BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002180
(955 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P52948|NUP98_HUMAN Nuclear pore complex protein Nup98-Nup96 OS=Homo sapiens GN=NUP98
PE=1 SV=4
Length = 1817
Score = 273 bits (699), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 283/1050 (26%), Positives = 468/1050 (44%), Gaps = 196/1050 (18%)
Query: 43 VLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIV 102
+L YYT P ++DL K + + V DFT+GR GYG + F G+ ++ L+LD IV
Sbjct: 735 ILTKVGYYTIPSMDDLAK--ITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIV 792
Query: 103 KFGRHEIVVYEDESSKPEVGQGLNKAAEVTL---FLQGRYLSLKLKEGD--SD-DFVKKM 156
R E+VVY D++ KP VG+GLN+ AEVTL + + +K D +D ++ ++
Sbjct: 793 HIRRKEVVVYLDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRL 852
Query: 157 KERTERQGARFVSFDPVSGEWKFLVVHFSRFGLSDDEEDD-----------------IMM 199
+ + +QGA+F + P +G W F V HFS++GL D +E++
Sbjct: 853 EAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEEEEHPSKTSTKKLKTAPLPPA 912
Query: 200 DDATPVQNSLEMNG----------------GEVSDVDEE-----------TQMDLSGPE- 231
TP+Q + +NG G V ++D + T ++ S PE
Sbjct: 913 SQTTPLQ--MALNGKPAPPPQSQSPEVEQLGRVVELDSDMVDITQEPVLDTMLEESMPED 970
Query: 232 -----LSHSLPAHLGLDPIKMKEMRMVMFQEEEEID-----DFSGTPSRQQWSLGKEYIR 281
S + + LG++P ++ M+ + +EE++D FS PS+ S +E
Sbjct: 971 QEPVSASTHIASSLGINPHVLQIMKASLLTDEEDVDMALDQRFSRLPSKADTS--QEICS 1028
Query: 282 PPLQNTAQRMSQRSS----------------SPLAR----KTP--VGLLEYHPGNSDSDS 319
P L +A S+ S SP +TP L+ +S S
Sbjct: 1029 PRLPISASHSSKTRSLVGGLLQSKFTSGAFLSPSVSVQECRTPRAASLMNIPSTSSWSVP 1088
Query: 320 PGMILMAQQNKGMPLKKLKSDGFKLDL---KHETPVTGSHSHNIVDAGLFMGRAFRVGWG 376
P + + P LK+ G + L E VT ++D LFMGR+FRVGWG
Sbjct: 1089 PPLTSVFTMPSPAPEVPLKTVGTRRQLGLVPREKSVTYGKGKLLMDMALFMGRSFRVGWG 1148
Query: 377 PNGILVHSGA------------------------PVGSNSRGVISSVINVEKVAIDKVVR 412
PN L +SG PV +++EK+++ +
Sbjct: 1149 PNWTLANSGEQLNGSHELENHQIADSMEFGFLPNPVAVKPLTESPFKVHLEKLSLRQRKP 1208
Query: 413 DENDKVRKELVDFSFDAPLNLHKELNHETEEVEVGSYKLKLQKVVSNSLMLSEICRSYID 472
DE+ K+ + PL L +L H T V+ +L ++ +L ++ + Y D
Sbjct: 1209 DEDMKL--------YQTPLEL--KLKHSTVHVD------ELCPLIVPNLGVA-VIHDYAD 1251
Query: 473 -IIEAQLDVPGVSSSTRLVLMHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKD 531
+ EA D+P ++ H + W L + L+ G L+ E D E + I+
Sbjct: 1252 WVKEASGDLPEAQ-----IVKHWSLTWTLCEALW------GHLK-ELDSQLNEPREYIQI 1299
Query: 532 GPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDESNYLKHIFLLLTGRQLDSSVE 591
L RR FS WL + +++E+VS +++ ++ +F LTG+++ +
Sbjct: 1300 -----------LERRRAFSRWLSCTATPQIEEEVSLTQKNSPVEAVFSYLTGKRISEACS 1348
Query: 592 LAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIH 651
LA GD RLA LLSQ GS R + QL W D FI+ +R+R++ LLAG
Sbjct: 1349 LAQQSGDHRLALLLSQFVGSQSVRELLTMQLVDWHQLQAD-SFIQDERLRIFALLAGKPV 1407
Query: 652 SSLND-------VTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLL-----DDGKAPLPV 699
L++ +DWKR L + +WY LPP S++ Y+ D A P+
Sbjct: 1408 WQLSEKKQINVCSQLDWKRSLAIHLWYLLPPTASISRALSMYEEAFQNTSDSDRYACSPL 1467
Query: 700 PIYVD-EGPIDEPIDWSGNERNDLSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHM 758
P Y++ G + S D+ ++L+ L++ + L + S T DPLDY +
Sbjct: 1468 PSYLEGSGCVIAEEQNSQTPLRDVCFHLLKLYS---DRHYDLNQLLEPRSITADPLDYRL 1524
Query: 759 IWHQREVLAAVGV--ISSNDLQILDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQAT 816
WH EVL A+ +S+ +L QL +G WAI+V+LH+ D ++
Sbjct: 1525 SWHLWEVLRALNYTHLSAQCEGVLQASYAGQLESEGLWEWAIFVLLHI----DNSGIREK 1580
Query: 817 LIREILFQYCESWSSEESQRK---FIEALGVPSEWLHEAMAVYYNYYGELSKALEH--FL 871
+RE+L ++C+ + ES K + L VP++W+HEA AV + E K LE
Sbjct: 1581 AVRELLTRHCQLLETPESWAKETFLTQKLRVPAKWIHEAKAVRAHM--ESDKHLEALCLF 1638
Query: 872 ECANWQKAHSIFVTSVAHTLFLSANHSDVWTLATSMES--HKSEIENWDLGAGMYI---- 925
+ +W + H + + +A ++ N+ + + S I++W+ +Y+
Sbjct: 1639 KAEHWNRCHKLIIRHLASDAIINENYDYLKGFLEDLAPPERSSLIQDWETSGLVYLDYIR 1698
Query: 926 VFYLIRSSLQEENNTMSDL--VRIKKTQHC 953
V ++R +Q+ + + +DL + IK T C
Sbjct: 1699 VIEMLR-HIQQVDCSGNDLEQLHIKVTSLC 1727
>sp|P49793|NUP98_RAT Nuclear pore complex protein Nup98-Nup96 OS=Rattus norvegicus
GN=Nup98 PE=1 SV=2
Length = 1816
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 166/622 (26%), Positives = 277/622 (44%), Gaps = 105/622 (16%)
Query: 360 IVDAGLFMGRAFRVGWGPNGILVHSGA------------------------PVGSNSRGV 395
++D LFMGR+FRVGWGPN L +SG PV S
Sbjct: 1131 LMDMALFMGRSFRVGWGPNWTLANSGEQLHGSHELENHQVAESMEYGFLPNPVAVKSLSE 1190
Query: 396 ISSVINVEKVAIDKVVRDENDKVRKELVDFSFDAPLNLHKELNHETEEVEVGSYKLKLQK 455
+++EK+ + + DE+ ++ + PL L +L H T V+ +L
Sbjct: 1191 SPFKVHLEKLGLRQRKLDEDLQL--------YQTPLEL--KLKHSTVHVD------ELCP 1234
Query: 456 VVSNSLMLSEICRSYIDIIEAQ----LDVPGVSSSTRLVLMHQVMVWELIKVLFSE-REN 510
++ + +S + Y D ++ L++P ++ H + W L + L+ +E
Sbjct: 1235 LIVPNPGVS-VIHGYADWVKKSPRDLLELP--------IVKHWSLTWTLCEALWGHLKEL 1285
Query: 511 GGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDE 570
QL D E +Q ++ RR FS WL + +++E+VS
Sbjct: 1286 DSQL-----DEPSEYIQTLE--------------RRRAFSRWLSHTAAPQIEEEVSLTRR 1326
Query: 571 SNYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGL 630
+ ++ +F LTG ++ + LA GD RLA LLSQ GS R + QL W
Sbjct: 1327 DSPIEAVFSYLTGSRISEACCLAQQSGDHRLALLLSQLVGSQSVRELLTMQLADWHQLQA 1386
Query: 631 DFKFIEKDRIRLYELLAGHIHSSLND-------VTIDWKRFLGLLMWYQLPPETSLAIVF 683
D FI +R+R++ LLAG L++ +DWKR L + +WY LPP S++
Sbjct: 1387 D-SFIHDERLRIFALLAGKPVWQLSEQKQINVCSQLDWKRTLAIHLWYLLPPTASISRAL 1445
Query: 684 QTYQHLLD-----DGKAPLPVPIYVD-EGPIDEPIDWSGNERNDLSYYLMLLHASGESKF 737
Y+ D A P+P Y++ G + E D+ ++L+ L++ + +
Sbjct: 1446 SMYEEAFQNTCEGDKYACPPLPSYLEGSGCVVEEEKDPQRPLQDVCFHLLKLYS--DRHY 1503
Query: 738 GSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGV--ISSNDLQILDMGLVSQLLCQGKCH 795
G L + S T DPLDY + WH EVL A+ +S +L QL +G
Sbjct: 1504 G-LNQLLEPRSITADPLDYRLSWHLWEVLRALNYTHLSEQCEGVLQASYAGQLESEGLWE 1562
Query: 796 WAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRK---FIEALGVPSEWLHEA 852
WAI+V LH+ D ++ +RE+L ++C+ + ES K + L VP+EW+HEA
Sbjct: 1563 WAIFVFLHI----DNSGMREKAVRELLTRHCQLSETPESWAKETFLTQKLCVPAEWIHEA 1618
Query: 853 MAVYYNYYGELSKALE--HFLECANWQKAHSIFVTSVAHTLFLSANHSDVWTLATSMES- 909
AV + E +K LE + + +W + H + V +A ++ N+ + +
Sbjct: 1619 KAVRAHM--ESNKHLEALYLFKAGHWNRCHKLVVRHLASDAIINENYDYLKGFLEDLAPP 1676
Query: 910 -HKSEIENWDLGAGMYIVFYLI 930
S I++W+ +Y+ + +
Sbjct: 1677 ERSSLIQDWETSGLVYLDYIRV 1698
Score = 110 bits (274), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 110/195 (56%), Gaps = 13/195 (6%)
Query: 43 VLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIV 102
VL YYT P ++DL K + + V DFT+GR GYG + F G+ ++ L+LD IV
Sbjct: 735 VLTKVGYYTIPSMDDLAK--ITNEKGECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIV 792
Query: 103 KFGRHEIVVYEDESSKPEVGQGLNKAAEVTL---FLQGRYLSLKLKEGD--SD-DFVKKM 156
R E++VY D++ KP VG+GLN+ AEVTL + + +K D +D ++ ++
Sbjct: 793 HIRRKEVIVYVDDNQKPPVGEGLNRKAEVTLDGVWPTDKTSRCLIKSPDRLADINYEGRL 852
Query: 157 KERTERQGARFVSFDPVSGEWKFLVVHFSRFGLSDDEEDDIMMDDATPVQNSLEMNGGEV 216
+ + +QGA+F + P +G W F V HFS++GL D +E++ ++ P S ++ +
Sbjct: 853 EAVSRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEEE---EEHPPKTTSKKLKTAPL 909
Query: 217 SDVDEET--QMDLSG 229
+ T QM L+G
Sbjct: 910 PPAGQATTFQMTLNG 924
>sp|Q54EQ8|NUP98_DICDI Nuclear pore complex protein Nup98-Nup96 OS=Dictyostelium discoideum
GN=nup98 PE=3 SV=1
Length = 2053
Score = 139 bits (351), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 141/617 (22%), Positives = 267/617 (43%), Gaps = 92/617 (14%)
Query: 357 SHNIVDAGLFMGRAFRVGWGPNGILVHSGAPVGSNSRGVISSVINVEKVAIDKVVRDEND 416
+H+ D LFM R+FRVGW P G L+ + S + + + I K+ D +
Sbjct: 1400 NHSTQDVSLFMRRSFRVGWAPGGKLIS-----------ITKS--SFKNLLIKKLPTDTKE 1446
Query: 417 KVRKELVDFSFDAPLNLHKELNHETEEVE-VGSYKL-KLQKVVSNSLMLSEICRSYIDII 474
++ ++ F N H + E ++ +G + + +Q+ + + L L
Sbjct: 1447 DKKESIIKFL----KNHHSHSSLVPENLKSIGWFSISNVQEQIESQLTL----------- 1491
Query: 475 EAQLDVPGVSSSTRLVLMHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPP 534
+VP S ++ +W LI L+ G + + E+
Sbjct: 1492 ----NVPSSQS------VYYNRIWSLISNLWGNVLKGNGSKYINTNYSEDT--------- 1532
Query: 535 EFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDE---SNYLKHIFLLLTGRQLDSSVE 591
IR+ + WLK+ + +++++ SL + SNYL+ IF L+ +Q+ + +
Sbjct: 1533 ---------IRKLNLNQWLKDVIAPLLRDEMDSLRKKTNSNYLEQIFSYLSAKQIKEASD 1583
Query: 592 LAASRGDVRLACLLSQAGGSTVSRSD-IAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHI 650
LA D RLA ++SQ S+ S + I QL + NG D +FI + R+ + L+AG +
Sbjct: 1584 LANENKDFRLATMMSQIWSSSESGKELILKQLTTYHSNGSD-EFINEKRLEILHLIAGSV 1642
Query: 651 HSSLNDVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYV------D 704
+ ++ DW R + W++ E S+ + ++ + ++ P+P Y+ +
Sbjct: 1643 NKIYKNLN-DWIRCFAVSFWFKYSLEYSIEDSVENFERSFNAHRSVYPLPPYLIKSTSTN 1701
Query: 705 EGPIDEPIDWSGNERNDLSYYLMLLHA--SGESKFGSLKTMFNALSSTYDPLDYHMIWHQ 762
I+E + D+ + L+ L A G S F K +F + D LDYH+ W+
Sbjct: 1702 SKQIEEQQHYY-----DICFLLLKLFAVNRGSSHFDKFKNIFYPENIGQDLLDYHLSWNL 1756
Query: 763 REVLAAVGVISSNDLQILDMGLVSQLLCQ----GKCHWAIYVVLHMPRCDDYPYLQATLI 818
VL ++ ++ + L S Q G W+IYV+LH P D +++ +
Sbjct: 1757 YTVLKSIPSLNKQPDLVNASNLHSSFALQLERLGLWQWSIYVLLHTP--DQSNHVREEAV 1814
Query: 819 REILFQYCESWSSEESQRKFIEA-LGVPSEWLHEAMAVY--YNYYGELSKALEHFLECAN 875
+ ++ + +SE+ R F+ L +P W+ EA A Y Y+ ++ ++ +
Sbjct: 1815 KSLIARAAPVITSED--RVFLTTKLHIPEIWIDEAKAWYSGYDCNNDIYDQIDALFKSYQ 1872
Query: 876 WQKAHSIFVTSVAHTLFLSANHSDVWTLATSMESHKSEIENWDLGAGMYIVFYLI----R 931
+ K H I +++ + + + L +E H S I W G +++ F I +
Sbjct: 1873 YTKIHDIIFSNIGPNYIIQKRYHSLKDLLIRLEPHSSFISTWRYGGSIFLEFADICIQYK 1932
Query: 932 SSLQEENNTMSDLVRIK 948
L + +NT ++ R K
Sbjct: 1933 EILSQLSNTAEEIQRTK 1949
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 86/159 (54%), Gaps = 7/159 (4%)
Query: 42 PVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQI 101
P L Y P + +L K+ D SS V FT+ R G G + F G+T++ LDLD I
Sbjct: 1021 PKLTRDGYQCVPSIKELSKK--TDKELSS-VQGFTISRDGCGSIYFPGSTNLVALDLDDI 1077
Query: 102 VKFGRHEIVVYEDESSKPEVGQGLNKAAEVTL---FLQGRYLSLKLKEGDS-DDFVKKMK 157
V E+ VY+DE +KPE+G GLN+ A VTL + + + + ++G D + +K
Sbjct: 1078 VDIEPREVSVYKDEETKPEIGYGLNRDAVVTLENCWPKNKNGEVVKEDGTILDKYENALK 1137
Query: 158 ERTERQGARFVSFDPVSGEWKFLVVHFSRFGLSDDEEDD 196
+ + + FVS+ +G W F V HFS++ D +EDD
Sbjct: 1138 KVSAKSDCGFVSYSRSNGTWVFTVKHFSKYSAPDFDEDD 1176
>sp|G5EEH9|NUP98_CAEEL Nuclear pore complex protein Nup98-Nup96 OS=Caenorhabditis elegans
GN=npp-10 PE=2 SV=1
Length = 1678
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 217/942 (23%), Positives = 369/942 (39%), Gaps = 163/942 (17%)
Query: 44 LCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVK 103
L PDY++ P +N++ + +I G TVGR YG V + G +++ + LD+IV
Sbjct: 775 LTKPDYFSLPTINEM--KNMIKNGRVVLEDGLTVGRSSYGSVYWPGRVELKDVALDEIVV 832
Query: 104 FGRHEIVVYEDESSKPEVGQGLNKAAEVTLFLQGRYLSLKLKEGDSDDFVK--------K 155
F E+ VY +E K GQ LN+ AEVTL + + + K + + D VK
Sbjct: 833 FRHREVTVYPNEEEKAPEGQELNRPAEVTL--ERVWYTDKKTKKEVRDVVKLSEIGWREH 890
Query: 156 MKERTERQGARFVSFDPVSGEWKFLVVHFSRFGLSDDEED------DIMMDDATPVQNSL 209
++ +T R GA F F +G W F V HFS++GL+DD+E + ++P+Q +
Sbjct: 891 LERQTIRMGAAFKDFRAETGSWVFRVDHFSKYGLADDDEPMDGSPPQQALQASSPLQ-VI 949
Query: 210 EMNGGEVSDVDEETQMDL--SGPELSHS--------LPAHLG-LDPIKMKEMRMVMFQEE 258
+MN DV+ + Q + H PA LG + PI + R +
Sbjct: 950 DMNT-SARDVNNQVQRKKVHKATDAHHQEIILERVPAPAALGDVVPIIRRVNRKGL--GG 1006
Query: 259 EEIDDFSGTPSRQQWSLGK---EYIRPPLQNTAQRMSQRSSSPLARKTPVGLLEYHPGNS 315
+DD SR++ +G E+ + + Q P + + LEY
Sbjct: 1007 GTLDD-----SREESCIGNMTTEFNESGHDSIIEEGQQPEKKP--KLELLADLEY----- 1054
Query: 316 DSDSPGMILMAQQNKGMPLKKLKSDGFKLDLKHETPVTGSHSHNIVDAGLFMGRAFRVGW 375
+S I Q+ K MP + F H + G ++D G+ GR+ VGW
Sbjct: 1055 --ESSRFIRNLQELKVMPKANDPAHRFHGG-GHSAKMIGYGKSKLIDIGIVKGRSSHVGW 1111
Query: 376 GPNGILVHSGAPVGSNSRGVISSVINVEKVAIDKVVRDENDKVRKELVDFSFDAPLNLHK 435
G LV S P + V ID+ D N+ ++D +N+H
Sbjct: 1112 SETGCLVWSAQPRHNQ----------VLFGTIDRT-SDVNENTLISMLD------VNVH- 1153
Query: 436 ELNHETEEVEVGSYKLKLQKVVSNSLMLSEICRSYIDIIEAQLDVPGVSSSTRLVLMHQV 495
++ + + + SN + S+ SY + +DV V
Sbjct: 1154 -VSETSRKGPSSQSNSVKSSLTSNFVTYSD---SYSSMFAKYIDVAQAGG-----YDGHV 1204
Query: 496 MVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKE 555
VW+LI LF P E R E WL+
Sbjct: 1205 SVWKLISALF----------------------------PYERREGWSFERGEEIGEWLRT 1236
Query: 556 SVCHRVQEDVSSLDESNYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSR 615
V +D S+ SN + + L +D + ++A +LA +L S V
Sbjct: 1237 EAVKSVPDDRSADTSSNGVWNQLCL---GDIDKAFQIAIDNNQPQLATMLQT---SAVCP 1290
Query: 616 SDIAH----QLDLWRVNGLDFKFIEKDRIRLYELLAGHIH---------SSLNDV-TIDW 661
H QLD W+ I K+ ++ Y L++G H S+N + ++W
Sbjct: 1291 EATVHCFKAQLDNWK-KCETLHLIPKETLKCYVLMSGLSHYEWDQDGKNHSINCLDGLNW 1349
Query: 662 KRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERND 721
+ LGL +WY L T L + YQ ++ G+A + R D
Sbjct: 1350 IQALGLHVWY-LRAWTGLEESYDAYQKDVNAGRA--------------------ASNRGD 1388
Query: 722 LSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVG--VISSNDLQI 779
L L+ L + S++ + + ++ +P DY + WH +L +VG +S
Sbjct: 1389 LPGELIKLACESQH---SVEVVLDC-AAGENPNDYFLQWHVWSLLYSVGYRTMSKTSETR 1444
Query: 780 LDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFI 839
L SQL +A++V+ H+ D ++T +R +L + ++ +
Sbjct: 1445 LHRNYSSQLEASSLSKYALFVLQHI----DDDEERSTAVRSLLDRIAR-FTDNDMFDSIS 1499
Query: 840 EALGVPSEWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTLFLSANHSD 899
E +PSEW+ +A + ++ E + N+ + +FV +A T ++ +H
Sbjct: 1500 EQFDIPSEWIADAQFSIAKSVDDSTQLFELAVAAKNYLEICRLFVDDIAPTAVVAGDHDA 1559
Query: 900 VWTLATSMESHKSEIENWDLGAGMYI----VFYLIRSSLQEE 937
+ + +++I W +Y + LI + +EE
Sbjct: 1560 LKAACAMVRPFENQIPEWGATGMVYTDYCRLINLIENDAEEE 1601
>sp|Q9UTK4|NU189_SCHPO Nucleoporin nup189 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup189 PE=1 SV=1
Length = 1778
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 193/498 (38%), Gaps = 82/498 (16%)
Query: 471 IDIIEAQLDVPGVSSSTRLVLM-----------HQVMVWELIKVLFSERENGGQLRSEGD 519
+D E LD+ G +++ M ++ +VW+L +LF + L SE
Sbjct: 1235 LDQTEVYLDLSGTHAASPRSSMTVKPLSLCSSGYESIVWDLTSILFDPKNY--SLPSELS 1292
Query: 520 DNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDESNYLKHIFL 579
E++ L+R + S W+ +++ H + S + I++
Sbjct: 1293 SEAREVLYQ-------------KLVRES-LSEWITKTLEHETTTLAKEAETSE--ERIYI 1336
Query: 580 LLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDR 639
LLTG + + E A + RL+ L+ + ++ QL+ WR +G D FI K
Sbjct: 1337 LLTGNLIGQACEEAVQSQNNRLSTLIPLVNSDVDIQQEVKQQLEEWRKHG-DLPFINKFT 1395
Query: 640 IRLYELLAG---------------HIHSSLNDVTIDWKRFLGLLMWYQLPPETSLAIVFQ 684
++ELL+G ++ S + W R GL +WY + S+ Q
Sbjct: 1396 RLIFELLSGNTDIAEGCGTKGDEDYVQSIPITKNMTWLRAFGLKLWYNT--DISIGEAMQ 1453
Query: 685 TYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYYLMLLHASGESKFGSLKTMF 744
Y L + PI G E D+ Y L+ +A G S L+ +
Sbjct: 1454 LYVESLQKFPEIMQKPIATSA--------VQGIEVYDIIYLLLKAYAMGTS----LEELT 1501
Query: 745 NALSSTYDPLDYHMIWHQREVLA-----------AVGVISSNDLQI-------LDMGLVS 786
S+ PL+Y ++W L+ V + + DL+ L + S
Sbjct: 1502 IPESAKCSPLNYRVVWQLAIYLSKARSLCDFSDRVVDINMAEDLKPISVHSDQLTLAYAS 1561
Query: 787 QLLCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIEALGVPS 846
QL G+ W+++V+LH+ + + + L + + E IE L +P
Sbjct: 1562 QLEASGQWLWSLFVLLHLENVETRTSTITSCLARNLRGGLGAGAVE-----MIEKLCIPE 1616
Query: 847 EWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTLFLSANHSDVWTLATS 906
WL+EA A+Y Y G+ L E A ++ AH + + ++A +S N + +
Sbjct: 1617 SWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDTLAPQAVISGNKTQLKKALEG 1676
Query: 907 MESHKSEIENWDLGAGMY 924
+ +W G +Y
Sbjct: 1677 FNGQTDGLASWRFGGQIY 1694
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 17/167 (10%)
Query: 43 VLCSPDYYTEPLLNDLGK--REVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDL-- 98
V+ S DY+ +P + +L K +E + V F+VGR GYG V FL D+ +
Sbjct: 790 VVLSDDYWMKPSIEELSKYPKEKL-----CSVHQFSVGRTGYGQVAFLKPVDLSGFEKLE 844
Query: 99 ---DQIVKFGRHEIVVYEDESSKPEVGQGLNKAAEVTL---FLQGRYLSLKLKEGDSDDF 152
++V F R VY E S P +G+GLN A +TL + R +K+ + +
Sbjct: 845 DIPGKVVVFERKICAVYPVEGSSPPLGEGLNVPAIITLEKTWPLSRETREPIKDPQNPRY 904
Query: 153 VKKMKERTERQGARFVSFDPVSGEWKFLVVHFSRFGLSDDEEDDIMM 199
++ +K + F+ F+ G+W F V HFSR+GL DDEE++ M
Sbjct: 905 IQHVKRLHRIKDTEFIDFN--DGKWIFKVQHFSRYGLLDDEEEENDM 949
>sp|P49687|NU145_YEAST Nucleoporin NUP145 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NUP145 PE=1 SV=1
Length = 1317
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 68/133 (51%), Gaps = 18/133 (13%)
Query: 72 VPDFTVGRLGYGYVKFLGNTDVRWLD-------LDQIVKFGRHEIV-VYEDESSKPEVGQ 123
V +F +GR GYG + F + D+ +IV F + V VY DE++KP +G
Sbjct: 481 VSNFVIGRRGYGCITFQHDVDLTAFTKSFREELFGKIVIFRSSKTVEVYPDEATKPMIGH 540
Query: 124 GLNKAAEVTLFLQGRY-LSLKLKE--GDSDDF----VKKMKERTERQGARFVSFDPVSGE 176
GLN A +TL + Y + K K+ D+ F V K R+ R+ ++S++P G
Sbjct: 541 GLNVPAIITL--ENVYPVDKKTKKPMKDTTKFAEFQVFDRKLRSMRE-MNYISYNPFGGT 597
Query: 177 WKFLVVHFSRFGL 189
W F V HFS +GL
Sbjct: 598 WTFKVNHFSIWGL 610
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 90/427 (21%), Positives = 168/427 (39%), Gaps = 58/427 (13%)
Query: 545 RRAEFSCWLKESVCHRVQEDVSSLDESNYLKHIFLLLTGRQLDSSVELAASRGDVRLACL 604
R + W+ + ++E + + SN ++ IFL L + + +LA + L+ L
Sbjct: 870 RHCRLTSWIVSQIGPEIEEKIR--NSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVL 927
Query: 605 LSQAGGSTVSRSDIAH-QLDLWRVNGLDFKFIEKDRIRLYELLAGHIHSSLNDVT----- 658
+S G + D+A QL W G I+K+ ++Y+LL+G L +
Sbjct: 928 ISYLGSNDPRIRDLAELQLQKWSTGGCS---IDKNISKIYKLLSGSPFEGLFSLKELESE 984
Query: 659 IDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNE 718
W L L + Y E SL + Q++ LD P PI V
Sbjct: 985 FSWLCLLNLTLCYGQIDEYSLESLVQSH---LDKFSLPYDDPIGV--------------- 1026
Query: 719 RNDLSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVG--VISSND 776
+ L+A+ E+ + ++ + + LD W+ + L G V S
Sbjct: 1027 -------IFQLYAANENT----EKLYKEVRQRTNALDVQFCWYLIQTLRFNGTRVFSKET 1075
Query: 777 LQILDMGLVSQL-LCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQ 835
+QL Q H +++V + +D + T+ R ++ + +S +
Sbjct: 1076 SDEATFAFAAQLEFAQLHGH-SLFVSCFL---NDDKAAEDTIKRLVMREITLLRAS--TN 1129
Query: 836 RKFIEALGVPSEWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTLFLSA 895
+ L +PS+ + A A+ Y G +++ L +++ A VTS+ L LS
Sbjct: 1130 DHILNRLKIPSQLIFNAQALKDRYEGNYLSEVQNLLLGSSYDLAEMAIVTSLGPRLLLSN 1189
Query: 896 N---HSDVWTLATSM-ESHKSEIENWDLGAGMYIVFYLIRSSLQEENNTMSDLVRIKKT- 950
N ++++ TL + E SE + W + ++ V+ + E T+ L+ K
Sbjct: 1190 NPVQNNELKTLREILNEFPDSERDKWSVSINVFEVYLKLVLDNVETQETIDSLISGMKIF 1249
Query: 951 ----QHC 953
+HC
Sbjct: 1250 YDQYKHC 1256
>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NUP100 PE=1 SV=1
Length = 959
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 48 DYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQI----VK 103
+YY P + LG + +I+ ++ + +G YG V+FL D+ LD + V
Sbjct: 816 NYYISPSIETLGNKSLIE---LRKINNLVIGHRNYGKVEFLEPVDLLNTPLDTLCGDLVT 872
Query: 104 FGRHEIVVYEDESSKPEVGQGLNKAAEVTL---FLQGRYLSLKLKEGDSDDFVKKMKERT 160
FG +YE+ S KPE G+G+N VTL F + +K + + +
Sbjct: 873 FGPKSCSIYENCSIKPEKGEGINVRCRVTLYSCFPIDKETRKPIKNITHPLLKRSIAKLK 932
Query: 161 ERQGARFVSFDPVSGEWKFLVVH 183
E +F S+DPV+G + + + H
Sbjct: 933 ENPVYKFESYDPVTGTYSYTIDH 955
>sp|Q02630|NU116_YEAST Nucleoporin NUP116/NSP116 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NUP116 PE=1 SV=2
Length = 1113
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 48 DYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQ----IVK 103
+YY P L+ L ++ +VP VG YG ++FL D+ + L I+
Sbjct: 969 NYYISPSLDTLSSYSLLQ---LRKVPHLVVGHKSYGKIEFLEPVDLAGIPLTSLGGVIIT 1025
Query: 104 FGRHEIVVYEDESSKPEVGQGLNKAAEVTLF---LQGRYLSLKLKEGDSDDFVKKMKERT 160
F ++Y + ++P+ G+G+N A +T F + +K+ + VK+ ER
Sbjct: 1026 FEPKTCIIYANLPNRPKRGEGINVRARITCFNCYPVDKSTRKPIKD-PNHQLVKRHIERL 1084
Query: 161 ERQ-GARFVSFDPVSGEWKFLVVH 183
++ ++F S+D SG + F+V H
Sbjct: 1085 KKNPNSKFESYDADSGTYVFIVNH 1108
>sp|Q7XZF7|GYRA_ORYSJ Probable DNA gyrase subunit A, chloroplastic/mitochondrial OS=Oryza
sativa subsp. japonica GN=GYRA PE=2 SV=2
Length = 939
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 29/173 (16%)
Query: 597 GDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIH----- 651
GD L L SQ G V+ + L L K E D++ +++ H
Sbjct: 734 GDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEGDKMASMDIIPATSHNMPET 793
Query: 652 -SSLNDVTIDWKRFL---GL------------------LMWYQLPPETSLAIVFQTYQHL 689
S + D++ W F+ G+ L Y+LPP+ SLA VF L
Sbjct: 794 YSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNFNRVGLQGYKLPPDCSLAAVFVVGFSL 853
Query: 690 LDDGKAPLPVPIYVDEGPID--EPIDWSGNERNDLSYYLMLLHASGESKFGSL 740
DDG++ V + G ++ + D S R+ LM L +G+ + SL
Sbjct: 854 TDDGESDEQVVLVSQSGTVNRIKVKDISIRSRSARGVILMRLEHAGKIQSASL 906
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376,215,169
Number of Sequences: 539616
Number of extensions: 17126672
Number of successful extensions: 41499
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 41441
Number of HSP's gapped (non-prelim): 27
length of query: 955
length of database: 191,569,459
effective HSP length: 127
effective length of query: 828
effective length of database: 123,038,227
effective search space: 101875651956
effective search space used: 101875651956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)