BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002175
(956 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 126/234 (53%), Gaps = 9/234 (3%)
Query: 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
MEG++ + G+ R + LF + + + V+ E+YNE LR+LL + +I
Sbjct: 98 MEGTAENPGINQRALQLLFS-EVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI 156
Query: 61 RLQSLESS----IELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIY 112
RL S L + +V + + +KV + +R + + N SH ++++ +
Sbjct: 157 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR 216
Query: 113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
+ TG KL+LVDLAGSE + G R+ + H+ KSLSALGDV+++L SR+
Sbjct: 217 GVDCSTGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQG 276
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
VP+ NS LT +L DSL SKTLM+V + P N SETL SL F+ R RS L
Sbjct: 277 HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 124/233 (53%), Gaps = 13/233 (5%)
Query: 3 GSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVF--ELYNEQLRELL-PQTGNGLA- 58
G+ + GL R ELF + D+ +F+F++ + ELY + L +LL P+ L
Sbjct: 99 GADSNPGLTPRAMSELFRIMKKDSN---KFSFSLKAYMVELYQDTLVDLLLPKQAKRLKL 155
Query: 59 --KIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIY 112
K + + S + + E +++ + R + N SHLI+ + I
Sbjct: 156 DIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIE 215
Query: 113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
NL T KLS VDLAGSE + +G ++ + + KSLSALGDV+S+L+S
Sbjct: 216 STNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQ 275
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTV 225
+PY N LT +++DSLG ++KTLM VNI P +N+ ET +SL ++SR RS V
Sbjct: 276 HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIV 328
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 113 bits (282), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 132/235 (56%), Gaps = 17/235 (7%)
Query: 3 GSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVF--ELYNEQLRELL-PQTGNGLAK 59
G + GL R +ELF++ D+ RF+F++ + ELY + L +LL P++ L K
Sbjct: 107 GHESNPGLTPRATKELFNILKRDS---KRFSFSLKAYMVELYQDTLVDLLLPKSARRL-K 162
Query: 60 IRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGND---VSKFNV------SHLIIMIH 110
+ ++ + V+ P+ + L+ + RG++ VS N+ SHLI+ +
Sbjct: 163 LEIKKDSKGMVFVENVTTIPISTLEELRMILE-RGSERRHVSGTNMNEESSRSHLILSVV 221
Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
I +L T KLS VDLAGSE + +G ++ + + KSLSALGDV+ +L+S
Sbjct: 222 IESIDLQTQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSG 281
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTV 225
+PY N LT +++DSLG ++KTLM VN+ P +N+ ET +SL ++SR R+ V
Sbjct: 282 NQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIV 336
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 121/236 (51%), Gaps = 23/236 (9%)
Query: 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAV--TVFELYNEQLREL------LPQ 52
M G+ + G F+ LFD NS +++ NF V + ELYNE++R+L LP
Sbjct: 107 MGGNKEEPGAIPNSFKHLFDAINS---SSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPL 163
Query: 53 TGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIM 108
+ I + L +V E S ++ F +R ++ N SH I M
Sbjct: 164 KEDKTRGIYVDGLS------MHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFM 217
Query: 109 IHIYYNNLITGENL--YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSS 166
+ I + +I + + KL+LVDLAGSE +GE + + + SLSALG V+S
Sbjct: 218 VRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISK 277
Query: 167 LTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
L +PY +S LT++L DSLG +SKTLM NI P + N ET+S+L ++ RA+
Sbjct: 278 LVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAK 333
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 5/156 (3%)
Query: 75 KVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 134
+VD L+ + ++S +R N+ S + SH + M+HI NL TGE KL+LVDLAGS
Sbjct: 194 QVDTILKKASKMRSTAATRSNERS--SRSHSVFMVHINGRNLHTGETSQGKLNLVDLAGS 251
Query: 135 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS---RKDIVPYENSMLTKVLADSLGE 191
E + + +GER+ + ++ KSLS LGDV+ +L + K +P+ NS LT +L SL
Sbjct: 252 ERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVG 311
Query: 192 SSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS 227
SKTLM VNI P+ ++SETL+SL F+S+ ST ++
Sbjct: 312 DSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 128/247 (51%), Gaps = 39/247 (15%)
Query: 1 MEGSSHD----RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-PQTGN 55
M G+S D RG+ R E++F S + A + V+ E+Y E++R+LL PQ N
Sbjct: 98 MMGTSIDDPDGRGVIPRIVEQIF-TSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDN 156
Query: 56 --------------GLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN 101
GL +I + S++ E +V++ +R + N
Sbjct: 157 LPVHEEKNRGVYVKGLLEIYVSSVQ--------------EVYEVMRRGGNARAVAATNMN 202
Query: 102 V----SHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSL 157
SH I +I I N+ TG +L LVDLAGSE + SG+ + + + KSL
Sbjct: 203 QESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSL 262
Query: 158 SALGDVLSSLTSRKDI-VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLN 216
SALG V+++LT K VPY +S LT++L +SLG +S+T +I+N P++ N +ETLS+L
Sbjct: 263 SALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLR 322
Query: 217 FSSRARS 223
F RA+S
Sbjct: 323 FGMRAKS 329
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 128/238 (53%), Gaps = 22/238 (9%)
Query: 9 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KI 60
G+ +F+ N T + E+YNE + +LL N GL +I
Sbjct: 164 GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 223
Query: 61 R--------LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 111
R + +S++L +E V+ L+ + L+S + N+ S + SH I +IH+
Sbjct: 224 RHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHL 281
Query: 112 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--- 168
+N TG + Y L+LVDLAGSE + G+R+ + ++ KSLSALGDV+ +L
Sbjct: 282 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPD 341
Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
S K +P+ NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 342 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 399
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 15/234 (6%)
Query: 1 MEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 57
MEG HD G+ R +++F+ S F+ V+ FE+Y +++R+LL + L
Sbjct: 95 MEGKLHDPEGMGIIPRIVQDIFNYIYS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNL 153
Query: 58 A----KIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMI 109
+ K R+ ++ E V +P E + +R V+ N SH I +I
Sbjct: 154 SVHEDKNRVPYVKGCTERF---VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLI 210
Query: 110 HIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS 169
++ N T + L KL LVDLAGSE + G + + ++ KSLSALG+V+S+L
Sbjct: 211 NVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE 270
Query: 170 RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
VPY +S +T++L DSLG + +T +++ P++ N SET S+L F RA++
Sbjct: 271 GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKT 324
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 15/234 (6%)
Query: 1 MEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 57
MEG HD G+ R +++F+ S F+ V+ FE+Y +++R+LL + L
Sbjct: 95 MEGKLHDPEGMGIIPRIVQDIFNYIYS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNL 153
Query: 58 A----KIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMI 109
+ K R+ ++ E V +P E + +R V+ N SH I +I
Sbjct: 154 SVHEDKNRVPYVKGCTERF---VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLI 210
Query: 110 HIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS 169
++ N T + L KL LVDLAGSE + G + + ++ KSLSALG+V+S+L
Sbjct: 211 NVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE 270
Query: 170 RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
VPY +S +T++L DSLG + +T +++ P++ N SET S+L F RA++
Sbjct: 271 GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKT 324
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 123/234 (52%), Gaps = 15/234 (6%)
Query: 1 MEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 57
MEG HD G+ R +++F+ S F+ V+ FE+Y +++R+LL + L
Sbjct: 95 MEGKLHDPEGMGIIPRIVQDIFNYIYS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNL 153
Query: 58 A----KIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMI 109
+ K R+ ++ E V +P E + +R V+ N SH I +I
Sbjct: 154 SVHEDKNRVPYVKGCTERF---VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLI 210
Query: 110 HIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS 169
++ N T + L KL LVDLAGSE + G + + ++ KSLSALG+V+S+L
Sbjct: 211 NVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAE 270
Query: 170 RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
VPY +S +T++L DSLG + +T +++ P++ N SET S+L F RA++
Sbjct: 271 GSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKT 324
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 140/263 (53%), Gaps = 23/263 (8%)
Query: 3 GSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA---- 58
G S +G+ R ++F+ + F+ V+ +E+Y +++R+LL + L+
Sbjct: 107 GDSVKQGIIPRIVNDIFNHIYA-MEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHED 165
Query: 59 KIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN 114
K R+ ++ + E V +P + +V++ +R V+ N SH + +I++
Sbjct: 166 KNRVPYVKGATERF---VSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQE 222
Query: 115 NLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT-SRKDI 173
NL + L KL LVDLAGSE + G + + ++ KSLSALG+V+S+L K
Sbjct: 223 NLENQKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTH 282
Query: 174 VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST--VLSLGNR 231
+PY +S LT++L +SLG +++T +++ P + N SET S+L+F RA++ V+ +
Sbjct: 283 IPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEE 342
Query: 232 DTIKKWRDIANDARKELYEREKE 254
T ++W K YE+EKE
Sbjct: 343 LTAEEW--------KRRYEKEKE 357
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 29/245 (11%)
Query: 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG------ 54
M G++ GL R LF+ + + F V+ E+YNE++R+LL G
Sbjct: 110 MMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLK 169
Query: 55 -----------NGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVS 103
+GL+K+ + S + IE + + + + + SR + V K ++
Sbjct: 170 VREHSVLGPYVDGLSKLAVTSYKD-IESLMSEGNKSRTVAATNMNEESSRSHAVFKITLT 228
Query: 104 HLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDV 163
H + + + +GE + KLSLVDLAGSE +G+R+ + ++ KSL+ LG V
Sbjct: 229 HTLYDV----KSGTSGEKV-GKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLV 283
Query: 164 LSSLT------SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNF 217
+S+L ++ VPY +S+LT +L DSLG +SKT M+ + P A N ETLS+L +
Sbjct: 284 ISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRY 343
Query: 218 SSRAR 222
+ RA+
Sbjct: 344 ADRAK 348
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 126/238 (52%), Gaps = 22/238 (9%)
Query: 9 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KI 60
G+ +F+ N T + E+YNE + +LL N GL +I
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 61 R--------LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 111
R + +S +L +E V+ L+ + L+S + N+ S + SH I +IH+
Sbjct: 168 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SASHSIFIIHL 225
Query: 112 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--- 168
+N TG + Y L+LVDLAGSE + G+R+ + ++ KSLS LGDV+ +L
Sbjct: 226 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD 285
Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
S K +P+ NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 286 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 126/238 (52%), Gaps = 22/238 (9%)
Query: 9 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KI 60
G+ +F+ N T + E+YNE + +LL N GL +I
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 61 R--------LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 111
R + +S +L +E V+ L+ + L+S + N+ S + SH I +IH+
Sbjct: 168 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHL 225
Query: 112 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--- 168
+N TG + Y L+LVDLAGSE + G+R+ + ++ KSLS LGDV+ +L
Sbjct: 226 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPD 285
Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
S K +P+ NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 286 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 14/222 (6%)
Query: 13 RCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-----PQTGNGLAKIRLQSLES 67
+ F ++ +L + T R F E+YNE + +LL P T + + +
Sbjct: 494 KIFNDIEELKEKGWSYTVRGKF----IEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTT 549
Query: 68 SIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMIHIYYNNLITGENLY 123
+ + +P + +L A + R +K N SH I +I + N +T E+ Y
Sbjct: 550 VTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSY 609
Query: 124 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDI-VPYENSMLT 182
L+L+DLAGSE L G+R+ + + KSLS LGDV+ SL + VPY NS LT
Sbjct: 610 GTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLT 669
Query: 183 KVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 224
+L SLG +SKTLM VNI P +++ET++SL F+++ +T
Sbjct: 670 YLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNT 711
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 126/238 (52%), Gaps = 22/238 (9%)
Query: 9 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KI 60
G+ +F+ N T + E+YNE + +LL N GL +I
Sbjct: 119 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 178
Query: 61 R--------LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 111
R + +S +L +E V+ L+ + L+S + N+ S + SH I +IH+
Sbjct: 179 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHL 236
Query: 112 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--- 168
+N TG + Y L+LVDLAGSE + G+R+ + ++ KSLS LGDV+ +L
Sbjct: 237 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD 296
Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
S K +P+ NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 297 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 354
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 99.4 bits (246), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 126/238 (52%), Gaps = 22/238 (9%)
Query: 9 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KI 60
G+ +F+ N T + E+YNE + +LL N GL +I
Sbjct: 107 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 166
Query: 61 R--------LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 111
R + +S +L +E V+ L+ + L+S + N+ S + SH I +IH+
Sbjct: 167 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHL 224
Query: 112 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--- 168
+N TG + Y L+LVDLAGSE + G+R+ + ++ KSLS LGDV+ +L
Sbjct: 225 SGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD 284
Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
S K +P+ NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 285 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 342
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 129/240 (53%), Gaps = 26/240 (10%)
Query: 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL---------- 50
+ G RG+ F+ +F ++ + ++ + E+Y E++R+LL
Sbjct: 122 IRGDPEKRGVIPNSFDHIF--THISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLEL 179
Query: 51 ---PQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLII 107
P TG + ++ L S + +++++ + +S + N+ S + SH I
Sbjct: 180 KERPDTG-----VYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHS--SRSHAIF 232
Query: 108 MIHIYYNNL-ITGENL--YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVL 164
+I I + + + GEN KL+LVDLAGSE GER+ + + SLSALG+V+
Sbjct: 233 VITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVI 292
Query: 165 SSLTSRKDI-VPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
S+L K +PY +S LT++L DSLG ++KT+M+ N+ P + N+ ETL++L +++RA++
Sbjct: 293 SALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKN 352
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 114/215 (53%), Gaps = 24/215 (11%)
Query: 32 FNFAVTVFELYNEQLRELL----PQTGNG---------------LAKIRLQSLESSIELV 72
+ + E+YNE + +LL P N L + ++ + +
Sbjct: 153 YKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYITNITTCVLDS 212
Query: 73 QEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLA 132
++ VD L+ + L+S + N+ S + SH I +IH+ N TGE L+LVDLA
Sbjct: 213 RDTVDKVLKRANKLRSTASTAANEHS--SRSHSIFIIHLEGKNEGTGEKSQGILNLVDLA 270
Query: 133 GSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS---RKDIVPYENSMLTKVLADSL 189
GSE L + GER+ + + KSLS LGDV+ +L S +K +P+ NS LT +L SL
Sbjct: 271 GSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSKLTYLLQYSL 330
Query: 190 GESSKTLMIVNICPNAANMSETLSSLNFSSRARST 224
SSKTLM VNI P A +++ET++SL F+S+ +T
Sbjct: 331 IGSSKTLMFVNISPAALHLNETINSLRFASKVNNT 365
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 24/232 (10%)
Query: 9 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-----NGLAKIRLQ 63
GL R LF ++ + ++F + E+YNE +R+LL TG G +IR +
Sbjct: 145 GLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLL-ATGTRKGQGGECEIR-R 202
Query: 64 SLESSIEL-----------VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIY 112
+ S EL +++VD L ++ ++ ++ N+ S + SH + + I
Sbjct: 203 AGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERS--SRSHSVFQLQIS 260
Query: 113 YNNLITGENLYSKLSLVDLAGSE----GLIAEDDSGERITDVLHVMKSLSALGDVLSSLT 168
+ G + LSLVDLAGSE GL ER+ + + SLS LG V+ +L+
Sbjct: 261 GEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALS 320
Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR 220
+++ VPY NS LT +L +SLG S+K LM VNI P N+SE+L+SL F+S+
Sbjct: 321 NKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASK 372
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 125/238 (52%), Gaps = 22/238 (9%)
Query: 9 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-------GLA-KI 60
G+ +F+ N T + E+YNE + +LL N GL +I
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 61 R--------LQSLESSIEL-VQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 111
R + +S +L +E V+ L+ + L+S + N+ S + SH I +IH+
Sbjct: 168 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHS--SRSHSIFIIHL 225
Query: 112 YYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT--- 168
+N TG + Y L+LVDLAGS + G+R+ + ++ KSLS LGDV+ +L
Sbjct: 226 SGSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPD 285
Query: 169 SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226
S K +P+ NS LT +L SL SKTLM VNI P++++++ETL+SL F+S+ ST L
Sbjct: 286 STKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 343
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 127/233 (54%), Gaps = 23/233 (9%)
Query: 7 DRGLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL--Q 63
D G+ R LFD L + T R ++ ELYNE+L +LL + + KIR+
Sbjct: 135 DIGIIPRALSHLFDELRMMEVEYTMRISY----LELYNEELCDLL--STDDTTKIRIFDD 188
Query: 64 SLESSIELVQEKVDNPL----EFSKVLKSAFQSRGNDVSKFNV----SHLI--IMIHIYY 113
S + ++Q + P+ + K+L+ + R + N SH + I++HI
Sbjct: 189 STKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRE 248
Query: 114 NNLITGENL--YSKLSLVDLAGSEGLI-AEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
N I GE++ KL+LVDLAGSE + A ++ G R+ + +++ +SL LG V+++L R
Sbjct: 249 NG-IEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDR 307
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
VPY S LT++L +SLG +KT +I I P ++ ETLS+L ++ RA++
Sbjct: 308 APHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKN 360
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 40/260 (15%)
Query: 1 MEGSSHDRGLYARCFEELFD--LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA 58
M G+ GL R E+LF S D T +N V+ FE+YNE +R+LL
Sbjct: 154 MMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKP 213
Query: 59 KIRLQSLESSIE--LVQEKVDNPL----EFSKVLKSAFQSRG------NDVSKFNVSHLI 106
L+ ES E V++ + P+ E + ++ SR ND S + +
Sbjct: 214 PYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFT 273
Query: 107 IMIHIYYNNLITGENL--YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVL 164
IM+ +++L T + S++ LVDLAGSE + + +G+R+ + ++ KSL+ LG V+
Sbjct: 274 IMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVI 333
Query: 165 SSLTSRK----------------------DIVPYENSMLTKVLADSLGESSKTLMIVNIC 202
++L K +VPY +S+LT +L DSLG +SKT MI I
Sbjct: 334 AALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACIS 393
Query: 203 PNAANMSETLSSLNFSSRAR 222
P + ETLS+L ++ +A+
Sbjct: 394 P--TDYDETLSTLRYADQAK 411
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9 GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 134 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 187
Query: 68 S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 248 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 307
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 122/237 (51%), Gaps = 26/237 (10%)
Query: 7 DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLE 66
++G+ R E F L + + + V+ E+Y E+ R+LL + G I+L+ E
Sbjct: 113 EQGIVPRAMAEAFKLIDENDLLDCLVH--VSYLEVYKEEFRDLL-EVGTASRDIQLREDE 169
Query: 67 -SSIELVQEK---VDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLI----- 117
++ L K V+ E +L+ +R + N HL H + +
Sbjct: 170 RGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLN--HLSSRSHTVFTVTLEQRGR 227
Query: 118 ---------TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT 168
G+ L SK VDLAGSE ++ +GER+ + + + SL ALG+V+S+L
Sbjct: 228 APSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALG 287
Query: 169 S---RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
R +PY +S +T++L DSLG ++KT+MI + P++++ ETL++LN++SRA+
Sbjct: 288 DPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9 GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 134 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 187
Query: 68 S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 248 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 307
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9 GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 134 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 187
Query: 68 S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 248 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 307
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9 GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 133 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 186
Query: 68 S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 187 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 246
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 247 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 306
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 307 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 357
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9 GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 136 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 189
Query: 68 S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 190 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 249
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 250 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 309
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 310 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 360
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9 GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 134 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 187
Query: 68 S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 248 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 307
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9 GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 134 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 187
Query: 68 S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 188 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 247
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 248 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 307
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 308 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 358
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9 GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 125 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 178
Query: 68 S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 179 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 238
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 239 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 298
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 299 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 349
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 22/231 (9%)
Query: 9 GLYARCFEELFD-LSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
G+ R ++F+ L+++ T F+ V++ E+YNE+L +LL + + RLQ +
Sbjct: 119 GIIPRTLHQIFEKLTDNGT----EFSVKVSLLEIYNEELFDLLNPSSD--VSERLQMFDD 172
Query: 68 S-------IELVQE-KVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHIYYN- 114
I+ ++E V N E ++L+ R + N SH + + I+
Sbjct: 173 PRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 232
Query: 115 NLITGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
I GE L KL+LVDLAGSE + +R + ++ +SL LG V+++L R
Sbjct: 233 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTP 292
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
VPY S LT++L DSLG ++T +I I P + N+ ETLS+L ++ RA++
Sbjct: 293 HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKN 343
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 120/237 (50%), Gaps = 26/237 (10%)
Query: 7 DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLE 66
++G+ R E F L + + + V+ E+Y E+ R+LL + G I+L+ E
Sbjct: 113 EQGIVPRAMAEAFKLIDENDLLDCLVH--VSYLEVYKEEFRDLL-EVGTASRDIQLREDE 169
Query: 67 -SSIELVQEK---VDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLI----- 117
++ L K V+ E +L+ +R + N HL H + +
Sbjct: 170 RGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLN--HLSSRSHTVFTVTLKQRGR 227
Query: 118 ---------TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT 168
G+ L SK VDLAGSE ++ +GE + + + SL ALG+V+S+L
Sbjct: 228 APSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALG 287
Query: 169 S---RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
R +PY +S +T++L DSLG ++KT+MI + P++++ ETL++LN++SRA+
Sbjct: 288 DPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 26/239 (10%)
Query: 8 RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
+G+ + E+LF N T ++ V+ E+Y E++R+LL G ++R L
Sbjct: 132 QGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLG 191
Query: 68 SI--ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMI------HIYYNN 115
+L + V + + ++ S ++R + N SH + I H N
Sbjct: 192 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 251
Query: 116 LITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT------- 168
+ T + SK+SLVDLAGSE + G R+ + ++ KSL+ LG V+S+L
Sbjct: 252 ITTEK--VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 309
Query: 169 -----SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
+ D +PY +S+LT +L ++LG +S+T M+ + P N ETLS+L ++ RA+
Sbjct: 310 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 368
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 26/239 (10%)
Query: 8 RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
+G+ + E+LF N T ++ V+ E+Y E++R+LL G ++R L
Sbjct: 116 QGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLG 175
Query: 68 SI--ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMI------HIYYNN 115
+L + V + + ++ S ++R + N SH + I H N
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235
Query: 116 LITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT------- 168
+ T + SK+SLVDLAGSE + G R+ + ++ KSL+ LG V+S+L
Sbjct: 236 ITTEK--VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 169 -----SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
+ D +PY +S+LT +L ++LG +S+T M+ + P N ETLS+L ++ RA+
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 118/239 (49%), Gaps = 26/239 (10%)
Query: 8 RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
+G+ + E+LF N T ++ V+ E+Y E++R+LL G ++R L
Sbjct: 116 QGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLG 175
Query: 68 SI--ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMI------HIYYNN 115
+L + V + + ++ S ++R + N SH + I H N
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235
Query: 116 LITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT------- 168
+ T + SK+SLVDLAGSE + G R+ + ++ KSL+ LG V+S+L
Sbjct: 236 ITTEK--VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 169 -----SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
+ D +PY +S+LT +L ++LG +S+T M+ + P N ETLS+L ++ RA+
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 26/239 (10%)
Query: 8 RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLES 67
+G+ + E+LF N T ++ V+ E+Y E++R+LL G ++R L
Sbjct: 116 QGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLG 175
Query: 68 SI--ELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFN----VSHLIIMI------HIYYNN 115
+L + V + + ++ S + R + N SH + I H N
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235
Query: 116 LITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT------- 168
+ T + SK+SLVDLAGSE + G R+ + ++ KSL+ LG V+S+L
Sbjct: 236 ITTEK--VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 293
Query: 169 -----SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
+ D +PY +S+LT +L ++LG +S+T M+ + P N ETLS+L ++ RA+
Sbjct: 294 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 352
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 116/233 (49%), Gaps = 8/233 (3%)
Query: 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTV--FELYNEQLRELL-PQTGNGL 57
M GS G+ R +L L+ + + +VT+ E+Y E++ +LL P +G+ +
Sbjct: 116 MLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLV 175
Query: 58 AKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMIHI-Y 112
+ + L Q+ + + +F + A ++R ++ N SH ++++ +
Sbjct: 176 IREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQ 235
Query: 113 YNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD 172
L KL L+DLAGSE + G R+ + + SL LG V+ +L
Sbjct: 236 RERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLP 295
Query: 173 IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTV 225
VPY +S LT++L DSLG S+ +++I NI P +T+S+LNF++R++ +
Sbjct: 296 RVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVI 348
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 17/242 (7%)
Query: 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
M+G G+ R + LFD + T E+YNE L +LL + +I
Sbjct: 153 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EI 211
Query: 61 RL-QSLESSI---ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIH 110
R+ ++ ++ I + +E V +P ++ +A +R GN+ S + SH + +
Sbjct: 212 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLE 269
Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
+ + E ++LVDLAGSE + R+T+ ++ +SLS L +V+ +L +
Sbjct: 270 LIGRHAEKQEISVGSINLVDLAGSES----PKTSTRMTETKNIKRSLSELTNVILALLQK 325
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN 230
+D +PY NS LT +L SLG +SKTLM +N+ P E++ SL F++ S ++
Sbjct: 326 QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAK 385
Query: 231 RD 232
R+
Sbjct: 386 RN 387
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 103/198 (52%), Gaps = 10/198 (5%)
Query: 35 AVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRG 94
AV+ E+YNEQ+R+LL +G + Q L + + E +L + ++R
Sbjct: 156 AVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRT 215
Query: 95 NDVSKFNV----SHLIIMIHIYYNNLITGENL---YSKLSLVDLAGSEGLIAEDDSGERI 147
+ N SH + I++ + N +K+SL+DLAGSE G R
Sbjct: 216 QHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRF 275
Query: 148 TDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPN 204
+ ++ +SL ALG+V+++L K +PY NS LT++L DSLG + +T+MI + P+
Sbjct: 276 VEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPS 335
Query: 205 AANMSETLSSLNFSSRAR 222
+ +T ++L +++RA+
Sbjct: 336 SVFYDDTYNTLKYANRAK 353
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 17/242 (7%)
Query: 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
M+G G+ R + LFD + T E+YNE L +LL + +I
Sbjct: 164 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EI 222
Query: 61 RL-QSLESSI---ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIH 110
R+ ++ ++ I + +E V +P ++ +A +R GN+ S + SH + +
Sbjct: 223 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLE 280
Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
+ + E ++LVDLAGSE + R+T+ ++ +SLS L +V+ +L +
Sbjct: 281 LIGRHAEKQEISVGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQK 336
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN 230
+D +PY NS LT +L SLG +SKTLM +N+ P E++ SL F++ S ++
Sbjct: 337 QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAK 396
Query: 231 RD 232
R+
Sbjct: 397 RN 398
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 17/242 (7%)
Query: 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
M+G G+ R + LFD + T E+YNE L +LL + +I
Sbjct: 150 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EI 208
Query: 61 RL-QSLESSI---ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIH 110
R+ ++ ++ I + +E V +P ++ +A +R GN+ S + SH + +
Sbjct: 209 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLE 266
Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
+ + E ++LVDLAGSE + R+T+ ++ +SLS L +V+ +L +
Sbjct: 267 LIGRHAEKQEISVGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQK 322
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN 230
+D +PY NS LT +L SLG +SKTLM +N+ P E++ SL F++ S ++
Sbjct: 323 QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAK 382
Query: 231 RD 232
R+
Sbjct: 383 RN 384
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 17/242 (7%)
Query: 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
M+G G+ R + LFD + T E+YNE L +LL + +I
Sbjct: 156 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EI 214
Query: 61 RL-QSLESSI---ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIH 110
R+ ++ ++ I + +E V +P ++ +A +R GN+ S + SH + +
Sbjct: 215 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLE 272
Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
+ + E ++LVDLAGSE + R+T+ ++ +SLS L +V+ +L +
Sbjct: 273 LIGRHAEKQEISVGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQK 328
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN 230
+D +PY NS LT +L SLG +SKTLM +N+ P E++ SL F++ S ++
Sbjct: 329 QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAK 388
Query: 231 RD 232
R+
Sbjct: 389 RN 390
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 118/237 (49%), Gaps = 17/237 (7%)
Query: 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
M+G G+ R + LFD + T E+YNE L +LL + +I
Sbjct: 153 MDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDM-EI 211
Query: 61 RL-QSLESSI---ELVQEKVDNPLEFSKVLKSAFQSR------GNDVSKFNVSHLIIMIH 110
R+ ++ ++ I + +E V +P ++ +A +R GN+ S + SH + +
Sbjct: 212 RMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERS--SRSHAVTKLE 269
Query: 111 IYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
+ + E ++LVDLAGSE + R+T+ ++ +SLS L +V+ +L +
Sbjct: 270 LIGRHAEKQEISVGSINLVDLAGSES----PKTSTRMTETKNINRSLSELTNVILALLQK 325
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS 227
+D +PY NS LT +L SLG +SKTLM +N+ P E++ SL F++ S ++
Sbjct: 326 QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT 382
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 15/228 (6%)
Query: 8 RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL---PQTGNGLAKIRLQS 64
RG+ R +++F + + T V+ E+YNE L +LL P G + + +
Sbjct: 132 RGILPRALQQVFRMI--EERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVE 189
Query: 65 LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV-------SHLIIMIHIYYNNLI 117
+ + V + F+ N + + SH I I++ ++
Sbjct: 190 NPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT 249
Query: 118 TGENLY--SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIV 174
E Y SK++LVDLAGSE L G+ + + ++ KSLS L + +L +K D +
Sbjct: 250 LSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHI 309
Query: 175 PYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
P+ LT L DSLG + +++ NI AA + ETLSSL F+SR +
Sbjct: 310 PFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 23/227 (10%)
Query: 8 RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIR-LQSLE 66
+G+YA ++F L N VT FE+YN +L +LL N AK+R L+ +
Sbjct: 165 KGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL----NKKAKLRVLEDGK 220
Query: 67 SSIELV--QEKVDNPLEFSKVLK-----SAFQSRGNDVSKFNVSHLIIMIHIYYNNLITG 119
+++V QE + N + V+K SA ++ G + N S H + ++
Sbjct: 221 QQVQVVGLQEHLVNSAD--DVIKMIDMGSACRTSGQTFANSNSSR----SHACFQIILRA 274
Query: 120 EN-LYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSSLTSRKDIVPY 176
+ ++ K SLVDLAG+E A+ S +R T + + KSL AL + + +L K P+
Sbjct: 275 KGRMHGKFSLVDLAGNE-RGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPF 333
Query: 177 ENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
S LT+VL DS +GE+S+T MI I P ++ TL++L ++ R +
Sbjct: 334 RESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVK 380
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 116/236 (49%), Gaps = 25/236 (10%)
Query: 1 MEGSSHD--RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA 58
+ G S + +G+YA ++F L N VT FE+YN ++ +LL N A
Sbjct: 176 LSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL----NKKA 231
Query: 59 KIRLQSLESSIELVQ---------EKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMI 109
K+R+ LE S + VQ D+ ++ + SA ++ G + N S
Sbjct: 232 KLRV--LEDSRQQVQVVGLQEYLVTCADDVIKMIN-MGSACRTSGQTFANSNSSRSHACF 288
Query: 110 HIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSSL 167
I L T L+ K SLVDLAG+E A+ S +R T + + KSL AL + + +L
Sbjct: 289 QIL---LRTKGRLHGKFSLVDLAGNE-RGADTSSADRQTRMEGAEINKSLLALKECIRAL 344
Query: 168 TSRKDIVPYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
K P+ S LT+VL DS +GE+S+T MI I P ++ TL++L ++ R +
Sbjct: 345 GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 50/257 (19%)
Query: 8 RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL-------------PQTG 54
RG+ FE +F ++ + ++ + E+Y E++R+LL P+TG
Sbjct: 129 RGVIPNAFEHIF--THISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETG 186
Query: 55 NGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYN 114
+ ++ L S + +++++ + ++ + N+VS + SH I +I + +
Sbjct: 187 -----VYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVS--SRSHAIFIITVECS 239
Query: 115 NLIT-GENL--YSKLSLVDLAGSE--GLIAEDDSG----------------------ERI 147
+ G++ KL+LVDLAGSE + +G ER
Sbjct: 240 ERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERP 299
Query: 148 TDVLHVMKSLSALGDVLSSLT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAA 206
+ + SLSALG+V+++L +R +PY +S LT++L DSLG ++KT+M+ + P +
Sbjct: 300 KEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASH 359
Query: 207 NMSETLSSLNFSSRARS 223
+ E+LS+L F++RA++
Sbjct: 360 SYDESLSTLRFANRAKN 376
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 116/236 (49%), Gaps = 25/236 (10%)
Query: 1 MEGSSHD--RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA 58
+ G S + +G+YA ++F L N VT FE+YN ++ +LL N A
Sbjct: 104 LSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL----NKKA 159
Query: 59 KIRLQSLESSIELVQ---------EKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMI 109
K+R+ LE S + VQ D+ ++ + SA ++ G + N S
Sbjct: 160 KLRV--LEDSRQQVQVVGLQEYLVTCADDVIKMIN-MGSACRTSGQTFANSNSSRSHACF 216
Query: 110 HIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSSL 167
I L T L+ K SLVDLAG+E A+ S +R T + + KSL AL + + +L
Sbjct: 217 QIL---LRTKGRLHGKFSLVDLAGNE-RGADTSSADRQTRMEGAEINKSLLALKECIRAL 272
Query: 168 TSRKDIVPYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
K P+ S LT+VL DS +GE+S+T MI I P ++ TL++L ++ R +
Sbjct: 273 GQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 328
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 31/237 (13%)
Query: 3 GSSHD--RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 60
G + D +G+YA ++F + T FE+Y+ ++ +LL + K
Sbjct: 196 GKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNR------KT 249
Query: 61 RLQSLESSIELVQ------------EKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIM 108
+L+ LE + VQ E V ++ +++ Q+ N S + SH +
Sbjct: 250 KLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHS--SRSHAVFQ 307
Query: 109 IHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDV--LHVMKSLSALGDVLSS 166
I + L+ K SL+DLAG+E A+ S +R T + + KSL AL + + +
Sbjct: 308 IILRRKG-----KLHGKFSLIDLAGNE-RGADTSSADRQTRLEGAEINKSLLALKECIRA 361
Query: 167 LTSRKDIVPYENSMLTKVLADS-LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
L K P+ S LT+VL DS +GE+S+T MI I P A+ TL++L +++R +
Sbjct: 362 LGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVK 418
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 9/191 (4%)
Query: 37 TVFELYNEQLRELLPQTGN-GLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGN 95
+ E+YNE+ +LL T + + R Q Q + + LE + + N
Sbjct: 155 SFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMN 214
Query: 96 DVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMK 155
S + SH I+ IH+ + +S++++VDLAGSEG+ G + +++
Sbjct: 215 --SNSSRSHAIVTIHV------KSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINL 266
Query: 156 SLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 215
L ++ V+ S+ + ++PY +S+LT VL SL S + I P+ ++SETLS+L
Sbjct: 267 GLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTL 326
Query: 216 NFSSRARSTVL 226
F + A++ L
Sbjct: 327 RFGTSAKAAAL 337
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 116/233 (49%), Gaps = 23/233 (9%)
Query: 3 GSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG------NG 56
G S G++ ++F N + F ++ +E+Y +L +LL + NG
Sbjct: 109 GQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIF-ISFYEIYCGKLYDLLQKRKMVAALENG 167
Query: 57 LAKIRLQSLE-----SSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHI 111
++ ++ L+ + EL+ + +D L + K S+ ++ S+ SH I+ I +
Sbjct: 168 KKEVVVKDLKILRVLTKEELILKMIDGVL----LRKIGVNSQNDESSR---SHAILNIDL 220
Query: 112 YYNNLITGENLYSKLSLVDLAGSE-GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR 170
I K++ +DLAGSE G + + TD ++ +SL AL + + ++ S
Sbjct: 221 ---KDINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSD 277
Query: 171 KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223
K+ +P+ +S LTKVL D SK++MI NI P + +TL++L +SSR ++
Sbjct: 278 KNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 9/187 (4%)
Query: 37 TVFELYNEQLRELLPQTGN-GLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGN 95
+ E+YNE+ +LL T + + R Q Q + + LE + + N
Sbjct: 155 SFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMN 214
Query: 96 DVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMK 155
S + SH I+ IH+ + +S++++VDLAGSEG+ G + +++
Sbjct: 215 --SNSSRSHAIVTIHV------KSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINL 266
Query: 156 SLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 215
L ++ V+ S+ + ++PY +S+LT VL SL S + I P+ ++SETLS+L
Sbjct: 267 GLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTL 326
Query: 216 NFSSRAR 222
F + A+
Sbjct: 327 RFGTSAK 333
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 61/101 (60%), Gaps = 4/101 (3%)
Query: 124 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSML 181
S L+LVDLAGSE +G R+ + ++ +SL LG V+ L+ + + Y +S L
Sbjct: 228 SHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKL 287
Query: 182 TKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222
T++L +SLG ++KT +I I P + ETL++L F+S A+
Sbjct: 288 TRILQNSLGGNAKTRIICTITP--VSFDETLTALQFASTAK 326
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 155 KSLSALGDVLSSLT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 213
KSLSALG+V+S+L K VPY +S +T++L DSLG + +T +++ P+ N +ET S
Sbjct: 2 KSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKS 61
Query: 214 SLNFSSRARS 223
+L F RA++
Sbjct: 62 TLMFGQRAKT 71
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 152 HVMKSLSALGDVLSSLT-SRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSE 210
++ KSLSALG+V+S+L K VPY +S +T++L DSL + +T +++ P+ N +E
Sbjct: 3 NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAE 62
Query: 211 TLSSLNFSSRARS 223
T S+L F RA++
Sbjct: 63 TKSTLMFGQRAKT 75
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 15/146 (10%)
Query: 1 MEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 57
MEG HD G+ R ++FD S F+ V+ FE+Y +++R+LL + L
Sbjct: 95 MEGKLHDPQLMGIIPRIAHDIFDHIYS-MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNL 153
Query: 58 A----KIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSKFNV----SHLIIMI 109
A K R+ ++ E V +P E V+ +R V+ N SH I +I
Sbjct: 154 AVHEDKNRVPYVKGCTERF---VSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLI 210
Query: 110 HIYYNNLITGENLYSKLSLVDLAGSE 135
+I N+ T + L KL LVDLAGSE
Sbjct: 211 NIKQENVETEKKLSGKLYLVDLAGSE 236
>pdb|2P2U|A Chain A, Crystal Structure Of Putative Host-Nuclease Inhibitor
Protein Gam From Desulfovibrio Vulgaris
pdb|2P2U|B Chain B, Crystal Structure Of Putative Host-Nuclease Inhibitor
Protein Gam From Desulfovibrio Vulgaris
Length = 171
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 343 IKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEEL 402
I T+ K+ IE+Q NEA+ +++ R++ +S P+ A L DG+ + A K E
Sbjct: 25 IATIDRKVGEIEAQXNEAIDAAKARASQKSAPLLARRKELE---DGVATFATLNKT-EXF 80
Query: 403 KKRDAL 408
K R +L
Sbjct: 81 KDRKSL 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,047,932
Number of Sequences: 62578
Number of extensions: 852858
Number of successful extensions: 2290
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2139
Number of HSP's gapped (non-prelim): 107
length of query: 956
length of database: 14,973,337
effective HSP length: 108
effective length of query: 848
effective length of database: 8,214,913
effective search space: 6966246224
effective search space used: 6966246224
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)