Query 002177
Match_columns 956
No_of_seqs 242 out of 356
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 18:16:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1356 Putative transcription 100.0 1E-174 2E-179 1497.8 29.5 644 191-922 227-885 (889)
2 PF10497 zf-4CXXC_R1: Zinc-fin 99.8 1.2E-20 2.6E-25 177.4 2.7 72 191-262 5-87 (105)
3 PF08879 WRC: WRC; InterPro: 99.6 1E-15 2.2E-20 124.6 2.5 42 17-58 1-42 (46)
4 PF02373 JmjC: JmjC domain, hy 99.5 2.5E-14 5.4E-19 131.9 4.0 82 763-860 31-114 (114)
5 PF13621 Cupin_8: Cupin-like d 98.9 2.3E-10 4.9E-15 117.8 1.2 40 825-864 207-249 (251)
6 smart00558 JmjC A domain famil 97.0 0.0006 1.3E-08 57.2 3.0 54 596-667 3-56 (57)
7 KOG2131 Uncharacterized conser 95.8 0.0096 2.1E-07 67.3 4.7 61 821-881 262-323 (427)
8 cd02340 ZZ_NBR1_like Zinc fing 95.1 0.012 2.6E-07 47.9 1.7 30 320-349 1-31 (43)
9 cd02339 ZZ_Mind_bomb Zinc fing 93.5 0.042 9.1E-07 45.4 1.7 30 320-349 1-32 (45)
10 cd02335 ZZ_ADA2 Zinc finger, Z 93.4 0.043 9.4E-07 45.6 1.6 29 321-349 2-32 (49)
11 cd02249 ZZ Zinc finger, ZZ typ 93.3 0.046 1E-06 44.8 1.7 32 321-352 2-34 (46)
12 COG1917 Uncharacterized conser 92.3 0.066 1.4E-06 51.7 1.6 55 799-858 59-115 (131)
13 PF07883 Cupin_2: Cupin domain 92.1 0.067 1.5E-06 45.4 1.2 26 828-853 38-63 (71)
14 KOG2130 Phosphatidylserine-spe 91.0 0.14 3E-06 57.5 2.4 60 807-868 242-304 (407)
15 cd02344 ZZ_HERC2 Zinc finger, 90.4 0.16 3.5E-06 42.1 1.7 31 320-350 1-33 (45)
16 PF00569 ZZ: Zinc finger, ZZ t 90.0 0.17 3.7E-06 41.6 1.5 35 318-352 3-39 (46)
17 COG0662 {ManC} Mannose-6-phosp 89.2 0.26 5.7E-06 48.0 2.5 41 826-866 74-114 (127)
18 cd02341 ZZ_ZZZ3 Zinc finger, Z 89.0 0.22 4.9E-06 41.7 1.6 31 321-351 2-36 (48)
19 smart00291 ZnF_ZZ Zinc-binding 88.9 0.23 5E-06 40.4 1.6 36 319-354 4-40 (44)
20 cd02345 ZZ_dah Zinc finger, ZZ 87.7 0.31 6.6E-06 40.8 1.6 33 320-352 1-35 (49)
21 cd02338 ZZ_PCMF_like Zinc fing 86.8 0.34 7.3E-06 40.5 1.4 31 320-350 1-33 (49)
22 cd02337 ZZ_CBP Zinc finger, ZZ 85.3 0.46 9.9E-06 38.6 1.4 29 321-350 2-31 (41)
23 TIGR03214 ura-cupin putative a 85.1 0.45 9.7E-06 52.0 1.7 32 821-852 212-243 (260)
24 PRK09943 DNA-binding transcrip 81.6 1.1 2.4E-05 46.0 2.8 60 799-864 124-183 (185)
25 cd02334 ZZ_dystrophin Zinc fin 79.1 1.2 2.5E-05 37.7 1.6 34 320-353 1-36 (49)
26 KOG1356 Putative transcription 78.0 1.2 2.6E-05 55.5 1.9 36 316-351 226-261 (889)
27 PRK13290 ectC L-ectoine syntha 77.9 1.5 3.3E-05 43.2 2.3 37 826-864 74-110 (125)
28 cd02343 ZZ_EF Zinc finger, ZZ 76.1 1.7 3.6E-05 36.8 1.7 31 320-350 1-32 (48)
29 cd00162 RING RING-finger (Real 75.8 2.3 4.9E-05 32.4 2.3 42 196-244 2-43 (45)
30 PF07649 C1_3: C1-like domain; 75.7 1.3 2.9E-05 33.2 1.0 27 321-347 2-29 (30)
31 TIGR00218 manA mannose-6-phosp 75.1 1.5 3.2E-05 48.8 1.5 15 832-846 156-170 (302)
32 PHA02926 zinc finger-like prot 74.5 1.3 2.9E-05 47.9 1.0 53 192-245 169-228 (242)
33 PF01050 MannoseP_isomer: Mann 74.3 1.9 4.1E-05 44.0 1.9 22 832-853 107-128 (151)
34 COG4101 Predicted mannose-6-ph 73.4 1.6 3.4E-05 43.5 1.0 25 828-852 89-113 (142)
35 PRK15131 mannose-6-phosphate i 72.7 1.8 4E-05 50.2 1.6 18 829-846 239-256 (389)
36 PF13920 zf-C3HC4_3: Zinc fing 70.4 2.8 6.1E-05 34.5 1.8 43 194-244 3-45 (50)
37 PF13639 zf-RING_2: Ring finge 69.6 1.7 3.7E-05 34.7 0.3 30 206-243 15-44 (44)
38 PRK04190 glucose-6-phosphate i 69.2 3.4 7.5E-05 43.7 2.5 40 826-866 119-158 (191)
39 COG1482 ManA Phosphomannose is 66.0 3.1 6.7E-05 47.2 1.5 21 829-849 160-180 (312)
40 KOG0317 Predicted E3 ubiquitin 64.7 5.9 0.00013 44.5 3.3 47 191-246 237-283 (293)
41 PHA02929 N1R/p28-like protein; 63.0 5 0.00011 44.0 2.4 47 192-245 173-225 (238)
42 PLN02288 mannose-6-phosphate i 62.8 3.8 8.1E-05 47.8 1.5 16 831-846 255-270 (394)
43 smart00184 RING Ring finger. E 61.3 5.5 0.00012 29.1 1.7 26 211-242 14-39 (39)
44 PF00190 Cupin_1: Cupin; Inte 60.6 7.4 0.00016 38.4 2.9 39 828-866 81-126 (144)
45 TIGR01479 GMP_PMI mannose-1-ph 59.8 4.7 0.0001 47.7 1.6 41 824-864 412-452 (468)
46 PLN03208 E3 ubiquitin-protein 59.5 8.9 0.00019 40.9 3.4 51 192-245 17-77 (193)
47 KOG4582 Uncharacterized conser 58.9 4.9 0.00011 44.8 1.5 33 319-351 152-186 (278)
48 PF13248 zf-ribbon_3: zinc-rib 57.2 5.3 0.00011 29.3 0.9 25 319-343 2-26 (26)
49 cd02342 ZZ_UBA_plant Zinc fing 56.0 7.8 0.00017 32.3 1.8 31 320-350 1-33 (43)
50 KOG0320 Predicted E3 ubiquitin 54.0 20 0.00043 38.0 4.8 47 191-244 129-175 (187)
51 PF15227 zf-C3HC4_4: zinc fing 53.7 6.9 0.00015 31.7 1.2 28 212-242 15-42 (42)
52 PF13240 zinc_ribbon_2: zinc-r 53.2 6.7 0.00015 28.3 0.9 23 321-343 1-23 (23)
53 TIGR00599 rad18 DNA repair pro 52.9 9.9 0.00022 44.6 2.7 47 192-247 25-71 (397)
54 smart00154 ZnF_AN1 AN1-like Zi 52.4 9.2 0.0002 30.8 1.6 30 196-229 1-30 (39)
55 PRK15460 cpsB mannose-1-phosph 52.3 8.1 0.00018 46.2 1.9 45 823-867 420-464 (478)
56 PF14634 zf-RING_5: zinc-RING 50.8 14 0.0003 29.9 2.5 42 196-244 2-44 (44)
57 PTZ00194 60S ribosomal protein 50.1 7.2 0.00016 39.9 0.9 43 800-844 18-60 (143)
58 PF08007 Cupin_4: Cupin superf 50.0 14 0.00031 41.6 3.3 41 827-867 176-216 (319)
59 PF13923 zf-C3HC4_2: Zinc fing 49.9 13 0.00027 29.2 2.0 29 207-242 11-39 (39)
60 smart00249 PHD PHD zinc finger 49.5 13 0.00028 28.7 2.1 46 195-242 1-47 (47)
61 smart00835 Cupin_1 Cupin. This 48.5 14 0.0003 36.6 2.6 59 800-858 47-108 (146)
62 PF02041 Auxin_BP: Auxin bindi 48.0 10 0.00022 39.3 1.6 41 806-851 75-115 (167)
63 PF00097 zf-C3HC4: Zinc finger 46.3 9.3 0.0002 29.8 0.8 29 209-242 13-41 (41)
64 TIGR03214 ura-cupin putative a 43.9 16 0.00035 40.2 2.5 47 801-852 77-123 (260)
65 KOG2508 Predicted phospholipas 42.9 38 0.00083 39.5 5.2 38 489-526 34-74 (437)
66 TIGR03404 bicupin_oxalic bicup 42.2 21 0.00046 41.3 3.2 80 800-881 262-342 (367)
67 KOG2177 Predicted E3 ubiquitin 42.2 29 0.00062 35.8 3.9 44 191-243 11-54 (386)
68 KOG0457 Histone acetyltransfer 42.1 10 0.00022 44.7 0.6 32 318-349 13-46 (438)
69 PF00628 PHD: PHD-finger; Int 41.1 3.9 8.5E-05 33.4 -2.1 48 195-243 1-49 (51)
70 KOG0978 E3 ubiquitin ligase in 40.3 8.9 0.00019 47.7 -0.2 45 191-243 641-685 (698)
71 PF01238 PMI_typeI: Phosphoman 39.9 10 0.00022 43.8 0.2 16 831-846 254-269 (373)
72 KOG3899 Uncharacterized conser 38.8 12 0.00026 42.2 0.6 44 207-255 317-369 (381)
73 PF02938 GAD: GAD domain; Int 38.5 11 0.00024 35.2 0.2 71 768-849 22-93 (95)
74 COG5114 Histone acetyltransfer 38.4 8.9 0.00019 43.6 -0.5 30 320-349 6-37 (432)
75 PRK01191 rpl24p 50S ribosomal 37.9 14 0.00031 36.8 0.8 41 801-843 18-58 (120)
76 PF12861 zf-Apc11: Anaphase-pr 37.1 29 0.00064 32.8 2.7 48 192-244 31-79 (85)
77 PRK04023 DNA polymerase II lar 34.6 21 0.00046 46.1 1.8 30 191-222 624-657 (1121)
78 PF10571 UPF0547: Uncharacteri 34.5 24 0.00052 26.4 1.4 23 321-343 2-24 (26)
79 KOG0823 Predicted E3 ubiquitin 34.5 25 0.00054 38.6 2.0 47 192-244 46-92 (230)
80 KOG3905 Dynein light intermedi 33.1 19 0.00041 41.7 0.9 67 768-844 243-313 (473)
81 COG5432 RAD18 RING-finger-cont 32.9 23 0.00049 40.1 1.5 43 192-244 24-67 (391)
82 PRK10371 DNA-binding transcrip 32.9 31 0.00066 38.3 2.5 34 821-854 58-91 (302)
83 TIGR00570 cdk7 CDK-activating 32.7 41 0.00089 38.4 3.5 43 194-244 4-51 (309)
84 PRK13264 3-hydroxyanthranilate 32.6 31 0.00068 36.5 2.4 62 805-868 55-117 (177)
85 PF12678 zf-rbx1: RING-H2 zinc 32.5 35 0.00076 30.7 2.4 26 211-243 48-73 (73)
86 KOG1280 Uncharacterized conser 32.2 19 0.00042 41.5 0.8 34 316-349 5-40 (381)
87 TIGR03037 anthran_nbaC 3-hydro 31.1 33 0.00073 35.7 2.3 45 825-869 68-112 (159)
88 KOG2107 Uncharacterized conser 30.9 32 0.00069 36.2 2.0 55 775-846 80-135 (179)
89 PF10122 Mu-like_Com: Mu-like 30.6 24 0.00052 30.5 0.9 30 207-245 4-33 (51)
90 TIGR03404 bicupin_oxalic bicup 29.4 57 0.0012 37.9 4.0 53 825-881 108-165 (367)
91 PF10272 Tmpp129: Putative tra 29.1 39 0.00084 39.3 2.6 54 191-245 269-349 (358)
92 PF13216 DUF4024: Protein of u 28.7 28 0.00061 27.2 0.9 21 646-666 3-23 (35)
93 PF09567 RE_MamI: MamI restric 28.7 25 0.00053 39.1 0.9 22 320-341 83-104 (314)
94 PF06844 DUF1244: Protein of u 28.6 24 0.00051 32.0 0.6 13 217-229 11-23 (68)
95 smart00504 Ubox Modified RING 28.3 55 0.0012 27.5 2.7 42 195-245 3-44 (63)
96 PF05290 Baculo_IE-1: Baculovi 28.0 38 0.00082 34.6 2.0 44 313-356 73-119 (140)
97 KOG2583 Ubiquinol cytochrome c 28.0 37 0.0008 40.0 2.1 44 460-504 160-206 (429)
98 PF05899 Cupin_3: Protein of u 27.7 32 0.00069 30.8 1.2 17 828-844 45-61 (74)
99 PRK11171 hypothetical protein; 27.4 45 0.00097 36.8 2.6 28 824-851 98-125 (266)
100 PRK11171 hypothetical protein; 26.9 37 0.00079 37.5 1.8 32 821-852 217-248 (266)
101 cd00065 FYVE FYVE domain; Zinc 26.1 38 0.00083 28.2 1.4 34 194-228 3-38 (57)
102 PF12852 Cupin_6: Cupin 25.8 39 0.00085 34.5 1.7 43 799-851 37-79 (186)
103 TIGR01080 rplX_A_E ribosomal p 25.8 37 0.00081 33.6 1.5 43 800-844 13-55 (114)
104 PTZ00303 phosphatidylinositol 24.8 35 0.00076 43.1 1.3 33 193-226 460-499 (1374)
105 PF15446 zf-PHD-like: PHD/FYVE 24.7 59 0.0013 34.4 2.7 64 195-259 1-85 (175)
106 PF14446 Prok-RING_1: Prokaryo 24.7 31 0.00066 30.2 0.6 24 315-341 17-44 (54)
107 PRK14892 putative transcriptio 24.3 46 0.001 32.2 1.7 29 314-342 16-51 (99)
108 COG5219 Uncharacterized conser 23.8 31 0.00067 44.4 0.6 33 207-244 1488-1520(1525)
109 KOG1039 Predicted E3 ubiquitin 22.5 36 0.00077 39.4 0.7 52 192-244 160-218 (344)
110 PRK15457 ethanolamine utilizat 22.4 49 0.0011 36.5 1.7 73 764-850 144-216 (233)
111 PF02311 AraC_binding: AraC-li 22.3 57 0.0012 29.9 2.0 46 822-868 36-83 (136)
112 TIGR02297 HpaA 4-hydroxyphenyl 22.2 62 0.0013 34.8 2.5 32 821-852 56-87 (287)
113 PRK13306 ulaD 3-keto-L-gulonat 22.2 45 0.00097 35.8 1.4 65 854-937 6-71 (216)
114 PF03107 C1_2: C1 domain; Int 21.8 45 0.00096 25.3 0.9 26 322-347 3-29 (30)
115 KOG1814 Predicted E3 ubiquitin 21.4 72 0.0016 37.8 2.9 35 194-229 274-314 (445)
116 PF02318 FYVE_2: FYVE-type zin 21.4 17 0.00036 35.4 -1.8 51 186-242 47-100 (118)
117 PRK12380 hydrogenase nickel in 21.4 48 0.001 32.4 1.2 22 319-340 70-93 (113)
118 COG3492 Uncharacterized protei 21.0 34 0.00074 32.8 0.2 14 217-230 42-55 (104)
119 PF06249 EutQ: Ethanolamine ut 20.7 71 0.0015 33.2 2.3 21 824-844 110-130 (152)
120 PRK13503 transcriptional activ 20.2 52 0.0011 35.2 1.4 31 822-852 48-78 (278)
121 cd02336 ZZ_RSC8 Zinc finger, Z 20.1 71 0.0015 26.8 1.8 32 321-352 2-34 (45)
122 PF08990 Docking: Erythronolid 20.0 62 0.0014 24.6 1.3 16 773-788 3-18 (27)
No 1
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=100.00 E-value=9.7e-175 Score=1497.78 Aligned_cols=644 Identities=31% Similarity=0.506 Sum_probs=550.7
Q ss_pred cCCCCcccccccCCCCeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCCCccccccccccCccccccccc----CC
Q 002177 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCNCKACLRADNMIKVRIRE----IP 266 (956)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~CNCs~Clr~~g~~k~~~~e----~s 266 (956)
-.+.+||||.+..+..+-+|+.|+.+ ||.+|++.||+....++++.+|++|+..|||..|....++++|.+.. .+
T Consensus 227 g~~~mC~~C~~tlfn~hw~C~~C~~~-~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~al~~ 305 (889)
T KOG1356|consen 227 GIREMCDRCETTLFNIHWRCPRCGFG-VCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKGQCHALSELMPTQIIPGSALLD 305 (889)
T ss_pred CcchhhhhhcccccceeEEccccCCe-eeecchhhccccchHhHhhhhhhHHHHhcCCccccchhhcccccccchhhhhh
Confidence 46789999999888889999999965 99999999999999999999999999999999999999999998876 66
Q ss_pred cccchhhHH--HHHHhhhhhhhhhhhhhhhhhhhhhhhcccccc--ccccccCcccccccCCCccccccccccCCCCCcc
Q 002177 267 VLDKLQHLY--CLLSAVLPVVKQIHQIQCSEVELEKKLRGNEID--LARAKLSADEQMCCNICRIPIIDYHRHCGNCMYD 342 (956)
Q Consensus 267 ~~dKl~~~~--yll~~LLP~Lkqi~~EQ~~E~EiEAkIqG~~i~--i~~a~~~~DERvyCDnCkTSIvD~HRSCp~CsYD 342 (956)
..+++.++. |+|..++|+|+.++..|..+.+.||+|||.... ...+..+++|++|||+|.|||.|+||+||+|||.
T Consensus 306 ~~~~~h~~r~k~~I~~~cpcl~~~~~~~~~~~~~e~~vq~~~~~~~~~~~~~~~~e~~~~~~~~~si~~l~r~cP~~s~~ 385 (889)
T KOG1356|consen 306 LSDRVHAVREKFGIKAHCPCLKKQNKQQPLDAETEASVQGTEPTSKPPVTQANPEEPLYCDHCATSIGDLKRSCPDSSYA 385 (889)
T ss_pred HHHHHHHHHHHhhHHhhChhHHhhhhhccccHHHHHHHhcCCCCCCccccccCcCCCccccccccchhhccccCCCcccc
Confidence 777788887 999999999999999999999999999998533 3556777799999999999999999999999999
Q ss_pred hhhhhhHHhhhcccCCCCcccc-ccccc--c-cccchhhh--hhhhhhhhccccCCCCcccCCCCCccCCCCCCCCCCCC
Q 002177 343 LCLSCCQDLREASTSVGKEEFS-ENDRI--Q-DTENASEQ--VKTSKLRLNLLEKFPGWKANNDGSIPCPPNEYGGCGYR 416 (956)
Q Consensus 343 LCLsCC~ELR~g~l~~g~~~~~-~~~~~--~-~~~~~~~~--~~~~~~~~~~~~~~~~W~a~~dGsIpCpPke~ggCg~~ 416 (956)
+||.||.+||.|.+....+... +..+. . +.....+. ..++.. .. +. ++++|+|.|-|..++||+..
T Consensus 386 ~~l~~~~~i~~g~l~~~~e~~~~~~~r~~~~~~g~~~~~~~~~s~~~~-----~~-~~--~~~ng~~r~l~~~~~g~~~~ 457 (889)
T KOG1356|consen 386 ICLPWLADLRRGDLKEKEECELMLRSRGVKYEHGPDPIEPSLSSVSVD-----EP-SS--ANENGSLRDLLLSLAGCLDR 457 (889)
T ss_pred ccchHHHHhhcCCcccchhHHHHHHHHHHHhhcCccccccccCCCCCC-----CC-cc--cccccchhhcccccCccchh
Confidence 9999999999998876653221 11110 0 00000000 001110 01 12 88999999999999999999
Q ss_pred ccccccccccchHHHHHHHHHHHHhcCCcccCcCc-cccCCCCccccccccccCCCCCccccCCCcccCchhHHHHHHhh
Q 002177 417 SLNLSRIFKMNWVAKLVKNVEEMVSGCKVCDSETL-LNTGSYDHSLCQYAHREDRDGNFLYCPSSHDIRSEGIGNFRKHW 495 (956)
Q Consensus 417 ~L~L~~if~~~wi~~L~~~aee~~~~c~~~d~~~~-~~s~~~~~~l~kaA~Re~s~dN~lY~P~~~di~~~~l~hFQ~hW 495 (956)
.|.|+||||..|.+.|+.+||.-+...-..-.... ..+....+.++++|.|+.+.|||||||.+.+++.+||.|||+||
T Consensus 458 ~l~lkr~lpn~~~s~i~~~vE~k~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~cdn~Ll~l~~d~~~~~n~~~FQEhW 537 (889)
T KOG1356|consen 458 GLKLKRILPNILDSIIASVVENKLTSKLSKPPLRLCRSSQDGSGLLLSAASHSWLCDNRLLSLKVDPLNQNNLKHFQEHW 537 (889)
T ss_pred hhhhhhcCchHHHHHHHHHHHhhcccccCCchhhcCccccccccCccccCCCCcCCCCceecCccCccchhHHHHHHHHH
Confidence 99999999999999999999998865211111111 11112334578999999999999999999889999999999999
Q ss_pred hcCCCEEEeccccCCCCCCCChhhhhhhhhhhcccccccccCceEEEeCCCCCeeecchhhhccccCCCcccCCCCceee
Q 002177 496 VKGEPVIVKQVCDSSSMSIWDPKDIWRGIRETADEKTKDENRIVKAIDCLDWSEVDIELGEFIKGYSEGRVREDGWPEML 575 (956)
Q Consensus 496 ~kGePVIVr~Vl~~~s~lsW~P~~mwr~~~e~~~~~~~d~~~~vkaidCld~~ev~i~i~qFf~Gf~~gr~~~~g~p~mL 575 (956)
++|||||||||++++++++|+||+|||+|++.-..-..-.+.++.++||++ ++.+||.||++|+++++|||+||
T Consensus 538 kqGqPViVs~V~~~l~g~lW~P~a~~~~~g~q~~~l~n~~~~~i~s~d~~~------~fwegFe~~~kr~~~~~g~p~vL 611 (889)
T KOG1356|consen 538 KQGQPVIVSGVHKKLNGLLWKPEALSRAFGDQVVDLSNCNNSQIISNDCVD------NFWEGFEGYSKRLKSENGWPEVL 611 (889)
T ss_pred hcCCcEEehHhhhhccccccchHHHHHHhccchhhhhcCCCCCccccchhh------hHHHhhcccccCcccccCCeeEE
Confidence 999999999999999999999999999998764433323344566666666 68999999999999999999999
Q ss_pred eeCCCCCcchhHHhhhccchHHHhcCCcccccCCCCccccccccCCCCCCCCCCCCcccccccccccccCCCCcceeeee
Q 002177 576 KLKDWPSPSASEEFLLYHKPEFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFN 655 (956)
Q Consensus 576 KLKDWPps~~Fee~lP~h~~efi~aLP~~EYT~pr~G~LNLAs~LP~~~lkPDLGPK~YIAYG~~eelGrGdSvTkLH~D 655 (956)
|||||||+++|+++||+||+|||++|||||||| |+|.||||++||.+|++||||||||||||+++++||||||||||||
T Consensus 612 KLKDWpp~~~Fkd~lP~r~eell~sLPlpEYt~-r~G~LNlAs~LP~~fv~PDLGPk~y~AYG~~~e~gr~~gtTnLH~d 690 (889)
T KOG1356|consen 612 KLKDWPPGEDFKDMLPRRFEELLASLPLPEYTD-RDGKLNLASKLPEGFVRPDLGPKLYNAYGVSTELGRGDGTTNLHLD 690 (889)
T ss_pred eecCCCchHhHhhhhhHHHHHHHHcCCchhhhc-CCCccchHhhCcccccCCCCCchhhhhccccccccCCCCceeecee
Confidence 999999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeecccccCCCchhhhhhcccccccccccCCCCCccCCCCCCCCCCCCCCCCCchhhcccccchhhhhhhcCc
Q 002177 656 MPDMVYLLVHMGEVKLPTTEDEKIQSSSRESEVNESVGDPEKVSGEGSFPDLSLGGHDVNNEHVEKSATDEDEIMEDQGV 735 (956)
Q Consensus 656 mSDAVNIL~ht~ev~~~~~q~~~I~kl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 735 (956)
|||||||||||++++....|...|.|+.++ |++.+ ....
T Consensus 691 vSDaVNILvyv~e~~~~~~~~~~~~k~~~~----------------~~~de----------~~~~--------------- 729 (889)
T KOG1356|consen 691 VSDAVNILVYVGEPPGQIEQIAKVLKKIQE----------------GDLDE----------ITRS--------------- 729 (889)
T ss_pred hhhhhhheeeeccCCchHHhHHHHHHhhhh----------------cchhh----------hhhh---------------
Confidence 999999999999998855555444433211 11000 0000
Q ss_pred cccccccccccccccCCCCCCCCCCCCceeeeeccCCChhHHHHHHHHHHHHhCCCCCCCCCccCCCCcCCceecCHHHH
Q 002177 736 ETGTAEEKTVKSERLNGYSDVSEKTHPGAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHK 815 (956)
Q Consensus 736 ~~~~~~~~~~~~~~~~g~~~~~~~~~~GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~hPIHDQ~fYLt~ehk 815 (956)
+ ..+..+.+||||||||+|||||||+||+||++||+|. +.+|+||||||+||||.+||
T Consensus 730 -------------~-----~~~~~e~~GALWhIF~~~Dv~KireyL~k~~~E~~~~----~~~v~hPIhDQS~YLd~~lr 787 (889)
T KOG1356|consen 730 -------------R-----ISSVSETPGALWHIFRAQDVPKIREYLRKVCKEQGHE----VPKVHHPIHDQSWYLDRYLR 787 (889)
T ss_pred -------------h-----ccccccCCcchhhhhhhcchHHHHHHHHHhhHHhcCC----CCcccCCCcccceeccHHHH
Confidence 0 0124578999999999999999999999999999994 34589999999999999999
Q ss_pred HHHHHHhCccceEEEeecCceEEecCCCccccccccccceeeccccCCCCHHHHHHHHHHHhcCCcchHHHHHHHHHHhh
Q 002177 816 RKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQR 895 (956)
Q Consensus 816 ~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~aK~d~le~~~~ 895 (956)
+|||||||||||||+|+||||||||||||||||||+||||||+||||||||.|||+||+|||+||++|.+++||||
T Consensus 788 ~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQVrNLkSCikVa~DFVSPE~v~ec~rLT~EfR~Lp~~h~~~eDKLq---- 863 (889)
T KOG1356|consen 788 RRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQVRNLKSCIKVAEDFVSPEHVSECFRLTQEFRQLPQNHKNHEDKLQ---- 863 (889)
T ss_pred HHHHHHhCCCccchhhcccceEEecCCCcHHhhhhhhHHHHHHhhCChhhHHHHHHHHHHHhhCCCcccchHHHHH----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccC
Q 002177 896 KLFQEVGKISLYAASSAIKEVQKLVLD 922 (956)
Q Consensus 896 ~~~~~Vkkm~lyA~~~avke~~~l~~~ 922 (956)
||+|++||+..||++|+.+..+
T Consensus 864 -----vK~mi~hAVk~Av~~L~~~~s~ 885 (889)
T KOG1356|consen 864 -----VKNMIYHAVKDAVGTLKEAESS 885 (889)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999987654
No 2
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=99.80 E-value=1.2e-20 Score=177.44 Aligned_cols=72 Identities=32% Similarity=0.787 Sum_probs=64.7
Q ss_pred cCCCCcccccccCCCCeEEc------CcCC--CccccHhHHhhhcCCCchhh---hhhcCCCCCCccccccccccCcccc
Q 002177 191 TGGQICHQCRRNDRERVVWC------VKCD--KRGYCDSCISTWYSDIPLEE---LEKVCPACRGSCNCKACLRADNMIK 259 (956)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C------~~C~--r~~FC~~CL~~rY~e~~~ed---v~~~CP~Crg~CNCs~Clr~~g~~k 259 (956)
..|.+||||||||.+..+.| .+|. ++.||+.||.+||+|+.+|. .+|.||+|||||||++|++++|+.+
T Consensus 5 ~~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk~g~~P 84 (105)
T PF10497_consen 5 VNGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRKRGWAP 84 (105)
T ss_pred CCCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhccCCCCC
Confidence 58999999999999999999 7782 37899999999999976653 4699999999999999999999999
Q ss_pred ccc
Q 002177 260 VRI 262 (956)
Q Consensus 260 ~~~ 262 (956)
|++
T Consensus 85 Tg~ 87 (105)
T PF10497_consen 85 TGI 87 (105)
T ss_pred cHH
Confidence 984
No 3
>PF08879 WRC: WRC; InterPro: IPR014977 WRC is named after the conserved Trp-Arg-Cys motif, it contains two distinctive features: a putative nuclear localisation signal and a zinc-finger motif (C3H). It is suggested that WRC functions in DNA binding []. ; GO: 0005515 protein binding
Probab=99.56 E-value=1e-15 Score=124.63 Aligned_cols=42 Identities=38% Similarity=0.921 Sum_probs=39.8
Q ss_pred CCCCCCcccCCCCcceecCcCCCCchhHHHHHHhhhhhhhhH
Q 002177 17 IPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKRRAANS 58 (956)
Q Consensus 17 ~p~~~rc~r~dgk~wrc~~~~~~~~~~ce~h~~~~~~~~~~~ 58 (956)
+||++||+|+|||+|||+++|+++++|||+|++++++|+++.
T Consensus 1 d~e~~RC~R~DGK~WrC~~~a~~g~~~Ce~H~~~~r~r~~~~ 42 (46)
T PF08879_consen 1 DPEPWRCRRNDGKGWRCSRRALPGYSLCEHHLDRGRSRSRKS 42 (46)
T ss_pred CCccceeeCCCCCccccCCccCCCccHHHHHHHHHhhccCCC
Confidence 589999999999999999999999999999999999998864
No 4
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.47 E-value=2.5e-14 Score=131.90 Aligned_cols=82 Identities=27% Similarity=0.478 Sum_probs=62.5
Q ss_pred ceeeeeccCCChhHHHHHHHHHHHHhCCCCCCCCCccCCC--CcCCceecCHHHHHHHHHHhCccceEEEeecCceEEec
Q 002177 763 GAHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHP--LYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIP 840 (956)
Q Consensus 763 GAlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~hP--IHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIP 840 (956)
..+|-+++++|.+++++|++++. . ..+| ++.+...+.++. ..+.||+.|+|+|++||+||||
T Consensus 31 ~k~W~~v~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~p~~----l~~~gi~~~~~~Q~~Ge~V~i~ 94 (114)
T PF02373_consen 31 SKVWYIVPPEDADKFEKFLRSKE--S----------QNCPQFLDHKNIFVSPEQ----LKKAGIPVYRFVQKPGEFVFIP 94 (114)
T ss_dssp EEEEEEE-GGGHHHHHHHHHHHH--H----------HHSTTGGCTGGEEEGHHH----HHHTTS--EEEEEETT-EEEE-
T ss_pred ceEeEEechhhhhhHHHHHhhcc--c----------ccccccccccccccceee----eeccCcccccceECCCCEEEEC
Confidence 46999999999999999999761 1 1223 344455555543 7789999999999999999999
Q ss_pred CCCccccccccccceeeccc
Q 002177 841 AGCPFQVRNLQSTVQLGLDF 860 (956)
Q Consensus 841 AGCPHQVRNLkSCIKVAlDF 860 (956)
+|++|||.|+-.||++|.+|
T Consensus 95 pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 95 PGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp TT-EEEEEESSSEEEEEEEE
T ss_pred CCceEEEEeCCceEEEEecC
Confidence 99999999999999999998
No 5
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=98.93 E-value=2.3e-10 Score=117.80 Aligned_cols=40 Identities=30% Similarity=0.505 Sum_probs=33.1
Q ss_pred cceEEEeecCceEEecCCCccccccc--cc-cceeeccccCCC
Q 002177 825 EPWSFEQHLGEAVFIPAGCPFQVRNL--QS-TVQLGLDFLFPE 864 (956)
Q Consensus 825 EpWtf~Q~lGEAVFIPAGCPHQVRNL--kS-CIKVAlDFVSPE 864 (956)
.+|.+++.+||++|||+|-.|||+|| .. ||.|...|..|.
T Consensus 207 ~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~~ 249 (251)
T PF13621_consen 207 PPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTPF 249 (251)
T ss_dssp -EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS-
T ss_pred ceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEecccc
Confidence 79999999999999999999999999 76 999999998764
No 6
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=96.96 E-value=0.0006 Score=57.17 Aligned_cols=54 Identities=33% Similarity=0.448 Sum_probs=43.4
Q ss_pred HHHhcCCcccccCCCCccccccccCCCCCCCCCCCCcccccccccccccCCCCcceeeeeccccceeeeecc
Q 002177 596 EFISKLPLLEYIHSRLGFLNVAAKLPHYSLQNDVGPKIYMSYGTYEELDRGNSVKNLHFNMPDMVYLLVHMG 667 (956)
Q Consensus 596 efi~aLP~~EYT~pr~G~LNLAs~LP~~~lkPDLGPK~YIAYG~~eelGrGdSvTkLH~DmSDAVNIL~ht~ 667 (956)
..+..||+ .+||+.+++.....|+. +|+.+|. .+|+|.+|+|+.|.||++.+.+
T Consensus 3 ~~l~~lP~---------~~~ll~~~~~~~~~~~~---~~~~~G~------~~s~t~~H~d~~~~~n~~~~~~ 56 (57)
T smart00558 3 NNLAKLPF---------KLNLLSDLPEDILGPDV---PYLYMGM------AGSVTPWHIDDYDLVNYLHQGA 56 (57)
T ss_pred chhhhCCC---------cchHHHHCCcccCCCCc---ceEEEeC------CCCccceeEcCCCeEEEEEecC
Confidence 35567777 68999999988888877 6666665 3789999999999999987653
No 7
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=95.81 E-value=0.0096 Score=67.35 Aligned_cols=61 Identities=26% Similarity=0.334 Sum_probs=50.1
Q ss_pred HhCccceEEEeecCceEEecCCCccccccccccceeeccccCCCCHHHHHH-HHHHHhcCCc
Q 002177 821 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVR-LAEEIRCLPN 881 (956)
Q Consensus 821 EyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~r-LteEfR~Lp~ 881 (956)
++.+.+.++-|.+||+||+|.|==|||-||-..|.|--.++--=|+..=.+ |-+++-.+.+
T Consensus 262 ~~~~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~~nl~~~w~~Lk~~y~a~~e 323 (427)
T KOG2131|consen 262 LFRGPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNATNLAWMWDALKEDYPALAE 323 (427)
T ss_pred ccccchhhhhccCCceeeccCccccccccccceeeecccccccccHHHHHHHHHhhhhhhhh
Confidence 445677899999999999999999999999999999999998888876655 4445554443
No 8
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=95.08 E-value=0.012 Score=47.93 Aligned_cols=30 Identities=40% Similarity=0.893 Sum_probs=28.0
Q ss_pred cccCCCccccccccccCCCC-CcchhhhhhH
Q 002177 320 MCCNICRIPIIDYHRHCGNC-MYDLCLSCCQ 349 (956)
Q Consensus 320 vyCDnCkTSIvD~HRSCp~C-sYDLCLsCC~ 349 (956)
|.||.|+++|..+.=.|..| .||||..|-.
T Consensus 1 v~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 1 VICDGCQGPIVGVRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCCCcCcCCeEECCCCCCccchHHhhC
Confidence 57999999999999999999 7999999976
No 9
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=93.49 E-value=0.042 Score=45.37 Aligned_cols=30 Identities=40% Similarity=1.074 Sum_probs=27.7
Q ss_pred cccCCCc-cccccccccCCCC-CcchhhhhhH
Q 002177 320 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQ 349 (956)
Q Consensus 320 vyCDnCk-TSIvD~HRSCp~C-sYDLCLsCC~ 349 (956)
+.||.|+ .+|+.+.=.|..| .||||..|-.
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 5799999 7899999999999 7999999987
No 10
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=93.36 E-value=0.043 Score=45.64 Aligned_cols=29 Identities=34% Similarity=0.960 Sum_probs=27.3
Q ss_pred ccCCCcccccc-ccccCCCC-CcchhhhhhH
Q 002177 321 CCNICRIPIID-YHRHCGNC-MYDLCLSCCQ 349 (956)
Q Consensus 321 yCDnCkTSIvD-~HRSCp~C-sYDLCLsCC~ 349 (956)
.||+|...|.. ++=.|..| .||||+.|-.
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcchhHHhhh
Confidence 59999999999 88899999 9999999987
No 11
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=93.30 E-value=0.046 Score=44.75 Aligned_cols=32 Identities=38% Similarity=0.879 Sum_probs=29.1
Q ss_pred ccCCCccccccccccCCCCC-cchhhhhhHHhh
Q 002177 321 CCNICRIPIIDYHRHCGNCM-YDLCLSCCQDLR 352 (956)
Q Consensus 321 yCDnCkTSIvD~HRSCp~Cs-YDLCLsCC~ELR 352 (956)
.||.|..+|...+=.|..|. ||||..|-.+-.
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence 59999999999999999999 999999987544
No 12
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=92.30 E-value=0.066 Score=51.68 Aligned_cols=55 Identities=24% Similarity=0.369 Sum_probs=43.6
Q ss_pred cCCCCcCCceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCcccccccccc--ceeec
Q 002177 799 VTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQST--VQLGL 858 (956)
Q Consensus 799 v~hPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSC--IKVAl 858 (956)
-.||-++|.+|...-. =+|.++.=+++=+.||.|+||||.+|-+.|..+. +.+++
T Consensus 59 H~hp~~~~~~~Vl~G~-----~~~~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v 115 (131)
T COG1917 59 HTHPLGEQTIYVLEGE-----GTVQLEGEKKELKAGDVIIIPPGVVHGLKAVEDEPMVLLLV 115 (131)
T ss_pred ccCCCcceEEEEEecE-----EEEEecCCceEecCCCEEEECCCCeeeeccCCCCceeEEEE
Confidence 3689889999998873 2355555666668999999999999999999999 55544
No 13
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=92.07 E-value=0.067 Score=45.38 Aligned_cols=26 Identities=42% Similarity=0.741 Sum_probs=22.3
Q ss_pred EEEeecCceEEecCCCcccccccccc
Q 002177 828 SFEQHLGEAVFIPAGCPFQVRNLQST 853 (956)
Q Consensus 828 tf~Q~lGEAVFIPAGCPHQVRNLkSC 853 (956)
++.=..||+++||||++|+++|..+-
T Consensus 38 ~~~l~~Gd~~~i~~~~~H~~~n~~~~ 63 (71)
T PF07883_consen 38 RVELKPGDAIYIPPGVPHQVRNPGDE 63 (71)
T ss_dssp EEEEETTEEEEEETTSEEEEEEESSS
T ss_pred EeEccCCEEEEECCCCeEEEEECCCC
Confidence 55557899999999999999998754
No 14
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=91.01 E-value=0.14 Score=57.50 Aligned_cols=60 Identities=25% Similarity=0.357 Sum_probs=48.0
Q ss_pred ceecCHHHHHHH---HHHhCccceEEEeecCceEEecCCCccccccccccceeeccccCCCCHHH
Q 002177 807 VVYLNGDHKRKL---KEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGE 868 (956)
Q Consensus 807 ~fYLt~ehk~kL---kEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 868 (956)
+||-+-.-+-+| -+||. |-...|.+||.||||.|==|=|-||--.|-|+..|+|=||.+-
T Consensus 242 twf~~~y~rt~~Pswp~E~k--PIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~ 304 (407)
T KOG2130|consen 242 TWFSTIYPRTQLPSWPDEYK--PIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPF 304 (407)
T ss_pred chhhhccccccCCCCccccC--CceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCce
Confidence 344444444442 34554 7788999999999999999999999999999999999999763
No 15
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=90.36 E-value=0.16 Score=42.14 Aligned_cols=31 Identities=32% Similarity=0.924 Sum_probs=27.7
Q ss_pred cccCCCcc-ccccccccCCCCC-cchhhhhhHH
Q 002177 320 MCCNICRI-PIIDYHRHCGNCM-YDLCLSCCQD 350 (956)
Q Consensus 320 vyCDnCkT-SIvD~HRSCp~Cs-YDLCLsCC~E 350 (956)
|-||.|.+ +|+-..=.|..|. ||||..|-..
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 56999985 8999999999998 9999999875
No 16
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=89.97 E-value=0.17 Score=41.62 Aligned_cols=35 Identities=40% Similarity=0.843 Sum_probs=26.6
Q ss_pred cccccCCCcc-ccccccccCCCCC-cchhhhhhHHhh
Q 002177 318 EQMCCNICRI-PIIDYHRHCGNCM-YDLCLSCCQDLR 352 (956)
Q Consensus 318 ERvyCDnCkT-SIvD~HRSCp~Cs-YDLCLsCC~ELR 352 (956)
..+.||.|++ +|.-..=.|..|. ||||..|-.+-+
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~ 39 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGR 39 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcC
Confidence 3578999999 9999999999998 999999987633
No 17
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=89.22 E-value=0.26 Score=48.03 Aligned_cols=41 Identities=29% Similarity=0.450 Sum_probs=31.4
Q ss_pred ceEEEeecCceEEecCCCccccccccccceeeccccCCCCH
Q 002177 826 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESV 866 (956)
Q Consensus 826 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV 866 (956)
.=.|+=+.||+|+||||.||.++|.-+.-=+.++=-+|+..
T Consensus 74 ~~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei~~p~~~ 114 (127)
T COG0662 74 GEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPYL 114 (127)
T ss_pred CEEEEecCCCEEEECCCCcEEEEcCCCcceEEEEEecCCcC
Confidence 56777789999999999999999999944444444455544
No 18
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=89.00 E-value=0.22 Score=41.72 Aligned_cols=31 Identities=39% Similarity=0.937 Sum_probs=28.1
Q ss_pred ccCCCcc-ccccccccCCCCC---cchhhhhhHHh
Q 002177 321 CCNICRI-PIIDYHRHCGNCM---YDLCLSCCQDL 351 (956)
Q Consensus 321 yCDnCkT-SIvD~HRSCp~Cs---YDLCLsCC~EL 351 (956)
-||+|.. +|+.+.=.|..|. ||||..|-..-
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~ 36 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKG 36 (48)
T ss_pred CCCCCCCCccccceEECCCCCCCCCccCHHHHhCc
Confidence 3999998 9999999999998 99999998754
No 19
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=88.94 E-value=0.23 Score=40.42 Aligned_cols=36 Identities=36% Similarity=0.824 Sum_probs=30.8
Q ss_pred ccccCCCccccccccccCCCC-CcchhhhhhHHhhhc
Q 002177 319 QMCCNICRIPIIDYHRHCGNC-MYDLCLSCCQDLREA 354 (956)
Q Consensus 319 RvyCDnCkTSIvD~HRSCp~C-sYDLCLsCC~ELR~g 354 (956)
.+.||.|...|....=.|..| .||||..|-.+-+.+
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~~~~ 40 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKGSAG 40 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCcCcC
Confidence 367999999999998899999 899999998855444
No 20
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=87.67 E-value=0.31 Score=40.83 Aligned_cols=33 Identities=36% Similarity=0.834 Sum_probs=28.2
Q ss_pred cccCCCcc-ccccccccCCCC-CcchhhhhhHHhh
Q 002177 320 MCCNICRI-PIIDYHRHCGNC-MYDLCLSCCQDLR 352 (956)
Q Consensus 320 vyCDnCkT-SIvD~HRSCp~C-sYDLCLsCC~ELR 352 (956)
+.||+|+. +|.-++=.|..| .||||+.|-..-+
T Consensus 1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~ 35 (49)
T cd02345 1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGR 35 (49)
T ss_pred CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCCC
Confidence 46999998 999998899888 4999999988443
No 21
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=86.82 E-value=0.34 Score=40.55 Aligned_cols=31 Identities=29% Similarity=0.745 Sum_probs=27.2
Q ss_pred cccCCCc-cccccccccCCCC-CcchhhhhhHH
Q 002177 320 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQD 350 (956)
Q Consensus 320 vyCDnCk-TSIvD~HRSCp~C-sYDLCLsCC~E 350 (956)
|.||.|+ .+|.-..=.|..| .||||+.|-..
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~ 33 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDS 33 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhC
Confidence 5799999 8999888888888 69999999873
No 22
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=85.35 E-value=0.46 Score=38.60 Aligned_cols=29 Identities=38% Similarity=1.051 Sum_probs=25.0
Q ss_pred ccCCCccccccccccCCCC-CcchhhhhhHH
Q 002177 321 CCNICRIPIIDYHRHCGNC-MYDLCLSCCQD 350 (956)
Q Consensus 321 yCDnCkTSIvD~HRSCp~C-sYDLCLsCC~E 350 (956)
-||.|.. |+-..+.|..| .||||..|-..
T Consensus 2 ~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 2 TCNECKH-HVETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred cCCCCCC-cCCCceECCCCcchhhHHHHhCC
Confidence 3999988 66799999999 89999999764
No 23
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=85.06 E-value=0.45 Score=52.03 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=25.3
Q ss_pred HhCccceEEEeecCceEEecCCCccccccccc
Q 002177 821 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (956)
Q Consensus 821 EyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (956)
.|.+..=..+=..||+|||||||||+..|.-+
T Consensus 212 ~~~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~ 243 (260)
T TIGR03214 212 VYNLDNNWVPVEAGDYIWMGAYCPQACYAGGR 243 (260)
T ss_pred EEEECCEEEEecCCCEEEECCCCCEEEEecCC
Confidence 34555556666789999999999999999743
No 24
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=81.64 E-value=1.1 Score=46.02 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=44.8
Q ss_pred cCCCCcCCceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccceeeccccCCC
Q 002177 799 VTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPE 864 (956)
Q Consensus 799 v~hPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 864 (956)
..||- ++.+|+-.-. -++-|..=++.-..||.++||||.||..+|..+.-=+++-+++|-
T Consensus 124 ~~h~~-~E~~~Vl~G~-----~~~~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~~~~p~ 183 (185)
T PRK09943 124 IKHQG-EEIGTVLEGE-----IVLTINGQDYHLVAGQSYAINTGIPHSFSNTSAGICRIISAHTPT 183 (185)
T ss_pred cccCC-cEEEEEEEeE-----EEEEECCEEEEecCCCEEEEcCCCCeeeeCCCCCCeEEEEEeCCC
Confidence 34443 5666665542 235667778889999999999999999999987766777777774
No 25
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=79.13 E-value=1.2 Score=37.65 Aligned_cols=34 Identities=44% Similarity=0.955 Sum_probs=27.7
Q ss_pred cccCCCcc-ccccccccCCCC-CcchhhhhhHHhhh
Q 002177 320 MCCNICRI-PIIDYHRHCGNC-MYDLCLSCCQDLRE 353 (956)
Q Consensus 320 vyCDnCkT-SIvD~HRSCp~C-sYDLCLsCC~ELR~ 353 (956)
|-||.|+. +|.-+.=.|..| .||||..|-..-+.
T Consensus 1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~ 36 (49)
T cd02334 1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRT 36 (49)
T ss_pred CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCc
Confidence 46999995 799988888887 49999999875443
No 26
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=77.98 E-value=1.2 Score=55.53 Aligned_cols=36 Identities=22% Similarity=0.760 Sum_probs=32.0
Q ss_pred cccccccCCCccccccccccCCCCCcchhhhhhHHh
Q 002177 316 ADEQMCCNICRIPIIDYHRHCGNCMYDLCLSCCQDL 351 (956)
Q Consensus 316 ~DERvyCDnCkTSIvD~HRSCp~CsYDLCLsCC~EL 351 (956)
...|-.|+.|-|++|++|-.|++|++-+||.|-+.-
T Consensus 226 ~g~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~ 261 (889)
T KOG1356|consen 226 KGIREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKW 261 (889)
T ss_pred cCcchhhhhhcccccceeEEccccCCeeeecchhhc
Confidence 345788999999999999999999999999987654
No 27
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=77.92 E-value=1.5 Score=43.24 Aligned_cols=37 Identities=8% Similarity=-0.059 Sum_probs=27.1
Q ss_pred ceEEEeecCceEEecCCCccccccccccceeeccccCCC
Q 002177 826 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPE 864 (956)
Q Consensus 826 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 864 (956)
.=++.=..||+++||||-||+.+|...|.=++. ++|.
T Consensus 74 g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v--~tP~ 110 (125)
T PRK13290 74 GEVHPIRPGTMYALDKHDRHYLRAGEDMRLVCV--FNPP 110 (125)
T ss_pred CEEEEeCCCeEEEECCCCcEEEEcCCCEEEEEE--ECCC
Confidence 344556789999999999999999855544333 5553
No 28
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=76.08 E-value=1.7 Score=36.83 Aligned_cols=31 Identities=26% Similarity=0.551 Sum_probs=25.0
Q ss_pred cccCCCccccccccccCCCC-CcchhhhhhHH
Q 002177 320 MCCNICRIPIIDYHRHCGNC-MYDLCLSCCQD 350 (956)
Q Consensus 320 vyCDnCkTSIvD~HRSCp~C-sYDLCLsCC~E 350 (956)
+.||.|...|.-+.=.|-.| .||||..|-..
T Consensus 1 i~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 1 ISCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 35999998888777677777 49999999863
No 29
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=75.78 E-value=2.3 Score=32.38 Aligned_cols=42 Identities=31% Similarity=0.817 Sum_probs=28.2
Q ss_pred cccccccCCCCeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCCC
Q 002177 196 CHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (956)
Q Consensus 196 CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (956)
|--|...- ...+.-..|+ -.||..|+..|+.. ....||.|+.
T Consensus 2 C~iC~~~~-~~~~~~~~C~-H~~c~~C~~~~~~~-----~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEF-REPVVLLPCG-HVFCRSCIDKWLKS-----GKNTCPLCRT 43 (45)
T ss_pred CCcCchhh-hCceEecCCC-ChhcHHHHHHHHHh-----CcCCCCCCCC
Confidence 44555443 2334445588 47999999998753 4567999985
No 30
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=75.70 E-value=1.3 Score=33.18 Aligned_cols=27 Identities=33% Similarity=0.894 Sum_probs=12.8
Q ss_pred ccCCCcccccc-ccccCCCCCcchhhhh
Q 002177 321 CCNICRIPIID-YHRHCGNCMYDLCLSC 347 (956)
Q Consensus 321 yCDnCkTSIvD-~HRSCp~CsYDLCLsC 347 (956)
.|+.|+.+|.. +.=+|+.|.|+|.+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 59999999998 8888999999999988
No 31
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=75.14 E-value=1.5 Score=48.84 Aligned_cols=15 Identities=27% Similarity=0.793 Sum_probs=13.7
Q ss_pred ecCceEEecCCCccc
Q 002177 832 HLGEAVFIPAGCPFQ 846 (956)
Q Consensus 832 ~lGEAVFIPAGCPHQ 846 (956)
+.||+||||||.||=
T Consensus 156 ~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 156 KPGDFFYVPSGTPHA 170 (302)
T ss_pred CCCCEEEeCCCCccc
Confidence 469999999999996
No 32
>PHA02926 zinc finger-like protein; Provisional
Probab=74.54 E-value=1.3 Score=47.92 Aligned_cols=53 Identities=21% Similarity=0.483 Sum_probs=33.3
Q ss_pred CCCCcccccccCCCC-eEEc------CcCCCccccHhHHhhhcCCCchhhhhhcCCCCCCc
Q 002177 192 GGQICHQCRRNDRER-VVWC------VKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (956)
Q Consensus 192 ~~~~CHQCrqkt~~~-~v~C------~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~ 245 (956)
....|-=|...-... ...+ ..|+ -.||..||..|-..-....+...||.||..
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~ 228 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCN-HIFCITCINIWHRTRRETGASDNCPICRTR 228 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCC-chHHHHHHHHHHHhccccCcCCcCCCCcce
Confidence 345677777542111 1112 2577 489999999998743223456789999974
No 33
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=74.30 E-value=1.9 Score=44.00 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.6
Q ss_pred ecCceEEecCCCcccccccccc
Q 002177 832 HLGEAVFIPAGCPFQVRNLQST 853 (956)
Q Consensus 832 ~lGEAVFIPAGCPHQVRNLkSC 853 (956)
..||.||||+|+.|++.|.-+.
T Consensus 107 ~~g~sv~Ip~g~~H~i~n~g~~ 128 (151)
T PF01050_consen 107 KEGDSVYIPRGAKHRIENPGKT 128 (151)
T ss_pred cCCCEEEECCCCEEEEECCCCc
Confidence 5799999999999999998654
No 34
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=73.38 E-value=1.6 Score=43.46 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.6
Q ss_pred EEEeecCceEEecCCCccccccccc
Q 002177 828 SFEQHLGEAVFIPAGCPFQVRNLQS 852 (956)
Q Consensus 828 tf~Q~lGEAVFIPAGCPHQVRNLkS 852 (956)
+.+-..||...||+|.|||--||.+
T Consensus 89 ha~~~pGDf~YiPpgVPHqp~N~S~ 113 (142)
T COG4101 89 HAEVGPGDFFYIPPGVPHQPANLST 113 (142)
T ss_pred eEEecCCCeEEcCCCCCCcccccCC
Confidence 5677899999999999999999974
No 35
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=72.67 E-value=1.8 Score=50.18 Aligned_cols=18 Identities=33% Similarity=0.504 Sum_probs=15.4
Q ss_pred EEeecCceEEecCCCccc
Q 002177 829 FEQHLGEAVFIPAGCPFQ 846 (956)
Q Consensus 829 f~Q~lGEAVFIPAGCPHQ 846 (956)
+.=++|||||||||.||=
T Consensus 239 v~l~pGeaifipAg~~HA 256 (389)
T PRK15131 239 VKLNPGEAMFLFAETPHA 256 (389)
T ss_pred EEeCCCCEEEeCCCCCeE
Confidence 344689999999999997
No 36
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=70.36 E-value=2.8 Score=34.48 Aligned_cols=43 Identities=30% Similarity=0.766 Sum_probs=31.3
Q ss_pred CCcccccccCCCCeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCCC
Q 002177 194 QICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (956)
Q Consensus 194 ~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (956)
..|.-|...... +.-..|+-..||..|+.+++. ....||.||.
T Consensus 3 ~~C~iC~~~~~~--~~~~pCgH~~~C~~C~~~~~~------~~~~CP~Cr~ 45 (50)
T PF13920_consen 3 EECPICFENPRD--VVLLPCGHLCFCEECAERLLK------RKKKCPICRQ 45 (50)
T ss_dssp SB-TTTSSSBSS--EEEETTCEEEEEHHHHHHHHH------TTSBBTTTTB
T ss_pred CCCccCCccCCc--eEEeCCCChHHHHHHhHHhcc------cCCCCCcCCh
Confidence 467788877654 333468864599999999976 4578999986
No 37
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=69.64 E-value=1.7 Score=34.74 Aligned_cols=30 Identities=37% Similarity=0.921 Sum_probs=21.6
Q ss_pred CeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCC
Q 002177 206 RVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (956)
Q Consensus 206 ~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (956)
.++... |+ -.||..||..|... ...||.||
T Consensus 15 ~~~~l~-C~-H~fh~~Ci~~~~~~------~~~CP~CR 44 (44)
T PF13639_consen 15 KVVKLP-CG-HVFHRSCIKEWLKR------NNSCPVCR 44 (44)
T ss_dssp CEEEET-TS-EEEEHHHHHHHHHH------SSB-TTTH
T ss_pred eEEEcc-CC-CeeCHHHHHHHHHh------CCcCCccC
Confidence 344444 88 59999999999853 24999997
No 38
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=69.16 E-value=3.4 Score=43.71 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=30.2
Q ss_pred ceEEEeecCceEEecCCCccccccccccceeeccccCCCCH
Q 002177 826 PWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESV 866 (956)
Q Consensus 826 pWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV 866 (956)
.+.+.=..||+|+||+|..|++.|.-+.-=+.+- |.|...
T Consensus 119 ~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~-v~p~~~ 158 (191)
T PRK04190 119 ARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLA-CYPADA 158 (191)
T ss_pred EEEEEECCCCEEEECCCCcEEeEECCCCCEEEEE-EEcCCc
Confidence 7889999999999999999999998754433333 344333
No 39
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=65.96 E-value=3.1 Score=47.20 Aligned_cols=21 Identities=38% Similarity=0.657 Sum_probs=17.3
Q ss_pred EEeecCceEEecCCCcccccc
Q 002177 829 FEQHLGEAVFIPAGCPFQVRN 849 (956)
Q Consensus 829 f~Q~lGEAVFIPAGCPHQVRN 849 (956)
+.=++|||+|||||.||=.-.
T Consensus 160 v~lkpGe~~fl~Agt~HA~~~ 180 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHAYLK 180 (312)
T ss_pred EecCCCCEEEecCCCceeecc
Confidence 555789999999999997433
No 40
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.75 E-value=5.9 Score=44.45 Aligned_cols=47 Identities=30% Similarity=0.675 Sum_probs=37.0
Q ss_pred cCCCCcccccccCCCCeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCCCcc
Q 002177 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSC 246 (956)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~C 246 (956)
.+...|-=|--... --.|+=|| -.||-.||.-|-.+.++ ||.||--|
T Consensus 237 ~a~~kC~LCLe~~~--~pSaTpCG-HiFCWsCI~~w~~ek~e------CPlCR~~~ 283 (293)
T KOG0317|consen 237 EATRKCSLCLENRS--NPSATPCG-HIFCWSCILEWCSEKAE------CPLCREKF 283 (293)
T ss_pred CCCCceEEEecCCC--CCCcCcCc-chHHHHHHHHHHccccC------CCcccccC
Confidence 46678999987664 33678899 58999999999998544 99999754
No 41
>PHA02929 N1R/p28-like protein; Provisional
Probab=62.96 E-value=5 Score=43.96 Aligned_cols=47 Identities=23% Similarity=0.696 Sum_probs=31.6
Q ss_pred CCCCcccccccCCC------CeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCCCc
Q 002177 192 GGQICHQCRRNDRE------RVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (956)
Q Consensus 192 ~~~~CHQCrqkt~~------~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~ 245 (956)
....|-=|...-.. ....=..|+ -.||..||..|... .-.||.||..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-H~FC~~CI~~Wl~~------~~tCPlCR~~ 225 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-HVFCIECIDIWKKE------KNTCPVCRTP 225 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-CcccHHHHHHHHhc------CCCCCCCCCE
Confidence 34677777664221 122334688 48999999999764 3479999973
No 42
>PLN02288 mannose-6-phosphate isomerase
Probab=62.77 E-value=3.8 Score=47.84 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=14.4
Q ss_pred eecCceEEecCCCccc
Q 002177 831 QHLGEAVFIPAGCPFQ 846 (956)
Q Consensus 831 Q~lGEAVFIPAGCPHQ 846 (956)
=.+|||||||||.||=
T Consensus 255 L~PGeaifl~ag~~HA 270 (394)
T PLN02288 255 LNPGEALYLGANEPHA 270 (394)
T ss_pred cCCCCEEEecCCCCce
Confidence 3589999999999996
No 43
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=61.26 E-value=5.5 Score=29.09 Aligned_cols=26 Identities=35% Similarity=1.124 Sum_probs=19.6
Q ss_pred CcCCCccccHhHHhhhcCCCchhhhhhcCCCC
Q 002177 211 VKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (956)
Q Consensus 211 ~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (956)
..|+ -.||..|+..|+. .....||.|
T Consensus 14 ~~C~-H~~c~~C~~~~~~-----~~~~~CP~C 39 (39)
T smart00184 14 LPCG-HTFCRSCIRKWLK-----SGNNTCPIC 39 (39)
T ss_pred ecCC-ChHHHHHHHHHHH-----hCcCCCCCC
Confidence 4588 4799999999876 234569887
No 44
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=60.56 E-value=7.4 Score=38.43 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=26.9
Q ss_pred EEEee----cCceEEecCCCccccccc--cccceeecccc-CCCCH
Q 002177 828 SFEQH----LGEAVFIPAGCPFQVRNL--QSTVQLGLDFL-FPESV 866 (956)
Q Consensus 828 tf~Q~----lGEAVFIPAGCPHQVRNL--kSCIKVAlDFV-SPEnV 866 (956)
.+.|. .||.++||+|.||=+.|. .+.+.++.=++ +|++.
T Consensus 81 ~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~ 126 (144)
T PF00190_consen 81 DFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ 126 (144)
T ss_dssp EEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE
T ss_pred eeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc
Confidence 45555 999999999999999999 56666655444 44443
No 45
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=59.82 E-value=4.7 Score=47.68 Aligned_cols=41 Identities=12% Similarity=0.089 Sum_probs=29.1
Q ss_pred ccceEEEeecCceEEecCCCccccccccccceeeccccCCC
Q 002177 824 VEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPE 864 (956)
Q Consensus 824 VEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPE 864 (956)
|..=++.=..||.|+||+|.||+.+|.-+--=+.+--.+|+
T Consensus 412 ~dg~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~~ 452 (468)
T TIGR01479 412 IGDETLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSGS 452 (468)
T ss_pred ECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence 44556677899999999999999999876433333333444
No 46
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=59.52 E-value=8.9 Score=40.94 Aligned_cols=51 Identities=27% Similarity=0.670 Sum_probs=32.7
Q ss_pred CCCCcccccccCCCCeEEcCcCCCccccHhHHhhhcC--CCch--------hhhhhcCCCCCCc
Q 002177 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYS--DIPL--------EELEKVCPACRGS 245 (956)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~--e~~~--------edv~~~CP~Crg~ 245 (956)
+...|.=|...-...++ +.|+ -.||..||..|-. ..+. ..-...||.||.-
T Consensus 17 ~~~~CpICld~~~dPVv--T~CG-H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 17 GDFDCNICLDQVRDPVV--TLCG-HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred CccCCccCCCcCCCcEE--cCCC-chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 34567777665554444 5799 4899999999842 1111 1124689999973
No 47
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=58.93 E-value=4.9 Score=44.81 Aligned_cols=33 Identities=30% Similarity=0.692 Sum_probs=28.0
Q ss_pred ccccCCCcc-ccccccccCCCCC-cchhhhhhHHh
Q 002177 319 QMCCNICRI-PIIDYHRHCGNCM-YDLCLSCCQDL 351 (956)
Q Consensus 319 RvyCDnCkT-SIvD~HRSCp~Cs-YDLCLsCC~EL 351 (956)
-+-||+|.+ .|+-.-=.|.-|. ||||-.|-..-
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 377999999 9999888888774 99999997653
No 48
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=57.16 E-value=5.3 Score=29.34 Aligned_cols=25 Identities=32% Similarity=0.596 Sum_probs=22.0
Q ss_pred ccccCCCccccccccccCCCCCcch
Q 002177 319 QMCCNICRIPIIDYHRHCGNCMYDL 343 (956)
Q Consensus 319 RvyCDnCkTSIvD~HRSCp~CsYDL 343 (956)
.++|.+|.+.|-+=.|-||+|...|
T Consensus 2 ~~~Cp~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 2 EMFCPNCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred cCCCcccCCcCCcccccChhhCCCC
Confidence 3789999999999999999998765
No 49
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=55.97 E-value=7.8 Score=32.30 Aligned_cols=31 Identities=29% Similarity=0.608 Sum_probs=26.2
Q ss_pred cccCCCc-cccccccccCCCC-CcchhhhhhHH
Q 002177 320 MCCNICR-IPIIDYHRHCGNC-MYDLCLSCCQD 350 (956)
Q Consensus 320 vyCDnCk-TSIvD~HRSCp~C-sYDLCLsCC~E 350 (956)
+-||.|. +||+-.-=.|..| .||||-.|-.+
T Consensus 1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~ 33 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSR 33 (43)
T ss_pred CCCCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence 4699999 5999998889876 69999999774
No 50
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.05 E-value=20 Score=38.05 Aligned_cols=47 Identities=30% Similarity=0.679 Sum_probs=35.4
Q ss_pred cCCCCcccccccCCCCeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCCC
Q 002177 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (956)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (956)
..-..|--|.-.....+..=++|| -.||..||++-- ...-+||.|+.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCG-HvFC~~Cik~al------k~~~~CP~C~k 175 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCG-HVFCSQCIKDAL------KNTNKCPTCRK 175 (187)
T ss_pred ccccCCCceecchhhccccccccc-hhHHHHHHHHHH------HhCCCCCCccc
Confidence 355789999877776665668899 599999997543 23468999985
No 51
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=53.74 E-value=6.9 Score=31.71 Aligned_cols=28 Identities=25% Similarity=0.850 Sum_probs=19.0
Q ss_pred cCCCccccHhHHhhhcCCCchhhhhhcCCCC
Q 002177 212 KCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (956)
Q Consensus 212 ~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (956)
.|+ -.||..||.++..+.. ...+.||.|
T Consensus 15 ~CG-H~FC~~Cl~~~~~~~~--~~~~~CP~C 42 (42)
T PF15227_consen 15 PCG-HSFCRSCLERLWKEPS--GSGFSCPEC 42 (42)
T ss_dssp SSS-SEEEHHHHHHHHCCSS--SST---SSS
T ss_pred CCc-CHHHHHHHHHHHHccC--CcCCCCcCC
Confidence 588 5899999999987642 223889987
No 52
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=53.20 E-value=6.7 Score=28.32 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.4
Q ss_pred ccCCCccccccccccCCCCCcch
Q 002177 321 CCNICRIPIIDYHRHCGNCMYDL 343 (956)
Q Consensus 321 yCDnCkTSIvD~HRSCp~CsYDL 343 (956)
||-+|...|-|=.+-|++|...|
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCcC
Confidence 79999999999999999998765
No 53
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.85 E-value=9.9 Score=44.55 Aligned_cols=47 Identities=28% Similarity=0.633 Sum_probs=35.1
Q ss_pred CCCCcccccccCCCCeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCCCccc
Q 002177 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGSCN 247 (956)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~CN 247 (956)
....|.-|...-...+ -+.|+ -.||..||..+.... ..||.|+..+.
T Consensus 25 ~~l~C~IC~d~~~~Pv--itpCg-H~FCs~CI~~~l~~~------~~CP~Cr~~~~ 71 (397)
T TIGR00599 25 TSLRCHICKDFFDVPV--LTSCS-HTFCSLCIRRCLSNQ------PKCPLCRAEDQ 71 (397)
T ss_pred cccCCCcCchhhhCcc--CCCCC-CchhHHHHHHHHhCC------CCCCCCCCccc
Confidence 5678999986554433 25798 589999999987642 37999998754
No 54
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=52.36 E-value=9.2 Score=30.83 Aligned_cols=30 Identities=23% Similarity=0.631 Sum_probs=23.8
Q ss_pred cccccccCCCCeEEcCcCCCccccHhHHhhhcCC
Q 002177 196 CHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSD 229 (956)
Q Consensus 196 CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e 229 (956)
|+.|++++.-....|..|+ +.||. .-||++
T Consensus 1 C~~C~~~~~l~~f~C~~C~-~~FC~---~HR~~e 30 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCG-NLFCG---EHRLPE 30 (39)
T ss_pred CcccCCcccccCeECCccC-Ccccc---ccCCcc
Confidence 8999999976568899999 57875 566665
No 55
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=52.34 E-value=8.1 Score=46.18 Aligned_cols=45 Identities=11% Similarity=0.012 Sum_probs=29.6
Q ss_pred CccceEEEeecCceEEecCCCccccccccccceeeccccCCCCHH
Q 002177 823 GVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVG 867 (956)
Q Consensus 823 GVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 867 (956)
.|..=++.=..||.|+||+|.||+.+|.-.=-=+.+--.+|+-++
T Consensus 420 ~idg~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g~yl~ 464 (478)
T PRK15460 420 TIDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGSYLE 464 (478)
T ss_pred EECCEEEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCCCCC
Confidence 344445566899999999999999999864222222224554433
No 56
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=50.84 E-value=14 Score=29.85 Aligned_cols=42 Identities=26% Similarity=0.679 Sum_probs=28.0
Q ss_pred cccccccC-CCCeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCCC
Q 002177 196 CHQCRRND-RERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (956)
Q Consensus 196 CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (956)
|-.|.+.- .....+=++|+ -.||..||.+.. .....||+|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~Cg-H~~C~~C~~~~~------~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCG-HIFCEKCLKKLK------GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccC-CHHHHHHHHhhc------CCCCCCcCCCC
Confidence 45565555 22233445688 589999999887 44567999974
No 57
>PTZ00194 60S ribosomal protein L26; Provisional
Probab=50.11 E-value=7.2 Score=39.87 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=38.5
Q ss_pred CCCCcCCceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCc
Q 002177 800 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCP 844 (956)
Q Consensus 800 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCP 844 (956)
.-|+|...-.+.+.+=+.|+++|||..|.| +-||-|.|=+|=.
T Consensus 18 ~Ap~h~r~k~msa~LSkeLr~k~~~Rs~~I--kkGD~V~Vi~Gk~ 60 (143)
T PTZ00194 18 TAPSHLRRKLMSAPLSKELRAKYNVRSMPV--RKDDEVMVVRGHH 60 (143)
T ss_pred cCcHHHHHHHhcCccCHHHHHHhCCcccee--ecCCEEEEecCCC
Confidence 348999999999999999999999999987 6799999988864
No 58
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=49.95 E-value=14 Score=41.57 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=31.0
Q ss_pred eEEEeecCceEEecCCCccccccccccceeeccccCCCCHH
Q 002177 827 WSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVG 867 (956)
Q Consensus 827 Wtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~ 867 (956)
..|+=.+||..+||.|++|++.....|+.+++-|..|-...
T Consensus 176 ~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~d 216 (319)
T PF08007_consen 176 EEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWAD 216 (319)
T ss_dssp EEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHH
T ss_pred EEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhh
Confidence 46777899999999999999999999999999998884433
No 59
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=49.87 E-value=13 Score=29.21 Aligned_cols=29 Identities=28% Similarity=0.898 Sum_probs=22.0
Q ss_pred eEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCC
Q 002177 207 VVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (956)
Q Consensus 207 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (956)
.+....|+ -.||..|+.++... ...||.|
T Consensus 11 ~~~~~~CG-H~fC~~C~~~~~~~------~~~CP~C 39 (39)
T PF13923_consen 11 PVVVTPCG-HSFCKECIEKYLEK------NPKCPVC 39 (39)
T ss_dssp EEEECTTS-EEEEHHHHHHHHHC------TSB-TTT
T ss_pred cCEECCCC-CchhHHHHHHHHHC------cCCCcCC
Confidence 55678899 47999999998654 2789987
No 60
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=48.54 E-value=14 Score=36.61 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=36.7
Q ss_pred CCCCcCCceecCHHH-HHHHHHHhCccceEEEeecCceEEecCCCcccccccc--ccceeec
Q 002177 800 THPLYGEVVYLNGDH-KRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ--STVQLGL 858 (956)
Q Consensus 800 ~hPIHDQ~fYLt~eh-k~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAl 858 (956)
.||-.++-+|+-.-. .-.+-++.|=+-+++.-..||+++||+|-+|+..|.- .++-++.
T Consensus 47 ~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~ 108 (146)
T smart00835 47 YHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAF 108 (146)
T ss_pred eCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEE
Confidence 355445666654421 1111122222557888999999999999999999974 3444443
No 62
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=48.03 E-value=10 Score=39.27 Aligned_cols=41 Identities=27% Similarity=0.415 Sum_probs=24.5
Q ss_pred CceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCcccccccc
Q 002177 806 EVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ 851 (956)
Q Consensus 806 Q~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 851 (956)
.+.||...+ ++|.-+|=.|.=..+.-..||.+++|||.|-.
T Consensus 75 GTl~l~~~~-----~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~ 115 (167)
T PF02041_consen 75 GTLYLASSH-----EKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTN 115 (167)
T ss_dssp EEEEE--SS-----SSS--S-EEEEE-TTEEEEE-TT--EEEE---
T ss_pred eEEEEeccc-----ccCCCCceEEEecCCCeEEeCCCCcceeecCC
Confidence 456777443 37999999999999999999999999999965
No 63
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=46.30 E-value=9.3 Score=29.80 Aligned_cols=29 Identities=24% Similarity=0.920 Sum_probs=21.8
Q ss_pred EcCcCCCccccHhHHhhhcCCCchhhhhhcCCCC
Q 002177 209 WCVKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (956)
Q Consensus 209 ~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (956)
.=..|+ -.||..||.+++.. .....||.|
T Consensus 13 ~~~~C~-H~fC~~C~~~~~~~----~~~~~CP~C 41 (41)
T PF00097_consen 13 ILLPCG-HSFCRDCLRKWLEN----SGSVKCPLC 41 (41)
T ss_dssp EETTTS-EEEEHHHHHHHHHH----TSSSBTTTT
T ss_pred EEecCC-CcchHHHHHHHHHh----cCCccCCcC
Confidence 345688 47999999999873 344569987
No 64
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=43.89 E-value=16 Score=40.16 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=32.6
Q ss_pred CCCcCCceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccc
Q 002177 801 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (956)
Q Consensus 801 hPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (956)
|+-.++-+|+-.--- +.-+..-+++=..||+++||||.||..+|...
T Consensus 77 ~~g~ee~iyVl~G~l-----~v~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~ 123 (260)
T TIGR03214 77 GEGIETFLFVISGEV-----NVTAEGETHELREGGYAYLPPGSKWTLANAQA 123 (260)
T ss_pred CCceEEEEEEEeCEE-----EEEECCEEEEECCCCEEEECCCCCEEEEECCC
Confidence 344455666654421 12345667778889999999999999999873
No 65
>KOG2508 consensus Predicted phospholipase [Lipid transport and metabolism]
Probab=42.86 E-value=38 Score=39.49 Aligned_cols=38 Identities=16% Similarity=0.429 Sum_probs=29.2
Q ss_pred HHHHHhhh-cCCCEEEeccccCCCCC-CCChh-hhhhhhhh
Q 002177 489 GNFRKHWV-KGEPVIVKQVCDSSSMS-IWDPK-DIWRGIRE 526 (956)
Q Consensus 489 ~hFQ~hW~-kGePVIVr~Vl~~~s~l-sW~P~-~mwr~~~e 526 (956)
.+|=+-|. +..|||+|+.+..-.++ .|.+. ++..+++.
T Consensus 34 l~Fyr~fvs~n~PvIIrkAL~hWpal~lWs~p~Yl~~algd 74 (437)
T KOG2508|consen 34 LDFYRKFVSTNTPVIIRKALPHWPALKLWSQPDYLLSALGD 74 (437)
T ss_pred HHHHHhhhcCCCcEEEecccccCchhhccCchHHHHHhccC
Confidence 56777776 88999999999876666 88877 77666543
No 66
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=42.20 E-value=21 Score=41.30 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=48.2
Q ss_pred CCCCcCCceecCHH-HHHHHHHHhCccceEEEeecCceEEecCCCccccccccccceeeccccCCCCHHHHHHHHHHHhc
Q 002177 800 THPLYGEVVYLNGD-HKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEAVRLAEEIRC 878 (956)
Q Consensus 800 ~hPIHDQ~fYLt~e-hk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC~rLteEfR~ 878 (956)
.||--+..+|+-.- -+..+-..-| ...++.=..||++|||+|.+|.++|.-+--=+-+-+.+....+.- .|++=+..
T Consensus 262 ~H~~~~E~~yvl~G~~~~~v~d~~g-~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i-~l~~~l~~ 339 (367)
T TIGR03404 262 WHPNADEWQYFIQGQARMTVFAAGG-NARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADV-SLNQWLAL 339 (367)
T ss_pred eCcCCCeEEEEEEEEEEEEEEecCC-cEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCcee-EHHHHHhh
Confidence 46655565555443 2111111111 356677789999999999999999998654444444443333332 36777777
Q ss_pred CCc
Q 002177 879 LPN 881 (956)
Q Consensus 879 Lp~ 881 (956)
+|.
T Consensus 340 ~p~ 342 (367)
T TIGR03404 340 TPP 342 (367)
T ss_pred CCH
Confidence 876
No 67
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.16 E-value=29 Score=35.78 Aligned_cols=44 Identities=25% Similarity=0.659 Sum_probs=34.0
Q ss_pred cCCCCcccccccCCCCeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCC
Q 002177 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (956)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (956)
.....|.-|...=... ....|+ -.||..||...-. ....||.||
T Consensus 11 ~~~~~C~iC~~~~~~p--~~l~C~-H~~c~~C~~~~~~------~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP--VLLPCG-HNFCRACLTRSWE------GPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC--cccccc-chHhHHHHHHhcC------CCcCCcccC
Confidence 3667888888776655 444577 5899999988776 558999999
No 68
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=42.06 E-value=10 Score=44.71 Aligned_cols=32 Identities=31% Similarity=0.906 Sum_probs=28.4
Q ss_pred cccccCCCcccccccc-ccCCCCC-cchhhhhhH
Q 002177 318 EQMCCNICRIPIIDYH-RHCGNCM-YDLCLSCCQ 349 (956)
Q Consensus 318 ERvyCDnCkTSIvD~H-RSCp~Cs-YDLCLsCC~ 349 (956)
+...||+|..-|-+.- -.|-.|. |||||-|..
T Consensus 13 ~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs 46 (438)
T KOG0457|consen 13 GKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFS 46 (438)
T ss_pred CCCCCccHhHHhccceEEEeecCCCcchhHHHHh
Confidence 4567999999999875 7999999 999999986
No 69
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=41.15 E-value=3.9 Score=33.42 Aligned_cols=48 Identities=23% Similarity=0.627 Sum_probs=29.8
Q ss_pred CcccccccC-CCCeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCC
Q 002177 195 ICHQCRRND-RERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (956)
Q Consensus 195 ~CHQCrqkt-~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (956)
+|+-|++.. .+.++.|..|++ .|=..|+.............|.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~-~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNR-WYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSC-EEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCCh-hhCcccCCCChhhccCCCCcEECcCCc
Confidence 477888855 557999999994 444555543322111112279999885
No 70
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=40.28 E-value=8.9 Score=47.67 Aligned_cols=45 Identities=27% Similarity=0.749 Sum_probs=32.2
Q ss_pred cCCCCcccccccCCCCeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCC
Q 002177 191 TGGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (956)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (956)
.+..+|--|...-.+.+ =++|+ -.||..|++.||.. -.-+||.|-
T Consensus 641 K~~LkCs~Cn~R~Kd~v--I~kC~-H~FC~~Cvq~r~et-----RqRKCP~Cn 685 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAV--ITKCG-HVFCEECVQTRYET-----RQRKCPKCN 685 (698)
T ss_pred HhceeCCCccCchhhHH--HHhcc-hHHHHHHHHHHHHH-----hcCCCCCCC
Confidence 36778999983334333 34788 58999999999974 346899863
No 71
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=39.86 E-value=10 Score=43.77 Aligned_cols=16 Identities=50% Similarity=0.910 Sum_probs=13.0
Q ss_pred eecCceEEecCCCccc
Q 002177 831 QHLGEAVFIPAGCPFQ 846 (956)
Q Consensus 831 Q~lGEAVFIPAGCPHQ 846 (956)
=.+|||+|+|||-||-
T Consensus 254 L~pGeaifl~a~~~HA 269 (373)
T PF01238_consen 254 LQPGEAIFLPAGEPHA 269 (373)
T ss_dssp E-TT-EEEEHTTHHEE
T ss_pred ecCCceEEecCCCccc
Confidence 3589999999999997
No 72
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.82 E-value=12 Score=42.20 Aligned_cols=44 Identities=25% Similarity=0.687 Sum_probs=30.9
Q ss_pred eEEcCcCC-CccccHhHHhhhcCCCchhhh--------hhcCCCCCCccccccccccC
Q 002177 207 VVWCVKCD-KRGYCDSCISTWYSDIPLEEL--------EKVCPACRGSCNCKACLRAD 255 (956)
Q Consensus 207 ~v~C~~C~-r~~FC~~CL~~rY~e~~~edv--------~~~CP~Crg~CNCs~Clr~~ 255 (956)
-..|.+|= |-..|..||.+||-.- .+++ +-.||.||. ++|.+.-
T Consensus 317 ga~c~nc~crp~wc~~cla~~f~~r-q~~v~r~~~~~~~~~cp~cr~----~fci~dv 369 (381)
T KOG3899|consen 317 GAPCENCICRPLWCRSCLAQIFIGR-QDNVYRYEYHRGSAQCPTCRK----NFCIRDV 369 (381)
T ss_pred CCcccccccccHHHHHHHHHHHhhc-ccchhHHHHHhcCCCCcchhh----ceEEeee
Confidence 35688865 5689999999998763 2322 468999987 4665544
No 73
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=38.45 E-value=11 Score=35.20 Aligned_cols=71 Identities=20% Similarity=0.338 Sum_probs=45.7
Q ss_pred eccCCChhHHHHHHHHH-HHHhCCCCCCCCCccCCCCcCCceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCccc
Q 002177 768 VFRRQDVPKLIEYLREH-WTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQ 846 (956)
Q Consensus 768 IFrreDv~KLreyL~kh-~~Ef~~~~~~~~~~v~hPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQ 846 (956)
-|.|...++|.+|.++. .+-+....-.. ..+..||-. ||+++.+++|.+.+|.++ ||+||+=||-.+.
T Consensus 22 ~~srk~id~l~~~ak~~ga~gL~~ikv~~-~~~~s~i~k---fl~e~~~~~l~~~~~a~~-------GD~ll~~Ag~~~~ 90 (95)
T PF02938_consen 22 KLSRKQIDKLEEFAKKFGAKGLAWIKVEE-GELKSPIAK---FLSEEELKALIERLGAKP-------GDLLLFVAGKKEI 90 (95)
T ss_dssp TTTHCCCCCCCCHHHHCCHCHCCCEEEST-CEEECTTCC---CCHHHHHHHHHHHTT--T-------TEEEEEEEESHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCceeeeEcC-CcccCcccc---cCCHHHHHHHHHHhCCCC-------CCEEEEECCCHHH
Confidence 35667777777777532 11111110001 235566643 599999999999999975 9999999999888
Q ss_pred ccc
Q 002177 847 VRN 849 (956)
Q Consensus 847 VRN 849 (956)
|++
T Consensus 91 v~~ 93 (95)
T PF02938_consen 91 VNK 93 (95)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 74
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=38.43 E-value=8.9 Score=43.62 Aligned_cols=30 Identities=33% Similarity=0.992 Sum_probs=26.4
Q ss_pred cccCCCccccccc-cccCCCC-CcchhhhhhH
Q 002177 320 MCCNICRIPIIDY-HRHCGNC-MYDLCLSCCQ 349 (956)
Q Consensus 320 vyCDnCkTSIvD~-HRSCp~C-sYDLCLsCC~ 349 (956)
..||.|..-|.|. |-+|-.| -||||+-|.-
T Consensus 6 ~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~ 37 (432)
T COG5114 6 IHCDVCFLDMTDLTFIKCNECPAVDLCLPCFV 37 (432)
T ss_pred eeehHHHHhhhcceeeeeecccccceehhhhh
Confidence 5699999999986 5689999 9999999975
No 75
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=37.94 E-value=14 Score=36.80 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=35.8
Q ss_pred CCCcCCceecCHHHHHHHHHHhCccceEEEeecCceEEecCCC
Q 002177 801 HPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGC 843 (956)
Q Consensus 801 hPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGC 843 (956)
-|.|...-.+...+=+.|+++|||..|.| +.||-|.|=||-
T Consensus 18 a~~~~r~k~msa~LSkeLr~~y~ir~~~I--kkGD~V~VisG~ 58 (120)
T PRK01191 18 APLHLRQKLMSAPLSKELREKYGIRSLPV--RKGDTVKVMRGD 58 (120)
T ss_pred CCHHHHHHHhcCccCHHHHHHhCCccceE--eCCCEEEEeecC
Confidence 47788888888888899999999999977 589999999985
No 76
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=37.11 E-value=29 Score=32.77 Aligned_cols=48 Identities=27% Similarity=0.718 Sum_probs=35.5
Q ss_pred CCCCcccccccCCC-CeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCCC
Q 002177 192 GGQICHQCRRNDRE-RVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (956)
Q Consensus 192 ~~~~CHQCrqkt~~-~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (956)
-...|..|+-...+ .++.++ |+ -.|=..||.+|-... ..+-.||.||.
T Consensus 31 fdg~Cp~Ck~Pgd~Cplv~g~-C~-H~FH~hCI~kWl~~~---~~~~~CPmCR~ 79 (85)
T PF12861_consen 31 FDGCCPDCKFPGDDCPLVWGK-CS-HNFHMHCILKWLSTQ---SSKGQCPMCRQ 79 (85)
T ss_pred cccCCCCccCCCCCCceeecc-Cc-cHHHHHHHHHHHccc---cCCCCCCCcCC
Confidence 44568888876644 566665 88 489999999998742 34679999996
No 77
>PRK04023 DNA polymerase II large subunit; Validated
Probab=34.56 E-value=21 Score=46.09 Aligned_cols=30 Identities=23% Similarity=0.596 Sum_probs=23.5
Q ss_pred cCCCCcccccccCCCCeEEcCcCCC----ccccHhH
Q 002177 191 TGGQICHQCRRNDRERVVWCVKCDK----RGYCDSC 222 (956)
Q Consensus 191 ~~~~~CHQCrqkt~~~~v~C~~C~r----~~FC~~C 222 (956)
.+...|..|.+.+. ...|.+|+. ..||..|
T Consensus 624 Vg~RfCpsCG~~t~--~frCP~CG~~Te~i~fCP~C 657 (1121)
T PRK04023 624 IGRRKCPSCGKETF--YRRCPFCGTHTEPVYRCPRC 657 (1121)
T ss_pred ccCccCCCCCCcCC--cccCCCCCCCCCcceeCccc
Confidence 58889999999874 578999994 3566666
No 78
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=34.52 E-value=24 Score=26.36 Aligned_cols=23 Identities=26% Similarity=0.772 Sum_probs=20.3
Q ss_pred ccCCCccccccccccCCCCCcch
Q 002177 321 CCNICRIPIIDYHRHCGNCMYDL 343 (956)
Q Consensus 321 yCDnCkTSIvD~HRSCp~CsYDL 343 (956)
.|..|..-|-.--+.||.|.|+.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48889999999999999999974
No 79
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.48 E-value=25 Score=38.57 Aligned_cols=47 Identities=28% Similarity=0.680 Sum_probs=34.3
Q ss_pred CCCCcccccccCCCCeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCCC
Q 002177 192 GGQICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (956)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (956)
+.--|-=|--.-.+.++. -|+ -.||-+||.+|-.- -.....||+|.+
T Consensus 46 ~~FdCNICLd~akdPVvT--lCG-HLFCWpClyqWl~~---~~~~~~cPVCK~ 92 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVT--LCG-HLFCWPCLYQWLQT---RPNSKECPVCKA 92 (230)
T ss_pred CceeeeeeccccCCCEEe--ecc-cceehHHHHHHHhh---cCCCeeCCcccc
Confidence 456788888777777776 478 58999999999531 233456899976
No 80
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=33.10 E-value=19 Score=41.67 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=33.6
Q ss_pred eccCCChhHHHHHHHHHHHHhCCCC--CCCCC-ccCCCCcCCceecCHHHHHHHHHHhCccceEEEe-ecCceEEecCCC
Q 002177 768 VFRRQDVPKLIEYLREHWTDFGRPD--GVTND-FVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQ-HLGEAVFIPAGC 843 (956)
Q Consensus 768 IFrreDv~KLreyL~kh~~Ef~~~~--~~~~~-~v~hPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q-~lGEAVFIPAGC 843 (956)
=||-+-.++|+..|+|-|-.+|... -++++ +.+| -.| |=-...-||.---|=-| -.-||||||||-
T Consensus 243 eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNid-----lly-----KYivhr~yG~~fttpAlVVEkdaVfIPAGW 312 (473)
T KOG3905|consen 243 EYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNID-----LLY-----KYIVHRSYGFPFTTPALVVEKDAVFIPAGW 312 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchH-----HHH-----HHHHHHhcCcccCCcceEeecceeEeccCC
Confidence 3666677777777777666655331 11111 1111 011 11112236653333223 246999999996
Q ss_pred c
Q 002177 844 P 844 (956)
Q Consensus 844 P 844 (956)
-
T Consensus 313 D 313 (473)
T KOG3905|consen 313 D 313 (473)
T ss_pred C
Confidence 3
No 81
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=32.91 E-value=23 Score=40.14 Aligned_cols=43 Identities=28% Similarity=0.760 Sum_probs=30.8
Q ss_pred CCCCcccccccCCCCeEEcC-cCCCccccHhHHhhhcCCCchhhhhhcCCCCCC
Q 002177 192 GGQICHQCRRNDRERVVWCV-KCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (956)
Q Consensus 192 ~~~~CHQCrqkt~~~~v~C~-~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (956)
....||-|.-- ..+.|- .|+ --||.-||+.+.++.. .||+||-
T Consensus 24 s~lrC~IC~~~---i~ip~~TtCg-HtFCslCIR~hL~~qp------~CP~Cr~ 67 (391)
T COG5432 24 SMLRCRICDCR---ISIPCETTCG-HTFCSLCIRRHLGTQP------FCPVCRE 67 (391)
T ss_pred hHHHhhhhhhe---eecceecccc-cchhHHHHHHHhcCCC------CCccccc
Confidence 44578887532 245564 588 4899999999988754 4999985
No 82
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=32.89 E-value=31 Score=38.35 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=28.2
Q ss_pred HhCccceEEEeecCceEEecCCCccccccccccc
Q 002177 821 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTV 854 (956)
Q Consensus 821 EyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCI 854 (956)
.|-|.+-++.-..||+||||+|.||+......|-
T Consensus 58 ~~~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~ 91 (302)
T PRK10371 58 EYLINNEKVQINQGHITLFWACTPHQLTDPGNCR 91 (302)
T ss_pred EEEECCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence 3667788899999999999999999987666554
No 83
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.74 E-value=41 Score=38.43 Aligned_cols=43 Identities=26% Similarity=0.691 Sum_probs=29.7
Q ss_pred CCcccccccC---CC--CeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCCC
Q 002177 194 QICHQCRRND---RE--RVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (956)
Q Consensus 194 ~~CHQCrqkt---~~--~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (956)
.+|--|+... .. .++. .|+ -.||..||.+-+..- ...||.|+.
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~--~CG-H~~C~sCv~~l~~~~-----~~~CP~C~~ 51 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVN--VCG-HTLCESCVDLLFVRG-----SGSCPECDT 51 (309)
T ss_pred CCCCcCCCCCccCcccccccC--CCC-CcccHHHHHHHhcCC-----CCCCCCCCC
Confidence 5799998854 22 1333 688 589999999976432 237998864
No 84
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=32.59 E-value=31 Score=36.50 Aligned_cols=62 Identities=23% Similarity=0.315 Sum_probs=46.0
Q ss_pred CCcee-cCHHHHHHHHHHhCccceEEEeecCceEEecCCCccccccccccceeeccccCCCCHHH
Q 002177 805 GEVVY-LNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGE 868 (956)
Q Consensus 805 DQ~fY-Lt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~e 868 (956)
|..|| |.-++.-++.+ +=+..++.=+.||..+||+|.||..+.-..||-+.+.=..|+..-.
T Consensus 55 dE~FyqleG~~~l~v~d--~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~LviE~~r~~~~~d 117 (177)
T PRK13264 55 EEFFYQLEGDMYLKVQE--DGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVIERKRPEGELD 117 (177)
T ss_pred ceEEEEECCeEEEEEEc--CCceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEEEeCCCCCCcc
Confidence 55566 44443333332 2234688889999999999999999889999999998888887655
No 85
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=32.52 E-value=35 Score=30.66 Aligned_cols=26 Identities=35% Similarity=0.848 Sum_probs=20.0
Q ss_pred CcCCCccccHhHHhhhcCCCchhhhhhcCCCCC
Q 002177 211 VKCDKRGYCDSCISTWYSDIPLEELEKVCPACR 243 (956)
Q Consensus 211 ~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Cr 243 (956)
..|+ -.|-..||.+|..... .||.||
T Consensus 48 ~~C~-H~FH~~Ci~~Wl~~~~------~CP~CR 73 (73)
T PF12678_consen 48 GPCG-HIFHFHCISQWLKQNN------TCPLCR 73 (73)
T ss_dssp ETTS-EEEEHHHHHHHHTTSS------B-TTSS
T ss_pred cccC-CCEEHHHHHHHHhcCC------cCCCCC
Confidence 3577 5899999999986532 899997
No 86
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=32.25 E-value=19 Score=41.50 Aligned_cols=34 Identities=35% Similarity=0.935 Sum_probs=27.4
Q ss_pred cccccccCCCccccccccc-cCCCCC-cchhhhhhH
Q 002177 316 ADEQMCCNICRIPIIDYHR-HCGNCM-YDLCLSCCQ 349 (956)
Q Consensus 316 ~DERvyCDnCkTSIvD~HR-SCp~Cs-YDLCLsCC~ 349 (956)
--|+|-||.|.---|-|.| -|-.|+ ||||-+|--
T Consensus 5 rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCye 40 (381)
T KOG1280|consen 5 RHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYE 40 (381)
T ss_pred CcCCceeccccccceeeeeeEeeeecchhHHHHHhh
Confidence 3588999999776666666 488886 999999975
No 87
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=31.14 E-value=33 Score=35.71 Aligned_cols=45 Identities=11% Similarity=0.190 Sum_probs=39.8
Q ss_pred cceEEEeecCceEEecCCCccccccccccceeeccccCCCCHHHH
Q 002177 825 EPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGLDFLFPESVGEA 869 (956)
Q Consensus 825 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAlDFVSPEnV~eC 869 (956)
+..++.=..||..+||+|.||..+--..||=+.+.=..|++...+
T Consensus 68 ~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvIE~~r~~~~~d~ 112 (159)
T TIGR03037 68 KREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVIERKRPQGELDG 112 (159)
T ss_pred cEEEEEECCCCEEEeCCCCCcccccCCCcEEEEEEeCCCCCCCcc
Confidence 356788899999999999999998899999999999999987663
No 88
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=30.94 E-value=32 Score=36.24 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHhCCCCCCCCCccCCCCcCCceecCHHHHHHHHHHhCccceEEEe-ecCceEEecCCCccc
Q 002177 775 PKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQ-HLGEAVFIPAGCPFQ 846 (956)
Q Consensus 775 ~KLreyL~kh~~Ef~~~~~~~~~~v~hPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q-~lGEAVFIPAGCPHQ 846 (956)
+||..|...|. |... .+-=|-+++-|.|.+.+. +-|-=.+ .-||-|+||||.=|-
T Consensus 80 eKvk~FfEEhl----h~de-----eiR~il~GtgYfDVrd~d--------d~WIRi~vekGDlivlPaGiyHR 135 (179)
T KOG2107|consen 80 EKVKSFFEEHL----HEDE-----EIRYILEGTGYFDVRDKD--------DQWIRIFVEKGDLIVLPAGIYHR 135 (179)
T ss_pred HHHHHHHHHhc----Cchh-----heEEEeecceEEeeccCC--------CCEEEEEEecCCEEEecCcceee
Confidence 57777776554 3322 334566888999888754 5776554 469999999999886
No 89
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=30.64 E-value=24 Score=30.48 Aligned_cols=30 Identities=30% Similarity=0.615 Sum_probs=19.3
Q ss_pred eEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCCCc
Q 002177 207 VVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (956)
Q Consensus 207 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~ 245 (956)
.++|.+|++. ..+.++ ...++.+||.|+.+
T Consensus 4 eiRC~~Cnkl-------La~~g~--~~~leIKCpRC~ti 33 (51)
T PF10122_consen 4 EIRCGHCNKL-------LAKAGE--VIELEIKCPRCKTI 33 (51)
T ss_pred ceeccchhHH-------HhhhcC--ccEEEEECCCCCcc
Confidence 5789888862 222332 23568899999853
No 90
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=29.42 E-value=57 Score=37.91 Aligned_cols=53 Identities=15% Similarity=0.313 Sum_probs=35.8
Q ss_pred cceEEEeecCceEEecCCCccccccccccceeec-----cccCCCCHHHHHHHHHHHhcCCc
Q 002177 825 EPWSFEQHLGEAVFIPAGCPFQVRNLQSTVQLGL-----DFLFPESVGEAVRLAEEIRCLPN 881 (956)
Q Consensus 825 EpWtf~Q~lGEAVFIPAGCPHQVRNLkSCIKVAl-----DFVSPEnV~eC~rLteEfR~Lp~ 881 (956)
+-+++.=..||.++||+|.+|-.+|+..=..+.+ .|-|+..+ .++.=|+.+|.
T Consensus 108 ~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~vf~~~~f~~~~~~----~~~~~l~~~p~ 165 (367)
T TIGR03404 108 RNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLLVFDDGNFSEDGTF----LVTDWLAHTPK 165 (367)
T ss_pred cEEEeEECCCCEEEECCCCeEEEEECCCCeEEEEEeCCcccCCccee----eHHHHHHhCCH
Confidence 3555567899999999999999999964333333 35556532 23455666776
No 91
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=29.10 E-value=39 Score=39.33 Aligned_cols=54 Identities=20% Similarity=0.625 Sum_probs=36.0
Q ss_pred cCCCCcccccccCCCCe------------------EEcCcCC-CccccHhHHhhhcCCCchhhh--------hhcCCCCC
Q 002177 191 TGGQICHQCRRNDRERV------------------VWCVKCD-KRGYCDSCISTWYSDIPLEEL--------EKVCPACR 243 (956)
Q Consensus 191 ~~~~~CHQCrqkt~~~~------------------v~C~~C~-r~~FC~~CL~~rY~e~~~edv--------~~~CP~Cr 243 (956)
.....|--|.+...+-+ ..|+.|- |-+.|..|+.+||--- ++.. +-.||.||
T Consensus 269 ~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasr-Qd~~~~~~Wl~~~~~CPtCR 347 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASR-QDQQHPETWLSGKCPCPTCR 347 (358)
T ss_pred cccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhc-CCCCChhhhhcCCCCCCCCc
Confidence 35667777777665422 2566665 5789999999999742 2221 35899999
Q ss_pred Cc
Q 002177 244 GS 245 (956)
Q Consensus 244 g~ 245 (956)
..
T Consensus 348 a~ 349 (358)
T PF10272_consen 348 AK 349 (358)
T ss_pred cc
Confidence 74
No 92
>PF13216 DUF4024: Protein of unknown function (DUF4024)
Probab=28.70 E-value=28 Score=27.23 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=18.5
Q ss_pred CCCcceeeeeccccceeeeec
Q 002177 646 GNSVKNLHFNMPDMVYLLVHM 666 (956)
Q Consensus 646 GdSvTkLH~DmSDAVNIL~ht 666 (956)
|.|||+||+=--.-||+|.-+
T Consensus 3 glsvt~lhlfrde~vnflfci 23 (35)
T PF13216_consen 3 GLSVTNLHLFRDEKVNFLFCI 23 (35)
T ss_pred ceEEEEEEEeecCCccEEEEe
Confidence 689999999888899999765
No 93
>PF09567 RE_MamI: MamI restriction endonuclease; InterPro: IPR019067 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MamI restriction endonuclease which recognises and cleaves GATNN^NNATC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=28.69 E-value=25 Score=39.15 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.1
Q ss_pred cccCCCccccccccccCCCCCc
Q 002177 320 MCCNICRIPIIDYHRHCGNCMY 341 (956)
Q Consensus 320 vyCDnCkTSIvD~HRSCp~CsY 341 (956)
--|+||.+-+.-|.-+||+|+.
T Consensus 83 ~~C~~CGa~V~~~e~~Cp~C~S 104 (314)
T PF09567_consen 83 GKCNNCGANVSRLEESCPNCGS 104 (314)
T ss_pred hhhccccceeeehhhcCCCCCc
Confidence 4599999999999999999975
No 94
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=28.58 E-value=24 Score=32.04 Aligned_cols=13 Identities=46% Similarity=1.661 Sum_probs=9.9
Q ss_pred cccHhHHhhhcCC
Q 002177 217 GYCDSCISTWYSD 229 (956)
Q Consensus 217 ~FC~~CL~~rY~e 229 (956)
.||..||.+||.+
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999986
No 95
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=28.26 E-value=55 Score=27.50 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=29.0
Q ss_pred CcccccccCCCCeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCCCc
Q 002177 195 ICHQCRRNDRERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRGS 245 (956)
Q Consensus 195 ~CHQCrqkt~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg~ 245 (956)
.|-=|+.--.+.++ ..|+ ..||..||..|..+ ...||.|+..
T Consensus 3 ~Cpi~~~~~~~Pv~--~~~G-~v~~~~~i~~~~~~------~~~cP~~~~~ 44 (63)
T smart00504 3 LCPISLEVMKDPVI--LPSG-QTYERRAIEKWLLS------HGTDPVTGQP 44 (63)
T ss_pred CCcCCCCcCCCCEE--CCCC-CEEeHHHHHHHHHH------CCCCCCCcCC
Confidence 45556555444443 4677 58999999998854 4589998763
No 96
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=27.97 E-value=38 Score=34.56 Aligned_cols=44 Identities=25% Similarity=0.557 Sum_probs=35.8
Q ss_pred ccCcccccc-cCCCccccccccccCCC--CCcchhhhhhHHhhhccc
Q 002177 313 KLSADEQMC-CNICRIPIIDYHRHCGN--CMYDLCLSCCQDLREAST 356 (956)
Q Consensus 313 ~~~~DERvy-CDnCkTSIvD~HRSCp~--CsYDLCLsCC~ELR~g~l 356 (956)
.+..|..+| ||.|+-.=.|=|=-=|+ |.|.+|-.||-.|=+-..
T Consensus 73 nvF~d~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~ 119 (140)
T PF05290_consen 73 NVFLDPKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN 119 (140)
T ss_pred eeecCCCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc
Confidence 334444888 99999998887776676 999999999999987764
No 97
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=27.96 E-value=37 Score=40.03 Aligned_cols=44 Identities=39% Similarity=0.603 Sum_probs=38.3
Q ss_pred cccccccccCCCCCccccCC--CcccCchhHHHH-HHhhhcCCCEEEe
Q 002177 460 SLCQYAHREDRDGNFLYCPS--SHDIRSEGIGNF-RKHWVKGEPVIVK 504 (956)
Q Consensus 460 ~l~kaA~Re~s~dN~lY~P~--~~di~~~~l~hF-Q~hW~kGePVIVr 504 (956)
+|-+||.|. +-.|=||||. +..+...+|.+| ++|..+|.-|+|.
T Consensus 160 ~lH~aAfRn-gLgnslY~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg 206 (429)
T KOG2583|consen 160 QLHAAAFRN-GLGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNAVLVG 206 (429)
T ss_pred HHHHHHHhc-ccCCcccCCcccccCccHHHHHHHHHHHhhccceEEEe
Confidence 578999998 7889999996 777888999999 6899999998884
No 98
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=27.68 E-value=32 Score=30.82 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=12.8
Q ss_pred EEEeecCceEEecCCCc
Q 002177 828 SFEQHLGEAVFIPAGCP 844 (956)
Q Consensus 828 tf~Q~lGEAVFIPAGCP 844 (956)
+..=..||+||||+|..
T Consensus 45 ~~~~~aGD~~~~p~G~~ 61 (74)
T PF05899_consen 45 TVTFKAGDAFFLPKGWT 61 (74)
T ss_dssp EEEEETTEEEEE-TTEE
T ss_pred EEEEcCCcEEEECCCCE
Confidence 35557999999999984
No 99
>PRK11171 hypothetical protein; Provisional
Probab=27.41 E-value=45 Score=36.83 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=23.5
Q ss_pred ccceEEEeecCceEEecCCCcccccccc
Q 002177 824 VEPWSFEQHLGEAVFIPAGCPFQVRNLQ 851 (956)
Q Consensus 824 VEpWtf~Q~lGEAVFIPAGCPHQVRNLk 851 (956)
|..=+++=..||.|+||+|.||+.+|.-
T Consensus 98 ~~g~~~~L~~GDsi~~p~~~~H~~~N~g 125 (266)
T PRK11171 98 LEGKTHALSEGGYAYLPPGSDWTLRNAG 125 (266)
T ss_pred ECCEEEEECCCCEEEECCCCCEEEEECC
Confidence 3444667778999999999999999976
No 100
>PRK11171 hypothetical protein; Provisional
Probab=26.95 E-value=37 Score=37.51 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=27.8
Q ss_pred HhCccceEEEeecCceEEecCCCccccccccc
Q 002177 821 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (956)
Q Consensus 821 EyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (956)
++.+..-++.=..||++++|+++||+.+|.-+
T Consensus 217 ~~~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~ 248 (266)
T PRK11171 217 VYRLNNDWVEVEAGDFIWMRAYCPQACYAGGP 248 (266)
T ss_pred EEEECCEEEEeCCCCEEEECCCCCEEEECCCC
Confidence 46677888888999999999999999999743
No 101
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=26.09 E-value=38 Score=28.20 Aligned_cols=34 Identities=26% Similarity=0.641 Sum_probs=25.8
Q ss_pred CCcccccccC--CCCeEEcCcCCCccccHhHHhhhcC
Q 002177 194 QICHQCRRND--RERVVWCVKCDKRGYCDSCISTWYS 228 (956)
Q Consensus 194 ~~CHQCrqkt--~~~~v~C~~C~r~~FC~~CL~~rY~ 228 (956)
..|+.|.++= ..+...|..|+ ..||..|...+-.
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg-~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCG-RIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCc-CCcChHHcCCeee
Confidence 4688888543 23577899999 4899999987744
No 102
>PF12852 Cupin_6: Cupin
Probab=25.79 E-value=39 Score=34.51 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=28.1
Q ss_pred cCCCCcCCceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCcccccccc
Q 002177 799 VTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ 851 (956)
Q Consensus 799 v~hPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk 851 (956)
..|=+-..++||...- +-+| +.=..||.||+|.|.||...--.
T Consensus 37 ~fh~V~~G~~~l~~~~--------~~~~--~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 37 SFHVVLRGSCWLRVPG--------GGEP--IRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred EEEEEECCeEEEEEcC--------CCCe--EEecCCCEEEEcCCCCeEeCCCC
Confidence 4555666777776221 1123 44467999999999999985433
No 103
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic. This model represents the archaeal and eukaryotic branch of the ribosomal protein L24p/L26e family. Bacterial and organellar forms are represented by the related TIGR01079.
Probab=25.76 E-value=37 Score=33.57 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=38.3
Q ss_pred CCCCcCCceecCHHHHHHHHHHhCccceEEEeecCceEEecCCCc
Q 002177 800 THPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGCP 844 (956)
Q Consensus 800 ~hPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGCP 844 (956)
.-|+|...-++...+=+.|.++||++.+.| +-||-|.|=+|-=
T Consensus 13 ~a~~~~r~~~~~a~ls~elr~~y~~r~~~I--kkGD~V~Vi~Gk~ 55 (114)
T TIGR01080 13 TAPLHVRRKLMSAPLSKELREKYGKRALPV--RKGDKVRIMRGDF 55 (114)
T ss_pred cCcHhhhhheeecccCHHHHHHcCccccee--ecCCEEEEecCCC
Confidence 348999999999999999999999999966 7899999999863
No 104
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=24.76 E-value=35 Score=43.07 Aligned_cols=33 Identities=27% Similarity=0.601 Sum_probs=27.2
Q ss_pred CCCcccccccCCC-------CeEEcCcCCCccccHhHHhhh
Q 002177 193 GQICHQCRRNDRE-------RVVWCVKCDKRGYCDSCISTW 226 (956)
Q Consensus 193 ~~~CHQCrqkt~~-------~~v~C~~C~r~~FC~~CL~~r 226 (956)
...|+.|+++-.. +.--|++|+ ..||..|-.++
T Consensus 460 SdtC~~C~kkFfSlsK~L~~RKHHCRkCG-rVFC~~CSSnR 499 (1374)
T PTZ00303 460 SDSCPSCGRAFISLSRPLGTRAHHCRSCG-IRLCVFCITKR 499 (1374)
T ss_pred CCcccCcCCcccccccccccccccccCCc-cccCccccCCc
Confidence 5789999988742 455699999 59999999887
No 105
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=24.75 E-value=59 Score=34.38 Aligned_cols=64 Identities=20% Similarity=0.585 Sum_probs=44.7
Q ss_pred Cccccccc----CCCCeEEcCcCCCccccHhHHhhhcCCC------chhhhhhcCCCCCCc-----------cccccccc
Q 002177 195 ICHQCRRN----DRERVVWCVKCDKRGYCDSCISTWYSDI------PLEELEKVCPACRGS-----------CNCKACLR 253 (956)
Q Consensus 195 ~CHQCrqk----t~~~~v~C~~C~r~~FC~~CL~~rY~e~------~~edv~~~CP~Crg~-----------CNCs~Clr 253 (956)
+|+.|... .++.+|.|+.|. ..|=-.||-.|-.-. ..+.+.-.|-+|.|+ =.|..|..
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs-~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~ 79 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCS-SSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKK 79 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccC-hHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCC
Confidence 58899542 367899999999 578889998886531 134556789999886 34666665
Q ss_pred cCcccc
Q 002177 254 ADNMIK 259 (956)
Q Consensus 254 ~~g~~k 259 (956)
...+.+
T Consensus 80 ~G~~c~ 85 (175)
T PF15446_consen 80 PGPSCK 85 (175)
T ss_pred CCCCCc
Confidence 554443
No 106
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=24.70 E-value=31 Score=30.16 Aligned_cols=24 Identities=38% Similarity=1.009 Sum_probs=20.0
Q ss_pred CcccccccCCCccccccccccCC----CCCc
Q 002177 315 SADEQMCCNICRIPIIDYHRHCG----NCMY 341 (956)
Q Consensus 315 ~~DERvyCDnCkTSIvD~HRSCp----~CsY 341 (956)
+.|+.|.|.-|.|+ |||+|. .|++
T Consensus 17 ~~dDiVvCp~Cgap---yHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 17 DGDDIVVCPECGAP---YHRDCWEKAGGCIN 44 (54)
T ss_pred CCCCEEECCCCCCc---ccHHHHhhCCceEe
Confidence 46888999999998 899996 4654
No 107
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=24.33 E-value=46 Score=32.20 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=22.8
Q ss_pred cCcccccccCCCcccccc-------ccccCCCCCcc
Q 002177 314 LSADEQMCCNICRIPIID-------YHRHCGNCMYD 342 (956)
Q Consensus 314 ~~~DERvyCDnCkTSIvD-------~HRSCp~CsYD 342 (956)
...+--+.|.+|....+. .|+.|++|.|-
T Consensus 16 ~klpt~f~CP~Cge~~v~v~~~k~~~h~~C~~CG~y 51 (99)
T PRK14892 16 PKLPKIFECPRCGKVSISVKIKKNIAIITCGNCGLY 51 (99)
T ss_pred cCCCcEeECCCCCCeEeeeecCCCcceEECCCCCCc
Confidence 334456779999977776 79999999983
No 108
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=23.84 E-value=31 Score=44.37 Aligned_cols=33 Identities=24% Similarity=0.882 Sum_probs=25.7
Q ss_pred eEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCCCC
Q 002177 207 VVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPACRG 244 (956)
Q Consensus 207 ~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~Crg 244 (956)
--+|..|+ ..|=++||.+|+.- -..-.||.||-
T Consensus 1488 skrC~TCk-nKFH~~CLyKWf~S----s~~s~CPlCRs 1520 (1525)
T COG5219 1488 SKRCATCK-NKFHTRCLYKWFAS----SARSNCPLCRS 1520 (1525)
T ss_pred ccccchhh-hhhhHHHHHHHHHh----cCCCCCCcccc
Confidence 34788888 47999999999963 34567999983
No 109
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.52 E-value=36 Score=39.43 Aligned_cols=52 Identities=25% Similarity=0.600 Sum_probs=32.0
Q ss_pred CCCCcccccccCCCCe------EEcCcCCCccccHhHHhhhcCCC-chhhhhhcCCCCCC
Q 002177 192 GGQICHQCRRNDRERV------VWCVKCDKRGYCDSCISTWYSDI-PLEELEKVCPACRG 244 (956)
Q Consensus 192 ~~~~CHQCrqkt~~~~------v~C~~C~r~~FC~~CL~~rY~e~-~~edv~~~CP~Crg 244 (956)
..+.|-=|+-.-.... -.=.+|. -.||..||.+|=.-. ....+...||+||.
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~-H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv 218 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCN-HSFCLNCIRKWRQATQFESKTSKSCPFCRV 218 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcc-hhhhhcHhHhhhhhhccccccccCCCcccC
Confidence 4556666664433211 0112466 589999999996321 13456789999996
No 110
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=22.44 E-value=49 Score=36.46 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=48.4
Q ss_pred eeeeeccCCChhHHHHHHHHHHHHhCCCCCCCCCccCCCCcCCceecCHHHHHHHHHHhCccceEEEeecCceEEecCCC
Q 002177 764 AHWDVFRRQDVPKLIEYLREHWTDFGRPDGVTNDFVTHPLYGEVVYLNGDHKRKLKEEFGVEPWSFEQHLGEAVFIPAGC 843 (956)
Q Consensus 764 AlWDIFrreDv~KLreyL~kh~~Ef~~~~~~~~~~v~hPIHDQ~fYLt~ehk~kLkEEyGVEpWtf~Q~lGEAVFIPAGC 843 (956)
.+-|+|-.+|-+.|---+. +..+. ++-.|--|||.+|+-.-. =++-|.+=++.=..||.+|||.|.
T Consensus 144 ~~~d~~~~~d~s~m~aGf~----~~~~~-----sf~wtl~~dEi~YVLEGe-----~~l~IdG~t~~l~pGDvlfIPkGs 209 (233)
T PRK15457 144 GLTDLVTGDDGSSMAAGFM----QWENA-----FFPWTLNYDEIDMVLEGE-----LHVRHEGETMIAKAGDVMFIPKGS 209 (233)
T ss_pred EeeeeeccCCCCceeeEEE----EEecC-----ccceeccceEEEEEEEeE-----EEEEECCEEEEeCCCcEEEECCCC
Confidence 3556666666666543321 11111 234566678888876653 246778999999999999999999
Q ss_pred ccccccc
Q 002177 844 PFQVRNL 850 (956)
Q Consensus 844 PHQVRNL 850 (956)
+|.-.+-
T Consensus 210 ~~hf~tp 216 (233)
T PRK15457 210 SIEFGTP 216 (233)
T ss_pred eEEecCC
Confidence 9876443
No 111
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=22.33 E-value=57 Score=29.91 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=28.4
Q ss_pred hCccceEEEeecCceEEecCCCcccccccc--ccceeeccccCCCCHHH
Q 002177 822 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQ--STVQLGLDFLFPESVGE 868 (956)
Q Consensus 822 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLk--SCIKVAlDFVSPEnV~e 868 (956)
+.|..=++.=..||++|||+|-+|...--. .+....+.| +|+-+.+
T Consensus 36 ~~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~-~~~~~~~ 83 (136)
T PF02311_consen 36 LHIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF-SPDFLEE 83 (136)
T ss_dssp EEETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE----GGGG
T ss_pred EEECCEEEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE-CHHHHHH
Confidence 445566677789999999999999988777 677777766 5554444
No 112
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=22.21 E-value=62 Score=34.83 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=25.3
Q ss_pred HhCccceEEEeecCceEEecCCCccccccccc
Q 002177 821 EFGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (956)
Q Consensus 821 EyGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (956)
.+.|..=++.=..||+||||+|.+|++..-.+
T Consensus 56 ~~~~~~~~~~l~~g~~~ii~~~~~H~~~~~~~ 87 (287)
T TIGR02297 56 ALQLDEHEYSEYAPCFFLTPPSVPHGFVTDLD 87 (287)
T ss_pred EEEECCEEEEecCCeEEEeCCCCccccccCCC
Confidence 35566667777799999999999999875444
No 113
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=22.16 E-value=45 Score=35.77 Aligned_cols=65 Identities=26% Similarity=0.305 Sum_probs=48.5
Q ss_pred ceeeccccCCCCHHHHHHHHHHHhcCCcchHHHHHHHHHHhhhhhhhhhHHHHHHH-HHHHHHHHHhccCCCCCcccccC
Q 002177 854 VQLGLDFLFPESVGEAVRLAEEIRCLPNDHEAKLQVLEVRQRKLFQEVGKISLYAA-SSAIKEVQKLVLDPKLGAELGFE 932 (956)
Q Consensus 854 IKVAlDFVSPEnV~eC~rLteEfR~Lp~~H~aK~d~le~~~~~~~~~Vkkm~lyA~-~~avke~~~l~~~~~~~~~~~~~ 932 (956)
|.||+||.+.| +.++|++++... .+.++ |+.-.+++. -..|++|+++.-+-+.=+++.+.
T Consensus 6 l~vALD~~~~~---~a~~l~~~l~~~-------v~~~k---------vG~~l~~~~G~~~i~~lk~~~~~~~v~~DLK~~ 66 (216)
T PRK13306 6 LQIALDNQDLE---SAIEDAKKVAEE-------VDIIE---------VGTILLLAEGMKAVRVLRALYPDKIIVADTKIA 66 (216)
T ss_pred EEEEecCCCHH---HHHHHHHHcccc-------CCEEE---------EChHHHHHhCHHHHHHHHHHCCCCEEEEEEeec
Confidence 78999999887 888899887653 25566 888888888 66788888865333455777777
Q ss_pred CCchh
Q 002177 933 DPNLT 937 (956)
Q Consensus 933 ~~~~~ 937 (956)
|+.-|
T Consensus 67 Di~~~ 71 (216)
T PRK13306 67 DAGKI 71 (216)
T ss_pred CCcHH
Confidence 77744
No 114
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=21.80 E-value=45 Score=25.25 Aligned_cols=26 Identities=35% Similarity=1.073 Sum_probs=21.1
Q ss_pred cCCCccccccc-cccCCCCCcchhhhh
Q 002177 322 CNICRIPIIDY-HRHCGNCMYDLCLSC 347 (956)
Q Consensus 322 CDnCkTSIvD~-HRSCp~CsYDLCLsC 347 (956)
|+.|...|-.+ -=+|..|.|.|-+.|
T Consensus 3 C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 3 CDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 78888888888 778888888887776
No 115
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.44 E-value=72 Score=37.83 Aligned_cols=35 Identities=26% Similarity=0.727 Sum_probs=26.5
Q ss_pred CCccc--cccc----CCCCeEEcCcCCCccccHhHHhhhcCC
Q 002177 194 QICHQ--CRRN----DRERVVWCVKCDKRGYCDSCISTWYSD 229 (956)
Q Consensus 194 ~~CHQ--Crqk----t~~~~v~C~~C~r~~FC~~CL~~rY~e 229 (956)
..|.. |+-- .-..++.|++|+ -.||.-|..+|.|.
T Consensus 274 ~yCPr~~Cq~p~~~d~~~~l~~CskCn-FaFCtlCk~t~HG~ 314 (445)
T KOG1814|consen 274 VYCPRACCQLPVKQDPGRALAICSKCN-FAFCTLCKLTWHGV 314 (445)
T ss_pred ccCChhhccCccccCchhhhhhhccCc-cHHHHHHHHhhcCC
Confidence 45555 4433 234689999999 79999999999993
No 116
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.41 E-value=17 Score=35.44 Aligned_cols=51 Identities=25% Similarity=0.552 Sum_probs=0.0
Q ss_pred CCccCcCCCCcccccccC---CCCeEEcCcCCCccccHhHHhhhcCCCchhhhhhcCCCC
Q 002177 186 NSSEDTGGQICHQCRRND---RERVVWCVKCDKRGYCDSCISTWYSDIPLEELEKVCPAC 242 (956)
Q Consensus 186 ~~~~~~~~~~CHQCrqkt---~~~~v~C~~C~r~~FC~~CL~~rY~e~~~edv~~~CP~C 242 (956)
+.+...+...|.-|.++. .+....|..|+ ..+|..|-.. ...+..|.|-+|
T Consensus 47 ~~~~~~~~~~C~~C~~~fg~l~~~~~~C~~C~-~~VC~~C~~~-----~~~~~~WlC~vC 100 (118)
T PF02318_consen 47 GNSQKYGERHCARCGKPFGFLFNRGRVCVDCK-HRVCKKCGVY-----SKKEPIWLCKVC 100 (118)
T ss_dssp SCSTTHCCSB-TTTS-BCSCTSTTCEEETTTT-EEEETTSEEE-----TSSSCCEEEHHH
T ss_pred ccccccCCcchhhhCCcccccCCCCCcCCcCC-ccccCccCCc-----CCCCCCEEChhh
No 117
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=21.40 E-value=48 Score=32.38 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=17.7
Q ss_pred ccccCCCcc--ccccccccCCCCC
Q 002177 319 QMCCNICRI--PIIDYHRHCGNCM 340 (956)
Q Consensus 319 RvyCDnCkT--SIvD~HRSCp~Cs 340 (956)
+.+|..|.. ++-+++-.||+|.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cg 93 (113)
T PRK12380 70 QAWCWDCSQVVEIHQHDAQCPHCH 93 (113)
T ss_pred EEEcccCCCEEecCCcCccCcCCC
Confidence 689999975 5556777799997
No 118
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.02 E-value=34 Score=32.81 Aligned_cols=14 Identities=43% Similarity=1.533 Sum_probs=12.4
Q ss_pred cccHhHHhhhcCCC
Q 002177 217 GYCDSCISTWYSDI 230 (956)
Q Consensus 217 ~FC~~CL~~rY~e~ 230 (956)
.||..||.+||.+-
T Consensus 42 gFCRNCLs~Wy~ea 55 (104)
T COG3492 42 GFCRNCLSNWYREA 55 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999873
No 119
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=20.70 E-value=71 Score=33.15 Aligned_cols=21 Identities=24% Similarity=0.613 Sum_probs=15.9
Q ss_pred ccceEEEeecCceEEecCCCc
Q 002177 824 VEPWSFEQHLGEAVFIPAGCP 844 (956)
Q Consensus 824 VEpWtf~Q~lGEAVFIPAGCP 844 (956)
+++=++.=+.||+||||.|.-
T Consensus 110 ~~G~~~~A~~GDvi~iPkGs~ 130 (152)
T PF06249_consen 110 IDGQTVTAKPGDVIFIPKGST 130 (152)
T ss_dssp ETTEEEEEETT-EEEE-TT-E
T ss_pred ECCEEEEEcCCcEEEECCCCE
Confidence 568899999999999999963
No 120
>PRK13503 transcriptional activator RhaS; Provisional
Probab=20.19 E-value=52 Score=35.16 Aligned_cols=31 Identities=6% Similarity=0.022 Sum_probs=23.5
Q ss_pred hCccceEEEeecCceEEecCCCccccccccc
Q 002177 822 FGVEPWSFEQHLGEAVFIPAGCPFQVRNLQS 852 (956)
Q Consensus 822 yGVEpWtf~Q~lGEAVFIPAGCPHQVRNLkS 852 (956)
+.|..=++.=..||++|||+|.+|...+...
T Consensus 48 ~~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~ 78 (278)
T PRK13503 48 HVFNGQPYTLSGGTVCFVRDHDRHLYEHTDN 78 (278)
T ss_pred eEecCCcccccCCcEEEECCCccchhhhccC
Confidence 3344445555789999999999999877665
No 121
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=20.09 E-value=71 Score=26.78 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=24.6
Q ss_pred ccCCCccccccccccCCCCC-cchhhhhhHHhh
Q 002177 321 CCNICRIPIIDYHRHCGNCM-YDLCLSCCQDLR 352 (956)
Q Consensus 321 yCDnCkTSIvD~HRSCp~Cs-YDLCLsCC~ELR 352 (956)
.||.|..-+...+=+|.++. ||||-.|-.+=|
T Consensus 2 ~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~G~ 34 (45)
T cd02336 2 HCFTCGNDCTRVRYHNLKAKKYDLCPSCYQEGR 34 (45)
T ss_pred cccCCCCccCceEEEecCCCccccChHHHhCcC
Confidence 48888877776666677776 999999998533
No 122
>PF08990 Docking: Erythronolide synthase docking; InterPro: IPR015083 The N-terminal docking domain found in modular polyketide synthase assumes an alpha-helical structure, wherein two alpha-helices are connected by a short loop. Two such N-terminal domains dimerise to form amphipathic parallel alpha-helical coiled coils: dimerisation is essential for protein function []. ; GO: 0016740 transferase activity, 0048037 cofactor binding; PDB: 2HG4_E.
Probab=20.02 E-value=62 Score=24.61 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=12.6
Q ss_pred ChhHHHHHHHHHHHHh
Q 002177 773 DVPKLIEYLREHWTDF 788 (956)
Q Consensus 773 Dv~KLreyL~kh~~Ef 788 (956)
+-+||++||++...|.
T Consensus 3 ~e~kLr~YLkr~t~eL 18 (27)
T PF08990_consen 3 NEDKLRDYLKRVTAEL 18 (27)
T ss_dssp -HCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 4579999999987665
Done!