 family; I 43.8 3.7E+02 0.0079 28.4 12.1 38 289-326 65-102 (188)
118 COG4942 Membrane-bound metallo 43.3 6.6E+02 0.014 30.1 29.3 75 287-364 172-246 (420)
119 PF07106 TBPIP: Tat binding pr 42.0 2.8E+02 0.006 28.1 10.6 32 286-317 72-103 (169)
120 PF03962 Mnd1: Mnd1 family; I 41.5 4.4E+02 0.0095 27.8 12.2 27 333-359 74-100 (188)
121 TIGR02680 conserved hypothetic 40.7 1.1E+03 0.023 31.9 28.3 59 456-514 1085-1145(1353)
122 PRK06800 fliH flagellar assemb 39.4 96 0.0021 33.5 7.1 41 486-526 38-78 (228)
123 PF14988 DUF4515: Domain of un 39.3 5.2E+02 0.011 27.8 14.8 111 424-534 7-127 (206)
124 PF10473 CENP-F_leu_zip: Leuci 38.3 4.6E+02 0.01 26.9 16.8 101 75-175 1-101 (140)
125 KOG4661 Hsp27-ERE-TATA-binding 37.3 4.5E+02 0.0098 32.8 12.7 21 427-447 680-700 (940)
126 TIGR01069 mutS2 MutS2 family p 35.5 7E+02 0.015 31.7 14.6 10 193-202 383-392 (771)
127 PF11932 DUF3450: Protein of u 35.3 6E+02 0.013 27.4 13.6 55 346-400 60-114 (251)
128 TIGR01010 BexC_CtrB_KpsE polys 35.0 3.3E+02 0.0072 30.5 10.8 28 5-32 175-202 (362)
129 TIGR01069 mutS2 MutS2 family p 33.8 9.4E+02 0.02 30.6 15.4 101 98-198 483-583 (771)
130 KOG0804 Cytoplasmic Zn-finger 33.1 9.8E+02 0.021 29.2 14.8 75 232-309 373-447 (493)
131 KOG3915 Transcription regulato 33.0 2.7E+02 0.0058 33.8 9.9 30 328-357 507-536 (641)
132 PRK15422 septal ring assembly 32.6 3E+02 0.0064 26.2 8.2 55 308-362 12-66 (79)
133 KOG1003 Actin filament-coating 32.1 7.1E+02 0.015 27.3 22.3 119 151-303 85-203 (205)
134 KOG1103 Predicted coiled-coil 31.6 9.5E+02 0.021 28.6 15.9 21 238-258 111-132 (561)
135 KOG0612 Rho-associated, coiled 31.3 1.5E+03 0.033 30.8 48.5 38 807-845 1127-1164(1317)
136 PTZ00266 NIMA-related protein 31.2 5.2E+02 0.011 34.1 12.8 12 560-571 528-539 (1021)
137 PF05622 HOOK: HOOK protein; 30.6 17 0.00036 44.4 0.0 83 225-308 303-385 (713)
138 PF09738 DUF2051: Double stran 29.6 5.2E+02 0.011 29.5 11.2 57 485-541 104-160 (302)
139 KOG3859 Septins (P-loop GTPase 29.1 5.3E+02 0.011 30.0 11.0 52 239-293 350-401 (406)
140 COG1340 Uncharacterized archae 28.8 9.4E+02 0.02 27.7 30.7 24 459-482 133-156 (294)
141 PRK10884 SH3 domain-containing 28.3 4.2E+02 0.0091 28.5 9.8 53 84-136 118-170 (206)
142 PF09728 Taxilin: Myosin-like 28.1 9.3E+02 0.02 27.3 33.9 66 486-551 230-309 (309)
143 PF10234 Cluap1: Clusterin-ass 27.6 5.2E+02 0.011 29.1 10.6 85 256-343 156-244 (267)
144 PF14992 TMCO5: TMCO5 family 27.1 9.9E+02 0.021 27.3 13.8 64 196-260 37-100 (280)
145 PF05622 HOOK: HOOK protein; 26.9 21 0.00046 43.6 0.0 153 36-202 194-357 (713)
146 PRK10884 SH3 domain-containing 26.2 7.2E+02 0.016 26.8 11.0 22 333-354 144-165 (206)
147 PF15066 CAGE1: Cancer-associa 26.1 1.3E+03 0.028 28.4 21.7 85 319-407 406-490 (527)
148 PF02841 GBP_C: Guanylate-bind 26.1 9.2E+02 0.02 26.7 13.8 13 265-277 197-209 (297)
149 PRK15422 septal ring assembly 25.7 5.9E+02 0.013 24.3 9.6 60 326-389 6-65 (79)
150 PF09787 Golgin_A5: Golgin sub 25.6 1.2E+03 0.027 27.9 28.5 18 511-528 410-427 (511)
151 PF11068 YlqD: YlqD protein; 25.5 7.2E+02 0.016 25.2 10.4 73 484-572 18-90 (131)
152 cd07647 F-BAR_PSTPIP The F-BAR 24.2 9E+02 0.02 25.9 18.2 47 404-451 169-215 (239)
153 PF09789 DUF2353: Uncharacteri 23.6 1.2E+03 0.026 27.1 23.2 204 279-500 2-228 (319)
154 PF03904 DUF334: Domain of unk 23.5 1.1E+03 0.023 26.5 14.8 111 335-451 43-154 (230)
155 KOG4657 Uncharacterized conser 23.3 1.1E+03 0.024 26.5 11.9 68 104-171 50-117 (246)
156 KOG0946 ER-Golgi vesicle-tethe 23.3 1.8E+03 0.039 29.0 27.0 74 104-185 680-753 (970)
157 PF09744 Jnk-SapK_ap_N: JNK_SA 23.2 8.7E+02 0.019 25.3 12.6 67 229-301 84-157 (158)
158 PF05529 Bap31: B-cell recepto 21.6 5.3E+02 0.012 26.6 8.8 35 331-365 157-191 (192)
159 smart00502 BBC B-Box C-termina 21.2 6.3E+02 0.014 23.0 11.5 37 435-471 50-86 (127)
160 PF10498 IFT57: Intra-flagella 21.1 1.3E+03 0.028 26.9 12.6 145 166-313 187-337 (359)
161 PF11559 ADIP: Afadin- and alp 20.8 8.3E+02 0.018 24.2 12.7 70 99-171 81-150 (151)
162 PF04094 DUF390: Protein of un 20.7 1.9E+03 0.041 28.4 16.1 89 84-175 481-572 (828)
163 PRK06800 fliH flagellar assemb 20.2 6.2E+02 0.014 27.7 9.0 51 518-568 35-85 (228)
164 TIGR03545 conserved hypothetic 20.1 6.5E+02 0.014 30.9 10.3 93 258-361 164-256 (555)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.21 E-value=8.2e-05 Score=95.88 Aligned_cols=452 Identities=21% Similarity=0.266 Sum_probs=277.0
Q ss_pred HHHhHHHHHHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhh-------hhHHHHHHHHHhchHHHH
Q 002173 4 NAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADC-------EEKEREIIRERQSLSDRK 76 (956)
Q Consensus 4 ~a~kk~~EvEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Er-------ea~E~~i~kQRe~L~Ewe 76 (956)
.+++.+.++...+...+-.-+.+.+....+..+++++..--+++...+.-...|. ...+++|..+++.+..--
T Consensus 905 ~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ 984 (1930)
T KOG0161|consen 905 ELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLS 984 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666555554444444444444 444445555555555555
Q ss_pred HHHHHHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhh-------hhhHhHHHHHhhHHHH
Q 002173 77 KILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKS-------NLDLTLVSLLKREEAV 149 (956)
Q Consensus 77 KkLqe~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~-------dl~~rl~~L~~rEke~ 149 (956)
|.=...++++-+.+.-|...++.++.-.+...+.+-.|++....++.+.....+-+. ++...-..+..-....
T Consensus 985 kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~ 1064 (1930)
T KOG0161|consen 985 KEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQK 1064 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 555557888889999999999999999999999999998888888887777666552 2222222222233445
Q ss_pred HHHHHHHHHhHHhHHHHHHHhhhhh--hHHHHHHHHH-----------------hHHHHhhhhhhHHHHHHHHhhhHHHH
Q 002173 150 IEREASLQKKEQKLLVSQETLASKE--SNEIQKIIAN-----------------HESALRVKQSEFEAELAIKYKLAEDE 210 (956)
Q Consensus 150 ~~~~~~Le~KEkeLl~leEKL~aRE--~~EIQKLlde-----------------h~a~L~~KK~EFElElE~kRKs~eeE 210 (956)
..+...|.++|-+|..++.++..-. ....||.+.+ ..+.++..++++..+++....-+++-
T Consensus 1065 ~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1065 EELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888888776433 2233333332 23445556666666666666666665
Q ss_pred HHHHHHHH---HhhhhhhhhhHHHHHhhhhhHHHHHHHHH----HhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHH
Q 002173 211 IEKKRRAW---ELRDLDLGQREESLLEREHDLEVQSRALV----DKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK 283 (956)
Q Consensus 211 le~K~~~~---E~rEvel~h~Eekl~kREqaLe~k~~~lk----EKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~ 283 (956)
......-. .++|.++..+-..+.+-....+.++..+. +.=.+|.+-+..++.....+......++.+-..|..
T Consensus 1145 ~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ 1224 (1930)
T KOG0161|consen 1145 GGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAA 1224 (1930)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333333 34555555555444444444444443333 223345555555666566666666666666666666
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 002173 284 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 363 (956)
Q Consensus 284 eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~ 363 (956)
+-..+...++++++..-.++ .++.+.+.++.-...-++++..-.++|..|+..+=.|.++....+..|-..+..|+.
T Consensus 1225 ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~ 1301 (1930)
T KOG0161|consen 1225 ELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALES 1301 (1930)
T ss_pred HHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777775555 456666667777777777788888888888888888888888888888888888888
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHH
Q 002173 364 EWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQE 443 (956)
Q Consensus 364 EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerLK~EK~~~r~~~krelEsL~~ekEsF~~kM~hErs~~~eKiq~E 443 (956)
+-+.+ +.+|..| +..+-++..-+. ++..+.+.++.+|.-+.+....-.-. ..+-.-+=+.|-.|++..
T Consensus 1302 qle~~---k~qle~e----~r~k~~l~~~l~----~l~~e~~~l~e~leee~e~~~~l~r~-lsk~~~e~~~~~~k~e~~ 1369 (1930)
T KOG0161|consen 1302 QLEEL---KRQLEEE----TREKSALENALR----QLEHELDLLREQLEEEQEAKNELERK-LSKANAELAQWKKKFEEE 1369 (1930)
T ss_pred HHHHH---HHHHHHH----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 77766 3344433 344444443332 45556777777777777665421110 112222345555666666
Q ss_pred HHHhhhhhHhhhhhhHHHHHHHHHHHH
Q 002173 444 RADFLLGIEMQKRDLENCIEKRREELE 470 (956)
Q Consensus 444 rad~l~d~ElqkreLE~~iqkRqEEiE 470 (956)
..+-+-+++.-|+.|...++.-++.+|
T Consensus 1370 ~~~~~eelee~kk~l~~~lq~~qe~~e 1396 (1930)
T KOG0161|consen 1370 VLQRLEELEELKKKLQQRLQELEEQIE 1396 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 666566666666666555555555444
No 2
>PRK02224 chromosome segregation protein; Provisional
Probab=99.10 E-value=5.3e-05 Score=90.54 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 002173 331 IKLKEELDVVRAQKLEL 347 (956)
Q Consensus 331 seLKeEId~~R~Qke~L 347 (956)
.+|+++|...|.+...|
T Consensus 623 ~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 623 DERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555544444
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=98.87 E-value=0.00073 Score=81.03 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 002173 332 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 364 (956)
Q Consensus 332 eLKeEId~~R~Qke~LlkEad~LK~eKekFE~E 364 (956)
++...|+.++.+...|..+.++++.....++..
T Consensus 472 ~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~ 504 (880)
T PRK02224 472 EDRERVEELEAELEDLEEEVEEVEERLERAEDL 504 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666655555443
No 4
>PRK03918 chromosome segregation protein; Provisional
Probab=98.84 E-value=0.00088 Score=80.03 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002173 502 LEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQ 552 (956)
Q Consensus 502 ~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE 552 (956)
++.+..++..+.....++......+..+.-.+.++|+.+...-.+++...+
T Consensus 661 ~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l~~~~~ 711 (880)
T PRK03918 661 YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK 711 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444445555555555555555444444433333
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.83 E-value=0.0021 Score=83.49 Aligned_cols=483 Identities=18% Similarity=0.235 Sum_probs=263.0
Q ss_pred chhHHhhhhHHhhhhhhHHHHHHhHhh-------hhhhhHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHhhhhhhHhhH
Q 002173 29 YHRSAERKLQEVVAREDDLSRRIASFK-------ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHIL 101 (956)
Q Consensus 29 k~s~aeRKL~eVEaRE~~LrRerlSf~-------~Erea~E~~i~kQRe~L~EweKkLqe~eeRL~d~QrlLNqREE~~n 101 (956)
.+..+++.++++..|-......-.... .+|...++.+..--..+..|+...+..+.+|-..+--+++.++++.
T Consensus 902 ~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~ 981 (1930)
T KOG0161|consen 902 EKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENIS 981 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666655555444444 4444444444444455556776666667777666666666554444
Q ss_pred hhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhHHhHHHHHHHhhhhhhHHHHHH
Q 002173 102 SKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKI 181 (956)
Q Consensus 102 E~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKL 181 (956)
.-.+.-+. | +.-+.....+|...|+.+..+.....+-|..|.+++..|....+
T Consensus 982 kL~kekk~----l-----------------Ee~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~------ 1034 (1930)
T KOG0161|consen 982 KLSKEKKE----L-----------------EERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR------ 1034 (1930)
T ss_pred HHHHHHHH----H-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 33332222 2 23344455667778888888888889999999999998876554
Q ss_pred HHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhH
Q 002173 182 IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLE 261 (956)
Q Consensus 182 ldeh~a~L~~KK~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LK 261 (956)
.+.-++..++.||.++-..+-++++ +..++.++ ...+.+++-.|..-..++.+....+....+.++
T Consensus 1035 ---~r~e~Ek~~rkle~el~~~~e~~~~-~~~~~~el----------~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~ 1100 (1930)
T KOG0161|consen 1035 ---IRMELEKAKRKLEGELKDLQESIEE-LKKQKEEL----------DNQLKKKESELSQLQSKLEDEQAEVAQLQKQIK 1100 (1930)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHH----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2333557788888888555555544 55554443 333444444444444444444455555555555
Q ss_pred HHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----------HHHHHhhh-hhhhhhhhhHHHHH
Q 002173 262 EKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQ----------VNCAKDKL-EAMKSEAGELSVLE 330 (956)
Q Consensus 262 EkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~q----------i~ee~E~L-kiteeER~E~lrLQ 330 (956)
+-...+.-....|+.++....+-......|..+++.+.-.++++... -..+..+| ..+++++..+-..=
T Consensus 1101 eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~ 1180 (1930)
T KOG0161|consen 1101 ELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQI 1180 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55444444445555555554444444444444444444433333111 11111122 12233333332222
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---HHHHHHH
Q 002173 331 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL---RQERDAM 407 (956)
Q Consensus 331 seLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerL---K~EK~~~ 407 (956)
..|+ -++.-....|..=.|+|+..|++++++-..|+.-...+.-++..+.-.+..++++-+.=+.+| ...-+.+
T Consensus 1181 ~~lr---~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~ 1257 (1930)
T KOG0161|consen 1181 EELR---KKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQ 1257 (1930)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 223333445666678999999999999999999999999999988888877777663222222 1111222
Q ss_pred HHHH---HhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHH---HHHHHHH
Q 002173 408 RDQH---KRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFR---EREKAFE 481 (956)
Q Consensus 408 r~~~---krelEsL~~ekEsF~~kM~hErs~~~eKiq~Erad~l~d~ElqkreLE~~iqkRqEEiE~~L~---EREk~FE 481 (956)
.++. -...--+..+-..|.. ...|.-...+.+....+.|...|+.-++.|+.....+.. +...++ .=-..+.
T Consensus 1258 ~~~~~~l~~q~~~l~~E~~~l~~-~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~-l~~~l~~l~~e~~~l~ 1335 (1930)
T KOG0161|consen 1258 ERLRNDLTAKRSRLQNENEELSR-QLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSA-LENALRQLEHELDLLR 1335 (1930)
T ss_pred HHHHHHHHHHHHHhhhhHHHHhh-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 1111 0111122222222222 223444467778888888888888888888876655432 222222 1122344
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH----HHHHhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 002173 482 EEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE----RMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHAD 557 (956)
Q Consensus 482 eek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekE----R~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~E 557 (956)
+..+-+.+.+|-|--.+.+-.-++.--+.+++.. -.++..-++++.....++..-|+.+...--+|.+.|-.+..+
T Consensus 1336 e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~e 1415 (1930)
T KOG0161|consen 1336 EQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQE 1415 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4445555555544433333333333333333332 235556666667777777777777777777777666665444
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.77 E-value=0.0025 Score=80.64 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=40.8
Q ss_pred HHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHhHHHHH
Q 002173 13 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 90 (956)
Q Consensus 13 EaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLqe~eeRL~d~Q 90 (956)
...+.+....+.+++.....+.+.+..++..-..++++.-....+..++...|. +=....+.+..|.+.+..|-..+
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-DVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555555555555555555555555555 11244555555555555555555
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.65 E-value=0.0034 Score=75.65 Aligned_cols=50 Identities=22% Similarity=0.233 Sum_probs=20.0
Q ss_pred hHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHH
Q 002173 31 RSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQ 80 (956)
Q Consensus 31 s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLq 80 (956)
..+...+.++...-..++........+....+..+...+..+..++..+.
T Consensus 263 ~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~ 312 (1179)
T TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333333333333334444444444444444444444444433333333
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=0.0095 Score=75.57 Aligned_cols=55 Identities=24% Similarity=0.180 Sum_probs=36.2
Q ss_pred hHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHH
Q 002173 103 KLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQ 157 (956)
Q Consensus 103 ~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le 157 (956)
-.+.+..+.++|..++..+......+..-+..+..-...|...++++.+....+.
T Consensus 575 l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~ 629 (1311)
T TIGR00606 575 LEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF 629 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677777777777777777777766666666666666666666665554444
No 9
>PRK03918 chromosome segregation protein; Provisional
Probab=98.55 E-value=0.006 Score=73.13 Aligned_cols=15 Identities=20% Similarity=0.284 Sum_probs=7.8
Q ss_pred ccccCCCcccccCCC
Q 002173 696 RYSFGEPKVILEVPS 710 (956)
Q Consensus 696 ~ysf~~~~v~~evp~ 710 (956)
.|-|++|...++++.
T Consensus 815 ~lilDEp~~~lD~~~ 829 (880)
T PRK03918 815 LLILDEPTPFLDEER 829 (880)
T ss_pred eEEEeCCCcccCHHH
Confidence 455566655444443
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.48 E-value=0.0095 Score=71.98 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=36.5
Q ss_pred hHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHH
Q 002173 37 LQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEA 116 (956)
Q Consensus 37 L~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLqe~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEe 116 (956)
+..+.+.-..++.+.-....+....+..+......+...+..+...+..+......++.-...+......+...+..+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 320 (1179)
T TIGR02168 241 LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEE 320 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444433334444444444444444444444444444444444444444444444
Q ss_pred HhhchH
Q 002173 117 SRANVE 122 (956)
Q Consensus 117 akkkie 122 (956)
.+..++
T Consensus 321 l~~~~~ 326 (1179)
T TIGR02168 321 LEAQLE 326 (1179)
T ss_pred HHHHHH
Confidence 443333
No 11
>PRK01156 chromosome segregation protein; Provisional
Probab=98.38 E-value=0.016 Score=70.29 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=20.5
Q ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Q 002173 523 RQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 570 (956)
Q Consensus 523 ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vEklK~ 570 (956)
...+..+...++.+|..|...-..|+++-..+..+...+..+++.++.
T Consensus 683 ~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~ 730 (895)
T PRK01156 683 LKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433333333344334333333
No 12
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.34 E-value=0.027 Score=71.18 Aligned_cols=207 Identities=14% Similarity=0.274 Sum_probs=151.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 002173 322 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLR 401 (956)
Q Consensus 322 ER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerLK 401 (956)
++.+|......|.+++..+..+...+.+....+..+.......-+.+...-+..+-+++..-.....+-.-......++.
T Consensus 594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999988888888888888888888888777777777666666677777777
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 002173 402 QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE 481 (956)
Q Consensus 402 ~EK~~~r~~~krelEsL~~ekEsF~~kM~hErs~~~eKiq~Erad~l~d~ElqkreLE~~iqkRqEEiE~~L~EREk~FE 481 (956)
..+..-+..+...+..|..+-..| ..++..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~----~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQL----KQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777877777777666555 3455666666666666666666666666666666666666666665555555
Q ss_pred HH-------HHHHhhh--hhh-HHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHH
Q 002173 482 EE-------KMREFQQ--ISS-LKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE 532 (956)
Q Consensus 482 ee-------k~~EL~~--IN~-lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aE 532 (956)
.+ ...+|.. |+- .-..++.+++.+.-++.+++.-|..|..=+.=+...|..
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 43 3344432 121 445667888889999999999888888777766666654
No 13
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.02 E-value=0.086 Score=64.39 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002173 337 LDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 387 (956)
Q Consensus 337 Id~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE 387 (956)
++.++.+...+..+...|..+.......|..+......+..+...+..+..
T Consensus 690 l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~ 740 (1164)
T TIGR02169 690 LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE 740 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444334444443333333
No 14
>PRK01156 chromosome segregation protein; Provisional
Probab=97.89 E-value=0.14 Score=62.46 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002173 496 EKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLL 554 (956)
Q Consensus 496 E~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~ 554 (956)
.....++..+..+..++..+...+..+...+.....++..+|..|..--.++.+....+
T Consensus 670 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l 728 (895)
T PRK01156 670 KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESM 728 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34456667777777777777777777777777777777777776665444555544443
No 15
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.038 Score=66.77 Aligned_cols=216 Identities=24% Similarity=0.344 Sum_probs=127.8
Q ss_pred hhhhhhHH---HHHHHHhhhHHHHHHHHHHHHHhhhhh---hhhhH--HHHHhhhhhHHHHHHHHHHhhhhHH-HHhhhh
Q 002173 190 RVKQSEFE---AELAIKYKLAEDEIEKKRRAWELRDLD---LGQRE--ESLLEREHDLEVQSRALVDKEKDLV-ERSHLL 260 (956)
Q Consensus 190 ~~KK~EFE---lElE~kRKs~eeEle~K~~~~E~rEve---l~h~E--ekl~kREqaLe~k~~~lkEKEkdL~-~Ksk~L 260 (956)
|.|+-.|+ +|||.+|+.+++.-...+..++++|.+ -+.+| ++=.|++-+|++++++--+.|..-+ .+-+.+
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555665 788888888888777777666666543 22222 3344555667777777666654322 223333
Q ss_pred HHHHhhhHHHHHH--hHHH-------HHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 002173 261 EEKENKLIAFEKE--ADLK-------KSLLQKEKEEVNIIK---SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSV 328 (956)
Q Consensus 261 KEkEksLkaeEK~--Le~e-------K~qL~~eKEei~~lK---~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lr 328 (956)
..+|-.-+-.||. ++-+ .+|...+.+.|-.++ ..++--+..|..+++++..--....+-.
T Consensus 396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~-------- 467 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI-------- 467 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc--------
Confidence 3333322222221 1111 122223333333332 2334444445555555554444333222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------------hh
Q 002173 329 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL-------------KD 395 (956)
Q Consensus 329 LQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~-------------~~ 395 (956)
..-|++|+.++-|.+..+.|.+.|+++.. +++.-+.+++-||..|..-+ ++
T Consensus 468 --tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 468 --TTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred --chHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 34689999999999999999999998754 34444455555555554322 56
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q 002173 396 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKM 429 (956)
Q Consensus 396 EeerLK~EK~~~r~~~krelEsL~~ekEsF~~kM 429 (956)
+-+++...|+.++.+++-.++.|+-+.+|=.+.|
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~ei 565 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEI 565 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7778888899999999999999998888877776
No 16
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.68 E-value=0.23 Score=58.77 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=41.6
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhhHhHH
Q 002173 527 DREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAV 578 (956)
Q Consensus 527 e~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vEklK~ckncg~~~ 578 (956)
.=+.+|-++.|.+|+.-=+-+++-.|+|..++-.++..|++|.. .+|.+.
T Consensus 409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~--r~~~~~ 458 (546)
T PF07888_consen 409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ--RLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhh
Confidence 34788999999999998899999999999999999999998863 344444
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.59 E-value=0.48 Score=60.09 Aligned_cols=79 Identities=28% Similarity=0.308 Sum_probs=42.0
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002173 308 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVER 386 (956)
Q Consensus 308 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eEr 386 (956)
++..-...+.....+...+..-...+...|..+|.+-..+....+.++.+-...+.+|+.+...+..+..+...+.++.
T Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 753 (1163)
T COG1196 675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEEL 753 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555555555556666666666666666666665555555555555555555555544444433
No 18
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.42 E-value=0.61 Score=57.24 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002173 336 ELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER 381 (956)
Q Consensus 336 EId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~ 381 (956)
+|..+..+...|..+.+.+..+....+.++..+......+......
T Consensus 675 ~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~ 720 (1164)
T TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444443333
No 19
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.05 E-value=1.8 Score=55.23 Aligned_cols=109 Identities=27% Similarity=0.324 Sum_probs=62.8
Q ss_pred hHHHHHHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhH------hhhhhhhHHHHHHHHHhchHHHHHHHH
Q 002173 7 KKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIAS------FKADCEEKEREIIRERQSLSDRKKILQ 80 (956)
Q Consensus 7 kk~~EvEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlS------f~~Erea~E~~i~kQRe~L~EweKkLq 80 (956)
++..+++.+|..+...++ .++-.+.+++.+=+.|++++-. ..+++..++..+.. -.+..+.+.|.
T Consensus 172 ~r~~ea~~~L~~~~~nl~-------~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~--~~~~~~~~~l~ 242 (1163)
T COG1196 172 ERKEEAERKLERTEENLE-------RLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLL--AKLKELRKELE 242 (1163)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 344445555555544444 4555666666666666666544 34555555555433 34555666666
Q ss_pred HHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHH
Q 002173 81 QEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEK 124 (956)
Q Consensus 81 e~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~ 124 (956)
.-.+.|...+..+..=...+.+....+..+...+++....+...
T Consensus 243 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 243 ELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777666666666666666666666666666555555444
No 20
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.05 E-value=0.00014 Score=88.40 Aligned_cols=303 Identities=22% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHH---HHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHH
Q 002173 186 ESALRVKQSEFEAELAIKYKLAEDEIEKKRRA---WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEE 262 (956)
Q Consensus 186 ~a~L~~KK~EFElElE~kRKs~eeEle~K~~~---~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKE 262 (956)
+..|..+.+..+.+++..+..++++-.+|... +..-..+|..|-.++ +.......+.|.+--+.|..++..+.+
T Consensus 259 k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~---e~e~~~~~EelEeaKKkL~~~L~el~e 335 (859)
T PF01576_consen 259 KQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKY---EEEAEQRTEELEEAKKKLERKLQELQE 335 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888888888887776542 233344444443332 334444455566666677777777777
Q ss_pred HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 002173 263 KENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS---SLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDV 339 (956)
Q Consensus 263 kEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra---~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~ 339 (956)
.-..+.+.--.|+.-+..|..+-+.+.. +|++..+ .++....+++.....++.- ...+..+.|.
T Consensus 336 ~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~~~~~LeKKqr~fDk~l~e~k~~----------~~~~~~e~d~ 402 (859)
T PF01576_consen 336 QLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQAAAAELEKKQRKFDKQLAEWKAK----------VEELQAERDA 402 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------HHHHHHHHHH
Confidence 7777777777777777888877666553 5555444 5555556665544433322 1356667777
Q ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 002173 340 VRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN 419 (956)
Q Consensus 340 ~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerLK~EK~~~r~~~krelEsL~ 419 (956)
.-.....+..++-.|+.+.......|+.+.-....|+-|+..+..+.-...+-++ +-++.+.....-.+..+..++-+.
T Consensus 403 ~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr~LE~e~~El~~~leE~E 481 (859)
T PF01576_consen 403 AQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKRRLEQEKEELQEQLEEAE 481 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888888888888888888888877777888888777666544443332 222222211111111222222221
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 002173 420 REREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAE 499 (956)
Q Consensus 420 ~ekEsF~~kM~hErs~~~eKiq~Erad~l~d~ElqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~ 499 (956)
+-+...|-.+.-|+..|+.-+-++++.|.+|+..|+..|..=...|-+|..-+.
T Consensus 482 --------------------------~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE 535 (859)
T PF01576_consen 482 --------------------------DALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELE 535 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHH
Confidence 112334555667888888889999999999999999877654444444433332
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHHH
Q 002173 500 KELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMV 542 (956)
Q Consensus 500 kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ 542 (956)
.| -+.|.++.-.|++|+.+..+|.-.++..+-
T Consensus 536 ~E-----------~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~ 567 (859)
T PF01576_consen 536 EE-----------RKERAEALREKKKLESDLNELEIQLDHANR 567 (859)
T ss_dssp -------------------------------------------
T ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 22 233445555555555555555444444433
No 21
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.97 E-value=0.29 Score=51.67 Aligned_cols=170 Identities=20% Similarity=0.199 Sum_probs=101.6
Q ss_pred hHHHhHHHHHHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHH
Q 002173 3 ENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE 82 (956)
Q Consensus 3 e~a~kk~~EvEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLqe~ 82 (956)
..|..++.+++.++..|++-.+-++|+-..++-.|..++.|=.......-.+....+..+..+..-...+..-.-++.+.
T Consensus 18 ~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~l 97 (237)
T PF00261_consen 18 EEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEEL 97 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45566666677777777777777777777776666666666666666665555555555544444444444445666666
Q ss_pred HHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhHHh
Q 002173 83 HERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQK 162 (956)
Q Consensus 83 eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KEke 162 (956)
+.+|-.....+..-+.+.-+..+-|...+.+|+.+...++..-..+.+-+..|..--.+|-.-|-.....-...+.-|..
T Consensus 98 E~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~ 177 (237)
T PF00261_consen 98 EQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEK 177 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 77777777777777777777777777777777777777666655555555544433333332222222222223444444
Q ss_pred HHHHHHHhhh
Q 002173 163 LLVSQETLAS 172 (956)
Q Consensus 163 Ll~leEKL~a 172 (956)
+..|..+|..
T Consensus 178 i~~L~~~lke 187 (237)
T PF00261_consen 178 IRDLEEKLKE 187 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.85 E-value=1.7 Score=51.84 Aligned_cols=95 Identities=18% Similarity=0.196 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 002173 331 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 410 (956)
Q Consensus 331 seLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerLK~EK~~~r~~ 410 (956)
+++-+|...+.+..+..-.++.+|+.++.+-+. .|+|+|.+=++=...|+.++..= +++-+|..|.-.|..++=.-
T Consensus 353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~lrv 428 (546)
T PF07888_consen 353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSLRV 428 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 455555555555444444567778888877776 68899888777777776665443 67888888888886666555
Q ss_pred HHhhhhhhhhhHHHHHHhh
Q 002173 411 HKRDVDSLNREREEFMNKM 429 (956)
Q Consensus 411 ~krelEsL~~ekEsF~~kM 429 (956)
.+.+-|.|..++-..|.-|
T Consensus 429 ~qkEKEql~~EkQeL~~yi 447 (546)
T PF07888_consen 429 AQKEKEQLQEEKQELLEYI 447 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666665555555444
No 23
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.73 E-value=2.6 Score=52.25 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=18.2
Q ss_pred hhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHH
Q 002173 227 QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIA 269 (956)
Q Consensus 227 h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLka 269 (956)
.....+....+.++.....+.+.+..|+..-..++..+..+..
T Consensus 400 ~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 400 ELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444433333
No 24
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.62 E-value=1.2 Score=47.03 Aligned_cols=234 Identities=20% Similarity=0.255 Sum_probs=143.0
Q ss_pred hHHHHHHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHhH
Q 002173 7 KKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERL 86 (956)
Q Consensus 7 kk~~EvEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLqe~eeRL 86 (956)
||+..+...+-.|.-.+..+..+-..+...+..+++.=..|.|.+-....+.+. --+.|..-..+|...+.++
T Consensus 1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~-------~eerL~~~~~kL~~~e~~~ 73 (237)
T PF00261_consen 1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELER-------AEERLEEATEKLEEAEKRA 73 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-------HHCCCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666667777777888888888877766655554 4456677777777777777
Q ss_pred HHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhHHhHHHH
Q 002173 87 LDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVS 166 (956)
Q Consensus 87 ~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KEkeLl~l 166 (956)
-+..+.+..=+.+....+.-+..++..|.+++...+..-..+.+-...|..--..|.--|.-++..++.+...|.+|..+
T Consensus 74 de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~ 153 (237)
T PF00261_consen 74 DESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSV 153 (237)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 77777777777777777888888888888888877777666665555555555556666666666666666666666655
Q ss_pred HHHhhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHH
Q 002173 167 QETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRAL 246 (956)
Q Consensus 167 eEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~l 246 (956)
-..|-+=|-.+-+ ...+ +-.++.+=+.|..-|..=..-++--|..+...|..+..-+-.|..-..+.
T Consensus 154 ~~~lk~lE~~~~~---------~~~r----e~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 154 GNNLKSLEASEEK---------ASER----EDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHH---------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh---------hhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555433322110 1111 12222222333333433334444445555556666666666666666666
Q ss_pred HHhhhhHHHHhhhh
Q 002173 247 VDKEKDLVERSHLL 260 (956)
Q Consensus 247 kEKEkdL~~Ksk~L 260 (956)
+....+|+.-+..|
T Consensus 221 ~~~~~eld~~l~el 234 (237)
T PF00261_consen 221 KKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666555443
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.58 E-value=3.7 Score=52.11 Aligned_cols=69 Identities=25% Similarity=0.266 Sum_probs=38.8
Q ss_pred HHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhhHh
Q 002173 508 EIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKI 576 (956)
Q Consensus 508 E~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vEklK~ckncg~ 576 (956)
+...++.+-.+|...-+.++..-+.+-+-=+++..+....+.-.+.|-+.|..|--.+.+|-.+++=.-
T Consensus 732 ~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~ 800 (1074)
T KOG0250|consen 732 DISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELK 800 (1074)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555544444434444444555556667777777777777776666554333
No 26
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.47 E-value=3.8 Score=50.92 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002173 325 ELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 382 (956)
Q Consensus 325 E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I 382 (956)
.+..+..+|+.-.+.++.-. ....+.++++..-..+..-|..|...-..++......
T Consensus 563 ~le~~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 563 QLEDRLQELKELLEELRLLR-TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444443333332 2223333343333344444444444444444444333
No 27
>PRK12704 phosphodiesterase; Provisional
Probab=96.29 E-value=0.19 Score=59.06 Aligned_cols=76 Identities=25% Similarity=0.341 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 002173 193 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 272 (956)
Q Consensus 193 K~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK 272 (956)
+.+++.|+...|..++.++..+ +.+|..+|..|.+|+..|+.+.+.|..++..|..+-+.|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555565555555443 444555566677777777777777777777777776666666666665555
Q ss_pred HhH
Q 002173 273 EAD 275 (956)
Q Consensus 273 ~Le 275 (956)
+++
T Consensus 132 ~~~ 134 (520)
T PRK12704 132 ELE 134 (520)
T ss_pred HHH
Confidence 553
No 28
>PRK11637 AmiB activator; Provisional
Probab=96.21 E-value=2.1 Score=48.62 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=21.1
Q ss_pred HHhhHHHHHHHHHHHHHhHHhHHHHHHHhhhhhhHHHHHHHHHhH
Q 002173 142 LLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHE 186 (956)
Q Consensus 142 L~~rEke~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~ 186 (956)
|...+.++...+..+...+.+|..++.+|..+...-=+.+-+-+.
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555555544433333333343
No 29
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.07 E-value=8.4 Score=50.98 Aligned_cols=107 Identities=15% Similarity=0.213 Sum_probs=63.0
Q ss_pred HhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHhh
Q 002173 14 AKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLL 93 (956)
Q Consensus 14 aKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLqe~eeRL~d~QrlL 93 (956)
.|+..|..++..+..+...++..+.+++.|...|++++-....-....+ ++...-..+..+...+.+...++......+
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeL 371 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVV 371 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666677777777777777777777777777766654333322 223333445555555555555555555555
Q ss_pred hhhhHhhHhhHHHhhHhHHHHHHHhhch
Q 002173 94 NEREDHILSKLQELSRKEKELEASRANV 121 (956)
Q Consensus 94 NqREE~~nE~d~~lk~kEkeLEeakkki 121 (956)
.+-.+.+.+....+...+.++..++..+
T Consensus 372 eeleeeleeleeEleelEeeLeeLqeqL 399 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDELKSQL 399 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555444433
No 30
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.98 E-value=6.5 Score=48.87 Aligned_cols=353 Identities=19% Similarity=0.265 Sum_probs=210.8
Q ss_pred hHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHH--------------------HHHhhHHHHHHHHHHHHHhHHhHHHHH
Q 002173 108 SRKEKELEASRANVEEKFKALNEEKSNLDLTLV--------------------SLLKREEAVIEREASLQKKEQKLLVSQ 167 (956)
Q Consensus 108 k~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~--------------------~L~~rEke~~~~~~~Le~KEkeLl~le 167 (956)
..+.+.||+++..|+.-..+|-...+.|..-.. .+.-.|-.+..++..|+.+|++...+-
T Consensus 131 ~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r 210 (775)
T PF10174_consen 131 ERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEAR 210 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344455666666555555544444444433333 334445566677888888888886664
Q ss_pred HHhhh-----hhh---HHHHHHHHHhHHHHhhhhhhH-------HHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 002173 168 ETLAS-----KES---NEIQKIIANHESALRVKQSEF-------EAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESL 232 (956)
Q Consensus 168 EKL~a-----RE~---~EIQKLldeh~a~L~~KK~EF-------ElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl 232 (956)
+.|-- +.. ..+|++|+.- +++...| |.|+...+..++---. -++-..++++........
T Consensus 211 ~~l~~~~~~~~~~a~t~alq~~ie~K----d~ki~~lEr~l~~le~Ei~~L~~~~~~~~~--~r~~~~k~le~~~s~~~~ 284 (775)
T PF10174_consen 211 EQLHRRLQMERDDAETEALQTVIEEK----DTKIASLERMLRDLEDEIYRLRSRGELSEA--DRDRLDKQLEVYKSHSLA 284 (775)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccccccc--chHHHHHHHHHHHhhHHH
Confidence 43322 222 2467887764 3444555 4444444433321111 112222233333333333
Q ss_pred HhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 002173 233 LEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCA 312 (956)
Q Consensus 233 ~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee 312 (956)
.|.- ++.-.=.|..+.-.+.+...-|.-....-.....-|+.=+..|-+--.....|..|++-++..++..-.++...
T Consensus 285 mK~k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk 362 (775)
T PF10174_consen 285 MKSK--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKK 362 (775)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3321 33334445566666666666666666666666777777788888888888999999999999999999999999
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHH------------HHHH
Q 002173 313 KDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR------------KEAE 380 (956)
Q Consensus 313 ~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~------------KEa~ 380 (956)
+..+..+++|.+-+..==.+|+..+|.+=..-..|.+.+|.|...-..= =-.|++-++.|. -.++
T Consensus 363 ~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ek---d~ql~~~k~Rl~~~~d~~~~~~~~~~lE 439 (775)
T PF10174_consen 363 QAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREK---DRQLDEEKERLSSQADSSNEDEALETLE 439 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccccccchHHHHHHHH
Confidence 9999999988776554445566666666666666666665555333211 112233333333 3333
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhh---
Q 002173 381 RVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRD--- 457 (956)
Q Consensus 381 ~I~eErE~lek~~~~EeerLK~EK~~~r~~~krelEsL~~ekEsF~~kM~hErs~~~eKiq~Erad~l~d~Elqkre--- 457 (956)
.-.-+++.+-.-+...+++.-.++..--+.|++++..+...-++|-..+ ||+..-+.-++.+-+.|.-+.+-+..+
T Consensus 440 ea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL-sEk~~~l~~~kee~s~l~s~~~K~~s~i~~ 518 (775)
T PF10174_consen 440 EALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL-SEKELQLEDAKEEASKLASSQEKKDSEIER 518 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHhhccchhhhHHHH
Confidence 4444444444444444444444554444677888888888888887766 788877777777777777666665554
Q ss_pred hHHHHHHHHHHHHhH
Q 002173 458 LENCIEKRREELESS 472 (956)
Q Consensus 458 LE~~iqkRqEEiE~~ 472 (956)
|++.+++.++++++-
T Consensus 519 l~I~lEk~rek~~kl 533 (775)
T PF10174_consen 519 LEIELEKKREKHEKL 533 (775)
T ss_pred HHHHHHHhhhHHHHH
Confidence 446666667666543
No 31
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.86 E-value=0.39 Score=56.37 Aligned_cols=75 Identities=29% Similarity=0.356 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 002173 193 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 272 (956)
Q Consensus 193 K~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK 272 (956)
+.+++.|+...|..++.++..+.. +|..+|..|.+|+..|+.+.+.|..+++.|+.+.+.|..+++.|....+
T Consensus 53 ~~EaeeE~~~~R~Ele~el~~~e~-------rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~ 125 (514)
T TIGR03319 53 LLEAKEEVHKLRAELERELKERRN-------ELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555566666555544444 4555556666666666666666666666666666666666665555554
Q ss_pred Hh
Q 002173 273 EA 274 (956)
Q Consensus 273 ~L 274 (956)
++
T Consensus 126 e~ 127 (514)
T TIGR03319 126 EL 127 (514)
T ss_pred HH
Confidence 44
No 32
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.84 E-value=1.9 Score=47.65 Aligned_cols=167 Identities=20% Similarity=0.176 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 002173 239 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 318 (956)
Q Consensus 239 Le~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~Lki 318 (956)
+=+...++..|..=++=+++.+..--..|...-..|......|.+..+.+..+...+....+.+..+...+...... +
T Consensus 126 ~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~ 203 (325)
T PF08317_consen 126 LVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--I 203 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h
Confidence 33445555566666666666666666666555555555555555555555555555555555555555544444333 2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002173 319 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 398 (956)
Q Consensus 319 teeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~Eee 398 (956)
..-+..++ ..||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=.+|-.
T Consensus 204 ~~~D~~eL----~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~ 279 (325)
T PF08317_consen 204 ESCDQEEL----EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVK 279 (325)
T ss_pred hhcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 22334444 34667777777888888888999999999999999999999999999999999999989999999999
Q ss_pred hhHHHHHHHHHHH
Q 002173 399 SLRQERDAMRDQH 411 (956)
Q Consensus 399 rLK~EK~~~r~~~ 411 (956)
+||..-+.++...
T Consensus 280 ~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 280 RLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887654
No 33
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.71 E-value=9.5 Score=48.73 Aligned_cols=114 Identities=17% Similarity=0.260 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH-HHHHHHHHHhHHhhHHHHH
Q 002173 278 KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEEL-DVVRAQKLELMVETDKLQL 356 (956)
Q Consensus 278 K~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEI-d~~R~Qke~LlkEad~LK~ 356 (956)
+..-..-.++|..++.++...+-...+-+.+|++.+.+....+.+...+-+.=..++.+. ..+-.+..++..+...|+.
T Consensus 329 ~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~ 408 (1074)
T KOG0250|consen 329 KDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKK 408 (1074)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 333344455666666666666666666666677777777766666666666555555555 4555556666666666777
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002173 357 EKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK 391 (956)
Q Consensus 357 eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek 391 (956)
+.++||-.-..|-++..++..++..+-+++..++.
T Consensus 409 evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~ 443 (1074)
T KOG0250|consen 409 EVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEG 443 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 77777776667777777777776666666665543
No 34
>PRK00106 hypothetical protein; Provisional
Probab=95.55 E-value=1.1 Score=53.33 Aligned_cols=75 Identities=27% Similarity=0.297 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 002173 193 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 272 (956)
Q Consensus 193 K~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK 272 (956)
+.+++.|+...|..++.++...+.. +..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.|....+
T Consensus 74 ~lEaeeEi~~~R~ElEkel~eEr~r-------L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~ 146 (535)
T PRK00106 74 LLEAKEEARKYREEIEQEFKSERQE-------LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREE 146 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555444433 444444555555555555555555555555555555555555544444
Q ss_pred Hh
Q 002173 273 EA 274 (956)
Q Consensus 273 ~L 274 (956)
++
T Consensus 147 ~~ 148 (535)
T PRK00106 147 QV 148 (535)
T ss_pred HH
Confidence 44
No 35
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.49 E-value=4.5 Score=43.54 Aligned_cols=232 Identities=21% Similarity=0.346 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHH
Q 002173 332 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDSLRQERDAMR 408 (956)
Q Consensus 332 eLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek---~~~~EeerLK~EK~~~r 408 (956)
.|...||.+-.++--|..+.+.|+.+...|..-|+..-..+..++.+...+...-..... .+.+.-..|+.+.+-++
T Consensus 58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 58 ELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 344677777777777777777888888888888887777777777666655544333322 24456778888888888
Q ss_pred HHHHhhhhhhhhhHH-HHHHhhhh-hhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002173 409 DQHKRDVDSLNRERE-EFMNKMVH-EHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR 486 (956)
Q Consensus 409 ~~~krelEsL~~ekE-sF~~kM~h-Ers~~~eKiq~Erad~l~d~ElqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~ 486 (956)
..|..++..|...-. .+-..|.. -...+..-+..=| ...+..+.+-+.++|..++-+-......-..
T Consensus 138 ~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR-----------~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~ 206 (312)
T PF00038_consen 138 QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR-----------AQYEEIAQKNREELEEWYQSKLEELRQQSEK 206 (312)
T ss_dssp HHHHHHHHTTSTT----------------HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccccceeecccccccchhhhhhHH-----------HHHHHHHhhhhhhhhhhcccccccccccccc
Confidence 888888888877553 22222211 0122222233333 3444455555555555555554444433333
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002173 487 EFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE-LMVQRQKLEEQRQLLHADREEIQAES 565 (956)
Q Consensus 487 EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIee-L~~ls~KLk~QRE~~~~ERe~f~~~v 565 (956)
--..+.+ +..|+-.++..+..|..+-.-+......|+.+..++....+. +......+......+..=|..+-.++
T Consensus 207 ~~~~~~~----~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 207 SSEELES----AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccch----hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 2222222 233444444445555555444444555555555555444332 22233444444444555566666666
Q ss_pred HHhhhhhhhHhHH
Q 002173 566 ERLKKLEDLKIAV 578 (956)
Q Consensus 566 EklK~ckncg~~~ 578 (956)
..|..+-|-+...
T Consensus 283 ~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 283 REYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 6666666665555
No 36
>PRK12704 phosphodiesterase; Provisional
Probab=95.11 E-value=0.31 Score=57.29 Aligned_cols=61 Identities=31% Similarity=0.342 Sum_probs=29.9
Q ss_pred HhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhh
Q 002173 203 KYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 266 (956)
Q Consensus 203 kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEks 266 (956)
.+..++.++...+.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.
T Consensus 58 ~~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~ 118 (520)
T PRK12704 58 ALLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKE 118 (520)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555554 44555566666666555544444444444444444444333333
No 37
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.99 E-value=0.33 Score=56.97 Aligned_cols=70 Identities=29% Similarity=0.291 Sum_probs=38.1
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 002173 202 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 274 (956)
Q Consensus 202 ~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~L 274 (956)
..+..+++++..++.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|..-++.|
T Consensus 51 e~~~EaeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eL 120 (514)
T TIGR03319 51 EALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNL 120 (514)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666666555 4455666667777666666555555555555555555544444444444433
No 38
>PRK00106 hypothetical protein; Provisional
Probab=94.76 E-value=1.4 Score=52.34 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=24.0
Q ss_pred CchhhhhhhccchhhhhhhhhhhccccccccchhhhhhccC
Q 002173 710 SENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRV 750 (956)
Q Consensus 710 ~~~~~~~~~~~~e~e~~~~~n~~~~~~~~~~~~~agrkrr~ 750 (956)
|+....++.-.|| ..||+.-.+ -.--++||||-=||
T Consensus 452 s~~~~i~rl~~lE----~ia~~~~gV-~~~yaiqaGREiRv 487 (535)
T PRK00106 452 SMENYIKRLRDLE----EIANSFDGV-QNSFALQAGREIRI 487 (535)
T ss_pred CHHHHHHHHHHHH----HHHhcCCcH-HHHHHHhcCCeEEE
Confidence 6677788888887 234444222 24467999999886
No 39
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.49 E-value=12 Score=43.26 Aligned_cols=92 Identities=20% Similarity=0.297 Sum_probs=54.2
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 002173 298 SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRK 377 (956)
Q Consensus 298 ~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~K 377 (956)
.++.++.++..+......++....+..++...-.+|...|..+|.....+..+...|+.+..+.+..=..+.++-.++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 45555555566666666555555566666555666666666766666666666666666666666664444455555555
Q ss_pred HHHHHHHHHHHH
Q 002173 378 EAERVAVERVVV 389 (956)
Q Consensus 378 Ea~~I~eErE~l 389 (956)
++..+..++..+
T Consensus 387 ~l~~~~~~~~~~ 398 (562)
T PHA02562 387 ELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHH
Confidence 544444444444
No 40
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.24 E-value=23 Score=45.52 Aligned_cols=295 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHH
Q 002173 202 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLL 281 (956)
Q Consensus 202 ~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL 281 (956)
++++++..|++..-..-+.-|+=....+++...-..-.==++=.+.-.-.++...+..++.-=.++...-..- -..+
T Consensus 181 ~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~---e~ei 257 (1141)
T KOG0018|consen 181 KKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKK---EREI 257 (1141)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHH---HHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 002173 282 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 361 (956)
Q Consensus 282 ~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekF 361 (956)
..-+.+.-++-.++.++=.-+..+..++.+-.+-+++-++= +.++.-|...........+.+..++..-++|
T Consensus 258 ~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~--------~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ 329 (1141)
T KOG0018|consen 258 RVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENA--------SHLKKRLEEIEKDIETAKKDYRALKETIERL 329 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhh--------ccchhHHHHhhhhHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhh---hhh
Q 002173 362 EAEWEMIDEKREELRKEAERVAVERV---VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHE---HSE 435 (956)
Q Consensus 362 E~EWE~LDEKR~eL~KEa~~I~eErE---~lek~~~~EeerLK~EK~~~r~~~krelEsL~~ekEsF~~kM~hE---rs~ 435 (956)
+++|..++-++++..+|.+.....|- ++..-..-|.+||+.+-...- ..+|+.|++...+=-++..|+ +.+
T Consensus 330 ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~---~~el~~ln~~~r~~~~~ld~~~~~~~e 406 (1141)
T KOG0018|consen 330 EKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA---LEELEVLNRNMRSDQDTLDHELERRAE 406 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 002173 436 WFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE 515 (956)
Q Consensus 436 ~~eKiq~Erad~l~d~ElqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekE 515 (956)
+.+++...+.+. ..+.+++..+.-...+-.+..++.+ ..+.-+-++...+..+.-+...|+...-..
T Consensus 407 lE~r~k~l~~sv------------er~~~~~~~L~~~i~s~~~~~~e~~-~d~~~l~~~~~~~~~~~~e~n~eL~~~~~q 473 (1141)
T KOG0018|consen 407 LEARIKQLKESV------------ERLDKRRNKLAAKITSLSRSYEELK-HDLDSLESLVSSAEEEPYELNEELVEVLDQ 473 (1141)
T ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q ss_pred HHHHhhhh
Q 002173 516 RMEINMDR 523 (956)
Q Consensus 516 R~Ei~~~k 523 (956)
--....++
T Consensus 474 l~das~dr 481 (1141)
T KOG0018|consen 474 LLDASADR 481 (1141)
T ss_pred HHhhhhhh
No 41
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=94.06 E-value=1.2 Score=46.33 Aligned_cols=70 Identities=33% Similarity=0.395 Sum_probs=45.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 002173 199 ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI 268 (956)
Q Consensus 199 ElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLk 268 (956)
++...|..++.++..++.++..+|..|..+|+.|..+...|+.+...|..++.+|..+...|..++..+.
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777888888888888777777666666666666666666655555555555555555555544444
No 42
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.86 E-value=23 Score=44.25 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 002173 282 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA 359 (956)
Q Consensus 282 ~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKe 359 (956)
...+-...-+|..+..+...+......|-.-+-+|+.+.+.=+++-.==..||..+-........|..++|.|+..-+
T Consensus 276 e~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle 353 (775)
T PF10174_consen 276 EVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLE 353 (775)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333344445566666666666666666666666666666665555444455677777777777888888887776533
No 43
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.80 E-value=27 Score=44.72 Aligned_cols=116 Identities=22% Similarity=0.286 Sum_probs=62.1
Q ss_pred HHhHHhHHHHHHHhhhhhhHHHHHHHHH---hHHHHhhhhhhHHH--HHHHHhhhHH-----HHHHHHHHHHHhhhhhhh
Q 002173 157 QKKEQKLLVSQETLASKESNEIQKIIAN---HESALRVKQSEFEA--ELAIKYKLAE-----DEIEKKRRAWELRDLDLG 226 (956)
Q Consensus 157 e~KEkeLl~leEKL~aRE~~EIQKLlde---h~a~L~~KK~EFEl--ElE~kRKs~e-----eEle~K~~~~E~rEvel~ 226 (956)
+.+|.-|.+++|+-..+++ |+.||.. -=-.|+.-|-+++. +|+..|++++ .|+..=+..++.-|.+..
T Consensus 170 erreeSlkim~ET~qK~ek--I~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~ 247 (1200)
T KOG0964|consen 170 ERREESLKIMEETKQKREK--INELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRS 247 (1200)
T ss_pred HhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 5567778888888888876 5666554 22333333444432 5777777765 333333333343333332
Q ss_pred ---hhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 002173 227 ---QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 274 (956)
Q Consensus 227 ---h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~L 274 (956)
..-..+.-+-....-.++.++..=+.|+.++..|.+--..+.+.+-++
T Consensus 248 ~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~ 298 (1200)
T KOG0964|consen 248 SAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKI 298 (1200)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222223333455566666667777777777555555554333
No 44
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.26 E-value=33 Score=44.03 Aligned_cols=299 Identities=23% Similarity=0.290 Sum_probs=168.8
Q ss_pred HHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchH---HHH
Q 002173 49 RRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE---EKF 125 (956)
Q Consensus 49 RerlSf~~Erea~E~~i~kQRe~L~EweKkLqe~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie---~~~ 125 (956)
++-++.--|-+-+...|..-=..+.++=.-|.+.-+-|..-|.+=++| + .-+++.-.++|-++...++ ..+
T Consensus 173 eeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~r--r----~lEYtiYdrEl~E~~~~l~~le~~r 246 (1200)
T KOG0964|consen 173 EESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKER--R----SLEYTIYDRELNEINGELERLEEDR 246 (1200)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH--h----hhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 344555566666777777766777777666666667777777665554 2 2234445555555554433 333
Q ss_pred HHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhHHhHHHHHH---HhhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHH
Q 002173 126 KALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE---TLASKESNEIQKIIANHESALRVKQSEFEAELAI 202 (956)
Q Consensus 126 ~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KEkeLl~leE---KL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~ 202 (956)
.+.-++-+++.. .+..++.+.......+...|..|..|-+ .+.+++..-+++. +.|..+..+|--+++-
T Consensus 247 ~~~~e~s~~~~~---~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~k-----t~lel~~kdlq~~i~~ 318 (1200)
T KOG0964|consen 247 SSAPEESEQYID---ALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKK-----TKLELKIKDLQDQITG 318 (1200)
T ss_pred hccchhhhhHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhhhHHHHHHhhh
Confidence 333444333332 3344555555555555555555554433 4455555444433 3444444444433332
Q ss_pred H---hhhHHHHHHHHHHHHHhhhhhhhhhH---HHHHhhhhhHHHHHHHHHHhhhhHHHH------hhhhHHHHhhhHHH
Q 002173 203 K---YKLAEDEIEKKRRAWELRDLDLGQRE---ESLLEREHDLEVQSRALVDKEKDLVER------SHLLEEKENKLIAF 270 (956)
Q Consensus 203 k---RKs~eeEle~K~~~~E~rEvel~h~E---ekl~kREqaLe~k~~~lkEKEkdL~~K------sk~LKEkEksLkae 270 (956)
- |++.-..+..=....+.++.++...+ ..+...|..+...+..+..+..||-+| ++.-+++++=|+.+
T Consensus 319 n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~e 398 (1200)
T KOG0964|consen 319 NEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSE 398 (1200)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHH
Confidence 1 11111111111111222222222221 123333444444455555555555443 34446677777776
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHh
Q 002173 271 EKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVE 350 (956)
Q Consensus 271 EK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkE 350 (956)
=..| +.-+..-++....+.-|++-+.+.+++...+|..-...+.-++..-.++...-..||++.|..-.....|--|
T Consensus 399 i~~l---~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWRE 475 (1200)
T KOG0964|consen 399 IEKL---KRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWRE 475 (1200)
T ss_pred HHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666 7778888888888888888888888877777777777777777777888888888888888876666677777
Q ss_pred hHHHHHHHHHHHHH
Q 002173 351 TDKLQLEKAKFEAE 364 (956)
Q Consensus 351 ad~LK~eKekFE~E 364 (956)
.-.|+..-++.+.+
T Consensus 476 E~~l~~~i~~~~~d 489 (1200)
T KOG0964|consen 476 EKKLRSLIANLEED 489 (1200)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777666665544
No 45
>PRK11637 AmiB activator; Provisional
Probab=92.69 E-value=22 Score=40.61 Aligned_cols=65 Identities=9% Similarity=0.097 Sum_probs=29.1
Q ss_pred HHHHHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHH
Q 002173 78 ILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSL 142 (956)
Q Consensus 78 kLqe~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L 142 (956)
.+.+.+..|.....-|+.-...++...+.+...+.++..++..|......|......+..++..+
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444444444444444444444444443
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.47 E-value=25 Score=40.70 Aligned_cols=98 Identities=27% Similarity=0.278 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 002173 277 KKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL 356 (956)
Q Consensus 277 eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~ 356 (956)
+...|.++...+.....+++.......+...++.+-...+....+. -..+..++..++...+.|.....++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~-------i~~~~~~~~~l~~ei~~l~~~~~~~~~ 379 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQS-------LITLVDKAKKVKAAIEELQAEFVDNAE 379 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhchHH
Confidence 4444444444444444444444443333333333333333332222 233666777777777777777888888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 002173 357 EKAKFEAEWEMIDEKREELRKEAER 381 (956)
Q Consensus 357 eKekFE~EWE~LDEKR~eL~KEa~~ 381 (956)
+....+.+|..+...++++.++...
T Consensus 380 ~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 380 ELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999876
No 47
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=92.18 E-value=0.041 Score=67.60 Aligned_cols=512 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhHHHhHHHHHHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhc-------hHH
Q 002173 2 VENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQS-------LSD 74 (956)
Q Consensus 2 ~e~a~kk~~EvEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~-------L~E 74 (956)
++..++....+|.+....++-++|++.+..+++|-+.++.+.-..|.-+.-.+....+..+..+..--.. |.+
T Consensus 168 l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLee 247 (859)
T PF01576_consen 168 LDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEE 247 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666777888888888888888877777777777776666666666666665555554443211111 111
Q ss_pred H--------------HHHHHHHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHh----hhhhhhh
Q 002173 75 R--------------KKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN----EEKSNLD 136 (956)
Q Consensus 75 w--------------eKkLqe~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lk----eke~dl~ 136 (956)
- ...|+..+.-+..++-.+..=.+-..+..+.|.....+|..|+++++....... +-+-.+.
T Consensus 248 lk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~ 327 (859)
T PF01576_consen 248 LKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLE 327 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1 122333333333333333333344555566777778888888888888766633 3333444
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHhHHhHHHHHHHhhhhhhHHHHHHHHHh---HHHHhhhhhhHHHHHHHHhhhHHHHHHH
Q 002173 137 LTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANH---ESALRVKQSEFEAELAIKYKLAEDEIEK 213 (956)
Q Consensus 137 ~rl~~L~~rEke~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh---~a~L~~KK~EFElElE~kRKs~eeEle~ 213 (956)
.+|.++...-.++...-..|++.=+ -|+.-+ ..+.--|+.+ .+.|+.|.+-|+..+..-+.-++...
T Consensus 328 ~~L~el~e~le~~~~~~~~LeK~k~---rL~~El-----eDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~-- 397 (859)
T PF01576_consen 328 RKLQELQEQLEEANAKVSSLEKTKK---RLQGEL-----EDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQ-- 397 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--
Confidence 4444444444443333333333111 111111 1111122222 34677888888888877766655432
Q ss_pred HHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhh-------hHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 002173 214 KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEK-------DLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 286 (956)
Q Consensus 214 K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEk-------dL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKE 286 (956)
..++.-..+....+..+.+-.++|+.....+...++ ++..=...+.+-.+++.. |+..+..|..++.
T Consensus 398 --~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~e----Lek~kr~LE~e~~ 471 (859)
T PF01576_consen 398 --AERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHE----LEKAKRRLEQEKE 471 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHH----HHHHHHHHHHHHH
Confidence 223333344445555555555555444444333322 222222223333333222 2222334444443
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh------------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHH
Q 002173 287 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE------------AMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKL 354 (956)
Q Consensus 287 ei~~lK~dlEK~ra~~e~qk~qi~ee~E~Lk------------iteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~L 354 (956)
++...=.+++-.+-..+..++.+.-+-+.++ -+++-|--|.+-=-.|..++|.=|..+..++..--+|
T Consensus 472 El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKL 551 (859)
T PF01576_consen 472 ELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKL 551 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333322222222222222222221111111 1111122222111222222233333333333333334
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH----------HhhhhhhhhhHHH
Q 002173 355 QLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH----------KRDVDSLNREREE 424 (956)
Q Consensus 355 K~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerLK~EK~~~r~~~----------krelEsL~~ekEs 424 (956)
..+..-.+.-|+...-=..++.|.++.+..+=.-+...+. .-....++++.+| +.+++.+....+.
T Consensus 552 E~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~le----e~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~ 627 (859)
T PF01576_consen 552 ESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELE----EAQRAREELREQLAVSERRLRALQAELEELREALEQ 627 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443344444444444444455544444433333322222 1111222222222 2333333333333
Q ss_pred HHH---hhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 002173 425 FMN---KMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKE 501 (956)
Q Consensus 425 F~~---kM~hErs~~~eKiq~Erad~l~d~ElqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE 501 (956)
.+- .++.|..++.+.+..=.++- ..+.-+++-||..|.-=+.++|-...+-+.+.+.- -.|...
T Consensus 628 a~r~rk~aE~el~e~~~~~~~l~~~~-~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~------------kka~~~ 694 (859)
T PF01576_consen 628 AERARKQAESELDELQERLNELTSQN-SSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKA------------KKAQAQ 694 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhHhH
Confidence 222 23344455444443222111 12334666666666555555444333322222211 123334
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHHHHHHH
Q 002173 502 LEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQK 546 (956)
Q Consensus 502 ~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~K 546 (956)
+..|..|+..-..-.+.+...|..|+.+.-+|+-=|+++-+...+
T Consensus 695 ~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~ 739 (859)
T PF01576_consen 695 AAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALK 739 (859)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 455566666666667778888889999999998888888765543
No 48
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=91.23 E-value=6.1 Score=41.12 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=38.0
Q ss_pred HHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 002173 217 AWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 275 (956)
Q Consensus 217 ~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le 275 (956)
++..+..++..+|..|.+||..|+.+.+.|..++..|+.+...|..+...|..-+..++
T Consensus 72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777777777777776666666666666666555555555553
No 49
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.16 E-value=25 Score=37.98 Aligned_cols=71 Identities=23% Similarity=0.237 Sum_probs=48.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhh
Q 002173 462 IEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNS 536 (956)
Q Consensus 462 iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kd 536 (956)
+..+-..+|+.+.+-+..|. .++...+..-.....++.++..++.+.-.|-+++.--|-.|+-+.+--|+-
T Consensus 235 l~~~~~~Le~~l~~le~~~~----~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~L 305 (312)
T PF00038_consen 235 LRAKNASLERQLRELEQRLD----EEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKL 305 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHHHHHH----HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455555666655555554 444455555566677888888888888888888888888888877665543
No 50
>PRK12705 hypothetical protein; Provisional
Probab=89.59 E-value=21 Score=42.66 Aligned_cols=61 Identities=26% Similarity=0.396 Sum_probs=34.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhh
Q 002173 200 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKL 267 (956)
Q Consensus 200 lE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksL 267 (956)
+...|..++.++..++.++..+ |..+.+||+.|+.+.+.|..++..|..+.+.|..++..|
T Consensus 61 ~~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 121 (508)
T PRK12705 61 LLRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELEL 121 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666655555 444666666666666666666666555555544444433
No 51
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.35 E-value=79 Score=40.93 Aligned_cols=262 Identities=19% Similarity=0.265 Sum_probs=161.8
Q ss_pred hhHHhhhhHHhhhhhhHHH---HHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHhhhhhhHhhHhhHHH
Q 002173 30 HRSAERKLQEVVAREDDLS---RRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQE 106 (956)
Q Consensus 30 ~s~aeRKL~eVEaRE~~Lr---RerlSf~~Erea~E~~i~kQRe~L~EweKkLqe~eeRL~d~QrlLNqREE~~nE~d~~ 106 (956)
+..+.++||.+-+++..|| ++.--.+.+....+.+-.+-|.--++|+=++++ |.-.+..++|-+.+.+- ..
T Consensus 669 ~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~----l~l~~~r~~~~e~~~~~--~~ 742 (1174)
T KOG0933|consen 669 GADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHE----LALLEKRLEQNEFHKLL--DD 742 (1174)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcChHhhHH--HH
Confidence 3446778888888777664 444444455555555544444444555544443 44455556776666543 45
Q ss_pred hhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHH----hhHHHHHHHHHHHHHhHHhHHHHHHHhhhhhhHHHHHHH
Q 002173 107 LSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLL----KREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 182 (956)
Q Consensus 107 lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~----~rEke~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLl 182 (956)
++....++++.+..|.....+++..++.+.....++. -||..+..+...++...+.+.+..-.+..++ .+.+.|.
T Consensus 743 ~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~-~e~e~l~ 821 (1174)
T KOG0933|consen 743 LKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRE-NEYERLQ 821 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 6788899999999999999999999888866555543 3444444444444444444443333333333 2344444
Q ss_pred HHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHH---HhhhhHHHHhhh
Q 002173 183 ANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALV---DKEKDLVERSHL 259 (956)
Q Consensus 183 deh~a~L~~KK~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lk---EKEkdL~~Ksk~ 259 (956)
.+|+ +|+.-+.+..-.|.+.......-+.++..++.+|..-++.+++....|+ .+..+.++.++.
T Consensus 822 lE~e------------~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~ 889 (1174)
T KOG0933|consen 822 LEHE------------ELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISG 889 (1174)
T ss_pred HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 4443 4666677778888888888888888888888899888888887766665 455666666544
Q ss_pred hHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 002173 260 LEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVN 310 (956)
Q Consensus 260 LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ 310 (956)
+--..+.+..+-...+++...|..+-..+..-++++.+....+..+---|.
T Consensus 890 ~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 890 LLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred hhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 444444444455556666666666666666666666555555555444444
No 52
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.87 E-value=46 Score=37.58 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 002173 237 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNI 290 (956)
Q Consensus 237 qaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~ 290 (956)
..|..++..+.++--+|-.+.+.+.++=+++++....|-.+-.+|-..+.+++.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~ 83 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINA 83 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777777777777777776666666666666543
No 53
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.88 E-value=1e+02 Score=40.47 Aligned_cols=265 Identities=21% Similarity=0.234 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHhhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhh---
Q 002173 148 AVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLD--- 224 (956)
Q Consensus 148 e~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~kRKs~eeEle~K~~~~E~rEve--- 224 (956)
.+......++.-+.+|...-+|+..-...+.++.-+- +..+ .+-..++.+++ ..++.++..|+.+.|.
T Consensus 335 ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~-~~~~----~e~~~~~kn~~----~~~k~~~~~~e~~~vk~~E 405 (1293)
T KOG0996|consen 335 KIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAV-KKEI----KERAKELKNKF----ESLKKKFQDLEREDVKREE 405 (1293)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHH-HHHH----HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3445556666667777777777664333333332222 1111 11122222222 2344555555544443
Q ss_pred -hhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHH-------HhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002173 225 -LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEK-------ENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQ 296 (956)
Q Consensus 225 -l~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEk-------EksLkaeEK~Le~eK~qL~~eKEei~~lK~dlE 296 (956)
++|.=.++.|-+..+++-.++..+.++-.+.=....-+- ++.+.-+++.|...+.-|.. .-..+..++.
T Consensus 406 ~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~---~t~~~~~e~~ 482 (1293)
T KOG0996|consen 406 KLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQ---ETEGIREEIE 482 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhHHHHH
Confidence 334444444444444444444444444333222111111 11222223333222222222 2234567777
Q ss_pred HhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 002173 297 KSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR 376 (956)
Q Consensus 297 K~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~ 376 (956)
++...+..-..++.+++..+.+.++|=.-|+-....+..-.+.+-....-+++..++.+..--....+...+--+..++.
T Consensus 483 ~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~ 562 (1293)
T KOG0996|consen 483 KLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKE 562 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 88888888889999999999999999888888888888888888777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH--hhhhhhhhhHHH
Q 002173 377 KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHK--RDVDSLNREREE 424 (956)
Q Consensus 377 KEa~~I~eErE~lek~~~~EeerLK~EK~~~r~~~k--relEsL~~ekEs 424 (956)
+++.....+=..+...++.=+.++-.-+..|...-. .=+.+|.+.+++
T Consensus 563 k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kes 612 (1293)
T KOG0996|consen 563 KELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKES 612 (1293)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence 777777666666666555444444443443332222 235666666664
No 54
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=87.62 E-value=57 Score=37.15 Aligned_cols=113 Identities=21% Similarity=0.345 Sum_probs=67.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHH
Q 002173 396 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRE 475 (956)
Q Consensus 396 EeerLK~EK~~~r~~~krelEsL~~ekEsF~~kM~hErs~~~eKiq~Erad~l~d~ElqkreLE~~iqkRqEEiE~~L~E 475 (956)
=-+.|+++|..+--.|.++-|.|.-.=-.=.+.+.+|+..+...+.+|..-++.-+.-+=..|+.++...+.++++-.++
T Consensus 85 kl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~E 164 (310)
T PF09755_consen 85 KLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRRE 164 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35567777777766666655555433333445555666666666666666665555555556666666666666655544
Q ss_pred H---HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 002173 476 R---EKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE 515 (956)
Q Consensus 476 R---Ek~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekE 515 (956)
+ |.+.|.+-+ +|...+-+-|.++..|...|+..
T Consensus 165 KVdlEn~LE~EQE-------~lvN~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 165 KVDLENTLEQEQE-------ALVNRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred HHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 333333333 34456677788888888777765
No 55
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=86.91 E-value=1.4e+02 Score=40.96 Aligned_cols=318 Identities=19% Similarity=0.236 Sum_probs=200.1
Q ss_pred HHhHHHHHHHhh--hhhhHHHHHHHHHhHHHHhhhhhhHHHHHHH----------HhhhHHHHHHHHHHHHHhhhhhhhh
Q 002173 160 EQKLLVSQETLA--SKESNEIQKIIANHESALRVKQSEFEAELAI----------KYKLAEDEIEKKRRAWELRDLDLGQ 227 (956)
Q Consensus 160 EkeLl~leEKL~--aRE~~EIQKLldeh~a~L~~KK~EFElElE~----------kRKs~eeEle~K~~~~E~rEvel~h 227 (956)
|.-|..|+.-|. -+|+.++.+++.+.-..|..-+...-.+++. +-+.+.+.|....+.++--+.--..
T Consensus 635 e~~l~qLe~~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~ 714 (1822)
T KOG4674|consen 635 EKRLRQLENELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKN 714 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555443 4677888888888777776665555444432 3344555555555555533333344
Q ss_pred hHHHHHhhhh---hHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh--
Q 002173 228 REESLLEREH---DLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSL-- 302 (956)
Q Consensus 228 ~Eekl~kREq---aLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~-- 302 (956)
...-+.+-++ .+-..+-...+|=.-+++-+..||.--..|+..++.|..+...|.+++.+++.+-..++-+...+
T Consensus 715 l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~ 794 (1822)
T KOG4674|consen 715 LQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEE 794 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555 55555666778888899999999999999999999999999999999999887777766554433
Q ss_pred ---------HHHHHHHHHHHhhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHH
Q 002173 303 ---------DEKKKQVNCAKDKL-EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKR 372 (956)
Q Consensus 303 ---------e~qk~qi~ee~E~L-kiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR 372 (956)
+.+...+..+-..| +-++++.+++-.|+..+...+..|+.+...+..+.+.+..+-..-......|--|-
T Consensus 795 s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~ 874 (1822)
T KOG4674|consen 795 SEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKL 874 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333222222 23678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH------hhhhhhhhhHHHHHHH---HHHHHhhhhhhhhhHHHHH------Hhhhhhhhh--
Q 002173 373 EELRKEAERVAVERVVVSK------SLKDERDSLRQERDAM---RDQHKRDVDSLNREREEFM------NKMVHEHSE-- 435 (956)
Q Consensus 373 ~eL~KEa~~I~eErE~lek------~~~~EeerLK~EK~~~---r~~~krelEsL~~ekEsF~------~kM~hErs~-- 435 (956)
.+|.+.++...-+...+-- ..+.+ +.|+.+.... ..++.--+..+.--.+.|+ ..|..++.+
T Consensus 875 ~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~-~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~ 953 (1822)
T KOG4674|consen 875 SELEKRLKSAKTQLLNLDSKSSNEDATILE-DTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR 953 (1822)
T ss_pred HHHHHHHHHhHHHHhhccccchhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988876665554432 11111 1133333322 2222211111111111111 112222222
Q ss_pred -HHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHH
Q 002173 436 -WFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREK 478 (956)
Q Consensus 436 -~~eKiq~Erad~l~d~ElqkreLE~~iqkRqEEiE~~L~EREk 478 (956)
.++.-+......+.-+|....+|+.+|..-+++.+..-...+.
T Consensus 954 ~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~ 997 (1822)
T KOG4674|consen 954 LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKED 997 (1822)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhh
Confidence 2222334445555666666677777777777666655555444
No 56
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.17 E-value=40 Score=33.92 Aligned_cols=91 Identities=19% Similarity=0.290 Sum_probs=68.9
Q ss_pred HhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHhhhhhhHhhHhhH
Q 002173 25 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKL 104 (956)
Q Consensus 25 Ea~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLqe~eeRL~d~QrlLNqREE~~nE~d 104 (956)
.|.-+..+++-++++++.|-..+..++.||..=...+|.++..-...|.+-..+|.++..+....- ...
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-----------~l~ 79 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-----------QLN 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-----------HHH
Confidence 344455667777888888888888999999998999999999999999999999988888776544 334
Q ss_pred HHhhHhHHHHHHHhhchHHHHH
Q 002173 105 QELSRKEKELEASRANVEEKFK 126 (956)
Q Consensus 105 ~~lk~kEkeLEeakkkie~~~~ 126 (956)
+-+..+|.+|+.+.+++..+..
T Consensus 80 rriq~LEeele~ae~~L~e~~e 101 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETTE 101 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777666655533
No 57
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=86.01 E-value=1e+02 Score=38.53 Aligned_cols=310 Identities=16% Similarity=0.228 Sum_probs=147.8
Q ss_pred hhhhhhhHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHhhhhhhHhhHhhHHHh-------hHhHHHHHHHhhchHHHHH
Q 002173 54 FKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQEL-------SRKEKELEASRANVEEKFK 126 (956)
Q Consensus 54 f~~Erea~E~~i~kQRe~L~EweKkLqe~eeRL~d~QrlLNqREE~~nE~d~~l-------k~kEkeLEeakkkie~~~~ 126 (956)
+..|+-.+|++++.----+.+-+-+++...--|-+.|..+||=++..+.-.-.| ..+..+|+.++..+..+-.
T Consensus 231 y~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~slq~~~~ 310 (786)
T PF05483_consen 231 YKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSLQESES 310 (786)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666554444444444444444444445555555554444444444 4455566665555555444
Q ss_pred HHhhhhhhhhHhHHHHHh--hHH--HHHHHHHHHHHhHHhHHHHHHHhhhhh---hHHHHHHHHHhHHHHhhhhhhHHHH
Q 002173 127 ALNEEKSNLDLTLVSLLK--REE--AVIEREASLQKKEQKLLVSQETLASKE---SNEIQKIIANHESALRVKQSEFEAE 199 (956)
Q Consensus 127 ~Lkeke~dl~~rl~~L~~--rEk--e~~~~~~~Le~KEkeLl~leEKL~aRE---~~EIQKLldeh~a~L~~KK~EFElE 199 (956)
+-+.-+.++......+.. .|+ .+.............+..|+-+++.=. ..++|.+-. ++....-+=+|
T Consensus 311 tq~~le~~lq~~~k~~~qlt~eKe~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqqr~~~-----~ed~lk~l~~e 385 (786)
T PF05483_consen 311 TQKALEEDLQQATKTLIQLTEEKEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQRLKK-----NEDQLKILTME 385 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHH
Confidence 333334344433333221 122 222222233333344445555554432 244444422 22223334456
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhh------hhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHH
Q 002173 200 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLERE------HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE 273 (956)
Q Consensus 200 lE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kRE------qaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~ 273 (956)
|..+-..+++..+.+.. +|+++...-.-|++.. .-+++-.+.|+..+.+|... |.-+++.+.-.+-.
T Consensus 386 Lqkks~eleEmtk~k~~----ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~l---lq~~ekev~dLe~~ 458 (786)
T PF05483_consen 386 LQKKSSELEEMTKQKNN----KEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGL---LQIREKEVHDLEIQ 458 (786)
T ss_pred HHHhhHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHH
Confidence 66666666666655432 2333333333333322 33455555555566655544 33334444444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh-------hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002173 274 ADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA-------MKSEAGELSVLEIKLKEELDVVRAQKLE 346 (956)
Q Consensus 274 Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~Lki-------teeER~E~lrLQseLKeEId~~R~Qke~ 346 (956)
| -...+.=+.+-..++.++..++.+..+=.+-..+... +.-+++....==.++.+-|...+.|.+-
T Consensus 459 l-------~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~ 531 (786)
T PF05483_consen 459 L-------TTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEK 531 (786)
T ss_pred H-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3 3333333333333444444444333222222111111 1112222222223567778888999999
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002173 347 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 382 (956)
Q Consensus 347 LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I 382 (956)
++++++.|......+-.|.+.+-+.-+.-.-|.++-
T Consensus 532 ~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~k 567 (786)
T PF05483_consen 532 MLKQIENLEETNTQLRNELESVKEELKQKGEEVKCK 567 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888777777766555555555553
No 58
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.92 E-value=50 Score=34.85 Aligned_cols=143 Identities=20% Similarity=0.289 Sum_probs=92.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 002173 323 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ 402 (956)
Q Consensus 323 R~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerLK~ 402 (956)
|..-+-|-.-||++|...|......-+...++.++-.+.-.--..+.+.+++|++.+......+..|..... +++
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~----rl~- 96 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKA----RLK- 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-
Confidence 445667778899999999999999999999999999999999999999999999988876666555544322 111
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHH---hhhhhhhhHHHHHHHHHHHhhhhhHhhhhhh-HHHHHHHHHHHHhHHHHHHH
Q 002173 403 ERDAMRDQHKRDVDSLNREREEFMN---KMVHEHSEWFTKIQQERADFLLGIEMQKRDL-ENCIEKRREELESSFREREK 478 (956)
Q Consensus 403 EK~~~r~~~krelEsL~~ekEsF~~---kM~hErs~~~eKiq~Erad~l~d~ElqkreL-E~~iqkRqEEiE~~L~EREk 478 (956)
....++..|..+.+.+.. +++.||.+|..+-.. +++|+. ||..| .+-++++...+...|.-|+.
T Consensus 97 -------~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 97 -------ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235556666666665543 344555555444442 222222 22222 23455566666666666665
Q ss_pred HHHH
Q 002173 479 AFEE 482 (956)
Q Consensus 479 ~FEe 482 (956)
.+.+
T Consensus 165 qL~e 168 (201)
T PF13851_consen 165 QLNE 168 (201)
T ss_pred HHHH
Confidence 5543
No 59
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=85.87 E-value=5.7 Score=48.28 Aligned_cols=112 Identities=22% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHH--------H
Q 002173 12 AEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE--------H 83 (956)
Q Consensus 12 vEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLqe~--------e 83 (956)
.|.++..+...+....+...++...++.+..++..+..++..... ...-.+..|..+.+.|+.. .
T Consensus 91 le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~~~~le~el~~~~e-------~~~~~k~~le~~~~~L~~E~~~~~~e~~ 163 (722)
T PF05557_consen 91 LEKELRELQRQLEREFKRNQELEARLKQLEEREEELEEELEEAEE-------ELEQLKRKLEEEKRRLQREKEQLLEEAR 163 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444 4444444444455555222 1
Q ss_pred HhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhh
Q 002173 84 ERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 130 (956)
Q Consensus 84 eRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lke 130 (956)
+.....+.-+.+=.-.+......++..+.++++.+..++.-...+.+
T Consensus 164 ~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e 210 (722)
T PF05557_consen 164 EEISSLKNELSELERQAENAESQIQSLESELEELKEQLEELQSELQE 210 (722)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222333334455566667777777777777665555533
No 60
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.74 E-value=75 Score=35.84 Aligned_cols=167 Identities=23% Similarity=0.203 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 002173 239 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 318 (956)
Q Consensus 239 Le~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~Lki 318 (956)
|-+...++..|.-=++=|++-++.-...|...-..+......|.++-+-+..+...+....+.+..+..++......+..
T Consensus 121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~ 200 (312)
T smart00787 121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 44555666667777777777776666666655555555555555555555555555555555555555554444433322
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002173 319 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 398 (956)
Q Consensus 319 teeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~Eee 398 (956)
- +..++..+..+|++ .=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus 201 ~--d~~eL~~lk~~l~~----~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~ 274 (312)
T smart00787 201 C--DPTELDRAKEKLKK----LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE 274 (312)
T ss_pred C--CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 24566555555544 34445556667888999999999999999999999999998888888888889999999
Q ss_pred hhHHHHHHHHHHH
Q 002173 399 SLRQERDAMRDQH 411 (956)
Q Consensus 399 rLK~EK~~~r~~~ 411 (956)
+|+..-..++..+
T Consensus 275 ~Lk~~~~~Le~l~ 287 (312)
T smart00787 275 KLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888887654
No 61
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.44 E-value=1.1e+02 Score=37.29 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHHHHHHHH
Q 002173 501 ELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKL 547 (956)
Q Consensus 501 E~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KL 547 (956)
.+.++.-++..++++..++..+...+.++...+++.|+.+...-.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555443333
No 62
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.79 E-value=79 Score=35.33 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 002173 336 ELDVVRAQKLELMVETDKLQLEKAKFEAEWE 366 (956)
Q Consensus 336 EId~~R~Qke~LlkEad~LK~eKekFE~EWE 366 (956)
+|+.++.+...+....+.+..++..+..+=.
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344433333333
No 63
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.72 E-value=1.2e+02 Score=37.27 Aligned_cols=216 Identities=18% Similarity=0.195 Sum_probs=115.9
Q ss_pred hHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhHHhHHHHHHHhhhhhhH
Q 002173 97 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 176 (956)
Q Consensus 97 EE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KEkeLl~leEKL~aRE~~ 176 (956)
+....+..+.+..+++.|+++...|+.-...++.-...+..-...+...+.....++..+..+++=+..|...=..- .
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni--~ 397 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI--A 397 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH--H
Confidence 33345556666666666666666666665555555555554444444444444444444444433322221110000 1
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHH
Q 002173 177 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 256 (956)
Q Consensus 177 EIQKLldeh~a~L~~KK~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~K 256 (956)
.+|.+++. -..|..++..+.+..|.-+.++++.=+... .-++-..-.+...++........-
T Consensus 398 kL~~~v~~----s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~--------------~~~~~e~~~~~~~ik~~r~~~k~~ 459 (594)
T PF05667_consen 398 KLQALVEA----SEQRLVELAQQWEKHRAPLIEEYRRLKEKA--------------SNRESESKQKLQEIKELREEIKEI 459 (594)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------hhcchHHHHHHHHHHHHHHHHHHH
Confidence 22222222 223444555555555555555544322222 222222233344444444444444
Q ss_pred hhhhHHHHhhhHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 002173 257 SHLLEEKENKLIAFEKEADLK---------KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 327 (956)
Q Consensus 257 sk~LKEkEksLkaeEK~Le~e---------K~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~l 327 (956)
...++.|+...+...+.++.- ...++.=...|.+-|.||.|++..+-.=.++|+.-..+|.-|-.-.+|++
T Consensus 460 ~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli 539 (594)
T PF05667_consen 460 EEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI 539 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444444433333221 23445555678888999999999999999999999999999999998888
Q ss_pred HHHHH
Q 002173 328 VLEIK 332 (956)
Q Consensus 328 rLQse 332 (956)
-=.++
T Consensus 540 frdAK 544 (594)
T PF05667_consen 540 FRDAK 544 (594)
T ss_pred HHHhh
Confidence 77666
No 64
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=82.98 E-value=1.1e+02 Score=36.47 Aligned_cols=147 Identities=22% Similarity=0.281 Sum_probs=78.5
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002173 266 KLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL 345 (956)
Q Consensus 266 sLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke 345 (956)
+|.+..+.|+.-+..|.+=+.++..|...++.++..++..+..+..-+++.......- .-|..++..+|..-.
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v-------~~L~~eL~~~r~eLe 354 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEV-------SSLEAELNKTRSELE 354 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHHHHHH
Confidence 3677777788788888888888888888888888888877777777777665555433 334444444444443
Q ss_pred HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHH
Q 002173 346 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEF 425 (956)
Q Consensus 346 ~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerLK~EK~~~r~~~krelEsL~~ekEsF 425 (956)
....+..+.+ ..|..|--.-.++..|++....+. .....|-..++.+-..++..+.-=-..|......+
T Consensus 355 a~~~~e~~~k-------~~~~~l~~~Lqql~~Eae~Ak~ea----~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 355 AAKAEEEKAK-------EAMSELPKALQQLSSEAEEAKKEA----EEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA 423 (522)
T ss_pred HHHhhhcchh-------hhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322221 122223333333333333322111 12233455555555555555554444444444444
Q ss_pred HHhhh
Q 002173 426 MNKMV 430 (956)
Q Consensus 426 ~~kM~ 430 (956)
.+-..
T Consensus 424 eaaKa 428 (522)
T PF05701_consen 424 EAAKA 428 (522)
T ss_pred HHHHH
Confidence 44333
No 65
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=81.85 E-value=1.3e+02 Score=36.61 Aligned_cols=246 Identities=16% Similarity=0.147 Sum_probs=118.5
Q ss_pred HHHHhchHHHHHHHHHHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhh
Q 002173 66 IRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKR 145 (956)
Q Consensus 66 ~kQRe~L~EweKkLqe~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~r 145 (956)
.--|+++.+|...|-+.+.-++-.++-+..=++.....-+...++..+|..+++-++.+...-.+-...+..=+..|.-
T Consensus 137 ~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f- 215 (546)
T KOG0977|consen 137 RGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAF- 215 (546)
T ss_pred hhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-
Confidence 3345666677777766666666666666666666666666666666666666666666543222211111111111111
Q ss_pred HHHHHHHHHHHHHhHHhHHHHHHHhhhhhh-HHHHHHH-HHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhh
Q 002173 146 EEAVIEREASLQKKEQKLLVSQETLASKES-NEIQKII-ANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDL 223 (956)
Q Consensus 146 Eke~~~~~~~Le~KEkeLl~leEKL~aRE~-~EIQKLl-deh~a~L~~KK~EFElElE~kRKs~eeEle~K~~~~E~rEv 223 (956)
....=+.+|.+..-+ .+|+. ...+... ++-..++.-=+-+||.-+..-|+.++.=.+.|+.++...=.
T Consensus 216 ---------~~~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~ 285 (546)
T KOG0977|consen 216 ---------LKRIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAE 285 (546)
T ss_pred ---------HHhccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhc
Confidence 111112222222211 11221 1111111 01111222234456666666666666666666666553100
Q ss_pred hhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 002173 224 DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 303 (956)
Q Consensus 224 el~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e 303 (956)
-- -..-+..-+.|...-.-+.+-..-|-+-|..-.+.++.|+.=+.+|..++......=.+.+...+.+-
T Consensus 286 ~~----------~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mR 355 (546)
T KOG0977|consen 286 RA----------NVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMR 355 (546)
T ss_pred cc----------cchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 00 00011111222222222333333333445555566677766677777777766665555555555555
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 002173 304 EKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA 342 (956)
Q Consensus 304 ~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~ 342 (956)
++..++.-+ ...|+-.+.-|--||..||.
T Consensus 356 eec~~l~~E----------lq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 356 EECQQLSVE----------LQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred HHHHHHHHH----------HHHhhchHhHHHhHHHHHHH
Confidence 555444444 44455555788889999985
No 66
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.72 E-value=2.1e+02 Score=38.00 Aligned_cols=154 Identities=19% Similarity=0.279 Sum_probs=94.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002173 314 DKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL 393 (956)
Q Consensus 314 E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~ 393 (956)
++....+.++.++-+--.+.++....+-.....|+++.+..+-.+..|++.-|-.+..-+..+.|...+.+..+..++-+
T Consensus 384 n~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l 463 (1293)
T KOG0996|consen 384 NKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEEREL 463 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777777888888888888888888888888888888888888888888888888877777766666666
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHh---hhhhHhhhhhhHHHHHHHHHHHH
Q 002173 394 KDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADF---LLGIEMQKRDLENCIEKRREELE 470 (956)
Q Consensus 394 ~~EeerLK~EK~~~r~~~krelEsL~~ekEsF~~kM~hErs~~~eKiq~Erad~---l~d~ElqkreLE~~iqkRqEEiE 470 (956)
....+.|+++=.+.+..+ +.....| .-|..++..-|+.+ --+|++-. ...+...++.++..
T Consensus 464 ~e~~~~l~~~t~~~~~e~-----------~~~ekel----~~~~~~~n~~~~e~~vaesel~~L~-~~~~~~~~~~e~lk 527 (1293)
T KOG0996|consen 464 DEILDSLKQETEGIREEI-----------EKLEKEL----MPLLKQVNEARSELDVAESELDILL-SRHETGLKKVEELK 527 (1293)
T ss_pred HHHHHHHhhhhhhhHHHH-----------HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 555555555555544444 3333333 23443333333322 22222222 23345556666666
Q ss_pred hHHHHHHHHHHHH
Q 002173 471 SSFREREKAFEEE 483 (956)
Q Consensus 471 ~~L~EREk~FEee 483 (956)
..|..-.....+.
T Consensus 528 ~~L~~~~~~~~e~ 540 (1293)
T KOG0996|consen 528 GKLLASSESLKEK 540 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 6665544444433
No 67
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=80.63 E-value=2e+02 Score=37.69 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhH
Q 002173 336 ELDVVRAQKLELMVETDKLQLEKAKFEAEWEMID 369 (956)
Q Consensus 336 EId~~R~Qke~LlkEad~LK~eKekFE~EWE~LD 369 (956)
+-|..|+|-++|+.|---|.-+.+..-.-|++|-
T Consensus 316 erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq 349 (1195)
T KOG4643|consen 316 ERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQ 349 (1195)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence 4456667777777777777777777777777654
No 68
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=78.71 E-value=54 Score=31.09 Aligned_cols=88 Identities=26% Similarity=0.303 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 002173 207 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 286 (956)
Q Consensus 207 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKE 286 (956)
++..|..|+.+...++..+..++..|.++++.|....-.+..-=++-+. ...-..+..+.+......=-.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~----------k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEA----------KRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888888888888888888888888777666544333333 333333444444444444445
Q ss_pred HHHHHHHHHHHhhhhhHH
Q 002173 287 EVNIIKSDLQKSLSSLDE 304 (956)
Q Consensus 287 ei~~lK~dlEK~ra~~e~ 304 (956)
+|..+..+|..+.+.+..
T Consensus 82 ei~~l~~~l~~l~~~~~k 99 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISK 99 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555566665555554433
No 69
>PRK04863 mukB cell division protein MukB; Provisional
Probab=78.51 E-value=2.6e+02 Score=37.93 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHHHH
Q 002173 500 KELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQ 543 (956)
Q Consensus 500 kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~l 543 (956)
...++-..++--+..+..++...+-.+..++-++...|..|..+
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ 601 (1486)
T PRK04863 558 QLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444555555555555555555555555555555443
No 70
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=78.16 E-value=2.1e+02 Score=36.69 Aligned_cols=317 Identities=18% Similarity=0.162 Sum_probs=154.4
Q ss_pred hhhhhhhHHHHhhcchhHHhhhhHHhhhh-hhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHhh
Q 002173 15 KLHAAESLQAEANRYHRSAERKLQEVVAR-EDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLL 93 (956)
Q Consensus 15 KL~AAeAklAEa~Rk~s~aeRKL~eVEaR-E~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLqe~eeRL~d~QrlL 93 (956)
|+.+-++++-++.=+-|.+.-...-|-.- +..+||.-+-+.-....|+.+|..---++.+.+-.+|-.|.-+.-.|.-+
T Consensus 57 rdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ 136 (1265)
T KOG0976|consen 57 RDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDK 136 (1265)
T ss_pred HHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666665555554443333322 23455555555555555555554444444444444555555555455444
Q ss_pred hhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhHHhHHHHHHHhh--
Q 002173 94 NEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA-- 171 (956)
Q Consensus 94 NqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KEkeLl~leEKL~-- 171 (956)
.+-+-.+.+....+-..+.+|-+-.--|-....+|+++-..|+..-..+..+=.++......|+-+ +--|-+-+.
T Consensus 137 ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k---~~k~~e~~~~n 213 (1265)
T KOG0976|consen 137 KENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEK---LEKFKEDLIEK 213 (1265)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcc
Confidence 444444444444444444444444444444444444444444333333333333333222222221 111111111
Q ss_pred -------hhhhHHHHHHHHH------hHHHHhhhhhhHH--HHHHHHhhhHHHHHHHHHHHHHhh----hhhhhhhHHHH
Q 002173 172 -------SKESNEIQKIIAN------HESALRVKQSEFE--AELAIKYKLAEDEIEKKRRAWELR----DLDLGQREESL 232 (956)
Q Consensus 172 -------aRE~~EIQKLlde------h~a~L~~KK~EFE--lElE~kRKs~eeEle~K~~~~E~r----Evel~h~Eekl 232 (956)
+.+.+-.|+++.+ |.-.|...+..+= -|..+---..-++|+.|.+.|+.+ ..++++.|+.|
T Consensus 214 D~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelV 293 (1265)
T KOG0976|consen 214 DQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELV 293 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 1223334444433 3333333322221 122222233455677777777654 34556666655
Q ss_pred HhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHhhhhhHHH
Q 002173 233 LEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEK-------EEVNIIKSDLQKSLSSLDEK 305 (956)
Q Consensus 233 ~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eK-------Eei~~lK~dlEK~ra~~e~q 305 (956)
..-.-.|+-.. +.-+.-.....+--+.|.++-+++-.++.-|+-+- +.+-....||||-++.....
T Consensus 294 k~~qeeLd~lk-------qt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~d 366 (1265)
T KOG0976|consen 294 KELQEELDTLK-------QTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMD 366 (1265)
T ss_pred HHHHHHHHHHH-------HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 44333333211 11111122223334455555555655555444332 34556778999999998888
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002173 306 KKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQK 344 (956)
Q Consensus 306 k~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qk 344 (956)
-+.|.+-. +.-+++-.-++-||+++-++||.+...-
T Consensus 367 vr~i~e~k---~nve~elqsL~~l~aerqeQidelKn~i 402 (1265)
T KOG0976|consen 367 VRSIQEKK---ENVEEELQSLLELQAERQEQIDELKNHI 402 (1265)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77776544 4455667788899999999999876543
No 71
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=77.69 E-value=1.4e+02 Score=34.24 Aligned_cols=98 Identities=18% Similarity=0.395 Sum_probs=74.8
Q ss_pred HHhHHhhHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----hhhHHHHHHHHH---HHHh
Q 002173 345 LELMVETDKLQLEKAKF----EAEWEMIDEKREELRKEAERVAVERVVVSKSLKDER----DSLRQERDAMRD---QHKR 413 (956)
Q Consensus 345 e~LlkEad~LK~eKekF----E~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~Ee----erLK~EK~~~r~---~~kr 413 (956)
+-|++=.+.|+.+|+.+ |.|=|.|. ..|++-+..|-.++-.++..+..|. ++|......++. .++.
T Consensus 80 N~LlKkl~~l~keKe~L~~~~e~EEE~lt---n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~ 156 (310)
T PF09755_consen 80 NTLLKKLQQLKKEKETLALKYEQEEEFLT---NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQE 156 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44677777788888766 55556665 4678888888888888888777665 566667777764 6778
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHH
Q 002173 414 DVDSLNREREEFMNKMVHEHSEWFTKIQQERA 445 (956)
Q Consensus 414 elEsL~~ekEsF~~kM~hErs~~~eKiq~Era 445 (956)
.++-|+.++=...+.+++|+-.++.+++.-=.
T Consensus 157 ~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~ 188 (310)
T PF09755_consen 157 ELERLRREKVDLENTLEQEQEALVNRLWKQMD 188 (310)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999888776433
No 72
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=77.06 E-value=1.3e+02 Score=36.28 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=44.1
Q ss_pred HhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 002173 248 DKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 317 (956)
Q Consensus 248 EKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~Lk 317 (956)
+++++++.+-.-...+|..-....+..+..+.++......+...+..+++-...++.+...+.++++..+
T Consensus 189 ~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak 258 (489)
T PF05262_consen 189 DKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAK 258 (489)
T ss_pred ccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455666655666666666666666666666667666667776666666666666666666655555543
No 73
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=77.05 E-value=0.77 Score=55.47 Aligned_cols=70 Identities=26% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Q 002173 501 ELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 570 (956)
Q Consensus 501 E~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vEklK~ 570 (956)
++-.+..+...++.....+...+..+..+...++..+..+..+...|+.|+-++.+||+.+-+++..+-.
T Consensus 358 k~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 358 KLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455777788888888888888888999999999999999999999999999999999999988887754
No 74
>PRK12705 hypothetical protein; Provisional
Probab=74.99 E-value=1.7e+02 Score=35.41 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHH
Q 002173 193 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 256 (956)
Q Consensus 193 K~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~K 256 (956)
+.++|-|+...|..+... ..-+.+||-.+..+.+.|.+++..|+.+...|..++..+..+
T Consensus 65 ~~~~e~e~~~~~~~~~~~----e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 65 RNQQRQEARREREELQRE----EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544332 222444444455555555555555544444444444444444
No 75
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=74.67 E-value=69 Score=34.79 Aligned_cols=126 Identities=21% Similarity=0.227 Sum_probs=65.5
Q ss_pred hHHHhHHHHHHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHH
Q 002173 3 ENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE 82 (956)
Q Consensus 3 e~a~kk~~EvEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLqe~ 82 (956)
+.|.++..+.+.+|...+.....+...-.....+...++..-..++.++..+...+...+..+..-+..-..-.+--...
T Consensus 1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~L 80 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQL 80 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777666666666666666666555555555555555444444433333322222222222223
Q ss_pred HHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHH
Q 002173 83 HERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 128 (956)
Q Consensus 83 eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~L 128 (956)
...+.+.+..+.+-.+-....+.....++.+|..++.....+...|
T Consensus 81 e~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 81 EQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555556666666666666666555554443
No 76
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=74.45 E-value=1.1e+02 Score=33.24 Aligned_cols=106 Identities=19% Similarity=0.286 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 002173 287 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 366 (956)
Q Consensus 287 ei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE 366 (956)
.|..+..+..+....+......|..--+++++.++++..|-....++.+++..++.+..-..+|-..|.+
T Consensus 13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~---------- 82 (246)
T PF00769_consen 13 RLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ---------- 82 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 4567778888888889999999999999999999999988888888888877777666655555554444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 002173 367 MIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 410 (956)
Q Consensus 367 ~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerLK~EK~~~r~~ 410 (956)
+..+++-++..+.+++..-+ .|-.+|+.+-..++..
T Consensus 83 ----e~~e~~~~i~~l~ee~~~ke----~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 83 ----ELREAEAEIARLEEESERKE----EEAEELQEELEEARED 118 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 44444445555544443322 2444555544444443
No 77
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=73.80 E-value=1.8e+02 Score=33.71 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=14.7
Q ss_pred HhHHHHHHHhhhhhhhHHHHhhcch
Q 002173 6 QKKFAEAEAKLHAAESLQAEANRYH 30 (956)
Q Consensus 6 ~kk~~EvEaKL~AAeAklAEa~Rk~ 30 (956)
...+.+++.+|..|+..+..--+++
T Consensus 167 ~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 167 DEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455566666666666666554443
No 78
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=73.22 E-value=1.2e+02 Score=32.79 Aligned_cols=148 Identities=21% Similarity=0.314 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 002173 287 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 366 (956)
Q Consensus 287 ei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE 366 (956)
+|-.|+..+--.++.+.....++......+..- . -|++.|-.+-.-...|++-|+..-..++.|+-
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K---~-----------~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~ 97 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTK---Q-----------LELEVCENELQRKKNEAELLREKLGQLEAELA 97 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---h-----------HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHH
Confidence 455555555555555555555555444433221 1 24444544444455555556555555555554
Q ss_pred hhHHHHHHH---HHHHH------HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHH
Q 002173 367 MIDEKREEL---RKEAE------RVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWF 437 (956)
Q Consensus 367 ~LDEKR~eL---~KEa~------~I~eErE~lek~~~~EeerLK~EK~~~r~~~krelEsL~~ekEsF~~kM~hErs~~~ 437 (956)
.|..--+.+ ....- ....++.+ -......|+.+-+.+ +.+|-..+..++.|+...++||..|.
T Consensus 98 ~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~----~~~~~~~l~~e~erL----~aeL~~er~~~e~q~~~Fe~ER~~W~ 169 (202)
T PF06818_consen 98 ELREELACAGRLKRQCQLLSESDEAKAQRQA----GEDELGSLRREVERL----RAELQRERQRREEQRSSFEQERRTWQ 169 (202)
T ss_pred HHHHHHHhhccchhhhccccccchhHHhhcc----ccccchhHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 443333332 00000 00001100 011223333333333 34555667788899999999999997
Q ss_pred H---HHHHHHHHhhh-hhHhhhh
Q 002173 438 T---KIQQERADFLL-GIEMQKR 456 (956)
Q Consensus 438 e---Kiq~Erad~l~-d~Elqkr 456 (956)
+ |+-.=..++.. =++|-+|
T Consensus 170 eEKekVi~YQkQLQ~nYvqMy~r 192 (202)
T PF06818_consen 170 EEKEKVIRYQKQLQQNYVQMYQR 192 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 33333334433 3445443
No 79
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=70.57 E-value=3.5e+02 Score=35.63 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHh
Q 002173 460 NCIEKRREELESSFREREKAFEEEKMREFQQISSLK----EKAEKELEQVTLEIKRL 512 (956)
Q Consensus 460 ~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lk----E~a~kE~Eev~lE~~rL 512 (956)
+.|--+-|+++..|..+.+-.+.-+.+=..-|..|- +.+.+=+++|..-.-.|
T Consensus 986 m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~I 1042 (1174)
T KOG0933|consen 986 MDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSI 1042 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 345567777778888888877777777777776664 45566677887776653
No 80
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=70.00 E-value=3.6e+02 Score=35.55 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=34.4
Q ss_pred hHHHHHHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhch
Q 002173 7 KKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSL 72 (956)
Q Consensus 7 kk~~EvEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L 72 (956)
.+++.+....+.-.+..++++.-+..+.-.....+.+...+......+..+.......+.-++..|
T Consensus 246 ~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~ 311 (1201)
T PF12128_consen 246 PEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDEL 311 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555555555555555555555555555444433
No 81
>PRK09039 hypothetical protein; Validated
Probab=69.83 E-value=2e+02 Score=32.69 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=33.4
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 002173 308 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK 358 (956)
Q Consensus 308 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eK 358 (956)
++..-...|..++..-.+-..-=.-|+++|+.+|.|.-.|..+.+.++++-
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344666666666666666667778888888888666666666665554
No 82
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=68.35 E-value=3.8e+02 Score=35.27 Aligned_cols=131 Identities=21% Similarity=0.156 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 002173 239 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLL-------QKEKEEVNIIKSDLQKSLSSLDEKKKQVNC 311 (956)
Q Consensus 239 Le~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL-------~~eKEei~~lK~dlEK~ra~~e~qk~qi~e 311 (956)
|.++.+-|.+.=+++.-..-.|...+|.|.-+.+++..+.... ..+.+.+..+-.......+..++-.-+|..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444433332221 223444555555555555555555556666
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhH
Q 002173 312 AKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMID 369 (956)
Q Consensus 312 e~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LD 369 (956)
....|.-..-|.+-+.-+-.+||+.+-+|=-|-..+..=++.|.+.+-..|.|-..|=
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~Ll 550 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLL 550 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666665666666666666789999999999999999999999999988888877664
No 83
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=67.13 E-value=1.5e+02 Score=30.23 Aligned_cols=90 Identities=21% Similarity=0.319 Sum_probs=65.9
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002173 311 CAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 390 (956)
Q Consensus 311 ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~le 390 (956)
+-.+.|+.++.+.+=+---=--|--+++.....++.+..+++.-+++-..++.+-+.+...+..|.-|+..+..+|+.|.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555554443322222335567778888888899999999999999999999999999999999999999888888
Q ss_pred Hhhhhhhhhh
Q 002173 391 KSLKDERDSL 400 (956)
Q Consensus 391 k~~~~EeerL 400 (956)
+.+.....++
T Consensus 87 k~lq~~q~kv 96 (140)
T PF10473_consen 87 KELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHH
Confidence 7776544443
No 84
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=65.33 E-value=91 Score=35.04 Aligned_cols=68 Identities=28% Similarity=0.373 Sum_probs=18.9
Q ss_pred hhhhhhhhhhhHHHHHHHHH------HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002173 315 KLEAMKSEAGELSVLEIKLK------EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 382 (956)
Q Consensus 315 ~LkiteeER~E~lrLQseLK------eEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I 382 (956)
.+..+..|+..|...-.+|. .+++.+......|.+|...|.++-...|.|=+.|+.-...++.+...+
T Consensus 17 ~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 17 QLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp -------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444443 333333333334444444444444444444444444444444444433
No 85
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.27 E-value=95 Score=34.88 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 002173 322 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 355 (956)
Q Consensus 322 ER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK 355 (956)
+.+.+..-...+.++.+.+-.|........|.|+
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445666777777777777777666665
No 86
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=64.07 E-value=5.7e+02 Score=35.70 Aligned_cols=473 Identities=19% Similarity=0.224 Sum_probs=223.9
Q ss_pred HhHHHHHHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhh-------hhhhhHHHHHHHHHhchHHHHHH
Q 002173 6 QKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFK-------ADCEEKEREIIRERQSLSDRKKI 78 (956)
Q Consensus 6 ~kk~~EvEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~-------~Erea~E~~i~kQRe~L~EweKk 78 (956)
.+++..+..=++.++...+.++---+.+..++.-++++=+.|+.+-..|. .|.+++....+.++.+|...+-.
T Consensus 709 ~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~ 788 (1822)
T KOG4674|consen 709 EERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQ 788 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777888888888888888999999999999999988877665 34555555555555555555554
Q ss_pred HHHHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHh----hHH-------
Q 002173 79 LQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLK----REE------- 147 (956)
Q Consensus 79 Lqe~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~----rEk------- 147 (956)
....++-...++..+++ .+..++.+|..++++++....-++.-..+++.-|...-. -..
T Consensus 789 ~~~~e~s~~~~k~~~e~----------~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~ 858 (1822)
T KOG4674|consen 789 KNELEESEMATKDKCES----------RIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLT 858 (1822)
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444442 233445555555555555544444444333333322211 111
Q ss_pred HHHHHHHHHHHhHHhHHHHHHHhhhhhhHHHHHHHHHh---HHHHhhhhhhHHHHHHHH---hhhHHHHHHH---HHHHH
Q 002173 148 AVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANH---ESALRVKQSEFEAELAIK---YKLAEDEIEK---KRRAW 218 (956)
Q Consensus 148 e~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh---~a~L~~KK~EFElElE~k---RKs~eeEle~---K~~~~ 218 (956)
+++..+..+.+.|.++..|..+|. .+.++.+..+. .....-+-..|..++++- +..+-..+.. =-...
T Consensus 859 ~l~~~~~~~~~le~k~~eL~k~l~---~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~ 935 (1822)
T KOG4674|consen 859 SLDSVSTNIAKLEIKLSELEKRLK---SAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEY 935 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344444444555555555543 35666666655 222333333466555544 2222222211 11122
Q ss_pred HhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhH--------HHHH---HhHHHHHHHHHHHHH
Q 002173 219 ELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI--------AFEK---EADLKKSLLQKEKEE 287 (956)
Q Consensus 219 E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLk--------aeEK---~Le~eK~qL~~eKEe 287 (956)
-.-|.-|..+...+.+--+.++.+.+.+..+--.|..++..|+..=..|. -.++ .+..+..-++.+...
T Consensus 936 ~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~ 1015 (1822)
T KOG4674|consen 936 SSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKS 1015 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHH
Confidence 22233333333333333333333333333333333333333322211111 1112 112223334444444
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh----hhHHH---HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Q 002173 288 VNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA----GELSV---LEIKLKEELDVVRAQKLELMVETDKLQLEKAK 360 (956)
Q Consensus 288 i~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER----~E~lr---LQseLKeEId~~R~Qke~LlkEad~LK~eKek 360 (956)
+.....+..+....+...+..+ .+.+......- ..|.. .=.+|+++..+|-.+-..|-+.++-+...-..
T Consensus 1016 ~~~~~s~~~~~~~~~k~dl~~~---~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e 1092 (1822)
T KOG4674|consen 1016 LLKAASQANEQIEDLQNDLKTE---TEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSE 1092 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhh
Confidence 4444444433333333333222 22222222211 12222 22456778888888888888888888888888
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhhhhHHHH-----HHH---HHHHHhhhhhhhhhHHHHHHhh
Q 002173 361 FEAEWEMIDEKREELRKEAERVAVERVVVSKS---LKDERDSLRQER-----DAM---RDQHKRDVDSLNREREEFMNKM 429 (956)
Q Consensus 361 FE~EWE~LDEKR~eL~KEa~~I~eErE~lek~---~~~EeerLK~EK-----~~~---r~~~krelEsL~~ekEsF~~kM 429 (956)
|++-|. |++.-|..|.......=+-|+.. +|+=-+.+=.-- .+| ..+..+=+-.|+++++-|.++.
T Consensus 1093 ~~~~w~---E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Ekei~~tk~ 1169 (1822)
T KOG4674|consen 1093 QERDWS---EKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKEIAETKL 1169 (1822)
T ss_pred cccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHHHHhhhH
Confidence 999995 55555555554443333333322 221111111110 000 2234555566778888776653
Q ss_pred ---hhhhhhHHHHHH---HHHHHhhhhhHhhhhhhHH---------HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhH
Q 002173 430 ---VHEHSEWFTKIQ---QERADFLLGIEMQKRDLEN---------CIEKRREELESSFREREKAFEEEKMREFQQISSL 494 (956)
Q Consensus 430 ---~hErs~~~eKiq---~Erad~l~d~ElqkreLE~---------~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~l 494 (956)
..|-..+..++. +...|+.+.+---+-.-.. .+.+.-+.+ +-|+|=-+.|.++.++.++.|--|
T Consensus 1170 ~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~v-Nll~EsN~~LRee~~~~~~k~qEl 1248 (1822)
T KOG4674|consen 1170 DTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEV-NLLRESNKVLREENEANLEKIQEL 1248 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344333333322 2334444333332222211 111111111 234455566666666666666555
Q ss_pred HHHH
Q 002173 495 KEKA 498 (956)
Q Consensus 495 kE~a 498 (956)
.+.+
T Consensus 1249 ~~~i 1252 (1822)
T KOG4674|consen 1249 RDKI 1252 (1822)
T ss_pred HHHH
Confidence 5443
No 87
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=63.54 E-value=3.3e+02 Score=32.73 Aligned_cols=367 Identities=21% Similarity=0.288 Sum_probs=176.1
Q ss_pred HHHHHHHhHHhHHHHHHHhhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHH
Q 002173 152 REASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREES 231 (956)
Q Consensus 152 ~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eek 231 (956)
.+..|..-..+|..+.+.|...|..-.+=| .||+.-++.+ ++|..|.....-.. .
T Consensus 32 ~e~eL~~~qeel~~~k~~l~~~E~~k~~~l----------------~ELe~akr~v-eel~~kLe~~~~~~--------~ 86 (522)
T PF05701_consen 32 KETELEKAQEELAKLKEQLEAAEREKAQAL----------------SELESAKRTV-EELKLKLEKAQAEE--------K 86 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHH-HHHHHHHHHHHHHH--------H
Confidence 445556666666777777766666444422 2333333322 33444433222110 0
Q ss_pred HHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 002173 232 LLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNC 311 (956)
Q Consensus 232 l~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~e 311 (956)
.-.++.+.---++.+.+.......... |-..|.....+...--.-|..=+++|.+++.++......-..=..++..
T Consensus 87 --~a~~~~e~~k~r~~e~e~~~~~~~~~~--~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aee 162 (522)
T PF05701_consen 87 --QAEEDSELAKFRAKELEQGIAEEASVA--WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEE 162 (522)
T ss_pred --HHHHhhHHhHHHHHHHhhhhcccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222224455555555443332 4455555555555556667777777777777777776665556666666
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002173 312 AKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKL----QLEKAKFEAEWEMIDEKREELRKEAERVAVERV 387 (956)
Q Consensus 312 e~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~L----K~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE 387 (956)
+.-..+....--.++..==..||+.|+..+.-...-..+.-.+ .+.+..|+.+-+.-.++-..|.+++..+..=..
T Consensus 163 a~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~ 242 (522)
T PF05701_consen 163 AVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLES 242 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555544333333333558888888765433332222222 244455555555555555555555533333333
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhH------HH
Q 002173 388 VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLE------NC 461 (956)
Q Consensus 388 ~lek~~~~EeerLK~EK~~~r~~~krelEsL~~ekEsF~~kM~hErs~~~eKiq~Erad~l~d~ElqkreLE------~~ 461 (956)
+|.... .+-..|+.+...... ..++.-. +.-.-...++..-..+..+++--+.+|+ +.
T Consensus 243 kL~~a~-~~l~~Lq~El~~~~~---~~l~~~~------------~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~ 306 (522)
T PF05701_consen 243 KLAEAS-AELESLQAELEAAKE---SKLEEEA------------EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASS 306 (522)
T ss_pred HHHHHH-HHHHHHHHHHHHHHH---HHHhhhH------------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 233444433222222 2222111 0111111122222222222222222221 11
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHH
Q 002173 462 IEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELM 541 (956)
Q Consensus 462 iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~ 541 (956)
|..-.+-+...| ++.+. ++..+..--..+...+..+..++.++..+-.-+...-.+....+.+|...+..|.
T Consensus 307 L~~~vesL~~EL-e~~K~-------el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~ 378 (522)
T PF05701_consen 307 LRASVESLRSEL-EKEKE-------ELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLS 378 (522)
T ss_pred HHHHHHHHHHHH-HHHHH-------HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHH
Confidence 222222222222 11111 1111111112333344444445555544444444455556667888888888888
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhhh
Q 002173 542 VQRQKLEEQRQLLHADREEIQAESERLKKL 571 (956)
Q Consensus 542 ~ls~KLk~QRE~~~~ERe~f~~~vEklK~c 571 (956)
.-....+.-.+....+-...-..+++.|..
T Consensus 379 ~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~ 408 (522)
T PF05701_consen 379 SEAEEAKKEAEEAKEEVEKAKEEAEQTKAA 408 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888887754
No 88
>PRK09039 hypothetical protein; Validated
Probab=63.41 E-value=2.7e+02 Score=31.75 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=21.7
Q ss_pred HHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002173 262 EKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSS 301 (956)
Q Consensus 262 EkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~ 301 (956)
+-+..+.....+|...+...-...-.+..|+.+|+-+++.
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q 152 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ 152 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555666666666555544
No 89
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=63.38 E-value=3.2e+02 Score=33.65 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=28.8
Q ss_pred HhHHHHHHHhhhhhhhHHHHhhcchhHHh--------hhhHHhhhhhhHHHHHHhHhhhhhhhHH
Q 002173 6 QKKFAEAEAKLHAAESLQAEANRYHRSAE--------RKLQEVVAREDDLSRRIASFKADCEEKE 62 (956)
Q Consensus 6 ~kk~~EvEaKL~AAeAklAEa~Rk~s~ae--------RKL~eVEaRE~~LrRerlSf~~Erea~E 62 (956)
...+.++..+|.+|++.++.--+++..+. .+|.++..+=...+-++....+-.....
T Consensus 200 ~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 200 APEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777666655544322 3444444444444444444444333333
No 90
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=63.10 E-value=1.8e+02 Score=31.76 Aligned_cols=96 Identities=19% Similarity=0.288 Sum_probs=63.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHH---HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 002173 316 LEAMKSEAGELSVLEIKLKEELDVVRAQKL---ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK- 391 (956)
Q Consensus 316 LkiteeER~E~lrLQseLKeEId~~R~Qke---~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek- 391 (956)
++-...=+.+|-.+-..|.++++.++.... ++.+|.+.|-+||..+..|--.|..=.-.|+...+....+|.+...
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777777778887777766543 4457777777788777777777777777777666666666554432
Q ss_pred --hhhhhhhhhHHHHHHHHHHH
Q 002173 392 --SLKDERDSLRQERDAMRDQH 411 (956)
Q Consensus 392 --~~~~EeerLK~EK~~~r~~~ 411 (956)
.++.|...||.+-+.||..|
T Consensus 83 i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 83 IQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 23456667777777666653
No 91
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=62.86 E-value=2.1e+02 Score=31.26 Aligned_cols=76 Identities=26% Similarity=0.318 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 002173 471 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 550 (956)
Q Consensus 471 ~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~Q 550 (956)
..|+.+-..|+.-+..-++.+.++.... +=+++..-|+..|..||+ ..-+++-.|+.||..|.+.=+.++..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~-------~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERM-------AHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888889998888888888877655 555555555555555554 55677888999999999988888877
Q ss_pred HHHH
Q 002173 551 RQLL 554 (956)
Q Consensus 551 RE~~ 554 (956)
|...
T Consensus 76 r~~~ 79 (230)
T PF10146_consen 76 RNKR 79 (230)
T ss_pred HHHH
Confidence 7664
No 92
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=62.50 E-value=5.2e+02 Score=34.73 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=66.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 002173 268 IAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLEL 347 (956)
Q Consensus 268 kaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~L 347 (956)
.+..+.|+.....+..+-+....+..-..-.--.+...+.......+.+...++.-..+..+..+|..+.+.+|.+.-.+
T Consensus 542 ~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~ 621 (1317)
T KOG0612|consen 542 NSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEI 621 (1317)
T ss_pred HHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333333333333333344444445556667788888888888888888888889988888888
Q ss_pred HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002173 348 MVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVER 386 (956)
Q Consensus 348 lkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eEr 386 (956)
..+.-+|+.+-. .|.+.-..+.++...+-+.|
T Consensus 622 ~e~~~~l~~~i~-------sL~~~~~~~~~~l~k~~el~ 653 (1317)
T KOG0612|consen 622 SEIIAELKEEIS-------SLEETLKAGKKELLKVEELK 653 (1317)
T ss_pred HHHHHHHHhHHH-------HHHHHHHhhhhHHHHHHHHH
Confidence 777777765544 44455555555555554443
No 93
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=62.00 E-value=1.7e+02 Score=28.96 Aligned_cols=76 Identities=25% Similarity=0.300 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 002173 239 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 317 (956)
Q Consensus 239 Le~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~Lk 317 (956)
|.....+|+++-.++..++..+..++..+...-+ .....+...++++..++.-++-.++....+.++...+.++|+
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~---~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLK---SLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555554444 447888889999999999999999999999999988888876
No 94
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.77 E-value=3.7e+02 Score=32.80 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002173 354 LQLEKAKFEAEWEMIDEKREELRKEAERV 382 (956)
Q Consensus 354 LK~eKekFE~EWE~LDEKR~eL~KEa~~I 382 (956)
+..+|...+.+...+...+.+..+.+..+
T Consensus 260 ~~~~r~~Le~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 260 LFEEREQLERQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555554433
No 95
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=61.46 E-value=2.2e+02 Score=30.11 Aligned_cols=96 Identities=22% Similarity=0.301 Sum_probs=59.5
Q ss_pred HHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhHHhHHHHH
Q 002173 88 DAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQ 167 (956)
Q Consensus 88 d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KEkeLl~le 167 (956)
..+.-+.+...++......+....+.++..+..++.-+..|......+...-.......+.+......+......|..++
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 139 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQ 139 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555666666666666666666666666666666663333334444555666677777777777777
Q ss_pred HHhhhhhhHHHHHHHH
Q 002173 168 ETLASKESNEIQKIIA 183 (956)
Q Consensus 168 EKL~aRE~~EIQKLld 183 (956)
..+..+-+.-++.|..
T Consensus 140 ~~l~~~r~~l~~~l~~ 155 (302)
T PF10186_consen 140 SQLARRRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777766665543
No 96
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=61.42 E-value=2.4e+02 Score=34.06 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 002173 335 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 414 (956)
Q Consensus 335 eEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerLK~EK~~~r~~~kre 414 (956)
.+++..|+.-+++..|++.|+++--.-+++=-.+.-|-.+++--+++...|...+. .+...|....+.-+.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence 58899999999999999999998888888888888787888777777777765544 45556666777777777766
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHH
Q 002173 415 VDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRR 466 (956)
Q Consensus 415 lEsL~~ekEsF~~kM~hErs~~~eKiq~Erad~l~d~ElqkreLE~~iqkRq 466 (956)
-+.++.+.-+.-.+ +.|++-|=|+|=.-|...+
T Consensus 423 ~e~~~~~~~s~d~~-------------------I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 423 EEREKEALGSKDEK-------------------ITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHhHheehhhhh
Confidence 66665554443333 3666666666655444433
No 97
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=61.22 E-value=4.3e+02 Score=33.29 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=31.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHH-HHhhhhHHHHhhhhH
Q 002173 200 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRAL-VDKEKDLVERSHLLE 261 (956)
Q Consensus 200 lE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~l-kEKEkdL~~Ksk~LK 261 (956)
+-++|+-+|.|+..-++++-.+|-.+..+|..+ ..++.. ++-++|.+.=+.+|-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~--------~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL--------QELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhHHHHHHHHH
Confidence 455566666666666666666666666666655 223333 445556665555554
No 98
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.03 E-value=4.7e+02 Score=33.76 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=11.5
Q ss_pred hchHHHHHHHhhhhhhhhHhHHH
Q 002173 119 ANVEEKFKALNEEKSNLDLTLVS 141 (956)
Q Consensus 119 kkie~~~~~Lkeke~dl~~rl~~ 141 (956)
+.+.-+..+|+.+.-.|+.||-+
T Consensus 440 ~ql~~eletLn~k~qqls~kl~D 462 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQQLSGKLQD 462 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Confidence 33444445555555555555544
No 99
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=59.10 E-value=5.2e+02 Score=33.64 Aligned_cols=193 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred ChhHHHhHHHHHHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHH
Q 002173 1 MVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQ 80 (956)
Q Consensus 1 ~~e~a~kk~~EvEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLq 80 (956)
|+..|+..+.-.+.-|.+-+.-++++-|-.-++--.-+ .||-+..-.-+.|.-.++...+ +.+-+++-.
T Consensus 352 ~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e-------qLr~elaql~a~r~q~eka~~~----~ee~e~~~l 420 (980)
T KOG0980|consen 352 LKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE-------QLRNELAQLLASRTQLEKAQVL----VEEAENKAL 420 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHH
Q ss_pred HHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhH
Q 002173 81 QEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKE 160 (956)
Q Consensus 81 e~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KE 160 (956)
.-++|+-+..-.+.+=...-++-.+.+.+-.|.|+-++..|+.--....+..+.|...=.....-|-........|+.-+
T Consensus 421 ~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~ 500 (980)
T KOG0980|consen 421 AAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLR 500 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HhHHHHHHHhhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHH
Q 002173 161 QKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAED 209 (956)
Q Consensus 161 keLl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~kRKs~ee 209 (956)
+||.-+..++..=.+. +..+.-.--....+|+..+.+|=+.+.+
T Consensus 501 ~El~~l~~e~~~lq~~-----~~~~~qs~~~~~~~l~~~l~~KD~~~~~ 544 (980)
T KOG0980|consen 501 QELALLLIELEELQRT-----LSNLAQSHNNQLAQLEDLLKQKDRLAAE 544 (980)
T ss_pred HHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHhhHHHHHH
No 100
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=58.81 E-value=3.2e+02 Score=31.45 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=98.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 002173 291 IKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 370 (956)
Q Consensus 291 lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDE 370 (956)
|-..|+.-...|.+---+++.+.-+|..-..++.|+++ +...+=|+.+++|..+|+..++ .+++++++.|.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr--~rVrq~V~hVqaqEreLLe~v~------~rYqR~y~ema~ 75 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIR--ARVRQVVAHVQAQERELLEAVE------ARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 34455666667777778899999999999999999998 4567889999999999997665 578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 002173 371 KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 422 (956)
Q Consensus 371 KR~eL~KEa~~I~eErE~lek~~~~EeerLK~EK~~~r~~~krelEsL~~ek 422 (956)
+--.|..=+.+|..==--++|+++.-.| +|-.+|.-.+..-|+.|+.++
T Consensus 76 ~L~~LeavLqRir~G~~LVekM~~YASD---QEVLdMh~FlreAL~rLrqee 124 (324)
T PF12126_consen 76 QLGRLEAVLQRIRTGGALVEKMKLYASD---QEVLDMHGFLREALERLRQEE 124 (324)
T ss_pred HHhHHHHHHHHHHhHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999998777777887776555 577788888888888777643
No 101
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=57.17 E-value=70 Score=35.36 Aligned_cols=82 Identities=26% Similarity=0.365 Sum_probs=66.8
Q ss_pred hhHHHHH-----HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002173 324 GELSVLE-----IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 398 (956)
Q Consensus 324 ~E~lrLQ-----seLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~Eee 398 (956)
.=+-+|| |.||+-.+.||-.-+++.+|-+.|..+-+..+.|++.+.+.-..|+.|.-.+.+.+..+. .|-.
T Consensus 119 AGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~----~ev~ 194 (290)
T COG4026 119 AGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP----GEVY 194 (290)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hHHH
Confidence 3445566 899999999999999999999999999999999999999999999999988887765543 4566
Q ss_pred hhHHHHHHHHH
Q 002173 399 SLRQERDAMRD 409 (956)
Q Consensus 399 rLK~EK~~~r~ 409 (956)
+|+..-+.+.+
T Consensus 195 ~L~~r~~ELe~ 205 (290)
T COG4026 195 DLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHhcc
Confidence 67766665544
No 102
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=56.93 E-value=2.2e+02 Score=28.72 Aligned_cols=99 Identities=23% Similarity=0.255 Sum_probs=56.5
Q ss_pred hHHHhHHHHHHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHH
Q 002173 3 ENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE 82 (956)
Q Consensus 3 e~a~kk~~EvEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLqe~ 82 (956)
+.|+-+..++++++..++......-.--..+..|...+|+.=+.+.-..-..+.--+..+.....-- -..++++..
T Consensus 10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~l~rriq~L 85 (143)
T PF12718_consen 10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----QLNRRIQLL 85 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----HHHhhHHHH
Confidence 5788888888888888877776666666666666666666666665555555444443333322111 344455555
Q ss_pred HHhHHHHHHhhhhhhHhhHhhHH
Q 002173 83 HERLLDAQTLLNEREDHILSKLQ 105 (956)
Q Consensus 83 eeRL~d~QrlLNqREE~~nE~d~ 105 (956)
++.|-.....|..-.+.+.+.+.
T Consensus 86 Eeele~ae~~L~e~~ekl~e~d~ 108 (143)
T PF12718_consen 86 EEELEEAEKKLKETTEKLREADV 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444444443333
No 103
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=54.84 E-value=4.4e+02 Score=31.49 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=8.0
Q ss_pred HHHHHHHHHhhhh
Q 002173 559 EEIQAESERLKKL 571 (956)
Q Consensus 559 e~f~~~vEklK~c 571 (956)
.-|...+..|+.|
T Consensus 430 ~p~~~el~~l~~~ 442 (582)
T PF09731_consen 430 RPFEDELRALKEL 442 (582)
T ss_pred CCHHHHHHHHHHh
Confidence 4566666666666
No 104
>PRK11281 hypothetical protein; Provisional
Probab=53.02 E-value=7e+02 Score=33.24 Aligned_cols=121 Identities=18% Similarity=0.174 Sum_probs=64.9
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHH-----------HhhchHHHHHHHh
Q 002173 61 KEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEA-----------SRANVEEKFKALN 129 (956)
Q Consensus 61 ~E~~i~kQRe~L~EweKkLqe~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEe-----------akkkie~~~~~Lk 129 (956)
.|..+..-...|.+|+.-|.+....|...|...-..-.++.++.+.+......|.. .+..+..+...|+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 77777777777888888888877777777666655556666666666666665532 2333444444444
Q ss_pred hhhhhhhHhHHHHHhh----HHHHHHHHHHHHHhHHhHHHHHHHhhhhhhHHHHHH
Q 002173 130 EEKSNLDLTLVSLLKR----EEAVIEREASLQKKEQKLLVSQETLASKESNEIQKI 181 (956)
Q Consensus 130 eke~dl~~rl~~L~~r----Eke~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKL 181 (956)
-+-+-...-+.+-+.+ -...+-....+...|..+..||+.++.|=..+-++-
T Consensus 206 ~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~ 261 (1113)
T PRK11281 206 AQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKT 261 (1113)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222222221111 112233334444555555566666665544444443
No 105
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=51.02 E-value=3.8e+02 Score=29.67 Aligned_cols=55 Identities=16% Similarity=0.140 Sum_probs=29.3
Q ss_pred hhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHhhh
Q 002173 40 VVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLN 94 (956)
Q Consensus 40 VEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLqe~eeRL~d~QrlLN 94 (956)
+.++...+..+...|.++...++..+..-+..+..++..+...+..+...+..++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~ 182 (423)
T TIGR01843 128 IKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE 182 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555556666655555555555555555555555544444333
No 106
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=50.53 E-value=5.7e+02 Score=31.54 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhH
Q 002173 461 CIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDR 528 (956)
Q Consensus 461 ~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~ 528 (956)
.+.++.+.++..|.+=-+.|+..-..- ..+|..|.-|+..|-.|.+.+--.+.-|+.
T Consensus 321 ~L~~~I~dL~~ql~e~~r~~e~~L~~k-----------d~~i~~mReec~~l~~Elq~LlD~ki~Ld~ 377 (546)
T KOG0977|consen 321 ALEKRIEDLEYQLDEDQRSFEQALNDK-----------DAEIAKMREECQQLSVELQKLLDTKISLDA 377 (546)
T ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhhH-----------HHHHHHHHHHHHHHHHHHHHhhchHhHHHh
Confidence 455677788888888888887643322 234555555666666665555555555554
No 107
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=50.14 E-value=4e+02 Score=29.58 Aligned_cols=91 Identities=24% Similarity=0.306 Sum_probs=58.4
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 002173 347 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFM 426 (956)
Q Consensus 347 LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerLK~EK~~~r~~~krelEsL~~ekEsF~ 426 (956)
|.-|.+-++......+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++. +...+..+++...
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e----~~~~~~~~~~~L~ 169 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE----EGQELSSKREELK 169 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 334444445555555555555666666666666666666666666666666666666655543 4566778888888
Q ss_pred HhhhhhhhhHHHHHH
Q 002173 427 NKMVHEHSEWFTKIQ 441 (956)
Q Consensus 427 ~kM~hErs~~~eKiq 441 (956)
.+|.-+=...++++-
T Consensus 170 ~~l~~ell~~yeri~ 184 (239)
T COG1579 170 EKLDPELLSEYERIR 184 (239)
T ss_pred HhcCHHHHHHHHHHH
Confidence 888877666666654
No 108
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.75 E-value=1.9e+02 Score=35.86 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=50.0
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002173 310 NCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVE 385 (956)
Q Consensus 310 ~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eE 385 (956)
..-...++-.+.|-++|.+.=.+||.+|++++.+-..+-.+++ .+.+-.+|-+.+|..-..|++++..=...
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKKKR 496 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666677777777888888888888888877776 45556677778888878787776544333
No 109
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=47.30 E-value=9e+02 Score=32.86 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=81.5
Q ss_pred HhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 002173 446 DFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQR 525 (956)
Q Consensus 446 d~l~d~ElqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~ 525 (956)
|-+++--.++++|+..+..+ +|..+.+..+.+.......|+... ...++-++..|..+++-++..+..
T Consensus 992 ~~l~~~~~~er~l~dnl~~~------~l~~q~~e~~re~~~ld~Qi~~~~------~~~~~ee~~~L~~~~~~l~se~~~ 1059 (1294)
T KOG0962|consen 992 QKIRNQYQRERNLKDNLTLR------NLERKLKELERELSELDKQILEAD------IKSVKEERVKLEEEREKLSSEKNL 1059 (1294)
T ss_pred HHHHhHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHhhhHhhH
Confidence 34566667778888777664 344455555666666666665544 556788999999999999999999
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhhHhHHhh
Q 002173 526 RDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDY 580 (956)
Q Consensus 526 le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vEklK~ckncg~~~d~ 580 (956)
+-++..++...|.-+...=.+ .+-+......|..|+..---=.+|+++|.....
T Consensus 1060 ~lg~~ke~e~~i~~~k~eL~~-~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~a 1113 (1294)
T KOG0962|consen 1060 LLGEMKQYESQIKKLKQELRE-KDFKDAEKNYRKALIELKTTELSNKDLDKYYKA 1113 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998877543221 122333344555555544444567777777633
No 110
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=47.14 E-value=5.2e+02 Score=30.06 Aligned_cols=15 Identities=7% Similarity=0.178 Sum_probs=6.3
Q ss_pred hHHHHHHHHhhhHHH
Q 002173 195 EFEAELAIKYKLAED 209 (956)
Q Consensus 195 EFElElE~kRKs~ee 209 (956)
..+-+.+..+..++.
T Consensus 359 ~L~Re~~~~~~~Y~~ 373 (498)
T TIGR03007 359 QLNRDYEVNKSNYEQ 373 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 111
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.76 E-value=2.2e+02 Score=29.59 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhh
Q 002173 59 EEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 135 (956)
Q Consensus 59 ea~E~~i~kQRe~L~EweKkLqe~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl 135 (956)
.+.+..+...|++|.+-.|.--+...+|...-.-|...+..+.+....+..++.++...+.+|..-...|+++...+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788899999999999888899999998888888888888888888888888877777766666666555444
No 112
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.70 E-value=3e+02 Score=34.73 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHhhhHH
Q 002173 193 QSEFEAELAIKYKLAE 208 (956)
Q Consensus 193 K~EFElElE~kRKs~e 208 (956)
.+.|-.+|.+....+.
T Consensus 388 lStfS~~m~~~~~Il~ 403 (782)
T PRK00409 388 LSTFSGHMTNIVRILE 403 (782)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4556666666554443
No 113
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=45.66 E-value=3.3e+02 Score=27.40 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=30.3
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 002173 315 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVET 351 (956)
Q Consensus 315 ~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEa 351 (956)
.++.++.|-.+|++|=..|=.-|.+||..-..|=-++
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 4467888999999999999999999998877765444
No 114
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=45.43 E-value=4.9e+02 Score=32.95 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=51.9
Q ss_pred hhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhHHhHHHHHHHhhhhhhHHH
Q 002173 99 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEI 178 (956)
Q Consensus 99 ~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KEkeLl~leEKL~aRE~~EI 178 (956)
++++..+.+--=..-++.|+..+......+..--.+|...-..+-.+..++......++....+|....++|..+....+
T Consensus 489 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 568 (782)
T PRK00409 489 NAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL 568 (782)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333333333333333333333444445555555555566666666666666666
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHH
Q 002173 179 QKIIANHESALRVKQSEFEAELAIK 203 (956)
Q Consensus 179 QKLldeh~a~L~~KK~EFElElE~k 203 (956)
+++..+.+.+|..-+.+.+.=+...
T Consensus 569 ~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 569 EEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655544444333
No 115
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=45.31 E-value=2.1e+02 Score=26.12 Aligned_cols=67 Identities=28% Similarity=0.395 Sum_probs=50.3
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 002173 295 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 371 (956)
Q Consensus 295 lEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEK 371 (956)
+++..++=.++..++-.+=++|-.++ .++-.-|.++|++-..+.+.+..|+...+..+.+-+.|-.+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~e----------l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKE----------LKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666665554 88888999999999999999999998888888887766543
No 116
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=43.91 E-value=3.3e+02 Score=26.82 Aligned_cols=100 Identities=27% Similarity=0.286 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 002173 285 KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 364 (956)
Q Consensus 285 KEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~E 364 (956)
+..+..+...+...+..+..+-.....++++.+.-=---.+-..-=..||.+...++.+...|-.+++..+.....-+.-
T Consensus 16 ~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s 95 (132)
T PF07926_consen 16 KEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555566666666666777777777764421111111122235677777888888888888888888777777777
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Q 002173 365 WEMIDEKREELRKEAERVAVERV 387 (956)
Q Consensus 365 WE~LDEKR~eL~KEa~~I~eErE 387 (956)
|+ +-+..|.++...+..-..
T Consensus 96 w~---~qk~~le~e~~~~~~r~~ 115 (132)
T PF07926_consen 96 WE---EQKEQLEKELSELEQRIE 115 (132)
T ss_pred HH---HHHHHHHHHHHHHHHHHH
Confidence 75 345555555555444333
No 117
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.79 E-value=3.7e+02 Score=28.37 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhH
Q 002173 289 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGEL 326 (956)
Q Consensus 289 ~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~ 326 (956)
..++..+.++.+.++.-...|...+..|..++..|.+-
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34445555555555555555555555555555555443
No 118
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=43.26 E-value=6.6e+02 Score=30.13 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 002173 287 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 364 (956)
Q Consensus 287 ei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~E 364 (956)
.|...+..|+--++.+....-.....+.+|..+..|+.. +..+|-.+|..-+...++|-+.+..|+.+.++-|.+
T Consensus 172 ~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk---~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 172 QLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK---TLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333333333344444444444555566666655544 446777777777888888888888888888877654
No 119
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.97 E-value=2.8e+02 Score=28.06 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 002173 286 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 317 (956)
Q Consensus 286 Eei~~lK~dlEK~ra~~e~qk~qi~ee~E~Lk 317 (956)
+++..|..+|..++..+..-...+......|.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333333333
No 120
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=41.51 E-value=4.4e+02 Score=27.78 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 002173 333 LKEELDVVRAQKLELMVETDKLQLEKA 359 (956)
Q Consensus 333 LKeEId~~R~Qke~LlkEad~LK~eKe 359 (956)
|+.+|+.++.....|....+.++..|.
T Consensus 74 l~~~~~~~~~~i~~l~~~i~~~~~~r~ 100 (188)
T PF03962_consen 74 LQKEIEELEKKIEELEEKIEEAKKGRE 100 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444444444444444444444333
No 121
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=40.75 E-value=1.1e+03 Score=31.93 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHhHH
Q 002173 456 RDLENCIEKRREELESSFREREKA-FEEEKMREF-QQISSLKEKAEKELEQVTLEIKRLDL 514 (956)
Q Consensus 456 reLE~~iqkRqEEiE~~L~EREk~-FEeek~~EL-~~IN~lkE~a~kE~Eev~lE~~rLek 514 (956)
-.|=..|....++.+..|.||++. ||+=-..++ .+|...--.|+.=+..|.-.|..+..
T Consensus 1085 ~~l~~~l~~~i~~~~~ll~e~er~l~E~~L~~~v~~~l~~ri~~A~~~v~~mN~~l~~~~~ 1145 (1353)
T TIGR02680 1085 AGLLARLEQEIAQRRELLTARERELLENHLQGEIARHLQSLILAAERQVAAMNTELAKRPT 1145 (1353)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456677888888889999999985 665544444 35566666667777777777776665
No 122
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=39.42 E-value=96 Score=33.51 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=19.3
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhh
Q 002173 486 REFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRR 526 (956)
Q Consensus 486 ~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~l 526 (956)
+++..+-+.-..+.++|.++..|.+.|+.||+-+..+|+..
T Consensus 38 ~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~ 78 (228)
T PRK06800 38 KDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQF 78 (228)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555555555544444433
No 123
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=39.32 E-value=5.2e+02 Score=27.79 Aligned_cols=111 Identities=22% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHH
Q 002173 424 EFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKM--REFQQISSLKEKAEKE 501 (956)
Q Consensus 424 sF~~kM~hErs~~~eKiq~Erad~l~d~ElqkreLE~~iqkRqEEiE~~L~EREk~FEeek~--~EL~~IN~lkE~a~kE 501 (956)
+|+.+=.+++..-..++...-.+-...|+-.|.+|......+..+++..|-++++.+-.-+. ..|..|..+++...++
T Consensus 7 ~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~e 86 (206)
T PF14988_consen 7 EYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQERE 86 (206)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhHHHHHH--------HhhhhhhhhHHHHHHH
Q 002173 502 LEQVTLEIKRLDLERME--------INMDRQRRDREWAELN 534 (956)
Q Consensus 502 ~Eev~lE~~rLekER~E--------i~~~ke~le~e~aEm~ 534 (956)
|..+.-++.++..+-.+ .-..|.+|+.+..+++
T Consensus 87 I~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~ 127 (206)
T PF14988_consen 87 IQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELK 127 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 124
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=38.29 E-value=4.6e+02 Score=26.93 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHH
Q 002173 75 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREA 154 (956)
Q Consensus 75 weKkLqe~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~ 154 (956)
|+++-....+-|-..++--.-=+.||..-.+.|...+..++.+-.-.+-+.+.+-.-+..|..--..+..=+-+++.+.+
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777778888888887666667789999999999999988888888888887777777777777777777788888888
Q ss_pred HHHHhHHhHHHHHHHhhhhhh
Q 002173 155 SLQKKEQKLLVSQETLASKES 175 (956)
Q Consensus 155 ~Le~KEkeLl~leEKL~aRE~ 175 (956)
.-+.-.++|-..++++..=|.
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888765443
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=37.27 E-value=4.5e+02 Score=32.79 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=12.5
Q ss_pred HhhhhhhhhHHHHHHHHHHHh
Q 002173 427 NKMVHEHSEWFTKIQQERADF 447 (956)
Q Consensus 427 ~kM~hErs~~~eKiq~Erad~ 447 (956)
.++.|||..-.++|-++|+++
T Consensus 680 M~ve~eRr~eqeRihreReel 700 (940)
T KOG4661|consen 680 MKVEEERRDEQERIHREREEL 700 (940)
T ss_pred HHHHHhhcchhhhhhhhHHHH
Confidence 344566666666666666654
No 126
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=35.48 E-value=7e+02 Score=31.67 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=4.5
Q ss_pred hhhHHHHHHH
Q 002173 193 QSEFEAELAI 202 (956)
Q Consensus 193 K~EFElElE~ 202 (956)
.+.|-.+|.+
T Consensus 383 LStfS~~m~~ 392 (771)
T TIGR01069 383 LSTFSGHMKN 392 (771)
T ss_pred hhHHHHHHHH
Confidence 3444444444
No 127
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=35.34 E-value=6e+02 Score=27.36 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=26.7
Q ss_pred HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 002173 346 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL 400 (956)
Q Consensus 346 ~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerL 400 (956)
.|.+|.+.|+......++-=..+....+.|+.....|..-+..+.-++..-.+.|
T Consensus 60 ~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 60 QLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444455555555555555555555555554444443
No 128
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=34.98 E-value=3.3e+02 Score=30.46 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=15.5
Q ss_pred HHhHHHHHHHhhhhhhhHHHHhhcchhH
Q 002173 5 AQKKFAEAEAKLHAAESLQAEANRYHRS 32 (956)
Q Consensus 5 a~kk~~EvEaKL~AAeAklAEa~Rk~s~ 32 (956)
+++.+.+++.+|.+|+..+.+--.++..
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~ 202 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKV 202 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445555666666666666555554433
No 129
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=33.83 E-value=9.4e+02 Score=30.59 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=51.2
Q ss_pred HhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhHHhHHHHHHHhhhhhhHH
Q 002173 98 DHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE 177 (956)
Q Consensus 98 E~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KEkeLl~leEKL~aRE~~E 177 (956)
.++++..+.+-.-+.-++.|+..+......+.+--.+|......+-.+..++......++....+|....++|..+....
T Consensus 483 S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 562 (771)
T TIGR01069 483 SYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562 (771)
T ss_pred cHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555544433333333333333333334444444555555555555555555556665556
Q ss_pred HHHHHHHhHHHHhhhhhhHHH
Q 002173 178 IQKIIANHESALRVKQSEFEA 198 (956)
Q Consensus 178 IQKLldeh~a~L~~KK~EFEl 198 (956)
++++-.+.+.++..-+.+.+.
T Consensus 563 ~~~a~~ea~~~~~~a~~~~~~ 583 (771)
T TIGR01069 563 KLELEKEAQEALKALKKEVES 583 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666655555555544444333
No 130
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=33.14 E-value=9.8e+02 Score=29.20 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=43.7
Q ss_pred HHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 002173 232 LLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 309 (956)
Q Consensus 232 l~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi 309 (956)
+....+.++.++..+..|-+.+...++.++|-.+.|....- .-+.+|.+..+.........+.....|++|+..|
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~---vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQD---VWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34566777777778888888888888888877777764432 2244444433433334444444444455555443
No 131
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=33.01 E-value=2.7e+02 Score=33.82 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHH
Q 002173 328 VLEIKLKEELDVVRAQKLELMVETDKLQLE 357 (956)
Q Consensus 328 rLQseLKeEId~~R~Qke~LlkEad~LK~e 357 (956)
-.|.=||--||+.|.|..-+.-|-.+||-+
T Consensus 507 niq~llkva~dnar~qekQiq~Ek~ELkmd 536 (641)
T KOG3915|consen 507 NIQGLLKVAIDNARAQEKQIQLEKTELKMD 536 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999998887776666543
No 132
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.62 E-value=3e+02 Score=26.20 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=32.8
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 002173 308 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 362 (956)
Q Consensus 308 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE 362 (956)
+|..+.+-+..++=|=.|+----..|.+|++.+|+....|..|.+.||++...|.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444456666777777777777777777777766543
No 133
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=32.13 E-value=7.1e+02 Score=27.30 Aligned_cols=119 Identities=26% Similarity=0.362 Sum_probs=66.3
Q ss_pred HHHHHHHHhHHhHHHHHHHhhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHH
Q 002173 151 EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREE 230 (956)
Q Consensus 151 ~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~kRKs~eeEle~K~~~~E~rEvel~h~Ee 230 (956)
..-..|-++|.+|-..+++..+-|+.- ..| ++++...-..+. -|...++
T Consensus 85 EVarkL~iiE~dLE~~eeraE~~Es~~-~eL--------------------------eEe~~~~~~nlk----~l~~~ee 133 (205)
T KOG1003|consen 85 EVARKLVIIEGELERAEERAEAAESQS-EEL--------------------------EEDLRILDSNLK----SLSAKEE 133 (205)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-HHH--------------------------HHHHHHhHhHHH----HHHHHHH
Confidence 556678888999988888888877621 112 222222111111 1333455
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 002173 231 SLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 303 (956)
Q Consensus 231 kl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e 303 (956)
++..++-..+.+++.+.+|=+.-+.+-... |++....+|.+..=-..+...++....++.+|-.+..+++
T Consensus 134 ~~~q~~d~~e~~ik~ltdKLkEaE~rAE~a---ERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 134 KLEQKEEKYEEELKELTDKLKEAETRAEFA---ERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666666666666666555555444443 3555555555554455555666666666666666555543
No 134
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=31.55 E-value=9.5e+02 Score=28.56 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=8.3
Q ss_pred hHHHHHHHH-HHhhhhHHHHhh
Q 002173 238 DLEVQSRAL-VDKEKDLVERSH 258 (956)
Q Consensus 238 aLe~k~~~l-kEKEkdL~~Ksk 258 (956)
|++++.++| ++.|.|-..+..
T Consensus 111 AaE~khrKli~dLE~dRe~haq 132 (561)
T KOG1103|consen 111 AAEKKHRKLIKDLEADREAHAQ 132 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 334444432 334444444433
No 135
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=31.33 E-value=1.5e+03 Score=30.83 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=27.4
Q ss_pred CCCCCccccccccCCCCCCCcccceeeeeeeeeeeceee
Q 002173 807 SNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTC 845 (956)
Q Consensus 807 ~~~~~~~~~~~s~nqtqg~~ee~~~~~~d~~i~isevtc 845 (956)
-.|+++-+...+..+-.++ .-.=+|-|++.|||-.||-
T Consensus 1127 V~~s~~~~l~~~~~~~k~~-~~~~il~i~k~~~v~~vt~ 1164 (1317)
T KOG0612|consen 1127 VIVSSKKILFYVSEQDKEQ-SGPLILDIKKLFHVRQVTQ 1164 (1317)
T ss_pred EeecccceEeeeccccccc-cchhhhhhhhceeEEeecc
Confidence 4567777777777777773 2234677889999999984
No 136
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=31.22 E-value=5.2e+02 Score=34.07 Aligned_cols=12 Identities=8% Similarity=-0.263 Sum_probs=5.1
Q ss_pred HHHHHHHHhhhh
Q 002173 560 EIQAESERLKKL 571 (956)
Q Consensus 560 ~f~~~vEklK~c 571 (956)
.++.-++.-..|
T Consensus 528 ~~~~~~~~~~~~ 539 (1021)
T PTZ00266 528 YFLKGMENGLSA 539 (1021)
T ss_pred hhhhhccccccc
Confidence 344444443333
No 137
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=30.59 E-value=17 Score=44.43 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred hhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 002173 225 LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDE 304 (956)
Q Consensus 225 l~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~ 304 (956)
++|.=+++.+.|..+++=..+|.+. .+|..+.+.|++.=..+.----.||.+....-.-+..+..|+..|..+...+.+
T Consensus 303 lR~~a~r~~klE~~ve~YKkKLed~-~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 303 LREKADRADKLENEVEKYKKKLEDL-EDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777666666664 356666666666554433333333333333333444444555544444444444
Q ss_pred HHHH
Q 002173 305 KKKQ 308 (956)
Q Consensus 305 qk~q 308 (956)
...+
T Consensus 382 ~~~~ 385 (713)
T PF05622_consen 382 ESRR 385 (713)
T ss_dssp ----
T ss_pred HHHH
Confidence 4333
No 138
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=29.56 E-value=5.2e+02 Score=29.47 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=41.6
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHH
Q 002173 485 MREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELM 541 (956)
Q Consensus 485 ~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~ 541 (956)
++|=.+.-|..+++..+++++.-.+-.+.+|-.+-.-+.+++.+.+..|+..++.|.
T Consensus 104 DNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 104 DNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567788888888899999888888888877666666666666666666555554
No 139
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.05 E-value=5.3e+02 Score=30.03 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002173 239 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKS 293 (956)
Q Consensus 239 Le~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~ 293 (956)
+..+-..|++.|++|-+|+..||.-- .-+.++|+..+.+|..|.-.+..-|+
T Consensus 350 vkekE~elke~Ekel~~kf~~lkr~h---~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLKRLH---QEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667888888888888877532 23445677777788777766665544
No 140
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=28.83 E-value=9.4e+02 Score=27.66 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 002173 459 ENCIEKRREELESSFREREKAFEE 482 (956)
Q Consensus 459 E~~iqkRqEEiE~~L~EREk~FEe 482 (956)
|..+..+..+++..|..+.++.+.
T Consensus 133 E~~lvq~I~~L~k~le~~~k~~e~ 156 (294)
T COG1340 133 ERELVQKIKELRKELEDAKKALEE 156 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666665543
No 141
>PRK10884 SH3 domain-containing protein; Provisional
Probab=28.35 E-value=4.2e+02 Score=28.52 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=38.7
Q ss_pred HhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhh
Q 002173 84 ERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD 136 (956)
Q Consensus 84 eRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~ 136 (956)
++..+.|..++++...+++-.....++..+|+.++.+++.....+...++++.
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777778888888888888888888888776666666555543
No 142
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=28.06 E-value=9.3e+02 Score=27.33 Aligned_cols=66 Identities=26% Similarity=0.407 Sum_probs=45.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhh--------------hhhhhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 002173 486 REFQQISSLKEKAEKELEQVTLEIKRLDLERMEINM--------------DRQRRDREWAELNNSIEELMVQRQKLEEQR 551 (956)
Q Consensus 486 ~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~--------------~ke~le~e~aEm~kdIeeL~~ls~KLk~QR 551 (956)
.-|++=|.+=.....||+.|.--+.+|++|....-. .+..++.+..-+.+-|+.|.+|-+-|+.+|
T Consensus 230 ~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er 309 (309)
T PF09728_consen 230 DTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER 309 (309)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 457777888889999999999999999999876543 444444445555555555555555555443
No 143
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=27.56 E-value=5.2e+02 Score=29.14 Aligned_cols=85 Identities=22% Similarity=0.310 Sum_probs=62.8
Q ss_pred HhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh----hhHHHHHH
Q 002173 256 RSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA----GELSVLEI 331 (956)
Q Consensus 256 Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER----~E~lrLQs 331 (956)
+--.+.+-|+.|+..=+.+ ..++.+=+..+.++..|--.+-+-|+..+..+...+.+|..+++=| +||-.|+.
T Consensus 156 r~~e~~~iE~~l~~ai~~~---~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~ 232 (267)
T PF10234_consen 156 RPLELNEIEKALKEAIKAV---QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEE 232 (267)
T ss_pred CCcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 3334556666666665555 4455555666777777777777778888888888899999998877 78999999
Q ss_pred HHHHHHHHHHHH
Q 002173 332 KLKEELDVVRAQ 343 (956)
Q Consensus 332 eLKeEId~~R~Q 343 (956)
+|++--+.|=..
T Consensus 233 EL~~lY~~Y~~k 244 (267)
T PF10234_consen 233 ELQKLYEIYVEK 244 (267)
T ss_pred HHHHHHHHHHHH
Confidence 999987776543
No 144
>PF14992 TMCO5: TMCO5 family
Probab=27.06 E-value=9.9e+02 Score=27.32 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=31.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhHHHHhhhh
Q 002173 196 FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLL 260 (956)
Q Consensus 196 FElElE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL~~Ksk~L 260 (956)
++-|+....-.+++. +..-.-.+-+|.++...|..-++-|..=+--+..+.+..+.++.++..+
T Consensus 37 Le~Eit~~~~~~~~~-e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 37 LEREITKMDHIADRS-EEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHHHHHHccccCch-hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 344444444444433 1112222666777766665444443333333333466666666655553
No 145
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=26.90 E-value=21 Score=43.57 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=0.0
Q ss_pred hhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHH-------h----chHHHHHHHHHHHHhHHHHHHhhhhhhHhhHhhH
Q 002173 36 KLQEVVAREDDLSRRIASFKADCEEKEREIIRER-------Q----SLSDRKKILQQEHERLLDAQTLLNEREDHILSKL 104 (956)
Q Consensus 36 KL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQR-------e----~L~EweKkLqe~eeRL~d~QrlLNqREE~~nE~d 104 (956)
..++++..-..|+.++-++..|....-..+..-- . .+.++..++...++.+...-..+..=..++....
T Consensus 194 ~~~el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le 273 (713)
T PF05622_consen 194 RCHELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELE 273 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566677666666666554443332211 1 1233333333333333222211222222223333
Q ss_pred HHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhHHhHHHHHHHhhhhhhHHHHHHHHH
Q 002173 105 QELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIAN 184 (956)
Q Consensus 105 ~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLlde 184 (956)
..+..+..+.+++...-+ +..+|+++-|-+..+...+...|.++...+..|+. +-.+.- .+ +.|.+
T Consensus 274 ~ei~~L~q~~~eL~~~A~-~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed----~~~lk~--------qv-k~Lee 339 (713)
T PF05622_consen 274 KEIDELRQENEELQAEAR-EARALRDELDELREKADRADKLENEVEKYKKKLED----LEDLKR--------QV-KELEE 339 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH--------HH-HHHHH
Confidence 334444444444333333 45667777777777666666666666655544432 222221 11 35667
Q ss_pred hHHHHhhhhhhHHHHHHH
Q 002173 185 HESALRVKQSEFEAELAI 202 (956)
Q Consensus 185 h~a~L~~KK~EFElElE~ 202 (956)
+++.|--.+..+|-++..
T Consensus 340 ~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 340 DNAVLLETKAMLEEELKK 357 (713)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777766643
No 146
>PRK10884 SH3 domain-containing protein; Provisional
Probab=26.16 E-value=7.2e+02 Score=26.78 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhHHhhHHH
Q 002173 333 LKEELDVVRAQKLELMVETDKL 354 (956)
Q Consensus 333 LKeEId~~R~Qke~LlkEad~L 354 (956)
|++++...+.+-..|-++.+++
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443433333
No 147
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=26.11 E-value=1.3e+03 Score=28.38 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=67.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002173 319 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 398 (956)
Q Consensus 319 teeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~Eee 398 (956)
+.+=|.|--.||++||.=--.|++=.+.-+.|. ++|-+|=--|=.+|-=--.=..|..++...|-.+++-.-+=-+
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei----QqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEI----QQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777889999998888888888888886 6788888888877765555566778888888888888888888
Q ss_pred hhHHHHHHH
Q 002173 399 SLRQERDAM 407 (956)
Q Consensus 399 rLK~EK~~~ 407 (956)
+||.||..-
T Consensus 482 lLkrEKe~~ 490 (527)
T PF15066_consen 482 LLKREKETR 490 (527)
T ss_pred HHHHHHHHH
Confidence 888888754
No 148
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=26.10 E-value=9.2e+02 Score=26.66 Aligned_cols=13 Identities=31% Similarity=0.335 Sum_probs=4.7
Q ss_pred hhhHHHHHHhHHH
Q 002173 265 NKLIAFEKEADLK 277 (956)
Q Consensus 265 ksLkaeEK~Le~e 277 (956)
++|...+|.++.+
T Consensus 197 ~~L~~~ek~~~~~ 209 (297)
T PF02841_consen 197 QQLTEKEKEIEEE 209 (297)
T ss_dssp TTS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 149
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.69 E-value=5.9e+02 Score=24.28 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 002173 326 LSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 389 (956)
Q Consensus 326 ~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~l 389 (956)
|..|+++.++=||.+ ..|.-|+++||.+......|-..+-.-|..|..+...+..++-+.
T Consensus 6 leqLE~KIqqAvdtI----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 6 FEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456888888888876 567778888887766666665555555555555555555554443
No 150
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=25.56 E-value=1.2e+03 Score=27.91 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=11.2
Q ss_pred HhHHHHHHHhhhhhhhhH
Q 002173 511 RLDLERMEINMDRQRRDR 528 (956)
Q Consensus 511 rLekER~Ei~~~ke~le~ 528 (956)
.|-.||.-+...-+++..
T Consensus 410 ~l~~ek~al~lqlErl~~ 427 (511)
T PF09787_consen 410 SLGSEKNALRLQLERLET 427 (511)
T ss_pred HHHhhhhhccccHHHHHH
Confidence 555666666666665554
No 151
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=25.48 E-value=7.2e+02 Score=25.21 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=46.4
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002173 484 KMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQA 563 (956)
Q Consensus 484 k~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~ 563 (956)
|+.=+..+......+..+|+++.++.+|+.+|-.-.+. ..+..++..+...|..+..-+..++.
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~----------------~~~~~i~~q~~~e~~~r~e~k~~l~~ 81 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNA----------------QQIQSIQQQFEQEKQERLEQKNQLLQ 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777888899999999999999888554433 33344445555555555555555666
Q ss_pred HHHHhhhhh
Q 002173 564 ESERLKKLE 572 (956)
Q Consensus 564 ~vEklK~ck 572 (956)
+++++..++
T Consensus 82 ql~qv~~L~ 90 (131)
T PF11068_consen 82 QLEQVQKLE 90 (131)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHhcCC
Confidence 666555554
No 152
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.18 E-value=9e+02 Score=25.88 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 002173 404 RDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 451 (956)
Q Consensus 404 K~~~r~~~krelEsL~~ekEsF~~kM~hErs~~~eKiq~Erad~l~d~ 451 (956)
-...++.|+.-++.|..-+..|+..|.. =...|-.+..+|-+|+.++
T Consensus 169 ~~~a~~~Y~~~v~~l~~~~~~~~~~~~~-~~~~~Q~lEe~Ri~~lk~~ 215 (239)
T cd07647 169 AEEADSAYKSSIGCLEDARVEWESEHAT-ACQVFQNMEEERIKFLRNA 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4457889999999999999999999965 3444455666777777654
No 153
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=23.61 E-value=1.2e+03 Score=27.08 Aligned_cols=204 Identities=27% Similarity=0.328 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH--------------HHHHHHHHHHHHHHHHH
Q 002173 279 SLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS--------------VLEIKLKEELDVVRAQK 344 (956)
Q Consensus 279 ~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~l--------------rLQseLKeEId~~R~Qk 344 (956)
..|++-.+-|..|-.+|++.+.+-..=+..+.+=+++...++.-..++. .=+..|=+-+-.+|.+-
T Consensus 2 rKL~SK~eAL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~N 81 (319)
T PF09789_consen 2 RKLQSKSEALLILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQN 81 (319)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHH
Confidence 3455666666666666666666655555555555544333333222222 11233444444555555
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 002173 345 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA-----VERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN 419 (956)
Q Consensus 345 e~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~-----eErE~lek~~~~EeerLK~EK~~~r~~~krelEsL~ 419 (956)
.-|..|.+.|++...--..+--+|-++-+..+-....+. .+|+.+=..+ +.++..- .++++++-++-
T Consensus 82 k~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qL----Ek~~~q~----~qLe~d~qs~l 153 (319)
T PF09789_consen 82 KKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQL----EKLREQI----EQLERDLQSLL 153 (319)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHH----HHHHHHH----HHHHHHHHHHH
Confidence 555555555555544444444444444433322222111 2333332222 1122111 23344444444
Q ss_pred hhHHHHHHhhhhhhhhHHHHH---HHHHHHhhhhhHhhhhhhHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHH
Q 002173 420 REREEFMNKMVHEHSEWFTKI---QQERADFLLGIEMQKRDLENC-IEKRREELESSFREREKAFEEEKMREFQQISSLK 495 (956)
Q Consensus 420 ~ekEsF~~kM~hErs~~~eKi---q~Erad~l~d~ElqkreLE~~-iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lk 495 (956)
-++++++ -||+..-.|+ -.|-+.+|.+=+..--+++.- |+| +||++|=+..++|+.---.+|+-.|
T Consensus 154 DEkeEl~----~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~EN------RyL~erl~q~qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 154 DEKEELV----TERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMEN------RYLKERLKQLQEEKELLKQTINKYK 223 (319)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444432 2444444433 345555555544432333332 333 5999999999999999999999888
Q ss_pred HHHHH
Q 002173 496 EKAEK 500 (956)
Q Consensus 496 E~a~k 500 (956)
-++.+
T Consensus 224 ~~le~ 228 (319)
T PF09789_consen 224 SALER 228 (319)
T ss_pred HHHHh
Confidence 77653
No 154
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=23.48 E-value=1.1e+03 Score=26.46 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 002173 335 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV-ERVVVSKSLKDERDSLRQERDAMRDQHKR 413 (956)
Q Consensus 335 eEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~e-ErE~lek~~~~EeerLK~EK~~~r~~~kr 413 (956)
+||+++-.|-.++.+....+......||++=+.|--+=++-++.-.+.+. .+..|-..++.+-++++.+ +....+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~ 120 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQN 120 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Confidence 58999999999999999999999999999988888877777777666643 3556777777777777555 55566666
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 002173 414 DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 451 (956)
Q Consensus 414 elEsL~~ekEsF~~kM~hErs~~~eKiq~Erad~l~d~ 451 (956)
+.-.++ .+-..|-+|.-.--++-++--..|..+|
T Consensus 121 ei~k~r----~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 121 EIKKVR----EENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 654444 4555565555555555555555555444
No 155
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.27 E-value=1.1e+03 Score=26.52 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=34.5
Q ss_pred HHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhHHhHHHHHHHhh
Q 002173 104 LQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 171 (956)
Q Consensus 104 d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KEkeLl~leEKL~ 171 (956)
.+.+.+...+++.+...+..+...+.+--.=+..+-+....=|.++-.+++.|+.-+..+..+.+++.
T Consensus 50 ar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 50 ARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445555544444444433333222222223333334455666777777777777777766655
No 156
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.26 E-value=1.8e+03 Score=29.05 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=44.6
Q ss_pred HHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhHHhHHHHHHHhhhhhhHHHHHHHH
Q 002173 104 LQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIA 183 (956)
Q Consensus 104 d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLld 183 (956)
...++..-++|++.=+..-+.+..|++.-++|+.+|-.++..--+..+-.-.......+|..+ ..++++|..
T Consensus 680 ~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~--------~~e~k~l~~ 751 (970)
T KOG0946|consen 680 EKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAA--------LSENKKLEN 751 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHH--------HHHHHHHHH
Confidence 344455555666666666677888888888888888866665555444444444455554433 345555554
Q ss_pred Hh
Q 002173 184 NH 185 (956)
Q Consensus 184 eh 185 (956)
++
T Consensus 752 ~q 753 (970)
T KOG0946|consen 752 DQ 753 (970)
T ss_pred HH
Confidence 43
No 157
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=23.24 E-value=8.7e+02 Score=25.34 Aligned_cols=67 Identities=21% Similarity=0.303 Sum_probs=35.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhHHHHh-------hhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002173 229 EESLLEREHDLEVQSRALVDKEKDLVERS-------HLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSS 301 (956)
Q Consensus 229 Eekl~kREqaLe~k~~~lkEKEkdL~~Ks-------k~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~ 301 (956)
|+.+-...++|..+...|.+--+-|..++ ..|.+.+-.|+..-+.+ -..+++-+..++.-+++.+..
T Consensus 84 Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l------~er~~e~l~~~~e~ver~k~~ 157 (158)
T PF09744_consen 84 EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRL------HERERELLRKLKEHVERQKDE 157 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444444444444444444 44555555555444444 345666777888888777654
No 158
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.62 E-value=5.3e+02 Score=26.56 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 002173 331 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 365 (956)
Q Consensus 331 seLKeEId~~R~Qke~LlkEad~LK~eKekFE~EW 365 (956)
.++++||+++..+-....+|++.||.|-+.+.+|.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777777777778888999999998888875
No 159
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=21.22 E-value=6.3e+02 Score=22.99 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHh
Q 002173 435 EWFTKIQQERADFLLGIEMQKRDLENCIEKRREELES 471 (956)
Q Consensus 435 ~~~eKiq~Erad~l~d~ElqkreLE~~iqkRqEEiE~ 471 (956)
.+...+...+..|+..|+-........|......++.
T Consensus 50 ~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~ 86 (127)
T smart00502 50 ELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ 86 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433333333
No 160
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.14 E-value=1.3e+03 Score=26.89 Aligned_cols=145 Identities=14% Similarity=0.229 Sum_probs=84.9
Q ss_pred HHHHhhhhh-hHHHHHHHHHhHHHHhhhhhhHHHH---HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHH
Q 002173 166 SQETLASKE-SNEIQKIIANHESALRVKQSEFEAE---LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEV 241 (956)
Q Consensus 166 leEKL~aRE-~~EIQKLldeh~a~L~~KK~EFElE---lE~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~ 241 (956)
++-++++-+ +.|+.+++-.-++...+.-.+-=.= |.+-++++...+..-..-+.+--.+|..-=++|..||.-|+.
T Consensus 187 ~es~vd~~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~ 266 (359)
T PF10498_consen 187 IESKVDPAEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINN 266 (359)
T ss_pred ccccCCHHHHHHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433 3444555544454444444444333 344556777778777888888888999999999999999999
Q ss_pred HHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHHH
Q 002173 242 QSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEK--KKQVNCAK 313 (956)
Q Consensus 242 k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~q--k~qi~ee~ 313 (956)
+++-+-..=.....+++.+.++ .+..-..+......|-.=-+++...|.+++.=-+++.+. +-+|.++.
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~---y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl 337 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEK---YKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQAL 337 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 9988877655555555544444 444444444444444444455555555555444444332 33454444
No 161
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=20.77 E-value=8.3e+02 Score=24.21 Aligned_cols=70 Identities=23% Similarity=0.252 Sum_probs=44.3
Q ss_pred hhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhHHhHHHHHHHhh
Q 002173 99 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 171 (956)
Q Consensus 99 ~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KEkeLl~leEKL~ 171 (956)
.+.+..+.+...+...-.+++.+.....+++...+++...-..+..+- .+....+-+||.++.-|.++|.
T Consensus 81 ~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~---tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 81 QLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK---TQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444455555555556666666666666666665555554433 3677888899999999888874
No 162
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=20.71 E-value=1.9e+03 Score=28.41 Aligned_cols=89 Identities=27% Similarity=0.360 Sum_probs=48.4
Q ss_pred HhHHHHHHhh---hhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhH
Q 002173 84 ERLLDAQTLL---NEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKE 160 (956)
Q Consensus 84 eRL~d~QrlL---NqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KE 160 (956)
.+|-+.+-.| ..||.++-+.+.-+..-..-||.-.+.++..-..+. .+|..|...++.+|.-+-..+...-..|
T Consensus 481 k~~~~a~gvldaaaarErrAsE~eas~r~R~~ALEara~ALeERAr~~e---~~L~~Re~a~a~Re~TLAahEaa~AE~E 557 (828)
T PF04094_consen 481 KRVDDARGVLDAAAARERRASEAEASLRAREEALEARAKALEERARAAE---RSLEERERAAAQREATLAAHEAAAAEEE 557 (828)
T ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3555555555 358888988888888888888877777755422221 2344444444444433333333333344
Q ss_pred HhHHHHHHHhhhhhh
Q 002173 161 QKLLVSQETLASKES 175 (956)
Q Consensus 161 keLl~leEKL~aRE~ 175 (956)
..|...++-++.|++
T Consensus 558 ~aLRLREeA~aER~~ 572 (828)
T PF04094_consen 558 SALRLREEALAERDR 572 (828)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 163
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=20.16 E-value=6.2e+02 Score=27.69 Aligned_cols=51 Identities=33% Similarity=0.440 Sum_probs=41.6
Q ss_pred HHhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 002173 518 EINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERL 568 (956)
Q Consensus 518 Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~vEkl 568 (956)
++..+-+.|..+|..+++-...|..=.++|.+-|.+|-+||+.|...+...
T Consensus 35 ~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~ 85 (228)
T PRK06800 35 EIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQ 85 (228)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888888888888889999999999998888776554
No 164
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.07 E-value=6.5e+02 Score=30.89 Aligned_cols=93 Identities=19% Similarity=0.211 Sum_probs=49.3
Q ss_pred hhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 002173 258 HLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEEL 337 (956)
Q Consensus 258 k~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEI 337 (956)
...++-++.++..+.........|- .++++..||..++++...-=.--..|.+.. .++-.|+.+.+...
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~----------~e~d~lk~e~~~~~ 232 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQKIK----------EEFDKLKKEGKADK 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 3344455555555555555555555 466677777766666552111111111221 24444556666666
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHH
Q 002173 338 DVVRAQKLELMVETDKLQLEKAKF 361 (956)
Q Consensus 338 d~~R~Qke~LlkEad~LK~eKekF 361 (956)
+.++.=+..|..+.+.++++-..+
T Consensus 233 ~~i~~~~~~l~~~~~~~~~~~~~l 256 (555)
T TIGR03545 233 QKIKSAKNDLQNDKKQLKADLAEL 256 (555)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 666666666666666666655444
Done!