Query 002175
Match_columns 956
No_of_seqs 279 out of 1798
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 18:13:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243 Kinesin-like protein [ 100.0 4.1E-56 9E-61 530.0 36.2 381 4-426 157-558 (1041)
2 KOG0245 Kinesin-like protein [ 100.0 3.9E-55 8.4E-60 513.3 19.0 257 1-273 105-381 (1221)
3 KOG0240 Kinesin (SMY1 subfamil 100.0 8.9E-53 1.9E-57 474.4 33.8 230 1-232 100-339 (607)
4 KOG4280 Kinesin-like protein [ 100.0 1.9E-54 4.2E-59 497.8 18.1 255 1-272 103-368 (574)
5 KOG0247 Kinesin-like protein [ 100.0 4.2E-51 9.1E-56 469.8 23.3 227 1-227 132-439 (809)
6 KOG0242 Kinesin-like protein [ 100.0 4.2E-50 9.1E-55 475.2 21.5 230 1-234 104-341 (675)
7 PLN03188 kinesin-12 family pro 100.0 2.8E-49 6.1E-54 475.5 26.8 255 6-271 198-471 (1320)
8 cd01370 KISc_KIP3_like Kinesin 100.0 2.3E-49 5E-54 437.9 24.1 222 1-224 105-338 (338)
9 cd01373 KISc_KLP2_like Kinesin 100.0 8E-49 1.7E-53 433.4 24.0 223 1-224 92-337 (337)
10 KOG0241 Kinesin-like protein [ 100.0 8.5E-49 1.8E-53 452.1 22.7 303 1-326 111-431 (1714)
11 cd01368 KISc_KIF23_like Kinesi 100.0 2.9E-48 6.3E-53 430.4 23.4 215 1-222 106-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 3E-47 6.5E-52 423.4 25.6 229 1-229 106-354 (356)
13 cd01371 KISc_KIF3 Kinesin moto 100.0 1.1E-46 2.3E-51 415.6 25.2 222 1-224 99-333 (333)
14 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.9E-46 4.1E-51 411.7 25.1 222 1-224 94-325 (325)
15 cd01374 KISc_CENP_E Kinesin mo 100.0 1.8E-46 3.8E-51 411.6 24.1 220 1-224 91-321 (321)
16 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.2E-46 4.9E-51 415.5 24.8 220 6-228 115-347 (352)
17 cd01376 KISc_KID_like Kinesin 100.0 1.8E-46 3.9E-51 411.6 23.5 216 1-222 98-319 (319)
18 cd01367 KISc_KIF2_like Kinesin 100.0 1.5E-46 3.2E-51 412.9 22.5 214 1-222 102-322 (322)
19 cd01366 KISc_C_terminal Kinesi 100.0 4.4E-46 9.6E-51 409.2 25.4 226 1-226 95-328 (329)
20 cd01372 KISc_KIF4 Kinesin moto 100.0 4.8E-46 1E-50 410.7 25.3 224 1-225 91-341 (341)
21 cd01375 KISc_KIF9_like Kinesin 100.0 4.5E-46 9.8E-51 411.0 24.8 220 1-222 98-334 (334)
22 PF00225 Kinesin: Kinesin moto 100.0 2.1E-45 4.5E-50 403.6 24.0 224 1-224 92-335 (335)
23 smart00129 KISc Kinesin motor, 100.0 1.3E-43 2.9E-48 389.9 25.1 227 1-229 97-333 (335)
24 KOG0239 Kinesin (KAR3 subfamil 100.0 1.6E-44 3.5E-49 426.8 16.0 229 1-230 410-646 (670)
25 cd00106 KISc Kinesin motor dom 100.0 3.3E-43 7.1E-48 385.1 25.0 222 1-222 96-328 (328)
26 KOG0244 Kinesin-like protein [ 100.0 1.6E-42 3.5E-47 408.8 14.1 223 6-231 92-324 (913)
27 COG5059 KIP1 Kinesin-like prot 100.0 3.1E-39 6.7E-44 378.5 29.3 230 1-232 107-344 (568)
28 KOG0246 Kinesin-like protein [ 100.0 2.5E-39 5.4E-44 364.7 19.1 217 7-228 321-545 (676)
29 cd01363 Motor_domain Myosin an 100.0 1.9E-31 4.1E-36 272.0 14.0 122 82-203 58-186 (186)
30 KOG0239 Kinesin (KAR3 subfamil 99.9 8E-29 1.7E-33 293.8 -7.1 595 2-732 69-670 (670)
31 KOG1853 LIS1-interacting prote 97.4 0.015 3.4E-07 62.8 20.2 50 390-439 144-196 (333)
32 PRK11637 AmiB activator; Provi 97.2 0.12 2.5E-06 60.4 26.3 9 586-594 378-386 (428)
33 PF09726 Macoilin: Transmembra 96.8 0.037 8E-07 68.3 17.6 116 307-424 461-576 (697)
34 PRK11637 AmiB activator; Provi 96.7 0.23 5.1E-06 57.9 22.8 8 463-470 304-311 (428)
35 PF09726 Macoilin: Transmembra 96.7 0.29 6.3E-06 60.7 24.0 33 400-434 629-661 (697)
36 TIGR02169 SMC_prok_A chromosom 96.5 0.27 5.8E-06 63.1 23.0 33 393-425 462-494 (1164)
37 COG1579 Zn-ribbon protein, pos 96.5 0.35 7.5E-06 52.8 20.3 111 250-362 35-145 (239)
38 TIGR02169 SMC_prok_A chromosom 96.4 0.32 7E-06 62.4 23.1 10 78-87 118-127 (1164)
39 COG4942 Membrane-bound metallo 96.4 1.2 2.7E-05 52.1 25.2 19 453-471 286-304 (420)
40 TIGR02168 SMC_prok_B chromosom 96.3 0.4 8.7E-06 61.3 23.1 10 498-507 977-986 (1179)
41 COG1579 Zn-ribbon protein, pos 96.3 1.1 2.4E-05 48.9 22.9 152 247-425 18-174 (239)
42 KOG0996 Structural maintenance 96.1 0.18 3.9E-06 64.2 17.8 37 390-426 546-589 (1293)
43 TIGR02168 SMC_prok_B chromosom 95.8 1.1 2.3E-05 57.6 23.6 9 628-636 1071-1079(1179)
44 PF07888 CALCOCO1: Calcium bin 95.7 3.1 6.6E-05 50.4 24.9 32 395-426 285-316 (546)
45 PF10481 CENP-F_N: Cenp-F N-te 95.7 3.2 6.9E-05 46.1 22.8 119 243-365 15-133 (307)
46 PHA02562 46 endonuclease subun 95.6 0.8 1.7E-05 54.7 20.1 18 513-530 466-483 (562)
47 COG4372 Uncharacterized protei 95.6 4.2 9E-05 47.1 24.2 29 398-426 250-278 (499)
48 PRK09039 hypothetical protein; 95.6 0.99 2.1E-05 51.7 19.6 17 199-218 13-29 (343)
49 PRK09039 hypothetical protein; 95.5 1.6 3.5E-05 49.9 21.1 16 490-505 234-253 (343)
50 PF14662 CCDC155: Coiled-coil 95.5 2.7 5.9E-05 44.6 20.7 52 306-357 88-139 (193)
51 KOG0250 DNA repair protein RAD 95.4 1.3 2.7E-05 56.7 21.1 61 305-365 364-425 (1074)
52 KOG0980 Actin-binding protein 95.4 2 4.4E-05 53.8 22.3 81 516-600 645-751 (980)
53 PF14662 CCDC155: Coiled-coil 95.3 4.9 0.00011 42.7 23.0 110 251-360 13-128 (193)
54 KOG0250 DNA repair protein RAD 95.2 1.6 3.4E-05 55.9 20.9 56 309-364 333-388 (1074)
55 KOG0971 Microtubule-associated 95.1 1.6 3.5E-05 54.7 20.0 25 253-277 368-392 (1243)
56 KOG0971 Microtubule-associated 95.0 2 4.4E-05 53.8 20.7 15 496-514 599-613 (1243)
57 COG1196 Smc Chromosome segrega 95.0 2.1 4.6E-05 56.2 22.7 20 70-89 542-561 (1163)
58 PF07888 CALCOCO1: Calcium bin 94.8 9 0.0002 46.5 25.1 30 397-426 428-457 (546)
59 PF13851 GAS: Growth-arrest sp 94.8 5.4 0.00012 42.5 21.2 157 233-410 28-199 (201)
60 PF15254 CCDC14: Coiled-coil d 94.8 1.6 3.4E-05 54.1 18.9 64 392-463 521-584 (861)
61 PF05667 DUF812: Protein of un 94.8 1.3 2.8E-05 54.2 18.5 37 390-426 488-524 (594)
62 PF09755 DUF2046: Uncharacteri 94.8 9.4 0.0002 43.3 23.6 102 308-426 101-204 (310)
63 COG1196 Smc Chromosome segrega 94.7 2.5 5.5E-05 55.5 22.1 21 539-559 985-1005(1163)
64 PF09730 BicD: Microtubule-ass 94.7 4.3 9.3E-05 50.7 22.6 119 241-363 22-150 (717)
65 KOG1853 LIS1-interacting prote 94.6 6 0.00013 43.6 20.9 8 489-496 239-246 (333)
66 PF10168 Nup88: Nuclear pore c 94.6 4.1 9E-05 51.0 22.6 85 325-422 630-714 (717)
67 KOG0996 Structural maintenance 94.6 1.9 4.1E-05 55.5 19.5 10 105-114 160-169 (1293)
68 COG4942 Membrane-bound metallo 94.6 5.6 0.00012 46.8 22.1 42 244-285 57-98 (420)
69 KOG0933 Structural maintenance 94.6 2.9 6.3E-05 53.1 20.7 25 71-95 548-572 (1174)
70 PF05667 DUF812: Protein of un 94.5 7 0.00015 48.1 23.9 30 510-548 553-582 (594)
71 PF00038 Filament: Intermediat 94.5 9.7 0.00021 42.3 23.8 31 390-420 259-289 (312)
72 PF13851 GAS: Growth-arrest sp 94.4 8.6 0.00019 41.0 23.1 105 253-358 27-131 (201)
73 KOG0161 Myosin class II heavy 94.3 3.8 8.1E-05 56.0 22.5 17 891-907 1622-1638(1930)
74 KOG0612 Rho-associated, coiled 94.3 3.7 7.9E-05 53.2 21.2 32 393-426 667-698 (1317)
75 KOG2129 Uncharacterized conser 94.3 5.5 0.00012 46.5 20.7 65 340-413 252-316 (552)
76 PRK02224 chromosome segregatio 94.3 3.8 8.3E-05 51.9 21.9 8 31-38 67-74 (880)
77 PF00261 Tropomyosin: Tropomyo 94.2 7.2 0.00016 42.3 20.8 32 393-424 197-228 (237)
78 KOG0161 Myosin class II heavy 93.9 5 0.00011 54.9 22.2 31 332-362 997-1027(1930)
79 COG4372 Uncharacterized protei 93.8 16 0.00035 42.6 23.0 54 155-219 7-66 (499)
80 PRK04863 mukB cell division pr 93.8 4.1 8.8E-05 54.9 21.3 41 388-428 444-484 (1486)
81 PHA02562 46 endonuclease subun 93.8 7.3 0.00016 46.6 21.8 44 319-362 233-276 (562)
82 KOG0977 Nuclear envelope prote 93.7 2.4 5.2E-05 51.3 17.4 15 178-192 65-82 (546)
83 PF07926 TPR_MLP1_2: TPR/MLP1/ 93.7 8 0.00017 38.4 18.8 36 390-425 95-130 (132)
84 KOG0999 Microtubule-associated 93.7 12 0.00026 45.3 22.4 120 239-362 93-222 (772)
85 PRK02224 chromosome segregatio 93.7 7.5 0.00016 49.3 22.9 31 390-420 409-439 (880)
86 PF12718 Tropomyosin_1: Tropom 93.7 6.3 0.00014 39.9 17.9 48 312-359 86-133 (143)
87 KOG0977 Nuclear envelope prote 93.6 7.3 0.00016 47.3 21.1 112 243-354 103-217 (546)
88 PF08317 Spc7: Spc7 kinetochor 93.6 2.8 6.2E-05 47.5 17.0 51 311-361 214-264 (325)
89 KOG0978 E3 ubiquitin ligase in 93.5 7.2 0.00016 48.5 21.1 40 387-426 581-620 (698)
90 KOG4643 Uncharacterized coiled 93.4 5.5 0.00012 50.8 19.9 49 840-892 881-929 (1195)
91 COG3883 Uncharacterized protei 93.3 16 0.00035 40.7 24.9 71 242-312 41-111 (265)
92 KOG1029 Endocytic adaptor prot 93.3 6 0.00013 49.3 19.6 36 391-426 484-519 (1118)
93 PF10174 Cast: RIM-binding pro 93.3 6.5 0.00014 49.7 20.8 36 390-425 504-539 (775)
94 KOG0995 Centromere-associated 93.2 1.7 3.6E-05 52.4 14.8 38 321-358 288-325 (581)
95 COG5185 HEC1 Protein involved 93.2 1.9 4.1E-05 50.8 14.8 114 306-426 302-422 (622)
96 KOG0999 Microtubule-associated 93.2 11 0.00024 45.4 21.1 39 681-724 492-533 (772)
97 PRK03918 chromosome segregatio 93.1 11 0.00024 47.7 23.0 10 914-923 864-873 (880)
98 PF04849 HAP1_N: HAP1 N-termin 93.0 8.6 0.00019 43.6 19.3 24 397-420 280-303 (306)
99 KOG4673 Transcription factor T 93.0 14 0.00031 45.6 21.9 38 493-530 839-877 (961)
100 PF08317 Spc7: Spc7 kinetochor 93.0 3.8 8.2E-05 46.5 16.8 72 292-363 188-259 (325)
101 KOG0933 Structural maintenance 92.9 10 0.00022 48.6 21.2 71 332-419 820-890 (1174)
102 PF04849 HAP1_N: HAP1 N-termin 92.8 6.6 0.00014 44.5 18.0 24 247-270 168-191 (306)
103 PF06785 UPF0242: Uncharacteri 92.8 8.2 0.00018 44.0 18.5 120 244-363 90-223 (401)
104 PF15070 GOLGA2L5: Putative go 92.8 8.5 0.00018 47.6 20.4 51 312-362 166-216 (617)
105 PF10174 Cast: RIM-binding pro 92.7 17 0.00036 46.2 23.1 30 397-426 462-491 (775)
106 PF10168 Nup88: Nuclear pore c 92.6 3.3 7.1E-05 51.9 17.0 25 390-414 689-713 (717)
107 KOG0980 Actin-binding protein 92.6 8 0.00017 48.8 19.7 52 312-363 465-516 (980)
108 PF15619 Lebercilin: Ciliary p 92.6 16 0.00036 38.8 23.4 26 401-426 165-190 (194)
109 PF06785 UPF0242: Uncharacteri 92.6 16 0.00035 41.8 20.3 33 392-424 193-225 (401)
110 TIGR00606 rad50 rad50. This fa 92.6 9.1 0.0002 51.2 21.9 28 539-566 1135-1162(1311)
111 TIGR00606 rad50 rad50. This fa 92.5 5.4 0.00012 53.2 19.7 30 880-909 1222-1251(1311)
112 PF09738 DUF2051: Double stran 92.5 8.9 0.00019 43.5 18.6 28 255-282 79-106 (302)
113 PF12718 Tropomyosin_1: Tropom 92.4 14 0.00029 37.6 18.2 45 315-359 96-140 (143)
114 KOG0963 Transcription factor/C 92.4 28 0.00062 42.8 23.5 32 657-688 569-600 (629)
115 PRK03918 chromosome segregatio 92.4 27 0.00059 44.3 25.0 30 881-910 812-841 (880)
116 PRK10929 putative mechanosensi 92.4 12 0.00025 49.3 21.8 44 695-738 598-647 (1109)
117 KOG0946 ER-Golgi vesicle-tethe 92.3 22 0.00047 44.9 22.6 32 335-366 800-831 (970)
118 PF07058 Myosin_HC-like: Myosi 92.3 22 0.00048 40.3 20.8 72 334-409 59-131 (351)
119 KOG0976 Rho/Rac1-interacting s 92.2 8.4 0.00018 48.1 18.8 11 698-708 688-698 (1265)
120 PF05483 SCP-1: Synaptonemal c 92.2 24 0.00052 43.8 22.5 41 246-286 527-567 (786)
121 PF09728 Taxilin: Myosin-like 92.1 18 0.00039 41.1 20.6 43 241-283 116-158 (309)
122 PF09755 DUF2046: Uncharacteri 92.1 20 0.00043 40.8 20.5 54 250-303 24-77 (310)
123 KOG2991 Splicing regulator [RN 91.9 14 0.0003 41.0 18.3 39 388-426 273-311 (330)
124 PF12325 TMF_TATA_bd: TATA ele 91.9 6.9 0.00015 38.8 14.8 95 250-359 20-114 (120)
125 smart00787 Spc7 Spc7 kinetocho 91.7 15 0.00033 41.8 19.5 55 309-363 207-261 (312)
126 PF00261 Tropomyosin: Tropomyo 91.7 16 0.00034 39.8 18.9 13 253-265 36-48 (237)
127 KOG4674 Uncharacterized conser 91.7 25 0.00054 48.1 23.8 102 303-420 1240-1341(1822)
128 KOG4643 Uncharacterized coiled 91.5 26 0.00056 45.2 22.3 29 724-752 897-934 (1195)
129 PF15070 GOLGA2L5: Putative go 91.4 32 0.00069 42.8 23.1 23 404-426 199-221 (617)
130 KOG0963 Transcription factor/C 91.4 23 0.0005 43.5 21.3 150 251-426 119-268 (629)
131 KOG1850 Myosin-like coiled-coi 91.4 28 0.0006 39.8 20.3 37 243-279 120-156 (391)
132 PRK11281 hypothetical protein; 91.1 13 0.00028 49.0 20.2 29 391-419 283-311 (1113)
133 PRK04863 mukB cell division pr 91.0 6.1 0.00013 53.3 17.7 34 391-424 440-473 (1486)
134 smart00787 Spc7 Spc7 kinetocho 91.0 16 0.00034 41.7 18.7 44 314-357 219-262 (312)
135 KOG0976 Rho/Rac1-interacting s 91.0 16 0.00035 45.9 19.4 11 122-132 22-32 (1265)
136 KOG0804 Cytoplasmic Zn-finger 90.9 9.6 0.00021 45.1 17.0 14 174-187 209-222 (493)
137 KOG4809 Rab6 GTPase-interactin 90.9 28 0.00061 42.2 20.9 76 246-321 331-406 (654)
138 KOG0994 Extracellular matrix g 90.7 24 0.00053 46.0 21.0 29 398-426 1722-1750(1758)
139 PF15619 Lebercilin: Ciliary p 90.7 26 0.00057 37.4 20.1 52 304-355 59-110 (194)
140 KOG0982 Centrosomal protein Nu 90.6 27 0.00058 41.3 19.9 30 397-426 364-393 (502)
141 KOG0964 Structural maintenance 90.5 36 0.00077 43.9 22.2 37 390-426 464-500 (1200)
142 PF09789 DUF2353: Uncharacteri 90.5 38 0.00082 38.9 23.8 156 250-429 76-232 (319)
143 PRK04778 septation ring format 90.4 22 0.00047 43.5 20.5 27 539-566 516-542 (569)
144 KOG0804 Cytoplasmic Zn-finger 90.4 14 0.00031 43.7 17.7 27 334-360 421-447 (493)
145 KOG0978 E3 ubiquitin ligase in 90.2 30 0.00066 43.3 21.2 18 150-167 260-277 (698)
146 PF14915 CCDC144C: CCDC144C pr 90.0 19 0.00041 40.7 17.7 165 252-426 5-177 (305)
147 KOG1029 Endocytic adaptor prot 90.0 33 0.00071 43.2 20.8 37 390-426 473-509 (1118)
148 KOG4360 Uncharacterized coiled 89.8 28 0.00061 41.9 19.6 28 332-359 238-265 (596)
149 KOG4673 Transcription factor T 89.7 17 0.00036 45.1 18.0 58 783-857 901-959 (961)
150 KOG0612 Rho-associated, coiled 89.6 33 0.00072 45.1 21.4 19 720-738 1093-1111(1317)
151 PF04156 IncA: IncA protein; 89.0 20 0.00043 37.2 16.3 15 254-268 89-103 (191)
152 PF11559 ADIP: Afadin- and alp 88.9 28 0.0006 35.1 17.0 23 252-274 58-80 (151)
153 KOG4674 Uncharacterized conser 88.7 28 0.0006 47.7 20.7 75 254-328 1223-1300(1822)
154 COG5185 HEC1 Protein involved 88.6 57 0.0012 39.1 20.7 30 397-426 484-513 (622)
155 PF05483 SCP-1: Synaptonemal c 88.3 79 0.0017 39.6 22.4 33 325-357 592-624 (786)
156 KOG0288 WD40 repeat protein Ti 88.2 39 0.00084 39.9 19.0 18 503-520 225-242 (459)
157 PRK04778 septation ring format 88.2 26 0.00057 42.8 19.0 17 343-359 350-366 (569)
158 PF05010 TACC: Transforming ac 88.1 42 0.00092 36.3 21.6 29 393-421 168-196 (207)
159 KOG0995 Centromere-associated 87.6 79 0.0017 38.8 22.8 26 314-339 340-365 (581)
160 PF12128 DUF3584: Protein of u 87.5 47 0.001 44.3 21.9 31 894-924 1071-1108(1201)
161 PF04156 IncA: IncA protein; 87.5 36 0.00079 35.2 17.1 22 250-271 92-113 (191)
162 KOG0018 Structural maintenance 87.2 21 0.00045 46.2 17.4 38 389-426 398-435 (1141)
163 KOG0964 Structural maintenance 87.1 37 0.00081 43.8 19.2 72 842-920 855-926 (1200)
164 KOG0994 Extracellular matrix g 86.8 71 0.0015 42.1 21.4 7 185-191 1480-1486(1758)
165 PF12128 DUF3584: Protein of u 86.7 83 0.0018 42.1 23.5 35 392-426 770-804 (1201)
166 KOG0946 ER-Golgi vesicle-tethe 86.7 35 0.00076 43.2 18.5 33 329-361 801-833 (970)
167 PRK10884 SH3 domain-containing 86.5 8.2 0.00018 41.5 11.9 26 250-275 90-115 (206)
168 TIGR01005 eps_transp_fam exopo 86.5 33 0.00071 43.2 19.0 33 521-564 429-461 (754)
169 PF15066 CAGE1: Cancer-associa 86.3 24 0.00052 42.0 16.2 21 252-272 330-350 (527)
170 PF08614 ATG16: Autophagy prot 86.2 5.3 0.00011 42.1 10.2 40 318-357 121-160 (194)
171 PRK01156 chromosome segregatio 86.0 90 0.002 40.1 22.8 31 332-362 414-444 (895)
172 KOG4360 Uncharacterized coiled 85.9 39 0.00085 40.8 17.7 15 150-164 81-95 (596)
173 PF00038 Filament: Intermediat 85.6 65 0.0014 35.9 19.5 48 311-358 253-300 (312)
174 PF05701 WEMBL: Weak chloropla 85.3 60 0.0013 39.5 19.7 38 389-426 368-405 (522)
175 PF10146 zf-C4H2: Zinc finger- 85.2 30 0.00065 37.9 15.5 57 307-363 47-103 (230)
176 KOG0018 Structural maintenance 85.1 38 0.00082 44.0 18.2 41 245-285 309-349 (1141)
177 PF13863 DUF4200: Domain of un 85.0 38 0.00083 32.7 16.4 56 305-360 52-107 (126)
178 PF10498 IFT57: Intra-flagella 85.0 50 0.0011 38.5 18.0 26 314-339 295-320 (359)
179 PF00769 ERM: Ezrin/radixin/mo 85.0 67 0.0014 35.4 18.7 115 249-363 8-125 (246)
180 KOG2129 Uncharacterized conser 84.8 92 0.002 36.9 22.4 19 284-302 204-222 (552)
181 TIGR03007 pepcterm_ChnLen poly 84.8 54 0.0012 39.0 18.9 42 321-362 255-296 (498)
182 PF10267 Tmemb_cc2: Predicted 84.7 32 0.00069 40.6 16.3 57 298-354 261-318 (395)
183 KOG2991 Splicing regulator [RN 84.2 47 0.001 37.0 16.2 64 303-366 240-303 (330)
184 PF15294 Leu_zip: Leucine zipp 84.2 39 0.00085 38.1 16.1 99 250-358 129-232 (278)
185 PF07926 TPR_MLP1_2: TPR/MLP1/ 84.2 47 0.001 33.0 19.2 27 332-358 103-129 (132)
186 PRK11281 hypothetical protein; 84.1 29 0.00063 45.8 17.3 15 792-806 745-759 (1113)
187 PRK10884 SH3 domain-containing 84.0 15 0.00032 39.6 12.4 29 244-272 91-119 (206)
188 TIGR01843 type_I_hlyD type I s 84.0 71 0.0015 36.5 18.8 30 397-426 243-272 (423)
189 PRK01156 chromosome segregatio 84.0 73 0.0016 40.9 20.7 21 340-360 642-662 (895)
190 PF10186 Atg14: UV radiation r 83.9 71 0.0015 34.9 18.7 25 248-272 22-46 (302)
191 PF10186 Atg14: UV radiation r 83.7 72 0.0016 34.8 18.4 17 739-755 276-292 (302)
192 PF15397 DUF4618: Domain of un 83.6 81 0.0018 35.3 19.8 34 331-364 190-223 (258)
193 KOG4807 F-actin binding protei 83.1 1E+02 0.0023 36.2 20.7 75 332-426 510-584 (593)
194 PF00769 ERM: Ezrin/radixin/mo 82.8 51 0.0011 36.3 16.2 29 398-426 101-129 (246)
195 KOG4593 Mitotic checkpoint pro 82.7 88 0.0019 39.2 19.3 46 865-914 599-645 (716)
196 TIGR02680 conserved hypothetic 82.6 1E+02 0.0023 41.8 21.9 30 397-426 365-394 (1353)
197 TIGR03007 pepcterm_ChnLen poly 82.5 1.1E+02 0.0025 36.3 26.6 28 398-425 353-380 (498)
198 COG1340 Uncharacterized archae 82.4 97 0.0021 35.3 22.5 45 318-362 163-207 (294)
199 PF08614 ATG16: Autophagy prot 82.2 15 0.00032 38.8 11.4 49 310-358 134-182 (194)
200 KOG4593 Mitotic checkpoint pro 81.8 1.5E+02 0.0033 37.3 22.7 37 390-426 279-318 (716)
201 PF05911 DUF869: Plant protein 81.6 89 0.0019 39.9 19.5 18 409-426 192-209 (769)
202 TIGR03017 EpsF chain length de 81.3 58 0.0013 38.0 17.0 27 250-276 175-201 (444)
203 PF11932 DUF3450: Protein of u 80.8 59 0.0013 35.5 15.8 20 478-497 183-203 (251)
204 TIGR03319 YmdA_YtgF conserved 80.7 1.2E+02 0.0026 37.1 19.7 28 537-564 276-303 (514)
205 PF13870 DUF4201: Domain of un 80.5 75 0.0016 32.9 22.3 114 250-363 10-127 (177)
206 PF06818 Fez1: Fez1; InterPro 80.3 66 0.0014 34.8 15.4 20 340-359 86-105 (202)
207 PF09789 DUF2353: Uncharacteri 80.3 1.2E+02 0.0026 35.0 24.6 148 278-425 130-311 (319)
208 PF15254 CCDC14: Coiled-coil d 80.3 1.4E+02 0.0031 37.9 20.0 46 318-363 513-558 (861)
209 PF10146 zf-C4H2: Zinc finger- 80.3 69 0.0015 35.2 15.9 60 297-356 44-103 (230)
210 PF04111 APG6: Autophagy prote 80.2 29 0.00063 39.5 13.6 39 326-364 98-136 (314)
211 TIGR03185 DNA_S_dndD DNA sulfu 80.2 59 0.0013 40.4 17.3 18 409-426 504-521 (650)
212 PRK12704 phosphodiesterase; Pr 80.0 1.2E+02 0.0025 37.2 19.3 32 531-564 278-309 (520)
213 PF04012 PspA_IM30: PspA/IM30 79.9 88 0.0019 33.3 21.9 94 310-416 95-188 (221)
214 KOG4809 Rab6 GTPase-interactin 79.8 39 0.00084 41.1 14.6 38 389-426 369-406 (654)
215 PF05701 WEMBL: Weak chloropla 79.5 1.6E+02 0.0034 36.0 22.9 28 399-426 413-440 (522)
216 KOG4807 F-actin binding protei 79.3 1.4E+02 0.003 35.2 20.3 74 282-355 397-470 (593)
217 KOG0979 Structural maintenance 78.9 1.5E+02 0.0033 38.8 20.0 25 775-799 646-670 (1072)
218 TIGR03185 DNA_S_dndD DNA sulfu 78.9 1.8E+02 0.0039 36.3 22.1 23 341-363 391-413 (650)
219 PRK00106 hypothetical protein; 78.9 1.5E+02 0.0032 36.5 19.6 53 502-565 270-325 (535)
220 PF06160 EzrA: Septation ring 78.9 1.7E+02 0.0036 36.1 20.3 22 251-272 250-271 (560)
221 TIGR01843 type_I_hlyD type I s 78.7 1.3E+02 0.0028 34.5 22.9 18 408-425 247-264 (423)
222 COG2433 Uncharacterized conser 78.7 73 0.0016 39.4 16.6 45 313-357 422-466 (652)
223 PF10481 CENP-F_N: Cenp-F N-te 78.5 39 0.00086 37.9 13.3 32 536-567 200-237 (307)
224 PF15066 CAGE1: Cancer-associa 78.3 1.6E+02 0.0035 35.5 21.6 12 34-45 95-106 (527)
225 KOG0244 Kinesin-like protein [ 78.1 53 0.0012 42.2 15.9 36 536-571 693-728 (913)
226 PF10234 Cluap1: Clusterin-ass 77.9 1.2E+02 0.0026 34.1 17.1 23 338-360 194-216 (267)
227 KOG2751 Beclin-like protein [S 77.9 1.3E+02 0.0029 35.8 17.9 61 304-364 209-269 (447)
228 COG2433 Uncharacterized conser 77.7 38 0.00082 41.7 13.9 26 200-225 335-365 (652)
229 PF06160 EzrA: Septation ring 77.5 1.9E+02 0.004 35.7 20.4 43 842-884 448-491 (560)
230 PF09730 BicD: Microtubule-ass 77.4 2.2E+02 0.0047 36.4 24.5 76 786-878 590-681 (717)
231 PF14992 TMCO5: TMCO5 family 77.4 34 0.00074 38.5 12.7 37 546-582 231-269 (280)
232 PF12325 TMF_TATA_bd: TATA ele 77.1 82 0.0018 31.4 15.5 47 240-286 17-63 (120)
233 TIGR02680 conserved hypothetic 77.1 2E+02 0.0042 39.3 21.8 13 541-553 483-495 (1353)
234 PF03915 AIP3: Actin interacti 76.7 55 0.0012 39.0 14.9 107 252-358 150-270 (424)
235 PF04111 APG6: Autophagy prote 76.5 47 0.001 37.9 13.9 44 319-362 84-127 (314)
236 TIGR01000 bacteriocin_acc bact 76.2 1.7E+02 0.0038 34.7 21.8 30 397-426 288-317 (457)
237 PRK10929 putative mechanosensi 76.1 1.7E+02 0.0038 39.0 20.3 28 291-318 105-132 (1109)
238 KOG1937 Uncharacterized conser 76.1 1.9E+02 0.004 34.9 18.6 35 392-426 344-378 (521)
239 PF15358 TSKS: Testis-specific 75.9 77 0.0017 37.5 15.1 52 411-462 218-275 (558)
240 PF09787 Golgin_A5: Golgin sub 75.4 2E+02 0.0043 35.0 19.8 34 390-423 389-422 (511)
241 PF10498 IFT57: Intra-flagella 75.3 1.6E+02 0.0034 34.5 17.8 38 329-366 282-319 (359)
242 TIGR01005 eps_transp_fam exopo 74.6 2.4E+02 0.0053 35.6 20.8 23 250-272 198-220 (754)
243 PF10211 Ax_dynein_light: Axon 74.6 1.2E+02 0.0027 32.1 18.5 21 194-214 18-38 (189)
244 KOG4302 Microtubule-associated 74.6 1.3E+02 0.0028 37.8 17.7 36 389-424 229-264 (660)
245 PF08172 CASP_C: CASP C termin 73.9 68 0.0015 35.6 13.8 41 390-430 97-137 (248)
246 KOG0249 LAR-interacting protei 73.6 62 0.0013 40.6 14.4 15 732-746 677-691 (916)
247 PF05911 DUF869: Plant protein 73.4 1.3E+02 0.0029 38.4 17.8 36 391-426 678-713 (769)
248 KOG0982 Centrosomal protein Nu 73.3 2E+02 0.0043 34.5 17.6 53 314-366 340-392 (502)
249 PF10473 CENP-F_leu_zip: Leuci 73.3 1.1E+02 0.0025 31.2 20.5 46 312-357 65-110 (140)
250 PRK10361 DNA recombination pro 72.4 2.3E+02 0.0051 34.4 24.0 28 397-424 169-196 (475)
251 PF15290 Syntaphilin: Golgi-lo 72.3 74 0.0016 35.9 13.4 45 319-363 123-167 (305)
252 KOG0243 Kinesin-like protein [ 72.2 2.1E+02 0.0046 37.7 19.2 17 541-557 628-644 (1041)
253 PF10212 TTKRSYEDQ: Predicted 72.1 86 0.0019 38.2 15.0 31 257-287 417-447 (518)
254 KOG0979 Structural maintenance 71.9 1.5E+02 0.0033 38.7 17.6 23 404-426 336-358 (1072)
255 PF07795 DUF1635: Protein of u 71.8 62 0.0014 35.2 12.5 20 517-536 115-145 (214)
256 PF07889 DUF1664: Protein of u 71.6 91 0.002 31.4 12.8 39 315-353 84-122 (126)
257 COG5059 KIP1 Kinesin-like prot 71.3 0.83 1.8E-05 55.6 -1.6 65 100-168 502-566 (568)
258 PF10212 TTKRSYEDQ: Predicted 71.2 2.6E+02 0.0055 34.4 26.4 31 390-420 484-514 (518)
259 PF14915 CCDC144C: CCDC144C pr 71.0 2E+02 0.0043 33.0 20.2 41 245-285 55-95 (305)
260 PF12240 Angiomotin_C: Angiomo 71.0 1.6E+02 0.0035 31.9 15.5 26 332-357 62-87 (205)
261 KOG4572 Predicted DNA-binding 70.6 2.4E+02 0.0053 36.2 18.3 36 391-426 1076-1111(1424)
262 COG4026 Uncharacterized protei 70.5 43 0.00093 36.7 10.9 44 506-549 226-271 (290)
263 PF09738 DUF2051: Double stran 70.4 1.3E+02 0.0028 34.4 15.3 31 401-431 220-250 (302)
264 PF03148 Tektin: Tektin family 70.2 2.2E+02 0.0049 33.3 19.0 43 384-426 322-364 (384)
265 PF02841 GBP_C: Guanylate-bind 69.8 1.9E+02 0.0042 32.4 17.4 10 174-183 26-35 (297)
266 PF08172 CASP_C: CASP C termin 69.8 32 0.00069 38.1 10.2 52 307-358 80-131 (248)
267 PHA01754 hypothetical protein 69.8 7.9 0.00017 34.1 4.3 49 756-813 12-60 (69)
268 TIGR01010 BexC_CtrB_KpsE polys 69.5 2.1E+02 0.0046 32.7 17.4 13 155-167 74-86 (362)
269 PF05557 MAD: Mitotic checkpoi 69.3 15 0.00032 46.1 8.5 22 405-426 564-585 (722)
270 PF01920 Prefoldin_2: Prefoldi 69.3 69 0.0015 29.7 11.1 94 331-426 9-102 (106)
271 PRK09343 prefoldin subunit bet 68.2 79 0.0017 31.2 11.6 105 319-426 6-111 (121)
272 PRK09841 cryptic autophosphory 67.6 2.9E+02 0.0064 35.0 19.2 28 248-275 269-296 (726)
273 PF15397 DUF4618: Domain of un 67.4 2.2E+02 0.0047 32.0 20.1 28 248-275 8-35 (258)
274 KOG4787 Uncharacterized conser 67.0 2E+02 0.0044 35.6 16.3 103 314-426 438-548 (852)
275 PF11559 ADIP: Afadin- and alp 66.9 1.5E+02 0.0032 29.9 16.8 32 245-276 58-89 (151)
276 PF05622 HOOK: HOOK protein; 66.7 1.9 4E-05 53.8 0.0 34 388-421 379-412 (713)
277 KOG1937 Uncharacterized conser 66.5 2.9E+02 0.0063 33.4 17.2 30 394-423 397-426 (521)
278 KOG1899 LAR transmembrane tyro 66.5 2.8E+02 0.0062 34.7 17.5 17 202-218 103-119 (861)
279 PF07111 HCR: Alpha helical co 66.0 3.2E+02 0.007 34.7 18.2 57 304-360 153-209 (739)
280 TIGR03319 YmdA_YtgF conserved 66.0 1.8E+02 0.004 35.5 16.4 17 445-461 214-230 (514)
281 PF05384 DegS: Sensor protein 65.7 1.8E+02 0.0038 30.4 19.3 53 305-357 76-128 (159)
282 PF05266 DUF724: Protein of un 65.7 1.9E+02 0.0042 30.9 16.7 43 316-358 141-183 (190)
283 PF13514 AAA_27: AAA domain 65.6 3E+02 0.0066 36.6 19.5 35 392-426 895-929 (1111)
284 PF02841 GBP_C: Guanylate-bind 65.5 2.2E+02 0.0049 31.9 16.0 14 346-359 282-295 (297)
285 COG0419 SbcC ATPase involved i 65.1 4.2E+02 0.009 34.5 22.4 24 401-424 418-441 (908)
286 KOG1899 LAR transmembrane tyro 64.8 1.1E+02 0.0024 38.1 13.7 13 639-651 489-501 (861)
287 KOG4302 Microtubule-associated 64.3 3.1E+02 0.0066 34.7 17.9 36 237-272 108-143 (660)
288 COG4026 Uncharacterized protei 64.3 46 0.00099 36.5 9.6 42 316-357 138-179 (290)
289 TIGR00634 recN DNA repair prot 63.5 1.5E+02 0.0033 36.3 15.2 19 515-533 440-458 (563)
290 COG1842 PspA Phage shock prote 63.1 2.4E+02 0.0052 31.0 21.4 48 311-358 97-144 (225)
291 PRK04406 hypothetical protein; 62.3 60 0.0013 29.7 8.7 33 395-427 27-59 (75)
292 KOG1003 Actin filament-coating 62.3 2.3E+02 0.0051 30.7 18.4 18 252-269 10-27 (205)
293 KOG4677 Golgi integral membran 62.1 1.3E+02 0.0029 36.0 13.5 37 390-426 428-464 (554)
294 KOG4460 Nuclear pore complex, 62.0 3.9E+02 0.0085 33.1 19.6 32 328-359 656-687 (741)
295 PRK12704 phosphodiesterase; Pr 61.7 2.7E+02 0.0059 34.1 16.8 37 444-481 219-255 (520)
296 KOG1962 B-cell receptor-associ 61.5 1.3E+02 0.0028 32.9 12.5 47 311-357 163-209 (216)
297 KOG1962 B-cell receptor-associ 61.4 66 0.0014 35.1 10.3 26 401-426 187-212 (216)
298 PF15035 Rootletin: Ciliary ro 61.2 2E+02 0.0043 30.6 13.6 48 312-359 80-127 (182)
299 KOG2751 Beclin-like protein [S 61.1 3.3E+02 0.0072 32.7 16.4 10 173-182 83-92 (447)
300 KOG0962 DNA repair protein RAD 61.0 3.6E+02 0.0078 36.6 18.3 20 677-707 1185-1204(1294)
301 KOG0992 Uncharacterized conser 60.9 3.9E+02 0.0085 32.8 17.8 35 394-428 390-424 (613)
302 PF06008 Laminin_I: Laminin Do 60.9 2.6E+02 0.0057 30.8 20.5 53 246-298 45-97 (264)
303 PRK13729 conjugal transfer pil 60.8 34 0.00073 41.2 8.7 45 314-358 77-121 (475)
304 PRK00106 hypothetical protein; 60.7 4.1E+02 0.0088 32.9 18.4 39 445-484 235-273 (535)
305 PF05622 HOOK: HOOK protein; 60.5 1.9 4.1E-05 53.8 -1.5 18 202-219 125-142 (713)
306 PRK09841 cryptic autophosphory 60.0 3.1E+02 0.0068 34.7 17.5 24 252-275 266-289 (726)
307 PF05010 TACC: Transforming ac 60.0 2.6E+02 0.0056 30.4 21.5 36 390-425 151-186 (207)
308 PRK00409 recombination and DNA 59.8 3.1E+02 0.0067 35.3 17.5 38 686-723 737-775 (782)
309 PF08826 DMPK_coil: DMPK coile 59.8 1.3E+02 0.0028 26.8 10.0 40 321-360 19-58 (61)
310 COG3096 MukB Uncharacterized p 59.5 2.4E+02 0.0051 36.1 15.3 29 788-816 986-1014(1480)
311 PF10473 CENP-F_leu_zip: Leuci 59.1 2.2E+02 0.0047 29.2 18.6 20 317-336 91-110 (140)
312 PLN03188 kinesin-12 family pro 59.1 6.2E+02 0.013 34.5 21.6 65 295-359 1117-1191(1320)
313 PF03148 Tektin: Tektin family 58.9 2.6E+02 0.0057 32.7 15.5 116 311-426 41-163 (384)
314 PF07058 Myosin_HC-like: Myosi 58.9 3.4E+02 0.0073 31.4 18.2 28 331-358 63-90 (351)
315 PRK10869 recombination and rep 58.4 1.5E+02 0.0031 36.5 13.8 18 515-532 430-447 (553)
316 COG4209 LplB ABC-type polysacc 58.3 3.5 7.5E-05 46.1 0.2 25 498-524 189-213 (309)
317 PF13870 DUF4201: Domain of un 58.0 2.3E+02 0.0051 29.3 18.9 87 318-423 89-175 (177)
318 PF13094 CENP-Q: CENP-Q, a CEN 57.9 2.2E+02 0.0048 29.0 13.5 50 313-362 41-90 (160)
319 KOG1003 Actin filament-coating 57.7 2.8E+02 0.0061 30.1 21.5 32 394-425 166-197 (205)
320 PF09787 Golgin_A5: Golgin sub 57.6 4.3E+02 0.0093 32.2 19.6 36 391-426 279-314 (511)
321 TIGR03017 EpsF chain length de 57.4 3.7E+02 0.0081 31.4 24.5 17 153-169 75-91 (444)
322 PF15290 Syntaphilin: Golgi-lo 57.3 2.7E+02 0.0058 31.7 14.2 17 312-328 123-139 (305)
323 TIGR02338 gimC_beta prefoldin, 57.2 1.6E+02 0.0035 28.3 11.4 38 389-426 70-107 (110)
324 COG0419 SbcC ATPase involved i 57.2 5.6E+02 0.012 33.4 23.0 10 102-112 70-79 (908)
325 PF03962 Mnd1: Mnd1 family; I 57.0 2.7E+02 0.0058 29.6 14.4 25 248-272 71-95 (188)
326 TIGR02338 gimC_beta prefoldin, 56.9 1.9E+02 0.0041 27.9 13.5 28 333-360 80-107 (110)
327 COG1382 GimC Prefoldin, chaper 56.4 95 0.0021 31.0 9.6 86 339-426 25-110 (119)
328 COG4477 EzrA Negative regulato 56.3 4.8E+02 0.01 32.3 19.3 23 404-426 414-436 (570)
329 KOG2264 Exostosin EXT1L [Signa 56.0 69 0.0015 39.2 10.1 51 315-365 102-152 (907)
330 PF07798 DUF1640: Protein of u 56.0 2.6E+02 0.0056 29.2 18.1 11 213-223 3-13 (177)
331 PRK10361 DNA recombination pro 55.8 4.6E+02 0.01 32.0 23.6 19 582-601 306-324 (475)
332 COG4477 EzrA Negative regulato 55.6 2.7E+02 0.0058 34.3 14.8 24 343-366 349-372 (570)
333 PF13514 AAA_27: AAA domain 55.5 6.5E+02 0.014 33.6 24.6 38 389-426 349-386 (1111)
334 PRK11519 tyrosine kinase; Prov 55.4 5.4E+02 0.012 32.7 21.7 23 193-215 227-249 (719)
335 PF05769 DUF837: Protein of un 54.7 2.9E+02 0.0063 29.3 14.6 22 403-424 156-177 (181)
336 TIGR03752 conj_TIGR03752 integ 54.5 1.6E+02 0.0034 35.7 12.8 29 398-426 114-142 (472)
337 PF05769 DUF837: Protein of un 54.2 3E+02 0.0064 29.3 17.1 28 250-277 67-94 (181)
338 TIGR03752 conj_TIGR03752 integ 54.1 1.2E+02 0.0027 36.5 11.8 25 335-359 117-141 (472)
339 TIGR02449 conserved hypothetic 53.5 1.3E+02 0.0029 27.0 9.2 48 307-354 15-62 (65)
340 PF07851 TMPIT: TMPIT-like pro 53.3 1.9E+02 0.0041 33.6 12.8 28 392-426 67-94 (330)
341 PRK13729 conjugal transfer pil 53.1 70 0.0015 38.6 9.6 17 838-854 443-459 (475)
342 PF07111 HCR: Alpha helical co 53.1 6E+02 0.013 32.5 24.2 30 397-426 636-665 (739)
343 KOG4005 Transcription factor X 52.9 1.9E+02 0.0041 32.2 11.9 56 301-356 92-147 (292)
344 PLN02939 transferase, transfer 52.9 6.2E+02 0.014 33.6 18.4 19 343-361 326-344 (977)
345 PF04102 SlyX: SlyX; InterPro 52.7 74 0.0016 28.4 7.6 49 313-361 4-52 (69)
346 PF09766 FimP: Fms-interacting 52.4 2.9E+02 0.0063 32.2 14.3 54 311-364 99-152 (355)
347 TIGR03495 phage_LysB phage lys 52.2 1.7E+02 0.0038 29.8 10.9 26 397-422 72-97 (135)
348 cd00632 Prefoldin_beta Prefold 51.9 2.2E+02 0.0048 27.1 13.8 27 333-359 76-102 (105)
349 PRK04406 hypothetical protein; 51.5 1.4E+02 0.0031 27.3 9.3 51 311-361 9-59 (75)
350 KOG3647 Predicted coiled-coil 51.2 4.1E+02 0.0089 30.2 14.3 49 251-299 110-158 (338)
351 TIGR01069 mutS2 MutS2 family p 50.8 3.6E+02 0.0079 34.7 16.0 35 686-720 726-762 (771)
352 KOG2398 Predicted proline-seri 50.5 6.2E+02 0.013 31.9 18.9 12 709-720 526-537 (611)
353 PRK10698 phage shock protein P 50.4 3.7E+02 0.008 29.3 17.2 46 313-358 99-144 (222)
354 PRK02119 hypothetical protein; 50.4 1E+02 0.0022 28.0 8.2 32 396-427 26-57 (73)
355 KOG4364 Chromatin assembly fac 50.4 3.4E+02 0.0074 34.3 14.7 32 397-428 355-387 (811)
356 PRK00409 recombination and DNA 50.2 2.6E+02 0.0056 36.0 14.6 11 575-585 750-760 (782)
357 PF07106 TBPIP: Tat binding pr 50.1 1.3E+02 0.0028 30.9 10.1 26 337-362 112-137 (169)
358 PF10267 Tmemb_cc2: Predicted 49.5 5.3E+02 0.011 30.8 16.1 20 342-361 299-318 (395)
359 PF15456 Uds1: Up-regulated Du 49.1 1.9E+02 0.004 29.1 10.5 31 395-425 76-106 (124)
360 PF05557 MAD: Mitotic checkpoi 49.1 21 0.00045 44.9 4.9 36 391-426 501-536 (722)
361 PRK03947 prefoldin subunit alp 49.0 1.7E+02 0.0037 29.0 10.4 30 395-424 103-132 (140)
362 TIGR02231 conserved hypothetic 48.7 1.9E+02 0.0041 35.0 12.6 29 333-361 144-172 (525)
363 KOG0240 Kinesin (SMY1 subfamil 48.5 6.4E+02 0.014 31.5 19.3 11 14-24 180-190 (607)
364 PF08581 Tup_N: Tup N-terminal 47.9 2.3E+02 0.0051 26.3 11.3 14 345-358 61-74 (79)
365 PF06637 PV-1: PV-1 protein (P 47.6 5.5E+02 0.012 30.5 15.5 37 330-366 359-395 (442)
366 KOG1103 Predicted coiled-coil 47.5 3.9E+02 0.0085 31.3 13.8 175 235-426 114-299 (561)
367 KOG0249 LAR-interacting protei 47.4 2.6E+02 0.0057 35.5 13.3 28 245-272 97-124 (916)
368 KOG4460 Nuclear pore complex, 47.1 6.6E+02 0.014 31.3 16.2 7 184-190 479-485 (741)
369 TIGR01069 mutS2 MutS2 family p 46.5 4.3E+02 0.0093 34.0 15.7 14 575-588 739-752 (771)
370 COG3096 MukB Uncharacterized p 46.4 4.3E+02 0.0093 34.0 14.7 49 313-361 1059-1107(1480)
371 TIGR03545 conserved hypothetic 46.0 2.7E+02 0.0058 34.5 13.4 21 750-770 509-529 (555)
372 PF06637 PV-1: PV-1 protein (P 45.7 5.9E+02 0.013 30.3 19.8 55 393-451 360-415 (442)
373 KOG0163 Myosin class VI heavy 45.3 8.1E+02 0.018 31.8 20.3 16 9-24 427-442 (1259)
374 PF07889 DUF1664: Protein of u 45.1 3.4E+02 0.0074 27.4 13.2 36 324-359 86-121 (126)
375 PRK00295 hypothetical protein; 44.8 1.5E+02 0.0032 26.6 8.2 47 315-361 7-53 (68)
376 KOG0288 WD40 repeat protein Ti 44.2 6.5E+02 0.014 30.3 16.3 34 489-522 225-263 (459)
377 PRK02793 phi X174 lysis protei 44.1 1.5E+02 0.0033 26.9 8.3 50 313-362 8-57 (72)
378 PRK02119 hypothetical protein; 44.1 1.6E+02 0.0036 26.7 8.5 50 312-361 8-57 (73)
379 PLN02939 transferase, transfer 43.6 3.6E+02 0.0078 35.7 14.3 25 250-274 160-184 (977)
380 TIGR02977 phageshock_pspA phag 43.3 4.5E+02 0.0099 28.3 17.7 37 314-350 100-136 (219)
381 PF15112 DUF4559: Domain of un 43.2 5.8E+02 0.013 29.5 14.5 25 199-223 112-136 (307)
382 PRK09343 prefoldin subunit bet 43.1 3.4E+02 0.0074 26.8 14.7 34 330-363 81-114 (121)
383 PRK12705 hypothetical protein; 43.0 7.3E+02 0.016 30.6 19.9 18 444-461 207-224 (508)
384 cd00632 Prefoldin_beta Prefold 42.9 1.5E+02 0.0033 28.2 8.6 36 390-425 67-102 (105)
385 PF10224 DUF2205: Predicted co 42.9 2.5E+02 0.0053 26.3 9.5 55 312-366 15-69 (80)
386 PLN03229 acetyl-coenzyme A car 42.9 8.6E+02 0.019 31.4 17.3 35 393-427 695-732 (762)
387 PRK00736 hypothetical protein; 42.5 1.3E+02 0.0028 27.0 7.5 33 396-428 22-54 (68)
388 PRK00736 hypothetical protein; 42.5 1.7E+02 0.0036 26.3 8.2 47 315-361 7-53 (68)
389 PF04012 PspA_IM30: PspA/IM30 42.3 4.5E+02 0.0098 28.0 18.9 24 252-275 29-52 (221)
390 PF06705 SF-assemblin: SF-asse 42.3 4.9E+02 0.011 28.4 23.7 32 390-421 158-189 (247)
391 PRK03947 prefoldin subunit alp 42.2 3.6E+02 0.0077 26.8 14.5 20 252-271 12-31 (140)
392 PF10226 DUF2216: Uncharacteri 42.2 4.8E+02 0.01 28.2 16.3 32 245-276 47-78 (195)
393 PRK04325 hypothetical protein; 42.1 1.8E+02 0.0039 26.5 8.5 48 314-361 10-57 (74)
394 KOG3091 Nuclear pore complex, 41.7 7.5E+02 0.016 30.4 17.8 26 394-419 467-492 (508)
395 PF07106 TBPIP: Tat binding pr 41.4 78 0.0017 32.5 6.9 54 312-365 78-133 (169)
396 TIGR01000 bacteriocin_acc bact 41.2 6.9E+02 0.015 29.8 22.0 26 401-426 285-310 (457)
397 PF13863 DUF4200: Domain of un 40.8 3.4E+02 0.0074 26.2 16.7 23 332-354 86-108 (126)
398 PF13166 AAA_13: AAA domain 40.8 8.2E+02 0.018 30.5 22.0 31 327-357 370-400 (712)
399 TIGR00293 prefoldin, archaeal 40.7 3.5E+02 0.0076 26.3 11.2 35 390-424 83-117 (126)
400 smart00806 AIP3 Actin interact 40.6 7.3E+02 0.016 29.9 19.7 107 252-358 154-274 (426)
401 PF09744 Jnk-SapK_ap_N: JNK_SA 40.5 4.5E+02 0.0097 27.5 16.5 64 251-321 48-111 (158)
402 KOG3850 Predicted membrane pro 40.5 7.1E+02 0.015 29.7 17.2 56 303-358 314-370 (455)
403 PF14197 Cep57_CLD_2: Centroso 40.3 2.8E+02 0.0062 25.1 10.3 19 257-275 2-20 (69)
404 PLN03237 DNA topoisomerase 2; 40.1 2.8E+02 0.006 38.1 12.9 142 340-508 1125-1276(1465)
405 PF12761 End3: Actin cytoskele 39.7 2.8E+02 0.006 30.0 10.6 21 254-274 97-117 (195)
406 PF08657 DASH_Spc34: DASH comp 39.6 1.7E+02 0.0036 32.9 9.4 25 388-412 234-258 (259)
407 KOG1151 Tousled-like protein k 39.6 8.1E+02 0.017 30.1 15.4 84 551-643 416-511 (775)
408 KOG4637 Adaptor for phosphoino 39.4 4.6E+02 0.01 31.1 12.9 113 304-426 134-249 (464)
409 COG1382 GimC Prefoldin, chaper 38.9 4.2E+02 0.0091 26.6 14.5 39 324-362 74-112 (119)
410 PF08581 Tup_N: Tup N-terminal 38.5 3.3E+02 0.0072 25.3 11.3 11 340-350 63-73 (79)
411 PF06632 XRCC4: DNA double-str 38.5 5E+02 0.011 30.3 13.3 22 335-356 188-209 (342)
412 TIGR03545 conserved hypothetic 38.3 3.4E+02 0.0074 33.6 12.6 29 398-426 242-270 (555)
413 PF14282 FlxA: FlxA-like prote 38.1 2.8E+02 0.0062 26.8 9.7 55 308-362 21-79 (106)
414 TIGR02231 conserved hypothetic 38.0 1.6E+02 0.0035 35.6 9.8 38 389-426 134-171 (525)
415 PRK00846 hypothetical protein; 38.0 2.3E+02 0.005 26.3 8.5 51 313-363 13-63 (77)
416 PF01486 K-box: K-box region; 37.9 3E+02 0.0065 26.0 9.7 26 249-274 15-40 (100)
417 PF14197 Cep57_CLD_2: Centroso 37.8 3.1E+02 0.0067 24.8 9.5 18 253-270 5-22 (69)
418 PF12004 DUF3498: Domain of un 37.6 11 0.00024 45.4 0.0 18 35-52 101-118 (495)
419 PF06548 Kinesin-related: Kine 37.5 8.4E+02 0.018 29.7 20.3 23 337-359 399-421 (488)
420 KOG0247 Kinesin-like protein [ 36.7 8.3E+02 0.018 31.5 15.3 34 579-612 773-806 (809)
421 PF15450 DUF4631: Domain of un 36.5 9.1E+02 0.02 29.9 19.0 18 150-167 195-212 (531)
422 PRK02793 phi X174 lysis protei 36.2 2.5E+02 0.0055 25.5 8.4 32 396-427 25-56 (72)
423 PF07028 DUF1319: Protein of u 36.1 3.9E+02 0.0084 27.1 10.3 33 325-357 51-83 (126)
424 KOG0972 Huntingtin interacting 35.9 5.9E+02 0.013 29.3 12.8 25 402-426 303-327 (384)
425 KOG4403 Cell surface glycoprot 35.9 8.3E+02 0.018 29.6 14.4 14 413-426 363-376 (575)
426 PF06705 SF-assemblin: SF-asse 35.9 6.2E+02 0.013 27.7 22.0 27 391-417 148-174 (247)
427 PF06156 DUF972: Protein of un 35.8 2.3E+02 0.0049 27.8 8.6 49 314-362 9-57 (107)
428 PF08580 KAR9: Yeast cortical 35.7 5.9E+02 0.013 32.4 14.3 19 636-654 431-450 (683)
429 KOG2077 JNK/SAPK-associated pr 35.6 2.5E+02 0.0055 34.8 10.5 114 295-410 304-417 (832)
430 PRK00295 hypothetical protein; 35.3 2.1E+02 0.0046 25.7 7.7 32 396-427 22-53 (68)
431 KOG4005 Transcription factor X 35.3 3.1E+02 0.0068 30.6 10.3 22 249-270 93-114 (292)
432 PF07794 DUF1633: Protein of u 35.3 5.3E+02 0.011 31.6 12.8 44 180-223 510-553 (790)
433 PF12329 TMF_DNA_bd: TATA elem 35.3 3.5E+02 0.0076 24.7 10.0 14 341-354 47-60 (74)
434 PF05266 DUF724: Protein of un 35.0 5.9E+02 0.013 27.3 13.2 55 310-364 128-182 (190)
435 cd00890 Prefoldin Prefoldin is 34.6 3.1E+02 0.0067 26.3 9.5 104 322-426 1-127 (129)
436 PF02994 Transposase_22: L1 tr 34.4 1.3E+02 0.0028 35.2 7.9 45 318-362 142-186 (370)
437 PF15272 BBP1_C: Spindle pole 34.4 6.4E+02 0.014 27.4 18.5 71 287-360 81-151 (196)
438 PF05546 She9_MDM33: She9 / Md 34.0 6.6E+02 0.014 27.5 13.2 53 314-366 33-85 (207)
439 PF01576 Myosin_tail_1: Myosin 33.8 14 0.0003 47.5 0.0 13 313-325 384-396 (859)
440 PF04102 SlyX: SlyX; InterPro 33.6 2.3E+02 0.005 25.3 7.7 46 319-364 3-48 (69)
441 PF10226 DUF2216: Uncharacteri 33.4 6.5E+02 0.014 27.3 16.3 7 447-453 174-180 (195)
442 PF10234 Cluap1: Clusterin-ass 33.2 7.7E+02 0.017 28.0 17.9 42 312-353 175-216 (267)
443 KOG3809 Microtubule-binding pr 33.2 7E+02 0.015 30.3 13.2 22 176-197 343-364 (583)
444 PF15035 Rootletin: Ciliary ro 32.9 6.3E+02 0.014 26.9 15.4 39 299-337 81-119 (182)
445 PF05791 Bacillus_HBL: Bacillu 32.6 6.1E+02 0.013 26.7 14.3 68 290-357 112-179 (184)
446 PF03961 DUF342: Protein of un 32.2 2.7E+02 0.0058 33.2 10.3 36 391-426 373-408 (451)
447 PF09798 LCD1: DNA damage chec 32.1 1.7E+02 0.0038 36.8 8.9 33 394-426 27-59 (654)
448 PF15556 Zwint: ZW10 interacto 32.0 7.2E+02 0.016 27.3 19.5 111 244-357 57-171 (252)
449 PF02403 Seryl_tRNA_N: Seryl-t 31.9 4.5E+02 0.0097 24.9 11.8 33 330-362 70-102 (108)
450 KOG2010 Double stranded RNA bi 31.8 2.5E+02 0.0055 32.6 9.2 14 515-528 330-343 (405)
451 PF10205 KLRAQ: Predicted coil 31.7 4.1E+02 0.0089 26.0 9.4 37 316-352 15-51 (102)
452 PRK06811 RNA polymerase factor 31.7 2.5E+02 0.0055 28.8 8.9 144 747-903 16-175 (189)
453 PF09744 Jnk-SapK_ap_N: JNK_SA 31.5 6.2E+02 0.014 26.4 17.4 28 330-357 85-112 (158)
454 KOG4438 Centromere-associated 31.5 1E+03 0.022 28.8 20.8 27 253-279 173-199 (446)
455 PF04065 Not3: Not1 N-terminal 31.2 7.7E+02 0.017 27.4 14.7 79 333-422 73-151 (233)
456 PF08647 BRE1: BRE1 E3 ubiquit 31.2 4.1E+02 0.009 25.2 9.4 6 346-351 57-62 (96)
457 PF05600 DUF773: Protein of un 30.9 1.1E+03 0.024 29.0 15.6 43 315-357 434-476 (507)
458 PF02994 Transposase_22: L1 tr 30.7 1.3E+02 0.0027 35.2 7.1 43 315-357 146-188 (370)
459 COG3074 Uncharacterized protei 30.6 4.3E+02 0.0094 24.3 10.7 13 345-357 57-69 (79)
460 PF09731 Mitofilin: Mitochondr 30.4 1.1E+03 0.024 28.9 21.7 31 492-522 443-474 (582)
461 KOG2685 Cystoskeletal protein 30.4 1E+03 0.022 28.6 14.8 111 316-426 274-391 (421)
462 KOG3809 Microtubule-binding pr 30.2 3.9E+02 0.0085 32.2 10.7 26 332-357 544-569 (583)
463 PF12761 End3: Actin cytoskele 30.0 2.4E+02 0.0051 30.6 8.3 30 384-413 165-194 (195)
464 PRK10698 phage shock protein P 29.9 7.6E+02 0.016 26.9 22.6 17 394-410 167-183 (222)
465 PF04880 NUDE_C: NUDE protein, 29.9 54 0.0012 34.4 3.5 43 350-423 2-47 (166)
466 COG1842 PspA Phage shock prote 29.8 7.9E+02 0.017 27.1 18.5 114 252-365 30-144 (225)
467 PRK12523 RNA polymerase sigma 29.6 49 0.0011 33.3 3.2 45 741-791 2-46 (172)
468 PRK13169 DNA replication intia 29.5 3.2E+02 0.007 27.0 8.5 47 314-360 9-55 (110)
469 PF13166 AAA_13: AAA domain 29.5 1.2E+03 0.026 29.1 20.9 15 37-51 61-76 (712)
470 COG3206 GumC Uncharacterized p 29.4 8.4E+02 0.018 29.0 13.8 111 255-365 287-397 (458)
471 PRK10803 tol-pal system protei 29.4 7.3E+02 0.016 27.6 12.4 100 325-462 38-140 (263)
472 KOG3647 Predicted coiled-coil 29.3 9.1E+02 0.02 27.6 20.0 15 552-566 315-329 (338)
473 PRK11546 zraP zinc resistance 29.1 2E+02 0.0043 29.7 7.3 17 342-358 90-106 (143)
474 KOG4677 Golgi integral membran 29.1 1.1E+03 0.025 28.7 19.0 34 565-611 445-478 (554)
475 PF07851 TMPIT: TMPIT-like pro 29.0 6.1E+02 0.013 29.6 11.9 20 340-359 67-86 (330)
476 PF08702 Fib_alpha: Fibrinogen 28.9 6.5E+02 0.014 25.8 17.3 31 332-362 102-132 (146)
477 PF14817 HAUS5: HAUS augmin-li 28.8 8.4E+02 0.018 30.9 13.9 30 247-276 80-109 (632)
478 PF05529 Bap31: B-cell recepto 28.7 4.7E+02 0.01 27.4 10.3 29 333-361 160-188 (192)
479 TIGR02977 phageshock_pspA phag 28.6 7.7E+02 0.017 26.6 22.6 36 321-356 100-135 (219)
480 PF03962 Mnd1: Mnd1 family; I 28.5 7.4E+02 0.016 26.4 13.1 23 251-273 67-89 (188)
481 PF05529 Bap31: B-cell recepto 28.4 4.9E+02 0.011 27.2 10.4 17 338-354 172-188 (192)
482 PF12004 DUF3498: Domain of un 28.0 20 0.00043 43.4 0.0 15 257-271 373-387 (495)
483 PF12777 MT: Microtubule-bindi 28.0 9.3E+02 0.02 27.7 13.4 30 653-688 292-321 (344)
484 PRK00846 hypothetical protein; 27.9 4.4E+02 0.0095 24.6 8.6 33 397-429 31-63 (77)
485 PF14282 FlxA: FlxA-like prote 27.9 2.2E+02 0.0048 27.5 7.1 48 313-360 19-70 (106)
486 PF03915 AIP3: Actin interacti 27.9 1.1E+03 0.025 28.3 18.1 107 249-364 216-322 (424)
487 PF10243 MIP-T3: Microtubule-b 27.9 20 0.00043 43.6 0.0 71 288-358 456-526 (539)
488 KOG2685 Cystoskeletal protein 27.5 1.2E+03 0.025 28.3 17.5 39 390-428 282-320 (421)
489 PF14362 DUF4407: Domain of un 26.4 8.1E+02 0.018 27.4 12.3 132 217-348 106-253 (301)
490 PF12777 MT: Microtubule-bindi 26.2 2.5E+02 0.0054 32.3 8.4 92 297-405 219-310 (344)
491 PF06632 XRCC4: DNA double-str 26.0 7.2E+02 0.016 29.1 11.9 83 316-421 126-208 (342)
492 PF07989 Microtub_assoc: Micro 25.9 5.2E+02 0.011 23.7 9.4 73 248-344 2-74 (75)
493 PRK05431 seryl-tRNA synthetase 25.9 2.9E+02 0.0062 32.9 9.0 85 334-432 28-112 (425)
494 PF14257 DUF4349: Domain of un 25.8 2.3E+02 0.005 31.0 7.8 66 330-424 128-193 (262)
495 PF06156 DUF972: Protein of un 25.8 4E+02 0.0088 26.1 8.5 55 294-348 3-57 (107)
496 PF03980 Nnf1: Nnf1 ; InterPr 25.6 5.9E+02 0.013 24.3 13.0 105 313-426 2-106 (109)
497 KOG1118 Lysophosphatidic acid 25.6 1.1E+03 0.024 27.5 17.4 196 280-508 109-318 (366)
498 PF12795 MscS_porin: Mechanose 25.6 8.9E+02 0.019 26.3 22.2 173 207-426 22-211 (240)
499 PF01486 K-box: K-box region; 25.5 5.8E+02 0.012 24.1 9.6 84 312-425 11-100 (100)
500 PF01576 Myosin_tail_1: Myosin 25.4 23 0.00051 45.5 0.0 165 234-425 182-346 (859)
No 1
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-56 Score=529.99 Aligned_cols=381 Identities=24% Similarity=0.330 Sum_probs=274.5
Q ss_pred CCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCC--CceEeec-----ccc--cccceeEE
Q 002175 4 SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG--LAKIRLQ-----SLE--SSIELVQE 74 (956)
Q Consensus 4 s~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~--~~~v~~~-----~~~--~V~gLtev 74 (956)
.+.+.|||||++.+||+.+.. .+.+|+|+|||+|+|||.++|||++.... ..++..+ +.+ .|.|+.++
T Consensus 157 l~~~aGIIPRal~~IFd~Le~---~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi 233 (1041)
T KOG0243|consen 157 LPSEAGIIPRALRQIFDTLEA---QGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEI 233 (1041)
T ss_pred CCccCCcchHHHHHHHHHHHh---cCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCcccCCcCcEEEecceee
Confidence 678899999999999999974 44899999999999999999999986653 2222222 223 45599999
Q ss_pred EeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCC---ceeeeeeEEeeccCCCccccCCCcchhh
Q 002175 75 KVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG---ENLYSKLSLVDLAGSEGLIAEDDSGERI 147 (956)
Q Consensus 75 ~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~---~~~~SkLsfVDLAGSER~~kt~s~G~rl 147 (956)
.|.|..|++.+|..|...|++++|. |||||+||+|+|.......+ -..+|||+||||||||.++++|+.+.|.
T Consensus 234 ~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RA 313 (1041)
T KOG0243|consen 234 IVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRA 313 (1041)
T ss_pred eecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchh
Confidence 9999999999999999999999997 99999999999987644322 3567999999999999999999999999
Q ss_pred HhHHHHhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccc
Q 002175 148 TDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS 227 (956)
Q Consensus 148 kEa~~INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~ 227 (956)
+||+.||+||++||+||+||.++..|||||+|||||||||+|||.++|+||+||||+..+++||++||.||.|||+|+++
T Consensus 314 rEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNK 393 (1041)
T KOG0243|consen 314 REAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNK 393 (1041)
T ss_pred HHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH--HHHHHHHHhhhHHHHHHHHH
Q 002175 228 LGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK--AWKVSFTLQSDLKSENYMLA 305 (956)
Q Consensus 228 ~~n~~~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~--~~k~~~eLE~eL~~e~~~Le 305 (956)
|..+..+. +...+++|-.||++|+..+....+.+-.+..+-.- ..........++.+....++
T Consensus 394 PevNQkl~---------------K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~ 458 (1041)
T KOG0243|consen 394 PEVNQKLM---------------KKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELE 458 (1041)
T ss_pred CccchHHH---------------HHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76665443 34566777777888887777776665443322111 00001111122222222222
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccc
Q 002175 306 DKHKIEKEQNAQL---RNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVL 382 (956)
Q Consensus 306 ek~k~~kee~~qL---q~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~ 382 (956)
...+..+...+.+ ......+....+.++.+++....++..+++++.+++.+|.+.....+.
T Consensus 459 ~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~---------------- 522 (1041)
T KOG0243|consen 459 NLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQ---------------- 522 (1041)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 2222211111111 112223333444466666666666777777777766665433322221
Q ss_pred cccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 383 RTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 383 k~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
......++.....++...++.-..+...|+.+|..+
T Consensus 523 --------~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~~ 558 (1041)
T KOG0243|consen 523 --------QEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDRK 558 (1041)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 111122333334445555566666777777777777
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-55 Score=513.32 Aligned_cols=257 Identities=30% Similarity=0.466 Sum_probs=233.1
Q ss_pred CCCCC--CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCC-cCCCCCceEeeccc--ccccceeEEE
Q 002175 1 MEGSS--HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP-QTGNGLAKIRLQSL--ESSIELVQEK 75 (956)
Q Consensus 1 M~Gs~--~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~-~~~~~~~~v~~~~~--~~V~gLtev~ 75 (956)
|+|.. +++|||||+|++||.+|......+..|.|.|||+|||||.|+|||+ |.++..++++..+. .||.+|+...
T Consensus 105 MMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~a 184 (1221)
T KOG0245|consen 105 MMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLA 184 (1221)
T ss_pred eeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCCCceeeccCccChhHhHhhhcc
Confidence 78887 9999999999999999998778889999999999999999999999 87788888888775 5788999999
Q ss_pred eCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC--CC--ceeeeeeEEeeccCCCccccCCCcchhh
Q 002175 76 VDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TG--ENLYSKLSLVDLAGSEGLIAEDDSGERI 147 (956)
Q Consensus 76 V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~--~~--~~~~SkLsfVDLAGSER~~kt~s~G~rl 147 (956)
|+|+.|+.+++..|++.|++++|+ |||||+||||.+.|.... ++ ...+|+|+|||||||||++.+|+.|.|+
T Consensus 185 V~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RL 264 (1221)
T KOG0245|consen 185 VTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRL 264 (1221)
T ss_pred cccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCCCccch
Confidence 999999999999999999999998 999999999999997553 32 4678999999999999999999999999
Q ss_pred HhHHHHhhhHHHHHHHHHHhhcC-------CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHH
Q 002175 148 TDVLHVMKSLSALGDVLSSLTSR-------KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR 220 (956)
Q Consensus 148 kEa~~INkSL~aLg~VI~aLs~k-------~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsr 220 (956)
+||.+||+||++||+||.+|++. +.+||||||-||+||++.|||||||+||+++||...||+|||+||+||.|
T Consensus 265 KEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdR 344 (1221)
T KOG0245|consen 265 KEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADR 344 (1221)
T ss_pred hcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhH
Confidence 99999999999999999999862 35899999999999999999999999999999999999999999999999
Q ss_pred hcccccccCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 221 ARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAN 273 (956)
Q Consensus 221 AK~I~~~~~n~~~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~ 273 (956)
||+|++.+..+.. ...+.|.+|++|+.+|+..+....
T Consensus 345 AK~Iv~~avVNEd----------------pnaKLIRELreEv~rLksll~~~~ 381 (1221)
T KOG0245|consen 345 AKQIVNNAVVNED----------------PNAKLIRELREEVARLKSLLRAQG 381 (1221)
T ss_pred hhhhhccceeCCC----------------ccHHHHHHHHHHHHHHHHHHhccc
Confidence 9998775544332 345688999999999999887653
No 3
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=8.9e-53 Score=474.37 Aligned_cols=230 Identities=33% Similarity=0.489 Sum_probs=211.0
Q ss_pred CCCCCC---CCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeecc--cccccceeEEE
Q 002175 1 MEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS--LESSIELVQEK 75 (956)
Q Consensus 1 M~Gs~~---d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~--~~~V~gLtev~ 75 (956)
|+|..+ ..|||||++++||+.|.. .+.+.+|.|+|||||||+|+|+|||++.+.+. .+..+. ..+|.|+++..
T Consensus 100 m~G~~~d~~~~GIipRi~~diF~~Iys-~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nl-svheDK~~v~~vkG~t~~~ 177 (607)
T KOG0240|consen 100 MEGIGHDPEEMGIIPRILNDIFDHIYS-MEENLEFHVKVSYFEIYMEKIRDLLDPEKTNL-SVHEDKNRVPYVKGVTERF 177 (607)
T ss_pred ecccCCChhhcCcHHHHHHHHHHHHhc-CcccceEEEEEEeehhhhhHHHHHhCcccCCc-eeecccCCCceecCceeEE
Confidence 556554 679999999999999986 46678999999999999999999999877665 444442 35678999999
Q ss_pred eCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175 76 VDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVL 151 (956)
Q Consensus 76 V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~ 151 (956)
|.++++++++++.|..+|+++.|+ |||||+||+|+|.|.+..+.....|+|.||||||||+++++|+.|.-+.||.
T Consensus 178 v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK 257 (607)
T KOG0240|consen 178 VSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAK 257 (607)
T ss_pred ecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcccccccCCCCccchhHHHHh
Confidence 999999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhcC-CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCc
Q 002175 152 HVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN 230 (956)
Q Consensus 152 ~INkSL~aLg~VI~aLs~k-~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n 230 (956)
+||+||.+||+||++|+++ ..|||||||||||||+|+|||||||.+|+|++|+..+..||.+||+|+.||+.|++.+..
T Consensus 258 ~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~ 337 (607)
T KOG0240|consen 258 NINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWV 337 (607)
T ss_pred hhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhh
Confidence 9999999999999999997 799999999999999999999999999999999999999999999999999998776554
Q ss_pred cc
Q 002175 231 RD 232 (956)
Q Consensus 231 ~~ 232 (956)
+.
T Consensus 338 n~ 339 (607)
T KOG0240|consen 338 NL 339 (607)
T ss_pred hh
Confidence 43
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-54 Score=497.79 Aligned_cols=255 Identities=33% Similarity=0.462 Sum_probs=222.9
Q ss_pred CCCC-CCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeC
Q 002175 1 MEGS-SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVD 77 (956)
Q Consensus 1 M~Gs-~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~ 77 (956)
|.|+ ++.+|||||+|.+||..|+... ....|.|+|||+|||||+|+|||++...+...++.++. .+|.|++++.|.
T Consensus 103 M~G~~~~~~GiiPraf~~LF~~I~~~~-~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~ 181 (574)
T KOG4280|consen 103 MIGPDPELRGLIPRAFEHLFRHIDERK-EKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELREDPKCGVYVENLSEMDVE 181 (574)
T ss_pred eeCCChhhCCchhHHHHHHHHHHHhcc-ccceEEEEeehHHHHhHHHHHHhCccCcCCceeeEcCCCceEecCcceeecC
Confidence 7888 6789999999999999998653 34489999999999999999999998866667777663 467799999999
Q ss_pred CHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeecc-C--CCceeeeeeEEeeccCCCccccCCCcchhhHhH
Q 002175 78 NPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-I--TGENLYSKLSLVDLAGSEGLIAEDDSGERITDV 150 (956)
Q Consensus 78 S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~-~--~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa 150 (956)
|+++++.++..|..+|.+++|. |||||+||||+|.+... . ......|+|+|||||||||..++++.|.+++||
T Consensus 182 s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa 261 (574)
T KOG4280|consen 182 SAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEA 261 (574)
T ss_pred CHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhhhcccCccchhhhhh
Confidence 9999999999999999999987 99999999999999332 2 223567999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhhcCCC-CcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccC
Q 002175 151 LHVMKSLSALGDVLSSLTSRKD-IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG 229 (956)
Q Consensus 151 ~~INkSL~aLg~VI~aLs~k~~-~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~ 229 (956)
.+||+||++||+||.+|.++.. ||||||||||+||+|+|||||+|+||+||+|+..+++||++||+||+|||.|++.+.
T Consensus 262 ~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ 341 (574)
T KOG4280|consen 262 TNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPV 341 (574)
T ss_pred cccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999776 999999999999999999999999999999999999999999999999999876543
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 230 NRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEA 272 (956)
Q Consensus 230 n~~~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~ 272 (956)
.+... .+..+..|+.||..|+.++...
T Consensus 342 ined~----------------~~~~~~~lq~ei~~Lk~~l~~~ 368 (574)
T KOG4280|consen 342 INEDP----------------KDALLRELQEEIERLKKELDPG 368 (574)
T ss_pred ccCCc----------------chhhHHHHHHHHHHHHHhhccc
Confidence 33221 2455677777777777777654
No 5
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-51 Score=469.81 Aligned_cols=227 Identities=25% Similarity=0.345 Sum_probs=205.3
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccC-------------------------------------------------------
Q 002175 1 MEGSSHDRGLYARCFEELFDLSNSD------------------------------------------------------- 25 (956)
Q Consensus 1 M~Gs~~d~GIIPRal~dLF~~I~~~------------------------------------------------------- 25 (956)
|+|++.++||+|||++.||+.|+..
T Consensus 132 m~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~ 211 (809)
T KOG0247|consen 132 MTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIH 211 (809)
T ss_pred eecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcc
Confidence 7899999999999999999998541
Q ss_pred --------CCCCceEEEEEEEEEEEcCcccccCCcCCCCC-------ceEeecccccccceeEEEeCCHHHHHHHHHHHH
Q 002175 26 --------TTATARFNFAVTVFELYNEQLRELLPQTGNGL-------AKIRLQSLESSIELVQEKVDNPLEFSKVLKSAF 90 (956)
Q Consensus 26 --------~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~-------~~v~~~~~~~V~gLtev~V~S~eE~l~lL~~G~ 90 (956)
.+.+..|+|+|||+|||||.|||||.+.+... ......+..+|.|+++|+|.|.+|++++|+.|.
T Consensus 212 ~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGq 291 (809)
T KOG0247|consen 212 VIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQ 291 (809)
T ss_pred hhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHH
Confidence 13567899999999999999999998864221 123335557899999999999999999999999
Q ss_pred hhccCcCCC----CCcceEEEEEEEEeeccC--CCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHhhhHHHHHHHH
Q 002175 91 QSRGNDVSK----FNVSHLIIMIHIYYNNLI--TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVL 164 (956)
Q Consensus 91 ~~R~~asT~----SSRSH~IFtI~V~q~~~~--~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~INkSL~aLg~VI 164 (956)
++|++++|. |||||+||+|.|.+.... .....+|.|+|||||||||..++++.|.|++||++||.||++||+||
T Consensus 292 k~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Ci 371 (809)
T KOG0247|consen 292 KRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCI 371 (809)
T ss_pred hhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHH
Confidence 999999998 999999999999998776 45678899999999999999999999999999999999999999999
Q ss_pred HHhhcC-----CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccc
Q 002175 165 SSLTSR-----KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLS 227 (956)
Q Consensus 165 ~aLs~k-----~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~ 227 (956)
.+|+.+ +.+|||||||||++++++|.|.++++||+||+|...+|+|+++.|+||+.+++|.+.
T Consensus 372 e~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 372 DVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVA 439 (809)
T ss_pred HHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhccccccc
Confidence 999974 379999999999999999999999999999999999999999999999999998764
No 6
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.2e-50 Score=475.25 Aligned_cols=230 Identities=30% Similarity=0.478 Sum_probs=210.9
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN 78 (956)
Q Consensus 1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S 78 (956)
|.|+..+|||||+++.+||+.|... .+..|.|.|||+|||||.|||||++.+..+ .++.+.. ..|.|++++.|.|
T Consensus 104 M~G~~~~PGii~la~~dif~~I~~~--~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L-~irED~~~gi~V~gL~e~~v~s 180 (675)
T KOG0242|consen 104 MSGSEDDPGIIPLAMKDIFEKIDKS--GEREFSVRVSYLEIYNERIRDLLNPDGGDL-RLREDSEGGIVVPGLTEETVSS 180 (675)
T ss_pred EeccCCCCCeeehHHHHHHHHHHhc--CCceeEEEEEEEEEeccccccccCCCCCCc-eEeEcCCCCEEecCCeeecCCC
Confidence 8999999999999999999999864 388999999999999999999999977664 5666554 3456999999999
Q ss_pred HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHh
Q 002175 79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVM 154 (956)
Q Consensus 79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~IN 154 (956)
++++.++|..|..+|+++.|. |||||+||+|.|.+....... ..|+|+|||||||||+.++++.|.|++||.+||
T Consensus 181 ~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~IN 259 (675)
T KOG0242|consen 181 REELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHIN 259 (675)
T ss_pred HHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhhhhhhhhhhhhccceeccccchhh
Confidence 999999999999999999998 999999999999998765443 779999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcC--CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCccc
Q 002175 155 KSLSALGDVLSSLTSR--KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 232 (956)
Q Consensus 155 kSL~aLg~VI~aLs~k--~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n~~ 232 (956)
+||++||+||.+|.++ ..||||||||||||||++|||||+|+|||||+|...+|+||.+||+||++|++|++.+..+.
T Consensus 260 rSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~ 339 (675)
T KOG0242|consen 260 RSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNV 339 (675)
T ss_pred HHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccce
Confidence 9999999999999986 46899999999999999999999999999999999999999999999999999998776554
Q ss_pred hh
Q 002175 233 TI 234 (956)
Q Consensus 233 ~i 234 (956)
..
T Consensus 340 ~~ 341 (675)
T KOG0242|consen 340 IL 341 (675)
T ss_pred ec
Confidence 43
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.8e-49 Score=475.47 Aligned_cols=255 Identities=25% Similarity=0.395 Sum_probs=217.8
Q ss_pred CCCChHHHHHHHHHHhhccC----CCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCCH
Q 002175 6 HDRGLYARCFEELFDLSNSD----TTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDNP 79 (956)
Q Consensus 6 ~d~GIIPRal~dLF~~I~~~----~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S~ 79 (956)
.++|||||++++||..|... .+....|.|+|||+|||||+|||||++.... ..++.+.. .+|.|++++.|.|+
T Consensus 198 ~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~k~-L~IRED~kgGv~VeGLTEv~V~S~ 276 (1320)
T PLN03188 198 DQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKN-LQIREDVKSGVYVENLTEEYVKTM 276 (1320)
T ss_pred ccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccccCC-ceEEEcCCCCeEeCCCeEEeCCCH
Confidence 57999999999999998642 2345689999999999999999999986554 34555443 46779999999999
Q ss_pred HHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC--C--CceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175 80 LEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--T--GENLYSKLSLVDLAGSEGLIAEDDSGERITDVL 151 (956)
Q Consensus 80 eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~--~--~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~ 151 (956)
+|++.+|..|..+|+++.|. |||||+||+|+|.+.... + .....|+|+|||||||||..++++.|.+++|++
T Consensus 277 ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~ 356 (1320)
T PLN03188 277 KDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAG 356 (1320)
T ss_pred HHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHH
Confidence 99999999999999999987 999999999999876432 2 234679999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhc-----CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccc
Q 002175 152 HVMKSLSALGDVLSSLTS-----RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226 (956)
Q Consensus 152 ~INkSL~aLg~VI~aLs~-----k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~ 226 (956)
+||+||++||+||.+|+. +..|||||+||||+||+|+|||||+|+|||||||...+++||++||+||+||+.|++
T Consensus 357 ~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKN 436 (1320)
T PLN03188 357 NINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKN 436 (1320)
T ss_pred HHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999985 347999999999999999999999999999999999999999999999999999887
Q ss_pred ccCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 227 SLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKE 271 (956)
Q Consensus 227 ~~~n~~~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~ 271 (956)
.+..+.... ..+..+...|.+|+.|+..|+.....
T Consensus 437 kpvvNe~~~----------~~vn~LrelIr~Lk~EL~rLK~~~~~ 471 (1320)
T PLN03188 437 KAVVNEVMQ----------DDVNFLREVIRQLRDELQRVKANGNN 471 (1320)
T ss_pred cceeccchh----------hhHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 765443321 12234566788888888888877543
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.3e-49 Score=437.88 Aligned_cols=222 Identities=30% Similarity=0.493 Sum_probs=204.4
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN 78 (956)
Q Consensus 1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S 78 (956)
|+|+++++|||||++++||+.+... ..+..|.|+|||+|||||+|||||++...+ ..++.+.. .++.|++++.|.|
T Consensus 105 m~G~~~~~Giipr~~~~LF~~i~~~-~~~~~~~v~vS~~EIyne~v~DLL~~~~~~-l~i~ed~~~~~~v~gl~~~~v~s 182 (338)
T cd01370 105 MLGTDSDPGLMVLTMKDLFDKIEER-KDDKEFEVSLSYLEIYNETIRDLLSPSSGP-LELREDPNQGIVVAGLTEHQPKS 182 (338)
T ss_pred EcCCCCCCchHHHHHHHHHHhhhhc-ccCceEEEEEEEEEEECCEEEECCCCCCCC-ceEEEcCCCCEEeCCcEEEEeCC
Confidence 7899999999999999999999864 356899999999999999999999986443 45666553 4567999999999
Q ss_pred HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC---CCceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175 79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVL 151 (956)
Q Consensus 79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~---~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~ 151 (956)
++|++.+|..|.++|+++.|. |||||+||+|+|.+.+.. ......|+|+|||||||||..+++..|.+++|+.
T Consensus 183 ~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~ 262 (338)
T cd01370 183 AEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGA 262 (338)
T ss_pred HHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccc
Confidence 999999999999999999887 999999999999998765 4567789999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhcCC---CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccc
Q 002175 152 HVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 224 (956)
Q Consensus 152 ~INkSL~aLg~VI~aLs~k~---~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I 224 (956)
+||+||++|++||.+|++++ .|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||++||+|
T Consensus 263 ~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 263 NINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999977 89999999999999999999999999999999999999999999999999975
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=8e-49 Score=433.45 Aligned_cols=223 Identities=34% Similarity=0.458 Sum_probs=198.5
Q ss_pred CCCCC--------CCCChHHHHHHHHHHhhccC---CCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--cc
Q 002175 1 MEGSS--------HDRGLYARCFEELFDLSNSD---TTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ES 67 (956)
Q Consensus 1 M~Gs~--------~d~GIIPRal~dLF~~I~~~---~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~ 67 (956)
|+|+. .++|||||++++||..+... ...+..|.|+|||+|||||+|||||.+..... .++.+.. .+
T Consensus 92 m~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l-~i~e~~~~~~~ 170 (337)
T cd01373 92 MMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNL-KIREDIKKGVY 170 (337)
T ss_pred ecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCc-eEEECCCCCEE
Confidence 67765 46899999999999998643 23457899999999999999999998865543 4555443 45
Q ss_pred ccceeEEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCC--ceeeeeeEEeeccCCCccccCC
Q 002175 68 SIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG--ENLYSKLSLVDLAGSEGLIAED 141 (956)
Q Consensus 68 V~gLtev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~--~~~~SkLsfVDLAGSER~~kt~ 141 (956)
+.|++++.|.|++|++.+|..|..+|++++|. |||||+||+|+|.+.+...+ ....|+|+|||||||||..+++
T Consensus 171 v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLAGSEr~~~~~ 250 (337)
T cd01373 171 VENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVDLAGSERQKDDG 250 (337)
T ss_pred eCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEEECCCCCcccccC
Confidence 67999999999999999999999999998886 99999999999998765443 3567999999999999999999
Q ss_pred CcchhhHhHHHHhhhHHHHHHHHHHhhc----CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHH
Q 002175 142 DSGERITDVLHVMKSLSALGDVLSSLTS----RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNF 217 (956)
Q Consensus 142 s~G~rlkEa~~INkSL~aLg~VI~aLs~----k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrF 217 (956)
+.|.+++|+.+||+||++|++||.+|++ +..|||||+||||+||+|+|||||+|+||+||||+..+++||++||+|
T Consensus 251 ~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~f 330 (337)
T cd01373 251 AEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKF 330 (337)
T ss_pred CccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHH
Confidence 9999999999999999999999999985 458999999999999999999999999999999999999999999999
Q ss_pred HHHhccc
Q 002175 218 SSRARST 224 (956)
Q Consensus 218 AsrAK~I 224 (956)
|.|||.|
T Consensus 331 a~rak~I 337 (337)
T cd01373 331 AQRAKLI 337 (337)
T ss_pred HHHhhcC
Confidence 9999875
No 10
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.5e-49 Score=452.09 Aligned_cols=303 Identities=29% Similarity=0.429 Sum_probs=249.8
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCC-CceEeeccc--ccccceeEEEeC
Q 002175 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG-LAKIRLQSL--ESSIELVQEKVD 77 (956)
Q Consensus 1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~-~~~v~~~~~--~~V~gLtev~V~ 77 (956)
|+|..+.+|||||.++.||..|.....+...|.|.|||.|||||++||||+|+... ..+++.+.. .+|.||++..|+
T Consensus 111 mmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~ 190 (1714)
T KOG0241|consen 111 MMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVT 190 (1714)
T ss_pred eeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCcceeEEeecccccccccchhhhhcc
Confidence 88999999999999999999999888899999999999999999999999996654 346666554 357799999999
Q ss_pred CHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC--CC--ceeeeeeEEeeccCCCccccCCCcchhhHh
Q 002175 78 NPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TG--ENLYSKLSLVDLAGSEGLIAEDDSGERITD 149 (956)
Q Consensus 78 S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~--~~--~~~~SkLsfVDLAGSER~~kt~s~G~rlkE 149 (956)
|++|+-.++..|.++|+++.|+ |||||+||.|.|.|.-.+ ++ ...+|+|++||||||||..++++.|.+++|
T Consensus 191 S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlke 270 (1714)
T KOG0241|consen 191 SFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKE 270 (1714)
T ss_pred cHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhh
Confidence 9999999999999999999998 899999999999987443 22 346899999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHhhc------CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcc
Q 002175 150 VLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223 (956)
Q Consensus 150 a~~INkSL~aLg~VI~aLs~------k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~ 223 (956)
+.+||+||++||.||.+|++ +.+.||||||-||+||+|.|||||+|+||+||||...+|+||++||+||.+||.
T Consensus 271 gsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkr 350 (1714)
T KOG0241|consen 271 GSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKR 350 (1714)
T ss_pred cCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999986 246899999999999999999999999999999999999999999999999999
Q ss_pred cccccCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHhhHHHHHHHHHHHHHHhhhHHHHHH
Q 002175 224 TVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQ-CVLLYNEVQKAWKVSFTLQSDLKSENY 302 (956)
Q Consensus 224 I~~~~~n~~~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q-~~~l~~Elq~~~k~~~eLE~eL~~e~~ 302 (956)
|++... +|. +.....|++|++|++.|+.+|.+.... .-.+.+.++ ++++-+++...
T Consensus 351 IvN~av----vNe------------dpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~-------esekli~ei~~ 407 (1714)
T KOG0241|consen 351 IVNHAV----VNE------------DPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLE-------ESEKLIKEITV 407 (1714)
T ss_pred hhcccc----ccC------------CchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHH-------HHHHHHHHHHh
Confidence 876433 221 134557788999999999998874322 112222222 33334444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 303 MLADKHKIEKEQNAQLRNQVAQLL 326 (956)
Q Consensus 303 ~Leek~k~~kee~~qLq~ql~~l~ 326 (956)
..++++...++.++.+++++..+-
T Consensus 408 twEEkl~ktE~in~erq~~L~~~g 431 (1714)
T KOG0241|consen 408 TWEEKLRKTEEINQERQAQLESMG 431 (1714)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666655443
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2.9e-48 Score=430.36 Aligned_cols=215 Identities=29% Similarity=0.420 Sum_probs=196.2
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCC-----CCceEeeccc--ccccceeE
Q 002175 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-----GLAKIRLQSL--ESSIELVQ 73 (956)
Q Consensus 1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~-----~~~~v~~~~~--~~V~gLte 73 (956)
|+|++.++|||||++++||+.+.. |.|+|||+|||||+|||||.+... ....++.+.. .++.|+++
T Consensus 106 m~G~~~~~Gli~r~~~~lF~~~~~-------~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~ 178 (345)
T cd01368 106 MQGSPGDGGILPRSLDVIFNSIGG-------YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTE 178 (345)
T ss_pred ecCCCCCCchHHHHHHHHHHHHHh-------eeEEEEEEEEeCCEeEeCCCCccccccCCCceEEEECCCCCEEecCCEE
Confidence 789999999999999999999864 999999999999999999988553 2345555543 35679999
Q ss_pred EEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCC--------CceeeeeeEEeeccCCCccccCC
Q 002175 74 EKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT--------GENLYSKLSLVDLAGSEGLIAED 141 (956)
Q Consensus 74 v~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~--------~~~~~SkLsfVDLAGSER~~kt~ 141 (956)
+.|.|++|++.+|..|.++|.++.|. |||||+||+|+|.+.+... .....|+|+|||||||||..+++
T Consensus 179 ~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~ 258 (345)
T cd01368 179 VEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQ 258 (345)
T ss_pred EEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEeccccccccccc
Confidence 99999999999999999999999886 9999999999999876542 34578999999999999999999
Q ss_pred CcchhhHhHHHHhhhHHHHHHHHHHhhc------CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHH
Q 002175 142 DSGERITDVLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 215 (956)
Q Consensus 142 s~G~rlkEa~~INkSL~aLg~VI~aLs~------k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTL 215 (956)
+.|.+++|+.+||+||++|++||.+|.+ +..|||||+||||+||+|+|+|||+|+||+||||+..+++||++||
T Consensus 259 ~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL 338 (345)
T cd01368 259 NTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVM 338 (345)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHH
Confidence 9999999999999999999999999987 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 002175 216 NFSSRAR 222 (956)
Q Consensus 216 rFAsrAK 222 (956)
+||++|+
T Consensus 339 ~fa~~a~ 345 (345)
T cd01368 339 KFSAIAQ 345 (345)
T ss_pred HHHHhcC
Confidence 9999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=3e-47 Score=423.42 Aligned_cols=229 Identities=32% Similarity=0.476 Sum_probs=207.0
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCC--CCCceEeeccc--ccccceeEEEe
Q 002175 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--NGLAKIRLQSL--ESSIELVQEKV 76 (956)
Q Consensus 1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~--~~~~~v~~~~~--~~V~gLtev~V 76 (956)
|+|+..++|||||++++||+.+.........|.|+|||+|||||+|||||.+.. .....+..+.. .++.|++++.|
T Consensus 106 m~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v 185 (356)
T cd01365 106 MMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAV 185 (356)
T ss_pred ecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEe
Confidence 789999999999999999999987655578999999999999999999999874 33345555443 35679999999
Q ss_pred CCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC----CCceeeeeeEEeeccCCCccccCCCcchhhH
Q 002175 77 DNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----TGENLYSKLSLVDLAGSEGLIAEDDSGERIT 148 (956)
Q Consensus 77 ~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~----~~~~~~SkLsfVDLAGSER~~kt~s~G~rlk 148 (956)
.|++|++.++..|.++|..+.|. |||||+||+|+|.+.+.. ......|+|+|||||||||..+++..|.+++
T Consensus 186 ~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~ 265 (356)
T cd01365 186 TSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLK 265 (356)
T ss_pred CCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhH
Confidence 99999999999999999998886 999999999999987654 3456789999999999999999999999999
Q ss_pred hHHHHhhhHHHHHHHHHHhhcC--------CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHH
Q 002175 149 DVLHVMKSLSALGDVLSSLTSR--------KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR 220 (956)
Q Consensus 149 Ea~~INkSL~aLg~VI~aLs~k--------~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsr 220 (956)
|+..||+||++|++||.+|..+ +.|||||+||||+||+++|||||+|+||+||+|...+++||++||+||++
T Consensus 266 E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~ 345 (356)
T cd01365 266 EGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADR 345 (356)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHH
Confidence 9999999999999999999863 48999999999999999999999999999999999999999999999999
Q ss_pred hcccccccC
Q 002175 221 ARSTVLSLG 229 (956)
Q Consensus 221 AK~I~~~~~ 229 (956)
+++|++.+.
T Consensus 346 ~~~i~~~~~ 354 (356)
T cd01365 346 AKKIVNVAV 354 (356)
T ss_pred HhhccCccc
Confidence 999887653
No 13
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.1e-46 Score=415.59 Aligned_cols=222 Identities=33% Similarity=0.466 Sum_probs=202.2
Q ss_pred CCCCCC---CCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEE
Q 002175 1 MEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEK 75 (956)
Q Consensus 1 M~Gs~~---d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~ 75 (956)
|+|+.. ++|||||++++||+.+... ++..|.|+|||+|||||+|||||.+.......+..++. .++.|++++.
T Consensus 99 m~G~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~ 176 (333)
T cd01371 99 MEGVREPPELRGIIPNSFAHIFGHIAKA--ENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERPDRGVYVKDLSMFV 176 (333)
T ss_pred ecCCCCcccccchHHHHHHHHHHHHhhc--cCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEEEcCCCCEEeCCCEEEE
Confidence 788877 9999999999999999763 44889999999999999999999987655555665544 4567999999
Q ss_pred eCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC---CCceeeeeeEEeeccCCCccccCCCcchhhH
Q 002175 76 VDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLYSKLSLVDLAGSEGLIAEDDSGERIT 148 (956)
Q Consensus 76 V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~---~~~~~~SkLsfVDLAGSER~~kt~s~G~rlk 148 (956)
|.|++|+..++..|.++|..+.|. |||||+||+|+|.+.+.. ......|+|+|||||||||..+++..|.+++
T Consensus 177 v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~ 256 (333)
T cd01371 177 VKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLK 256 (333)
T ss_pred eCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCCcccccCCchhhhH
Confidence 999999999999999999988886 999999999999998764 3445689999999999999999999999999
Q ss_pred hHHHHhhhHHHHHHHHHHhhcCCC-CcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccc
Q 002175 149 DVLHVMKSLSALGDVLSSLTSRKD-IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 224 (956)
Q Consensus 149 Ea~~INkSL~aLg~VI~aLs~k~~-~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I 224 (956)
|+..||+||.+|++||.+|.+++. |||||+||||+||+++|||||+|+||+||+|...+++||++||+||+++|+|
T Consensus 257 E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 257 EATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred hHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999998775 9999999999999999999999999999999999999999999999999875
No 14
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.9e-46 Score=411.72 Aligned_cols=222 Identities=34% Similarity=0.508 Sum_probs=204.2
Q ss_pred CCCCCC---CCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEE
Q 002175 1 MEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEK 75 (956)
Q Consensus 1 M~Gs~~---d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~ 75 (956)
|+|+.. ++|||||++++||+.+... ..+.+|.|++||+|||||+|||||++..... .+..+.. .++.|++++.
T Consensus 94 m~G~~~~~~~~Giipr~~~~Lf~~~~~~-~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l-~i~~~~~~~~~v~gl~~~~ 171 (325)
T cd01369 94 MEGPPGDPELKGIIPRIVHDIFEHISSM-DENLEFHVKVSYLEIYMEKIRDLLDVSKDNL-QVHEDKNRGVYVKGLTERF 171 (325)
T ss_pred ecCCCCccccCChHHHHHHHHHHHHhhc-cCCceEEEEEEEEEEECCChhhcccCccCCc-eEEEcCCCCEEEcCCEEEE
Confidence 678877 8999999999999999764 5567899999999999999999998865543 4444443 4567999999
Q ss_pred eCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175 76 VDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVL 151 (956)
Q Consensus 76 V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~ 151 (956)
|.|.+|++.+|..|.++|+.+.|. |||||+||+|+|.+.+...+....|+|+||||||||+..+++++|.+++|+.
T Consensus 172 v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~ 251 (325)
T cd01369 172 VSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAK 251 (325)
T ss_pred cCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCCcccccCCcchhHHHHH
Confidence 999999999999999999998886 8999999999999998888888999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhcCC-CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccc
Q 002175 152 HVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 224 (956)
Q Consensus 152 ~INkSL~aLg~VI~aLs~k~-~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I 224 (956)
.||+||.+|++||.+|.+++ .|||||+|+||+||+|+|||||+|+||+||+|...+++||++||+||+|+|+|
T Consensus 252 ~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 252 KINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999987 99999999999999999999999999999999999999999999999999875
No 15
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.8e-46 Score=411.56 Aligned_cols=220 Identities=30% Similarity=0.458 Sum_probs=201.6
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN 78 (956)
Q Consensus 1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S 78 (956)
|+|+.+++|||||++++||..+.. .++.+|.|+|||+|||||+|||||.+.... ..+..+.. .++.|++++.|.|
T Consensus 91 ~~G~~~~~Gli~r~~~~lf~~~~~--~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~-l~i~~~~~~~~~v~gl~~~~v~s 167 (321)
T cd01374 91 MSGDEQEPGIIPLAVRDIFQRIQD--TPDREFLLRVSYLEIYNEKIKDLLSPSPQE-LRIREDPNKGVVVAGLTEEIVTS 167 (321)
T ss_pred ccCCCCCCchHHHHHHHHHHHHhc--ccCceEEEEEEEEEEEcCEeEEccCCCCCC-ceEEECCCCCEEeCCceEEEeCC
Confidence 789999999999999999999975 346799999999999999999999987644 34555444 4567999999999
Q ss_pred HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCC---CceeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175 79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GENLYSKLSLVDLAGSEGLIAEDDSGERITDVL 151 (956)
Q Consensus 79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~---~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~ 151 (956)
++|++.+|..|.++|+.+.|. |||||+||+|+|.+.+... +....|+|+|||||||||..+.+ .+.+++|+.
T Consensus 168 ~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~ 246 (321)
T cd01374 168 PEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGS 246 (321)
T ss_pred HHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCC-CCccccccc
Confidence 999999999999999988876 8999999999999987655 56678999999999999999998 899999999
Q ss_pred HHhhhHHHHHHHHHHhhcCC--CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccc
Q 002175 152 HVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 224 (956)
Q Consensus 152 ~INkSL~aLg~VI~aLs~k~--~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I 224 (956)
+||+||++|++||.+|++++ .|||||+||||+||+++|||||+|+||+||||...+++||++||+||+++++|
T Consensus 247 ~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 247 FINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 99999999999999999985 99999999999999999999999999999999999999999999999999874
No 16
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.2e-46 Score=415.46 Aligned_cols=220 Identities=31% Similarity=0.403 Sum_probs=198.9
Q ss_pred CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCC--CCCceEeec----ccccccceeEEEeCCH
Q 002175 6 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--NGLAKIRLQ----SLESSIELVQEKVDNP 79 (956)
Q Consensus 6 ~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~--~~~~~v~~~----~~~~V~gLtev~V~S~ 79 (956)
+++|||||++++||+.+... +..|.|+|||+|||||+|||||++.. .....+..+ ...++.|++++.|.|+
T Consensus 115 ~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~ 191 (352)
T cd01364 115 PHAGIIPRALYQLFEKLESQ---NTEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNA 191 (352)
T ss_pred ccCCchHHHHHHHHHHHHhc---cceeEEEEEEEEeeCCeeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCH
Confidence 45899999999999999753 67899999999999999999999864 444455555 2345679999999999
Q ss_pred HHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCC---CceeeeeeEEeeccCCCccccCCCcchhhHhHHH
Q 002175 80 LEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLH 152 (956)
Q Consensus 80 eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~---~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~ 152 (956)
+|++.+|..|.++|.++.|. |||||+||+|+|.+..... .....|+|+||||||||+..+.++.+.+++|+..
T Consensus 192 ~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~ 271 (352)
T cd01364 192 NEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGN 271 (352)
T ss_pred HHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhh
Confidence 99999999999999998886 8999999999999876532 2346799999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccccc
Q 002175 153 VMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL 228 (956)
Q Consensus 153 INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~ 228 (956)
||+||++|++||.+|..++.|||||+||||+||+|+|||||+|+||+||||...+++||++||+||+++++|++.|
T Consensus 272 iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P 347 (352)
T cd01364 272 INQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKP 347 (352)
T ss_pred hhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987655
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.8e-46 Score=411.65 Aligned_cols=216 Identities=30% Similarity=0.459 Sum_probs=197.6
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN 78 (956)
Q Consensus 1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S 78 (956)
|+|+..++|||||++++||+.++.. ...|.|++||+|||||+|||||++..... .+..+.. .++.|++++.|.|
T Consensus 98 m~G~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~~~~~~l-~i~~~~~~~~~v~gl~~~~v~s 173 (319)
T cd01376 98 MLGDPNEPGLIPRTLSDLLRMGRKQ---AWTGAFSMSYYEIYNEKVYDLLEPAKKEL-PIREDKDGNILIVGLTSKPIKS 173 (319)
T ss_pred EeCCcCccchHHHHHHHHHHHHhhc---cccceEEEEEEEEECCEeeEccCCCCCCc-eEEEcCCCCEEeeCCEEEEeCC
Confidence 7899999999999999999988642 36799999999999999999999865443 4444433 4577999999999
Q ss_pred HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHh
Q 002175 79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVM 154 (956)
Q Consensus 79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~IN 154 (956)
++|+..++..|.++|..+.|. |||||+||+|+|.+.+. .....|+|+|||||||||..+++..|.+++|+.+||
T Consensus 174 ~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN 251 (319)
T cd01376 174 MAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAIN 251 (319)
T ss_pred HHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEECCCCCcccccCCccchhhhhhhhh
Confidence 999999999999999988876 99999999999998854 336789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhc
Q 002175 155 KSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222 (956)
Q Consensus 155 kSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK 222 (956)
+||++|++||.+|..+..|||||+|+||+||+|+|||||+|+||+||||...+++||++||+||+|+|
T Consensus 252 ~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 252 SSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred hhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986
No 18
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.5e-46 Score=412.94 Aligned_cols=214 Identities=30% Similarity=0.422 Sum_probs=195.6
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN 78 (956)
Q Consensus 1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S 78 (956)
|+|+.+++|||||++++||+.++... .+|.|++||+|||||+|||||++. +...+..+.. .++.|++++.|.|
T Consensus 102 m~G~~~~~Glipr~~~~lf~~~~~~~---~~~~v~~S~~EIy~e~v~DLL~~~--~~l~i~~~~~~~~~v~~l~~~~v~s 176 (322)
T cd01367 102 MLGDENQEGLYALAARDIFRLLAQPN---DDLGVTVSFFEIYGGKLFDLLNDR--KRLSVLEDGKGNVQIVGLTEKPVTS 176 (322)
T ss_pred ecCcCCcCccHHHHHHHHHHHHhccc---cccEEEEEEEeeecCchhhhccCc--cceeEEEcCCCCEEeCCCEEEEeCC
Confidence 78999999999999999999997532 689999999999999999999883 3345555544 4567999999999
Q ss_pred HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCC-CcchhhHhHHHH
Q 002175 79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAED-DSGERITDVLHV 153 (956)
Q Consensus 79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~-s~G~rlkEa~~I 153 (956)
++|++.+|+.|..+|.++.|. |||||+||+|+|.+.+. ....|+|+|||||||||..+++ ..+.+++|+.+|
T Consensus 177 ~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~I 253 (322)
T cd01367 177 VDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEI 253 (322)
T ss_pred HHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEeecCCccccccccccchhhHHhHhHH
Confidence 999999999999999999886 99999999999998765 5678999999999999998876 468999999999
Q ss_pred hhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhc
Q 002175 154 MKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222 (956)
Q Consensus 154 NkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK 222 (956)
|+||++|++||.+|++++.|||||+||||+||+|+|||||+|+||+||||+..+++||++||+||+|+|
T Consensus 254 N~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 254 NKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred hHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999985
No 19
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=4.4e-46 Score=409.20 Aligned_cols=226 Identities=40% Similarity=0.576 Sum_probs=209.3
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCC--CCCceEeeccc--ccccceeEEEe
Q 002175 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--NGLAKIRLQSL--ESSIELVQEKV 76 (956)
Q Consensus 1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~--~~~~~v~~~~~--~~V~gLtev~V 76 (956)
|+|+.+++||+||++++||+.+......+..|.|++||+|||||+|||||.+.. .....+..+.. .++.|++++.|
T Consensus 95 l~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v 174 (329)
T cd01366 95 MEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPV 174 (329)
T ss_pred ecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEECCCCCEEecCCEEEEe
Confidence 789999999999999999999987655578999999999999999999999863 44455655553 35679999999
Q ss_pred CCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHH
Q 002175 77 DNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLH 152 (956)
Q Consensus 77 ~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~ 152 (956)
.|++|+..++..|.++|..+.|. |||||+||+|+|.+.+...+....|+|+||||||||+..+.+..+.+++|+..
T Consensus 175 ~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~ 254 (329)
T cd01366 175 SSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQA 254 (329)
T ss_pred CCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCcccccccccchhhHhHhh
Confidence 99999999999999999988876 89999999999999988777888999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccc
Q 002175 153 VMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 226 (956)
Q Consensus 153 INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~ 226 (956)
||+||++|++||.+|..+..|||||+|+||+||+++|||+++|+||+||||...+++||++||+||+++++|++
T Consensus 255 in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 255 INKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred hhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999764
No 20
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=4.8e-46 Score=410.71 Aligned_cols=224 Identities=32% Similarity=0.486 Sum_probs=201.9
Q ss_pred CCCCC------CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCC--CCCceEeeccc--ccccc
Q 002175 1 MEGSS------HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--NGLAKIRLQSL--ESSIE 70 (956)
Q Consensus 1 M~Gs~------~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~--~~~~~v~~~~~--~~V~g 70 (956)
|+|+. .++|||||++++||+.+... ....+|.|+|||+|||||+|||||.+.. .....++.+.. ..+.|
T Consensus 91 m~G~~~~~~~~~~~Giipr~~~~LF~~~~~~-~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~~i~g 169 (341)
T cd01372 91 MGTAFTASEDEEEVGIIPRAIQHIFKKIDEK-KDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSKGNIIIVG 169 (341)
T ss_pred ecCCCccccccccCChHHHHHHHHHHHHHhc-cccceEEEEEEEEEeECCeeecCCCCcccCCCCceEEECCCCCEecCC
Confidence 56663 57999999999999999864 3457999999999999999999999864 44456666554 35679
Q ss_pred eeEEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccC----------CCceeeeeeEEeeccCCCc
Q 002175 71 LVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----------TGENLYSKLSLVDLAGSEG 136 (956)
Q Consensus 71 Ltev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~----------~~~~~~SkLsfVDLAGSER 136 (956)
++++.|.|++|++.+|..|.++|....|. |||||+||+|+|.+.+.. ......|+|+||||||||+
T Consensus 170 l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~ 249 (341)
T cd01372 170 LTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSER 249 (341)
T ss_pred CEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcc
Confidence 99999999999999999999999998886 999999999999998763 3446789999999999999
Q ss_pred cccCCCcchhhHhHHHHhhhHHHHHHHHHHhhcCC---CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHH
Q 002175 137 LIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 213 (956)
Q Consensus 137 ~~kt~s~G~rlkEa~~INkSL~aLg~VI~aLs~k~---~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLs 213 (956)
..++++.|.+++|+..||+||++|++||.+|..++ .|||||+||||+||+|+||||++|+||+||||...+++||++
T Consensus 250 ~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~ 329 (341)
T cd01372 250 LKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLN 329 (341)
T ss_pred cccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHH
Confidence 99999999999999999999999999999999876 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccc
Q 002175 214 SLNFSSRARSTV 225 (956)
Q Consensus 214 TLrFAsrAK~I~ 225 (956)
||+||+++|+|+
T Consensus 330 tL~~a~~~~~ik 341 (341)
T cd01372 330 TLKYANRARNIK 341 (341)
T ss_pred HHHHHHHhccCC
Confidence 999999999874
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=4.5e-46 Score=410.95 Aligned_cols=220 Identities=35% Similarity=0.419 Sum_probs=198.6
Q ss_pred CCCCC---CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCC-----CCCceEeeccc--ccccc
Q 002175 1 MEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-----NGLAKIRLQSL--ESSIE 70 (956)
Q Consensus 1 M~Gs~---~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~-----~~~~~v~~~~~--~~V~g 70 (956)
|+|+. .++|||||++++||+.++. ..+..|.|++||+|||||+|||||.+.. .+...+..+.. .++.|
T Consensus 98 m~G~~~~~~~~Glipr~~~~lf~~~~~--~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~g 175 (334)
T cd01375 98 MTGGTESYKDRGLIPRALEQVFREVAM--RATKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKG 175 (334)
T ss_pred ccCCCCcccCCchHHHHHHHHHHHHHh--ccCcceEEEEEEEEEECCEeecCCCCCccccccCCceEEEEcCCCCEEeCC
Confidence 77875 5789999999999999975 4567899999999999999999999874 23344554433 45779
Q ss_pred eeEEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeecc--CCCceeeeeeEEeeccCCCccccCCCcc
Q 002175 71 LVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL--ITGENLYSKLSLVDLAGSEGLIAEDDSG 144 (956)
Q Consensus 71 Ltev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~--~~~~~~~SkLsfVDLAGSER~~kt~s~G 144 (956)
++++.|.+++|++.++..|..+|.++.|. |||||+||+|+|.+.+. .......|+|+|||||||||..+++..+
T Consensus 176 l~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~ 255 (334)
T cd01375 176 LSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSERVSKTGVSG 255 (334)
T ss_pred cEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEEEEECCCCCccccccCch
Confidence 99999999999999999999999988876 99999999999999843 4445678999999999999999999999
Q ss_pred hhhHhHHHHhhhHHHHHHHHHHhhcCC-CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhc
Q 002175 145 ERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222 (956)
Q Consensus 145 ~rlkEa~~INkSL~aLg~VI~aLs~k~-~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK 222 (956)
..++|+.+||+||.+|++||.+|++++ .|||||+||||+||+|+|||||+|+||+||||...+++||++||+||+|++
T Consensus 256 ~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 256 QVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999988 999999999999999999999999999999999999999999999999974
No 22
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=2.1e-45 Score=403.56 Aligned_cols=224 Identities=36% Similarity=0.512 Sum_probs=202.7
Q ss_pred CCCC--CCCCChHHHHHHHHHHhhccCCCC-CceEEEEEEEEEEEcCcccccCCcCC---CCCceEeeccc---ccccce
Q 002175 1 MEGS--SHDRGLYARCFEELFDLSNSDTTA-TARFNFAVTVFELYNEQLRELLPQTG---NGLAKIRLQSL---ESSIEL 71 (956)
Q Consensus 1 M~Gs--~~d~GIIPRal~dLF~~I~~~~~~-~~~fsVsVSylEIYNE~V~DLL~~~~---~~~~~v~~~~~---~~V~gL 71 (956)
|+|+ ..++|||||++++||..+...... ...|.|+|||+|||||+|||||.+.. .....+..+.. ..+.|+
T Consensus 92 m~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~~~~g~~~i~~l 171 (335)
T PF00225_consen 92 MFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIREDSNKGSVYIKGL 171 (335)
T ss_dssp HTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEETTTEEEEETTS
T ss_pred ccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeeccccccceeecc
Confidence 6888 899999999999999999864333 47899999999999999999999973 23456666554 467799
Q ss_pred eEEEeCCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCc----eeeeeeEEeeccCCCccccCCCc
Q 002175 72 VQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE----NLYSKLSLVDLAGSEGLIAEDDS 143 (956)
Q Consensus 72 tev~V~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~----~~~SkLsfVDLAGSER~~kt~s~ 143 (956)
+++.|.|.++++.+|..|.++|+...+. |||||+||+|+|.+.+..... ...|+|+||||||||+..+.+..
T Consensus 172 ~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~ 251 (335)
T PF00225_consen 172 TEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGAS 251 (335)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSS
T ss_pred ccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeeccccccccccccc
Confidence 9999999999999999999999998887 899999999999999876654 47899999999999999998864
Q ss_pred -chhhHhHHHHhhhHHHHHHHHHHhhcC--CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHH
Q 002175 144 -GERITDVLHVMKSLSALGDVLSSLTSR--KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSR 220 (956)
Q Consensus 144 -G~rlkEa~~INkSL~aLg~VI~aLs~k--~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsr 220 (956)
+.+++|+..||+||.+|++||.+|+++ ..+||||+||||+||+|+|||||+|+||+||+|...+++||++||+||++
T Consensus 252 ~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~ 331 (335)
T PF00225_consen 252 DGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASR 331 (335)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHH
T ss_pred ccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHH
Confidence 888999999999999999999999998 89999999999999999999999999999999999999999999999999
Q ss_pred hccc
Q 002175 221 ARST 224 (956)
Q Consensus 221 AK~I 224 (956)
+|+|
T Consensus 332 ~~~I 335 (335)
T PF00225_consen 332 AREI 335 (335)
T ss_dssp HTTE
T ss_pred HcCC
Confidence 9975
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.3e-43 Score=389.89 Aligned_cols=227 Identities=35% Similarity=0.498 Sum_probs=206.1
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN 78 (956)
Q Consensus 1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S 78 (956)
|+|+.+++|||||++++||+.+... ..+..|.|+|||+|||||+|+|||.+.+.. ..+..+.. .++.|++++.|.|
T Consensus 97 l~G~~~~~Gli~~~~~~Lf~~~~~~-~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~-l~i~~~~~~~~~i~~l~~~~v~s 174 (335)
T smart00129 97 MSGTPDSPGIIPRALKDLFEKIDKL-EEGWQFQVKVSYLEIYNEKIRDLLNPSPKK-LEIREDKKGGVYVKGLTEISVSS 174 (335)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhhhc-ccCceEEEEEEEEEEECCEEEECcCCCCCC-cEEEECCCCCEEecCCEEEEeCC
Confidence 7899999999999999999999753 346789999999999999999999887544 35555543 4667999999999
Q ss_pred HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEee--ccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHH
Q 002175 79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYN--NLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLH 152 (956)
Q Consensus 79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~--~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~ 152 (956)
++|+..++..|.++|.+..|. |||||+||+|+|.+. +........|+|+||||||+|+..+.++.|.+++|+..
T Consensus 175 ~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~ 254 (335)
T smart00129 175 FEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGN 254 (335)
T ss_pred HHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCccccccChhHHHHhhch
Confidence 999999999999999988876 899999999999977 44556678899999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhc--CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccC
Q 002175 153 VMKSLSALGDVLSSLTS--RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG 229 (956)
Q Consensus 153 INkSL~aLg~VI~aLs~--k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~ 229 (956)
||+||.+|++||.+|++ +..+||||+|+||+||+++|+|+++|+||+||+|...+++||++||+||+++++|++.|.
T Consensus 255 in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~ 333 (335)
T smart00129 255 INKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAI 333 (335)
T ss_pred hhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCC
Confidence 99999999999999998 567999999999999999999999999999999999999999999999999999887654
No 24
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.6e-44 Score=426.81 Aligned_cols=229 Identities=38% Similarity=0.528 Sum_probs=213.6
Q ss_pred CCC-CCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCC-CCCceEeecc--cccccceeEEEe
Q 002175 1 MEG-SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-NGLAKIRLQS--LESSIELVQEKV 76 (956)
Q Consensus 1 M~G-s~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~-~~~~~v~~~~--~~~V~gLtev~V 76 (956)
|.| +++++|||||++++||..+..... ++.|.+.+||+|||||.|+|||.+.. .....+..+. ...|++++.+.|
T Consensus 410 M~G~~~~~~Giipral~~lF~~~~~~~~-g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V 488 (670)
T KOG0239|consen 410 MSGPTPEDPGIIPRALEKLFRTITSLKS-GWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKV 488 (670)
T ss_pred ccCCCcccCCccHHHHHHHHHHHHhhcc-CceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEec
Confidence 889 799999999999999999998765 99999999999999999999998874 4444555544 346889999999
Q ss_pred CCHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHH
Q 002175 77 DNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLH 152 (956)
Q Consensus 77 ~S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~ 152 (956)
.+.+++..+++.|..+|+++.|. |||||+||+|+|...+..++....+.|+|||||||||+++++..|.|++|+.+
T Consensus 489 ~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~ 568 (670)
T KOG0239|consen 489 GSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQN 568 (670)
T ss_pred CCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCchhhhHHHHH
Confidence 99999999999999999999998 99999999999999998899999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCc
Q 002175 153 VMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN 230 (956)
Q Consensus 153 INkSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n 230 (956)
||+||++||.||.+|+.+..||||||||||+||+++|||++||+|+|+|||...++.||+++|+||.+++.+.+.+..
T Consensus 569 INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 569 INKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred hchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998865433
No 25
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=3.3e-43 Score=385.14 Aligned_cols=222 Identities=37% Similarity=0.537 Sum_probs=202.8
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcC-CCCCceEeecc--cccccceeEEEeC
Q 002175 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQT-GNGLAKIRLQS--LESSIELVQEKVD 77 (956)
Q Consensus 1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~-~~~~~~v~~~~--~~~V~gLtev~V~ 77 (956)
|+|+.+++|||||++++||+.+.........|.|++||+|||||+|+|||.+. ......+..+. ...+.|++++.|+
T Consensus 96 l~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~ 175 (328)
T cd00106 96 MFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVG 175 (328)
T ss_pred ecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeC
Confidence 78999999999999999999998654446789999999999999999999986 22334555554 3457799999999
Q ss_pred CHHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCc--eeeeeeEEeeccCCCccccCCCcchhhHhHH
Q 002175 78 NPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE--NLYSKLSLVDLAGSEGLIAEDDSGERITDVL 151 (956)
Q Consensus 78 S~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~--~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~ 151 (956)
|++|++.++..|.++|....|. |||||+||+|+|.+.+..... ...|+|+||||||||+..+.+..+.+++|+.
T Consensus 176 s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~ 255 (328)
T cd00106 176 SAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAK 255 (328)
T ss_pred CHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCCcccccCCchhhhHhHH
Confidence 9999999999999999988876 899999999999999876655 7889999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHhhcCC--CCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhc
Q 002175 152 HVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 222 (956)
Q Consensus 152 ~INkSL~aLg~VI~aLs~k~--~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK 222 (956)
.||+||.+|++||.+|..+. .|||||+||||+||+|+|+|+++|+||+||+|...+++||++||+||+++|
T Consensus 256 ~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 256 NINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999988 999999999999999999999999999999999999999999999999985
No 26
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-42 Score=408.77 Aligned_cols=223 Identities=32% Similarity=0.429 Sum_probs=197.8
Q ss_pred CCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeecc-c--ccccceeEEEeCCHHHH
Q 002175 6 HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS-L--ESSIELVQEKVDNPLEF 82 (956)
Q Consensus 6 ~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~-~--~~V~gLtev~V~S~eE~ 82 (956)
++.|+|||++.++|..|.. .....|.|.|||+|||++.|+|||.|...... +..+. . ..+.|++++.|.+..++
T Consensus 92 ~~~Gvipr~v~~~f~~i~~--~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~-i~~~e~~g~it~~glte~tv~~~~q~ 168 (913)
T KOG0244|consen 92 DTVGVIPRAVSTLFTRIGK--TESFVFRITVSFVELYNEEVLDLLKPSRLKAN-IKLREPKGEITIRGLTEKTVRMKLQL 168 (913)
T ss_pred ccCCcCcchHHHHHHHHHh--hhccceeeeeeeeeccchhhhhhcChhhhhhc-eeccccCCceEEEeehHHHHHHHHHH
Confidence 3359999999999999986 33488999999999999999999996444332 33322 2 35679999999999999
Q ss_pred HHHHHHHHhhccCcCCC----CCcceEEEEEEEEeecc-CCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHhhhH
Q 002175 83 SKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-ITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSL 157 (956)
Q Consensus 83 l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~-~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~INkSL 157 (956)
.+.|..|...|++++|. |||||+|||+.+.+.-. ......++||+|||||||||.++++++|.+++|+.+||.+|
T Consensus 169 ~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gL 248 (913)
T KOG0244|consen 169 LSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGL 248 (913)
T ss_pred HHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccccccchhhhhhccCcchHH
Confidence 99999999999999997 99999999999998543 34445679999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCC--CcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCcc
Q 002175 158 SALGDVLSSLTSRKD--IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNR 231 (956)
Q Consensus 158 ~aLg~VI~aLs~k~~--~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n~ 231 (956)
++||+||.+|...+. |||||+||||+||+|+||||+.|+||+||||...++.||++||+||.||++|++++..+
T Consensus 249 L~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN 324 (913)
T KOG0244|consen 249 LALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVN 324 (913)
T ss_pred HHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhccccccc
Confidence 999999999998654 99999999999999999999999999999999999999999999999999998876544
No 27
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.1e-39 Score=378.48 Aligned_cols=230 Identities=31% Similarity=0.486 Sum_probs=208.9
Q ss_pred CCCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCC
Q 002175 1 MEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDN 78 (956)
Q Consensus 1 M~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S 78 (956)
|.|+.+++||||+++.+||+.+..... +..|.|.+||+|||||+++|||.+.... ..+..+.. ..+.+++++.|.+
T Consensus 107 ~~G~~~~~Gii~~~l~~lf~~l~~~~~-~~~~~v~is~lEiYnEk~~DLl~~~~~~-~~~~~~~~~~v~v~~l~~~~~~s 184 (568)
T COG5059 107 MSGTEEEPGIIPLSLKELFSKLEDLSM-TKDFAVSISYLEIYNEKIYDLLSPNEES-LNIREDSLLGVKVAGLTEKHVSS 184 (568)
T ss_pred eecCccccchHHHHHHHHHHHHHhccc-CcceeeEeehhHHHhhHHHhhccCcccc-ccccccCCCceEeecceEEecCC
Confidence 678899999999999999999986433 6789999999999999999999986654 23333333 4456999999999
Q ss_pred HHHHHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHh
Q 002175 79 PLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVM 154 (956)
Q Consensus 79 ~eE~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~IN 154 (956)
.+|++.+|..|..+|+++.|. |||||+||++++.+.+...+....++|+||||||||++..++..+.+++|+..||
T Consensus 185 ~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN 264 (568)
T COG5059 185 KEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASIN 264 (568)
T ss_pred hHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhH
Confidence 999999999999999999987 8999999999999998777766668999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhc--CCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCccc
Q 002175 155 KSLSALGDVLSSLTS--RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRD 232 (956)
Q Consensus 155 kSL~aLg~VI~aLs~--k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n~~ 232 (956)
+||.+||+||.+|.. +..|||||+|||||+|+++|||+|+|+|||||+|...++++|.+||+||.+|+.|.+.+..+.
T Consensus 265 ~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 265 KSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred hhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 999999999999997 778999999999999999999999999999999999999999999999999999988766653
No 28
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-39 Score=364.72 Aligned_cols=217 Identities=25% Similarity=0.354 Sum_probs=193.0
Q ss_pred CCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeeccc--ccccceeEEEeCCHHHHHH
Q 002175 7 DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSL--ESSIELVQEKVDNPLEFSK 84 (956)
Q Consensus 7 d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~--~~V~gLtev~V~S~eE~l~ 84 (956)
..||+..+.+|+|..+....-....+.|+|||||||+.+|||||++ +....+..+.. ..|+||.+..|.+.+|+++
T Consensus 321 s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~--k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~ 398 (676)
T KOG0246|consen 321 SKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND--KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLE 398 (676)
T ss_pred cccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc--ccceEEeecCCceEEEeeceeeeccCHHHHHH
Confidence 3599999999999999764445678999999999999999999988 33344555554 4678999999999999999
Q ss_pred HHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCC-cchhhHhHHHHhhhHHH
Q 002175 85 VLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDD-SGERITDVLHVMKSLSA 159 (956)
Q Consensus 85 lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s-~G~rlkEa~~INkSL~a 159 (956)
+|..|..-|+++.|. |||||+||+|.+...- ....+++++||||||+||-.++.. ..++..||..||+||++
T Consensus 399 lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLA 475 (676)
T KOG0246|consen 399 LIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLA 475 (676)
T ss_pred HHHhcccccccCcccCcccccccceeEeeeeecCC---cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHH
Confidence 999999999998886 9999999999997753 256789999999999999988765 44667799999999999
Q ss_pred HHHHHHHhhcCCCCcCCCCCchhhhhccccCC-CCeEEEEEeeCCCCCCHHHhHHHHHHHHHhccccccc
Q 002175 160 LGDVLSSLTSRKDIVPYENSMLTKVLADSLGE-SSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL 228 (956)
Q Consensus 160 Lg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgG-NSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~ 228 (956)
|..||.+|..++.|+|||.||||.+|+|+|=| |++||||+||||....++.||+||+||.|+|+..+..
T Consensus 476 LKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 476 LKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred HHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999988 9999999999999999999999999999999976543
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.97 E-value=1.9e-31 Score=272.05 Aligned_cols=122 Identities=37% Similarity=0.541 Sum_probs=115.6
Q ss_pred HHHHHHHHHhhccCcCCC----CCcceEEEEEEEEeeccCC---CceeeeeeEEeeccCCCccccCCCcchhhHhHHHHh
Q 002175 82 FSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVM 154 (956)
Q Consensus 82 ~l~lL~~G~~~R~~asT~----SSRSH~IFtI~V~q~~~~~---~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~IN 154 (956)
++.++..|..+|.++.|. |||||+||+|+|.+.+... +....|+|+||||||||+..+++..+.+++|+..||
T Consensus 58 ~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in 137 (186)
T cd01363 58 VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANIN 137 (186)
T ss_pred HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHh
Confidence 788999999999888876 9999999999999987655 556789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCC
Q 002175 155 KSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICP 203 (956)
Q Consensus 155 kSL~aLg~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSP 203 (956)
+||++|++||.+|.+++.+||||+||||+||+|+|||||+|+||+||||
T Consensus 138 ~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 138 KSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred hHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 9999999999999999999999999999999999999999999999998
No 30
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=99.93 E-value=8e-29 Score=293.85 Aligned_cols=595 Identities=32% Similarity=0.310 Sum_probs=402.9
Q ss_pred CCCCCCCChHHHHHHHHHHhhccCCCCCceEEEEEEEEEEEcCcccccCCcCCCCCceEeecccccccceeEEEeCCHHH
Q 002175 2 EGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLE 81 (956)
Q Consensus 2 ~Gs~~d~GIIPRal~dLF~~I~~~~~~~~~fsVsVSylEIYNE~V~DLL~~~~~~~~~v~~~~~~~V~gLtev~V~S~eE 81 (956)
+++....|++-+++..++..-.... +.. .++.|++.+.|++.........+...-......+..........
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~ 140 (670)
T KOG0239|consen 69 EGSNQPGGLLARLFKELIDLANSDK--TSN------VVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSI 140 (670)
T ss_pred hhhcCcchhHHHhhhhcccccccCC--Cch------hHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccH
Confidence 4556667888888777777654322 211 77889999999997755544333333334444566666666677
Q ss_pred HHHHHHHHHhhccCcCCCCCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHhhhHHHHH
Q 002175 82 FSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALG 161 (956)
Q Consensus 82 ~l~lL~~G~~~R~~asT~SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~INkSL~aLg 161 (956)
+..+......++......++. ... ....++|+++.+......--+....+...+-.+.....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~---------------~~~---~~~~~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~ 202 (670)
T KOG0239|consen 141 FVSLLELAQENRGLYLDLSKV---------------TPE---NSLSLLDLALKESLKLESDLGDLVTELEHVTNSISELE 202 (670)
T ss_pred HHHHHHHHhhhcccccccccc---------------chh---hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 777776666555433332222 011 11115666665543322211111111111111111111
Q ss_pred HHHHHhhcCCCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcccccccCccchhhhhhhhh
Q 002175 162 DVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIA 241 (956)
Q Consensus 162 ~VI~aLs~k~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~I~~~~~n~~~i~k~k~~~ 241 (956)
..+.. ....++.|.+.++ .|+...+.++.
T Consensus 203 ~~l~~-----------~~~~~~~l~~~~~-------------------------~~~~~~~~~~~--------------- 231 (670)
T KOG0239|consen 203 SVLKS-----------AQEERRVLADSLG-------------------------NYADLRRNIKP--------------- 231 (670)
T ss_pred HHhhh-----------hHHHHHHHHHHhh-------------------------hhhhHHHhhhh---------------
Confidence 11111 3334444444444 23333333221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 242 NDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQ 321 (956)
Q Consensus 242 ~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~q 321 (956)
..........+|..|+.++..|+..+...+.++..+..+++..++....+..++...+.++.+.+ ..++++.+|.++
T Consensus 232 --l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~ 308 (670)
T KOG0239|consen 232 --LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNE 308 (670)
T ss_pred --hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 11111223344888999999999999999998888888888888877777666666666665555 444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHH
Q 002175 322 VAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEE 401 (956)
Q Consensus 322 l~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEE 401 (956)
+.++..-....-..-.....+....+..+... .+........+.......-..-.-.+....
T Consensus 309 i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p 370 (670)
T KOG0239|consen 309 ILELKGNIRVFCRVRPLLPSEKQRLQSKVIDT------------------EEQGEVQVDSPDKGDKLEPQSFKFDKVFGP 370 (670)
T ss_pred HHHhhcCceEEEEecCCCcccccccccccccc------------------CCcceeEeecCCCCCCCccccceeeeecCC
Confidence 44332211100000000000000000000000 000000000000000000001223455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhc------cCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCccCCCCcccccC
Q 002175 402 LKKRDALIERLHEENEKLFDRLTEKA------SSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKT 475 (956)
Q Consensus 402 Lkkree~LErL~eE~ekL~qrL~eK~------Ssgsspq~~Sp~s~~s~~~q~~~~~r~~~~~~~~~~~~~p~~~~~~~~ 475 (956)
.+.+++-.++++...+...+-...++ |+|++.+|..| .+..| ++.|.+ .++.
T Consensus 371 ~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~-------------------~~~~~-Giipra--l~~l 428 (670)
T KOG0239|consen 371 LASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP-------------------TPEDP-GIIPRA--LEKL 428 (670)
T ss_pred cccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCC-------------------CcccC-CccHHH--HHHH
Confidence 77888888888899999988888774 56665555554 11222 676766 5777
Q ss_pred CCeEEEeccCccccccCCchhhHHHhhhCCCCcc-ccchhhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhhHHHHH
Q 002175 476 EGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQ-YDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFI 554 (956)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (956)
-+.+..+++|-...+++|.+||.+.++.||.|+. |.+.++|.+++|+.+|++.+++|+.|..+||.+|.++.+..+++.
T Consensus 429 F~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~ 508 (670)
T KOG0239|consen 429 FRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVA 508 (670)
T ss_pred HHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhcccccc
Confidence 8888888999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HhcCccchhhhhhhhhhhhHHHHHhhhcCccccccccCcchhhhhccCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 002175 555 RKMEPTRVMDTMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINL 634 (956)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (956)
+.+.|.+.+++|+|.+|+|.|+ ++.+.+.+.|+.+|.+.|+++| .+++|+++.++.+.|..++.++.
T Consensus 509 ~T~~Ne~SSRSH~v~~v~v~g~-------~~~t~~~~~g~l~LVDLAGSER------~~~s~~tG~RlkE~Q~INkSLS~ 575 (670)
T KOG0239|consen 509 STASNERSSRSHLVFRVRIRGI-------NELTGIRVTGVLNLVDLAGSER------VSKSGVTGERLKEAQNINKSLSA 575 (670)
T ss_pred ccccchhhhccceEEEEEEecc-------ccCcccccccceeEeecccCcc------cCcCCCchhhhHHHHHhchhhhh
Confidence 9999999999999999999999 9999999999999999998887 67788999999999999999999
Q ss_pred ccccccchhhhhhhhccccccccccccccchhhhhHHHHhhhhcchhhhhhhhccCChhhhHHHHHHHHhhccccccccc
Q 002175 635 KPEKKSKLSSVVLRMRGIDQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTG 714 (956)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (956)
.....+.+.+ .+.++...++-..||.+..|. .+....-|+++|+..++++.|+|.+++++++|+|....+.+...|+
T Consensus 576 LgdVi~AL~~--k~~HiPyRNSKLT~lLq~sLG-G~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~ 652 (670)
T KOG0239|consen 576 LGDVISALAS--KRSHIPYRNSKLTQLLQDSLG-GDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTS 652 (670)
T ss_pred hHHHHHHHhh--cCCCCcccccchHHHhHhhhC-CccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccccccccc
Confidence 9988888877 444555799999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccchhhhHHhh
Q 002175 715 DDASGGTTGQLELLSTAI 732 (956)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~ 732 (956)
++.+++..|+++..++|+
T Consensus 653 ~~~~~~~~~~~~~~~~~~ 670 (670)
T KOG0239|consen 653 DDVSLKRFGQLEKLSTAI 670 (670)
T ss_pred chhhhhhhhhhhhhhhcC
Confidence 999999999999999885
No 31
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=97.45 E-value=0.015 Score=62.75 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=33.5
Q ss_pred ChhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 002175 390 DSSAVSKKLEEELKKRDALI---ERLHEENEKLFDRLTEKASSVSSPQLSSPL 439 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~L---ErL~eE~ekL~qrL~eK~Ssgsspq~~Sp~ 439 (956)
...+..-.|+-||..++..+ ++|..|.+.|+++|.-+.--..-|...-|+
T Consensus 144 qAIErnAfLESELdEke~llesvqRLkdEardlrqelavr~kq~E~pR~~~Ps 196 (333)
T KOG1853|consen 144 QAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVRTKQTERPRIVEPS 196 (333)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcc
Confidence 34455556777777777665 788899999999998774333345544443
No 32
>PRK11637 AmiB activator; Provisional
Probab=97.25 E-value=0.12 Score=60.39 Aligned_cols=9 Identities=44% Similarity=0.165 Sum_probs=4.8
Q ss_pred ccccccCcc
Q 002175 586 LQSIMVSPV 594 (956)
Q Consensus 586 ~~~~~~~~~ 594 (956)
+++|.|.+=
T Consensus 378 ~~~~~v~~G 386 (428)
T PRK11637 378 NQSALVSVG 386 (428)
T ss_pred CCcCCCCCc
Confidence 455555543
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.79 E-value=0.037 Score=68.32 Aligned_cols=116 Identities=20% Similarity=0.245 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccc
Q 002175 307 KHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTG 386 (956)
Q Consensus 307 k~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~e 386 (956)
....++.++++|+.++..+.+..+.-+..++..++++.+.+.....+|.||.+.++......-....+.+.... ...+
T Consensus 461 eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~--~r~e 538 (697)
T PF09726_consen 461 ELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQA--TRQE 538 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchh--ccch
Confidence 34556667788888888888888888888888888888888888888888887765432210011111110001 0112
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 387 DGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLT 424 (956)
Q Consensus 387 e~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~ 424 (956)
.++......+.|+.|+++++.++....++...+..++.
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345556677777777777777777777777776663
No 34
>PRK11637 AmiB activator; Provisional
Probab=96.73 E-value=0.23 Score=57.86 Aligned_cols=8 Identities=25% Similarity=0.165 Sum_probs=3.8
Q ss_pred CccCCCCc
Q 002175 463 VDVAPLPL 470 (956)
Q Consensus 463 ~~~~p~~~ 470 (956)
.+.||.|+
T Consensus 304 ~g~~~~Pv 311 (428)
T PRK11637 304 RGQAFWPV 311 (428)
T ss_pred CCCCccCC
Confidence 34455554
No 35
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.67 E-value=0.29 Score=60.71 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCC
Q 002175 400 EELKKRDALIERLHEENEKLFDRLTEKASSVSSPQ 434 (956)
Q Consensus 400 EELkkree~LErL~eE~ekL~qrL~eK~Ssgsspq 434 (956)
.+++..+.++.....|-..|.++|.+- .+-||.
T Consensus 629 rq~ei~~~~~~~~d~ei~~lk~ki~~~--~av~p~ 661 (697)
T PF09726_consen 629 RQLEIAQGQLRKKDKEIEELKAKIAQL--LAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCc
Confidence 344444445555666777777777765 455555
No 36
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.48 E-value=0.27 Score=63.09 Aligned_cols=33 Identities=33% Similarity=0.318 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002175 393 AVSKKLEEELKKRDALIERLHEENEKLFDRLTE 425 (956)
Q Consensus 393 ~l~kkLeEELkkree~LErL~eE~ekL~qrL~e 425 (956)
....+++.++..+.+.+..+..+...+..++.+
T Consensus 462 ~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~ 494 (1164)
T TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555443
No 37
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.47 E-value=0.35 Score=52.80 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 250 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLE 329 (956)
Q Consensus 250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~e 329 (956)
....++..+...+..++.++.....+...+..++++..+.....+..+. ..--+.....+..+...++.+...+....
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~--~v~~~~e~~aL~~E~~~ak~r~~~le~el 112 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS--AVKDERELRALNIEIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444454444444444443331 11112223334444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 330 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 330 eElk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
.++...+...+.++..++..+..++..+.+...
T Consensus 113 ~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~ 145 (239)
T COG1579 113 AELMEEIEKLEKEIEDLKERLERLEKNLAEAEA 145 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555566666666655555544444
No 38
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.40 E-value=0.32 Score=62.39 Aligned_cols=10 Identities=20% Similarity=0.152 Sum_probs=5.2
Q ss_pred CHHHHHHHHH
Q 002175 78 NPLEFSKVLK 87 (956)
Q Consensus 78 S~eE~l~lL~ 87 (956)
+..++..++.
T Consensus 118 ~~~~~~~~l~ 127 (1164)
T TIGR02169 118 RLSEIHDFLA 127 (1164)
T ss_pred cHHHHHHHHH
Confidence 3455555553
No 39
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.38 E-value=1.2 Score=52.05 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=14.0
Q ss_pred ccCCCCCCCCCccCCCCcc
Q 002175 453 RNDNNNKGLPVDVAPLPLS 471 (956)
Q Consensus 453 r~~~~~~~~~~~~~p~~~~ 471 (956)
-+.++..+++.+-+|.|++
T Consensus 286 i~~t~~~~~~~G~l~~PV~ 304 (420)
T COG4942 286 ISSTGGFGALRGQLAWPVT 304 (420)
T ss_pred cccccccccccCCcCCCCC
Confidence 4455777888888888875
No 40
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.30 E-value=0.4 Score=61.30 Aligned_cols=10 Identities=20% Similarity=0.650 Sum_probs=5.9
Q ss_pred HHHhhhCCCC
Q 002175 498 LTAALNDFNP 507 (956)
Q Consensus 498 ~~~~~~~~~~ 507 (956)
|-+|+..|.|
T Consensus 977 lg~aiee~~~ 986 (1179)
T TIGR02168 977 LENKIKELGP 986 (1179)
T ss_pred HHHHHHHcCC
Confidence 4446666665
No 41
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.29 E-value=1.1 Score=48.95 Aligned_cols=152 Identities=14% Similarity=0.156 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q 002175 247 ELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIE-----KEQNAQLRNQ 321 (956)
Q Consensus 247 el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~-----kee~~qLq~q 321 (956)
+++.+...+...+..+..++.++...+.....+..+++...+....++.++...+..+..-...+ ..+...|...
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E 97 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIE 97 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 33444444445555555555555555554444445555554555555555554444333322222 2244445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHH
Q 002175 322 VAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEE 401 (956)
Q Consensus 322 l~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEE 401 (956)
+....+....+..++.+...+++.+++++..++.++..... ........++++
T Consensus 98 ~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~---------------------------~~~e~~~~~e~e 150 (239)
T COG1579 98 IQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK---------------------------NLAEAEARLEEE 150 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHH
Confidence 55555555555555555555555555555555555543333 223334455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 002175 402 LKKRDALIERLHEENEKLFDRLTE 425 (956)
Q Consensus 402 Lkkree~LErL~eE~ekL~qrL~e 425 (956)
++..++..+.+..+.+.|...|+.
T Consensus 151 ~~~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 151 VAEIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCH
Confidence 666666665555555555444443
No 42
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.13 E-value=0.18 Score=64.16 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhh
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENE-------KLFDRLTEK 426 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~e-------kL~qrL~eK 426 (956)
++......+..++++....+..++.+.+ ++++++.+.
T Consensus 546 ~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ 589 (1293)
T KOG0996|consen 546 DLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEA 589 (1293)
T ss_pred HHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555544 889999988
No 43
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.84 E-value=1.1 Score=57.58 Aligned_cols=9 Identities=33% Similarity=0.645 Sum_probs=4.5
Q ss_pred ccccccccc
Q 002175 628 QGFKINLKP 636 (956)
Q Consensus 628 ~~~~~~~~~ 636 (956)
.||.|...|
T Consensus 1071 ~~~~~~~~~ 1079 (1179)
T TIGR02168 1071 AGIEIFAQP 1079 (1179)
T ss_pred cCceEEEeC
Confidence 455555544
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.70 E-value=3.1 Score=50.37 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 395 SKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 395 ~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
...+.++|...+++++....+..-|..+|.+-
T Consensus 285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~ 316 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQASQQEAELLRKELSDA 316 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777777777665
No 45
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.68 E-value=3.2 Score=46.08 Aligned_cols=119 Identities=15% Similarity=0.137 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 243 DARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQV 322 (956)
Q Consensus 243 ~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql 322 (956)
.+..++.+++..+..|+.|..+-..+|+.+......-...++........ +..++-.+.+.-..+...++.+...+
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~----LkREnq~l~e~c~~lek~rqKlshdl 90 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSA----LKRENQSLMESCENLEKTRQKLSHDL 90 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhh----hhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence 45567777777888888877776666666544322222222221111222 22223333333333444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 002175 323 AQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSE 365 (956)
Q Consensus 323 ~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~ 365 (956)
........-+..++......|+.|+.+++.++.+++.......
T Consensus 91 q~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 91 QVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555555567788888888999999999999999987666544
No 46
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.62 E-value=0.8 Score=54.67 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=11.2
Q ss_pred hhhhccchhhHHHHHHHH
Q 002175 513 LAVISDGANKLLMLVLAA 530 (956)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~ 530 (956)
....|-|-=+.+.|.+|-
T Consensus 466 ~~~lS~Ge~~r~~la~~l 483 (562)
T PHA02562 466 YASFSQGEKARIDLALLF 483 (562)
T ss_pred hhhcChhHHHHHHHHHHH
Confidence 355677777766666543
No 47
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.62 E-value=4.2 Score=47.09 Aligned_cols=29 Identities=17% Similarity=0.407 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 398 LEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 398 LeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.++.+.+++.+++++.-+...|.+++.+-
T Consensus 250 r~e~I~~re~~lq~lEt~q~~leqeva~l 278 (499)
T COG4372 250 RAEQIRERERQLQRLETAQARLEQEVAQL 278 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665544
No 48
>PRK09039 hypothetical protein; Validated
Probab=95.56 E-value=0.99 Score=51.67 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=10.6
Q ss_pred EeeCCCCCCHHHhHHHHHHH
Q 002175 199 VNICPNAANMSETLSSLNFS 218 (956)
Q Consensus 199 v~VSPs~~~~eETLsTLrFA 218 (956)
+++.| .|=+.++||-..
T Consensus 13 ~~~wp---g~vd~~~~ll~~ 29 (343)
T PRK09039 13 VDYWP---GFVDALSTLLLV 29 (343)
T ss_pred CCCCc---hHHHHHHHHHHH
Confidence 45677 466677776544
No 49
>PRK09039 hypothetical protein; Validated
Probab=95.51 E-value=1.6 Score=49.94 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=9.3
Q ss_pred ccCCchhhH----HHhhhCC
Q 002175 490 KTTPAGEYL----TAALNDF 505 (956)
Q Consensus 490 ~~~~~~~~~----~~~~~~~ 505 (956)
..||.|... ...|.+.
T Consensus 234 ~L~~~~~~~L~~ia~~l~~~ 253 (343)
T PRK09039 234 ELNPEGQAEIAKLAAALIEL 253 (343)
T ss_pred ccCHHHHHHHHHHHHHHHHh
Confidence 457888643 3455554
No 50
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.48 E-value=2.7 Score=44.56 Aligned_cols=52 Identities=10% Similarity=0.104 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 306 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 306 ek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
...+..++++..|-..+..+......+.......++.+..|..+...|+.++
T Consensus 88 aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 88 AQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 3333344444445555555554444455555555555555555555555554
No 51
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.40 E-value=1.3 Score=56.73 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 002175 305 ADKHKIEKEQNAQLRNQVAQLLQLE-QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSE 365 (956)
Q Consensus 305 eek~k~~kee~~qLq~ql~~l~~~e-eElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~ 365 (956)
+..++..+.....+.+++..+.... +++..++.+.+.+++.|+.+++.++.++..+..+..
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~ 425 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELN 425 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555444 445566666666666666666666666655544433
No 52
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.39 E-value=2 Score=53.75 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=43.6
Q ss_pred hccchhh--------HHHHHHHHHHHhccchhHH----HHHHHhhhHHHHHH----------hcCccchhhhhhhhhhhh
Q 002175 516 ISDGANK--------LLMLVLAAVIKAGASREHE----ILAEIRDAVFAFIR----------KMEPTRVMDTMLVSRVRI 573 (956)
Q Consensus 516 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 573 (956)
++||.|- ++|=.++-+|-.|++--|- =..-+-+.+.-|+| ----.+++|-|++-+
T Consensus 645 la~~~d~s~~i~~v~~fs~~~~~~~~na~a~~~ta~~e~~d~v~~l~k~~~~~a~~~~~~l~~~~al~~~d~~~l~~--- 721 (980)
T KOG0980|consen 645 LADGDDASDLIHCVTLFSHLISTTINNAKATAYTASPEGSDRVNDLCKKCGREALAFLVSLSSENALERGDEMLLRQ--- 721 (980)
T ss_pred cCCchhhhhHhhHHHHHHHHHHHHHhcchhheeccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHH---
Confidence 5666665 6666666666555443332 22223333333322 123456777775543
Q ss_pred HHHHHhhhcCccc----cccccCcchhhhhc
Q 002175 574 LYIRSLLARSPEL----QSIMVSPVECFLEK 600 (956)
Q Consensus 574 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 600 (956)
||--+..-.||| -+|++-|++.-|++
T Consensus 722 -~lq~~~~~~eel~~~~~di~~e~l~~lld~ 751 (980)
T KOG0980|consen 722 -YLQTLNQLGEELLPKELDIDQELLGNLLDI 751 (980)
T ss_pred -HHHHHHHHhHHhccccchhhHHHHHHHHHH
Confidence 677777777777 25666666665554
No 53
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.30 E-value=4.9 Score=42.73 Aligned_cols=110 Identities=23% Similarity=0.183 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 251 REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK------SENYMLADKHKIEKEQNAQLRNQVAQ 324 (956)
Q Consensus 251 ~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~------~e~~~Leek~k~~kee~~qLq~ql~~ 324 (956)
+..--.+|..|+..|+..+....+.+..+..++....+.+..+++-+. ++...+....+..++++..|..+..+
T Consensus 13 L~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rq 92 (193)
T PF14662_consen 13 LQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQ 92 (193)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555555555555544444444444433333333332221 11112222223334444455555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 325 LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360 (956)
Q Consensus 325 l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el 360 (956)
+....+.+-.++..++.+...+..+...++.+..++
T Consensus 93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 93 LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 444444444444444444444444444444444433
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.16 E-value=1.6 Score=55.89 Aligned_cols=56 Identities=16% Similarity=0.315 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002175 309 KIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 364 (956)
Q Consensus 309 k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~ 364 (956)
....++...++..+........+++.++.+.+..+..++..+..++.++....+..
T Consensus 333 ~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 333 DAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666777777777777777777777777777666654
No 55
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.08 E-value=1.6 Score=54.70 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 002175 253 KEIQDLKQEILGLRQALKEANDQCV 277 (956)
Q Consensus 253 ~eI~~Lq~EI~~Lk~~L~~~~~q~~ 277 (956)
.++++|...+.+|++.+-.+.+-..
T Consensus 368 ~qfkqlEqqN~rLKdalVrLRDlsA 392 (1243)
T KOG0971|consen 368 YQFKQLEQQNARLKDALVRLRDLSA 392 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcch
Confidence 3455566666666655555444333
No 56
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.02 E-value=2 Score=53.82 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=9.8
Q ss_pred hhHHHhhhCCCCccccchh
Q 002175 496 EYLTAALNDFNPEQYDNLA 514 (956)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~ 514 (956)
+|||| |=||+|-..-
T Consensus 599 ~~l~A----FmPdsFlrrG 613 (1243)
T KOG0971|consen 599 SLLTA----FMPDSFLRRG 613 (1243)
T ss_pred HHHHH----hCcHhhccCC
Confidence 45555 7888886543
No 57
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.01 E-value=2.1 Score=56.18 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=11.8
Q ss_pred ceeEEEeCCHHHHHHHHHHH
Q 002175 70 ELVQEKVDNPLEFSKVLKSA 89 (956)
Q Consensus 70 gLtev~V~S~eE~l~lL~~G 89 (956)
.+..+.|.+...+..++..-
T Consensus 542 ~l~~vVV~~~~~a~~~i~~l 561 (1163)
T COG1196 542 RLQAVVVENEEVAKKAIEFL 561 (1163)
T ss_pred ccCCeeeCChHHHHHHHHHH
Confidence 46667777755555554433
No 58
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.83 E-value=9 Score=46.53 Aligned_cols=30 Identities=23% Similarity=0.178 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 397 KLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 397 kLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
-++-|-.++.++-+.|....++|++||.-.
T Consensus 428 v~qkEKEql~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 428 VAQKEKEQLQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344445555566666677777776544
No 59
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.83 E-value=5.4 Score=42.55 Aligned_cols=157 Identities=25% Similarity=0.269 Sum_probs=71.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002175 233 TIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEK 312 (956)
Q Consensus 233 ~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~k 312 (956)
.|+..+.-..++++........+.++..|+..|..-|.........+...+....+....|.. ....-..+++..+.++
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~-~k~rl~~~ek~l~~Lk 106 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQN-LKARLKELEKELKDLK 106 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344444445555555555556666666666666666655555544444443332222211111 1111122233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcc
Q 002175 313 EQNAQLRNQVAQLLQLEQEQKM---------------QIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPA 377 (956)
Q Consensus 313 ee~~qLq~ql~~l~~~eeElk~---------------qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~ 377 (956)
.+.+.|..+...+....+++.. +.--.+.++..+.+.++.-+.++.+.......
T Consensus 107 ~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nl----------- 175 (201)
T PF13851_consen 107 WEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANL----------- 175 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------
Confidence 4444444444443333333221 12223455555555555556666555544333
Q ss_pred ccccccccccccChhHHHHHHHHHHHHHHHHHH
Q 002175 378 VSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE 410 (956)
Q Consensus 378 s~s~~k~~ee~~d~s~l~kkLeEELkkree~LE 410 (956)
+......+..++++-+....+.|.
T Consensus 176 ---------dp~~~~~v~~~l~~~l~~KN~~I~ 199 (201)
T PF13851_consen 176 ---------DPAALSQVSKKLEDVLDSKNQTIK 199 (201)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111344555666666666666554
No 60
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=94.80 E-value=1.6 Score=54.13 Aligned_cols=64 Identities=22% Similarity=0.192 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCC
Q 002175 392 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPV 463 (956)
Q Consensus 392 s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK~Ssgsspq~~Sp~s~~s~~~q~~~~~r~~~~~~~~~~ 463 (956)
+....-|.-.|..+++++.||++-.+.|..-++.- ..+-+.-.++.+..+++-++-=+.+..++
T Consensus 521 ekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~l--------L~dls~D~ar~Kp~~nLTKSLLniyEkql 584 (861)
T PF15254_consen 521 EKENQILGITLRQRDAEIERLRELTRTLQNSMAKL--------LSDLSVDSARCKPGNNLTKSLLNIYEKQL 584 (861)
T ss_pred HhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhccccccccCCcchhHHHHHHHHHHhh
Confidence 33444577778888888888888777776555544 12122234445666666555544444333
No 61
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.78 E-value=1.3 Score=54.17 Aligned_cols=37 Identities=11% Similarity=0.225 Sum_probs=21.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.+....-..-..++|+++.|...-.+-+.+..+|..-
T Consensus 488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL 524 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455566666666666666666666655544
No 62
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.77 E-value=9.4 Score=43.34 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccc
Q 002175 308 HKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQR-DSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTG 386 (956)
Q Consensus 308 ~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~-e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~e 386 (956)
.+......+.|..++.++.....++...+... +..+..|+.++..|+.+........+. +..
T Consensus 101 e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~-----------------Lr~ 163 (310)
T PF09755_consen 101 EQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELER-----------------LRR 163 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------------HHH
Confidence 33344455667777777777666666666543 333556666666665433221111111 111
Q ss_pred cccChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 387 DGMDSS-AVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 387 e~~d~s-~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
+-.+.+ .+...-+.-+.++..++..|..|++.|..+|...
T Consensus 164 EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 164 EKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 111111 1111122223444556677779999999998875
No 63
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.69 E-value=2.5 Score=55.54 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=11.0
Q ss_pred hHHHHHHHhhhHHHHHHhcCc
Q 002175 539 EHEILAEIRDAVFAFIRKMEP 559 (956)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~ 559 (956)
+++=|.+-+..+...|-+|.-
T Consensus 985 ~~~dl~~a~~~l~~~i~~~d~ 1005 (1163)
T COG1196 985 QREDLEEAKEKLLEVIEELDK 1005 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555543
No 64
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.67 E-value=4.3 Score=50.73 Aligned_cols=119 Identities=24% Similarity=0.220 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHH
Q 002175 241 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSD----------LKSENYMLADKHKI 310 (956)
Q Consensus 241 ~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~e----------L~~e~~~Leek~k~ 310 (956)
..+.......+...|..|+.|+..++..+........-+........+....++.+ ++.++..+..-+..
T Consensus 22 l~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyse 101 (717)
T PF09730_consen 22 LQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSE 101 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33333444455566666666666666666655444433333222222222222222 22223333333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175 311 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 363 (956)
Q Consensus 311 ~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s 363 (956)
++++|-.|++++..+.+- +.+.+..+-+|..|++++..|..|++++..-
T Consensus 102 lEeENislQKqvs~Lk~s----QvefE~~Khei~rl~Ee~~~l~~qlee~~rL 150 (717)
T PF09730_consen 102 LEEENISLQKQVSVLKQS----QVEFEGLKHEIKRLEEEIELLNSQLEEAARL 150 (717)
T ss_pred HHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777766543 3444566677788888888888887665543
No 65
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.63 E-value=6 Score=43.57 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=4.4
Q ss_pred cccCCchh
Q 002175 489 IKTTPAGE 496 (956)
Q Consensus 489 ~~~~~~~~ 496 (956)
|-.||+..
T Consensus 239 ~pltp~aR 246 (333)
T KOG1853|consen 239 VPLTPDAR 246 (333)
T ss_pred CCCCchhh
Confidence 45566544
No 66
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.62 E-value=4.1 Score=51.05 Aligned_cols=85 Identities=16% Similarity=0.224 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHH
Q 002175 325 LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKK 404 (956)
Q Consensus 325 l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkk 404 (956)
+...+.+.+.+++..+.+++.++..++.++.+++.+....+.+... .++...-.....+...+-|++
T Consensus 630 LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~-------------~~~s~~L~~~Q~~~I~~iL~~ 696 (717)
T PF10168_consen 630 LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSP-------------KKKSIVLSESQKRTIKEILKQ 696 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------------cCCCccCCHHHHHHHHHHHHH
Confidence 4445556666777777777777777777777766544322211000 111112334445555566666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002175 405 RDALIERLHEENEKLFDR 422 (956)
Q Consensus 405 ree~LErL~eE~ekL~qr 422 (956)
.-++|.++-.+-.++...
T Consensus 697 ~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 697 QGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666666666655555544
No 67
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.61 E-value=1.9 Score=55.48 Aligned_cols=10 Identities=10% Similarity=0.046 Sum_probs=6.6
Q ss_pred EEEEEEEEee
Q 002175 105 LIIMIHIYYN 114 (956)
Q Consensus 105 ~IFtI~V~q~ 114 (956)
|.++||+...
T Consensus 160 CsV~vhFq~i 169 (1293)
T KOG0996|consen 160 CSVEVHFQKI 169 (1293)
T ss_pred eeEEEeeeee
Confidence 6677777654
No 68
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.60 E-value=5.6 Score=46.79 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 002175 244 ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK 285 (956)
Q Consensus 244 ~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~ 285 (956)
..++...++.+|+.++.++..+..++.+.......+..++..
T Consensus 57 ~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~ 98 (420)
T COG4942 57 QQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 344444555566666666666666555554444444333333
No 69
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.57 E-value=2.9 Score=53.14 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=16.7
Q ss_pred eeEEEeCCHHHHHHHHHHHHhhccC
Q 002175 71 LVQEKVDNPLEFSKVLKSAFQSRGN 95 (956)
Q Consensus 71 Ltev~V~S~eE~l~lL~~G~~~R~~ 95 (956)
+-.|.|.+..-.-.+|..|.-.|++
T Consensus 548 LynvVv~te~tgkqLLq~g~l~rRv 572 (1174)
T KOG0933|consen 548 LYNVVVDTEDTGKQLLQRGNLRRRV 572 (1174)
T ss_pred ceeEEeechHHHHHHhhccccccee
Confidence 4556677777777777777666544
No 70
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.54 E-value=7 Score=48.07 Aligned_cols=30 Identities=37% Similarity=0.565 Sum_probs=18.5
Q ss_pred ccchhhhccchhhHHHHHHHHHHHhccchhHHHHHHHhh
Q 002175 510 YDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRD 548 (956)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (956)
|--+|+|=++.+.|.-. |-..|+ +..||||
T Consensus 553 YK~La~lh~~c~~Li~~----v~~tG~-----~~rEird 582 (594)
T PF05667_consen 553 YKLLASLHENCSQLIET----VEETGT-----ISREIRD 582 (594)
T ss_pred HHHHHHHHHHHHHHHHH----HHHhhH-----HHHHHHH
Confidence 66777788888885443 444453 4556665
No 71
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.52 E-value=9.7 Score=42.34 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=20.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLF 420 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~ 420 (956)
.+......++.++......++++..|++.|.
T Consensus 259 ~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 259 EYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777777777776666666653
No 72
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.36 E-value=8.6 Score=41.04 Aligned_cols=105 Identities=11% Similarity=0.152 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 253 KEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQ 332 (956)
Q Consensus 253 ~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeEl 332 (956)
..|..|+.++..++...............+..........++.+....+..+... ...+.....++.++..+......+
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y-~kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY-EKDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777665544433333333333333333333333333333333221 122223333444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 333 KMQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 333 k~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
+-+.+..+..+..++.+...|...+.
T Consensus 106 k~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 106 KWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555554443
No 73
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.34 E-value=3.8 Score=56.02 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q 002175 891 CAQRQIADARRMVEVLQ 907 (956)
Q Consensus 891 ~~~~~~~~~~~~~~~~~ 907 (956)
||.+++.||.+-.+.++
T Consensus 1622 ~ank~~~d~~K~lkk~q 1638 (1930)
T KOG0161|consen 1622 HANKANEDAQKQLKKLQ 1638 (1930)
T ss_pred HHHHhhHHHHHHHHhhH
Confidence 56666666665554443
No 74
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.34 E-value=3.7 Score=53.24 Aligned_cols=32 Identities=38% Similarity=0.510 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 393 AVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 393 ~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
++..+++.+++-....+++...|++++ +|..+
T Consensus 667 ~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~ 698 (1317)
T KOG0612|consen 667 ALEIKLERKLKMLQNELEQENAEHHRL--RLQDK 698 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhH
Confidence 577788999999999999999999988 54444
No 75
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=94.30 E-value=5.5 Score=46.47 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 002175 340 DSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLH 413 (956)
Q Consensus 340 e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LErL~ 413 (956)
...|+.|+.++.+|+.++...+++.....++..+... ..+ +.-..++++|..++.++++....+.
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~------~~r---een~rlQrkL~~e~erRealcr~ls 316 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEV------DHR---EENERLQRKLINELERREALCRMLS 316 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457888888888888888777766553333211110 011 2345567788888887777665443
No 76
>PRK02224 chromosome segregation protein; Provisional
Probab=94.30 E-value=3.8 Score=51.92 Aligned_cols=8 Identities=0% Similarity=-0.064 Sum_probs=4.6
Q ss_pred eEEEEEEE
Q 002175 31 RFNFAVTV 38 (956)
Q Consensus 31 ~fsVsVSy 38 (956)
.+.|.+.|
T Consensus 67 ~~~v~~~f 74 (880)
T PRK02224 67 EAEIELWF 74 (880)
T ss_pred cEEEEEEE
Confidence 45666665
No 77
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.16 E-value=7.2 Score=42.30 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 393 AVSKKLEEELKKRDALIERLHEENEKLFDRLT 424 (956)
Q Consensus 393 ~l~kkLeEELkkree~LErL~eE~ekL~qrL~ 424 (956)
....+|+.++..++..|......+..+...|+
T Consensus 197 ~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 197 RRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666666655555554
No 78
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.86 E-value=5 Score=54.94 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 332 QKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 332 lk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
+...++..+.+...+......++.++.++..
T Consensus 997 l~~~l~~~eek~~~l~k~~~kle~~l~~le~ 1027 (1930)
T KOG0161|consen 997 LQDDLQAEEEKAKSLNKAKAKLEQQLDDLEV 1027 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444544444443
No 79
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.83 E-value=16 Score=42.57 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHhhcC------CCCcCCCCCchhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHH
Q 002175 155 KSLSALGDVLSSLTSR------KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSS 219 (956)
Q Consensus 155 kSL~aLg~VI~aLs~k------~~~VPYRdSKLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAs 219 (956)
.+...||-||..+.+. +.+. +||. -..-.|.+|++|-..----.-||..|-..+
T Consensus 7 ~~vlvLgGVIA~~gD~ig~kvGkarL--------rlF~---LRPkqTAvlvtvltG~liSA~tLailf~~~ 66 (499)
T COG4372 7 PFVLVLGGVIAYAGDTIGKKVGKARL--------RLFG---LRPKQTAVLVTVLTGMLISAATLAILFLLN 66 (499)
T ss_pred HHHHHHHhHHHHHhhHHHhhhhHHHH--------hHhc---cCcccceeehhhhhcchhhHHHHHHHHHhh
Confidence 3567889999888762 1121 1110 113467777777554333445555554443
No 80
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.78 E-value=4.1 Score=54.87 Aligned_cols=41 Identities=10% Similarity=0.008 Sum_probs=27.1
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002175 388 GMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKAS 428 (956)
Q Consensus 388 ~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK~S 428 (956)
..........++.++..++.++..+....+.+........+
T Consensus 444 LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~ 484 (1486)
T PRK04863 444 LEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRK 484 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566667777777777777777777777666666533
No 81
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.77 E-value=7.3 Score=46.64 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 319 RNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 319 q~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
..++..+......+...+...+..+..++.++..++..+.....
T Consensus 233 ~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~~~ 276 (562)
T PHA02562 233 KAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQK 276 (562)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444444444443
No 82
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.75 E-value=2.4 Score=51.25 Aligned_cols=15 Identities=27% Similarity=0.445 Sum_probs=8.8
Q ss_pred CCchhh---hhccccCCC
Q 002175 178 NSMLTK---VLADSLGES 192 (956)
Q Consensus 178 dSKLTr---LLqDsLgGN 192 (956)
+++|+. +|++.+|+.
T Consensus 65 N~~L~~di~~lr~~~~~~ 82 (546)
T KOG0977|consen 65 NRKLEHDINLLRGVVGRE 82 (546)
T ss_pred HHHHHHHHHHHHhhccCC
Confidence 344543 567777765
No 83
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=93.73 E-value=8 Score=38.41 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=31.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTE 425 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~e 425 (956)
.|......++.++...+..++.|...|.=|.+.|..
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477888899999999999999999999988888765
No 84
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=12 Score=45.27 Aligned_cols=120 Identities=20% Similarity=0.222 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHH
Q 002175 239 DIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQ----------SDLKSENYMLADKH 308 (956)
Q Consensus 239 ~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE----------~eL~~e~~~Leek~ 308 (956)
.+.++.......+...|-+|+.|+.++++.+......+..+....+........++ .+.+.++..+-..+
T Consensus 93 sLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseY 172 (772)
T KOG0999|consen 93 SLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEY 172 (772)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444556667777777777777776665544433333222221111111 11222333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 309 KIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 309 k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
..++++|--|++++..+.+- +.+.+...-+|..|++++.-|..++++...
T Consensus 173 SELEEENIsLQKqVs~LR~s----QVEyEglkheikRleEe~elln~q~ee~~~ 222 (772)
T KOG0999|consen 173 SELEEENISLQKQVSNLRQS----QVEYEGLKHEIKRLEEETELLNSQLEEAIR 222 (772)
T ss_pred HHHHHhcchHHHHHHHHhhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777777666543 233444556677777777777777765544
No 85
>PRK02224 chromosome segregation protein; Provisional
Probab=93.71 E-value=7.5 Score=49.34 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=13.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLF 420 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~ 420 (956)
+.......+++++....+.+..+......+.
T Consensus 409 ~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~ 439 (880)
T PRK02224 409 NAEDFLEELREERDELREREAELEATLRTAR 439 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555544444444333333
No 86
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.66 E-value=6.3 Score=39.92 Aligned_cols=48 Identities=13% Similarity=0.237 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 312 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 359 (956)
Q Consensus 312 kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~e 359 (956)
.++.......+........+......+++.++..|+.+...++.++.+
T Consensus 86 Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 86 EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333333333333333333333334444444444444444444433
No 87
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.62 E-value=7.3 Score=47.28 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHH
Q 002175 243 DARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK---SENYMLADKHKIEKEQNAQLR 319 (956)
Q Consensus 243 ~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~---~e~~~Leek~k~~kee~~qLq 319 (956)
+..+....++.+|..|+.|+..++..+...........++..........++.+++ .....+++..+.++.++.+|.
T Consensus 103 e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 103 ETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLR 182 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33333344455555666666666655555544443333333333333334443332 222233344444444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 320 NQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 354 (956)
Q Consensus 320 ~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE 354 (956)
..+..+....+.-..--.+.+..++.|.+++.-++
T Consensus 183 ~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 183 EELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55444443332211112233444444444444444
No 88
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.57 E-value=2.8 Score=47.48 Aligned_cols=51 Identities=12% Similarity=0.179 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 311 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 361 (956)
Q Consensus 311 ~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~ 361 (956)
++.+...+..++........+++.+++..+..++.+..+..+++.++.++.
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444445555555555555555544433
No 89
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=93.47 E-value=7.2 Score=48.55 Aligned_cols=40 Identities=28% Similarity=0.189 Sum_probs=31.0
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 387 DGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 387 e~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.+.+..........++.+......++.+|+++|...|..-
T Consensus 581 ~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 581 KLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666777778888888889999999999888776
No 90
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.37 E-value=5.5 Score=50.81 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=24.2
Q ss_pred hhcHHHHHHHHHHHHhhccccchhhhhHhHHHhhHHHHHhhCccccccCchhH
Q 002175 840 LISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCA 892 (956)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (956)
+..|+.+++--+.+. |++.+..+.-+-+...+...-.+ +.+|--|.|-+
T Consensus 881 ~vtl~rf~nEsnr~~---s~h~~ls~qn~eLs~~~~~~sdq-~~~l~kd~p~~ 929 (1195)
T KOG4643|consen 881 LVTLNRFLNESNRNL---SQHEILSTQNKELSQRALHDSDQ-YHLLGKDFPDQ 929 (1195)
T ss_pred HHHHHHHHHHhhccc---hhhhhhhhhhHHHHHHHHhcccc-hhhhCCCCchH
Confidence 445666666544433 35555555444444444333222 34556666654
No 91
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.33 E-value=16 Score=40.74 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002175 242 NDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEK 312 (956)
Q Consensus 242 ~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~k 312 (956)
.....+....+.+|..|..++..+..++.....+......++....+.+..+.+++.+++..+.+..+.++
T Consensus 41 ~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 41 SELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555556666666666666665555555556666666666666677777766666666555543
No 92
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.31 E-value=6 Score=49.25 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 391 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 391 ~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
......+|..+|++.++.+.+|--|...|..+|..+
T Consensus 484 ~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~ 519 (1118)
T KOG1029|consen 484 MISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK 519 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 344556777778888888888888888888888777
No 93
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.29 E-value=6.5 Score=49.69 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=22.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTE 425 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~e 425 (956)
....-..+...+|+.+.-.++...+++.+|...|..
T Consensus 504 ~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k 539 (775)
T PF10174_consen 504 KLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK 539 (775)
T ss_pred HHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333334455666666666777777777777766654
No 94
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.22 E-value=1.7 Score=52.40 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 321 QVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 321 ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
....+....+.++.++.+.+.+++.++.++..|+.++.
T Consensus 288 k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 288 KKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444556666666666666666666666664
No 95
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.21 E-value=1.9 Score=50.82 Aligned_cols=114 Identities=21% Similarity=0.204 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccc
Q 002175 306 DKHKIEKEQNAQLRNQVAQLLQLEQ-------EQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAV 378 (956)
Q Consensus 306 ek~k~~kee~~qLq~ql~~l~~~ee-------Elk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s 378 (956)
++.+.++....+++..+..+.+..+ .++.++...+++|+.|+..+..|..|+...--+.+...- ..
T Consensus 302 ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~-------mn 374 (622)
T COG5185 302 EKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFEL-------MN 374 (622)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHH-------HH
Confidence 3334444444444444444444333 356666667777777777777777766432221111000 00
Q ss_pred cccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 379 SSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 379 ~s~~k~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
+.-.++..+++.......+|...+..++-+++...++.+++++.+..-
T Consensus 375 ~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl 422 (622)
T COG5185 375 QEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSL 422 (622)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 001122233333444455666666666666666666666666555443
No 96
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.21 E-value=11 Score=45.44 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=20.4
Q ss_pred hhhhhhhcc--CChhhh-HHHHHHHHhhcccccccccCCCCCCcccc
Q 002175 681 KALAALFVH--TPAGEL-QRQIRSWLAENFEFLSVTGDDASGGTTGQ 724 (956)
Q Consensus 681 ~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (956)
.-||-||-| +-.||+ -|-|-.++.|.--| .|..+|..++
T Consensus 492 deLaqlyh~vc~~n~etp~rvmlD~~~e~~~~-----~ds~~~~~s~ 533 (772)
T KOG0999|consen 492 DELAQLYHHVCECNNETPNRVMLDYYRETDLR-----NDSPTGIQSP 533 (772)
T ss_pred HHHHHHHHHHHHHcCCCCchhhhhhhcccccc-----CCCcccccCc
Confidence 346666544 112221 14455555554433 7788887776
No 97
>PRK03918 chromosome segregation protein; Provisional
Probab=93.13 E-value=11 Score=47.75 Aligned_cols=10 Identities=40% Similarity=0.421 Sum_probs=4.2
Q ss_pred ceeecccCCC
Q 002175 914 ALLTLEEGGS 923 (956)
Q Consensus 914 ~~~~~~~~~~ 923 (956)
..+.+..|+|
T Consensus 864 ~~l~~~~~~s 873 (880)
T PRK03918 864 IRVSLEGGVS 873 (880)
T ss_pred EEEEecCCee
Confidence 3344444444
No 98
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.02 E-value=8.6 Score=43.64 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 397 KLEEELKKRDALIERLHEENEKLF 420 (956)
Q Consensus 397 kLeEELkkree~LErL~eE~ekL~ 420 (956)
.+++....+...+...++|.+.++
T Consensus 280 elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 280 ELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555555555555554
No 99
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.96 E-value=14 Score=45.55 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=23.0
Q ss_pred CchhhHHHhhhCCC-CccccchhhhccchhhHHHHHHHH
Q 002175 493 PAGEYLTAALNDFN-PEQYDNLAVISDGANKLLMLVLAA 530 (956)
Q Consensus 493 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 530 (956)
--|-||-++--|-. -+|||.+----||-=--||+=++-
T Consensus 839 ~~~~hl~~~~~nttt~eh~eall~QreGElthlq~e~~~ 877 (961)
T KOG4673|consen 839 MSPYHLKSITPNTTTSEHYEALLRQREGELTHLQTELAS 877 (961)
T ss_pred cchhHHhhhcCCCchHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34666665543322 357887776677776667776544
No 100
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.95 E-value=3.8 Score=46.49 Aligned_cols=72 Identities=19% Similarity=0.360 Sum_probs=38.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175 292 TLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 363 (956)
Q Consensus 292 eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s 363 (956)
.|+.++...+....+....-..+...++..+.......+..+..+.+.+.+++.++.+++.+..+..+++..
T Consensus 188 ~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 188 ELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334333333333333334555666666666666655666666666666666666666666655544443
No 101
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.89 E-value=10 Score=48.58 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHHH
Q 002175 332 QKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIER 411 (956)
Q Consensus 332 lk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LEr 411 (956)
++.+.++.+.++..++..+..++.++..++.+... +...........++++++++.+++.+..
T Consensus 820 l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~-----------------l~~kv~~~~~~~~~~~~el~~~k~k~~~ 882 (1174)
T KOG0933|consen 820 LQLEHEELEKEISSLKQQLEQLEKQISSLKSELGN-----------------LEAKVDKVEKDVKKAQAELKDQKAKQRD 882 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhHHhHHHHHHHHHHHHHHHHHh
Confidence 44444444555555555555555555444443333 3333344555566677777777776655
Q ss_pred HHHHHHHH
Q 002175 412 LHEENEKL 419 (956)
Q Consensus 412 L~eE~ekL 419 (956)
...+...+
T Consensus 883 ~dt~i~~~ 890 (1174)
T KOG0933|consen 883 IDTEISGL 890 (1174)
T ss_pred hhHHHhhh
Confidence 55544333
No 102
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.80 E-value=6.6 Score=44.52 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 247 ELYEREKEIQDLKQEILGLRQALK 270 (956)
Q Consensus 247 el~~~~~eI~~Lq~EI~~Lk~~L~ 270 (956)
++..++.+-..|+.|...|+....
T Consensus 168 Klk~LEeEN~~LR~Ea~~L~~et~ 191 (306)
T PF04849_consen 168 KLKSLEEENEQLRSEASQLKTETD 191 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHh
Confidence 333444444444544444443333
No 103
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.79 E-value=8.2 Score=44.05 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHHHH
Q 002175 244 ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKI---EKEQNAQLRN 320 (956)
Q Consensus 244 ~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~---~kee~~qLq~ 320 (956)
.+..+++.+.+.++|+...++|..+|-...+-......+.+........+.++....+..+.+.... .+++.+.|..
T Consensus 90 i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr 169 (401)
T PF06785_consen 90 IRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNR 169 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Confidence 3445556667777788888888777766654333333333333333333333333333333222222 2233344444
Q ss_pred HHHHHHHHH----HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175 321 QVAQLLQLE----QE-------QKMQIQQRDSTIKTLQAKINSIESQRNEALHS 363 (956)
Q Consensus 321 ql~~l~~~e----eE-------lk~qlqe~e~eIe~LqeEik~LE~qL~el~~s 363 (956)
.+.+..... ++ ....+..++..|..|+.+++.|--++..++.-
T Consensus 170 ELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQl 223 (401)
T PF06785_consen 170 ELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQL 223 (401)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 443333332 22 33445556666777777777766666665553
No 104
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.78 E-value=8.5 Score=47.60 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 312 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 312 kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
++++..|+...-.+.....+++..++..+.....|..++..++.++..++.
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e 216 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKE 216 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333433333333333344444444444444555555555555544443
No 105
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.72 E-value=17 Score=46.21 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 397 KLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 397 kLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
...+++...+.+++++..+.+.|...|.++
T Consensus 462 e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk 491 (775)
T PF10174_consen 462 ERQEELETYQKELKELKAKLESLQKELSEK 491 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 345666677777778888888888888888
No 106
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.64 E-value=3.3 Score=51.90 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=15.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHH
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHE 414 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~e 414 (956)
.+.+..++.-++|+....+++.++.
T Consensus 689 ~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 689 TIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666554
No 107
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.60 E-value=8 Score=48.84 Aligned_cols=52 Identities=13% Similarity=0.293 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175 312 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 363 (956)
Q Consensus 312 kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s 363 (956)
++++.+|..++.++.........+.+...+..+.++.++..+..+++.+...
T Consensus 465 ~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 465 EEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444555555555566666666655555555544
No 108
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.58 E-value=16 Score=38.85 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 401 ELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 401 ELkkree~LErL~eE~ekL~qrL~eK 426 (956)
........+..++.|.+.|.+.|.+|
T Consensus 165 K~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 165 KHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556778888888888888887
No 109
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.57 E-value=16 Score=41.82 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 392 SAVSKKLEEELKKRDALIERLHEENEKLFDRLT 424 (956)
Q Consensus 392 s~l~kkLeEELkkree~LErL~eE~ekL~qrL~ 424 (956)
-++.++.+..|.+++.+.+.|.-|.+.|.|-=.
T Consensus 193 ~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 193 HSMLDKRQAYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346678889999999999999999999988644
No 110
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.55 E-value=9.1 Score=51.15 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=18.7
Q ss_pred hHHHHHHHhhhHHHHHHhcCccchhhhh
Q 002175 539 EHEILAEIRDAVFAFIRKMEPTRVMDTM 566 (956)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (956)
.++=+.||-.-+-.+.++.=+..+.|+.
T Consensus 1135 ~~~~~~~~n~~~~~~w~~~~~~~~~~~i 1162 (1311)
T TIGR00606 1135 HSMKMEEINKIIRDLWRSTYRGQDIEYI 1162 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccHHHHh
Confidence 4455677777777777776666666654
No 111
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.50 E-value=5.4 Score=53.21 Aligned_cols=30 Identities=10% Similarity=0.252 Sum_probs=17.7
Q ss_pred hCccccccCchhHHHHHHHHHHHHHHHHhh
Q 002175 880 RMPSLLDIDHPCAQRQIADARRMVEVLQQM 909 (956)
Q Consensus 880 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (956)
.-|.+|-+|-|.+.--......+.+.|-.+
T Consensus 1222 ~~~~il~lDEPt~~lD~~~~~~l~~~l~~~ 1251 (1311)
T TIGR00606 1222 LNCGIIALDEPTTNLDRENIESLAHALVEI 1251 (1311)
T ss_pred cCCCEEEeeCCcccCCHHHHHHHHHHHHHH
Confidence 446677777777665555555555554443
No 112
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=92.48 E-value=8.9 Score=43.49 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHH
Q 002175 255 IQDLKQEILGLRQALKEANDQCVLLYNE 282 (956)
Q Consensus 255 I~~Lq~EI~~Lk~~L~~~~~q~~~l~~E 282 (956)
+..|+.++.++.+.++...-.+..+.++
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNe 106 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNE 106 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchH
Confidence 3455666666666666655544444443
No 113
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.43 E-value=14 Score=37.57 Aligned_cols=45 Identities=7% Similarity=0.093 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 315 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 359 (956)
Q Consensus 315 ~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~e 359 (956)
+.....++.+.....+++..++...+......+.++..+..++.+
T Consensus 96 L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 96 LKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 333333334333444444444444555555555555555554443
No 114
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.43 E-value=28 Score=42.76 Aligned_cols=32 Identities=22% Similarity=0.081 Sum_probs=22.9
Q ss_pred cccccccchhhhhHHHHhhhhcchhhhhhhhc
Q 002175 657 WRHQVTGGKLREIQEEAKSFATGNKALAALFV 688 (956)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (956)
.+.|-++|-+--++----.|-+|||+.+.+|.
T Consensus 569 ~~k~~~l~~~~~~~~s~~r~~l~nk~~r~~~~ 600 (629)
T KOG0963|consen 569 ERKYKRLGSFERITLSLGRTLLFNKMTRTLFF 600 (629)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666778999999998774
No 115
>PRK03918 chromosome segregation protein; Provisional
Probab=92.39 E-value=27 Score=44.28 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=21.5
Q ss_pred CccccccCchhHHHHHHHHHHHHHHHHhhc
Q 002175 881 MPSLLDIDHPCAQRQIADARRMVEVLQQMR 910 (956)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (956)
=|.++=+|-|.+.=-......+++.|..+.
T Consensus 812 ~~~~lilDEp~~~lD~~~~~~l~~~l~~~~ 841 (880)
T PRK03918 812 NIPLLILDEPTPFLDEERRRKLVDIMERYL 841 (880)
T ss_pred CCCeEEEeCCCcccCHHHHHHHHHHHHHHH
Confidence 367777888887766666677777776654
No 116
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=92.37 E-value=12 Score=49.26 Aligned_cols=44 Identities=18% Similarity=0.033 Sum_probs=27.1
Q ss_pred hHHHHH--HHHhhcccccccccC----CCCCCcccchhhhHHhhhhhhhc
Q 002175 695 LQRQIR--SWLAENFEFLSVTGD----DASGGTTGQLELLSTAIMDGWMA 738 (956)
Q Consensus 695 ~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 738 (956)
++|+++ .|+-==+-|++++++ ....++-|++=.+-..++=.|+.
T Consensus 598 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~lgr~~~i~~~~~l~~~~ 647 (1109)
T PRK10929 598 AMRYYLLSIGLIVPLIMALITFDNLNDREFSGTLGRLCFILLCGALSLVT 647 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHHHHHHHH
Confidence 344444 255433444555554 55677889998888877776664
No 117
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.35 E-value=22 Score=44.92 Aligned_cols=32 Identities=13% Similarity=0.358 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002175 335 QIQQRDSTIKTLQAKINSIESQRNEALHSSEV 366 (956)
Q Consensus 335 qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~ 366 (956)
++.+......+++.++..++.+++++....+.
T Consensus 800 ~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa 831 (970)
T KOG0946|consen 800 NLSEESTRLQELQSELTQLKEQIQTLLERTSA 831 (970)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35556666777888888888888776665443
No 118
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=92.26 E-value=22 Score=40.31 Aligned_cols=72 Identities=10% Similarity=0.074 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHH
Q 002175 334 MQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRS-TIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALI 409 (956)
Q Consensus 334 ~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs-~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~L 409 (956)
.-+..++.++++|+++.+-|+.+|...+.....-. ....++-..... +. ....|.+.-+.|+.|...+.++|
T Consensus 59 NavrdYqrq~~elneEkrtLeRELARaKV~aNRVA~vvANEWKD~nDk-vM---PVKqWLEERR~lQgEmQ~LrDKL 131 (351)
T PF07058_consen 59 NAVRDYQRQVQELNEEKRTLERELARAKVSANRVATVVANEWKDENDK-VM---PVKQWLEERRFLQGEMQQLRDKL 131 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCc-cc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777766655433210 111122111111 01 12356666677777777776666
No 119
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=92.20 E-value=8.4 Score=48.14 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=7.7
Q ss_pred HHHHHHhhccc
Q 002175 698 QIRSWLAENFE 708 (956)
Q Consensus 698 ~~~~~~~~~~~ 708 (956)
.+-+||||.=.
T Consensus 688 ~Le~~laekR~ 698 (1265)
T KOG0976|consen 688 HLEGWLAEKRN 698 (1265)
T ss_pred HHHHHHhhhhh
Confidence 36789888554
No 120
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=92.18 E-value=24 Score=43.81 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 002175 246 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKA 286 (956)
Q Consensus 246 ~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~ 286 (956)
++......+|..|......|+..+............++...
T Consensus 527 ~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~k 567 (786)
T PF05483_consen 527 KQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCK 567 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666666666666665555544444444433
No 121
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=92.12 E-value=18 Score=41.15 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHH
Q 002175 241 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEV 283 (956)
Q Consensus 241 ~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~El 283 (956)
..+....+++....-..+..++..|+..+....++........
T Consensus 116 L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~ 158 (309)
T PF09728_consen 116 LKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHF 158 (309)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445566677777777776666655433333
No 122
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.06 E-value=20 Score=40.84 Aligned_cols=54 Identities=24% Similarity=0.331 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 002175 250 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYM 303 (956)
Q Consensus 250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~ 303 (956)
.+...+..|+.+...|+.++......+..+..+..........++.....+...
T Consensus 24 ~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~ 77 (310)
T PF09755_consen 24 QLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEF 77 (310)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667778888888888888777777777777777766666666555544443
No 123
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=91.87 E-value=14 Score=41.00 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=31.4
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 388 GMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 388 ~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.+...+..--|+++|+..+..|+++...++.+.+.+..+
T Consensus 273 VEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~ 311 (330)
T KOG2991|consen 273 VEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDK 311 (330)
T ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444556788999999999999999999999988776
No 124
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.85 E-value=6.9 Score=38.77 Aligned_cols=95 Identities=17% Similarity=0.244 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 250 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLE 329 (956)
Q Consensus 250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~e 329 (956)
.+...|+.+..|+..++.++.....+...+.+++-+.......+ .....+...|+.++..+....
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~---------------~~~~~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL---------------RALKKEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544444433444433332222221 222334445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 330 QEQKMQIQQRDSTIKTLQAKINSIESQRNE 359 (956)
Q Consensus 330 eElk~qlqe~e~eIe~LqeEik~LE~qL~e 359 (956)
+..-.-+-++..++++|+..+..++.-+..
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666666666666655543
No 125
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.72 E-value=15 Score=41.78 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175 309 KIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 363 (956)
Q Consensus 309 k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s 363 (956)
+..++....+..++.......++++.+++..+..|+...++..+++.++.++...
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555555566666666666666666666666555553
No 126
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=91.70 E-value=16 Score=39.76 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 002175 253 KEIQDLKQEILGL 265 (956)
Q Consensus 253 ~eI~~Lq~EI~~L 265 (956)
.++..|...+..+
T Consensus 36 ~e~~~l~rri~~l 48 (237)
T PF00261_consen 36 AEVASLQRRIQLL 48 (237)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 127
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.68 E-value=25 Score=48.10 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccc
Q 002175 303 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVL 382 (956)
Q Consensus 303 ~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~ 382 (956)
-.......+....+.++..+..+.....+++.++......+..|+.+...++.+.+.+........
T Consensus 1240 ~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d-------------- 1305 (1822)
T KOG4674|consen 1240 ANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSD-------------- 1305 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------------
Confidence 334444455555566666666666666666666666666667777777777766666665543310
Q ss_pred cccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 383 RTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLF 420 (956)
Q Consensus 383 k~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~ 420 (956)
..+.....+...+|++++...+.+++.+..+..++.
T Consensus 1306 --~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1306 --KNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122233555666777777777776666666666
No 128
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=91.49 E-value=26 Score=45.17 Aligned_cols=29 Identities=34% Similarity=0.335 Sum_probs=16.1
Q ss_pred chhhhHH--hhhhhhh-------ccCCCCCCCCchhhh
Q 002175 724 QLELLST--AIMDGWM-------AGLGGAVPPSTDALG 752 (956)
Q Consensus 724 ~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~ 752 (956)
+.+.+|| -.++|.| +-+|.+-||.+-||-
T Consensus 897 ~h~~ls~qn~eLs~~~~~~sdq~~~l~kd~p~~cgal~ 934 (1195)
T KOG4643|consen 897 QHEILSTQNKELSQRALHDSDQYHLLGKDFPDQCGALR 934 (1195)
T ss_pred hhhhhhhhhHHHHHHHHhcccchhhhCCCCchHHHhhh
Confidence 5555554 2455554 346677777655553
No 129
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.42 E-value=32 Score=42.78 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 002175 404 KRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 404 kree~LErL~eE~ekL~qrL~eK 426 (956)
++..++.++..+...+...|..|
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555556666666676666
No 130
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=91.42 E-value=23 Score=43.48 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 251 REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQ 330 (956)
Q Consensus 251 ~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~ee 330 (956)
...++++|+.++..+..++.....+.....+..++..+....+...++..-...+ +.--+.+.++...+...+.
T Consensus 119 ~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e------~~~~q~~~e~e~~L~~~~~ 192 (629)
T KOG0963|consen 119 ASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETE------EKLEQEWAEREAGLKDEEQ 192 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777666555544444433333322222222221111111 1112234444455555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHH
Q 002175 331 EQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE 410 (956)
Q Consensus 331 Elk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LE 410 (956)
.++.++...+++|..++..+.....++-.+....+. ++..-.+...-...+++.-+..+.
T Consensus 193 ~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~de--------------------e~~~k~aev~lim~eLe~aq~ri~ 252 (629)
T KOG0963|consen 193 NLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDE--------------------EVAAKAAEVSLIMTELEDAQQRIV 252 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh--------------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777877777777777777655554332 122223334456677888888999
Q ss_pred HHHHHHHHHHHHhhhh
Q 002175 411 RLHEENEKLFDRLTEK 426 (956)
Q Consensus 411 rL~eE~ekL~qrL~eK 426 (956)
.+.+|++.|+..+..-
T Consensus 253 ~lE~e~e~L~~ql~~~ 268 (629)
T KOG0963|consen 253 FLEREVEQLREQLAKA 268 (629)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998766
No 131
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=91.35 E-value=28 Score=39.82 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 002175 243 DARKELYEREKEIQDLKQEILGLRQALKEANDQCVLL 279 (956)
Q Consensus 243 ~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l 279 (956)
+..+.+.+-......|++++..|.+.+..+..+....
T Consensus 120 diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~r 156 (391)
T KOG1850|consen 120 DIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEER 156 (391)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444455555555555555554444433
No 132
>PRK11281 hypothetical protein; Provisional
Probab=91.06 E-value=13 Score=48.99 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 391 SSAVSKKLEEELKKRDALIERLHEENEKL 419 (956)
Q Consensus 391 ~s~l~kkLeEELkkree~LErL~eE~ekL 419 (956)
..+...+|-+++.+.-+++.++..++.+.
T Consensus 283 ~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~ 311 (1113)
T PRK11281 283 ELEINLQLSQRLLKATEKLNTLTQQNLRV 311 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666665555555443
No 133
>PRK04863 mukB cell division protein MukB; Provisional
Probab=91.03 E-value=6.1 Score=53.31 Aligned_cols=34 Identities=3% Similarity=-0.021 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 391 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLT 424 (956)
Q Consensus 391 ~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~ 424 (956)
.........+.+.....++..+..+...+...+.
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~le 473 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHS 473 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555544443
No 134
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.99 E-value=16 Score=41.65 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 314 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 314 e~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
++...+.++.++.....++...++....++..++.+|.+++..+
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444433
No 135
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=90.95 E-value=16 Score=45.85 Aligned_cols=11 Identities=27% Similarity=0.461 Sum_probs=6.7
Q ss_pred eeeeeEEeecc
Q 002175 122 LYSKLSLVDLA 132 (956)
Q Consensus 122 ~~SkLsfVDLA 132 (956)
..|..+++||-
T Consensus 22 yssp~qvidln 32 (1265)
T KOG0976|consen 22 YSSPFQVIDLN 32 (1265)
T ss_pred cCCCceeeecc
Confidence 34566777764
No 136
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.93 E-value=9.6 Score=45.06 Aligned_cols=14 Identities=0% Similarity=-0.233 Sum_probs=9.4
Q ss_pred cCCCCCchhhhhcc
Q 002175 174 VPYENSMLTKVLAD 187 (956)
Q Consensus 174 VPYRdSKLTrLLqD 187 (956)
.+|-.++++|..+.
T Consensus 209 w~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 209 WWDSSCPVCRYCQS 222 (493)
T ss_pred cccCcChhhhhhcC
Confidence 45666777777665
No 137
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.91 E-value=28 Score=42.21 Aligned_cols=76 Identities=25% Similarity=0.273 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 246 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQ 321 (956)
Q Consensus 246 ~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~q 321 (956)
.+++...++.++|++.+..|+..+.+...+...+.+++-....-...++.++......++.+....-..+.+|.+.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666777777777777666666666666666666666666777778777777776665555555555443
No 138
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.67 E-value=24 Score=45.99 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 398 LEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 398 LeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
-+..|..+.++|..|..+.+.+.+-|.+|
T Consensus 1722 ~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1722 NEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 34455566666677777777777776666
No 139
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=90.65 E-value=26 Score=37.35 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 304 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 355 (956)
Q Consensus 304 Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~ 355 (956)
+-..+..+.++...|+.++.............+.+.+.++..++++++.|+.
T Consensus 59 Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 59 LPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555556666666555555555555555555555555555555443
No 140
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.59 E-value=27 Score=41.31 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 397 KLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 397 kLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
+.+++-+.-++.++.+..+.+.++.+.-..
T Consensus 364 rfq~ekeatqELieelrkelehlr~~kl~~ 393 (502)
T KOG0982|consen 364 RFQEEKEATQELIEELRKELEHLRRRKLVL 393 (502)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666777888888888888876666
No 141
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.51 E-value=36 Score=43.94 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.....-+.+..+-+++...++.+.++.++-.++|...
T Consensus 464 el~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~ 500 (1200)
T KOG0964|consen 464 ELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRAT 500 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555666667777777777777777777665
No 142
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.47 E-value=38 Score=38.88 Aligned_cols=156 Identities=24% Similarity=0.181 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 250 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK-SENYMLADKHKIEKEQNAQLRNQVAQLLQL 328 (956)
Q Consensus 250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~-~e~~~Leek~k~~kee~~qLq~ql~~l~~~ 328 (956)
+...+...|+.|+..|++.+.++..++..+...+....-....+..... .+...+ -.+.+.++.+..++...
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~l-------V~qLEk~~~q~~qLe~d 148 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDL-------VEQLEKLREQIEQLERD 148 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3344455566666666666666555554444433322111111111100 111112 22233344444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHH
Q 002175 329 EQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDAL 408 (956)
Q Consensus 329 eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~ 408 (956)
.+.+..+.++...+...++.+..+|-.+++..+.....+ --+.+......+.|.+.+..++++
T Consensus 149 ~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~r-----------------ivDIDaLi~ENRyL~erl~q~qeE 211 (319)
T PF09789_consen 149 LQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENR-----------------IVDIDALIMENRYLKERLKQLQEE 211 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----------------cccHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555666666666666665555433330 012233344455666666666665
Q ss_pred HHHHHHHHHHHHHHhhhhccC
Q 002175 409 IERLHEENEKLFDRLTEKASS 429 (956)
Q Consensus 409 LErL~eE~ekL~qrL~eK~Ss 429 (956)
..-+..-..+-..-|+.|.+.
T Consensus 212 ~~l~k~~i~KYK~~le~k~~~ 232 (319)
T PF09789_consen 212 KELLKQTINKYKSALERKRKK 232 (319)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 555555555555555544333
No 143
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.40 E-value=22 Score=43.49 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=16.4
Q ss_pred hHHHHHHHhhhHHHHHHhcCccchhhhh
Q 002175 539 EHEILAEIRDAVFAFIRKMEPTRVMDTM 566 (956)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (956)
-++|=+.+..|-.-| |.-+=.+.+|+-
T Consensus 516 ~~~V~~~f~~Ae~lF-~~~~Y~~al~~~ 542 (569)
T PRK04778 516 NEEVAEALNEAERLF-REYDYKAALEII 542 (569)
T ss_pred CHHHHHHHHHHHHHH-HhCChHHHHHHH
Confidence 345555666666677 766666555553
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.38 E-value=14 Score=43.70 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 334 MQIQQRDSTIKTLQAKINSIESQRNEA 360 (956)
Q Consensus 334 ~qlqe~e~eIe~LqeEik~LE~qL~el 360 (956)
...+..+..+..+..+|..|++|+..+
T Consensus 421 ~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 421 ELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333344445555566666666666443
No 145
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=30 Score=43.33 Aligned_cols=18 Identities=11% Similarity=0.093 Sum_probs=11.0
Q ss_pred HHHHhhhHHHHHHHHHHh
Q 002175 150 VLHVMKSLSALGDVLSSL 167 (956)
Q Consensus 150 a~~INkSL~aLg~VI~aL 167 (956)
...||..+-.|...|.-.
T Consensus 260 ~~~in~e~~~L~Ssl~e~ 277 (698)
T KOG0978|consen 260 FSSINREMRHLISSLQEH 277 (698)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 556777776666655433
No 146
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=90.03 E-value=19 Score=40.73 Aligned_cols=165 Identities=18% Similarity=0.150 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 252 EKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQE 331 (956)
Q Consensus 252 ~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeE 331 (956)
..+|..|+.|+..++.+-.... ..++.+++.......+|+..++--...+......+..+.. .+..+..-
T Consensus 5 q~eia~LrlEidtik~q~qekE---~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn-------~L~aENt~ 74 (305)
T PF14915_consen 5 QDEIAMLRLEIDTIKNQNQEKE---KKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLN-------VLKAENTM 74 (305)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHH-------HHHHHHHH
Confidence 4455555555555554433322 2344555555555666666666544444444444433333 33333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccc--------cccccccccccChhHHHHHHHHHHH
Q 002175 332 QKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAV--------SSVLRTTGDGMDSSAVSKKLEEELK 403 (956)
Q Consensus 332 lk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s--------~s~~k~~ee~~d~s~l~kkLeEELk 403 (956)
+..+++.....-+.|+.+++.....|.......+..-+......-+- .-..++..++....+-..-|-+.|.
T Consensus 75 L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLs 154 (305)
T PF14915_consen 75 LNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLS 154 (305)
T ss_pred HhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHH
Confidence 44445444555556666666666666555554332111000000000 0001111222233334456667777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 002175 404 KRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 404 kree~LErL~eE~ekL~qrL~eK 426 (956)
+-+.+...|.-+....++.|.+|
T Consensus 155 kaesK~nsLe~elh~trdaLrEK 177 (305)
T PF14915_consen 155 KAESKFNSLEIELHHTRDALREK 177 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888888888888
No 147
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.96 E-value=33 Score=43.20 Aligned_cols=37 Identities=32% Similarity=0.338 Sum_probs=25.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.+..+.+..+-.+...+++.+++++-+++|..-..||
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ek 509 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEK 509 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 4555666666667777777777777777777666666
No 148
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=89.84 E-value=28 Score=41.95 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 332 QKMQIQQRDSTIKTLQAKINSIESQRNE 359 (956)
Q Consensus 332 lk~qlqe~e~eIe~LqeEik~LE~qL~e 359 (956)
+..++-..++++..+--+.+++..-|..
T Consensus 238 Llsql~d~qkk~k~~~~Ekeel~~~Lq~ 265 (596)
T KOG4360|consen 238 LLSQLVDLQKKIKYLRHEKEELDEHLQA 265 (596)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555544443
No 149
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.69 E-value=17 Score=45.08 Aligned_cols=58 Identities=24% Similarity=0.424 Sum_probs=38.9
Q ss_pred hhhhhHHHHHhhhhhhhHHHHHHHHHhhccceeeecccCCCCCCCCCchhhhhhhhhhhcHHHHHH-HHHHHHhhc
Q 002175 783 EDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILN-QVKDAVRQS 857 (956)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 857 (956)
|.+.-|-++|-.||-++|+-.-+||-|--- ---+|+-|| -|.-|.++|| |+.+.+++.
T Consensus 901 ek~~~~p~~~~~ledL~qRy~a~LqmyGEk----------------~Ee~EELrl-Dl~dlK~mYk~QIdeLl~~~ 959 (961)
T KOG4673|consen 901 EKADRVPGIKAELEDLRQRYAAALQMYGEK----------------DEELEELRL-DLVDLKEMYKEQIDELLNKI 959 (961)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhcch----------------HHHHHHHHh-hHHHHHHHHHHHHHHHHhcc
Confidence 456678899999999999999999876321 123566665 4666666665 555555543
No 150
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=89.62 E-value=33 Score=45.11 Aligned_cols=19 Identities=26% Similarity=0.637 Sum_probs=10.8
Q ss_pred CcccchhhhHHhhhhhhhc
Q 002175 720 GTTGQLELLSTAIMDGWMA 738 (956)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~ 738 (956)
-..|-|=+|.--.+|||.+
T Consensus 1093 e~e~~l~~l~~~~~eg~ls 1111 (1317)
T KOG0612|consen 1093 EAEQILPLLQGSRLEGWLS 1111 (1317)
T ss_pred hhhcchhhhhhhhhhcccc
Confidence 3444455555556777754
No 151
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.04 E-value=20 Score=37.19 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 002175 254 EIQDLKQEILGLRQA 268 (956)
Q Consensus 254 eI~~Lq~EI~~Lk~~ 268 (956)
.+..++.|+.++...
T Consensus 89 ~l~~l~~el~~l~~~ 103 (191)
T PF04156_consen 89 QLQQLQEELDQLQER 103 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 152
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.88 E-value=28 Score=35.06 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002175 252 EKEIQDLKQEILGLRQALKEAND 274 (956)
Q Consensus 252 ~~eI~~Lq~EI~~Lk~~L~~~~~ 274 (956)
...+..+..++..|...+..+..
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~~ 80 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLKE 80 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 153
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=88.73 E-value=28 Score=47.68 Aligned_cols=75 Identities=21% Similarity=0.200 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 002175 254 EIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLAD---KHKIEKEQNAQLRNQVAQLLQL 328 (956)
Q Consensus 254 eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Lee---k~k~~kee~~qLq~ql~~l~~~ 328 (956)
+++.|..-+..|+..+......+..+...+++.......++..+......+.. ..+.++.++.+|+.+.+.+...
T Consensus 1223 ~vNll~EsN~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1223 EVNLLRESNKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666665555555555555555555555566555554444333 3333555666666665555544
No 154
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.59 E-value=57 Score=39.13 Aligned_cols=30 Identities=37% Similarity=0.349 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 397 KLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 397 kLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
+|++.++.++..+.++..+++.+..+|.+.
T Consensus 484 ~Lee~i~~~~~~i~El~~~l~~~e~~L~~a 513 (622)
T COG5185 484 TLEEDIKNLKHDINELTQILEKLELELSEA 513 (622)
T ss_pred eHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888999999999998877
No 155
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.30 E-value=79 Score=39.59 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 325 LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 325 l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
+......++.++....+.|+.|+.+++.|+.++
T Consensus 592 lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~ 624 (786)
T PF05483_consen 592 LENKCNNLRKQVENKNKNIEELQQENKALKKKI 624 (786)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333334455555555556666666666666555
No 156
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.22 E-value=39 Score=39.87 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=11.9
Q ss_pred hCCCCccccchhhhccch
Q 002175 503 NDFNPEQYDNLAVISDGA 520 (956)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~ 520 (956)
+||||+-|--+||-.||+
T Consensus 225 ~d~d~~~~~~iAas~d~~ 242 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKN 242 (459)
T ss_pred eeecCCCceEEeecCCCc
Confidence 567777766666666664
No 157
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=88.17 E-value=26 Score=42.83 Aligned_cols=17 Identities=29% Similarity=0.622 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002175 343 IKTLQAKINSIESQRNE 359 (956)
Q Consensus 343 Ie~LqeEik~LE~qL~e 359 (956)
...++++++.++.++..
T Consensus 350 ~~~lekeL~~Le~~~~~ 366 (569)
T PRK04778 350 VRQLEKQLESLEKQYDE 366 (569)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 158
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=88.11 E-value=42 Score=36.26 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 393 AVSKKLEEELKKRDALIERLHEENEKLFD 421 (956)
Q Consensus 393 ~l~kkLeEELkkree~LErL~eE~ekL~q 421 (956)
...++.+-.+..++..|++...||+.|-.
T Consensus 168 a~lkk~e~~~~SLe~~LeQK~kEn~ELtk 196 (207)
T PF05010_consen 168 ASLKKEEMKVQSLEESLEQKTKENEELTK 196 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566666666665543
No 159
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.64 E-value=79 Score=38.82 Aligned_cols=26 Identities=4% Similarity=0.139 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 314 QNAQLRNQVAQLLQLEQEQKMQIQQR 339 (956)
Q Consensus 314 e~~qLq~ql~~l~~~eeElk~qlqe~ 339 (956)
++++|.+.+..+....+.+...+-+.
T Consensus 340 Er~~l~r~l~~i~~~~d~l~k~vw~~ 365 (581)
T KOG0995|consen 340 ERNKLKRELNKIQSELDRLSKEVWEL 365 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444444444443333333333
No 160
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=87.47 E-value=47 Score=44.31 Aligned_cols=31 Identities=16% Similarity=0.380 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhccccce-------eecccCCCC
Q 002175 894 RQIADARRMVEVLQQMRSDVAL-------LTLEEGGSP 924 (956)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 924 (956)
..+...+.++.+|+.-..-+.| ++.-|||++
T Consensus 1071 ~~~~~l~~l~~~l~~~~~~~~l~~l~~le~~v~Eng~~ 1108 (1201)
T PF12128_consen 1071 EYVNALRELLDILPSGGFSLSLEDLFDLEFRVKENGND 1108 (1201)
T ss_pred HHHHHHHHHHHHHhhccccccHHHHeeeEEEEEECCcc
Confidence 3666677777777763322222 455667766
No 161
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=87.47 E-value=36 Score=35.24 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002175 250 EREKEIQDLKQEILGLRQALKE 271 (956)
Q Consensus 250 ~~~~eI~~Lq~EI~~Lk~~L~~ 271 (956)
.+..++.+++..+..+...+..
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~~ 113 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELEK 113 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 162
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.17 E-value=21 Score=46.25 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=29.7
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 389 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 389 ~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
....+....+++.++.++..+++++..+..|...+++.
T Consensus 398 d~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~ 435 (1141)
T KOG0018|consen 398 DHELERRAELEARIKQLKESVERLDKRRNKLAAKITSL 435 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788888888888888888888888887776
No 163
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.06 E-value=37 Score=43.77 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHhhccccchhhhhHhHHHhhHHHHHhhCccccccCchhHHHHHHHHHHHHHHHHhhccccceeeccc
Q 002175 842 SLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVALLTLEE 920 (956)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (956)
.|+++.+++++++.+...---+-.+|++...-++...|+.- ..-|||+-+ |.-- +-+|.+. +.--.||++-|
T Consensus 855 el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~---~lek~~~~~-~~~d-Ke~Ek~~--~rk~~Ll~Kre 926 (1200)
T KOG0964|consen 855 ELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAK---NLEKEKKDN-INFD-KELEKLV--RRKHMLLKKRE 926 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhh-hhhh-HHHHHHH--HHHHHHHHHHH
Confidence 35667777777776665333333455555555555555433 335777766 2211 3333332 22335666655
No 164
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=86.81 E-value=71 Score=42.07 Aligned_cols=7 Identities=29% Similarity=0.368 Sum_probs=3.3
Q ss_pred hccccCC
Q 002175 185 LADSLGE 191 (956)
Q Consensus 185 LqDsLgG 191 (956)
++|+|..
T Consensus 1480 v~~Flt~ 1486 (1758)
T KOG0994|consen 1480 VRDFLTQ 1486 (1758)
T ss_pred HHHHhcC
Confidence 3455543
No 165
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=86.72 E-value=83 Score=42.10 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 392 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 392 s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.....+++.+++.++++|++.......+.+=-.-+
T Consensus 770 ~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~ 804 (1201)
T PF12128_consen 770 PERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWL 804 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33566677777777777776666666555544443
No 166
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.68 E-value=35 Score=43.18 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 329 EQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 361 (956)
Q Consensus 329 eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~ 361 (956)
..+....+++.+.++..+++.++.+-....+.-
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a 833 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSAAA 833 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444455555555555555554444444333
No 167
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.52 E-value=8.2 Score=41.47 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 250 EREKEIQDLKQEILGLRQALKEANDQ 275 (956)
Q Consensus 250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q 275 (956)
.....+..++.|+..+++++.+...+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 55677888999999999888876543
No 168
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.47 E-value=33 Score=43.15 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHhccchhHHHHHHHhhhHHHHHHhcCccchhh
Q 002175 521 NKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMD 564 (956)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (956)
||++++++++|+=- +=+..+.|++-+=-++|.+
T Consensus 429 ~~~~~l~~~~~~gl-----------~lg~~~a~l~e~~d~~i~s 461 (754)
T TIGR01005 429 KKGPIVGLAAVLGL-----------LLGAIFALLRELFSGRAMR 461 (754)
T ss_pred chHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcccCC
Confidence 77777777665432 2245577777664444433
No 169
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=86.31 E-value=24 Score=42.01 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002175 252 EKEIQDLKQEILGLRQALKEA 272 (956)
Q Consensus 252 ~~eI~~Lq~EI~~Lk~~L~~~ 272 (956)
+..|..|+-.+.-|...++++
T Consensus 330 q~~IqdLq~sN~yLe~kvkeL 350 (527)
T PF15066_consen 330 QNRIQDLQCSNLYLEKKVKEL 350 (527)
T ss_pred HHHHHHhhhccHHHHHHHHHH
Confidence 345555555555555544444
No 170
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.20 E-value=5.3 Score=42.06 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 318 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 318 Lq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
|+..+..+......+...+.+++..++.+++++..|..++
T Consensus 121 l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 121 LEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444443
No 171
>PRK01156 chromosome segregation protein; Provisional
Probab=85.99 E-value=90 Score=40.08 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 332 QKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 332 lk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
++..+.+...++..++.++..++..+.++..
T Consensus 414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~ 444 (895)
T PRK01156 414 INVKLQDISSKVSSLNQRIRALRENLDELSR 444 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666655555443
No 172
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.91 E-value=39 Score=40.79 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=8.3
Q ss_pred HHHHhhhHHHHHHHH
Q 002175 150 VLHVMKSLSALGDVL 164 (956)
Q Consensus 150 a~~INkSL~aLg~VI 164 (956)
|.+|-.||..=...|
T Consensus 81 aAkiGqsllk~nk~L 95 (596)
T KOG4360|consen 81 AAKIGQSLLKANKAL 95 (596)
T ss_pred HHHHHHHHHhhhhhh
Confidence 556666665444444
No 173
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.61 E-value=65 Score=35.87 Aligned_cols=48 Identities=10% Similarity=0.143 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 311 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 311 ~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
+..+...++..+..+.....+++.++.....+.+.|-+..-.|+.++.
T Consensus 253 ~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIa 300 (312)
T PF00038_consen 253 LDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIA 300 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333444444444444444444444444444444444444444444443
No 174
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=85.31 E-value=60 Score=39.46 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=21.7
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 389 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 389 ~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.+.....+++..+....+...+..+.|..++...+..-
T Consensus 368 ~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ 405 (522)
T PF05701_consen 368 SELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQT 405 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555556666666666666666554
No 175
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.24 E-value=30 Score=37.90 Aligned_cols=57 Identities=14% Similarity=0.237 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175 307 KHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 363 (956)
Q Consensus 307 k~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s 363 (956)
....+.+++.+....++.+.....+.+.+.......+..+.+++..|+.+++++..+
T Consensus 47 Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 47 ERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555566666666666666666667777777777778888877777666
No 176
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.13 E-value=38 Score=44.05 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 002175 245 RKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK 285 (956)
Q Consensus 245 r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~ 285 (956)
.+.++..+.....++.+++.++.++............+++.
T Consensus 309 ~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~ 349 (1141)
T KOG0018|consen 309 EKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE 349 (1141)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666666666655554444444444
No 177
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=85.04 E-value=38 Score=32.74 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 305 ADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360 (956)
Q Consensus 305 eek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el 360 (956)
..+.+.....................+....+......+..++.++..++..+...
T Consensus 52 ~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 52 DKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444455555555666666666666666555443
No 178
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.04 E-value=50 Score=38.49 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 314 QNAQLRNQVAQLLQLEQEQKMQIQQR 339 (956)
Q Consensus 314 e~~qLq~ql~~l~~~eeElk~qlqe~ 339 (956)
-+..+...+.++....++.|.+++++
T Consensus 295 ~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 295 GVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444455555544
No 179
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=84.98 E-value=67 Score=35.44 Aligned_cols=115 Identities=16% Similarity=0.263 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 249 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSD---LKSENYMLADKHKIEKEQNAQLRNQVAQL 325 (956)
Q Consensus 249 ~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~e---L~~e~~~Leek~k~~kee~~qLq~ql~~l 325 (956)
.++...+..++.+.......|.........+.............|+.. +......+........++...|..++...
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~ 87 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREA 87 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666665555444444443333333333332 22222333333333455666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175 326 LQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 363 (956)
Q Consensus 326 ~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s 363 (956)
......+....+..+.+...++.++...+..+......
T Consensus 88 ~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 88 EAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777765554443
No 180
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=84.81 E-value=92 Score=36.93 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 002175 284 QKAWKVSFTLQSDLKSENY 302 (956)
Q Consensus 284 q~~~k~~~eLE~eL~~e~~ 302 (956)
...|+.+.+|+.+.+..+.
T Consensus 204 N~LwKrmdkLe~ekr~Lq~ 222 (552)
T KOG2129|consen 204 NSLWKRMDKLEQEKRYLQK 222 (552)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3466666666665554443
No 181
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.81 E-value=54 Score=38.96 Aligned_cols=42 Identities=12% Similarity=0.247 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 321 QVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 321 ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
++.+++....++........-.+..++.++..++.++.+...
T Consensus 255 ~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~ 296 (498)
T TIGR03007 255 RIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGS 296 (498)
T ss_pred HHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhcc
Confidence 333333333333333333344466667777777777655443
No 182
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=84.68 E-value=32 Score=40.56 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 002175 298 KSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQE-QKMQIQQRDSTIKTLQAKINSIE 354 (956)
Q Consensus 298 ~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeE-lk~qlqe~e~eIe~LqeEik~LE 354 (956)
...+..+.+..+.++.++..|++.+..+.+..+. ......+..+.++..+..+.+||
T Consensus 261 erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 261 ERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445556677777888888898888888776665 34455666777888888888888
No 183
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=84.24 E-value=47 Score=37.04 Aligned_cols=64 Identities=20% Similarity=0.244 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002175 303 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEV 366 (956)
Q Consensus 303 ~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~ 366 (956)
.++-+....+.+.++|+.....+....+++...++..++.|--|++++++.+..++.+.+....
T Consensus 240 ~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q 303 (330)
T KOG2991|consen 240 ELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQ 303 (330)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666777778887777777778888888888888888888888888777777766554
No 184
>PF15294 Leu_zip: Leucine zipper
Probab=84.23 E-value=39 Score=38.06 Aligned_cols=99 Identities=24% Similarity=0.292 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 002175 250 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHK-----IEKEQNAQLRNQVAQ 324 (956)
Q Consensus 250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k-----~~kee~~qLq~ql~~ 324 (956)
-+..+|.+|+.|++.|+..+.....++.....+-.+. +.++...+........ ....+...|..++..
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl-------~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~ 201 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKL-------EAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAA 201 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhccccccccccchhhHHHHHHH
Confidence 4678999999999999999999988877665554333 3333333331111111 112233444555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 325 LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 325 l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
+. .++...+....+..+.+++.+...+.++-
T Consensus 202 lK---~e~ek~~~d~~~~~k~L~e~L~~~KhelL 232 (278)
T PF15294_consen 202 LK---SELEKALQDKESQQKALEETLQSCKHELL 232 (278)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 23444455555556666666666655543
No 185
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=84.22 E-value=47 Score=33.03 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 332 QKMQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 332 lk~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
+..++.+.+..+..|...+..|-.||+
T Consensus 103 le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 103 LEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555555555555543
No 186
>PRK11281 hypothetical protein; Provisional
Probab=84.15 E-value=29 Score=45.85 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=7.5
Q ss_pred HhhhhhhhHHHHHHH
Q 002175 792 RSALESVDHRRRKVL 806 (956)
Q Consensus 792 ~~~~~~~~~~~~~~~ 806 (956)
|=|.+..-.||..+.
T Consensus 745 Rla~~ra~~rR~~~~ 759 (1113)
T PRK11281 745 RLAYRRALAKRQNLV 759 (1113)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555553
No 187
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.04 E-value=15 Score=39.58 Aligned_cols=29 Identities=10% Similarity=0.292 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 244 ARKELYEREKEIQDLKQEILGLRQALKEA 272 (956)
Q Consensus 244 ~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~ 272 (956)
.+..+..++.++..++.++..+.++.++.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~ 119 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQR 119 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44556677778888888888777776654
No 188
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=84.04 E-value=71 Score=36.53 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 397 KLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 397 kLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
...+++....+.+..+..+.+.+...+...
T Consensus 243 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 272 (423)
T TIGR01843 243 EVLEELTEAQARLAELRERLNKARDRLQRL 272 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555666666666666666665543
No 189
>PRK01156 chromosome segregation protein; Provisional
Probab=83.96 E-value=73 Score=40.88 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002175 340 DSTIKTLQAKINSIESQRNEA 360 (956)
Q Consensus 340 e~eIe~LqeEik~LE~qL~el 360 (956)
...+..+..++..++.++..+
T Consensus 642 ~~~i~~~~~~i~~l~~~i~~l 662 (895)
T PRK01156 642 KILIEKLRGKIDNYKKQIAEI 662 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 190
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.86 E-value=71 Score=34.85 Aligned_cols=25 Identities=40% Similarity=0.513 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 248 LYEREKEIQDLKQEILGLRQALKEA 272 (956)
Q Consensus 248 l~~~~~eI~~Lq~EI~~Lk~~L~~~ 272 (956)
+..+...+.+++.+.+.++.++...
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666655554
No 191
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=83.68 E-value=72 Score=34.80 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=7.9
Q ss_pred cCCCCCCCCchhhhhhH
Q 002175 739 GLGGAVPPSTDALGQLL 755 (956)
Q Consensus 739 ~~~~~~~~~~~~~~~~~ 755 (956)
|++++.-...|.||-|+
T Consensus 276 ~~~~~~l~~~~~l~nl~ 292 (302)
T PF10186_consen 276 GIDVPLLDPRDTLGNLL 292 (302)
T ss_pred CCCCCcCCchhhHHHHH
Confidence 45555334444444443
No 192
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=83.57 E-value=81 Score=35.30 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002175 331 EQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 364 (956)
Q Consensus 331 Elk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~ 364 (956)
.++.++......|..++++|..|+.+++++....
T Consensus 190 ~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 190 VMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556666667777777777777777777665543
No 193
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=83.13 E-value=1e+02 Score=36.23 Aligned_cols=75 Identities=23% Similarity=0.291 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHHH
Q 002175 332 QKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIER 411 (956)
Q Consensus 332 lk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LEr 411 (956)
+..-+.-++++|+-|+++|.-|+.+++..++...- ....+.++...|--.-.+-+..|.+
T Consensus 510 LEVLLRVKEsEiQYLKqEissLkDELQtalrDKky--------------------aSdKYkDiYtELSiaKakadcdIsr 569 (593)
T KOG4807|consen 510 LEVLLRVKESEIQYLKQEISSLKDELQTALRDKKY--------------------ASDKYKDIYTELSIAKAKADCDISR 569 (593)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhc--------------------cccchhHHHHHHHHHHHhhhccHHH
Confidence 44455556788889999999999888877665433 1123444444555444555566777
Q ss_pred HHHHHHHHHHHhhhh
Q 002175 412 LHEENEKLFDRLTEK 426 (956)
Q Consensus 412 L~eE~ekL~qrL~eK 426 (956)
|.+...-.-..|.+|
T Consensus 570 LKEqLkaAteALgEK 584 (593)
T KOG4807|consen 570 LKEQLKAATEALGEK 584 (593)
T ss_pred HHHHHHHHHHHhccc
Confidence 777777777888888
No 194
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=82.84 E-value=51 Score=36.33 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 398 LEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 398 LeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.+.+-..+...+...+...++...+|...
T Consensus 101 ke~Ea~~lq~el~~ar~~~~~ak~~L~~~ 129 (246)
T PF00769_consen 101 KEEEAEELQEELEEAREDEEEAKEELLEV 129 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555556566666666555
No 195
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.72 E-value=88 Score=39.23 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=27.3
Q ss_pred hhHhHHHh-hHHHHHhhCccccccCchhHHHHHHHHHHHHHHHHhhccccc
Q 002175 865 SKKKAMLT-SLDELAERMPSLLDIDHPCAQRQIADARRMVEVLQQMRSDVA 914 (956)
Q Consensus 865 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (956)
+|+-+-|. -+-..+.||.-|= -|-+-.|-.-|.+|.+|.-.+-|+.
T Consensus 599 ~~ev~qlk~ev~s~ekr~~rlk----~vF~~ki~eFr~ac~sL~Gykid~~ 645 (716)
T KOG4593|consen 599 SKEVAQLKKEVESAEKRNQRLK----EVFASKIQEFRDACYSLLGYKIDFT 645 (716)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 44444332 2333444444442 3777788888899988886665554
No 196
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=82.60 E-value=1e+02 Score=41.79 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 397 KLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 397 kLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
+++.++........+...+.+...++|..-
T Consensus 365 ~~~~~~~~~~~r~~~~~~~l~~~~~el~~~ 394 (1353)
T TIGR02680 365 EERRRLDEEAGRLDDAERELRAAREQLARA 394 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 197
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=82.51 E-value=1.1e+02 Score=36.28 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002175 398 LEEELKKRDALIERLHEENEKLFDRLTE 425 (956)
Q Consensus 398 LeEELkkree~LErL~eE~ekL~qrL~e 425 (956)
.+.++..++...+..+...+.+.+++.+
T Consensus 353 ~~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 353 VEAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554
No 198
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=82.35 E-value=97 Score=35.31 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 318 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 318 Lq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
|..++..+.....++...+.+.-.+++.+..++..+-....+..+
T Consensus 163 l~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rk 207 (294)
T COG1340 163 LKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRK 207 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444433333
No 199
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.19 E-value=15 Score=38.77 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 310 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 310 ~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
....++......+..+..+...++.+....+.++..++.++..|=....
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555556666666666666666666554443
No 200
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.85 E-value=1.5e+02 Score=37.26 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=20.0
Q ss_pred ChhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhh
Q 002175 390 DSSAVSKKLEEELKK---RDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 390 d~s~l~kkLeEELkk---ree~LErL~eE~ekL~qrL~eK 426 (956)
.+..-.+.++.++.. .+....-|..||.++..+|...
T Consensus 279 ~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rw 318 (716)
T KOG4593|consen 279 LLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRW 318 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333334444443333 3333455667888888777654
No 201
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=81.60 E-value=89 Score=39.95 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 002175 409 IERLHEENEKLFDRLTEK 426 (956)
Q Consensus 409 LErL~eE~ekL~qrL~eK 426 (956)
|..|..||.+|+--+..|
T Consensus 192 iakLEaEC~rLr~l~rk~ 209 (769)
T PF05911_consen 192 IAKLEAECQRLRALVRKK 209 (769)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 566679999998776666
No 202
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=81.28 E-value=58 Score=38.01 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 250 EREKEIQDLKQEILGLRQALKEANDQC 276 (956)
Q Consensus 250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~ 276 (956)
-++.++..++.++...+.++.....++
T Consensus 175 fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 175 WFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555666666666655555554443
No 203
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.75 E-value=59 Score=35.55 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=9.5
Q ss_pred eEEEeccCcc-ccccCCchhh
Q 002175 478 TVALVKSSSE-KIKTTPAGEY 497 (956)
Q Consensus 478 ~~~~~~~~~~-~~~~~~~~~~ 497 (956)
.|-++.-|-- .+-.||-|.+
T Consensus 183 ~V~~LrlGr~~l~~~t~Dg~~ 203 (251)
T PF11932_consen 183 QVDFLRLGRVALYYQTLDGSQ 203 (251)
T ss_pred EEEEEeecchhheeECCCccc
Confidence 3344444432 2556666654
No 204
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=80.70 E-value=1.2e+02 Score=37.06 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=23.6
Q ss_pred chhHHHHHHHhhhHHHHHHhcCccchhh
Q 002175 537 SREHEILAEIRDAVFAFIRKMEPTRVMD 564 (956)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (956)
+|=.|+.+..+.-|...|++.-..-||+
T Consensus 276 ~riee~~~~~~~~~~~~i~~~g~~~~~~ 303 (514)
T TIGR03319 276 ARIEEMVEKATKEVDNAIREEGEQAAFD 303 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888999999999888888887
No 205
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=80.53 E-value=75 Score=32.87 Aligned_cols=114 Identities=11% Similarity=0.155 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 002175 250 EREKEIQDLKQEILGLRQALKEANDQCVL-LYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKE---QNAQLRNQVAQL 325 (956)
Q Consensus 250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~-l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~ke---e~~qLq~ql~~l 325 (956)
........++..+..+..++.....-... ..-+.+...-....+...+.+.+.++......... ....++.++..+
T Consensus 10 ~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~ 89 (177)
T PF13870_consen 10 KLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFL 89 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555554444322111 11222222223334445555555554444333322 223333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175 326 LQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 363 (956)
Q Consensus 326 ~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s 363 (956)
......++.++...+..+..+.+++...+.+...+...
T Consensus 90 ~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~ 127 (177)
T PF13870_consen 90 SEELERLKQELKDREEELAKLREELYRVKKERDKLRKQ 127 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555544444443
No 206
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=80.30 E-value=66 Score=34.76 Aligned_cols=20 Identities=10% Similarity=0.224 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002175 340 DSTIKTLQAKINSIESQRNE 359 (956)
Q Consensus 340 e~eIe~LqeEik~LE~qL~e 359 (956)
..++..+..++..|+..+..
T Consensus 86 rekl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 86 REKLGQLEAELAELREELAC 105 (202)
T ss_pred hhhhhhhHHHHHHHHHHHHh
Confidence 33444444455555544443
No 207
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.30 E-value=1.2e+02 Score=35.01 Aligned_cols=148 Identities=15% Similarity=0.138 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
Q 002175 278 LLYNEVQKAWKVSFTLQSDLKSENYMLADKHK---IEKEQNAQLRNQVAQL--------------LQLEQEQKMQIQQRD 340 (956)
Q Consensus 278 ~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k---~~kee~~qLq~ql~~l--------------~~~eeElk~qlqe~e 340 (956)
.+...+++.......|+.++...-.+.++... .++....+|..++..+ ..+...++.++.+.+
T Consensus 130 ~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~q 209 (319)
T PF09789_consen 130 DLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQ 209 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777666554444433322 2344444454443333 333334555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCCC-Cc----------------cccccccccccccChhHHHHHHHHHHH
Q 002175 341 STIKTLQAKINSIESQRNEALHSSEVRSTIRSEP-MP----------------AVSSVLRTTGDGMDSSAVSKKLEEELK 403 (956)
Q Consensus 341 ~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es-~~----------------~s~s~~k~~ee~~d~s~l~kkLeEELk 403 (956)
.+...+...+.+++.-++.-.............+ .. ..-+.+.......|...+.--|-+.+.
T Consensus 210 eE~~l~k~~i~KYK~~le~k~~~~~~k~~~~~~~~~~~v~s~kQv~~ll~~~~~~~~~~~~~~s~sdLksl~~aLle~in 289 (319)
T PF09789_consen 210 EEKELLKQTINKYKSALERKRKKGIIKLGNSASSNLTGVMSAKQVKELLESESNGCSLPASPQSISDLKSLATALLETIN 289 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCCCCCcccccccHHHHHHHHhcccccCCCCCCcchHHHHHHHHHHHHHHhh
Confidence 5555555555555554443111111110000001 00 001223333345577777778888887
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 002175 404 KRDALIERLHEENEKLFDRLTE 425 (956)
Q Consensus 404 kree~LErL~eE~ekL~qrL~e 425 (956)
++.=-|.=++.-|.=|-.|++|
T Consensus 290 dK~~al~Hqr~tNkILg~rv~E 311 (319)
T PF09789_consen 290 DKNLALQHQRKTNKILGNRVAE 311 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777666777767666665
No 208
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=80.29 E-value=1.4e+02 Score=37.93 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175 318 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 363 (956)
Q Consensus 318 Lq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s 363 (956)
++-+++.-..+..-+...+.+++.+|..|++-.+.|+.....++..
T Consensus 513 ~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~d 558 (861)
T PF15254_consen 513 LQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSD 558 (861)
T ss_pred HhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334444444444477788888888888888888888777666663
No 209
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.26 E-value=69 Score=35.18 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 297 LKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ 356 (956)
Q Consensus 297 L~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~q 356 (956)
|..+.....+.++..+..++.|...+.+.....+..+..+.....++..|.+++.+++.+
T Consensus 44 L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 44 LLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555556666677777777777777777777777788888888888888877
No 210
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.17 E-value=29 Score=39.50 Aligned_cols=39 Identities=8% Similarity=0.105 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002175 326 LQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 364 (956)
Q Consensus 326 ~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~ 364 (956)
-.....++.++.+.+.+.+.++..+.....++..+.+.+
T Consensus 98 ~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 98 WREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444555566666667777777777777776666653
No 211
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=80.16 E-value=59 Score=40.43 Aligned_cols=18 Identities=39% Similarity=0.612 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 002175 409 IERLHEENEKLFDRLTEK 426 (956)
Q Consensus 409 LErL~eE~ekL~qrL~eK 426 (956)
...+.++....+.+|..+
T Consensus 504 ~~~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 504 LQQLEEEITKSFKKLMRK 521 (650)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 455667777777777666
No 212
>PRK12704 phosphodiesterase; Provisional
Probab=79.97 E-value=1.2e+02 Score=37.19 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=21.9
Q ss_pred HHHhccchhHHHHHHHhhhHHHHHHhcCccchhh
Q 002175 531 VIKAGASREHEILAEIRDAVFAFIRKMEPTRVMD 564 (956)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (956)
.|||. |=.|+.+.++..+-.+|+..--..+++
T Consensus 278 ~i~P~--~iee~~~~~~~~~~~~~~~~ge~~~~~ 309 (520)
T PRK12704 278 RIHPA--RIEEMVEKARKEVDEEIREEGEQAVFE 309 (520)
T ss_pred CcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665 677888888888777766655544444
No 213
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=79.94 E-value=88 Score=33.30 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccccccc
Q 002175 310 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGM 389 (956)
Q Consensus 310 ~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~ 389 (956)
.+..+...++.++.........++..+...+.++..++.+...+..+.+............ .+ . ...
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~--------~~---~--~~~ 161 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEAL--------AS---F--SVS 161 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cc---C--Ccc
Confidence 3445556666666666666666666666666666666666666655554333322221000 00 0 023
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEEN 416 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ 416 (956)
+....-..+++.+...+...+...+-.
T Consensus 162 ~a~~~~er~e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 162 SAMDSFERMEEKIEEMEARAEASAELA 188 (221)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555667777666666665444333
No 214
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.77 E-value=39 Score=41.12 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=29.6
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 389 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 389 ~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
....+...++..+|+.++-.|++..+++-++...|..-
T Consensus 369 ssLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 369 SSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566788888899999999999999998877654
No 215
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=79.51 E-value=1.6e+02 Score=35.97 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 399 EEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 399 eEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
+..|......++....--....+.|..-
T Consensus 413 E~rL~aa~ke~eaaKasEa~Ala~ik~l 440 (522)
T PF05701_consen 413 EERLEAALKEAEAAKASEALALAEIKAL 440 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333334444433
No 216
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=79.30 E-value=1.4e+02 Score=35.24 Aligned_cols=74 Identities=11% Similarity=0.141 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 282 EVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 355 (956)
Q Consensus 282 Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~ 355 (956)
+++.-..+...++.+.........+.....+.+.+-|..+..+..-+...+-..++.....+...+.+.++|-.
T Consensus 397 EmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELna 470 (593)
T KOG4807|consen 397 EMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNA 470 (593)
T ss_pred HHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33333333334444555555555555555566666666655554443333444444444444444444444333
No 217
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=78.94 E-value=1.5e+02 Score=38.77 Aligned_cols=25 Identities=20% Similarity=0.096 Sum_probs=12.8
Q ss_pred hhcccccchhhhhHHHHHhhhhhhh
Q 002175 775 GTLATEDAEDASQVSKLRSALESVD 799 (956)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (956)
..+-++.++-..++.|.|+.||-++
T Consensus 646 ~~~~~~~r~lee~~~k~~k~le~~~ 670 (1072)
T KOG0979|consen 646 DIRSSTLRELEEKKQKERKELEEEQ 670 (1072)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555443
No 218
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.92 E-value=1.8e+02 Score=36.27 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 002175 341 STIKTLQAKINSIESQRNEALHS 363 (956)
Q Consensus 341 ~eIe~LqeEik~LE~qL~el~~s 363 (956)
..+..+.+++..++.++.++...
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~ 413 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKK 413 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544443
No 219
>PRK00106 hypothetical protein; Provisional
Probab=78.91 E-value=1.5e+02 Score=36.53 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=33.7
Q ss_pred hhCCCCccccchhhhccchhhHHHHHHHHHHHhc---cchhHHHHHHHhhhHHHHHHhcCccchhhh
Q 002175 502 LNDFNPEQYDNLAVISDGANKLLMLVLAAVIKAG---ASREHEILAEIRDAVFAFIRKMEPTRVMDT 565 (956)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (956)
|..|||=--| || .+.|--.|+=| .+|=.|+....+.-|..+|++.--..|+|.
T Consensus 270 lS~fdpvRRe----iA-------r~~le~Li~dgrIhp~rIEe~v~k~~~e~~~~i~~~Ge~a~~~l 325 (535)
T PRK00106 270 LSGFDPIRRE----IA-------RMTLESLIKDGRIHPARIEELVEKNRLEMDNRIREYGEAAAYEI 325 (535)
T ss_pred EeCCChHHHH----HH-------HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6779985443 22 22333444444 356678888888888888887766666664
No 220
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=78.86 E-value=1.7e+02 Score=36.06 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002175 251 REKEIQDLKQEILGLRQALKEA 272 (956)
Q Consensus 251 ~~~eI~~Lq~EI~~Lk~~L~~~ 272 (956)
...+|..++.++......+...
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~l 271 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKNL 271 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 3456667777766666666554
No 221
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=78.68 E-value=1.3e+02 Score=34.45 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 002175 408 LIERLHEENEKLFDRLTE 425 (956)
Q Consensus 408 ~LErL~eE~ekL~qrL~e 425 (956)
.+.++..+...+..++..
T Consensus 247 ~l~~~~~~l~~~~~~l~~ 264 (423)
T TIGR01843 247 ELTEAQARLAELRERLNK 264 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 222
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.66 E-value=73 Score=39.43 Aligned_cols=45 Identities=16% Similarity=0.294 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 313 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 313 ee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
+....+...+..+..+..+++..+.+++.+|..|+.++..++...
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555555444
No 223
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=78.49 E-value=39 Score=37.90 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=18.5
Q ss_pred cchhHHHHHHHh--hhHHHHHHhcCccch----hhhhh
Q 002175 536 ASREHEILAEIR--DAVFAFIRKMEPTRV----MDTML 567 (956)
Q Consensus 536 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~ 567 (956)
++--|.=+|-=+ -+||+|=-.--|-+. ++|=+
T Consensus 200 stmsHRdIArhQasSSVFsWQqektps~~ss~~~eTp~ 237 (307)
T PF10481_consen 200 STMSHRDIARHQASSSVFSWQQEKTPSRLSSNSQETPL 237 (307)
T ss_pred ccccHHHHHHHhccCcccccccccCccccccccccCCc
Confidence 334454444333 368888877777776 55543
No 224
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=78.32 E-value=1.6e+02 Score=35.46 Aligned_cols=12 Identities=17% Similarity=0.265 Sum_probs=6.5
Q ss_pred EEEEEEEEEcCc
Q 002175 34 FAVTVFELYNEQ 45 (956)
Q Consensus 34 VsVSylEIYNE~ 45 (956)
+.+-..|.+|+.
T Consensus 95 CKFH~~Eafnde 106 (527)
T PF15066_consen 95 CKFHWTEAFNDE 106 (527)
T ss_pred hhhhhhhhcccc
Confidence 344455666665
No 225
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.06 E-value=53 Score=42.23 Aligned_cols=36 Identities=19% Similarity=-0.061 Sum_probs=31.2
Q ss_pred cchhHHHHHHHhhhHHHHHHhcCccchhhhhhhhhh
Q 002175 536 ASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRV 571 (956)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (956)
.+|||||.+-..++.+.|.+-++-+.||--=++.+=
T Consensus 693 ~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r 728 (913)
T KOG0244|consen 693 PSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLR 728 (913)
T ss_pred hccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999876665543
No 226
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=77.88 E-value=1.2e+02 Score=34.10 Aligned_cols=23 Identities=4% Similarity=0.141 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002175 338 QRDSTIKTLQAKINSIESQRNEA 360 (956)
Q Consensus 338 e~e~eIe~LqeEik~LE~qL~el 360 (956)
..+.+|+.-..+++..+..|..+
T Consensus 194 ~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 194 NLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 227
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=77.86 E-value=1.3e+02 Score=35.84 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002175 304 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 364 (956)
Q Consensus 304 Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~ 364 (956)
+......++....++.++..+.-+.-...+.++-+.+..+..++.++.--+.|+..+.+.+
T Consensus 209 l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 209 LDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333333333333333333333333444445556777888888777777777777654
No 228
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.65 E-value=38 Score=41.73 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=15.2
Q ss_pred eeCCCCCCHHHhHHH-----HHHHHHhcccc
Q 002175 200 NICPNAANMSETLSS-----LNFSSRARSTV 225 (956)
Q Consensus 200 ~VSPs~~~~eETLsT-----LrFAsrAK~I~ 225 (956)
.++++..|..+.+.. +.|-.+..+|.
T Consensus 335 ~~~~~ddH~RDALAAA~kAY~~yk~kl~~vE 365 (652)
T COG2433 335 KISVSDDHERDALAAAYKAYLAYKPKLEKVE 365 (652)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777654 34445555544
No 229
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=77.53 E-value=1.9e+02 Score=35.68 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHhhccccchhhhhHhHHH-hhHHHHHhhCccc
Q 002175 842 SLDGILNQVKDAVRQSSVNTLSRSKKKAML-TSLDELAERMPSL 884 (956)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 884 (956)
...+-+.++.+-+.+.|.+.-.-++..... ..++.|.+....|
T Consensus 448 ~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~l 491 (560)
T PF06160_consen 448 DVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEEL 491 (560)
T ss_pred HHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777777777777666665432 3455555544433
No 230
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=77.43 E-value=2.2e+02 Score=36.38 Aligned_cols=76 Identities=34% Similarity=0.478 Sum_probs=46.0
Q ss_pred hhHHHHHhhhhhhhHHHHHHHHHhhccceeeecccCCCCCCCCCchhhhhhhhhhhc---------------HHHHHHHH
Q 002175 786 SQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLIS---------------LDGILNQV 850 (956)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~ 850 (956)
.||-||||-|. -||..|-+ +|| +|. -|--| | +.=||+|=| |-.=||..
T Consensus 590 eqilKLKSLLS---TKREQIaT-LRT---VLK--------ANKqT-A-EvALanLKsKYE~EK~~v~etm~kLRnELK~L 652 (717)
T PF09730_consen 590 EQILKLKSLLS---TKREQIAT-LRT---VLK--------ANKQT-A-EVALANLKSKYENEKAMVSETMMKLRNELKAL 652 (717)
T ss_pred HHHHHHHHHHH---HHHHHHHH-HHH---HHH--------HHHHH-H-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 48999999986 47777643 343 111 01122 2 344666543 23334444
Q ss_pred H-HHHhhccccchhhhhHhHHHhhHHHHH
Q 002175 851 K-DAVRQSSVNTLSRSKKKAMLTSLDELA 878 (956)
Q Consensus 851 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (956)
| |.---+|+..+++.+=-.|..-||++.
T Consensus 653 KEDAATFsSlRamFa~RCdEYvtQldemq 681 (717)
T PF09730_consen 653 KEDAATFSSLRAMFAARCDEYVTQLDEMQ 681 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 345567888888888888888888873
No 231
>PF14992 TMCO5: TMCO5 family
Probab=77.36 E-value=34 Score=38.55 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=26.7
Q ss_pred HhhhHHHHHHhcCccchhhh--hhhhhhhhHHHHHhhhc
Q 002175 546 IRDAVFAFIRKMEPTRVMDT--MLVSRVRILYIRSLLAR 582 (956)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 582 (956)
.-+-+|-||.-.-|.-+.|+ ++.||-++--.|.+|.=
T Consensus 231 LL~y~~f~~~fInpdll~~~LP~~L~R~tlw~LR~~l~P 269 (280)
T PF14992_consen 231 LLGYLLFYIQFINPDLLEDVLPKMLSRRTLWRLREFLFP 269 (280)
T ss_pred HHHHHHHHHhhcCcHHHHHHhHHhcchhHHHHHHHHHhh
Confidence 44566778888888887775 45677777778877753
No 232
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=77.12 E-value=82 Score=31.37 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHH
Q 002175 240 IANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKA 286 (956)
Q Consensus 240 ~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~ 286 (956)
+.......+..++.++..++.++..|..+-+....+...+..+....
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888899999999999999888888888877776655444
No 233
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=77.09 E-value=2e+02 Score=39.30 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=6.9
Q ss_pred HHHHHHhhhHHHH
Q 002175 541 EILAEIRDAVFAF 553 (956)
Q Consensus 541 ~~~~~~~~~~~~~ 553 (956)
+.-.+..+++|.|
T Consensus 483 ~~~~~~~~~~~~~ 495 (1353)
T TIGR02680 483 DEAVHREGARLAW 495 (1353)
T ss_pred HHHHHHHHHHHHH
Confidence 3344455666664
No 234
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=76.74 E-value=55 Score=38.97 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 252 EKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFT--LQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLE 329 (956)
Q Consensus 252 ~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~e--LE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~e 329 (956)
..+++.|+.|+..|++...............+......... ........+.++..-.+.+...-..|-.++..++...
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~V 229 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLV 229 (424)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666555444333333222221111111 1111223344455555555556666666666666666
Q ss_pred HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q 002175 330 QEQKMQ------------IQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 330 eElk~q------------lqe~e~eIe~LqeEik~LE~qL~ 358 (956)
++++.. ++...+.|..+..+++.++..+.
T Consensus 230 E~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~ 270 (424)
T PF03915_consen 230 EDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIK 270 (424)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654443 33344445555555555555444
No 235
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.46 E-value=47 Score=37.85 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 319 RNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 319 q~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
+.+...+...+++.......++.+...++++...++.++.....
T Consensus 84 e~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 84 EEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444444444444443333
No 236
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=76.22 E-value=1.7e+02 Score=34.68 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 397 KLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 397 kLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
...+++...+.++..+..+.+....+|...
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~ 317 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKG 317 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455666666667777777776666666544
No 237
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=76.12 E-value=1.7e+02 Score=38.97 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=12.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002175 291 FTLQSDLKSENYMLADKHKIEKEQNAQL 318 (956)
Q Consensus 291 ~eLE~eL~~e~~~Leek~k~~kee~~qL 318 (956)
.+|++++......+.+..+.....+.++
T Consensus 105 ~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 105 DALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445555544444444444444333333
No 238
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.07 E-value=1.9e+02 Score=34.92 Aligned_cols=35 Identities=31% Similarity=0.287 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 392 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 392 s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
....++++.++....++++.-.+.+++|+.+|..-
T Consensus 344 ~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 35566777777777777777777777777776544
No 239
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=75.87 E-value=77 Score=37.46 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCC------CCCCCCCCCCCCCCccccccCCCCCCCC
Q 002175 411 RLHEENEKLFDRLTEKASSVSSPQ------LSSPLSKGSVNVQPRDMARNDNNNKGLP 462 (956)
Q Consensus 411 rL~eE~ekL~qrL~eK~Ssgsspq------~~Sp~s~~s~~~q~~~~~r~~~~~~~~~ 462 (956)
++..|...|.++|+...|-.+-++ .+-|+.+.....+++++.+...+...+.
T Consensus 218 rqe~e~qELeqkleagls~~~l~p~~~~~g~~~p~~s~~~p~~~~~l~~~~~~~~~ra 275 (558)
T PF15358_consen 218 RQEAEWQELEQKLEAGLSRSGLPPTADSTGCPGPPGSPEEPPRPRNLAPAGWGGGPRA 275 (558)
T ss_pred hhhhhHHHHHHHHhhhhhhcCCCccccCCCCCCCCCCCCCCCCcccccccccccCCCC
Confidence 344555556666666433333222 1122223333566677765554444433
No 240
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=75.36 E-value=2e+02 Score=34.96 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=24.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRL 423 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL 423 (956)
+.+.+...|-+-|-.++..|+.+..|+..|.-.|
T Consensus 389 elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lql 422 (511)
T PF09787_consen 389 ELESRLTQLTESLIQKQTQLESLGSEKNALRLQL 422 (511)
T ss_pred hHHHHHhhccHHHHHHHHHHHHHHhhhhhccccH
Confidence 5666777777777788888888888887774333
No 241
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=75.30 E-value=1.6e+02 Score=34.52 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002175 329 EQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEV 366 (956)
Q Consensus 329 eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~ 366 (956)
..+.+.+.++....+..+..++.++-.+++..+...+.
T Consensus 282 ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 282 LSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555544444443
No 242
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=74.58 E-value=2.4e+02 Score=35.59 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002175 250 EREKEIQDLKQEILGLRQALKEA 272 (956)
Q Consensus 250 ~~~~eI~~Lq~EI~~Lk~~L~~~ 272 (956)
-+..++..++.++...+.++...
T Consensus 198 ~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 198 FLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444444443
No 243
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=74.56 E-value=1.2e+02 Score=32.14 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=13.5
Q ss_pred eEEEEEeeCCCCCCHHHhHHH
Q 002175 194 KTLMIVNICPNAANMSETLSS 214 (956)
Q Consensus 194 kT~mIv~VSPs~~~~eETLsT 214 (956)
....+-++|+.+..-.+.+..
T Consensus 18 ~~~~~q~vS~~p~tR~dVi~L 38 (189)
T PF10211_consen 18 GQLWIQFVSSAPATRQDVIQL 38 (189)
T ss_pred CeeeEeeeCCCCCCHHHHHHH
Confidence 456667778777666655544
No 244
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=74.55 E-value=1.3e+02 Score=37.81 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=22.6
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 389 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLT 424 (956)
Q Consensus 389 ~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~ 424 (956)
.....+.++|.++-.++-+.++.+......|=.+|.
T Consensus 229 ~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l~ 264 (660)
T KOG4302|consen 229 DRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLLD 264 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445556666666666666666666666666655543
No 245
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=73.87 E-value=68 Score=35.59 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=30.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASSV 430 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK~Ssg 430 (956)
+.++..+++.+++..++.+++.|+.+|-+|++++.--.|=.
T Consensus 97 ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 97 ELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 44445566666667777788889999999999998884443
No 246
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=73.64 E-value=62 Score=40.63 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=10.2
Q ss_pred hhhhhhccCCCCCCC
Q 002175 732 IMDGWMAGLGGAVPP 746 (956)
Q Consensus 732 ~~~~~~~~~~~~~~~ 746 (956)
|-.-|.--||.|++-
T Consensus 677 igneWLPslGLpQYr 691 (916)
T KOG0249|consen 677 IGNEWLPSLGLPQYR 691 (916)
T ss_pred eccccccccCchHHH
Confidence 445677888877654
No 247
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=73.36 E-value=1.3e+02 Score=38.44 Aligned_cols=36 Identities=33% Similarity=0.365 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 391 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 391 ~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
...-...|+.+|.+.+..-+.+...+.+|...|...
T Consensus 678 l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~ 713 (769)
T PF05911_consen 678 LQSKISSLEEELEKERALSEELEAKCRELEEELERM 713 (769)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh
Confidence 334445566666666666666666777777777766
No 248
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.32 E-value=2e+02 Score=34.50 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002175 314 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEV 366 (956)
Q Consensus 314 e~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~ 366 (956)
+++.++.++...++....+...+..++.+-+.-++-+.++..++..+......
T Consensus 340 ~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~ 392 (502)
T KOG0982|consen 340 LLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLV 392 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444455555556666666666666665554443
No 249
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.29 E-value=1.1e+02 Score=31.21 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 312 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 312 kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
...+..|...+..+.+....+...+++.+.+|..|..-...+...+
T Consensus 65 t~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l 110 (140)
T PF10473_consen 65 TSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLL 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3334444444444444444444445555555555444444444433
No 250
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=72.39 E-value=2.3e+02 Score=34.41 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 397 KLEEELKKRDALIERLHEENEKLFDRLT 424 (956)
Q Consensus 397 kLeEELkkree~LErL~eE~ekL~qrL~ 424 (956)
.|.++|+.+.+.-.++..|..+|-..|.
T Consensus 169 ~L~~qi~~L~~~n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 169 TLAHEIRNLQQLNAQMAQEAINLTRALK 196 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5778888888888888888888888874
No 251
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=72.26 E-value=74 Score=35.95 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175 319 RNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 363 (956)
Q Consensus 319 q~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s 363 (956)
++.+.++.+-.+..+..+.++++-|+.|...|+.--.+|+.++.+
T Consensus 123 RkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqs 167 (305)
T PF15290_consen 123 RKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQS 167 (305)
T ss_pred HHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHH
Confidence 344445555555566666667777777666666555555555553
No 252
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=72.19 E-value=2.1e+02 Score=37.69 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=10.2
Q ss_pred HHHHHHhhhHHHHHHhc
Q 002175 541 EILAEIRDAVFAFIRKM 557 (956)
Q Consensus 541 ~~~~~~~~~~~~~~~~~ 557 (956)
.+++|+-.++=.++..|
T Consensus 628 ~~~~~~~e~~q~~~~~~ 644 (1041)
T KOG0243|consen 628 DILSEVLESLQQLQEVL 644 (1041)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666666543
No 253
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=72.10 E-value=86 Score=38.19 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Q 002175 257 DLKQEILGLRQALKEANDQCVLLYNEVQKAW 287 (956)
Q Consensus 257 ~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~ 287 (956)
.+..+|.+|-.++.....+......+.+...
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~ 447 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQ 447 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666655555444444444433
No 254
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=71.90 E-value=1.5e+02 Score=38.69 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 002175 404 KRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 404 kree~LErL~eE~ekL~qrL~eK 426 (956)
+++..+++..+...++..+|.+-
T Consensus 336 ~rq~~i~~~~k~i~~~q~el~~~ 358 (1072)
T KOG0979|consen 336 KRQKRIEKAKKMILDAQAELQET 358 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Confidence 34444555555555555555444
No 255
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=71.77 E-value=62 Score=35.23 Aligned_cols=20 Identities=45% Similarity=0.614 Sum_probs=15.7
Q ss_pred ccchhhHHHHH-----------HHHHHHhcc
Q 002175 517 SDGANKLLMLV-----------LAAVIKAGA 536 (956)
Q Consensus 517 ~~~~~~~~~~~-----------~~~~~~~~~ 536 (956)
.||+.-+++|| |-||++||-
T Consensus 115 ~~~~~~v~~la~~K~LPeKGKLLQAVmeAGP 145 (214)
T PF07795_consen 115 VDPADAVLELAKGKPLPEKGKLLQAVMEAGP 145 (214)
T ss_pred cChHHHHHHHHhCCCCCccchHHHHHHHhhh
Confidence 37777777774 889999995
No 256
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=71.56 E-value=91 Score=31.37 Aligned_cols=39 Identities=15% Similarity=0.311 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 315 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSI 353 (956)
Q Consensus 315 ~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~L 353 (956)
.+..++++..+..........++..+..+..|+.++.++
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333334444444444444444444443
No 257
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=71.30 E-value=0.83 Score=55.57 Aligned_cols=65 Identities=38% Similarity=0.394 Sum_probs=54.7
Q ss_pred CCcceEEEEEEEEeeccCCCceeeeeeEEeeccCCCccccCCCcchhhHhHHHHhhhHHHHHHHHHHhh
Q 002175 100 FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT 168 (956)
Q Consensus 100 SSRSH~IFtI~V~q~~~~~~~~~~SkLsfVDLAGSER~~kt~s~G~rlkEa~~INkSL~aLg~VI~aLs 168 (956)
++++|++|+.+............ ++.|||||+||. ....-|.++++..++|++|..++.++.++.
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 502 SSRSHSKFRDHLNGSNSSTKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hcccchhhhhcccchhhhhHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 78999999888866544333322 899999999999 899999999999999999999999988753
No 258
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=71.25 E-value=2.6e+02 Score=34.37 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=23.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLF 420 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~ 420 (956)
.++....-|-|.+....++|..+++|-+.|.
T Consensus 484 NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 484 NYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666667777888888888887777777665
No 259
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=71.05 E-value=2e+02 Score=32.99 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH
Q 002175 245 RKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK 285 (956)
Q Consensus 245 r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~ 285 (956)
.+.+.++..++..|..|+..|...|.........+..+++.
T Consensus 55 tkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES 95 (305)
T PF14915_consen 55 TKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIES 95 (305)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHH
Confidence 34555666677777777777776665544443334444443
No 260
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=70.97 E-value=1.6e+02 Score=31.95 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 332 QKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 332 lk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
++..+.+++..|-.|+.++-+++.++
T Consensus 62 L~~~LrEkEErILaLEad~~kWEqkY 87 (205)
T PF12240_consen 62 LKELLREKEERILALEADMTKWEQKY 87 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777777776644
No 261
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=70.64 E-value=2.4e+02 Score=36.24 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 391 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 391 ~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
..+..+.++-.-.-++.+++.|.-|.+++.+.+..-
T Consensus 1076 ~edrakqkei~k~L~ehelenLrnEieklndkIkdn 1111 (1424)
T KOG4572|consen 1076 CEDRAKQKEIDKILKEHELENLRNEIEKLNDKIKDN 1111 (1424)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 334455555555556778899999999999987654
No 262
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=70.55 E-value=43 Score=36.66 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=27.8
Q ss_pred CCccccchhhhccchhhHHHHHHHHHHHhccchhH--HHHHHHhhh
Q 002175 506 NPEQYDNLAVISDGANKLLMLVLAAVIKAGASREH--EILAEIRDA 549 (956)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 549 (956)
.|+..++.--|-+|--|..-.+|..|-=|-.|||. |-|.=|+-|
T Consensus 226 ~p~die~~~~~~~~~e~e~~i~lg~~~iaapsREdave~l~iik~a 271 (290)
T COG4026 226 APKDIEGQGYIYAEDEKEVEILLGTVYIAAPSREDAVEELEIIKEA 271 (290)
T ss_pred CchhccceeeeecccccccceeeeeeeeecCchHHHHHHHHHHHHH
Confidence 35555555566677777665666666667777776 555555544
No 263
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=70.40 E-value=1.3e+02 Score=34.42 Aligned_cols=31 Identities=35% Similarity=0.249 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 002175 401 ELKKRDALIERLHEENEKLFDRLTEKASSVS 431 (956)
Q Consensus 401 ELkkree~LErL~eE~ekL~qrL~eK~Ssgs 431 (956)
.|+++...-+.|..+..+|...|.++.+.+.
T Consensus 220 RLkKl~~eke~L~~qv~klk~qLee~~~~~~ 250 (302)
T PF09738_consen 220 RLKKLADEKEELLEQVRKLKLQLEERQSEGR 250 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444444444444444566666665533333
No 264
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=70.23 E-value=2.2e+02 Score=33.31 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=31.3
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 384 TTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 384 ~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
+-.+..........|.+.|..-+..+..|..-..+|...|..|
T Consensus 322 L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K 364 (384)
T PF03148_consen 322 LIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVK 364 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666777777777777777788888888888777776
No 265
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=69.77 E-value=1.9e+02 Score=32.41 Aligned_cols=10 Identities=30% Similarity=0.305 Sum_probs=3.4
Q ss_pred cCCCCCchhh
Q 002175 174 VPYENSMLTK 183 (956)
Q Consensus 174 VPYRdSKLTr 183 (956)
||.=+|.++.
T Consensus 26 vP~iesa~~~ 35 (297)
T PF02841_consen 26 VPCIESAWQA 35 (297)
T ss_dssp --BHHHHHHH
T ss_pred CCCchHHHHH
Confidence 4444444433
No 266
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=69.77 E-value=32 Score=38.07 Aligned_cols=52 Identities=17% Similarity=0.172 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 307 KHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 307 k~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
...+...++++.+.+..+++.+...++.++...+.+++.|+..+.+|-+++.
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888888877777777888888888888888877777764
No 267
>PHA01754 hypothetical protein
Probab=69.75 E-value=7.9 Score=34.06 Aligned_cols=49 Identities=37% Similarity=0.521 Sum_probs=41.9
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcccccchhhhhHHHHHhhhhhhhHHHHHHHHHhhccc
Q 002175 756 SEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDV 813 (956)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (956)
-|++-..|- -|.|.|-.|||||-|..-|-.-...|+|-| ||+..||.+-
T Consensus 12 tEltAKLyl----ALdDLamaLATee~EeVRkSevfqkA~EVi-----Kvvkemrr~~ 60 (69)
T PHA01754 12 TELTAKLYL----ALDDLTMALATEDKEEVRKSEVFQKALEVV-----KVVKEMRRLQ 60 (69)
T ss_pred HHHHHHHHH----HHHHHHHHHhhcchHHHHHHHHHHHHHHHH-----HHHHHHHHcc
Confidence 356666775 699999999999999999998899999988 8999999753
No 268
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=69.51 E-value=2.1e+02 Score=32.75 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHh
Q 002175 155 KSLSALGDVLSSL 167 (956)
Q Consensus 155 kSL~aLg~VI~aL 167 (956)
+|=..+..++..+
T Consensus 74 ~Sr~~~~~v~~~l 86 (362)
T TIGR01010 74 RSRDMLAALEKEL 86 (362)
T ss_pred hhHHHHHHHHhcC
Confidence 4555566666555
No 269
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=69.33 E-value=15 Score=46.12 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 002175 405 RDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 405 ree~LErL~eE~ekL~qrL~eK 426 (956)
+.+.++.|+.||++|..+|..-
T Consensus 564 k~~~l~~L~~En~~L~~~l~~l 585 (722)
T PF05557_consen 564 KKSTLEALQAENEDLLARLRSL 585 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999655
No 270
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=69.31 E-value=69 Score=29.70 Aligned_cols=94 Identities=22% Similarity=0.224 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHH
Q 002175 331 EQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE 410 (956)
Q Consensus 331 Elk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LE 410 (956)
.++.++......+..+..++.+++.-+.++....+.......--...... ...+.........+.++.++++++..++
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~--~~~~~~~~L~~~~~~~~~~i~~l~~~~~ 86 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQ--DKEEAIEELEERIEKLEKEIKKLEKQLK 86 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEE--EHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666665444422221111000000 0111122344444555555555555555
Q ss_pred HHHHHHHHHHHHhhhh
Q 002175 411 RLHEENEKLFDRLTEK 426 (956)
Q Consensus 411 rL~eE~ekL~qrL~eK 426 (956)
.+..+.+++...|.++
T Consensus 87 ~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 87 YLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555444
No 271
>PRK09343 prefoldin subunit beta; Provisional
Probab=68.16 E-value=79 Score=31.21 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC-CCCccccccccccccccChhHHHHH
Q 002175 319 RNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRS-EPMPAVSSVLRTTGDGMDSSAVSKK 397 (956)
Q Consensus 319 q~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~-es~~~s~s~~k~~ee~~d~s~l~kk 397 (956)
..++.......+.++.+++.....+..++.++.+.+.-+.++..-.+....... ++.-...+ ..+...+.....+.
T Consensus 6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd---~~e~~~~l~~r~E~ 82 (121)
T PRK09343 6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVD---KTKVEKELKERKEL 82 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhcc---HHHHHHHHHHHHHH
Confidence 333333334444455555555566666666666666666555553332111110 11000000 11112345555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 398 LEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 398 LeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
++.+++.++.+.+.+.+...++...|.+-
T Consensus 83 ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 83 LELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666555
No 272
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=67.64 E-value=2.9e+02 Score=34.99 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 248 LYEREKEIQDLKQEILGLRQALKEANDQ 275 (956)
Q Consensus 248 l~~~~~eI~~Lq~EI~~Lk~~L~~~~~q 275 (956)
.+-++.++..++.++...+.++.....+
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555444
No 273
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=67.39 E-value=2.2e+02 Score=32.05 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 248 LYEREKEIQDLKQEILGLRQALKEANDQ 275 (956)
Q Consensus 248 l~~~~~eI~~Lq~EI~~Lk~~L~~~~~q 275 (956)
+.++......|...+..|...+....+.
T Consensus 8 l~el~~h~~~L~~~N~~L~~~IqdtE~s 35 (258)
T PF15397_consen 8 LQELKKHEDFLTKLNKELIKEIQDTEDS 35 (258)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHhh
Confidence 3445555556666666666666555443
No 274
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.97 E-value=2e+02 Score=35.62 Aligned_cols=103 Identities=14% Similarity=0.136 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccc
Q 002175 314 QNAQLRNQVAQLLQ--------LEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTT 385 (956)
Q Consensus 314 e~~qLq~ql~~l~~--------~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ 385 (956)
++..++.++.++.. ...++..++++..+.+..|+..++++..+-. ..... ...-+.-+-+++
T Consensus 438 Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~---R~~~~-------~~~d~~kIK~LE 507 (852)
T KOG4787|consen 438 ELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQV---RDGEI-------QYSDELKIKILE 507 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHHH---hhhhh-------ccchHHHHHHHH
Confidence 44445555544442 2234666777777777777777777665211 11111 000111122344
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 386 GDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 386 ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.+..-...+..+|..|++-+.....++..+++-|.+++.+-
T Consensus 508 ~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~~~~t 548 (852)
T KOG4787|consen 508 LEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAAVETQT 548 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHHHhhhH
Confidence 44455556666666666666666666777777777766554
No 275
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=66.89 E-value=1.5e+02 Score=29.91 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 245 RKELYEREKEIQDLKQEILGLRQALKEANDQC 276 (956)
Q Consensus 245 r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~ 276 (956)
...+..+..++..|...+..|+.++.......
T Consensus 58 ~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~ 89 (151)
T PF11559_consen 58 SDKLRRLRSDIERLQNDVERLKEQLEELEREL 89 (151)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666554443
No 276
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=66.71 E-value=1.9 Score=53.84 Aligned_cols=34 Identities=35% Similarity=0.369 Sum_probs=0.0
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 388 GMDSSAVSKKLEEELKKRDALIERLHEENEKLFD 421 (956)
Q Consensus 388 ~~d~s~l~kkLeEELkkree~LErL~eE~ekL~q 421 (956)
..+......+++.++..+.++++.+.++++++..
T Consensus 379 l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~ 412 (713)
T PF05622_consen 379 LSEESRRADKLEFENKQLEEKLEALEEEKERLQE 412 (713)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666666666666665543
No 277
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.54 E-value=2.9e+02 Score=33.36 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 394 VSKKLEEELKKRDALIERLHEENEKLFDRL 423 (956)
Q Consensus 394 l~kkLeEELkkree~LErL~eE~ekL~qrL 423 (956)
..+|.++++-+....-.+|+.+.+.+..+|
T Consensus 397 niRKq~~DI~Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 397 NIRKQEQDIVKILEETRELQKQENSESEAL 426 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 278
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=66.49 E-value=2.8e+02 Score=34.72 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=10.0
Q ss_pred CCCCCCHHHhHHHHHHH
Q 002175 202 CPNAANMSETLSSLNFS 218 (956)
Q Consensus 202 SPs~~~~eETLsTLrFA 218 (956)
+|....|.|-+.-|.-.
T Consensus 103 ~~~~~~yQerLaRLe~d 119 (861)
T KOG1899|consen 103 CPEYPEYQERLARLEMD 119 (861)
T ss_pred CCcchHHHHHHHHHhcc
Confidence 35556677766655543
No 279
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=65.98 E-value=3.2e+02 Score=34.65 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 304 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360 (956)
Q Consensus 304 Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el 360 (956)
+......+++....|..+...+....+++........+++...+.+...|+.++...
T Consensus 153 l~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~ 209 (739)
T PF07111_consen 153 LSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKT 209 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444444433333333344444444444444444433
No 280
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=65.96 E-value=1.8e+02 Score=35.48 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=11.7
Q ss_pred CCCCccccccCCCCCCC
Q 002175 445 NVQPRDMARNDNNNKGL 461 (956)
Q Consensus 445 ~~q~~~~~r~~~~~~~~ 461 (956)
.+-++=+||.+-|....
T Consensus 214 ~~kgriigreGrnir~~ 230 (514)
T TIGR03319 214 EMKGRIIGREGRNIRAL 230 (514)
T ss_pred hhhccccCCCcchHHHH
Confidence 56777778777776544
No 281
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=65.67 E-value=1.8e+02 Score=30.42 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 305 ADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 305 eek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
++.++...++-..++.++.-+.+.+..++..-++.+..+..++..++..+.-.
T Consensus 76 E~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~ 128 (159)
T PF05384_consen 76 EEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLV 128 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666777777777777777777777777777777776666665544
No 282
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=65.65 E-value=1.9e+02 Score=30.86 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 316 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 316 ~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
.+|+.+...+....+....++...+..+..+++++...+.+.+
T Consensus 141 ~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 141 LELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444555555555544443
No 283
>PF13514 AAA_27: AAA domain
Probab=65.62 E-value=3e+02 Score=36.58 Aligned_cols=35 Identities=34% Similarity=0.418 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 392 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 392 s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
......++.++..++.+++++.++...+..+|..-
T Consensus 895 ~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l 929 (1111)
T PF13514_consen 895 EAELEELEEELEELEEELEELQEERAELEQELEAL 929 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666666666666666666554
No 284
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=65.49 E-value=2.2e+02 Score=31.92 Aligned_cols=14 Identities=7% Similarity=0.321 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 002175 346 LQAKINSIESQRNE 359 (956)
Q Consensus 346 LqeEik~LE~qL~e 359 (956)
.+.+...++.+++.
T Consensus 282 ~~~~~~~l~~ei~~ 295 (297)
T PF02841_consen 282 FQEEAEKLQKEIQD 295 (297)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 285
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.13 E-value=4.2e+02 Score=34.52 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 401 ELKKRDALIERLHEENEKLFDRLT 424 (956)
Q Consensus 401 ELkkree~LErL~eE~ekL~qrL~ 424 (956)
.+......+++..++...+...+.
T Consensus 418 ~~~~~~~~l~~~~~~~~~~~~~~~ 441 (908)
T COG0419 418 ELEELERELEELEEEIKKLEEQIN 441 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333
No 286
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=64.76 E-value=1.1e+02 Score=38.07 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=8.0
Q ss_pred ccchhhhhhhhcc
Q 002175 639 KSKLSSVVLRMRG 651 (956)
Q Consensus 639 ~~~~~~~~~~~~~ 651 (956)
++-+-.++.|||-
T Consensus 489 ~rglrnifgKlrR 501 (861)
T KOG1899|consen 489 RRGLRNIFGKLRR 501 (861)
T ss_pred hhHHHHHHHHhhh
Confidence 3446667777763
No 287
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.32 E-value=3.1e+02 Score=34.75 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=28.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 237 WRDIANDARKELYEREKEIQDLKQEILGLRQALKEA 272 (956)
Q Consensus 237 ~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~ 272 (956)
.....++++++.++...++.++..+++++-..+...
T Consensus 108 l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 108 LKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345667778888888888888888888888877665
No 288
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=64.29 E-value=46 Score=36.46 Aligned_cols=42 Identities=12% Similarity=0.355 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 316 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 316 ~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
..++.+++++....+++...+.+++.+.+..++.++.++..+
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555555555555544443
No 289
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=63.49 E-value=1.5e+02 Score=36.30 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=12.9
Q ss_pred hhccchhhHHHHHHHHHHH
Q 002175 515 VISDGANKLLMLVLAAVIK 533 (956)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~ 533 (956)
..|.|-=+.+||.++.|..
T Consensus 440 ~lSgGe~~rv~la~~l~~~ 458 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLS 458 (563)
T ss_pred hcCHhHHHHHHHHHHHhhC
Confidence 4577777777777766653
No 290
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=63.07 E-value=2.4e+02 Score=31.00 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 311 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 311 ~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
++.....++..+.........++..+...+.+|..+..+...+.....
T Consensus 97 le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 97 LEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444555555555555555555555544443
No 291
>PRK04406 hypothetical protein; Provisional
Probab=62.31 E-value=60 Score=29.74 Aligned_cols=33 Identities=12% Similarity=0.372 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002175 395 SKKLEEELKKRDALIERLHEENEKLFDRLTEKA 427 (956)
Q Consensus 395 ~kkLeEELkkree~LErL~eE~ekL~qrL~eK~ 427 (956)
...|.+.+..+..+|.+|..+...|.++|.+..
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 335777777888888888888889999998764
No 292
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=62.28 E-value=2.3e+02 Score=30.66 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002175 252 EKEIQDLKQEILGLRQAL 269 (956)
Q Consensus 252 ~~eI~~Lq~EI~~Lk~~L 269 (956)
...|..|+.++..-+..+
T Consensus 10 nrri~~leeele~aqErl 27 (205)
T KOG1003|consen 10 NRRIQLLEEELDRAQERL 27 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 293
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=62.10 E-value=1.3e+02 Score=36.03 Aligned_cols=37 Identities=24% Similarity=0.185 Sum_probs=26.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.......+|-+-+......++++-+++.+|..+|..-
T Consensus 428 ~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerL 464 (554)
T KOG4677|consen 428 ALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERL 464 (554)
T ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3444556777778888888888888888886655544
No 294
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.04 E-value=3.9e+02 Score=33.13 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 328 LEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 359 (956)
Q Consensus 328 ~eeElk~qlqe~e~eIe~LqeEik~LE~qL~e 359 (956)
.+.+.+.+++....+.+.|+.-++-++...++
T Consensus 656 AErdFk~Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 656 AERDFKKELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666665554
No 295
>PRK12704 phosphodiesterase; Provisional
Probab=61.74 E-value=2.7e+02 Score=34.13 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=19.5
Q ss_pred CCCCCccccccCCCCCCCCCccCCCCcccccCCCeEEE
Q 002175 444 VNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVAL 481 (956)
Q Consensus 444 ~~~q~~~~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 481 (956)
-.+-++=+||.+-|....-. .-=--+-.|-|.+++.|
T Consensus 219 d~mkgriigreGrnir~~e~-~tgvd~iiddtp~~v~l 255 (520)
T PRK12704 219 DEMKGRIIGREGRNIRALET-LTGVDLIIDDTPEAVIL 255 (520)
T ss_pred chhhcceeCCCcchHHHHHH-HhCCeEEEcCCCCeEEE
Confidence 36777778888777664431 10112234555555544
No 296
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=61.46 E-value=1.3e+02 Score=32.93 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 311 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 311 ~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
.+++.+.....++........++.+.+..+.+...|-++...|+.++
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33444444444444445555566666666666667777766666665
No 297
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=61.38 E-value=66 Score=35.12 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 401 ELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 401 ELkkree~LErL~eE~ekL~qrL~eK 426 (956)
+.+....+-.++-+|+.+|.+++..+
T Consensus 187 q~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 187 QSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 33444445566667777777776654
No 298
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=61.24 E-value=2e+02 Score=30.60 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 312 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 359 (956)
Q Consensus 312 kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~e 359 (956)
...|..|+.++.+.....+.+...+.........+.+++..-+.....
T Consensus 80 ~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ 127 (182)
T PF15035_consen 80 AQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWRE 127 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666665555554443
No 299
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=61.11 E-value=3.3e+02 Score=32.71 Aligned_cols=10 Identities=20% Similarity=0.112 Sum_probs=5.2
Q ss_pred CcCCCCCchh
Q 002175 173 IVPYENSMLT 182 (956)
Q Consensus 173 ~VPYRdSKLT 182 (956)
..|||++-.-
T Consensus 83 ~~p~r~~~~~ 92 (447)
T KOG2751|consen 83 SPPVRDSDTE 92 (447)
T ss_pred cCcccccccc
Confidence 4566665433
No 300
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=60.96 E-value=3.6e+02 Score=36.57 Aligned_cols=20 Identities=55% Similarity=0.755 Sum_probs=17.2
Q ss_pred hcchhhhhhhhccCChhhhHHHHHHHHhhcc
Q 002175 677 ATGNKALAALFVHTPAGELQRQIRSWLAENF 707 (956)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (956)
.-|-|.||+|- ||--|||+|
T Consensus 1185 SAGQKvLAsli-----------IRLALAEtf 1204 (1294)
T KOG0962|consen 1185 SAGQKVLASLI-----------IRLALAETF 1204 (1294)
T ss_pred cchHHHHHHHH-----------HHHHHHHHH
Confidence 45888999986 899999999
No 301
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.88 E-value=3.9e+02 Score=32.77 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002175 394 VSKKLEEELKKRDALIERLHEENEKLFDRLTEKAS 428 (956)
Q Consensus 394 l~kkLeEELkkree~LErL~eE~ekL~qrL~eK~S 428 (956)
+.......-++...-|.+|+.|.+.-+..+..-+|
T Consensus 390 lk~~f~a~q~K~a~tikeL~~El~~yrr~i~~~~s 424 (613)
T KOG0992|consen 390 LKVQFTAKQEKHAETIKELEIELEEYRRAILRNAS 424 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 33344444455555677788888888888887764
No 302
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=60.86 E-value=2.6e+02 Score=30.76 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHH
Q 002175 246 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK 298 (956)
Q Consensus 246 ~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~ 298 (956)
..+..++.++..|..++..|..+..........+........+...+|...+.
T Consensus 45 ~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~ 97 (264)
T PF06008_consen 45 QQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQ 97 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666555554444444444444444444444333
No 303
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=60.75 E-value=34 Score=41.17 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 314 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 314 e~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
...+|+++++.++++.+.+..+.++.+.+|+.|+.+++.|+.+++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666555555667777778888899999999988884
No 304
>PRK00106 hypothetical protein; Provisional
Probab=60.67 E-value=4.1e+02 Score=32.89 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=22.4
Q ss_pred CCCCccccccCCCCCCCCCccCCCCcccccCCCeEEEecc
Q 002175 445 NVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKS 484 (956)
Q Consensus 445 ~~q~~~~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 484 (956)
.+-++=+||.+-|....-. ..-.-+-.|-|.++|.|--.
T Consensus 235 emkGriIGreGrNir~~E~-~tGvdliiddtp~~v~lS~f 273 (535)
T PRK00106 235 NMKGRIIGREGRNIRTLES-LTGIDVIIDDTPEVVVLSGF 273 (535)
T ss_pred HhhcceeCCCcchHHHHHH-HhCceEEEcCCCCeEEEeCC
Confidence 5677778887777654331 11113446777777766433
No 305
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=60.47 E-value=1.9 Score=53.76 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=8.6
Q ss_pred CCCCCCHHHhHHHHHHHH
Q 002175 202 CPNAANMSETLSSLNFSS 219 (956)
Q Consensus 202 SPs~~~~eETLsTLrFAs 219 (956)
+|....|=+.+.+|.+..
T Consensus 125 c~~ke~yI~~I~~Ld~~~ 142 (713)
T PF05622_consen 125 CENKEEYIQRIMELDEST 142 (713)
T ss_dssp SSTHHHHHHHHHHS-HHH
T ss_pred CccHHHHHHHHHCCCHHH
Confidence 344445555555555543
No 306
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=60.05 E-value=3.1e+02 Score=34.73 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 252 EKEIQDLKQEILGLRQALKEANDQ 275 (956)
Q Consensus 252 ~~eI~~Lq~EI~~Lk~~L~~~~~q 275 (956)
.+-+.-|.+++..+++++...+..
T Consensus 266 ~~a~~fL~~qL~~l~~~L~~aE~~ 289 (726)
T PRK09841 266 SQSLEFLQRQLPEVRSELDQAEEK 289 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666665444
No 307
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=59.96 E-value=2.6e+02 Score=30.41 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=19.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTE 425 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~e 425 (956)
.+..+.++...++..+++.|....-....|...|.-
T Consensus 151 ei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQ 186 (207)
T PF05010_consen 151 EIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQ 186 (207)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666665554444444444433
No 308
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.83 E-value=3.1e+02 Score=35.32 Aligned_cols=38 Identities=21% Similarity=0.425 Sum_probs=25.3
Q ss_pred hhccCC-hhhhHHHHHHHHhhcccccccccCCCCCCccc
Q 002175 686 LFVHTP-AGELQRQIRSWLAENFEFLSVTGDDASGGTTG 723 (956)
Q Consensus 686 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (956)
.+||-- -|-|++.|+.||..+=...+..-....-|..|
T Consensus 737 ~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~a~~~~GG~G 775 (782)
T PRK00409 737 LIIHGKGTGKLRKGVQEFLKKHPSVKSFRDAPPNEGGFG 775 (782)
T ss_pred EEEcCCChhHHHHHHHHHHcCCCceeeeeecCcccCCCe
Confidence 456643 28999999999998766555555544444444
No 309
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.82 E-value=1.3e+02 Score=26.80 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 321 QVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360 (956)
Q Consensus 321 ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el 360 (956)
.+............++++.+.....|..++..|+.+++++
T Consensus 19 EL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444455666677777777777777777777654
No 310
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=59.50 E-value=2.4e+02 Score=36.08 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=20.7
Q ss_pred HHHHHhhhhhhhHHHHHHHHHhhccceee
Q 002175 788 VSKLRSALESVDHRRRKVLQQMRSDVALL 816 (956)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (956)
-.|||.-||+.+..|-.--.|+|.--+-+
T Consensus 986 nekLr~rL~q~eaeR~~~reqlrQ~Q~Q~ 1014 (1480)
T COG3096 986 NEKLRQRLEQAEAERTRAREQLRQHQAQL 1014 (1480)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999988876666666544333
No 311
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=59.12 E-value=2.2e+02 Score=29.24 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002175 317 QLRNQVAQLLQLEQEQKMQI 336 (956)
Q Consensus 317 qLq~ql~~l~~~eeElk~ql 336 (956)
.++.++..+..........+
T Consensus 91 ~~q~kv~eLE~~~~~~~~~l 110 (140)
T PF10473_consen 91 KKQEKVSELESLNSSLENLL 110 (140)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 33344444444433333333
No 312
>PLN03188 kinesin-12 family protein; Provisional
Probab=59.07 E-value=6.2e+02 Score=34.47 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 295 SDLKSENYMLADKHKIEKEQNAQLRNQVAQ----------LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 359 (956)
Q Consensus 295 ~eL~~e~~~Leek~k~~kee~~qLq~ql~~----------l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~e 359 (956)
.++.+....+..+++...+-+..+++.-.. ...+..++-.---+++++..-|.++++.|+.||..
T Consensus 1117 a~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrd 1191 (1320)
T PLN03188 1117 ADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLRD 1191 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 344444455555555555544444433111 11122223333345677788888888888888863
No 313
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=58.91 E-value=2.6e+02 Score=32.74 Aligned_cols=116 Identities=14% Similarity=0.172 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----cccccc-CCCCccccc--ccc
Q 002175 311 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSE----VRSTIR-SEPMPAVSS--VLR 383 (956)
Q Consensus 311 ~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~----~rs~~~-~es~~~s~s--~~k 383 (956)
..+-+..|...+.....-..++...+.+...+|..|......++..+.....-.. ...... ........+ -..
T Consensus 41 q~~~~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~e 120 (384)
T PF03148_consen 41 QYDSNKRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKE 120 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHH
Confidence 3445566777777777777778888888888888888888888887776554211 100000 000011111 111
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 384 TTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 384 ~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
+.++..-+....+.|+..+.+..+++..+.+-..+|...+.+|
T Consensus 121 L~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK 163 (384)
T PF03148_consen 121 LLKEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDK 163 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556667778888889999999988888888888888888
No 314
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=58.88 E-value=3.4e+02 Score=31.37 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 331 EQKMQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 331 Elk~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
+++.++++...+...|+.++...+-.-+
T Consensus 63 dYqrq~~elneEkrtLeRELARaKV~aN 90 (351)
T PF07058_consen 63 DYQRQVQELNEEKRTLERELARAKVSAN 90 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4666666666777777777766655443
No 315
>PRK10869 recombination and repair protein; Provisional
Probab=58.36 E-value=1.5e+02 Score=36.55 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=11.8
Q ss_pred hhccchhhHHHHHHHHHH
Q 002175 515 VISDGANKLLMLVLAAVI 532 (956)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~ 532 (956)
..|-|-=..+||.++.|.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~ 447 (553)
T PRK10869 430 VASGGELSRIALAIQVIT 447 (553)
T ss_pred hCCHHHHHHHHHHHHHHh
Confidence 345666677777776665
No 316
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]
Probab=58.28 E-value=3.5 Score=46.08 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=22.3
Q ss_pred HHHhhhCCCCccccchhhhccchhhHH
Q 002175 498 LTAALNDFNPEQYDNLAVISDGANKLL 524 (956)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (956)
-.||+.--||.+|| ||+-|||||.=
T Consensus 189 ylAai~~Idpt~YE--AA~vDGA~rwq 213 (309)
T COG4209 189 YLAAIAGIDPTLYE--AAMVDGASRWQ 213 (309)
T ss_pred HHHHHHcCCHHHHH--HHHcccHHHHH
Confidence 35899999999999 89999999963
No 317
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=58.03 E-value=2.3e+02 Score=29.28 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHH
Q 002175 318 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKK 397 (956)
Q Consensus 318 Lq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kk 397 (956)
+......+..........+......+.....+...++.++..+......- ........-.+
T Consensus 89 ~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~-------------------~~P~ll~Dy~~ 149 (177)
T PF13870_consen 89 LSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLL-------------------GVPALLRDYDK 149 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------------CCcHHHHHHHH
Confidence 33333334444444444445555555555555555555555544433320 00122223456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 398 LEEELKKRDALIERLHEENEKLFDRL 423 (956)
Q Consensus 398 LeEELkkree~LErL~eE~ekL~qrL 423 (956)
..+++..++..++.+....+.+..++
T Consensus 150 ~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 150 TKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66677777777777777766666554
No 318
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=57.89 E-value=2.2e+02 Score=28.99 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 313 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 313 ee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
..+..|+..+.......+.....+++++..++.+..++++..........
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~ 90 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQ 90 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhc
Confidence 33444555555555444555556666666666666666666666444333
No 319
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=57.68 E-value=2.8e+02 Score=30.09 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002175 394 VSKKLEEELKKRDALIERLHEENEKLFDRLTE 425 (956)
Q Consensus 394 l~kkLeEELkkree~LErL~eE~ekL~qrL~e 425 (956)
...+|+.++..++..+.....++..+-+.|+.
T Consensus 166 sVakLeke~DdlE~kl~~~k~ky~~~~~eLD~ 197 (205)
T KOG1003|consen 166 RVAKLEKERDDLEEKLEEAKEKYEEAKKELDE 197 (205)
T ss_pred HHHHHcccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455566666666665555555555555443
No 320
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=57.56 E-value=4.3e+02 Score=32.19 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 391 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 391 ~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.......+.+++..++.+++++..|...+...+...
T Consensus 279 l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~ 314 (511)
T PF09787_consen 279 LKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGE 314 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334455566666666666666666666665555443
No 321
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=57.38 E-value=3.7e+02 Score=31.42 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=11.2
Q ss_pred HhhhHHHHHHHHHHhhc
Q 002175 153 VMKSLSALGDVLSSLTS 169 (956)
Q Consensus 153 INkSL~aLg~VI~aLs~ 169 (956)
|=+|=..+.+|+..|.-
T Consensus 75 il~S~~v~~~Vi~~l~l 91 (444)
T TIGR03017 75 IINSDRVAKKVVDKLKL 91 (444)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 33466677788887753
No 322
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=57.26 E-value=2.7e+02 Score=31.74 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002175 312 KEQNAQLRNQVAQLLQL 328 (956)
Q Consensus 312 kee~~qLq~ql~~l~~~ 328 (956)
..++.+|++-++-+..-
T Consensus 123 RkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 123 RKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33444444444444433
No 323
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.21 E-value=1.6e+02 Score=28.31 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=23.6
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 389 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 389 ~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.+.....+.++..++.++.+++.+.+...++...|.+.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666666666666666666666666543
No 324
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=57.20 E-value=5.6e+02 Score=33.39 Aligned_cols=10 Identities=10% Similarity=0.006 Sum_probs=5.1
Q ss_pred cceEEEEEEEE
Q 002175 102 VSHLIIMIHIY 112 (956)
Q Consensus 102 RSH~IFtI~V~ 112 (956)
++ +.+.+.+.
T Consensus 70 ~~-~~V~l~F~ 79 (908)
T COG0419 70 KS-ASVELEFE 79 (908)
T ss_pred cc-EEEEEEEE
Confidence 44 55555554
No 325
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=56.98 E-value=2.7e+02 Score=29.63 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 248 LYEREKEIQDLKQEILGLRQALKEA 272 (956)
Q Consensus 248 l~~~~~eI~~Lq~EI~~Lk~~L~~~ 272 (956)
+..+..++..++.++..++..+...
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555554443
No 326
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=56.92 E-value=1.9e+02 Score=27.87 Aligned_cols=28 Identities=11% Similarity=0.337 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 333 KMQIQQRDSTIKTLQAKINSIESQRNEA 360 (956)
Q Consensus 333 k~qlqe~e~eIe~LqeEik~LE~qL~el 360 (956)
...+...++++..++.++.+++.++.++
T Consensus 80 e~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 80 ELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555443
No 327
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=56.45 E-value=95 Score=31.02 Aligned_cols=86 Identities=17% Similarity=0.124 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 339 RDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEK 418 (956)
Q Consensus 339 ~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ek 418 (956)
.-...+.++..+++.+.-++++..-.+.-...+..-..... ....+...+.......++-+++.++.+.+.+.++.++
T Consensus 25 ~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk--~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~e 102 (119)
T COG1382 25 VILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVK--VSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEE 102 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555544332222211100000 0111223455566666777777777777777777777
Q ss_pred HHHHhhhh
Q 002175 419 LFDRLTEK 426 (956)
Q Consensus 419 L~qrL~eK 426 (956)
|...|-.+
T Consensus 103 Lq~~i~~~ 110 (119)
T COG1382 103 LQSEIQKA 110 (119)
T ss_pred HHHHHHHH
Confidence 77777666
No 328
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=56.35 E-value=4.8e+02 Score=32.32 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 002175 404 KRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 404 kree~LErL~eE~ekL~qrL~eK 426 (956)
+-++.++++......+.+.+...
T Consensus 414 ~Are~l~~~~~~l~eikR~mek~ 436 (570)
T COG4477 414 EARENLERLKSKLHEIKRYMEKS 436 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344455555555555554444
No 329
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=56.02 E-value=69 Score=39.23 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 002175 315 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSE 365 (956)
Q Consensus 315 ~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~ 365 (956)
+++|+..+++.+...+++|..+.+.+.++..|+.+++..+.+++++...+.
T Consensus 102 rqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 102 RQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 445556666666667777777778888888888888888888887776544
No 330
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.00 E-value=2.6e+02 Score=29.17 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=6.4
Q ss_pred HHHHHHHHhcc
Q 002175 213 SSLNFSSRARS 223 (956)
Q Consensus 213 sTLrFAsrAK~ 223 (956)
.|+.|..+...
T Consensus 3 DT~~~v~~Le~ 13 (177)
T PF07798_consen 3 DTHKFVKRLEA 13 (177)
T ss_pred cHHHHHHHHHH
Confidence 46666666543
No 331
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=55.79 E-value=4.6e+02 Score=32.00 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=12.0
Q ss_pred cCccccccccCcchhhhhcc
Q 002175 582 RSPELQSIMVSPVECFLEKS 601 (956)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~ 601 (956)
++|+. -|..-|+|-|+--+
T Consensus 306 ~t~Df-VlMFiP~E~af~~A 324 (475)
T PRK10361 306 RTLDY-VLMFIPVEPAFLLA 324 (475)
T ss_pred CCCCE-EEEeeccHHHHHHH
Confidence 45654 36677888887433
No 332
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=55.60 E-value=2.7e+02 Score=34.31 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 002175 343 IKTLQAKINSIESQRNEALHSSEV 366 (956)
Q Consensus 343 Ie~LqeEik~LE~qL~el~~s~~~ 366 (956)
...++++++.+++.+.......+.
T Consensus 349 vr~~e~eL~el~~~~~~i~~~~~~ 372 (570)
T COG4477 349 VRKFEKELKELESVLDEILENIEA 372 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445556666666665555444333
No 333
>PF13514 AAA_27: AAA domain
Probab=55.49 E-value=6.5e+02 Score=33.62 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=24.3
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 389 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 389 ~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.........+...+......+++...+.+.+..++..-
T Consensus 349 ~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l 386 (1111)
T PF13514_consen 349 RELLQEREQLEQALAQARRELEEAERELEQLQAELAAL 386 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444555666666666677777777777777776554
No 334
>PRK11519 tyrosine kinase; Provisional
Probab=55.45 E-value=5.4e+02 Score=32.67 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=11.4
Q ss_pred CeEEEEEeeCCCCCCHHHhHHHH
Q 002175 193 SKTLMIVNICPNAANMSETLSSL 215 (956)
Q Consensus 193 SkT~mIv~VSPs~~~~eETLsTL 215 (956)
+.++-|-.-++++.-....++++
T Consensus 227 S~ii~Is~~~~dP~~Aa~iaN~l 249 (719)
T PRK11519 227 TGVLSLTYTGEDREQIRDILNSI 249 (719)
T ss_pred ceEEEEEEEcCCHHHHHHHHHHH
Confidence 45555555555554444444443
No 335
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=54.70 E-value=2.9e+02 Score=29.34 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 002175 403 KKRDALIERLHEENEKLFDRLT 424 (956)
Q Consensus 403 kkree~LErL~eE~ekL~qrL~ 424 (956)
.+..+.|.+|.-||+.|++-|.
T Consensus 156 ~~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 156 QEEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred HhHHHHHHHHHHHHHHHHHHHh
Confidence 4455667888899999888764
No 336
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.54 E-value=1.6e+02 Score=35.69 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 398 LEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 398 LeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
+.++...++++++++......|.++|+..
T Consensus 114 ~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 114 LTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444445555555555666666543
No 337
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=54.23 E-value=3e+02 Score=29.29 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002175 250 EREKEIQDLKQEILGLRQALKEANDQCV 277 (956)
Q Consensus 250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~ 277 (956)
.-..+|..|+.|+.+|+..+.+......
T Consensus 67 ~En~qi~~Lq~EN~eL~~~leEhq~ale 94 (181)
T PF05769_consen 67 QENRQIRQLQQENRELRQSLEEHQSALE 94 (181)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999988887655443
No 338
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=54.13 E-value=1.2e+02 Score=36.52 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 335 QIQQRDSTIKTLQAKINSIESQRNE 359 (956)
Q Consensus 335 qlqe~e~eIe~LqeEik~LE~qL~e 359 (956)
+.++.+.+++.++..+..|..++..
T Consensus 117 ~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 117 EIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444455555555566666543
No 339
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=53.50 E-value=1.3e+02 Score=27.02 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 307 KHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 354 (956)
Q Consensus 307 k~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE 354 (956)
.....+.+|..|+.+......+...+..+++....+++.+-..++.|+
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 334455666667777766666666666666666666666666555544
No 340
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=53.28 E-value=1.9e+02 Score=33.57 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 392 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 392 s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.+..+++++++++++..+. ++.+.|+.+
T Consensus 67 ~~~i~~L~~~Ik~r~~~l~-------DmEa~LPkk 94 (330)
T PF07851_consen 67 RELIEKLEEDIKERRCQLF-------DMEAFLPKK 94 (330)
T ss_pred HHHHHHHHHHHHHHHhhHH-------HHHhhCCCC
Confidence 3344455555554444443 444555554
No 341
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.07 E-value=70 Score=38.60 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=12.6
Q ss_pred hhhhcHHHHHHHHHHHH
Q 002175 838 ASLISLDGILNQVKDAV 854 (956)
Q Consensus 838 ~~~~~~~~~~~~~~~~~ 854 (956)
..-|+-|+++||+.++.
T Consensus 443 ~~~~~~d~~~~~~~~l~ 459 (475)
T PRK13729 443 LNGFNTDQMLKQLGNLN 459 (475)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 34578888888888764
No 342
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=53.05 E-value=6e+02 Score=32.47 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 397 KLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 397 kLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
...++..++...++++..+++=|.+++...
T Consensus 636 ~~~~e~~rl~~rlqelerdkNl~l~rl~~~ 665 (739)
T PF07111_consen 636 ARKEEGQRLTQRLQELERDKNLMLQRLLAV 665 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 345556667777888888888777666555
No 343
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=52.87 E-value=1.9e+02 Score=32.20 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 301 NYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ 356 (956)
Q Consensus 301 ~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~q 356 (956)
..+++..++.+.++++.|+.+.+.+....+.+-.+.++...+++.+.+++-+++.+
T Consensus 92 m~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 33344444555556666666666665555556666666666666666666666543
No 344
>PLN02939 transferase, transferring glycosyl groups
Probab=52.85 E-value=6.2e+02 Score=33.59 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 002175 343 IKTLQAKINSIESQRNEAL 361 (956)
Q Consensus 343 Ie~LqeEik~LE~qL~el~ 361 (956)
.+.|++++.+|+..+++..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~ 344 (977)
T PLN02939 326 NQDLRDKVDKLEASLKEAN 344 (977)
T ss_pred chHHHHHHHHHHHHHHHhh
Confidence 3456666666666655443
No 345
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=52.73 E-value=74 Score=28.44 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 313 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 361 (956)
Q Consensus 313 ee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~ 361 (956)
+.+..|..++.......+++...+-..+.+|..|+..++.|..++....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666666777777777777777777777777776554
No 346
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=52.37 E-value=2.9e+02 Score=32.16 Aligned_cols=54 Identities=17% Similarity=0.256 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002175 311 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 364 (956)
Q Consensus 311 ~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~ 364 (956)
.-.++.+|..+..++......+...+..++..+..|...++.+.....-+....
T Consensus 99 EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 99 ELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 334566677777777777777777777777777777777777766655544433
No 347
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=52.23 E-value=1.7e+02 Score=29.78 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 397 KLEEELKKRDALIERLHEENEKLFDR 422 (956)
Q Consensus 397 kLeEELkkree~LErL~eE~ekL~qr 422 (956)
.....+..++..|++|..||+.++.=
T Consensus 72 ~~~~~l~~re~~i~rL~~ENe~lR~W 97 (135)
T TIGR03495 72 QARALLAQREQRIERLKRENEDLRRW 97 (135)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 45566777788888888888887654
No 348
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=51.87 E-value=2.2e+02 Score=27.11 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 333 KMQIQQRDSTIKTLQAKINSIESQRNE 359 (956)
Q Consensus 333 k~qlqe~e~eIe~LqeEik~LE~qL~e 359 (956)
...+...++.++.+++++.+++.++.+
T Consensus 76 e~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 76 ELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 349
>PRK04406 hypothetical protein; Provisional
Probab=51.53 E-value=1.4e+02 Score=27.34 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 311 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 361 (956)
Q Consensus 311 ~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~ 361 (956)
+...+..|..++.......++++..+-+.+..|..|+.+++.|..++.+..
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334455566666666666666777777777777888888877777776544
No 350
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=51.17 E-value=4.1e+02 Score=30.20 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHH
Q 002175 251 REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKS 299 (956)
Q Consensus 251 ~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~ 299 (956)
+..-|+..+.++++++.+|+........+...+++.....+..++++..
T Consensus 110 lk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~ 158 (338)
T KOG3647|consen 110 LKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEA 158 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666777777777766555555555544444333344444433
No 351
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=50.77 E-value=3.6e+02 Score=34.66 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=23.6
Q ss_pred hhccCC-hhhhHHHHHHHHhhcccccccccCC-CCCC
Q 002175 686 LFVHTP-AGELQRQIRSWLAENFEFLSVTGDD-ASGG 720 (956)
Q Consensus 686 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 720 (956)
..||-- .|-|++.++.||..+=...+..-+. .-||
T Consensus 726 ~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~a~~~~GG 762 (771)
T TIGR01069 726 LIIHGKGSGKLRKGVQELLKNHPKVKSFRDAPPNDGG 762 (771)
T ss_pred EEEcCCChhHHHHHHHHHhcCCcceeeecccCcccCC
Confidence 355632 3889999999999976666664333 3344
No 352
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=50.54 E-value=6.2e+02 Score=31.90 Aligned_cols=12 Identities=42% Similarity=0.637 Sum_probs=6.9
Q ss_pred ccccccCCCCCC
Q 002175 709 FLSVTGDDASGG 720 (956)
Q Consensus 709 ~~~~~~~~~~~~ 720 (956)
||+.||....+|
T Consensus 526 ~l~~~~~~~~~g 537 (611)
T KOG2398|consen 526 ILNLTGVGSSRG 537 (611)
T ss_pred cccccccccCCC
Confidence 566666655544
No 353
>PRK10698 phage shock protein PspA; Provisional
Probab=50.39 E-value=3.7e+02 Score=29.28 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 313 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 313 ee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
+....|+.++.........++.++...+.+|...+.+...|..+.+
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~ 144 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQ 144 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444333
No 354
>PRK02119 hypothetical protein; Provisional
Probab=50.37 E-value=1e+02 Score=28.04 Aligned_cols=32 Identities=13% Similarity=0.346 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002175 396 KKLEEELKKRDALIERLHEENEKLFDRLTEKA 427 (956)
Q Consensus 396 kkLeEELkkree~LErL~eE~ekL~qrL~eK~ 427 (956)
..|.+.+.++...|.++.++.+.|.++|.+..
T Consensus 26 e~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 26 EELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35777777888888888888889999988763
No 355
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=50.37 E-value=3.4e+02 Score=34.26 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=23.2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002175 397 KLEE-ELKKRDALIERLHEENEKLFDRLTEKAS 428 (956)
Q Consensus 397 kLeE-ELkkree~LErL~eE~ekL~qrL~eK~S 428 (956)
++++ ++...+....+...+.-+.|+.+..+-|
T Consensus 355 K~e~ke~ea~E~rkkr~~aei~Kffqk~~~k~~ 387 (811)
T KOG4364|consen 355 KLESKEVEAQELRKKRHEAEIGKFFQKIDNKFS 387 (811)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcccccccC
Confidence 3444 5666666777777888899999888844
No 356
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=50.18 E-value=2.6e+02 Score=35.96 Aligned_cols=11 Identities=18% Similarity=0.507 Sum_probs=6.0
Q ss_pred HHHHhhhcCcc
Q 002175 575 YIRSLLARSPE 585 (956)
Q Consensus 575 ~~~~~~~~~~~ 585 (956)
+||..|.++|.
T Consensus 750 ~v~~~L~~~~~ 760 (782)
T PRK00409 750 GVQEFLKKHPS 760 (782)
T ss_pred HHHHHHcCCCc
Confidence 45555665553
No 357
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=50.12 E-value=1.3e+02 Score=30.88 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 337 QQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 337 qe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
.+....|..++.++..++.++..+..
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777777777777765554
No 358
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=49.45 E-value=5.3e+02 Score=30.79 Aligned_cols=20 Identities=5% Similarity=0.086 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 002175 342 TIKTLQAKINSIESQRNEAL 361 (956)
Q Consensus 342 eIe~LqeEik~LE~qL~el~ 361 (956)
...++++-++.++..+..++
T Consensus 299 RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444
No 359
>PF15456 Uds1: Up-regulated During Septation
Probab=49.12 E-value=1.9e+02 Score=29.06 Aligned_cols=31 Identities=48% Similarity=0.453 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002175 395 SKKLEEELKKRDALIERLHEENEKLFDRLTE 425 (956)
Q Consensus 395 ~kkLeEELkkree~LErL~eE~ekL~qrL~e 425 (956)
..+-++++...+..++.+..+..++..|+.+
T Consensus 76 ~~~~eeel~~~~rk~ee~~~eL~~le~R~~~ 106 (124)
T PF15456_consen 76 SLKAEEELAESDRKCEELAQELWKLENRLAE 106 (124)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4466777777777777777777777776654
No 360
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=49.07 E-value=21 Score=44.85 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 391 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 391 ~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.......|+.++..++..+..|..++..|..+|...
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEKL 536 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556688889999999999999999999888764
No 361
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=49.04 E-value=1.7e+02 Score=29.03 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 395 SKKLEEELKKRDALIERLHEENEKLFDRLT 424 (956)
Q Consensus 395 ~kkLeEELkkree~LErL~eE~ekL~qrL~ 424 (956)
.+.++..++++...+..+..+.+.+.+.+.
T Consensus 103 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 103 KEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 362
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.69 E-value=1.9e+02 Score=35.04 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 333 KMQIQQRDSTIKTLQAKINSIESQRNEAL 361 (956)
Q Consensus 333 k~qlqe~e~eIe~LqeEik~LE~qL~el~ 361 (956)
...+.+.+.+++.+++++..++.++..+.
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 144 LTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344445555555555555555554443
No 363
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=48.50 E-value=6.4e+02 Score=31.50 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=6.4
Q ss_pred HHHHHHHhhcc
Q 002175 14 CFEELFDLSNS 24 (956)
Q Consensus 14 al~dLF~~I~~ 24 (956)
..+++|+.|+.
T Consensus 180 s~d~v~~~i~~ 190 (607)
T KOG0240|consen 180 SPDEVLDVIDE 190 (607)
T ss_pred CHHHHHHHHhc
Confidence 34566666653
No 364
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=47.94 E-value=2.3e+02 Score=26.31 Aligned_cols=14 Identities=7% Similarity=0.235 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 002175 345 TLQAKINSIESQRN 358 (956)
Q Consensus 345 ~LqeEik~LE~qL~ 358 (956)
.++++|..|+.+|+
T Consensus 61 ~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 61 QYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 365
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=47.59 E-value=5.5e+02 Score=30.53 Aligned_cols=37 Identities=5% Similarity=0.216 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002175 330 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEV 366 (956)
Q Consensus 330 eElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~ 366 (956)
+.+..++++++.+.+.++.++..--+.+++-.+....
T Consensus 359 d~L~keLeekkreleql~~q~~v~~saLdtCikaKsq 395 (442)
T PF06637_consen 359 DSLAKELEEKKRELEQLKMQLAVKTSALDTCIKAKSQ 395 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccC
Confidence 3344455555555555555555555555554444433
No 366
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=47.53 E-value=3.9e+02 Score=31.28 Aligned_cols=175 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002175 235 KKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQ 314 (956)
Q Consensus 235 ~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee 314 (956)
++.+.+.-+....-+.......+=..-...|..+.+++..+...-.++..+.......++.++.++...-+...-.+-.+
T Consensus 114 ~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilE 193 (561)
T KOG1103|consen 114 KKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILE 193 (561)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhcccccccccCCCCcccccccc
Q 002175 315 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES-----------QRNEALHSSEVRSTIRSEPMPAVSSVLR 383 (956)
Q Consensus 315 ~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~-----------qL~el~~s~~~rs~~~~es~~~s~s~~k 383 (956)
..+.-.+..+..+..+++-.+++.-.+......++...-++ ++++...+-+.
T Consensus 194 cKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~----------------- 256 (561)
T KOG1103|consen 194 CKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREF----------------- 256 (561)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHH-----------------
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 384 TTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 384 ~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
++.+.+.....++.+.+|...+++-...+......++..+.-+
T Consensus 257 LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeqLk 299 (561)
T KOG1103|consen 257 LRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQLK 299 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcccccc
No 367
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=47.44 E-value=2.6e+02 Score=35.51 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 245 RKELYEREKEIQDLKQEILGLRQALKEA 272 (956)
Q Consensus 245 r~el~~~~~eI~~Lq~EI~~Lk~~L~~~ 272 (956)
..++.+.+..+..+.+.+..|...+...
T Consensus 97 E~~Lankda~lrq~eekn~slqerLela 124 (916)
T KOG0249|consen 97 ENELANKDADLRQNEEKNRSLQERLELA 124 (916)
T ss_pred HHHHhCcchhhchhHHhhhhhhHHHHHh
Confidence 3344444455555555555555554443
No 368
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.12 E-value=6.6e+02 Score=31.29 Aligned_cols=7 Identities=57% Similarity=0.994 Sum_probs=5.3
Q ss_pred hhccccC
Q 002175 184 VLADSLG 190 (956)
Q Consensus 184 LLqDsLg 190 (956)
+|+|.+|
T Consensus 479 ~L~d~~G 485 (741)
T KOG4460|consen 479 ILPDILG 485 (741)
T ss_pred eccccCC
Confidence 5778887
No 369
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.55 E-value=4.3e+02 Score=34.02 Aligned_cols=14 Identities=29% Similarity=0.543 Sum_probs=8.5
Q ss_pred HHHHhhhcCccccc
Q 002175 575 YIRSLLARSPELQS 588 (956)
Q Consensus 575 ~~~~~~~~~~~~~~ 588 (956)
+||..|.++|...+
T Consensus 739 ~v~~~L~~~~~V~~ 752 (771)
T TIGR01069 739 GVQELLKNHPKVKS 752 (771)
T ss_pred HHHHHhcCCcceee
Confidence 56666777775433
No 370
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=46.39 E-value=4.3e+02 Score=33.96 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 313 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 361 (956)
Q Consensus 313 ee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~ 361 (956)
..+.+|..++..-.+...++..++--.+.+.+.|...+.+++....+..
T Consensus 1059 ~RRDELh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~R 1107 (1480)
T COG3096 1059 IRRDELHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMR 1107 (1480)
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3556677777777777777888888888888888888888887765543
No 371
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=46.03 E-value=2.7e+02 Score=34.50 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=15.1
Q ss_pred hhhhhHHHHHHHHhhhhhhhh
Q 002175 750 ALGQLLSEYAKRVYNSQLQHL 770 (956)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~ 770 (956)
-|++.|+.+-+...+.|.+-.
T Consensus 509 dLd~ql~~a~~~~~~~~~~~~ 529 (555)
T TIGR03545 509 NLDKLLAKAFKKEIAAQIEKA 529 (555)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 478888888777777776643
No 372
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=45.66 E-value=5.9e+02 Score=30.30 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC-CCCCCCCCccc
Q 002175 393 AVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASSVSSPQLSSPLS-KGSVNVQPRDM 451 (956)
Q Consensus 393 ~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK~Ssgsspq~~Sp~s-~~s~~~q~~~~ 451 (956)
.+.+.|++.-+..++...++.-.+..|..++..| +.|..+.|+. -++||++|-|-
T Consensus 360 ~L~keLeekkreleql~~q~~v~~saLdtCikaK----sq~~~p~~r~~~p~pnp~pidp 415 (442)
T PF06637_consen 360 SLAKELEEKKRELEQLKMQLAVKTSALDTCIKAK----SQPMTPGPRPVGPVPNPPPIDP 415 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhc----cCCCCCCCCCCCCCCCCCCCCh
Confidence 4455555555555555566666777788888888 3333333322 23456666543
No 373
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=45.25 E-value=8.1e+02 Score=31.77 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=11.8
Q ss_pred ChHHHHHHHHHHhhcc
Q 002175 9 GLYARCFEELFDLSNS 24 (956)
Q Consensus 9 GIIPRal~dLF~~I~~ 24 (956)
.|+.+.+++|-.+|+.
T Consensus 427 aiYSkLFD~lV~~iNq 442 (1259)
T KOG0163|consen 427 AIYSKLFDWLVGRINQ 442 (1259)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4677778888888764
No 374
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=45.05 E-value=3.4e+02 Score=27.39 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 324 QLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 359 (956)
Q Consensus 324 ~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~e 359 (956)
...+...+++..+......++.++..+..|+.++.+
T Consensus 86 ~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 86 QIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444445555555555555555555555543
No 375
>PRK00295 hypothetical protein; Provisional
Probab=44.85 E-value=1.5e+02 Score=26.63 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 315 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 361 (956)
Q Consensus 315 ~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~ 361 (956)
+..|..++.......+++...+-+.+..|..|+.+++.|..++.+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666677777777778888888888888888777654
No 376
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=44.19 E-value=6.5e+02 Score=30.31 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=25.6
Q ss_pred cccCCchhhHHHhhhCC-----CCccccchhhhccchhh
Q 002175 489 IKTTPAGEYLTAALNDF-----NPEQYDNLAVISDGANK 522 (956)
Q Consensus 489 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 522 (956)
++-++.|.|+.||=||+ |-|+|.-.+-.+---.|
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk 263 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK 263 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccc
Confidence 77889999999999998 56777666655554555
No 377
>PRK02793 phi X174 lysis protein; Provisional
Probab=44.11 E-value=1.5e+02 Score=26.86 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 313 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 313 ee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
..+..|..++.......+++...+-+.+..|..|+.+++.|..++.+...
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455666666666666777777777888888888888888888866543
No 378
>PRK02119 hypothetical protein; Provisional
Probab=44.11 E-value=1.6e+02 Score=26.74 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 312 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 361 (956)
Q Consensus 312 kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~ 361 (956)
...+..|..++.......++++..+-+.+..|..|+.+++.|..++.+..
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455566666666666667777777777788888888888877776543
No 379
>PLN02939 transferase, transferring glycosyl groups
Probab=43.55 E-value=3.6e+02 Score=35.65 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 250 EREKEIQDLKQEILGLRQALKEAND 274 (956)
Q Consensus 250 ~~~~eI~~Lq~EI~~Lk~~L~~~~~ 274 (956)
..-.+-+.|+.+|..|+-.|.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (977)
T PLN02939 160 KILTEKEALQGKINILEMRLSETDA 184 (977)
T ss_pred HHHHHHHHHHhhHHHHHHHhhhhhh
Confidence 3344555677777777766665433
No 380
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=43.26 E-value=4.5e+02 Score=28.29 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 314 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKI 350 (956)
Q Consensus 314 e~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEi 350 (956)
....|..++..+.....+++.++...+.++..++.+-
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~ 136 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQ 136 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333334444444444444333333
No 381
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=43.23 E-value=5.8e+02 Score=29.48 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=17.4
Q ss_pred EeeCCCCCCHHHhHHHHHHHHHhcc
Q 002175 199 VNICPNAANMSETLSSLNFSSRARS 223 (956)
Q Consensus 199 v~VSPs~~~~eETLsTLrFAsrAK~ 223 (956)
-+..|...+..--|+-+.|+...+.
T Consensus 112 d~~gpe~cDasALLNlin~Cd~F~~ 136 (307)
T PF15112_consen 112 DKTGPEECDASALLNLINSCDHFKK 136 (307)
T ss_pred ccCChhhcCHHHHHHHHHHhhcccc
Confidence 3556777777777777777766554
No 382
>PRK09343 prefoldin subunit beta; Provisional
Probab=43.13 E-value=3.4e+02 Score=26.81 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175 330 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 363 (956)
Q Consensus 330 eElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s 363 (956)
+.+...+...+++.+.+++++.+++.++.++...
T Consensus 81 E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 81 ELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566666666677777777777777666554
No 383
>PRK12705 hypothetical protein; Provisional
Probab=42.99 E-value=7.3e+02 Score=30.59 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=11.9
Q ss_pred CCCCCccccccCCCCCCC
Q 002175 444 VNVQPRDMARNDNNNKGL 461 (956)
Q Consensus 444 ~~~q~~~~~r~~~~~~~~ 461 (956)
-.+-++=+||.+.|....
T Consensus 207 demkGriIGreGrNir~~ 224 (508)
T PRK12705 207 DAMKGRIIGREGRNIRAF 224 (508)
T ss_pred hHhhccccCccchhHHHH
Confidence 356777788777766543
No 384
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=42.93 E-value=1.5e+02 Score=28.20 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=24.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTE 425 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~e 425 (956)
......+.++.+++.++..++.+.++..++..+|.+
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666667777777777777777777776655
No 385
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=42.89 E-value=2.5e+02 Score=26.33 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002175 312 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEV 366 (956)
Q Consensus 312 kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~ 366 (956)
.++++.|..++..++.....+-..++.-+.+...|..+++-|+..+..+......
T Consensus 15 ~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v 69 (80)
T PF10224_consen 15 KEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSV 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445556666666666666666677777777778888888888877777665444
No 386
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=42.88 E-value=8.6e+02 Score=31.39 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhc
Q 002175 393 AVSKKLEEELKKRDALI---ERLHEENEKLFDRLTEKA 427 (956)
Q Consensus 393 ~l~kkLeEELkkree~L---ErL~eE~ekL~qrL~eK~ 427 (956)
+..+.|+++|++.-... -.|.+..|+|..+|.+-.
T Consensus 695 ~kieal~~qik~~~~~a~~~~~lkek~e~l~~e~~~~~ 732 (762)
T PLN03229 695 EKIEALEQQIKQKIAEALNSSELKEKFEELEAELAAAR 732 (762)
T ss_pred HHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHhh
Confidence 44556666666554433 456677777878776643
No 387
>PRK00736 hypothetical protein; Provisional
Probab=42.50 E-value=1.3e+02 Score=27.04 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002175 396 KKLEEELKKRDALIERLHEENEKLFDRLTEKAS 428 (956)
Q Consensus 396 kkLeEELkkree~LErL~eE~ekL~qrL~eK~S 428 (956)
..|.+.+.++...|.+|.+....|.++|.+..+
T Consensus 22 e~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 22 EELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356677777777788888888888888877643
No 388
>PRK00736 hypothetical protein; Provisional
Probab=42.47 E-value=1.7e+02 Score=26.30 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 315 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 361 (956)
Q Consensus 315 ~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~ 361 (956)
+..|..++.......++++..+-..+..|..|+.+++.|..++.+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556666666666677777777778888888888888888776643
No 389
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=42.33 E-value=4.5e+02 Score=27.97 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 252 EKEIQDLKQEILGLRQALKEANDQ 275 (956)
Q Consensus 252 ~~eI~~Lq~EI~~Lk~~L~~~~~q 275 (956)
+..|.+++..+.+++..+......
T Consensus 29 ~q~ird~e~~l~~a~~~~a~~~a~ 52 (221)
T PF04012_consen 29 EQAIRDMEEQLRKARQALARVMAN 52 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444444333
No 390
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=42.25 E-value=4.9e+02 Score=28.42 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLFD 421 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~q 421 (956)
....+..+++.+...++..+..+..+.+.+..
T Consensus 158 ~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 158 EENRLQEKIEKEKNTRESKLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666555543
No 391
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=42.25 E-value=3.6e+02 Score=26.79 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002175 252 EKEIQDLKQEILGLRQALKE 271 (956)
Q Consensus 252 ~~eI~~Lq~EI~~Lk~~L~~ 271 (956)
...++.|+.++..|..++..
T Consensus 12 ~~~~~~l~~~~~~l~~~~~~ 31 (140)
T PRK03947 12 AAQLQALQAQIEALQQQLEE 31 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433333
No 392
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=42.24 E-value=4.8e+02 Score=28.25 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 245 RKELYEREKEIQDLKQEILGLRQALKEANDQC 276 (956)
Q Consensus 245 r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~ 276 (956)
...+..--.+|..|+..+.+|+..-.++.+-|
T Consensus 47 NrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 47 NRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555444443
No 393
>PRK04325 hypothetical protein; Provisional
Probab=42.14 E-value=1.8e+02 Score=26.53 Aligned_cols=48 Identities=21% Similarity=0.211 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 314 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 361 (956)
Q Consensus 314 e~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~ 361 (956)
.+..|..++.......+++...+-+.+..|..|+.+++.|..++.+..
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555666666666666777777777777777777777777776543
No 394
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.74 E-value=7.5e+02 Score=30.37 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 394 VSKKLEEELKKRDALIERLHEENEKL 419 (956)
Q Consensus 394 l~kkLeEELkkree~LErL~eE~ekL 419 (956)
+++.+..+.+-+.....-+....|.+
T Consensus 467 ~~e~lt~~~e~l~~Lv~Ilk~d~edi 492 (508)
T KOG3091|consen 467 MKEHLTQEQEALTKLVNILKGDQEDI 492 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33334333333333334444444444
No 395
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.44 E-value=78 Score=32.51 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhccc
Q 002175 312 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDST--IKTLQAKINSIESQRNEALHSSE 365 (956)
Q Consensus 312 kee~~qLq~ql~~l~~~eeElk~qlqe~e~e--Ie~LqeEik~LE~qL~el~~s~~ 365 (956)
..++..|+.++..+......+..++....+. ..++...+..++.++.++.....
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555544444444444444443 24555555555555555444443
No 396
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=41.17 E-value=6.9e+02 Score=29.76 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 401 ELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 401 ELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.+....+++.+...+...+..+|..-
T Consensus 285 ~~~~~~~~l~~~~~~l~~~~~~l~~a 310 (457)
T TIGR01000 285 QLAKVKQEITDLNQKLLELESKIKSL 310 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667777776666554
No 397
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=40.85 E-value=3.4e+02 Score=26.17 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002175 332 QKMQIQQRDSTIKTLQAKINSIE 354 (956)
Q Consensus 332 lk~qlqe~e~eIe~LqeEik~LE 354 (956)
+..++......+..++..+..+.
T Consensus 86 l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 86 LKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 398
>PF13166 AAA_13: AAA domain
Probab=40.79 E-value=8.2e+02 Score=30.54 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 327 QLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 327 ~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
....+++..+.+....+..+..+...++..+
T Consensus 370 ~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~ 400 (712)
T PF13166_consen 370 SIIDELNELIEEHNEKIDNLKKEQNELKDKL 400 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444
No 399
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=40.72 E-value=3.5e+02 Score=26.25 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=19.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLT 424 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~ 424 (956)
...+..+.++..++.++..++.+.+....+.+.++
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~ 117 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQ 117 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555565555555555555555555444
No 400
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=40.61 E-value=7.3e+02 Score=29.93 Aligned_cols=107 Identities=14% Similarity=0.164 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 252 EKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTL--QSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLE 329 (956)
Q Consensus 252 ~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eL--E~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~e 329 (956)
-.+++.|+.++..|++...............+....+....+ ...-..-+.+++.-.+.+..+-+.|-.++..++...
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~v 233 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDII 233 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888888777666555444444433332222221 111112334444444455555566666666666666
Q ss_pred HHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 330 QEQK------------MQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 330 eElk------------~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
+.++ .+++.-.+.|.....+++.|+.-+.
T Consensus 234 E~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~ 274 (426)
T smart00806 234 EALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYID 274 (426)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6544 3555556666667777766666653
No 401
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=40.55 E-value=4.5e+02 Score=27.45 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 251 REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQ 321 (956)
Q Consensus 251 ~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~q 321 (956)
...++..|+.++.+|..+........... ......++.....+...+..+....+.++.+|..+
T Consensus 48 ~~~e~~~L~~d~e~L~~q~~~ek~~r~~~-------e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~ 111 (158)
T PF09744_consen 48 HEVELELLREDNEQLETQYEREKELRKQA-------EEELLELEDQWRQERKDLQSQVEQLEEENRQLELK 111 (158)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666555544322211111 11222334444444444444444455555555433
No 402
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=40.53 E-value=7.1e+02 Score=29.73 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 303 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQK-MQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 303 ~Leek~k~~kee~~qLq~ql~~l~~~eeElk-~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
.+.+....++.++..|+..++-+......+- ..-.+.++..+.++..|.+||.+.+
T Consensus 314 qLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq 370 (455)
T KOG3850|consen 314 QLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQ 370 (455)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556666667666666655444322 2223345556677777777776655
No 403
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.26 E-value=2.8e+02 Score=25.06 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002175 257 DLKQEILGLRQALKEANDQ 275 (956)
Q Consensus 257 ~Lq~EI~~Lk~~L~~~~~q 275 (956)
.|..++..|+..++....+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk 20 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRK 20 (69)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3555555665555555433
No 404
>PLN03237 DNA topoisomerase 2; Provisional
Probab=40.11 E-value=2.8e+02 Score=38.13 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 340 DSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKL 419 (956)
Q Consensus 340 e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL 419 (956)
.++++.|..+....+.+++.++..... ..|......+++++.+.++.-.+.++..+++
T Consensus 1125 ~E~~~kL~~~~~~k~~el~~l~~~t~~----------------------~lW~~DLd~f~~~~~~~~~~~~~~~~~~~~~ 1182 (1465)
T PLN03237 1125 LEKVQELCADRDKLNIEVEDLKKTTPK----------------------SLWLKDLDALEKELDKLDKEDAKAEEAREKL 1182 (1465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666655543322 3577777777777777766665555555555
Q ss_pred HHHhhhhccCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCccCCCCcccccCCCeEEEeccCccccccCCch----
Q 002175 420 FDRLTEKASSVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAG---- 495 (956)
Q Consensus 420 ~qrL~eK~Ssgsspq~~Sp~s~~s~~~q~~~~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 495 (956)
...-....+-++..++-..+.++.|..-..+.. +........+ ++-+-.-++--+..+|--...-|.|||-
T Consensus 1183 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~e~~~~~~~---~~~~~~~~~~e~v~p~~~~~~~~~~pa~~~~~ 1257 (1465)
T PLN03237 1183 QRAAARGESGAAKKVSRQAPKKPAPKKTTKKAS--ESETTEETYG---SSAMETENVAEVVKPKGRAGAKKKAPAAAKEK 1257 (1465)
T ss_pred HhhhhhcccccccccccccccCCCcccCccccc--cccchhhccc---ccccccCCCceeecCcccccccccCccccccC
Confidence 433222223333333333333333322222211 0000000111 1111112222333344344445788887
Q ss_pred ------hhHHHhhhCCCCc
Q 002175 496 ------EYLTAALNDFNPE 508 (956)
Q Consensus 496 ------~~~~~~~~~~~~~ 508 (956)
+-|..+|.+||-+
T Consensus 1258 ~~~~~~~~~~~~~~~~~~~ 1276 (1465)
T PLN03237 1258 EEEDEILDLKDRLAAYNLD 1276 (1465)
T ss_pred cccccHHHHHHHHHhcccc
Confidence 5678888888754
No 405
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.74 E-value=2.8e+02 Score=30.04 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002175 254 EIQDLKQEILGLRQALKEAND 274 (956)
Q Consensus 254 eI~~Lq~EI~~Lk~~L~~~~~ 274 (956)
|.-.|+.|+..|...+.....
T Consensus 97 EevrLkrELa~Le~~l~~~~~ 117 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQ 117 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666555443
No 406
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=39.58 E-value=1.7e+02 Score=32.87 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=15.4
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHH
Q 002175 388 GMDSSAVSKKLEEELKKRDALIERL 412 (956)
Q Consensus 388 ~~d~s~l~kkLeEELkkree~LErL 412 (956)
...+.+..++-++|++++++++.+|
T Consensus 234 ~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 234 SVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666666666666666543
No 407
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=39.55 E-value=8.1e+02 Score=30.11 Aligned_cols=84 Identities=30% Similarity=0.301 Sum_probs=48.0
Q ss_pred HHHHHhcCccchhhhhhhhhhhhHHHHHhhhcCccccc-cccCc--chhhhhccCCCCCCCCCCCCCCCCCCcc------
Q 002175 551 FAFIRKMEPTRVMDTMLVSRVRILYIRSLLARSPELQS-IMVSP--VECFLEKSNTGRSRSSSRGSSPARSPVH------ 621 (956)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 621 (956)
...++|-|-.--|.--=..|||=|.||-|-.-+-|=-| .|=-| -+|||=----||. |=|-||
T Consensus 416 lgHLkKEEaeiqaElERLErvrnlHiRELKRi~NEdnSQFkDHptLn~RYLlLhLLGrG---------GFSEVyKAFDl~ 486 (775)
T KOG1151|consen 416 LGHLKKEEAEIQAELERLERVRNLHIRELKRIHNEDNSQFKDHPTLNDRYLLLHLLGRG---------GFSEVYKAFDLT 486 (775)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhccCcchHHHHHHHHHhccc---------cHHHHHHhcccc
Confidence 33444444444444445679999999987654444322 22222 2555543333432 344443
Q ss_pred ---cccccccccccccccccccchh
Q 002175 622 ---YVDEKIQGFKINLKPEKKSKLS 643 (956)
Q Consensus 622 ---~~~~~~~~~~~~~~~~~~~~~~ 643 (956)
||--.||-..-|.|.|||-.+-
T Consensus 487 EqRYvAvKIHqlNK~WrdEKKeNYh 511 (775)
T KOG1151|consen 487 EQRYVAVKIHQLNKNWRDEKKENYH 511 (775)
T ss_pred hhheeeEeeehhccchhhHhhhhHH
Confidence 4556788888899999987553
No 408
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=39.43 E-value=4.6e+02 Score=31.08 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccc
Q 002175 304 LADKHKIEKEQNAQLRNQVAQLLQLEQE---QKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSS 380 (956)
Q Consensus 304 Leek~k~~kee~~qLq~ql~~l~~~eeE---lk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s 380 (956)
++..-....+..++|++.-.+....-++ ...+++.++..++.+.+.++..+.|+..+..-... ....
T Consensus 134 ~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka----------~~d~ 203 (464)
T KOG4637|consen 134 INAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKA----------YIDR 203 (464)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----------HHhH
Q ss_pred cccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 381 VLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 381 ~~k~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
...-.+...+.+.........-.++++.|.+.+.+..++.+.|..+
T Consensus 204 ~~~eqG~qg~~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~ 249 (464)
T KOG4637|consen 204 FRREQGSQGNSEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKAL 249 (464)
T ss_pred HHHHhccCCchHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHH
No 409
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=38.90 E-value=4.2e+02 Score=26.63 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 324 QLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 324 ~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
++....+.+..++.-.++..+.+++++++|+..|.....
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444445556666666666666666666666654443
No 410
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=38.50 E-value=3.3e+02 Score=25.34 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 002175 340 DSTIKTLQAKI 350 (956)
Q Consensus 340 e~eIe~LqeEi 350 (956)
+++|..|..++
T Consensus 63 EeEI~rLr~eL 73 (79)
T PF08581_consen 63 EEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 411
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=38.47 E-value=5e+02 Score=30.33 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002175 335 QIQQRDSTIKTLQAKINSIESQ 356 (956)
Q Consensus 335 qlqe~e~eIe~LqeEik~LE~q 356 (956)
-+++++.+|.+|+..+..++..
T Consensus 188 vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 188 VLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhcc
Confidence 3444555556666655555543
No 412
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=38.28 E-value=3.4e+02 Score=33.64 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 398 LEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 398 LeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
++...+..++++.++..--.+=.++|.++
T Consensus 242 l~~~~~~~~~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 242 LQNDKKQLKADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred HHHhHHHHHHHHHHHHhccHhHHHHHHHH
Confidence 33333334444444444444456666666
No 413
>PF14282 FlxA: FlxA-like protein
Probab=38.09 E-value=2.8e+02 Score=26.76 Aligned_cols=55 Identities=31% Similarity=0.358 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 308 HKIEKEQNAQLRNQVAQLLQ----LEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 308 ~k~~kee~~qLq~ql~~l~~----~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
+..+++++..|+.++..+.. -.++.+.+++.++..|..|+..|..+..+..+...
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~ 79 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQ 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554 12334555556666666666666666665554443
No 414
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=38.01 E-value=1.6e+02 Score=35.61 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=27.9
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 389 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 389 ~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
..+......+..++.+++.+++++.++..++.++|...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 134 DFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444556666777777888888888888888888766
No 415
>PRK00846 hypothetical protein; Provisional
Probab=38.00 E-value=2.3e+02 Score=26.32 Aligned_cols=51 Identities=10% Similarity=-0.013 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 002175 313 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHS 363 (956)
Q Consensus 313 ee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s 363 (956)
..+..|..++.-.....++++..+-..+..|..|+.+++.|..++.+...+
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344455555555555566666677777777888888888888877766543
No 416
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.94 E-value=3e+02 Score=25.97 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 249 YEREKEIQDLKQEILGLRQALKEAND 274 (956)
Q Consensus 249 ~~~~~eI~~Lq~EI~~Lk~~L~~~~~ 274 (956)
.....++..|+.++..|+..++....
T Consensus 15 e~~~~e~~~L~~~~~~L~~~~R~~~G 40 (100)
T PF01486_consen 15 EELQQEIAKLRKENESLQKELRHLMG 40 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 35566777888888888777766543
No 417
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=37.81 E-value=3.1e+02 Score=24.82 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002175 253 KEIQDLKQEILGLRQALK 270 (956)
Q Consensus 253 ~eI~~Lq~EI~~Lk~~L~ 270 (956)
.++..|+..+..+..++.
T Consensus 5 a~~~~Lr~rLd~~~rk~~ 22 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNS 22 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 418
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=37.59 E-value=11 Score=45.43 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=0.0
Q ss_pred EEEEEEEEcCcccccCCc
Q 002175 35 AVTVFELYNEQLRELLPQ 52 (956)
Q Consensus 35 sVSylEIYNE~V~DLL~~ 52 (956)
+||++.+....+.|.+..
T Consensus 101 SvSmmDLQD~~~~~~~~s 118 (495)
T PF12004_consen 101 SVSMMDLQDNRVGDMGHS 118 (495)
T ss_dssp ------------------
T ss_pred cceeecCcCccccccccc
Confidence 566777766666666544
No 419
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=37.48 E-value=8.4e+02 Score=29.71 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002175 337 QQRDSTIKTLQAKINSIESQRNE 359 (956)
Q Consensus 337 qe~e~eIe~LqeEik~LE~qL~e 359 (956)
-+++++..-|.++++.|+.||..
T Consensus 399 ~erEkEr~~l~~eNk~L~~QLrD 421 (488)
T PF06548_consen 399 AEREKERRFLKDENKGLQIQLRD 421 (488)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHh
Confidence 35677778888888888888863
No 420
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=36.71 E-value=8.3e+02 Score=31.48 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=21.1
Q ss_pred hhhcCccccccccCcchhhhhccCCCCCCCCCCC
Q 002175 579 LLARSPELQSIMVSPVECFLEKSNTGRSRSSSRG 612 (956)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (956)
+|---.--+++-..|+||..-+...-|-|.++.|
T Consensus 773 ~lpt~~ggs~v~f~d~e~l~~~sp~~rk~~~~~~ 806 (809)
T KOG0247|consen 773 VLPTVGGGSSVDFLDIERLKQESPSPRKRRSSTG 806 (809)
T ss_pred ccccCCCccceecccHHHHhcCCCCcccCCCcCC
Confidence 3333345577888888988766555555555544
No 421
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=36.49 E-value=9.1e+02 Score=29.86 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=15.2
Q ss_pred HHHHhhhHHHHHHHHHHh
Q 002175 150 VLHVMKSLSALGDVLSSL 167 (956)
Q Consensus 150 a~~INkSL~aLg~VI~aL 167 (956)
-+++++++++|.+.+.+-
T Consensus 195 ~~~lqk~f~alEk~mka~ 212 (531)
T PF15450_consen 195 CSFLQKSFLALEKRMKAQ 212 (531)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467899999999999887
No 422
>PRK02793 phi X174 lysis protein; Provisional
Probab=36.21 E-value=2.5e+02 Score=25.47 Aligned_cols=32 Identities=13% Similarity=0.272 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002175 396 KKLEEELKKRDALIERLHEENEKLFDRLTEKA 427 (956)
Q Consensus 396 kkLeEELkkree~LErL~eE~ekL~qrL~eK~ 427 (956)
..|.+.+..+..+|.++.++...|.++|.+..
T Consensus 25 e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 25 EELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35777777788888888888888888888863
No 423
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=36.15 E-value=3.9e+02 Score=27.14 Aligned_cols=33 Identities=9% Similarity=0.365 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 325 LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 325 l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
+....+.++..+++.+..+..+..++..|+..+
T Consensus 51 ~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~ 83 (126)
T PF07028_consen 51 LSKIQESQRSELKELKQELDVLSKELQALRKEY 83 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555566666666665555
No 424
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=35.87 E-value=5.9e+02 Score=29.34 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 402 LKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 402 Lkkree~LErL~eE~ekL~qrL~eK 426 (956)
..++-+.|.+...|.|.+.+++.++
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEEQ 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555566666777777776
No 425
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=35.86 E-value=8.3e+02 Score=29.60 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhhh
Q 002175 413 HEENEKLFDRLTEK 426 (956)
Q Consensus 413 ~eE~ekL~qrL~eK 426 (956)
-.+.....++|..|
T Consensus 363 l~~Ake~~eklkKK 376 (575)
T KOG4403|consen 363 LKEAKEMAEKLKKK 376 (575)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444555666666
No 426
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=35.86 E-value=6.2e+02 Score=27.68 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 391 SSAVSKKLEEELKKRDALIERLHEENE 417 (956)
Q Consensus 391 ~s~l~kkLeEELkkree~LErL~eE~e 417 (956)
...+.+++.+........++.=...++
T Consensus 148 E~~i~krl~e~~~~l~~~i~~Ek~~Re 174 (247)
T PF06705_consen 148 EENILKRLEEEENRLQEKIEKEKNTRE 174 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777666666654433333
No 427
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=35.82 E-value=2.3e+02 Score=27.75 Aligned_cols=49 Identities=24% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 314 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 314 e~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
...++..++..+.....+++.++.+.-.+...|+-++..|+..+.+...
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555555555666666666666666677777777777665544
No 428
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=35.72 E-value=5.9e+02 Score=32.44 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=11.1
Q ss_pred cccccchhhhhhh-hccccc
Q 002175 636 PEKKSKLSSVVLR-MRGIDQ 654 (956)
Q Consensus 636 ~~~~~~~~~~~~~-~~~~~~ 654 (956)
..|+.|+..+.++ +-|..+
T Consensus 431 ~~~~~~v~~~l~~r~s~~P~ 450 (683)
T PF08580_consen 431 GSKSDRVGAFLLRRMSIKPQ 450 (683)
T ss_pred cccccccchhhhhhcccCCC
Confidence 4566777777665 444444
No 429
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=35.60 E-value=2.5e+02 Score=34.78 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCC
Q 002175 295 SDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEP 374 (956)
Q Consensus 295 ~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es 374 (956)
..+-.++.++.+....+.--.+.|-.++.++..+..-++-++...+..-..|+++|.+++++|++++.+... -+....
T Consensus 304 eNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~--ar~~~~ 381 (832)
T KOG2077|consen 304 ENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED--ARQKAK 381 (832)
T ss_pred HHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhc
Q ss_pred CccccccccccccccChhHHHHHHHHHHHHHHHHHH
Q 002175 375 MPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE 410 (956)
Q Consensus 375 ~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LE 410 (956)
.....+++.+..---.-.++.+-|.+...=++.+.+
T Consensus 382 ~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLME 417 (832)
T KOG2077|consen 382 DDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLME 417 (832)
T ss_pred ccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHH
No 430
>PRK00295 hypothetical protein; Provisional
Probab=35.32 E-value=2.1e+02 Score=25.66 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002175 396 KKLEEELKKRDALIERLHEENEKLFDRLTEKA 427 (956)
Q Consensus 396 kkLeEELkkree~LErL~eE~ekL~qrL~eK~ 427 (956)
..|.+.+.++..+|.+|......|.++|.+..
T Consensus 22 e~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 22 QALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35666777777778888888888888888874
No 431
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=35.30 E-value=3.1e+02 Score=30.56 Aligned_cols=22 Identities=36% Similarity=0.267 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002175 249 YEREKEIQDLKQEILGLRQALK 270 (956)
Q Consensus 249 ~~~~~eI~~Lq~EI~~Lk~~L~ 270 (956)
.+++.+|.+|.+|.+.|+.+-+
T Consensus 93 ~eme~~i~dL~een~~L~~en~ 114 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNEND 114 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 432
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=35.29 E-value=5.3e+02 Score=31.64 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=25.1
Q ss_pred chhhhhccccCCCCeEEEEEeeCCCCCCHHHhHHHHHHHHHhcc
Q 002175 180 MLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARS 223 (956)
Q Consensus 180 KLTrLLqDsLgGNSkT~mIv~VSPs~~~~eETLsTLrFAsrAK~ 223 (956)
-|..||.-+-|.||++--++|..-......-+.+-|.|+.++..
T Consensus 510 ~~~nLl~h~k~R~~qvpg~~~~a~~~~~~~~sa~EleeGk~lir 553 (790)
T PF07794_consen 510 GLANLLRHIKGRNCQVPGVCNYAQAACYADMSAKELEEGKTLIR 553 (790)
T ss_pred HHHHHHHHHhcccccCCchhhHHhhhhhcccchhhhhhhHHHHH
Confidence 35667777777777765554443333333345556677766543
No 433
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=35.26 E-value=3.5e+02 Score=24.66 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 002175 341 STIKTLQAKINSIE 354 (956)
Q Consensus 341 ~eIe~LqeEik~LE 354 (956)
..+..+...+...+
T Consensus 47 ~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 47 KQIKELKKKLEELE 60 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 434
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.03 E-value=5.9e+02 Score=27.25 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002175 310 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 364 (956)
Q Consensus 310 ~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~ 364 (956)
.....+..|...+.+++.....+..+.+..+++|..++.....++.++...+...
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777788888888888888888776655443
No 435
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=34.58 E-value=3.1e+02 Score=26.30 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------------------cccccccCCCCccc
Q 002175 322 VAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS-----------------------EVRSTIRSEPMPAV 378 (956)
Q Consensus 322 l~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~-----------------------~~rs~~~~es~~~s 378 (956)
..++....+.++.+++.+...+..++..+.+++.-++++..-. +.......--...-
T Consensus 1 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ 80 (129)
T cd00890 1 LQELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVY 80 (129)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEE
Q ss_pred cccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 379 SSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 379 ~s~~k~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.. ....+...........++.++.+++..+..+..+.+.+...|..+
T Consensus 81 ve-~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 81 VE-KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred EE-ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 436
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=34.37 E-value=1.3e+02 Score=35.20 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 318 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 318 Lq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
|...+.++.+...++...+.+.+..++.++..+..++..+.+++.
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444555555555555555555444
No 437
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=34.37 E-value=6.4e+02 Score=27.40 Aligned_cols=71 Identities=21% Similarity=0.212 Sum_probs=42.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 287 WKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360 (956)
Q Consensus 287 ~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el 360 (956)
.+....++..+...+..+........+.+..+..++..+.-..++++.. ++.....++..|..|+.++...
T Consensus 81 ~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~~~---r~~e~~~YesRI~dLE~~L~~~ 151 (196)
T PF15272_consen 81 SKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQNE---RERERIAYESRIADLERQLNSR 151 (196)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555554444455556666666665555554444432 3345558889999999998733
No 438
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=33.98 E-value=6.6e+02 Score=27.50 Aligned_cols=53 Identities=11% Similarity=0.197 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 002175 314 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEV 366 (956)
Q Consensus 314 e~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~ 366 (956)
.+++|+..+..++....+.+..+.+.+.............+.++++++.....
T Consensus 33 ~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~s 85 (207)
T PF05546_consen 33 EIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHS 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 44555555555555555555566666666666666666666777777776555
No 439
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=33.80 E-value=14 Score=47.50 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 002175 313 EQNAQLRNQVAQL 325 (956)
Q Consensus 313 ee~~qLq~ql~~l 325 (956)
..+..++.....+
T Consensus 384 k~l~e~k~~~~~~ 396 (859)
T PF01576_consen 384 KQLAEWKAKVEEL 396 (859)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 440
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=33.64 E-value=2.3e+02 Score=25.32 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002175 319 RNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 364 (956)
Q Consensus 319 q~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~ 364 (956)
..++..++.....+...+++....+..++.+|..|+.++..+....
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555544443
No 441
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=33.41 E-value=6.5e+02 Score=27.26 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=3.6
Q ss_pred CCccccc
Q 002175 447 QPRDMAR 453 (956)
Q Consensus 447 q~~~~~r 453 (956)
-++|+|-
T Consensus 174 ~~rD~Gd 180 (195)
T PF10226_consen 174 AARDVGD 180 (195)
T ss_pred CCCCCCC
Confidence 4555553
No 442
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=33.20 E-value=7.7e+02 Score=27.98 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 312 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSI 353 (956)
Q Consensus 312 kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~L 353 (956)
..+.++++.++..+...+..+..+++.+..+++..++.++.|
T Consensus 175 ~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 175 QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433334444444444443333333333
No 443
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=33.18 E-value=7e+02 Score=30.25 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.2
Q ss_pred CCCCchhhhhccccCCCCeEEE
Q 002175 176 YENSMLTKVLADSLGESSKTLM 197 (956)
Q Consensus 176 YRdSKLTrLLqDsLgGNSkT~m 197 (956)
-|+-+||+=+..-++|+.+|.|
T Consensus 343 KrEVPltre~~~e~~~rprts~ 364 (583)
T KOG3809|consen 343 KREVPLTREMTGEGGGRPRTSM 364 (583)
T ss_pred cccCCCCccCcccccCCcccCC
Confidence 4677899999999999999887
No 444
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=32.87 E-value=6.3e+02 Score=26.89 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 299 SENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQ 337 (956)
Q Consensus 299 ~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlq 337 (956)
+.+.++-+........|..|...+..+......+..++.
T Consensus 81 qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 81 QVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444444443333
No 445
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=32.61 E-value=6.1e+02 Score=26.69 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=34.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 290 SFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 290 ~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
+..|+..+...+.........+......+......+......+...+......|..|+.++..+..++
T Consensus 112 i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I 179 (184)
T PF05791_consen 112 IEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEI 179 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 33444444444444444444444455555555555555555555555555556666666666655544
No 446
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=32.23 E-value=2.7e+02 Score=33.16 Aligned_cols=36 Identities=28% Similarity=0.322 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 391 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 391 ~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.....+++.+...++.++++++.++...|...+...
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666666666666666666666666665544
No 447
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=32.15 E-value=1.7e+02 Score=36.77 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 394 VSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 394 l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.++..++++.+++..++.|+.|++=|.-++...
T Consensus 27 lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 27 LKESHEEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677888888888888888877665554444
No 448
>PF15556 Zwint: ZW10 interactor
Probab=31.97 E-value=7.2e+02 Score=27.29 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHH-HHH
Q 002175 244 ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKS---ENYMLADKHKIEKEQNA-QLR 319 (956)
Q Consensus 244 ~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~---e~~~Leek~k~~kee~~-qLq 319 (956)
.+.+.......+++|+....+--+.+...-.+. ...+++..+....|++.+.. ...+.+++.+....+-. +-.
T Consensus 57 sRqkai~aKeQWKeLKAtYqehVEaIk~alt~a---L~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwqlqQe 133 (252)
T PF15556_consen 57 SRQKAIEAKEQWKELKATYQEHVEAIKSALTQA---LPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQLQQE 133 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666777666554444444332222 22333333333344433332 22233333333222111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 320 NQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 320 ~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
+.+..+...-.+.+........+++.+..++..++.+.
T Consensus 134 K~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa 171 (252)
T PF15556_consen 134 KHLQHLAEVSAEVRERQTGTQQELERLYQELGTLKQQA 171 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333444444455555555566666666666666554
No 449
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=31.93 E-value=4.5e+02 Score=24.87 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 330 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 330 eElk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
+++..+......++..++.++..++.++.....
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777777777777665543
No 450
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=31.80 E-value=2.5e+02 Score=32.55 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=8.7
Q ss_pred hhccchhhHHHHHH
Q 002175 515 VISDGANKLLMLVL 528 (956)
Q Consensus 515 ~~~~~~~~~~~~~~ 528 (956)
..+|-+-|++-++|
T Consensus 330 ~~~d~~~~~e~q~l 343 (405)
T KOG2010|consen 330 TLEQSISRLEGQVL 343 (405)
T ss_pred hHHHHHHHHHHHHH
Confidence 34566777766555
No 451
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=31.69 E-value=4.1e+02 Score=26.03 Aligned_cols=37 Identities=19% Similarity=0.325 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 316 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINS 352 (956)
Q Consensus 316 ~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~ 352 (956)
.-|++.+.+......+++.++...+..+..++.++..
T Consensus 15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dS 51 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDS 51 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333443333333333333333
No 452
>PRK06811 RNA polymerase factor sigma-70; Validated
Probab=31.66 E-value=2.5e+02 Score=28.77 Aligned_cols=144 Identities=12% Similarity=0.132 Sum_probs=74.9
Q ss_pred CchhhhhhHHHHHHHHhhhhhhhhhhhhhhcccccchhhhhHH--HHHhhhhhhhHH------------HHHHHHHhhcc
Q 002175 747 STDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVS--KLRSALESVDHR------------RRKVLQQMRSD 812 (956)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------------~~~~~~~~~~~ 812 (956)
...|+.+++..|...||.--..++++.. -.++|||+.|=+ +|-..+++.++. |..++.-+|..
T Consensus 16 d~~a~~~l~~~y~~~l~~~~~~~~~~~~---~~~daeDi~Qe~~i~l~~~~~~~~~~~~~~~~wl~~iarn~~~d~~rk~ 92 (189)
T PRK06811 16 NEKALEFIVDTYGNLVKKIVHKVLGTVN---YSQLIEECVNDIFLSIWNNIDKFDEEKGSFKKWIAAISKYKAIDYKRKL 92 (189)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcccC---chhHHHHHHHHHHHHHHHhHHHhccccccHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999998888877643 256899998843 444555555431 45566555543
Q ss_pred ceeeecccCCCCCCCCCchhhhhhhhhhhcHHHHHHHHHHHHhhccccchh-hhhHhHHHhhHHHHH-hhCccccccCch
Q 002175 813 VALLTLEEGGSPIRNPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLS-RSKKKAMLTSLDELA-ERMPSLLDIDHP 890 (956)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 890 (956)
-.....++-..+.-.+....++.. .-++....+.+.+. .++ +.++-..|.-++.+. +.+...|.|...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~l~~~l~-----~L~~~~r~i~~l~~~~g~s~~EIAe~lgis~~ 162 (189)
T PRK06811 93 TKNNEIDSIDEFILISEESIENEI-----ILKENKEEILKLIN-----DLEKLDREIFIRRYLLGEKIEEIAKKLGLTRS 162 (189)
T ss_pred ccccccccchhhhhcccCCHHHHH-----HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHccCCHHHHHHHHCCCHH
Confidence 322221110011001111222211 11222233333332 222 334444444454432 445556677777
Q ss_pred hHHHHHHHHHHHH
Q 002175 891 CAQRQIADARRMV 903 (956)
Q Consensus 891 ~~~~~~~~~~~~~ 903 (956)
=....+..|++.+
T Consensus 163 ~V~~~l~Ra~~~L 175 (189)
T PRK06811 163 AIDNRLSRGRKKL 175 (189)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666543
No 453
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=31.47 E-value=6.2e+02 Score=26.42 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 330 QEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 330 eElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
+....+.++...++..|+.+++.|+..+
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555666666665555444
No 454
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.47 E-value=1e+03 Score=28.84 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 002175 253 KEIQDLKQEILGLRQALKEANDQCVLL 279 (956)
Q Consensus 253 ~eI~~Lq~EI~~Lk~~L~~~~~q~~~l 279 (956)
.++++|.++|++|.+++.....++..+
T Consensus 173 ee~kqlEe~ieeL~qsl~kd~~~~~~l 199 (446)
T KOG4438|consen 173 EEVKQLEENIEELNQSLLKDFNQQMSL 199 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655554444433
No 455
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.20 E-value=7.7e+02 Score=27.38 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHH
Q 002175 333 KMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERL 412 (956)
Q Consensus 333 k~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LErL 412 (956)
+..+.+....|+..-+..+.++.+-.+-..+++. +..... .......-.....-+..-+..+..+++.+
T Consensus 73 k~~L~e~Rk~IE~~MErFK~vEkesKtKafSkeG--------L~~~~k---~dp~e~ek~e~~~wl~~~Id~L~~QiE~~ 141 (233)
T PF04065_consen 73 KKKLLENRKLIEEQMERFKVVEKESKTKAFSKEG--------LMAASK---LDPKEKEKEEARDWLKDSIDELNRQIEQL 141 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh--------hhcccc---cCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666776666666666665433333333 111111 11111122334444555566666666666
Q ss_pred HHHHHHHHHH
Q 002175 413 HEENEKLFDR 422 (956)
Q Consensus 413 ~eE~ekL~qr 422 (956)
..|.+.|...
T Consensus 142 E~E~E~L~~~ 151 (233)
T PF04065_consen 142 EAEIESLSSQ 151 (233)
T ss_pred HHHHHHHHHh
Confidence 6666665543
No 456
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=31.18 E-value=4.1e+02 Score=25.16 Aligned_cols=6 Identities=17% Similarity=0.506 Sum_probs=2.1
Q ss_pred HHHHHH
Q 002175 346 LQAKIN 351 (956)
Q Consensus 346 LqeEik 351 (956)
+..++.
T Consensus 57 l~~e~k 62 (96)
T PF08647_consen 57 LDNEMK 62 (96)
T ss_pred HHHHHH
Confidence 333333
No 457
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=30.87 E-value=1.1e+03 Score=29.03 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 315 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 315 ~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
..+|-..+.+.....+.+.......+.++.++++++..++-++
T Consensus 434 vdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL 476 (507)
T PF05600_consen 434 VDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKL 476 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3333334444433333344444444444444444444444444
No 458
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=30.65 E-value=1.3e+02 Score=35.25 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 315 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 315 ~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
+..+...+..+....+++...++..++.+..+.+.+..++...
T Consensus 146 i~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 146 IDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444444444445555555555555555555544
No 459
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.64 E-value=4.3e+02 Score=24.34 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 002175 345 TLQAKINSIESQR 357 (956)
Q Consensus 345 ~LqeEik~LE~qL 357 (956)
.++.+....+..+
T Consensus 57 qlk~e~~~WQerl 69 (79)
T COG3074 57 QLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 460
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=30.41 E-value=1.1e+03 Score=28.92 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=17.7
Q ss_pred CCchhhHHHhhhCCCCcccc-chhhhccchhh
Q 002175 492 TPAGEYLTAALNDFNPEQYD-NLAVISDGANK 522 (956)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 522 (956)
+|--+.+.+||....|+-++ |.---++=.|+
T Consensus 443 ~~~d~~v~~~l~~l~~~a~~~Gv~s~~~L~~r 474 (582)
T PF09731_consen 443 APDDELVDAALSSLPPEAAQRGVPSEAQLRNR 474 (582)
T ss_pred CCCChHHHHHHHhcCHHHhhCCCCCHHHHHHH
Confidence 44456677777777776655 54444433333
No 461
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=30.37 E-value=1e+03 Score=28.62 Aligned_cols=111 Identities=12% Similarity=0.137 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cccccccccCCCCccccccccccccc
Q 002175 316 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH-------SSEVRSTIRSEPMPAVSSVLRTTGDG 388 (956)
Q Consensus 316 ~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~-------s~~~rs~~~~es~~~s~s~~k~~ee~ 388 (956)
..+++.+.+......+++-++....++|...+..|..++..|..... ..+.+.....-.+=-....-.+-.+.
T Consensus 274 ~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCrD~AQ~~L~~EV 353 (421)
T KOG2685|consen 274 LAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCRDQAQYRLVDEV 353 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHHhHHHHHHHHHH
Confidence 33445555555555566666666666677777777766666543221 12221111000000001111122334
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 389 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 389 ~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.........|+++|.+-++-+.-|..-..+|...|.-|
T Consensus 354 ~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k 391 (421)
T KOG2685|consen 354 HELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIK 391 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667788888888888888888888888888888
No 462
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=30.21 E-value=3.9e+02 Score=32.20 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 332 QKMQIQQRDSTIKTLQAKINSIESQR 357 (956)
Q Consensus 332 lk~qlqe~e~eIe~LqeEik~LE~qL 357 (956)
++.++++.+..|..++++|...+..+
T Consensus 544 L~~~la~lq~~I~d~~e~i~~~r~~I 569 (583)
T KOG3809|consen 544 LYNILANLQKEINDTKEEISKARGRI 569 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777766554
No 463
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=29.97 E-value=2.4e+02 Score=30.56 Aligned_cols=30 Identities=17% Similarity=0.167 Sum_probs=18.1
Q ss_pred ccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 002175 384 TTGDGMDSSAVSKKLEEELKKRDALIERLH 413 (956)
Q Consensus 384 ~~ee~~d~s~l~kkLeEELkkree~LErL~ 413 (956)
.+++.+.+.....-|+..|+.+++.|++|+
T Consensus 165 v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 165 VREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555566666666666666666553
No 464
>PRK10698 phage shock protein PspA; Provisional
Probab=29.93 E-value=7.6e+02 Score=26.91 Aligned_cols=17 Identities=18% Similarity=0.220 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002175 394 VSKKLEEELKKRDALIE 410 (956)
Q Consensus 394 l~kkLeEELkkree~LE 410 (956)
.-.++++.+...+.+.+
T Consensus 167 ~f~rmE~ki~~~Ea~ae 183 (222)
T PRK10698 167 RFESFERRIDQMEAEAE 183 (222)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33445555555444444
No 465
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=29.92 E-value=54 Score=34.40 Aligned_cols=43 Identities=33% Similarity=0.535 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Q 002175 350 INSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALI---ERLHEENEKLFDRL 423 (956)
Q Consensus 350 ik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~L---ErL~eE~ekL~qrL 423 (956)
++.+|.+++....++.. ||.||.+++.+. |||..|.++|.++|
T Consensus 2 LeD~EsklN~AIERnal-------------------------------LE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNAL-------------------------------LESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=29.82 E-value=7.9e+02 Score=27.07 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 252 EKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENY-MLADKHKIEKEQNAQLRNQVAQLLQLEQ 330 (956)
Q Consensus 252 ~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~-~Leek~k~~kee~~qLq~ql~~l~~~ee 330 (956)
+..|.+.+.++..+++.+.........+..++.........++..-...-. --+.+-...-+....|.+....+.....
T Consensus 30 ~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~ 109 (225)
T COG1842 30 EQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQ 109 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444444433333333333333322211000 0122223333455566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 002175 331 EQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSE 365 (956)
Q Consensus 331 Elk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~ 365 (956)
.........+..+..|+.+|.+++.+...+.....
T Consensus 110 ~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 110 QAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777777777777777777666655443
No 467
>PRK12523 RNA polymerase sigma factor; Reviewed
Probab=29.56 E-value=49 Score=33.31 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=36.8
Q ss_pred CCCCCCCchhhhhhHHHHHHHHhhhhhhhhhhhhhhcccccchhhhhHHHH
Q 002175 741 GGAVPPSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKL 791 (956)
Q Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (956)
-.|+++..+|+++|+..|...||.-=..++.| .++|||+.|=+=+
T Consensus 2 ~~~~~~~~~a~~~l~~~~~~~l~~~~~~~~~~------~~~AeDlvQevfl 46 (172)
T PRK12523 2 SSAQSPHSELVGALYRDHRGWLLAWLRRNVAC------RQRAEDLSQDTFV 46 (172)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCC------HhhHHHHHHHHHH
Confidence 35788899999999999999999877777666 6889998885544
No 468
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.53 E-value=3.2e+02 Score=26.97 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 314 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEA 360 (956)
Q Consensus 314 e~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el 360 (956)
...++..++..+.....+++.++.+.-.+...|+-++..|+..+.+.
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555556666666666666666677777777777777777654
No 469
>PF13166 AAA_13: AAA domain
Probab=29.46 E-value=1.2e+03 Score=29.09 Aligned_cols=15 Identities=13% Similarity=0.417 Sum_probs=8.6
Q ss_pred EEEEEEcCc-ccccCC
Q 002175 37 TVFELYNEQ-LRELLP 51 (956)
Q Consensus 37 SylEIYNE~-V~DLL~ 51 (956)
+-+-|||.. |.+-|.
T Consensus 61 ~~i~VFn~dfv~~nl~ 76 (712)
T PF13166_consen 61 SSIRVFNSDFVEDNLR 76 (712)
T ss_pred CceEEeChHHHHHhcC
Confidence 445678754 555554
No 470
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=29.43 E-value=8.4e+02 Score=29.01 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 255 IQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKM 334 (956)
Q Consensus 255 I~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~ 334 (956)
|..|+.+...++.++.............+........+++..+..+-..+.........-.++..+.+.......+..-.
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~ 366 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLS 366 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 002175 335 QIQQRDSTIKTLQAKINSIESQRNEALHSSE 365 (956)
Q Consensus 335 qlqe~e~eIe~LqeEik~LE~qL~el~~s~~ 365 (956)
.+-..+.+...|+.+.+..+.-++.+.....
T Consensus 367 ~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~q 397 (458)
T COG3206 367 KLPKLQVQLRELEREAEAARSLYETLLQRYQ 397 (458)
T ss_pred hchHhhhHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.38 E-value=7.3e+02 Score=27.62 Aligned_cols=100 Identities=9% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHH
Q 002175 325 LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKK 404 (956)
Q Consensus 325 l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkk 404 (956)
..+....+...++......-+|+..++.|+.++. +|+..++.
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~--------------------------------------~LrG~~E~ 79 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDID--------------------------------------SLRGQIQE 79 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--------------------------------------HHhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc---CCCCCCCCCCCCCCCCCCCCccccccCCCCCCCC
Q 002175 405 RDALIERLHEENEKLFDRLTEKAS---SVSSPQLSSPLSKGSVNVQPRDMARNDNNNKGLP 462 (956)
Q Consensus 405 ree~LErL~eE~ekL~qrL~eK~S---sgsspq~~Sp~s~~s~~~q~~~~~r~~~~~~~~~ 462 (956)
..-+++++.+....++..|+++.. ...++....+...++....+.+..-....+...+
T Consensus 80 ~~~~l~~~~~rq~~~y~dld~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (263)
T PRK10803 80 NQYQLNQVVERQKQIYLQIDSLSSGGAAAQSTSGDQSGAAASATPAADAGTANAGAPVQSG 140 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccCCCccccccCcccccccCCCCCC
No 472
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=29.28 E-value=9.1e+02 Score=27.62 Aligned_cols=15 Identities=27% Similarity=0.118 Sum_probs=6.6
Q ss_pred HHHHhcCccchhhhh
Q 002175 552 AFIRKMEPTRVMDTM 566 (956)
Q Consensus 552 ~~~~~~~~~~~~~~~ 566 (956)
+.|--|-..++|+.|
T Consensus 315 g~~~~~~~~~~~~~~ 329 (338)
T KOG3647|consen 315 GKIMGMSGMSGMSGM 329 (338)
T ss_pred hcccCCCcccccccc
Confidence 334444444444443
No 473
>PRK11546 zraP zinc resistance protein; Provisional
Probab=29.08 E-value=2e+02 Score=29.65 Aligned_cols=17 Identities=6% Similarity=0.311 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002175 342 TIKTLQAKINSIESQRN 358 (956)
Q Consensus 342 eIe~LqeEik~LE~qL~ 358 (956)
+|..+..||..|+.++.
T Consensus 90 kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 90 KINAVAKEMENLRQSLD 106 (143)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 474
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=29.06 E-value=1.1e+03 Score=28.68 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=23.6
Q ss_pred hhhhhhhhhHHHHHhhhcCccccccccCcchhhhhccCCCCCCCCCC
Q 002175 565 TMLVSRVRILYIRSLLARSPELQSIMVSPVECFLEKSNTGRSRSSSR 611 (956)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (956)
+||-+=|+|+- + -+-|+||.-+-.|-|++-+.+.
T Consensus 445 ~~le~v~~~~~------------~-ln~~lerLq~~~N~~~~v~~~~ 478 (554)
T KOG4677|consen 445 IGLERVVEILH------------K-LNAPLERLQEYVNLVEDVDTKL 478 (554)
T ss_pred HHHHHHHHHHh------------h-hhhhHHHHHHHhccccccceee
Confidence 56666666653 2 2558899999999887766554
No 475
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=29.00 E-value=6.1e+02 Score=29.57 Aligned_cols=20 Identities=20% Similarity=0.224 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002175 340 DSTIKTLQAKINSIESQRNE 359 (956)
Q Consensus 340 e~eIe~LqeEik~LE~qL~e 359 (956)
.+.++++++++++.+..+.+
T Consensus 67 ~~~i~~L~~~Ik~r~~~l~D 86 (330)
T PF07851_consen 67 RELIEKLEEDIKERRCQLFD 86 (330)
T ss_pred HHHHHHHHHHHHHHHhhHHH
Confidence 34455555555555554443
No 476
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=28.88 E-value=6.5e+02 Score=25.82 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002175 332 QKMQIQQRDSTIKTLQAKINSIESQRNEALH 362 (956)
Q Consensus 332 lk~qlqe~e~eIe~LqeEik~LE~qL~el~~ 362 (956)
.-..+..++..+..+..++.+||..+..+..
T Consensus 102 ~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 102 QPSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666655544
No 477
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=28.81 E-value=8.4e+02 Score=30.89 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 247 ELYEREKEIQDLKQEILGLRQALKEANDQC 276 (956)
Q Consensus 247 el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~ 276 (956)
+-.++..+|.+|+.+|..++.+++....+.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~ 109 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREV 109 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777776654443
No 478
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.67 E-value=4.7e+02 Score=27.39 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002175 333 KMQIQQRDSTIKTLQAKINSIESQRNEAL 361 (956)
Q Consensus 333 k~qlqe~e~eIe~LqeEik~LE~qL~el~ 361 (956)
+.++++.+++++..+.+++.|+.|.+.+.
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444554444433
No 479
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=28.63 E-value=7.7e+02 Score=26.56 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 321 QVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ 356 (956)
Q Consensus 321 ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~q 356 (956)
+...+......++..+.+.+..+..|+.++..++.+
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444333
No 480
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.49 E-value=7.4e+02 Score=26.35 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002175 251 REKEIQDLKQEILGLRQALKEAN 273 (956)
Q Consensus 251 ~~~eI~~Lq~EI~~Lk~~L~~~~ 273 (956)
+...+..|+.++..++..+....
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~ 89 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELE 89 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554443
No 481
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.40 E-value=4.9e+02 Score=27.23 Aligned_cols=17 Identities=12% Similarity=0.458 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002175 338 QRDSTIKTLQAKINSIE 354 (956)
Q Consensus 338 e~e~eIe~LqeEik~LE 354 (956)
..+..++.++++.+.+.
T Consensus 172 ~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 172 KKEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 482
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=27.99 E-value=20 Score=43.35 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 002175 257 DLKQEILGLRQALKE 271 (956)
Q Consensus 257 ~Lq~EI~~Lk~~L~~ 271 (956)
++++||..|++.|..
T Consensus 373 ~YEqEI~~LkErL~~ 387 (495)
T PF12004_consen 373 KYEQEIQSLKERLRM 387 (495)
T ss_dssp ---------------
T ss_pred hHHHHHHHHHHHHHH
Confidence 344455555544443
No 483
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.99 E-value=9.3e+02 Score=27.73 Aligned_cols=30 Identities=33% Similarity=0.665 Sum_probs=21.7
Q ss_pred cccccccccccchhhhhHHHHhhhhcchhhhhhhhc
Q 002175 653 DQDTWRHQVTGGKLREIQEEAKSFATGNKALAALFV 688 (956)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (956)
....|.+.+ .++ ++...+-+|+--|||-||
T Consensus 292 E~~RW~~~~-----~~l-~~~~~~l~GD~llaaa~i 321 (344)
T PF12777_consen 292 EKERWSEQI-----EEL-EEQLKNLVGDSLLAAAFI 321 (344)
T ss_dssp HHHCCHCHH-----HHH-HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHH-----HHH-HHHhcccHHHHHHHHHHH
Confidence 466787754 333 555667799999999998
No 484
>PRK00846 hypothetical protein; Provisional
Probab=27.95 E-value=4.4e+02 Score=24.57 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 002175 397 KLEEELKKRDALIERLHEENEKLFDRLTEKASS 429 (956)
Q Consensus 397 kLeEELkkree~LErL~eE~ekL~qrL~eK~Ss 429 (956)
.|.+.+.++...|.++.+..+.|.++|.+..++
T Consensus 31 ~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s 63 (77)
T PRK00846 31 ELSEALADARLTGARNAELIRHLLEDLGKVRST 63 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 466666666777777777777888888887433
No 485
>PF14282 FlxA: FlxA-like protein
Probab=27.94 E-value=2.2e+02 Score=27.51 Aligned_cols=48 Identities=31% Similarity=0.382 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 313 EQNAQLRNQVAQLLQLEQEQKM----QIQQRDSTIKTLQAKINSIESQRNEA 360 (956)
Q Consensus 313 ee~~qLq~ql~~l~~~eeElk~----qlqe~e~eIe~LqeEik~LE~qL~el 360 (956)
..+..|++++..+.....++.. -.+.++.+++.|+.+|..|+.+|..+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444443 22344555555555555555555443
No 486
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=27.91 E-value=1.1e+03 Score=28.32 Aligned_cols=107 Identities=10% Similarity=0.076 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 249 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQL 328 (956)
Q Consensus 249 ~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~ 328 (956)
+.+-..+.+|+.-++.|+..+-.- .+.-....++...+.+..+..+ +.+.......+.-.|++..+...+.
T Consensus 216 d~Ll~kVdDLQD~VE~LRkDV~~R--gvRp~~~qle~v~kdi~~a~~~-------L~~m~~~i~~~kp~WkKiWE~EL~~ 286 (424)
T PF03915_consen 216 DRLLTKVDDLQDLVEDLRKDVVQR--GVRPSPKQLETVAKDISRASKE-------LKKMKEYIKTEKPIWKKIWESELQK 286 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--CCcCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 344455566666666665544322 2222222333333333333333 3333333333344444443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 002175 329 EQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 364 (956)
Q Consensus 329 eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~ 364 (956)
.-+-+..+...+..+..|++.++.+..-+.....-.
T Consensus 287 V~eEQqfL~~QedL~~DL~eDl~k~~etf~lveq~~ 322 (424)
T PF03915_consen 287 VCEEQQFLKLQEDLLSDLKEDLKKASETFALVEQCT 322 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445667777777777777666555533
No 487
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=27.89 E-value=20 Score=43.56 Aligned_cols=71 Identities=18% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 288 KVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 358 (956)
Q Consensus 288 k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~ 358 (956)
+++..+++++..++.+|..-...+......|+..........+-++.+|.+++..|..++.+|..++..+-
T Consensus 456 k~~d~iqEDid~M~~El~~W~~e~~~~~~~l~~e~~~t~~~~~pl~~~L~ele~~I~~~~~~i~~~ka~Il 526 (539)
T PF10243_consen 456 KLMDYIQEDIDSMQKELEMWRSEYRQHAEALQEEQSITDEALEPLKAQLAELEQQIKDQQDKICAVKANIL 526 (539)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777666666665555555555555555555555566888888888888888888888777663
No 488
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=27.52 E-value=1.2e+03 Score=28.25 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=32.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 002175 390 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKAS 428 (956)
Q Consensus 390 d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK~S 428 (956)
++.....+|+-.+++..++|......-+.+...|..|.+
T Consensus 282 etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~ 320 (421)
T KOG2685|consen 282 ETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEG 320 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccc
Confidence 556677788888888888999889999999999998833
No 489
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=26.35 E-value=8.1e+02 Score=27.39 Aligned_cols=132 Identities=11% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHhcccccccCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH------------HH
Q 002175 217 FSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNE------------VQ 284 (956)
Q Consensus 217 FAsrAK~I~~~~~n~~~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~E------------lq 284 (956)
|..-+........+................++.....++..|+.++..++.+++........-..- .+
T Consensus 106 F~~eI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~ 185 (301)
T PF14362_consen 106 FEKEIDQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYK 185 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHH
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 285 KAWKVSFTLQSDLKSENYMLADKHKIEK----EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQA 348 (956)
Q Consensus 285 ~~~k~~~eLE~eL~~e~~~Leek~k~~k----ee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~Lqe 348 (956)
.........+.++...+..+........ .+...+...........+.........-.++..|.+
T Consensus 186 ~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~ 253 (301)
T PF14362_consen 186 EKRAQLDAAQAELDTLQAQIDAAIAALDAQIAARKARLDEARQAKVAEFQAIISANDGFLARLEALWE 253 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
No 490
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=26.22 E-value=2.5e+02 Score=32.33 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCc
Q 002175 297 LKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMP 376 (956)
Q Consensus 297 L~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~ 376 (956)
+...-...+.............+..+..+......++.+.+....+...++.+++..+.++.....-...
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~---------- 288 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISG---------- 288 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh----------
Q ss_pred cccccccccccccChhHHHHHHHHHHHHH
Q 002175 377 AVSSVLRTTGDGMDSSAVSKKLEEELKKR 405 (956)
Q Consensus 377 ~s~s~~k~~ee~~d~s~l~kkLeEELkkr 405 (956)
+..+-..|......+++++..+
T Consensus 289 -------L~~E~~RW~~~~~~l~~~~~~l 310 (344)
T PF12777_consen 289 -------LSGEKERWSEQIEELEEQLKNL 310 (344)
T ss_dssp -------CHHHHHCCHCHHHHHHHHHHHH
T ss_pred -------hcchhhhHHHHHHHHHHHhccc
No 491
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=25.98 E-value=7.2e+02 Score=29.07 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHH
Q 002175 316 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVS 395 (956)
Q Consensus 316 ~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~ 395 (956)
.-++.-+.........+..++..+..+.+.|+.++.++..++++....... ....+.
T Consensus 126 e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~-----------------------~E~~L~ 182 (342)
T PF06632_consen 126 EVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEE-----------------------HEEDLY 182 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 396 KKLEEELKKRDALIERLHEENEKLFD 421 (956)
Q Consensus 396 kkLeEELkkree~LErL~eE~ekL~q 421 (956)
.|-..=|..++.+|.+|+.....+..
T Consensus 183 ~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 183 AKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhc
No 492
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=25.92 E-value=5.2e+02 Score=23.73 Aligned_cols=73 Identities=25% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 248 LYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQ 327 (956)
Q Consensus 248 l~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~ 327 (956)
+.+.+..|..|+.|+-.|+-.+-...........+-. .....++-.|+..+..+..
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~------------------------~~~~keNieLKve~~~L~~ 57 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESI------------------------EELLKENIELKVEVESLKR 57 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccH------------------------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002175 328 LEQEQKMQIQQRDSTIK 344 (956)
Q Consensus 328 ~eeElk~qlqe~e~eIe 344 (956)
..++++..+.+.+..++
T Consensus 58 el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 58 ELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHHHhh
No 493
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=25.89 E-value=2.9e+02 Score=32.93 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHH
Q 002175 334 MQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLH 413 (956)
Q Consensus 334 ~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LErL~ 413 (956)
..+-+.+.+...++.+++.|+.+.++.-+.... ..+..++.+......+++.++++.+++++..+.
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~--------------~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 93 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQ--------------AKRKGEDAEALIAEVKELKEEIKALEAELDELE 93 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhhccCCCC
Q 002175 414 EENEKLFDRLTEKASSVSS 432 (956)
Q Consensus 414 eE~ekL~qrL~eK~Ssgss 432 (956)
++...+...|++-..+..+
T Consensus 94 ~~~~~~~~~iPN~~~~~vP 112 (425)
T PRK05431 94 AELEELLLRIPNLPHDSVP 112 (425)
T ss_pred HHHHHHHHhCCCCCCccCC
No 494
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=25.84 E-value=2.3e+02 Score=31.04 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHH
Q 002175 330 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALI 409 (956)
Q Consensus 330 eElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~L 409 (956)
++...+..+.+.+++.++.+.++|..-+++.....+.. +++.+|...+.+|
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l-----------------------------~ie~~L~~v~~eI 178 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLL-----------------------------EIERELSRVRSEI 178 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH-----------------------------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhh
Q 002175 410 ERLHEENEKLFDRLT 424 (956)
Q Consensus 410 ErL~eE~ekL~qrL~ 424 (956)
+++..+...|.++++
T Consensus 179 e~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 179 EQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHhhc
No 495
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.83 E-value=4e+02 Score=26.05 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002175 294 QSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQA 348 (956)
Q Consensus 294 E~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~Lqe 348 (956)
..++-..-..++.....+..++..|+.++..+..+...++.+.+.....+..+..
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 496
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=25.63 E-value=5.9e+02 Score=24.26 Aligned_cols=105 Identities=14% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChh
Q 002175 313 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSS 392 (956)
Q Consensus 313 ee~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s 392 (956)
+....+..++.......-.-.-+.--.+..+...-+++..|-..-...........+........... ...
T Consensus 2 ~~L~~~~~Q~~~~l~~~~~~Ef~~I~~Er~v~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~---------i~a 72 (109)
T PF03980_consen 2 ESLESVHQQMIEFLEENCKKEFEEILEERDVVEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEED---------IRA 72 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHH---------HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 393 AVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 393 ~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
.+...+..++..++..++.+..+|..|.+.|.+.
T Consensus 73 ~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 73 HLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 497
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=25.60 E-value=1.1e+03 Score=27.47 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 002175 280 YNEVQKAWKVSFTLQSDL--KSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDS-TIKTLQAKINSIESQ 356 (956)
Q Consensus 280 ~~Elq~~~k~~~eLE~eL--~~e~~~Leek~k~~kee~~qLq~ql~~l~~~eeElk~qlqe~e~-eIe~LqeEik~LE~q 356 (956)
..+.-+....+-+++..+ ...+..+.-....+..+...+.-....++..............+ .-+++..-+.++++.
T Consensus 109 l~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkkk~~K~~dEelrqA~eKfEES 188 (366)
T KOG1118|consen 109 LIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKKKQGKIKDEELRQALEKFEES 188 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHH
Q ss_pred HHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCC
Q 002175 357 RNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASSVSSPQLS 436 (956)
Q Consensus 357 L~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK~Ssgsspq~~ 436 (956)
.+..+.+.-.. .+.+.+.++.+..-.+.+|.-.++-.+-|..-..+++.++... ++
T Consensus 189 kE~aE~sM~nl----------------le~d~eqvsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~r~r~a--------~~ 244 (366)
T KOG1118|consen 189 KELAEDSMFNL----------------LENDVEQVSQLSALIQAQLDFHRQSTQILQELQMKLFSRIRDA--------SS 244 (366)
T ss_pred HHHHHHHHHHH----------------HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--------hc
Q ss_pred CCCCCCCCCCCCccccccCCCCCCCCCccCC--CCcccccCCCeEEEeccCccccccCCch---------hhHHHhhhCC
Q 002175 437 SPLSKGSVNVQPRDMARNDNNNKGLPVDVAP--LPLSADKTEGTVALVKSSSEKIKTTPAG---------EYLTAALNDF 505 (956)
Q Consensus 437 Sp~s~~s~~~q~~~~~r~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 505 (956)
-|+-..+|+.-+.+. +.++.| | ...-.+||..+-----+++-.--++|-| .-..-||-||
T Consensus 245 ~prrey~p~~~~an~-----f~p~~~----p~~~~g~~s~T~~t~~~ass~~~is~~p~~~p~rs~s~~~~p~cralYdF 315 (366)
T KOG1118|consen 245 QPRREYVPRSVLANE-----FAPSGP----PIQLNGKLSKTTSTPQSASSPSNISPKPPSTPNRSASQMDQPCCRALYDF 315 (366)
T ss_pred CchhhcCCccccccc-----CCCCCC----ccccCCCCCcCccCccccCCcccCCCCCCCCCCcccCcccchhheeeecc
Q ss_pred CCc
Q 002175 506 NPE 508 (956)
Q Consensus 506 ~~~ 508 (956)
+|+
T Consensus 316 epe 318 (366)
T KOG1118|consen 316 EPE 318 (366)
T ss_pred CCC
No 498
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=25.57 E-value=8.9e+02 Score=26.29 Aligned_cols=173 Identities=20% Similarity=0.207 Sum_probs=0.0
Q ss_pred CHHHhHHHHHHHHHhcccccccCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
Q 002175 207 NMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQA------------LKEAND 274 (956)
Q Consensus 207 ~~eETLsTLrFAsrAK~I~~~~~n~~~i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~------------L~~~~~ 274 (956)
+|..|++.|.=+...+. -...+.+.+...-.++..++.++..++.. +.++..
T Consensus 22 ~l~~al~~L~~~~~~~~----------------~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq 85 (240)
T PF12795_consen 22 DLQQALSFLDEIKKQKK----------------RAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQ 85 (240)
T ss_pred HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHH
Q ss_pred HhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 002175 275 QCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQL-----EQEQKMQIQQRDSTIKTLQAK 349 (956)
Q Consensus 275 q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~kee~~qLq~ql~~l~~~-----eeElk~qlqe~e~eIe~LqeE 349 (956)
........+.............+.......+.....+.+-...+..--..+... ..--..+....+.+...+..+
T Consensus 86 ~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~ 165 (240)
T PF12795_consen 86 RLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQ 165 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002175 350 INSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 426 (956)
Q Consensus 350 ik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~eK 426 (956)
+..++..+. ....+..-..-.+.-...+++++..+...|...|..+
T Consensus 166 ~~~le~el~-------------------------------s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~ 211 (240)
T PF12795_consen 166 IEMLEQELL-------------------------------SNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQK 211 (240)
T ss_pred HHHHHHHHH-------------------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.46 E-value=5.8e+02 Score=24.06 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhcccccccccCCCCcccccccccc
Q 002175 312 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDST------IKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTT 385 (956)
Q Consensus 312 kee~~qLq~ql~~l~~~eeElk~qlqe~e~e------Ie~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ 385 (956)
....+.+...+..+....+.++..+...... +.+|+.-=..|+..+.........
T Consensus 11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~------------------- 71 (100)
T PF01486_consen 11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQ------------------- 71 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHH-------------------
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002175 386 GDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTE 425 (956)
Q Consensus 386 ee~~d~s~l~kkLeEELkkree~LErL~eE~ekL~qrL~e 425 (956)
.+.+++..++.+...+.++|..|.+++.|
T Consensus 72 -----------~l~~~i~~l~~ke~~l~~en~~L~~~~~e 100 (100)
T PF01486_consen 72 -----------LLMEQIEELKKKERELEEENNQLRQKIEE 100 (100)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 500
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=25.37 E-value=23 Score=45.47 Aligned_cols=165 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002175 234 IKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKE 313 (956)
Q Consensus 234 i~k~k~~~~~~r~el~~~~~eI~~Lq~EI~~Lk~~L~~~~~q~~~l~~Elq~~~k~~~eLE~eL~~e~~~Leek~k~~ke 313 (956)
.+....-..+....++.....+..|......|..++..+..+............+....++.++......+.+..+.
T Consensus 182 ~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~--- 258 (859)
T PF01576_consen 182 RKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRA--- 258 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhh---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccccccChhH
Q 002175 314 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSA 393 (956)
Q Consensus 314 e~~qLq~ql~~l~~~eeElk~qlqe~e~eIe~LqeEik~LE~qL~el~~s~~~rs~~~~es~~~s~s~~k~~ee~~d~s~ 393 (956)
...|..++..+......++.++.+.......++..+..+..++..+....+. +...
T Consensus 259 -k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~-----------------------e~~~ 314 (859)
T PF01576_consen 259 -KQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEE-----------------------EAEQ 314 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH-----------------------Hhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002175 394 VSKKLEEELKKRDALIERLHEENEKLFDRLTE 425 (956)
Q Consensus 394 l~kkLeEELkkree~LErL~eE~ekL~qrL~e 425 (956)
....+++.-+++...+..+.+..+.+......
T Consensus 315 ~~EelEeaKKkL~~~L~el~e~le~~~~~~~~ 346 (859)
T PF01576_consen 315 RTEELEEAKKKLERKLQELQEQLEEANAKVSS 346 (859)
T ss_dssp --------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!