Query 002180
Match_columns 955
No_of_seqs 166 out of 371
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 15:47:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bg1_B Nucleoporin NUP145; NPC 100.0 1.4E-73 4.6E-78 654.9 28.0 316 492-864 118-442 (442)
2 3jro_A Fusion protein of prote 100.0 5.7E-63 1.9E-67 610.7 23.5 318 492-866 427-753 (753)
3 2q5x_A Nuclear pore complex pr 100.0 4.7E-53 1.6E-57 416.5 14.1 144 43-191 3-155 (155)
4 1ko6_A Nuclear pore complex pr 100.0 1.1E-47 3.6E-52 387.4 16.0 143 37-184 36-187 (187)
5 3nf5_A Nucleoporin NUP116; nuc 100.0 8.6E-48 2.9E-52 379.3 14.9 134 43-185 10-156 (164)
6 3pbp_B Nucleoporin NUP116/NSP1 100.0 4.4E-47 1.5E-51 370.3 16.1 134 46-185 2-145 (148)
7 3kep_A Nucleoporin NUP145; nuc 100.0 3.1E-47 1.1E-51 378.7 14.9 141 39-185 12-167 (174)
8 3f3f_C Nucleoporin NUP85; stru 96.9 0.014 4.9E-07 68.2 16.3 290 547-878 206-567 (570)
9 3mzk_B Protein transport prote 93.3 0.061 2.1E-06 61.7 5.1 102 572-675 152-266 (441)
10 2pm7_A Protein WEB1, protein t 93.0 0.18 6.3E-06 57.1 8.3 96 572-673 145-241 (399)
11 1ko6_B Nuclear pore complex pr 89.0 0.098 3.4E-06 43.1 0.7 13 185-197 1-13 (64)
12 3iko_C Nucleoporin NUP84; NPC, 77.9 6.4 0.00022 45.3 9.6 221 573-806 180-438 (460)
13 2qx5_A Nucleoporin NIC96; mRNA 42.1 25 0.00087 42.2 5.8 279 572-891 154-487 (661)
14 2ffg_A YKUJ; structural genomi 34.3 35 0.0012 29.8 3.8 43 149-191 4-66 (87)
15 1xi4_A Clathrin heavy chain; a 22.3 3.9E+02 0.014 35.1 11.9 87 782-881 1053-1139(1630)
No 1
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B
Probab=100.00 E-value=1.4e-73 Score=654.91 Aligned_cols=316 Identities=20% Similarity=0.323 Sum_probs=274.9
Q ss_pred hhHHHHHHHHHHhcCCccCCCCCCCCCCCchhhhhhhccCCCCccccccchhHHHHHHHHHHHHHhhhhhhhhccccccc
Q 002180 492 MHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDES 571 (955)
Q Consensus 492 ~~e~~VW~L~saLFd~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~RR~~Ls~WL~~~V~~~v~~ei~~~~~~ 571 (955)
.++.+||+||+||||+.+.+. +.+.+. +..++..+.||++|++||++.+++.+.+++. .++
T Consensus 118 ~~e~~vW~L~saLf~~~~~~~-----~~~~~~------------~~~~~~~~~Rr~~l~~WL~~~~~~~v~~~~~--~~~ 178 (442)
T 3bg1_B 118 SSDYNLWKLSSILFDPVSYPY-----KTDNDQ------------VKMALLKKERHCRLTSWIVSQIGPEIEEKIR--NSS 178 (442)
T ss_dssp SHHHHHHHHHHHHTSCCCCSS-----CCSCHH------------HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH--TCS
T ss_pred hHHhHHHHHHHHhcCCCcCcc-----cccchh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC
Confidence 588999999999999865321 111111 1124556889999999999999998888773 356
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHcCCCchhhhhhhcCCCchhHHHH-HHHHHHHHHcCCCcccChHHHHHHHHHhhCCc
Q 002180 572 NYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDI-AHQLDLWRVNGLDFKFIEKDRIRLYELLAGHI 650 (955)
Q Consensus 572 ~~~e~if~lL~g~~V~~Ac~~Ai~s~n~rLAtLlsq~gs~~~~r~~l-~~QL~~W~~~~~d~~~i~~~~~kIY~LLAG~~ 650 (955)
+++|+||.+||||+|++||++|+++||+|||+||||+||++.+|++| ++||+.|++. + .+|+++++|||+||||++
T Consensus 179 ~~~e~i~~~L~~~~v~eA~~~Ai~~~d~rLA~Llsq~g~~~~~r~~la~~QL~~W~~~--~-~~I~~~~~kiY~LLAG~~ 255 (442)
T 3bg1_B 179 NEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTG--G-CSIDKNISKIYKLLSGSP 255 (442)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHTSCCHHHHHHHHHHHHHTTSS--C-CCSCHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHCCCcHHHHHHHHhcCCchHHHHHHHHHHHHHHHh--C-ccCCHHHHHHHHHhcCCc
Confidence 88999999999999999999999999999999999999999999999 9999999988 4 599999999999999998
Q ss_pred cccc----C-CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCCCCCCCCChhHH
Q 002180 651 HSSL----N-DVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYY 725 (955)
Q Consensus 651 ~~~~----~-~~~LdW~rafgL~LWYg~~~~~~i~~ai~~y~~~~~~~~~~~P~P~y~~~~~~~~~~~~~~~~~~D~~~~ 725 (955)
.... . ..+|||+|+||||||||+++++||++||..|++++. +| .+|++|+
T Consensus 256 ~e~~~~~~~i~~~LdW~ralgl~LWY~~~~~~si~~av~~f~~~~~-----~P--------------------~~D~~~~ 310 (442)
T 3bg1_B 256 FEGLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFS-----LP--------------------YDDPIGV 310 (442)
T ss_dssp TTSTTCSGGGGGTSCHHHHHHHHHHTCCCSSCCHHHHHHHHHHHSC-----CC--------------------TTCHHHH
T ss_pred ccccccchhcccCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcc-----CC--------------------CCCHHHH
Confidence 5331 1 358999999999999999999999999999998765 22 3699999
Q ss_pred HHhhcccCCCcccchhhhhcccCCCCCCCCcchhHHHHHHHHhcCCCC--CchhhHHHHHHHHHHHhCCCchhHHHHHhc
Q 002180 726 LMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVIS--SNDLQILDMGLVSQLLCQGKCHWAIYVVLH 803 (955)
Q Consensus 726 LLkL~~~~~~~~~~l~~~l~p~~~s~~~lD~rLsW~l~~iL~a~g~~~--~~~~~~Lt~~fA~QLe~~glw~wAifVllH 803 (955)
||||||++ .+++.+|+|.+++++||||||+|||+++|+++|+.. ....++||++||+|||+.|+|+|||||+||
T Consensus 311 LLkLya~~----~~le~~L~p~s~s~~~lD~rLsW~L~~~L~a~g~~~~~~~~~d~L~~~fA~QLe~~Glw~wAifVllH 386 (442)
T 3bg1_B 311 IFQLYAAN----ENTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCF 386 (442)
T ss_dssp HHHHHHSC----TTHHHHHHHHHTTCCCSCHHHHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHccC----CCHHHHhChhccCCCcccchhHHHHHHHHHhCCCcccChhHHHHHHHHHHHHHHHCCCcHHHHHHHhh
Confidence 99999987 268999999999999999999999999999999844 346799999999999999999999999999
Q ss_pred ccCCCCchHHHHHHHHHHHHhhcccCCChhHHHHHHH-HhCCCHHHHHHHHHHHHHhcCCHH
Q 002180 804 MPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIE-ALGVPSEWLHEAMAVYYNYYGELS 864 (955)
Q Consensus 804 l~d~~~~~~~R~~~vr~lL~r~~~~~~~~~~~~~fL~-~L~IP~~WI~eAkAl~a~~~~d~~ 864 (955)
|+|+. .|+++||++|.|||+.+.+ + .+.||. +|+||++|||||||+||+|+||++
T Consensus 387 l~d~~----~Re~avr~lL~R~~~~~~~-~-~~~fL~~~L~IP~~WI~eAkAl~a~~~gd~~ 442 (442)
T 3bg1_B 387 LNDDK----AAEDTIKRLVMREITLLRA-S-TNDHILNRLKIPSQLIFNAQALKDRYEGNYL 442 (442)
T ss_dssp CCCHH----HHHHHHHHHHHHSTGGGST-T-TTSCHHHHTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCChH----HHHHHHHHHHHhhcccccc-H-HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCC
Confidence 98754 5999999999999987754 2 366775 999999999999999999999974
No 2
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-63 Score=610.70 Aligned_cols=318 Identities=19% Similarity=0.295 Sum_probs=270.0
Q ss_pred hhHHHHHHHHHHhcCCccCCCCCCCCCCCchhhhhhhccCCCCccccccchhHHHHHHHHHHHHHhhhhhhhhccccccc
Q 002180 492 MHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDES 571 (955)
Q Consensus 492 ~~e~~VW~L~saLFd~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~RR~~Ls~WL~~~V~~~v~~ei~~~~~~ 571 (955)
.+|+.||+||+||||+.++... ..+ ..+..++....||+.|++||++.+.+.++.++.. ..
T Consensus 427 ~~e~~~w~L~~~Lf~~~~~~~~----~~~-------------~~~~~~~~~~~r~~~~~~wl~~~~~~~~~~~~~~--~~ 487 (753)
T 3jro_A 427 SSDYNLWKLSSILFDPVSYPYK----TDN-------------DQVKMALLKKERHCRLTSWIVSQIGPEIEEKIRN--SS 487 (753)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSC----CSS-------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS--CS
T ss_pred chHHHHHHHHHHHcCCCcCCcc----ccc-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--cC
Confidence 4789999999999998764321 111 1111233457899999999999999888887753 23
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHcCCCchhhhhhhcCCC-chhHHHHHHHHHHHHHcCCCcccChHHHHHHHHHhhCCc
Q 002180 572 NYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGS-TVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHI 650 (955)
Q Consensus 572 ~~~e~if~lL~g~~V~~Ac~~Ai~s~n~rLAtLlsq~gs~-~~~r~~l~~QL~~W~~~~~d~~~i~~~~~kIY~LLAG~~ 650 (955)
+++++||.+|++|+|++||++|+++||+|||+||+|+||+ ..+|.++++||+.|++.+. +|++.++|||+||||++
T Consensus 488 ~~~~~i~~~L~~~~i~~A~~~a~~~~~~~la~ll~~~~~~~~~~~~~~~~Ql~~W~~~~~---~i~~~~~~iy~llag~~ 564 (753)
T 3jro_A 488 NEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGGC---SIDKNISKIYKLLSGSP 564 (753)
T ss_dssp CTTHHHHHHTTTTCHHHHHHHHHHTTCCHHHHHGGGCSSCCHHHHHHHHHHHHHHHTTTC---CCCHHHHHHHHTSSSCC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCc
Confidence 5699999999999999999999999999999999999997 6689999999999999883 89999999999999997
Q ss_pred ccccC-----CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCCCCCCCCChhHH
Q 002180 651 HSSLN-----DVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYY 725 (955)
Q Consensus 651 ~~~~~-----~~~LdW~rafgL~LWYg~~~~~~i~~ai~~y~~~~~~~~~~~P~P~y~~~~~~~~~~~~~~~~~~D~~~~ 725 (955)
..... ..+|||+|+||||||||++++.+|+++|..|++++. .+..|++|+
T Consensus 565 ~~~~~~~~~~~~~l~W~~~l~~~lwy~~~~~~~~~~~~~~~~~~~~-------------------------~~~~d~~~~ 619 (753)
T 3jro_A 565 FEGLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFS-------------------------LPYDDPIGV 619 (753)
T ss_dssp SSSTTCCGGGGTTSCHHHHHHHHHHTSCTTTSCHHHHHHHHHTTCC-------------------------CCTTCHHHH
T ss_pred cccccchhhccCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHhccC-------------------------CCccCHHHH
Confidence 65321 248999999999999999999999999999975432 124699999
Q ss_pred HHhhcccCCCcccchhhhhcccCCCCCCCCcchhHHHHHHHHhcCCCCC--chhhHHHHHHHHHHHhCCCchhHHHHHhc
Q 002180 726 LMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISS--NDLQILDMGLVSQLLCQGKCHWAIYVVLH 803 (955)
Q Consensus 726 LLkL~~~~~~~~~~l~~~l~p~~~s~~~lD~rLsW~l~~iL~a~g~~~~--~~~~~Lt~~fA~QLe~~glw~wAifVllH 803 (955)
|||||+.. .+++.+|.|++++++||||||+|||+++|+++|+.+. ...++||++||+|||+.|+|+||||||||
T Consensus 620 ll~l~~~~----~~~~~~l~~~~~~~~~ld~~l~w~l~~~l~~~~~~~~~~~~~~~l~~~~a~qL~~~g~~~~a~fv~~h 695 (753)
T 3jro_A 620 IFQLYAAN----ENTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCF 695 (753)
T ss_dssp HHHHHHCS----TTHHHHHHHHHTTCTTSCHHHHHHHHHHTTTTTCSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHhcCC----CCHHHhhccccCCCCCCccccHHHHHHHHHhcCCCccChhhHHHHHHHHHHHHHhCCCchhHHHHhhh
Confidence 99999943 2689999999999999999999999999999998654 34689999999999999999999999999
Q ss_pred ccCCCCchHHHHHHHHHHHHhhcccCCChhHHHHHHH-HhCCCHHHHHHHHHHHHHhcCCHHHH
Q 002180 804 MPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIE-ALGVPSEWLHEAMAVYYNYYGELSKA 866 (955)
Q Consensus 804 l~d~~~~~~~R~~~vr~lL~r~~~~~~~~~~~~~fL~-~L~IP~~WI~eAkAl~a~~~~d~~~e 866 (955)
|+|+. .|+++||++|.|||+.+.+++ ..||. +|+||++|||||||+||+|+||++.|
T Consensus 696 ~~~~~----~r~~~i~~~l~r~~~~~~~~~--~~~l~~~l~ip~~wi~~a~a~~~~~~~~~~~e 753 (753)
T 3jro_A 696 LNDDK----AAEDTIKRLVMREITLLRAST--NDHILNRLKIPSQLIFNAQALKDRYEGNYLSE 753 (753)
T ss_dssp CSCHH----HHHHHHHHHHHHSCTTSSTTT--TTTTTTTTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred CCChH----HHHHHHHHHHHhhhhhcCcch--hhhHHhccCCCHHHHHHHHHHHHHhcCCcccC
Confidence 98754 599999999999998775433 35676 99999999999999999999999876
No 3
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A 3tkn_C
Probab=100.00 E-value=4.7e-53 Score=416.49 Aligned_cols=144 Identities=40% Similarity=0.699 Sum_probs=128.8
Q ss_pred cccCCCeeecCCHHHHhccccCCCCCccccCCcEEeccceEEEEeccccccCCCCccceEEEeccEEEEecCCCCCCCCC
Q 002180 43 VLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYEDESSKPEVG 122 (955)
Q Consensus 43 ~l~~~~Y~~~Ps~~~L~~~~~~~~~~l~~v~~f~vgr~g~G~i~f~~~vdl~~~~ld~iV~~~~~~v~vYp~~~~kPp~G 122 (955)
+|+++||||+||++||++|+..+ ++++|+||||||+|||+|+|++||||+++|||+||.|++++|+||||++.|||+|
T Consensus 3 ~l~~~~Y~~~PsieeL~~~~~~~--~~~~V~~FtVgR~gyG~I~f~~pvDl~~ldLd~IV~~~~~~v~VYpd~~~KPpvG 80 (155)
T 2q5x_A 3 ILTKVGYYTIPSMDDLAKITNEK--GECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVG 80 (155)
T ss_dssp BCCSTTEEEESCHHHHHHHSCTT--SCCEEEEEEEEETTTEEEEEEEEEECTTCBHHHHEEEETTEEEECC----CCCTT
T ss_pred EEeCCCeEEcCCHHHHHhhhhhc--cccEECCEEEEeeeEEEEEeCcceeeccCCcccEEEEccCEEEEeCCCCCCCCCC
Confidence 68999999999999999997543 2459999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccEEEEEecccccccCCCCCCC----hHH-----HHHHHHHHhhhcCCEEEEEecCCcEEEEEECCcccccCCC
Q 002180 123 QGLNKAAEVTLFLQGRYLSLKLKEGD----SDD-----FVKKMKERTERQGARFVSFDPVSGEWKFLVVHFSRFGLSD 191 (955)
Q Consensus 123 ~gLN~~a~itl~~~~~~~~~~~~~~~----~~~-----~~~~l~~~~~~~~~~fv~y~~~tg~w~F~V~HFskYGL~D 191 (955)
+||||||+|||+ + |||.++++++ +++ |.++|+++|+++||+||+|||+||+|+|+|+|||+|||+|
T Consensus 81 ~GLN~~A~ITL~-~--~~P~~k~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~FvsYd~~tG~W~F~V~HFS~ygl~d 155 (155)
T 2q5x_A 81 EGLNRKAEVTLD-G--VWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFAKYGLQD 155 (155)
T ss_dssp BTTBSCEEEEEC-S--CCCBCTTTCCBCCCHHHHHHTTHHHHHHHHHHHTTCEEEEEETTTTEEEEEESSCSCEECCC
T ss_pred CCcCcCEEEEEe-e--eEecCCCcCccccCcchhhhHHHHHHHHHHhhcCCCEEEEEeCCCcEEEEEeCCccccccCC
Confidence 999999999994 4 5558888764 333 8999999999999999999999999999999999999987
No 4
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=100.00 E-value=1.1e-47 Score=387.42 Aligned_cols=143 Identities=38% Similarity=0.629 Sum_probs=130.1
Q ss_pred CCCCCCcccCCCeeecCCHHHHhccccCCCCCccccCCcEEeccceEEEEeccccccCCCCccceEEEeccEEEEecCCC
Q 002180 37 NGDSLPVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYEDES 116 (955)
Q Consensus 37 ~~~~~p~l~~~~Y~~~Ps~~~L~~~~~~~~~~l~~v~~f~vgr~g~G~i~f~~~vdl~~~~ld~iV~~~~~~v~vYp~~~ 116 (955)
+.+..|+|+++||||+||++||++|+..+ +|++|+||||||+|||+|+|++||||+++|||+||.|++++|+||||+.
T Consensus 36 ~~p~g~~L~~~~Y~~~PSieeL~~~~~~~--~l~~V~~FtVGR~gyG~I~f~~pVDL~~ldLd~IV~f~~k~v~VYpd~~ 113 (187)
T 1ko6_A 36 MHPAGIILTKVGYYTIPSMDDLAKITNEK--GECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDN 113 (187)
T ss_dssp CCSSCCBCCSTTEEEESCHHHHHHHSCTT--SCCEESSEEEEETTTEEEEECSCEECTTCBHHHHEEEETTEEEESSSTT
T ss_pred cCCCCceecCCCeeECCCHHHHHhhcchh--hhceecceEEEeeeEEEEEeCCceeeccCCcceEEEeccCEEEEeCCCC
Confidence 45567899999999999999999997543 3679999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccEEEEEecccccccCCCCCCC----hH-----HHHHHHHHHhhhcCCEEEEEecCCcEEEEEECCc
Q 002180 117 SKPEVGQGLNKAAEVTLFLQGRYLSLKLKEGD----SD-----DFVKKMKERTERQGARFVSFDPVSGEWKFLVVHF 184 (955)
Q Consensus 117 ~kPp~G~gLN~~a~itl~~~~~~~~~~~~~~~----~~-----~~~~~l~~~~~~~~~~fv~y~~~tg~w~F~V~HF 184 (955)
.|||+|+||||||+|||+ + |||.+|+++. ++ +|.++|+++|+++||+||+|||+||+|+|+|+||
T Consensus 114 ~KPpvG~GLN~pA~ITL~-~--~~P~dk~~~~~i~d~~~~~~~~~~~~l~r~~~~~ga~FvsYd~~tG~W~F~V~HF 187 (187)
T 1ko6_A 114 QKPPVGEGLNRKAEVTLD-G--VWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHF 187 (187)
T ss_dssp SCCCTTSTTSSCEEEEEC-S--CCCCCTTTCSCCCCHHHHHHHTHHHHHHHHHHHTTCEEEEEEGGGTEEEEEESCC
T ss_pred CCCCCCCCcCcCEEEEEe-e--eEecCCCCCccccCcchhhHHHHHHHHHHHHhcCCCEEEEEeCCCcEEEEEeccC
Confidence 999999999999999994 4 5558887764 22 4899999999999999999999999999999999
No 5
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata}
Probab=100.00 E-value=8.6e-48 Score=379.31 Aligned_cols=134 Identities=27% Similarity=0.519 Sum_probs=123.6
Q ss_pred cccCCCeeecCCHHHHhccccCCCCCccccCCcEEeccceEEEEeccccccCCCCccc----eEEEeccEEEEecCCCCC
Q 002180 43 VLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQ----IVKFGRHEIVVYEDESSK 118 (955)
Q Consensus 43 ~l~~~~Y~~~Ps~~~L~~~~~~~~~~l~~v~~f~vgr~g~G~i~f~~~vdl~~~~ld~----iV~~~~~~v~vYp~~~~k 118 (955)
+|+++||||+||+++|++|+..| |++|+||||||+|||+|+|++||||+++|||+ ||.|++++|+||||++.|
T Consensus 10 ~lt~~~Y~~~PSleeL~~m~~~~---l~~V~nFtVGR~gyG~I~F~~pVDL~~ldLd~i~g~iV~f~~k~v~VYpd~~~K 86 (164)
T 3nf5_A 10 EFVDENYYISPSLDTLATLSKYE---IQKVENLVVGNKQYGKIEFLDPVDLSDIPLGSICDDLVVFQPMSVLLYNNSTNV 86 (164)
T ss_dssp CCCCCSEEEESCHHHHHHCCHHH---HTSBCSCEEEETTTEEEEESSCBCCTTCCGGGTBTTTEEEETTEEEESTTCSCC
T ss_pred EEecCCEEEcCCHHHHHhcCHHH---hCcCCCeEEeeceEEEEEeCCceeccccChhHhcCCEEEEecCEEEEeCCcCCC
Confidence 78999999999999999999766 99999999999999999999999999999998 999999999999999999
Q ss_pred CCCCCCCcccEEEEEecccccccCCCCCCC---------hHHHHHHHHHHhhhcCCEEEEEecCCcEEEEEECCcc
Q 002180 119 PEVGQGLNKAAEVTLFLQGRYLSLKLKEGD---------SDDFVKKMKERTERQGARFVSFDPVSGEWKFLVVHFS 185 (955)
Q Consensus 119 Pp~G~gLN~~a~itl~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~fv~y~~~tg~w~F~V~HFs 185 (955)
||+|+||||||+|||+ + |||.+|+++. +++|++||++ ++||+|++|||+||+|||+|+||-
T Consensus 87 PpvG~GLNvpA~ITL~-~--~~P~dk~t~~pi~d~~~~~~~~~i~rLk~---~~g~~FvsYd~~tG~W~F~V~H~~ 156 (164)
T 3nf5_A 87 PEKGKGLNVRARISCY-N--CYPLDKSTRKPIKDPNHRIMERYSEKLKK---IPHTHFESYDPASGTYCFTVDHAL 156 (164)
T ss_dssp CCTTSTTCSCEEEEEC-S--CCCBCTTTCCBCCCTTSTHHHHHHHHHHH---CTTCEEEEEETTTTEEEEEESSTT
T ss_pred CCCCCCcCcCEEEEEe-e--eEcCCCCCCccccCcchHHHHHHHHHHhc---cCCCEEEEEeCCCcEEEEEEcccc
Confidence 9999999999999994 4 5668887754 4677777777 599999999999999999999995
No 6
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A
Probab=100.00 E-value=4.4e-47 Score=370.30 Aligned_cols=134 Identities=25% Similarity=0.528 Sum_probs=120.8
Q ss_pred CCCeeecCCHHHHhccccCCCCCccccCCcEEeccceEEEEeccccccCCCCccc----eEEEeccEEEEecCCCCCCCC
Q 002180 46 SPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQ----IVKFGRHEIVVYEDESSKPEV 121 (955)
Q Consensus 46 ~~~Y~~~Ps~~~L~~~~~~~~~~l~~v~~f~vgr~g~G~i~f~~~vdl~~~~ld~----iV~~~~~~v~vYp~~~~kPp~ 121 (955)
++||||+||+++|++|+..| |++|+||+|||+|||+|+|++||||+++|||+ ||.|++++|+||||++.|||+
T Consensus 2 ~~~Y~~~PsleeL~~m~~~~---l~~V~~F~VGR~gyG~I~f~~pVDL~~l~Ld~i~g~iV~f~~~~v~VYpd~~~KPp~ 78 (148)
T 3pbp_B 2 NENYYISPSLDTLSSYSLLQ---LRKVPHLVVGHKSYGKIEFLEPVDLAGIPLTSLGGVIITFEPKTCIIYANLPNRPKR 78 (148)
T ss_dssp CTTEEEESCHHHHHHSCSST---TSSBCSCEEEETTTEEEEESSCBCCTTSCTTHHHHTSEEEETTEEEESCSSCCCCCT
T ss_pred CCCeEEcCCHHHHHhcCHHH---hccCCCeEEEeccEEEEEeCCceeccccChhhhcCCEEEEecCEEEEeCCccCCCCC
Confidence 67999999999999999766 99999999999999999999999999999998 999999999999999999999
Q ss_pred CCCCcccEEEEEecccccccCCCCCCCh------HHHHHHHHHHhhhcCCEEEEEecCCcEEEEEECCcc
Q 002180 122 GQGLNKAAEVTLFLQGRYLSLKLKEGDS------DDFVKKMKERTERQGARFVSFDPVSGEWKFLVVHFS 185 (955)
Q Consensus 122 G~gLN~~a~itl~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~fv~y~~~tg~w~F~V~HFs 185 (955)
|+||||||+|||+ + |||.+|+++++ ..+.++++++++++||+|++|||+||+|+|+|+||.
T Consensus 79 G~GLN~pA~ITL~-~--~~P~dk~t~~~i~d~~~~~~~~~i~rlk~~~g~~FvsYd~~tG~W~F~V~Hf~ 145 (148)
T 3pbp_B 79 GEGINVRARITCF-N--CYPVDKSTRKPIKDPNHQLVKRHIERLKKNPNSKFESYDADSGTYVFIVNHAA 145 (148)
T ss_dssp TSTTCSCEEEEES-C--CCCBCTTTCCBCCCTTSHHHHHHHHHHTSCSSSEEEEECTTTCCEEEEESCSC
T ss_pred CCCcCcCEEEEEe-e--eEcCCCCCcccccCcchHHHHHHHHHHhhcCCCEEEEEeCCCcEEEEEeeeee
Confidence 9999999999994 4 55688877541 345555566666799999999999999999999996
No 7
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysi protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A*
Probab=100.00 E-value=3.1e-47 Score=378.73 Aligned_cols=141 Identities=28% Similarity=0.505 Sum_probs=114.1
Q ss_pred CCCCcccCCCeeecCCHHHHhccccCCCCCccccCCcEEeccceEEEEeccccccCCC--Ccc-----ceEEEe-ccEEE
Q 002180 39 DSLPVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWL--DLD-----QIVKFG-RHEIV 110 (955)
Q Consensus 39 ~~~p~l~~~~Y~~~Ps~~~L~~~~~~~~~~l~~v~~f~vgr~g~G~i~f~~~vdl~~~--~ld-----~iV~~~-~~~v~ 110 (955)
...|+|+++||||+||+++|++|+..+ |++|+||+|||+|||+|+|++||||+++ ||| +||.|+ +++|+
T Consensus 12 ~~~~kl~~~gY~~~PSleeL~~ms~~~---L~~V~nFtVGR~gyG~I~F~~pVDLs~l~~DLd~~l~g~IV~f~~~~~v~ 88 (174)
T 3kep_A 12 LQHEKSSSFGYWCSPSPEQLERLSLKQ---LAAVSNFVIGRRGYGCITFQHDVDLTAFTKSFREELFGKIVIFRSSKTVE 88 (174)
T ss_dssp --------CCEEEESCHHHHHTSCTTG---GGSBSSCEEEETTTEEEEESSCBCCGGGTTCHHHHHBTTTEEEETTTEEE
T ss_pred eecceeCCCCEEEcCCHHHHHhcCHHH---hcccCCeEEeeceEEEEEeCCcEEhhhcccchhhhcCCcEEEECCCCEEE
Confidence 357999999999999999999999755 9999999999999999999999999999 898 599999 99999
Q ss_pred EecCCCCCCCCCCCCcccEEEEEecccccccCCCCCCCh-------HHHHHHHHHHhhhcCCEEEEEecCCcEEEEEECC
Q 002180 111 VYEDESSKPEVGQGLNKAAEVTLFLQGRYLSLKLKEGDS-------DDFVKKMKERTERQGARFVSFDPVSGEWKFLVVH 183 (955)
Q Consensus 111 vYp~~~~kPp~G~gLN~~a~itl~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~fv~y~~~tg~w~F~V~H 183 (955)
||||++.|||+|+||||||+|||+ + |||.+|+++++ ..+.+.++++++++||+||+|||+||+|||+|+|
T Consensus 89 VYpd~~~KPpvG~GLNvpA~ITL~-~--~~P~dk~t~~pi~d~~~l~~~~~~i~rLk~~~g~~FisYd~~tG~W~F~V~H 165 (174)
T 3kep_A 89 VYPDEATKPMIGHGLNVPAIITLE-N--VYPVDKKTKKPMKDTTKFAEFQVFDRKLRSMREMNYISYNPFGGTWTFKVNH 165 (174)
T ss_dssp ECCSTTTCCCTTSTTCSCEEEEES-S--CCCC----CCCCCCTTCHHHHHHHHHHHHHCSSSEEEEEETTTTEEEEEESC
T ss_pred EeCCCCCCCCCCCCcCcCEEEEEe-e--eEeCCCCCCccccCchhhHHHHHHHHHHhhcCCCEEEEEeCCCcEEEEEEec
Confidence 999999999999999999999994 4 55588876541 3344444444446999999999999999999999
Q ss_pred cc
Q 002180 184 FS 185 (955)
Q Consensus 184 Fs 185 (955)
|-
T Consensus 166 ~~ 167 (174)
T 3kep_A 166 FE 167 (174)
T ss_dssp CC
T ss_pred cc
Confidence 95
No 8
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=96.87 E-value=0.014 Score=68.22 Aligned_cols=290 Identities=12% Similarity=0.088 Sum_probs=144.6
Q ss_pred HHHHHHHHHHhhhhhhh---hcccc------c----cccHHHHHHHHHhcCCHHHHHHHHHHcCC--------Cchh---
Q 002180 547 AEFSCWLKESVCHRVQE---DVSSL------D----ESNYLKHIFLLLTGRQLDSSVELAASRGD--------VRLA--- 602 (955)
Q Consensus 547 ~~Ls~WL~~~V~~~v~~---ei~~~------~----~~~~~e~if~lL~g~~V~~Ac~~Ai~s~n--------~rLA--- 602 (955)
+.|-+|+...-..-..+ +|... . ...+..-|..++..|..++|+.+...++. ..+.
T Consensus 206 e~Ll~WVN~~d~eP~~E~~~eVm~~~~~~~~~~P~eHp~FW~~v~~LvLRGl~~qA~~~L~~s~~~~~L~~~~~~~~~~i 285 (570)
T 3f3f_C 206 ESLLNWINRSDGEPDEEYIEQVFSVKDSTAGKKVFETQYFWKLLNQLVLRGLLSQAIGCIERSDLLPYLSDTCAVSFDAV 285 (570)
T ss_dssp HHHHHHHHHHCCCSCHHHHHHHTTC----CCSSSSCSHHHHHHHHHHHHTTCHHHHHHHHTTTTTTHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHhcccccCCCCCCCCccHHHHHHHHHHcccHHHHHHHHHhcccchhhcccChHHHHHH
Confidence 68889998765322111 22111 1 12346678899999999999999987765 2211
Q ss_pred -hhhhhcCCCchhHHHHHHHHHHHHHcC---------CCcc---cChHHHHHHHHHhhCCcccccCCCCCCHHHHHHHHh
Q 002180 603 -CLLSQAGGSTVSRSDIAHQLDLWRVNG---------LDFK---FIEKDRIRLYELLAGHIHSSLNDVTIDWKRFLGLLM 669 (955)
Q Consensus 603 -tLlsq~gs~~~~r~~l~~QL~~W~~~~---------~d~~---~i~~~~~kIY~LLAG~~~~~~~~~~LdW~rafgL~L 669 (955)
.++..+.+-+... ..|...|+..- ...+ -+-+...-||+||+|+....++-.. +|..+|+-.+
T Consensus 286 ~dli~LL~~yP~~S---~~~fr~WK~~~~e~r~~l~~~~~~i~~ei~~~Ledll~Il~Gd~~~Il~~~~-tWYEal~all 361 (570)
T 3f3f_C 286 SDSIELLKQYPKDS---SSTFREWKNLVLKLSQAFGSSATDISGELRDYIEDFLLVIGGNQRKILQYSR-TWYESFCGFL 361 (570)
T ss_dssp HHHHHHHTTCCSSC---HHHHHHHHHHHHHHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCHHHHHHTCS-SHHHHHHHHH
T ss_pred HHHHHHHHhCCCCc---hHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHcCCHHHHHHHcc-cHHHHHhHhe
Confidence 1333333322221 33555665332 1111 0225567899999999754433222 8999999887
Q ss_pred hccCCCCCCHHHHHHHH-HHHhcCCCCCCCCCccccCCCCCCCCCCCCCCCCChhHHHHhhcccCCCcccchhhhhcccC
Q 002180 670 WYQLPPETSLAIVFQTY-QHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYYLMLLHASGESKFGSLKTMFNALS 748 (955)
Q Consensus 670 WYg~~~~~~i~~ai~~y-~~~~~~~~~~~P~P~y~~~~~~~~~~~~~~~~~~D~~~~LLkL~~~~~~~~~~l~~~l~p~~ 748 (955)
-|-.|....+ ..| +.++.+. +|-+. ....-+|..++. ..-. ..++.+
T Consensus 362 Ly~~Pt~k~~----~~y~q~al~~~---p~d~~---------------~~~E~~~~~i~e---gni~--~VL~~l----- 409 (570)
T 3f3f_C 362 LYYIPSLELS----AEYLQMSLEAN---VVDIT---------------NDWEQPCVDIIS---GKIH--SILPVM----- 409 (570)
T ss_dssp HHTCCCGGGH----HHHHHHHHHHS---CCCTT---------------SSSHHHHHHHHT---TCCG--GGHHHH-----
T ss_pred eeecCccccc----HHHHHHHHHhC---CCCcc---------------cHHHHHHHHHHc---cCHH--HHHHHH-----
Confidence 7766655333 233 3333321 11110 011123444442 2111 122221
Q ss_pred CCCCCCCcchhHHHHHHHHhcCCCCCc-------------------h--------hhHHHHHHHHHHHh---CCCchhHH
Q 002180 749 STYDPLDYHMIWHQREVLAAVGVISSN-------------------D--------LQILDMGLVSQLLC---QGKCHWAI 798 (955)
Q Consensus 749 ~s~~~lD~rLsW~l~~iL~a~g~~~~~-------------------~--------~~~Lt~~fA~QLe~---~glw~wAi 798 (955)
.-+|.-+++|+..++.+.|.+... + ..-|-..||.+|.. ..+|+-||
T Consensus 410 ---q~ld~~~AA~vAdLle~~GlLe~~~~~~~~~~~l~~~~~~~~d~l~s~~~~l~eyLL~~~a~~~~~~~~~sLW~vgI 486 (570)
T 3f3f_C 410 ---ESLDSCTAAFTAMICEAKGLIENIFEGEKNSDDYSNEDNEMLEDLFSYRNGMASYMLNSFAFELCSLGDKELWPVAI 486 (570)
T ss_dssp ---HHHCHHHHHHHHHHHHHHTSSCCCCCC--------------CCCSSSSSSCHHHHHHHHHHHHHHTSCCTTTHHHHH
T ss_pred ---HHhhHHHHHHHHHHHHHhCcccchhhhccccccccccccccHhhhhcCcchHHHHHHHHHHhhcccccCCcchhHHH
Confidence 135667889999999887765421 0 11255689998655 58999999
Q ss_pred HHHhcccCCCCchHHHHHHHHHHHHhhcccCCChhHHHH--HHHHhCCCHH--HHHHHHHHHHHhcCCHHHHHHHHHhCc
Q 002180 799 YVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRK--FIEALGVPSE--WLHEAMAVYYNYYGELSKALEHFLECA 874 (955)
Q Consensus 799 fVllHl~d~~~~~~~R~~~vr~lL~r~~~~~~~~~~~~~--fL~~L~IP~~--WI~eAkAl~a~~~~d~~~e~~~Ll~A~ 874 (955)
=++.|-+..+ ...=...|.++|. +.+.-+.++.++. +..+++.|.. =|++-.+.++.++|+...++.++.+||
T Consensus 487 ~yL~~~~~~~--~~~gr~~IselLp-r~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~geAL~~f~rA~ 563 (570)
T 3f3f_C 487 GLIALSATGT--RSAKKMVIAELLP-HYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNIIESIANFSRAG 563 (570)
T ss_dssp HHHHHCSSSC--HHHHHHHHHHHGG-GCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------
T ss_pred HHHhcCCccc--hhHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHHHHHHHHHHcC
Confidence 9999976432 1112345666665 4443333333332 2239999863 344444556667888888999999999
Q ss_pred CHHH
Q 002180 875 NWQK 878 (955)
Q Consensus 875 ~~~e 878 (955)
.+..
T Consensus 564 ~~~~ 567 (570)
T 3f3f_C 564 KYEL 567 (570)
T ss_dssp ----
T ss_pred Chhh
Confidence 8864
No 9
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=93.33 E-value=0.061 Score=61.68 Aligned_cols=102 Identities=16% Similarity=0.201 Sum_probs=69.3
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHcCCCchhhhhhhcCCCchhHHHHHHHHHHHHHcC---CCcccChHHHHHHHHHhhC
Q 002180 572 NYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNG---LDFKFIEKDRIRLYELLAG 648 (955)
Q Consensus 572 ~~~e~if~lL~g~~V~~Ac~~Ai~s~n~rLAtLlsq~gs~~~~r~~l~~QL~~W~~~~---~d~~~i~~~~~kIY~LLAG 648 (955)
...++|-.+|..|+.++|++.|++.+..-.|++||..++.+..++-++ +.-. ++.+ ...+.+.....-||++++|
T Consensus 152 ~~~~~I~~~Ll~G~~e~Av~~al~~~lwa~ALlLAs~~g~e~~~~V~~-~y~~-~~~~~~~~~~~~~~~~Lr~Ly~v~sG 229 (441)
T 3mzk_B 152 NCQMRVLAFLQTGNHDEALRLALSKRDYAIALLVGSLMGKDRWSEVIQ-KYLY-EGFTAGPNDQKELAHFLLLIFQVFVG 229 (441)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHH-HHHH-CC------CTHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCcHHHHHHHHHhcCHHHHHHHHH-HHHH-hhcccCCccccccccHHHHHHHHHcC
Confidence 347889999999999999999999999999999999888654333222 2111 1111 0001122334579999999
Q ss_pred CcccccCCC---------C-CCHHHHHHHHhhccCCC
Q 002180 649 HIHSSLNDV---------T-IDWKRFLGLLMWYQLPP 675 (955)
Q Consensus 649 ~~~~~~~~~---------~-LdW~rafgL~LWYg~~~ 675 (955)
++...+... + -+|+-.+++-|=|..+.
T Consensus 230 n~~~~V~~l~~~~~~~~~~l~~Wre~lA~IlsN~~~~ 266 (441)
T 3mzk_B 230 NSKMAIKSFYTNNETSQWASENWKSIVAAVLINIPEN 266 (441)
T ss_dssp CHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHTSCCC
T ss_pred CHHHHHHHhccCCccccchHhHHHHHHHHHHhCCCCc
Confidence 975433210 0 17999999999997653
No 10
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=92.98 E-value=0.18 Score=57.11 Aligned_cols=96 Identities=11% Similarity=0.128 Sum_probs=70.6
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHcCCCchhhhhhhcCCCchhHHHHHHHHHHHHHcCCCcccChHHHHHHHHHhhCCcc
Q 002180 572 NYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIH 651 (955)
Q Consensus 572 ~~~e~if~lL~g~~V~~Ac~~Ai~s~n~rLAtLlsq~gs~~~~r~~l~~QL~~W~~~~~d~~~i~~~~~kIY~LLAG~~~ 651 (955)
+..+.|-.+|..|++++|+++|++.+.+-=|+|||..||.+..++-.++. --++... -++..+-||.+.+|+..
T Consensus 145 ~~d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg~el~~~~vq~~--Y~~k~~~----~~~~~rll~~iv~~n~~ 218 (399)
T 2pm7_A 145 NIEQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERLKESVKNA--YFAKYGS----KSSLSRILYSISKREVD 218 (399)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTTCCCHHHHHHHHHH--HHHHHTT----SCHHHHHHHHHHTTCCH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHHHHHHH--HHHhccc----CchHHHHHHHHHccCHH
Confidence 44777888899999999999999999999999999999976542222221 2222221 12344469999999987
Q ss_pred cccCCCCC-CHHHHHHHHhhccC
Q 002180 652 SSLNDVTI-DWKRFLGLLMWYQL 673 (955)
Q Consensus 652 ~~~~~~~L-dW~rafgL~LWYg~ 673 (955)
..+.+.+| +|+-+|++-+=|..
T Consensus 219 d~V~~~~l~~WkE~La~i~t~a~ 241 (399)
T 2pm7_A 219 DLVENLDVSQWKFISKAIQNLYP 241 (399)
T ss_dssp HHHHHBCGGGHHHHHHHHHHHCT
T ss_pred HHHhcCChhhHHHHHHHHHhcCC
Confidence 65443345 89999999999984
No 11
>1ko6_B Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=89.02 E-value=0.098 Score=43.12 Aligned_cols=13 Identities=38% Similarity=0.897 Sum_probs=11.2
Q ss_pred ccccCCCCccccc
Q 002180 185 SRFGLSDDEEDDI 197 (955)
Q Consensus 185 skYGL~Ddddee~ 197 (955)
|||||.|+||||+
T Consensus 1 SKYGL~DSDEEEe 13 (64)
T 1ko6_B 1 SKYGLQDSDEEEE 13 (64)
T ss_pred CCcCccccchhhh
Confidence 8999999988764
No 12
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=77.95 E-value=6.4 Score=45.30 Aligned_cols=221 Identities=18% Similarity=0.194 Sum_probs=112.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCCCchhhhhhhcCCC---ch-hHHHHH---------HHHHHHHHcCC----CcccC
Q 002180 573 YLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGS---TV-SRSDIA---------HQLDLWRVNGL----DFKFI 635 (955)
Q Consensus 573 ~~e~if~lL~g~~V~~Ac~~Ai~s~n~rLAtLlsq~gs~---~~-~r~~l~---------~QL~~W~~~~~----d~~~i 635 (955)
-++.||.+|-+|++++|.+++...|++=.|..|. |+. ++ +-..+. ..-..||..-- + .-+
T Consensus 180 l~~~i~~liR~G~~~eA~~lc~~~gq~WRAasL~--G~~~~~dP~~~~~~~~e~~~~~Gn~~r~LWkr~c~~lA~~-~~~ 256 (460)
T 3iko_C 180 FFKYIYELILAGAIDEALEEAKLSDNISICMILC--GIQEYLNPVIDTQIANEFNTQQGIKKHSLWRRTVYSLSQQ-AGL 256 (460)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHH--TTSBCBCTTTSGGGTTTCSSCBSBTTHHHHHHHHHHHHHC-SSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHc--ccccccCcccccccccccccccCchhHHHHHHHHHHHHhC-CCC
Confidence 3677999999999999999999999999999885 442 11 000000 12234553210 1 134
Q ss_pred hHHHHHHHHHhhCCcccccCC-CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHhcCC---CCCCCCCccccCCCCCC-
Q 002180 636 EKDRIRLYELLAGHIHSSLND-VTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDG---KAPLPVPIYVDEGPIDE- 710 (955)
Q Consensus 636 ~~~~~kIY~LLAG~~~~~~~~-~~LdW~rafgL~LWYg~~~~~~i~~ai~~y~~~~~~~---~~~~P~P~y~~~~~~~~- 710 (955)
++.-++||.+|||++...... .. +|--.|=+|+ .. =+..-|+.|-...... ....|+|.. ..+.+.
T Consensus 257 ~~yERAvY~~LsG~l~s~~~~~~~-sWeD~Lway~--n~----ll~~~vd~~l~~~~~~~~~~~~~~~P~~--~~tl~~i 327 (460)
T 3iko_C 257 DPYERAIYSYLSGAIPNQEVLQYS-DWESDLHIHL--NQ----ILQTEIENYLLENNQVGTDELILPLPSH--ALTVQEV 327 (460)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHTTC-CHHHHHHHHH--HH----HHHHHHHHHHHHTTCSCGGGCCSCCCCC--CCCHHHH
T ss_pred CHHHHHHHHHHhCCchhhcccCCC-CHHHHHHHHH--HH----HHHHHHHHHHHHhCCccccccccCCCCC--ccCHHHH
Confidence 455569999999998765321 23 8988765543 21 1222333333221100 011233321 000000
Q ss_pred ---CCCCCCCCCCChhHHHHhhcccCCCccc---chhhhhcccCC--------CCCCCCcchhHHHHHHHHhcCCC--CC
Q 002180 711 ---PIDWSGNERNDLSYYLMLLHASGESKFG---SLKTMFNALSS--------TYDPLDYHMIWHQREVLAAVGVI--SS 774 (955)
Q Consensus 711 ---~~~~~~~~~~D~~~~LLkL~~~~~~~~~---~l~~~l~p~~~--------s~~~lD~rLsW~l~~iL~a~g~~--~~ 774 (955)
+....+....+ -|+.++.+.-...-.. .+...|.+... ..+|-=.|+.=||+-+|+.+|.. ..
T Consensus 328 l~~L~~~~~~ea~~-p~r~iQ~~iIl~~~~~ll~~~~~~L~~~~~~~~~~~~~~~~~~~LRf~aHl~Lflr~l~~~~~~~ 406 (460)
T 3iko_C 328 LNRVASRHPSESEH-PIRVLMASVILDSLPSVIHSSVEMLLDVVKGTEASNDIIDKPYLLRIVTHLAICLDIINPGSVEE 406 (460)
T ss_dssp HHHHHHHSHHHHHS-TTHHHHHHHHSSCCHHHHHHHHHTCCC----------CTTSHHHHHHHHHHHHHHHHHSTTSSCH
T ss_pred HHHHHhcChHhhhC-hHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCccccccccCcchHHHHHHHHHHHHHhCccccCh
Confidence 00000000000 1122221111000000 11112222110 01222237788888889988862 33
Q ss_pred chhhHHHHHHHHHHHhCCCchhHHHHHhcccC
Q 002180 775 NDLQILDMGLVSQLLCQGKCHWAIYVVLHMPR 806 (955)
Q Consensus 775 ~~~~~Lt~~fA~QLe~~glw~wAifVllHl~d 806 (955)
...+.+-..|+..|...|+.+.-.|-..+|+.
T Consensus 407 ~~~~~II~~YI~~L~~~~~~eLIplY~S~L~~ 438 (460)
T 3iko_C 407 VDKSKLITTYISLLKLQGLYENIPIYATFLNE 438 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHHCCCcccHHHHHccCCH
Confidence 34567778999999999999987777888853
No 13
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=42.15 E-value=25 Score=42.19 Aligned_cols=279 Identities=11% Similarity=0.118 Sum_probs=131.4
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHcCCC------chhhhhhhcC-C-CchhHHHHHHHH-HHHHHc-CCCcccChHHHHH
Q 002180 572 NYLKHIFLLLTGRQLDSSVELAASRGDV------RLACLLSQAG-G-STVSRSDIAHQL-DLWRVN-GLDFKFIEKDRIR 641 (955)
Q Consensus 572 ~~~e~if~lL~g~~V~~Ac~~Ai~s~n~------rLAtLlsq~g-s-~~~~r~~l~~QL-~~W~~~-~~d~~~i~~~~~k 641 (955)
.....||.+|-+|++++|.+.|.++++. ..++++.-.- + +......++.+| ..|++. +. +.-+||.+.+
T Consensus 154 p~Wa~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~-~~~~DpyK~A 232 (661)
T 2qx5_A 154 PIWALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKS-SLDGDPYRLA 232 (661)
T ss_dssp EHHHHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC-------------------------------CHHHHH
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhC-CCCCCHHHHH
Confidence 4578899999999999999999999864 4455554433 2 222345666666 346652 11 1127999999
Q ss_pred HHHHhhCCc-c---c-ccC-CCCCCHHHHHHHHhhccCCCCCCHHH-----HHHHHHHHhcC-CCCCCCCCccccCCCCC
Q 002180 642 LYELLAGHI-H---S-SLN-DVTIDWKRFLGLLMWYQLPPETSLAI-----VFQTYQHLLDD-GKAPLPVPIYVDEGPID 709 (955)
Q Consensus 642 IY~LLAG~~-~---~-~~~-~~~LdW~rafgL~LWYg~~~~~~i~~-----ai~~y~~~~~~-~~~~~P~P~y~~~~~~~ 709 (955)
+|++|+|.= . . .+. +.+ ||+ =++|-.....+.+-+. .+..++..+.+ |.
T Consensus 233 vY~Iig~cD~~~~~~~~v~~siE-D~L---Wl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe--------------- 293 (661)
T 2qx5_A 233 VYKLIGRCDLSRKNIPAVTLSIE-DWL---WMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGP--------------- 293 (661)
T ss_dssp HHHHHHTCCGGGCCCGGGCCSHH-HHH---HHHHHTCCC----------CCCHHHHHHHHHHHCG---------------
T ss_pred HHHHHhcccccccchHHHhccHH-HHH---HHHHHhccCCCcccccccccccHHHHHHHHHHhhh---------------
Confidence 999998862 1 1 111 111 454 1111111111100000 13333333321 10
Q ss_pred CCCCCCCCCCCC-hhHHHHhhcccCCCcccchhhhhcccCCCCCCCCcchhHHHHHHHHhcCCCCCc-------------
Q 002180 710 EPIDWSGNERND-LSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISSN------------- 775 (955)
Q Consensus 710 ~~~~~~~~~~~D-~~~~LLkL~~~~~~~~~~l~~~l~p~~~s~~~lD~rLsW~l~~iL~a~g~~~~~------------- 775 (955)
..++ +.|.+| +.+. .++..+.-.. +.+ .--.=|+...|...|.+...
T Consensus 294 --------~~F~~lYf~vL-lLtg------qFE~AI~~L~-~~~---~vdAVH~AIaL~~~gLL~~~~~lls~~~~~~~l 354 (661)
T 2qx5_A 294 --------SRFSNYYLQTL-LLSG------LYGLAIDYTY-TFS---EMDAVHLAIGLASLKLFKIDSSTRLTKKPKRDI 354 (661)
T ss_dssp --------GGGTTCHHHHH-HHTT------CHHHHHHHHH-TTC---HHHHHHHHHHHHHTTC-----------------
T ss_pred --------hhhhhHHHHHH-HHHh------hHHHHHHHHH-hcC---chhHHHHHHHHHHcCCccCCCcccccCCCcccc
Confidence 1111 333433 3332 1232221111 112 22356777777766654320
Q ss_pred hhhHHHHHHHHHHHhCCCchhHHHHHhcccCCCCchH---HHHHHHHHHHHhhcc------cCCChh-HHHHHHHHh---
Q 002180 776 DLQILDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPY---LQATLIREILFQYCE------SWSSEE-SQRKFIEAL--- 842 (955)
Q Consensus 776 ~~~~Lt~~fA~QLe~~glw~wAifVllHl~d~~~~~~---~R~~~vr~lL~r~~~------~~~~~~-~~~~fL~~L--- 842 (955)
+...|-..|+...+. +--..|+.-+.+|...+. +. +=..+|++++-..-. .+..+. ....++++.
T Consensus 355 N~arLI~~Yt~~F~~-td~~~Al~Y~~li~l~~g-~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~l 432 (661)
T 2qx5_A 355 RFANILANYTKSFRY-SDPRVAVEYLVLITLNEG-PTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPL 432 (661)
T ss_dssp CHHHHHHHHHTTTTT-TCHHHHHHHHHGGGGSCC-HHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGG
T ss_pred cHHHHHHHHHHHhhc-CCHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcc
Confidence 123455566666643 467788865555533221 11 123455666542211 011110 011234422
Q ss_pred -CCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHhCcCHHHHHHHHHHhhccch
Q 002180 843 -GVP-----SEWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTL 891 (955)
Q Consensus 843 -~IP-----~~WI~eAkAl~a~~~~d~~~e~~~Ll~A~~~~eAH~v~i~~vaP~~ 891 (955)
++. -.=|-+-.|..+..+|.+..++..+.-||+|+.|-+++.+.|+.-.
T Consensus 433 i~l~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l 487 (661)
T 2qx5_A 433 LHVRDEKEFLHTITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTL 487 (661)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 222 2224455677888999999999999999999999999999888544
No 14
>2ffg_A YKUJ; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, unknown function; 2.31A {Bacillus subtilis} SCOP: d.317.1.1
Probab=34.27 E-value=35 Score=29.85 Aligned_cols=43 Identities=7% Similarity=0.138 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhhhc---CC----E---------EEEEecCCcEEEEEE----CCcccccCCC
Q 002180 149 SDDFVKKMKERTERQ---GA----R---------FVSFDPVSGEWKFLV----VHFSRFGLSD 191 (955)
Q Consensus 149 ~~~~~~~l~~~~~~~---~~----~---------fv~y~~~tg~w~F~V----~HFskYGL~D 191 (955)
+...++||+.+.+.. |- + -|.||+.||+|++++ .+-.+|-+||
T Consensus 4 L~~II~RL~AM~~d~~~~~e~q~R~FE~~G~~~c~V~y~~~t~~F~L~~~~~~~~~~~fqFDn 66 (87)
T 2ffg_A 4 LMGIITRLQSLQETAEAANEPMQRYFEVNGEKICSVKYFEKNQTFELTVFQKGEKPNTYPFDN 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEEETTTTEEEEEEEETTEEEEEEEESC
T ss_pred HHHHHHHHHHHHhccccCCccceeeeccCCEEEEEEEEecCCCeEEEEEecCCCcccccccCC
Confidence 456789998886442 22 2 489999999998863 2344444443
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=22.33 E-value=3.9e+02 Score=35.14 Aligned_cols=87 Identities=10% Similarity=0.157 Sum_probs=59.8
Q ss_pred HHHHHHHHhCCCchhHHHHHhcccCCCCchHHHHHHHHHHHHhhcccCCChhHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 002180 782 MGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIEALGVPSEWLHEAMAVYYNYYG 861 (955)
Q Consensus 782 ~~fA~QLe~~glw~wAifVllHl~d~~~~~~~R~~~vr~lL~r~~~~~~~~~~~~~fL~~L~IP~~WI~eAkAl~a~~~~ 861 (955)
-.-|.-++..|++.+|+-++-.... ...++..++. ++..+ +....|.+++.-|..|..-|||.. ..|
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-------~~~A~~VLie-~i~nl---drAiE~Aervn~p~vWsqLAKAql--~~G 1119 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-------NTSAVQVLIE-HIGNL---DRAYEFAERCNEPAVWSQLAKAQL--QKG 1119 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-------HHHHHHHHHH-HHhhH---HHHHHHHHhcCCHHHHHHHHHHHH--hCC
Confidence 4467778899999999998888742 2344444442 34322 112457778899999999998886 457
Q ss_pred CHHHHHHHHHhCcCHHHHHH
Q 002180 862 ELSKALEHFLECANWQKAHS 881 (955)
Q Consensus 862 d~~~e~~~Ll~A~~~~eAH~ 881 (955)
++.+++.++++|++++.-.+
T Consensus 1120 ~~kEAIdsYiKAdD~say~e 1139 (1630)
T 1xi4_A 1120 MVKEAIDSYIKADDPSSYME 1139 (1630)
T ss_pred CHHHHHHHHHhcCChHHHHH
Confidence 78888888888876655433
Done!