Query 002173
Match_columns 956
No_of_seqs 37 out of 39
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 15:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.9 0.021 7.3E-07 54.6 36.6 79 2-80 1-79 (284)
2 1i84_S Smooth muscle myosin he 97.8 5.3E-05 1.8E-09 92.4 10.2 34 398-432 1147-1180(1184)
3 1i84_S Smooth muscle myosin he 97.7 5.2E-05 1.8E-09 92.4 9.2 28 315-342 1138-1165(1184)
4 3na7_A HP0958; flagellar bioge 94.8 3 0.0001 43.0 20.5 90 335-442 97-186 (256)
5 3vkg_A Dynein heavy chain, cyt 94.1 8.3 0.00028 52.7 27.1 42 331-372 2059-2100(3245)
6 3na7_A HP0958; flagellar bioge 94.0 4.7 0.00016 41.6 19.9 95 18-124 15-109 (256)
7 2dfs_A Myosin-5A; myosin-V, in 93.1 1.7 5.7E-05 53.6 17.0 92 331-446 987-1078(1080)
8 3vkg_A Dynein heavy chain, cyt 92.2 19 0.00065 49.4 26.2 23 391-413 2080-2102(3245)
9 2dfs_A Myosin-5A; myosin-V, in 90.4 10 0.00035 46.9 19.7 25 332-356 1020-1044(1080)
10 3oja_B Anopheles plasmodium-re 86.8 4.3 0.00015 45.1 12.1 18 332-349 562-579 (597)
11 3oja_B Anopheles plasmodium-re 83.4 17 0.00059 40.3 14.9 70 286-358 463-532 (597)
12 3oja_A Leucine-rich immune mol 74.9 54 0.0019 35.8 15.3 58 330-387 423-480 (487)
13 3q8t_A Beclin-1; autophagy, AT 70.0 29 0.001 31.6 9.8 63 502-564 6-68 (96)
14 3oja_A Leucine-rich immune mol 68.5 90 0.0031 34.1 15.2 52 498-549 433-484 (487)
15 2fxo_A Myosin heavy chain, car 60.9 1.1E+02 0.0038 28.7 15.6 40 331-370 79-118 (129)
16 2efr_A General control protein 59.9 1.4E+02 0.0048 29.6 19.2 63 83-145 76-138 (155)
17 2v71_A Nuclear distribution pr 57.5 1.7E+02 0.0059 29.9 16.5 69 279-358 105-177 (189)
18 3hnw_A Uncharacterized protein 57.1 65 0.0022 31.1 10.1 59 332-390 72-130 (138)
19 3o0z_A RHO-associated protein 52.5 2E+02 0.0067 29.1 15.8 72 6-77 12-90 (168)
20 3tnu_B Keratin, type II cytosk 43.5 2.1E+02 0.0072 26.7 11.1 93 97-209 35-128 (129)
21 2b9c_A Striated-muscle alpha t 40.8 2.7E+02 0.0091 27.2 13.1 34 12-45 15-48 (147)
22 1x8y_A Lamin A/C; structural p 37.9 2.2E+02 0.0074 25.3 9.9 74 128-210 8-82 (86)
23 3ghg_A Fibrinogen alpha chain; 37.8 2.8E+02 0.0097 32.4 12.8 137 177-337 50-189 (562)
24 3i00_A HIP-I, huntingtin-inter 33.3 2E+02 0.0069 27.3 9.2 63 287-359 16-78 (120)
25 1m1j_B Fibrinogen beta chain; 32.4 3.5E+02 0.012 31.0 12.5 34 89-122 126-159 (464)
26 3q8t_A Beclin-1; autophagy, AT 31.6 3E+02 0.01 25.0 12.4 41 345-385 14-54 (96)
27 3o0z_A RHO-associated protein 31.2 4.2E+02 0.015 26.7 16.2 112 269-380 10-135 (168)
28 3nmd_A CGMP dependent protein 28.7 1.3E+02 0.0043 26.8 6.4 48 125-172 18-65 (72)
29 3tnu_A Keratin, type I cytoske 28.2 2.6E+02 0.0089 26.2 9.0 121 69-209 8-130 (131)
30 3hnw_A Uncharacterized protein 24.0 3.8E+02 0.013 25.8 9.5 11 251-261 35-45 (138)
31 2jee_A YIIU; FTSZ, septum, coi 22.3 4.4E+02 0.015 23.8 9.0 55 308-362 14-68 (81)
32 1f5n_A Interferon-induced guan 21.5 9.8E+02 0.034 27.8 13.9 121 241-364 456-582 (592)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.87 E-value=0.021 Score=54.61 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=33.9
Q ss_pred hhHHHhHHHHHHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHH
Q 002173 2 VENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQ 80 (956)
Q Consensus 2 ~e~a~kk~~EvEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLq 80 (956)
|+...+|+.-....+..+...++++...-..+...+..+++.-..++...-.+..+.......+..-+..+..+...+.
T Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (284)
T 1c1g_A 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKAT 79 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444444444444444444444443333333333333333333333333333333333333333
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.77 E-value=5.3e-05 Score=92.38 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhh
Q 002173 398 DSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHE 432 (956)
Q Consensus 398 erLK~EK~~~r~~~krelEsL~~ekEsF~~kM~hE 432 (956)
..|..+...++..+.. +...+...-+...+|+.|
T Consensus 1147 ~~L~~ele~L~~~Iee-l~~vn~aq~el~~~~e~~ 1180 (1184)
T 1i84_S 1147 RDLSEELEALKTELED-TLDTTATQQELRGSDYKD 1180 (1184)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHH-HhhHHHHHHHHHhhhccc
Confidence 3444445555444432 333344444444445443
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.72 E-value=5.2e-05 Score=92.40 Aligned_cols=28 Identities=21% Similarity=0.111 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 002173 315 KLEAMKSEAGELSVLEIKLKEELDVVRA 342 (956)
Q Consensus 315 ~LkiteeER~E~lrLQseLKeEId~~R~ 342 (956)
.+.-...++.++..--..|++.|+.+..
T Consensus 1138 ~~~~le~q~~~L~~ele~L~~~Ieel~~ 1165 (1184)
T 1i84_S 1138 ARNKAEKQKRDLSEELEALKTELEDTLD 1165 (1184)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444554445556666666543
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.80 E-value=3 Score=42.97 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 002173 335 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 414 (956)
Q Consensus 335 eEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerLK~EK~~~r~~~kre 414 (956)
.||+....+...|..+.-++-...+..+.+++.+....+.++.+ .+.++.+.++.-..+..+
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~------------------l~~~~~~~~~~~~e~~~e 158 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL------------------ALELESLVENEVKNIKET 158 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444443333333332 233444555555666677
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHH
Q 002173 415 VDSLNREREEFMNKMVHEHSEWFTKIQQ 442 (956)
Q Consensus 415 lEsL~~ekEsF~~kM~hErs~~~eKiq~ 442 (956)
+..|.-.|+.|...|...=...+++|..
T Consensus 159 ~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 159 QQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7778888888888887776666666654
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.08 E-value=8.3 Score=52.68 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHH
Q 002173 331 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKR 372 (956)
Q Consensus 331 seLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR 372 (956)
..|+.+++.|...-.--.+=..-|-.|+.|....=..|+...
T Consensus 2059 ~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A 2059 EQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQM 2100 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Confidence 334444444433333333333344444444444444444333
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.01 E-value=4.7 Score=41.57 Aligned_cols=95 Identities=9% Similarity=0.183 Sum_probs=55.7
Q ss_pred hhhhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHhHHHHHHhhhhhh
Q 002173 18 AAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNERE 97 (956)
Q Consensus 18 AAeAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweKkLqe~eeRL~d~QrlLNqRE 97 (956)
.-|+.++.+......+-..+.++++.-..|+.....+.++.+..+..+.+-..++.+-..++...+.+|..+.
T Consensus 15 ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~------- 87 (256)
T 3na7_A 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK------- 87 (256)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-------
Confidence 3344444444444444566777777777777777777777777777777666666666666666665554332
Q ss_pred HhhHhhHHHhhHhHHHHHHHhhchHHH
Q 002173 98 DHILSKLQELSRKEKELEASRANVEEK 124 (956)
Q Consensus 98 E~~nE~d~~lk~kEkeLEeakkkie~~ 124 (956)
+.+.+..++++++.+++.|...
T Consensus 88 -----~~kE~~aL~kEie~~~~~i~~l 109 (256)
T 3na7_A 88 -----SERELRSLNIEEDIAKERSNQA 109 (256)
T ss_dssp -----SSSHHHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555544444
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.06 E-value=1.7 Score=53.59 Aligned_cols=92 Identities=17% Similarity=0.314 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 002173 331 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 410 (956)
Q Consensus 331 seLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~lek~~~~EeerLK~EK~~~r~~ 410 (956)
..|.+||+..|.+-..+.+|-+.|++....... .|.+|-..|++ |-..|++..+++...
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~------------------e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKE------------------QNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Confidence 445555666666555566655555444444331 22344444433 444455555555544
Q ss_pred HHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 002173 411 HKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD 446 (956)
Q Consensus 411 ~krelEsL~~ekEsF~~kM~hErs~~~eKiq~Erad 446 (956)
+...-+.+. +.+-..|++++..+..-...||+.
T Consensus 1046 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1080)
T 2dfs_A 1046 IHDQAKEIT---ETMEKKLVEETKQLELDLNDERLR 1078 (1080)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444333 466666777776666666666654
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.19 E-value=19 Score=49.36 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=13.4
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHh
Q 002173 391 KSLKDERDSLRQERDAMRDQHKR 413 (956)
Q Consensus 391 k~~~~EeerLK~EK~~~r~~~kr 413 (956)
.-+.+|..|=...-..+..++..
T Consensus 2080 ~gL~~Ek~RW~~~~~~l~~~~~~ 2102 (3245)
T 3vkg_A 2080 DNLNSERGRWEQQSENFNTQMST 2102 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccccHHHHHHHHHHHHHh
Confidence 33556666666666666655554
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.43 E-value=10 Score=46.89 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHH
Q 002173 332 KLKEELDVVRAQKLELMVETDKLQL 356 (956)
Q Consensus 332 eLKeEId~~R~Qke~LlkEad~LK~ 356 (956)
.|.+.|..+..+...|....|+|..
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.78 E-value=4.3 Score=45.14 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhHH
Q 002173 332 KLKEELDVVRAQKLELMV 349 (956)
Q Consensus 332 eLKeEId~~R~Qke~Llk 349 (956)
+|++|+...+.+...|+.
T Consensus 562 ~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 562 ELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.43 E-value=17 Score=40.35 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 002173 286 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK 358 (956)
Q Consensus 286 Eei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eK 358 (956)
.++..++.++....+.+.....+|....+.+.+.+++..+ ....|++++.+.+.....+..+...++++.
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLAR---SSDNLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCC---HHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 4555566666666666666666666666666655443332 235566666666555555554444444443
No 12
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.91 E-value=54 Score=35.78 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002173 330 EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 387 (956)
Q Consensus 330 QseLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE 387 (956)
.+++-.|++..++.......+.+.|++++++-+++-+.+|..=++..-...+...++.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQ 480 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHH
Confidence 3444444444444455555555555555555555555555555544444444444433
No 13
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=70.00 E-value=29 Score=31.59 Aligned_cols=63 Identities=16% Similarity=0.320 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002173 502 LEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAE 564 (956)
Q Consensus 502 ~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~f~~~ 564 (956)
++.+..++..|..|-..+...-+.++.+.+.+...|..|...+..|..+-+.|.++++.|..+
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q 68 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345566666677777777777778888888888899999999999999999999999888543
No 14
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.48 E-value=90 Score=34.06 Aligned_cols=52 Identities=21% Similarity=0.258 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 002173 498 AEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEE 549 (956)
Q Consensus 498 a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~ 549 (956)
+.+.++.+..+.++|..|...+...-..++.+.++++-..-.+.++...|-.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444555666666555555555555443
No 15
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=60.91 E-value=1.1e+02 Score=28.74 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 002173 331 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 370 (956)
Q Consensus 331 seLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDE 370 (956)
.+|-..|..+-.+.+........|...|.+++.++..|-.
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555666666666666555443
No 16
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=59.94 E-value=1.4e+02 Score=29.59 Aligned_cols=63 Identities=10% Similarity=0.029 Sum_probs=48.0
Q ss_pred HHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhh
Q 002173 83 HERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKR 145 (956)
Q Consensus 83 eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~r 145 (956)
++.|-.+...|..=+-|+-...+.+..+|+.++.+.-.+.......+.=...|...+..|+.=
T Consensus 76 EeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 76 EEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555555666677788888888888888888888888888777777777888888777653
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=57.49 E-value=1.7e+02 Score=29.86 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHH
Q 002173 279 SLLQKEKEEVNIIKSDLQK----SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKL 354 (956)
Q Consensus 279 ~qL~~eKEei~~lK~dlEK----~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~L 354 (956)
..|....-+|....+|+|. .-+++++-..+.+.+.++...++ ++|.+ =+.++..-.-|.-|+-+|
T Consensus 105 ~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE----------~El~E-Ke~l~~~~QRLkdE~rDL 173 (189)
T 2v71_A 105 EQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLE----------SELDE-KESLLVSVQRLKDEARDL 173 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHHCCC----------
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443 23444555556666666666655 44442 333333344455555555
Q ss_pred HHHH
Q 002173 355 QLEK 358 (956)
Q Consensus 355 K~eK 358 (956)
+++-
T Consensus 174 k~El 177 (189)
T 2v71_A 174 RQEL 177 (189)
T ss_dssp ----
T ss_pred HHHH
Confidence 5543
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=57.14 E-value=65 Score=31.11 Aligned_cols=59 Identities=19% Similarity=0.090 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002173 332 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 390 (956)
Q Consensus 332 eLKeEId~~R~Qke~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eErE~le 390 (956)
+++++++.++.+...+.+|.-+||.+....-..-+.+...-++|+++...+..+-..|+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666667777777766666655555555555555555555555444443
No 19
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=52.55 E-value=2e+02 Score=29.06 Aligned_cols=72 Identities=18% Similarity=0.169 Sum_probs=51.1
Q ss_pred HhHHHHHHHhhhhh-------hhHHHHhhcchhHHhhhhHHhhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHH
Q 002173 6 QKKFAEAEAKLHAA-------ESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKK 77 (956)
Q Consensus 6 ~kk~~EvEaKL~AA-------eAklAEa~Rk~s~aeRKL~eVEaRE~~LrRerlSf~~Erea~E~~i~kQRe~L~EweK 77 (956)
++.+.|+-+||.+= .--.||+.-..+.++..+.|+..+=..|+..+.++..|+-..-..+.-+|.+.+-..-
T Consensus 12 ekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 12 QKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555431 1235788888899999999999999999998888888877777777766655443333
No 20
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.46 E-value=2.1e+02 Score=26.75 Aligned_cols=93 Identities=18% Similarity=0.278 Sum_probs=55.2
Q ss_pred hHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhh-HHHHHHHHHHHHHhHHhHHHHHHHhhhhhh
Q 002173 97 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKR-EEAVIEREASLQKKEQKLLVSQETLASKES 175 (956)
Q Consensus 97 EE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~r-Eke~~~~~~~Le~KEkeLl~leEKL~aRE~ 175 (956)
...|.+.-+.+..++-+|+..++. ...|...|++.-.+ +-++......|...|.+|..+ +
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~-----------~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~--------r 95 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQ-----------CANLQNAIADAEQRGELALKDARNKLAELEEALQKA--------K 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------H
Confidence 344566666666666666544433 33333333333221 223344444555555555433 5
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHH
Q 002173 176 NEIQKIIANHESALRVKQSEFEAELAIKYKLAED 209 (956)
Q Consensus 176 ~EIQKLldeh~a~L~~KK~EFElElE~kRKs~ee 209 (956)
.+++..+.++..-|+.|. -++.|+..-||.+|-
T Consensus 96 ~e~~~ql~EYq~LlnvKl-~Ld~EIatYRkLLEg 128 (129)
T 3tnu_B 96 QDMARLLREYQELMNTKL-ALDVEIATYRKLLEG 128 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHCc
Confidence 778888999998888875 578899999988763
No 21
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=40.82 E-value=2.7e+02 Score=27.17 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=20.7
Q ss_pred HHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhh
Q 002173 12 AEAKLHAAESLQAEANRYHRSAERKLQEVVARED 45 (956)
Q Consensus 12 vEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~ 45 (956)
++.+|-.|-++|.+|.-...+.+|..+-+|.|..
T Consensus 15 ~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~ 48 (147)
T 2b9c_A 15 AQERLATALQKLEEAEKAADESERGMKVIESRAQ 48 (147)
T ss_dssp GGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4455555666666666666666666666666654
No 22
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=37.91 E-value=2.2e+02 Score=25.30 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=45.1
Q ss_pred HhhhhhhhhHhHHHHHhh-HHHHHHHHHHHHHhHHhHHHHHHHhhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhh
Q 002173 128 LNEEKSNLDLTLVSLLKR-EEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKL 206 (956)
Q Consensus 128 Lkeke~dl~~rl~~L~~r-Eke~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~kRKs 206 (956)
|+...+.+..+++++-.+ +.++......+...|.+|..+ +.+++..+.++..-|++|. -+|+|+..-|+.
T Consensus 8 L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~--------r~e~~~ql~EYq~LlnvK~-~Le~EIatYRkL 78 (86)
T 1x8y_A 8 LQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEM--------RARMQQQLDEYQELLDIKL-ALDMEIHAYRKL 78 (86)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHH
Confidence 333344444444444332 224444555555555555544 5678888899988888875 478999999999
Q ss_pred HHHH
Q 002173 207 AEDE 210 (956)
Q Consensus 207 ~eeE 210 (956)
++-|
T Consensus 79 LEGE 82 (86)
T 1x8y_A 79 LEGE 82 (86)
T ss_dssp HHHH
T ss_pred HcCC
Confidence 9854
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.77 E-value=2.8e+02 Score=32.45 Aligned_cols=137 Identities=12% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHH---HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHHHHHHHHhhhhH
Q 002173 177 EIQKIIANHESALRVKQSEFEAELA---IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDL 253 (956)
Q Consensus 177 EIQKLldeh~a~L~~KK~EFElElE---~kRKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdL 253 (956)
+||-||+.|+--|..+..++=.+++ +.+++.+.=+..+...|..+-......+..+.+--.+|+.+...|+++
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKek---- 125 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRK---- 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHH----
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH----
Q ss_pred HHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 002173 254 VERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKL 333 (956)
Q Consensus 254 ~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseL 333 (956)
|..+..+|..=+-.|..+-.+|+++-+.|..|.+--.--+.+-=.-+=+...|.-+|-+|
T Consensus 126 --------------------VdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQL 185 (562)
T 3ghg_A 126 --------------------VIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQL 185 (562)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHH
Q ss_pred HHHH
Q 002173 334 KEEL 337 (956)
Q Consensus 334 KeEI 337 (956)
.|=|
T Consensus 186 eQv~ 189 (562)
T 3ghg_A 186 EQVI 189 (562)
T ss_dssp HHHH
T ss_pred HHHh
No 24
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=33.27 E-value=2e+02 Score=27.32 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 002173 287 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA 359 (956)
Q Consensus 287 ei~~lK~dlEK~ra~~e~qk~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKe 359 (956)
.|..|+.+|+.++..++.=+.........|+-- . +.|.-|++..|+++...+.|.+.|+.+.+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~------i----~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGH------V----SELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666554433333333333221 1 45667778888888888888888887665
No 25
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.43 E-value=3.5e+02 Score=30.98 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=17.8
Q ss_pred HHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchH
Q 002173 89 AQTLLNEREDHILSKLQELSRKEKELEASRANVE 122 (956)
Q Consensus 89 ~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie 122 (956)
.|..+++++..+.++...++.....||..+..|.
T Consensus 126 Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 126 IDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555554444443
No 26
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=31.59 E-value=3e+02 Score=25.01 Aligned_cols=41 Identities=32% Similarity=0.440 Sum_probs=22.1
Q ss_pred HHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002173 345 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVE 385 (956)
Q Consensus 345 e~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~~I~eE 385 (956)
..|..|-..|-++...-|+|.+.||.=.+.++.|+.....+
T Consensus 14 ~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 14 KELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 33444555555555555555566665555555555555443
No 27
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=31.21 E-value=4.2e+02 Score=26.69 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=56.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHH
Q 002173 269 AFEKEADLKKSLLQKEKEEVNIIK---SDLQKSLSSLDEKKKQVNCAKDKLEAMKSE-AGELSVLEIKLKEELDVVRAQK 344 (956)
Q Consensus 269 aeEK~Le~eK~qL~~eKEei~~lK---~dlEK~ra~~e~qk~qi~ee~E~LkiteeE-R~E~lrLQseLKeEId~~R~Qk 344 (956)
..+|.|..=...|..+-+....+| .++.+..+.++.....+..-.-.|...+.. -.++..||+.|-+|-..++...
T Consensus 10 ~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~s 89 (168)
T 3o0z_A 10 QLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDS 89 (168)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555433333 344444444443333322222222222221 1367888888888887666554
Q ss_pred H----------HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 002173 345 L----------ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAE 380 (956)
Q Consensus 345 e----------~LlkEad~LK~eKekFE~EWE~LDEKR~eL~KEa~ 380 (956)
+ .|..|++.++.--.+-+.|--.|-||-..|+||-.
T Consensus 90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 34455566665555555555555555555555443
No 28
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.74 E-value=1.3e+02 Score=26.83 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=40.0
Q ss_pred HHHHhhhhhhhhHhHHHHHhhHHHHHHHHHHHHHhHHhHHHHHHHhhh
Q 002173 125 FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 172 (956)
Q Consensus 125 ~~~Lkeke~dl~~rl~~L~~rEke~~~~~~~Le~KEkeLl~leEKL~a 172 (956)
..++.+-+..|..+.+.|..++.-+..++..|..|+.++..|+-.|..
T Consensus 18 mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 18 RGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777788888899999999999999999999999999988877654
No 29
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=28.25 E-value=2.6e+02 Score=26.22 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=52.1
Q ss_pred HhchHHHH-HHHHHHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHHHhhchHHHHHHHhhhhhhhhHhHHHHHhh-H
Q 002173 69 RQSLSDRK-KILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKR-E 146 (956)
Q Consensus 69 Re~L~Ewe-KkLqe~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEeakkkie~~~~~Lkeke~dl~~rl~~L~~r-E 146 (956)
|.++-.|= .|+.+.+......-..|..=...|.+.-+.+..++-+|+..++ ....|...|++.-.+ +
T Consensus 8 r~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~-----------~~~sLE~~l~e~e~~~~ 76 (131)
T 3tnu_A 8 RKDAEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLS-----------MKASLENSLEETKGRYC 76 (131)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHH
Confidence 44455543 3444444333332223333334455555666666666554433 333333333333222 2
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHhhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHH
Q 002173 147 EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAED 209 (956)
Q Consensus 147 ke~~~~~~~Le~KEkeLl~leEKL~aRE~~EIQKLldeh~a~L~~KK~EFElElE~kRKs~ee 209 (956)
-++...+..|...|.+|..+ +.+++..+.+|..-|++|. -++.|+..-||.+|-
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~--------r~em~~ql~EYq~Ll~vKl-~Ld~EIatYRkLLEG 130 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQL--------RCEMEQQNQEYKILLDVKT-RLEQEIATYRRLLEG 130 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHCc
Confidence 23334444444445544433 5678888999998888875 578899999998863
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.00 E-value=3.8e+02 Score=25.77 Aligned_cols=11 Identities=0% Similarity=-0.013 Sum_probs=5.3
Q ss_pred hhHHHHhhhhH
Q 002173 251 KDLVERSHLLE 261 (956)
Q Consensus 251 kdL~~Ksk~LK 261 (956)
..|+.|...++
T Consensus 35 ~~vd~km~ei~ 45 (138)
T 3hnw_A 35 SYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34455555444
No 31
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=22.33 E-value=4.4e+02 Score=23.85 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=29.9
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 002173 308 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 362 (956)
Q Consensus 308 qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEad~LK~eKekFE 362 (956)
+|..+-+.+..++-|=.|+-.--..|.++.+..|.....|..|...|+++...|.
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4444555454444444444444455555555566666666666666666655543
No 32
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=21.46 E-value=9.8e+02 Score=27.79 Aligned_cols=121 Identities=14% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh-h
Q 002173 241 VQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA-M 319 (956)
Q Consensus 241 ~k~~~lkEKEkdL~~Ksk~LKEkEksLkaeEK~Le~eK~qL~~eKEei~~lK~dlEK~ra~~e~qk~qi~ee~E~Lki-t 319 (956)
+..+-|.+-=+.......++-.-+++|...+|.++.+...-.+-..+...+..-..+.-.-+++|.+...+-..+|.. |
T Consensus 456 ~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~km 535 (592)
T 1f5n_A 456 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 535 (592)
T ss_dssp THHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHH-----HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 002173 320 KSEAGELSV-----LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 364 (956)
Q Consensus 320 eeER~E~lr-----LQseLKeEId~~R~Qke~LlkEad~LK~eKekFE~E 364 (956)
+.||.-+++ |..+||++=+.++.. +..+++.|+.|...+...
T Consensus 536 e~~~~~~~~e~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 536 ENDRVQLLKEQERTLALKLQEQEQLLKEG---FQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Done!