Query 002173
Match_columns 956
No_of_seqs 37 out of 39
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 15:29:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002173.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002173hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ap3a1 a.24.27.1 (A:12-196) H 77.7 17 0.0012 29.8 16.0 12 159-170 34-45 (185)
2 d1f5na1 a.114.1.1 (A:284-583) 34.8 1.6E+02 0.012 26.8 17.3 19 353-371 173-191 (300)
3 d1qvra2 c.37.1.20 (A:149-535) 15.2 2.1E+02 0.015 28.8 8.8 22 326-347 311-332 (387)
4 d1k4ta1 a.2.8.1 (A:641-712) Eu 14.0 3.1E+02 0.023 22.4 7.9 53 264-316 1-58 (72)
5 d1fxka_ a.2.5.1 (A:) Prefoldin 12.6 3.5E+02 0.025 22.2 8.2 80 2-81 3-104 (107)
6 d1f5na1 a.114.1.1 (A:284-583) 9.6 5.7E+02 0.042 22.8 23.0 13 179-191 68-80 (300)
7 d1nkpa_ a.38.1.1 (A:) Myc prot 9.1 2E+02 0.015 23.0 5.1 43 529-571 43-88 (88)
8 d1bjta_ e.11.1.1 (A:) DNA topo 8.1 2.1E+02 0.016 31.4 6.3 21 355-375 738-758 (760)
9 d1qvra2 c.37.1.20 (A:149-535) 7.5 5.8E+02 0.042 25.3 9.0 45 510-554 285-329 (387)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 6.7 5.9E+02 0.043 20.6 8.6 90 70-159 1-101 (107)
No 1
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=77.69 E-value=17 Score=29.85 Aligned_cols=12 Identities=17% Similarity=0.083 Sum_probs=4.3
Q ss_pred hHHhHHHHHHHh
Q 002173 159 KEQKLLVSQETL 170 (956)
Q Consensus 159 KEkeLl~leEKL 170 (956)
.+..+..+...+
T Consensus 34 ~e~~~~~~~~~~ 45 (185)
T d2ap3a1 34 LDEKKKKLTEDV 45 (185)
T ss_dssp HHHHHHTTTTGG
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 2
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.83 E-value=1.6e+02 Score=26.77 Aligned_cols=19 Identities=5% Similarity=0.001 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 002173 353 KLQLEKAKFEAEWEMIDEK 371 (956)
Q Consensus 353 ~LK~eKekFE~EWE~LDEK 371 (956)
.+......|...|+.+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~ 191 (300)
T d1f5na1 173 QAEEILQTYLKSKESMTDA 191 (300)
T ss_dssp THHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445566666555443
No 3
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=15.22 E-value=2.1e+02 Score=28.84 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 002173 326 LSVLEIKLKEELDVVRAQKLEL 347 (956)
Q Consensus 326 ~lrLQseLKeEId~~R~Qke~L 347 (956)
.+.-..+||++|+.+|.+.+..
T Consensus 311 ~l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 311 ILRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344467888888888876543
No 4
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.00 E-value=3.1e+02 Score=22.36 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=39.4
Q ss_pred HhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHhhh
Q 002173 264 ENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQ-----KSLSSLDEKKKQVNCAKDKL 316 (956)
Q Consensus 264 EksLkaeEK~Le~eK~qL~~eKEei~~lK~dlE-----K~ra~~e~qk~qi~ee~E~L 316 (956)
|+||......|...+.+|..-+.++..++.|.- +++..++-.+.++.--.++|
T Consensus 1 eKsMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL 58 (72)
T d1k4ta1 1 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQL 58 (72)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 578888889999999999998889988888775 55566665555555444443
No 5
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.58 E-value=3.5e+02 Score=22.17 Aligned_cols=80 Identities=16% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhHHHhHHHHHHHhhhhhhhHHHHhhcchhHHhhhhHHhhhhhhH----------------------HHHHHhHhhhhhh
Q 002173 2 VENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDD----------------------LSRRIASFKADCE 59 (956)
Q Consensus 2 ~e~a~kk~~EvEaKL~AAeAklAEa~Rk~s~aeRKL~eVEaRE~~----------------------LrRerlSf~~Ere 59 (956)
++....+|..+...|..+.+..+....-.+++++=|.+++.-.++ |....-++..+.+
T Consensus 3 lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~ 82 (107)
T d1fxka_ 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHhchHHHHHHHHH
Q 002173 60 EKEREIIRERQSLSDRKKILQQ 81 (956)
Q Consensus 60 a~E~~i~kQRe~L~EweKkLqe 81 (956)
.+++.+..-+..|.+|+++++.
T Consensus 83 ~l~~q~~~l~~~l~~~~~~l~~ 104 (107)
T d1fxka_ 83 TIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 6
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.58 E-value=5.7e+02 Score=22.79 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=5.8
Q ss_pred HHHHHHhHHHHhh
Q 002173 179 QKIIANHESALRV 191 (956)
Q Consensus 179 QKLldeh~a~L~~ 191 (956)
+.|.+.|..++..
T Consensus 68 eel~~~h~~~~~~ 80 (300)
T d1f5na1 68 QELLDLHRDSERE 80 (300)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344445444443
No 7
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.11 E-value=2e+02 Score=22.97 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=26.7
Q ss_pred HHHHHHhhHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHhhhh
Q 002173 529 EWAELNNSIEELMVQRQ---KLEEQRQLLHADREEIQAESERLKKL 571 (956)
Q Consensus 529 e~aEm~kdIeeL~~ls~---KLk~QRE~~~~ERe~f~~~vEklK~c 571 (956)
-++-+..-|+-+..|.. .|....+.+......+...+.+|.+|
T Consensus 43 K~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~gc 88 (88)
T d1nkpa_ 43 KVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555655555555544 44555566666667777777777776
No 8
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.09 E-value=2.1e+02 Score=31.45 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 002173 355 QLEKAKFEAEWEMIDEKREEL 375 (956)
Q Consensus 355 K~eKekFE~EWE~LDEKR~eL 375 (956)
+.+...|+++|...++++++-
T Consensus 738 ~~DL~~l~~~y~k~~~~~~e~ 758 (760)
T d1bjta_ 738 NTDLKAFEVGYQEFLQRDAEA 758 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 556678888888888887763
No 9
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=7.51 E-value=5.8e+02 Score=25.33 Aligned_cols=45 Identities=18% Similarity=0.367 Sum_probs=31.7
Q ss_pred HHhHHHHHHHhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002173 510 KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLL 554 (956)
Q Consensus 510 ~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~ 554 (956)
..++.+...+......+..+|...+..|+.+..+...|.+-|..+
T Consensus 285 ~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~l 329 (387)
T d1qvra2 285 KAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREI 329 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666677778888888888888888887777766543
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=6.72 E-value=5.9e+02 Score=20.63 Aligned_cols=90 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred hchHHHHHHHHHHHHhHHHHHHhhhhhhHhhHhhHHHhhHhHHHHHH-----------HhhchHHHHHHHhhhhhhhhHh
Q 002173 70 QSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEA-----------SRANVEEKFKALNEEKSNLDLT 138 (956)
Q Consensus 70 e~L~EweKkLqe~eeRL~d~QrlLNqREE~~nE~d~~lk~kEkeLEe-----------akkkie~~~~~Lkeke~dl~~r 138 (956)
+++++--..++..+..|......+.+-+-..+|+...++-++.==++ .+...+.....|+.+.+.|..+
T Consensus 1 ~~lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~ 80 (107)
T d1fxka_ 1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLR 80 (107)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHHHHHh
Q 002173 139 LVSLLKREEAVIEREASLQKK 159 (956)
Q Consensus 139 l~~L~~rEke~~~~~~~Le~K 159 (956)
+..|...++.+...-..+..+
T Consensus 81 i~~l~~q~~~l~~~l~~~~~~ 101 (107)
T d1fxka_ 81 EKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Done!