BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002183
(955 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2
PE=2 SV=1
Length = 1040
Score = 1007 bits (2604), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/1011 (50%), Positives = 678/1011 (67%), Gaps = 81/1011 (8%)
Query: 3 ESLMAGKRKAPEEDLHVTGTPEEESTKKQR-----------------------NLTRSCV 39
ES GK K DL V GT E KK R C
Sbjct: 53 ESASGGKNK---RDLDVEGTDEPIFGKKPRIEDSINEDLSLADLMPRVKVQSVETVEGCT 109
Query: 40 HEVAVPSG--YALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVS 97
HEVA+P+ Y K G+ AK Y F LD FQR ++ C++ N+SVLVS
Sbjct: 110 HEVALPADEDYIPLKPRV-----------GKAAKEYPFILDAFQREAIQCVDNNQSVLVS 158
Query: 98 AHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSP 157
AHTSAGKT AEYAIA+A R+KQRVI+TSP+KALSNQKYRE+++EF+DVGLMTGDVT++P
Sbjct: 159 AHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINP 218
Query: 158 NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMV 217
ASCLVMTTEILR MLYRGSEV++EVAWVIFDEIHYM+D ERGVVWEE+II LP + V
Sbjct: 219 TASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYV 278
Query: 218 FLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFRE 277
FLSAT+ NA QFAEWICHLHKQPCHV+YTD+RPTPLQHY+FP GG GL+LVVDE FRE
Sbjct: 279 FLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFRE 338
Query: 278 DNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSF 337
DNF + G G GR KGG+ G S++FKIVKMIMER FQPVI+FSF
Sbjct: 339 DNFNTAMQVL---RDAGDLAKGDQKGR--KGGT-KGPSNVFKIVKMIMERNFQPVIIFSF 392
Query: 338 SRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAV 397
S+++CE +A+ M+KLDFNT EEK VE+VF NA+DCL++ED+ LP +E +LPLLKRGI +
Sbjct: 393 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 452
Query: 398 HHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGS 457
HH GLLP++KE +E+LF EGL+KALFATETFAMG+NMPA+TV+FT +K+DG R+I S
Sbjct: 453 HHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKYDGKDFRWISS 512
Query: 458 GEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLM 517
GEYIQMSGRAGRRG DDRGI I+MVDE+M K ++ G PL S F L+Y +LNL+
Sbjct: 513 GEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLL 572
Query: 518 SRAEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLD 577
R E + E++++ SF+QFQ+ +A+P + +KV EE+ + E V Y+K++
Sbjct: 573 -RVE-EINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQ 630
Query: 578 IAQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKP----------- 626
+A+L K++ I +P+ L +L GRL+KV+ G D+GWGVVVN KK
Sbjct: 631 LAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDP 690
Query: 627 -----------------SAGVGTLPS----RGGGYIVPVQLPLISTLSKIRLSVPPDLRP 665
SA P+ +G +VPV + L+S +S +RL +P DLRP
Sbjct: 691 LYVVEVLLRCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISTVRLYIPKDLRP 750
Query: 666 LDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPL-NK 724
+D RQS+L ++QE++ RFP G+P L+P+ DM I+D + ++ ++E EH++++HPL N
Sbjct: 751 VDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHND 810
Query: 725 SQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQL 784
E +RKA++ +I+ K +++ ++ DELK R RVL++LG + V+++
Sbjct: 811 PNLETVYTLCERKAQIALDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEM 870
Query: 785 KGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPL 844
KGR AC I + DELL+TE+MFNG FNDL Q AL SCF+ + SSE L +LA PL
Sbjct: 871 KGRVACEISSADELLLTEMMFNGLFNDLSSEQATALLSCFVFQENSSEMPKLTEQLAGPL 930
Query: 845 QQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEG 904
+Q+QE A++IA++ E KLE++ + Y+ S+ +P LMDV+Y W+ GATFA + +MTD+FEG
Sbjct: 931 RQMQECAKRIAKVSAEAKLEIDEETYL-SSFKPHLMDVVYTWATGATFAHICKMTDVFEG 989
Query: 905 SIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 955
SIIR RRL+E L Q+ AA+A+G LE KFA ++R I+F+ SLYL
Sbjct: 990 SIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1040
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2
PE=1 SV=3
Length = 1042
Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/953 (52%), Positives = 664/953 (69%), Gaps = 55/953 (5%)
Query: 38 CVHEVAVPS--GYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVL 95
C HEVA+P+ Y K G+ AK Y F LD FQR ++ C++ N+SVL
Sbjct: 110 CTHEVALPAEEDYLPLKPRV-----------GKAAKEYPFILDAFQREAIQCVDNNQSVL 158
Query: 96 VSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL 155
VSAHTSAGKT AEYAIA+A R+KQRVI+TSP+KALSNQKYRE+++EF+DVGLMTGDVT+
Sbjct: 159 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 218
Query: 156 SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK 215
+P ASCLVMTTEILR MLYRGSEV++EVAWVIFDEIHYM+D ERGVVWEE+II LP +
Sbjct: 219 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 278
Query: 216 MVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQF 275
VFLSAT+ NA QFAEWICHLHKQPCHV+YTD+RPTPLQHY+FP GG GL+LVVDE F
Sbjct: 279 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 338
Query: 276 REDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVF 335
REDNF + G G GR KGG+ G S++FKIVKMIMER FQPVI+F
Sbjct: 339 REDNFNTAMQVL---RDAGDLAKGDQKGR--KGGT-KGPSNVFKIVKMIMERNFQPVIIF 392
Query: 336 SFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395
SFS+++CE +A+ M+KLDFNT EEK VE+VF NA+DCL++ED+ LP +E +LPLLKRGI
Sbjct: 393 SFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGI 452
Query: 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYI 455
+HH GLLP++KE +E+LF EGL+KALFATETFAMG+NMPA+TV+FT +K+DG R+I
Sbjct: 453 GIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWI 512
Query: 456 GSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILN 515
SGEYIQMSGRAGRRG DDRGI I+MVDE+M K ++ G PL S F L+Y +LN
Sbjct: 513 SSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLN 572
Query: 516 LMSRAEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLK 575
L+ R E + E++++ SF+QFQ+ +A+P + +KV EE+ + E V Y+K++
Sbjct: 573 LL-RVE-EINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEESVVIYYKIR 630
Query: 576 LDIAQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKP--------- 626
+A+L K++ I +P+ L +L GRL+KV+ G D+GWGVVVN KK
Sbjct: 631 QQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGEL 690
Query: 627 -------------------SAGVGTLPS----RGGGYIVPVQLPLISTLSKIRLSVPPDL 663
SA P+ +G +VPV + L+S +S +RL +P DL
Sbjct: 691 DPLYVVEVLLRCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISSVRLYIPKDL 750
Query: 664 RPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPL- 722
RP+D RQS+L ++QE++ RFP G+P L+P+ DM I+D + ++ ++E EH++++HPL
Sbjct: 751 RPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLH 810
Query: 723 NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVV 782
N E ++KA++ +I+ K +++ ++ DELK R RVL++LG + V+
Sbjct: 811 NDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVI 870
Query: 783 QLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAK 842
++KGR AC I + DELL+TE+MFNG FNDL Q AL SCF+ + SSE L +LA
Sbjct: 871 EMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAG 930
Query: 843 PLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIF 902
PL+Q+QE A++IA++ E KLE++ + Y+ S+ +P LMDV+Y W+ GATFA + +MTD+F
Sbjct: 931 PLRQMQECAKRIAKVSAEAKLEIDEETYL-SSFKPHLMDVVYTWATGATFAHICKMTDVF 989
Query: 903 EGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 955
EGSIIR RRL+E L Q+ AA+A+G LE KFA ++R I+F+ SLYL
Sbjct: 990 EGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1042
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/996 (48%), Positives = 652/996 (65%), Gaps = 71/996 (7%)
Query: 14 EEDLHVTG----TPEEESTKKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEM 69
E L V G T + ST++ L H+V++P Y D +P+
Sbjct: 139 EASLQVAGKVGMTEAKSSTEEVVELRHQVRHQVSIPPNY----DYVPISKHKSPI---PP 191
Query: 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129
A+TY F LDPFQ VS+AC+ER ESVLVSAHTSAGKT VAEYA+A + RDKQRVIYTSP+K
Sbjct: 192 ARTYPFTLDPFQAVSIACIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIK 251
Query: 130 ALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFD 189
ALSNQKYREL EF DVGLMTGDVT++P+A+CLVMTTEILR MLYRGSEV++EVAWVIFD
Sbjct: 252 ALSNQKYRELLAEFGDVGLMTGDVTINPDATCLVMTTEILRSMLYRGSEVMREVAWVIFD 311
Query: 190 EIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR 249
EIHYM+D+ERGVVWEE+II LP VFLSAT+ NA QFAEWI +H+QPCHVVYTDFR
Sbjct: 312 EIHYMRDKERGVVWEETIILLPDKSHFVFLSATIPNAMQFAEWITKIHRQPCHVVYTDFR 371
Query: 250 PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGG 309
PTPLQHY+FP G G++LVVDEK FRE+NF + ++++ G MA G
Sbjct: 372 PTPLQHYLFPSGSDGIHLVVDEKSNFREENFQRAMSALMEKQ-------GDDPAAMATKG 424
Query: 310 SGSGG----------SDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEE 359
+ G SDI+KIVKMIM + + PVIVFSFS+RECE A+ MSKLD N Q E
Sbjct: 425 NAKKGKTGKGGVKGPSDIYKIVKMIMVKNYNPVIVFSFSKRECEALALQMSKLDMNDQTE 484
Query: 360 KDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLV 419
+D V +F NAV+ L+E+DR LP IE +LPLL+RGI +HHSGLLP++KE++E+LFQEGL+
Sbjct: 485 RDLVTTIFNNAVNQLSEKDRELPQIEHILPLLRRGIGIHHSGLLPILKEVIEILFQEGLL 544
Query: 420 KALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICI 479
K LFATETF++GLNMPAKTVVFT V+K+DG + R+I GEYIQMSGRAGRRG DDRGI I
Sbjct: 545 KVLFATETFSIGLNMPAKTVVFTNVRKFDGKTFRWISGGEYIQMSGRAGRRGLDDRGIVI 604
Query: 480 IMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQY 539
+M+DE+M+ K M+ G+ L S F LSY ILNL+ R EG + E +++ F QFQ
Sbjct: 605 LMIDEKMDPPVAKSMLKGEADRLDSAFHLSYNMILNLL-RVEG-ISPEFMLERCFFQFQN 662
Query: 540 EKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYL 599
+P + K+ + ++ S E + EYH LK + + + + + P L +L
Sbjct: 663 SLEVPKLEAKLEESQQHYDSFTILDERPLEEYHTLKTQLERYRTDVRTVVNHPNFCLSFL 722
Query: 600 GSGRLIKVREGGTDWGWGVVVNVVKKP-----------------------SAGVGTLPSR 636
GRL++V+ G D+ WGVVVNV K+P ++ G L R
Sbjct: 723 QGGRLVRVKVGNEDFDWGVVVNVSKRPLPKGQSNEYLPQESYIVHTLVMVASDTGPLRIR 782
Query: 637 GGGY---------------IVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELES 681
G +VP L + ++ IR+ +P DL+ + ++ A+ E++
Sbjct: 783 SGHLPEVHPPAAEDKGKFEVVPFLLSSLDGIAHIRVFLPNDLKSQGQKLTVGKALSEVKR 842
Query: 682 RFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEV 740
RFP+G+ L+PV++M I++P + L+ ++ LE +L ++PL N S+ E + + RK +
Sbjct: 843 RFPEGITLLDPVENMNIKEPTFIKLMKKVNILESRLLSNPLHNFSELEEKYAEYLRKLAL 902
Query: 741 NHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLV 800
E++ LK K+ ++ DEL +R RVL++LG +D V+++KGR AC I +GD LL+
Sbjct: 903 LEEVKDLKKKLSKARSIMQLDELNSRKRVLRRLGFTTSDDVIEVKGRVACEISSGDGLLL 962
Query: 801 TELMFNGTFNDLDHHQVAALASCFIPVDKSS-EQINLRMELAKPLQQLQESARKIAEIQN 859
TEL+FNG FNDL Q AAL SC + +KS E ++ ELA PL+ LQE AR+IA++
Sbjct: 963 TELIFNGMFNDLTPEQCAALLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSK 1022
Query: 860 ECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQ 919
E K E+N +EYV S +P LM+V+Y W+ GA+FA++ +MTD++EGS+IR RRL+E + Q
Sbjct: 1023 ESKQELNEEEYVNS-FKPSLMEVVYAWAHGASFAQICKMTDVYEGSLIRMFRRLEELIRQ 1081
Query: 920 LRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 955
+ AA+ +G +L++K + R I+FS SLYL
Sbjct: 1082 MVDAAKVIGNTSLQQKMEDTIACIHRDIVFSASLYL 1117
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/974 (47%), Positives = 653/974 (67%), Gaps = 67/974 (6%)
Query: 34 LTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEM---AKTYSFELDPFQRVSVACLER 90
L+ H+VA+P Y T P+ + A+TY F LDPFQ +++C++R
Sbjct: 115 LSHQVRHQVALPPNYDYT-----------PIAEHKRVNEARTYPFTLDPFQDTAISCIDR 163
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMT 150
ESVLVSAHTSAGKT VAEYAIA + ++KQRVIYTSP+KALSNQKYREL EF DVGLMT
Sbjct: 164 GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMT 223
Query: 151 GDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210
GD+T++P+A CLVMTTEILR MLYRGSEV++EVAWVIFDE+HYM+D+ERGVVWEE+II L
Sbjct: 224 GDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL 283
Query: 211 PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVD 270
P ++ VFLSAT+ NA +FAEWIC +H QPCH+VYT+FRPTPLQHY+FP G G+YLVVD
Sbjct: 284 PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVD 343
Query: 271 EKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMA---KGGSGSGGS--DIFKIVKMIM 325
EK FRE+NF K + Q IG + + G+ KGGS G + DI+KIVKMI
Sbjct: 344 EKSTFREENFQKAMASISNQ-IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIW 402
Query: 326 ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIE 385
++K+ PVIVFSFS+R+CE+ A+ MSKLDFN+ +EK+ + ++F NA+ L E DR LP I+
Sbjct: 403 KKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIK 462
Query: 386 LMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK 445
+LPLL+RGI +HHSGLLP++KE++E+LFQEG +K LFATETF++GLNMPAKTVVFT+V+
Sbjct: 463 HILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 522
Query: 446 KWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVST 505
KWDG R++ GEYIQMSGRAGRRG DDRGI I+M+DE+ME K MV G+ L S
Sbjct: 523 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSA 582
Query: 506 FRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGE 565
F L Y ILNLM R EG + E ++++SF QFQ ++P + KK+++L+++ ++ E
Sbjct: 583 FHLGYNMILNLM-RVEG-ISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDE 640
Query: 566 AEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTD-WGWGVVVNVVK 624
V EYH+++ I + + +T P L +L GRL+++ G D +GWG VV+ K
Sbjct: 641 ENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDFAK 700
Query: 625 K--------------------------------------PSAGVGTLPSRGG----GYIV 642
+ P+ G P+ G ++
Sbjct: 701 RINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEEGEKSICAVI 760
Query: 643 PVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPE 702
P+ L I ++ +RL +P D+R ++++ +++E+ RFP G+P L+PVK+MKIED +
Sbjct: 761 PITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDED 820
Query: 703 VVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDSQIQKFRD 761
+ L+ +I+ L KL ++PL S ++ + RK +++ +++QLK K+ +SQ D
Sbjct: 821 FLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLD 880
Query: 762 ELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALA 821
+L+ R RVL++LG + +++LKGR AC I +GDELL+TEL+FNG FN+L Q AAL
Sbjct: 881 DLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALL 940
Query: 822 SCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMD 881
SCF ++ E L+ ELA+PL+ ++E A KIA+I + K+EV +YVES R LM+
Sbjct: 941 SCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES-FRHELME 999
Query: 882 VIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASE 941
V+Y W +GATF ++ +MTD++EGS+IR +RL+E + +L A +G +L++K A +
Sbjct: 1000 VVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLK 1059
Query: 942 SLRRGIMFSNSLYL 955
+ R I+ + SLYL
Sbjct: 1060 LIHRDIVSAGSLYL 1073
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1
Length = 1026
Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/961 (46%), Positives = 618/961 (64%), Gaps = 60/961 (6%)
Query: 32 RNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERN 91
R +C HEVA+P + GT E AK Y F+LD FQ+ ++ C++ N
Sbjct: 89 RTDNENCTHEVAIPPNAEFAELRENSGT--------EPAKYYPFQLDAFQKQAILCIDNN 140
Query: 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151
+SVLVSAHTSAGKT VA YAIA R+KQRVIYTSP+KALSNQKYREL +EFKDVGLMTG
Sbjct: 141 QSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSPIKALSNQKYRELEEEFKDVGLMTG 200
Query: 152 DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP 211
DVTL+P+ASCLVMTTEILR MLYRGSE++KEV WV++DEIHYM+D+ERGVVWEE+II +
Sbjct: 201 DVTLNPDASCLVMTTEILRSMLYRGSEIMKEVGWVVYDEIHYMRDKERGVVWEETIILMS 260
Query: 212 PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDE 271
IK FLSAT+ NA QFA+W+ + +QP +VVYTD+RPTPLQH+++PVGG G+Y VV+
Sbjct: 261 KNIKQAFLSATIPNARQFAQWVASIKQQPVNVVYTDYRPTPLQHWIYPVGGEGMYEVVNV 320
Query: 272 KEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAK---GGSGSGGSDIFKIVKMIMERK 328
K +FRED F + + G G ++G K GG G S++ KI++ +
Sbjct: 321 KGEFREDKF--------RDAMSGLATAGDSAGSFNKRRTGGGTQGDSNVLKIIRSVASND 372
Query: 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELML 388
IVFSFSR+ECE +A+S+ +DFN EK V+ V+++A+ L+ ED+ LP I +L
Sbjct: 373 GLNCIVFSFSRKECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNIL 432
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
PLL+RGI VHHSGL+P++KE +E+LF EGLVK LFATETF+MGLNMPA+TVVFT+ +K+D
Sbjct: 433 PLLRRGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFD 492
Query: 449 GDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRL 508
G +RYI SGEYIQM+GRAGRRGKDDRG I+MVD M + K ++ G PL S FRL
Sbjct: 493 GSDNRYITSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIKGATDPLNSQFRL 552
Query: 509 SYYSILNLMSRAEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEV 568
+Y +LNLM R EG +I NSFHQFQ +P+I KK ++E + AS + E E+
Sbjct: 553 TYNMVLNLM-RVEG-MAVSWIINNSFHQFQSYAKIPEIDKKCVQVERKIASFNFPWENEM 610
Query: 569 AEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKK--- 625
L+ + ++++ P+ ++ +L +GRL KV+ G D+ WG ++N KK
Sbjct: 611 RTLVDLQDQLEATRQRIIQIQREPKYIVGFLHAGRLFKVKSGDRDFKWG-ILNQFKKEQN 669
Query: 626 ---------------------------PSAGVG--TLPSRGGGYI-VPVQLPLISTLSKI 655
P+ V LP R +I VP+ + I+ +S +
Sbjct: 670 PDDRNDQIYLCDMMIAINTEGRFDPTNPATLVPGFDLPKR--RWIRVPMTIDRITAISAV 727
Query: 656 RLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEH 715
RL VP D+ D + + + RF +P L+P++DM+I+ E+ +L+ + + LE
Sbjct: 728 RLKVPADIDKPDGQMRLDGMMAAATKRFGNQIPLLDPIQDMEIKTVEMKELIAREKSLEG 787
Query: 716 KLFAHPLNKSQDENQI-RCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLG 774
+L H + K + + + F++K + E+ LK++ + Q +EL NR RVL++LG
Sbjct: 788 RLETHSMTKRDNMKDLKKQFEQKQDAVKELNALKAERKSVQSTLHLEELNNRKRVLRRLG 847
Query: 775 HIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQI 834
++ D + LKG AC + DEL++TE++ G FN LD Q AAL SCF+ DK +
Sbjct: 848 YLGNDDALVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAALLSCFVFQDKCAAP- 906
Query: 835 NLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAE 894
L EL L +L E AR +A++ NECK+EV D+YV S+ P LMDV+Y W GATF+E
Sbjct: 907 KLATELQTCLSELHEQARNVAKVSNECKMEVMEDKYV-SSFNPGLMDVVYQWVNGATFSE 965
Query: 895 VIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 954
+++ TD+FEGSIIR+ RRL+E L ++ AA+A+ LE+KF A ++L+R I+F+ SLY
Sbjct: 966 IVKTTDVFEGSIIRTLRRLEEVLREMINAAKALANKELEQKFEDARKNLKRDIVFAASLY 1025
Query: 955 L 955
L
Sbjct: 1026 L 1026
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 797 bits (2058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/966 (43%), Positives = 619/966 (64%), Gaps = 59/966 (6%)
Query: 29 KKQRNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACL 88
K +R+ +H+V VP Y + + + AKTY FELDPFQ ++ C+
Sbjct: 85 KDKRHDRSFALHKVVVPDDYD-------YIPLNKHIPSDPPAKTYPFELDPFQSTAIKCV 137
Query: 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGL 148
ER ESVLVSAHTSAGKT +AEYAIA A +++QRVIYTSP+K+LSNQKYREL EF DVGL
Sbjct: 138 ERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELLSEFGDVGL 197
Query: 149 MTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208
MTGDV+++P+ASCL+MTTEILR MLY+ SE++ E+AWVIFDE+HYM+D++RGVVWEE++I
Sbjct: 198 MTGDVSINPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFDEVHYMRDKDRGVVWEETLI 257
Query: 209 FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLV 268
LP AI+ +FLSAT+ NA QFA WI +HKQPCHVVYTD+RPTPLQH+++P G G+Y++
Sbjct: 258 LLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYRPTPLQHFIYPQGADGIYML 317
Query: 269 VDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERK 328
VDEK +F+ +NF K+ + R+EN S + K S + +I+ M++ +
Sbjct: 318 VDEKNKFKTENFKKVLEVL---DHSTRQENYSKSSKKVKKSSS-----LERIINMVLSNR 369
Query: 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELML 388
+ P+IVF FS++ECE +A KLD N E K+ V ++F +A++ L+EEDR L E M
Sbjct: 370 YDPIIVFCFSKKECEINAHQFGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMR 429
Query: 389 PLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448
LL RGI +HHSGLLP++KELVE+LFQEGLV+ LFATETF++GLNMPA+TV+FT +K+
Sbjct: 430 SLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFS 489
Query: 449 GDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRL 508
G++ R++ SGEY+QMSGRAGRRG D +G+ I+++D+ ++ + ++ G+ L S F L
Sbjct: 490 GNNFRWLTSGEYMQMSGRAGRRGIDTKGLSIVILDQSIDEQAARCLMNGQADVLNSAFHL 549
Query: 509 SYYSILNLMSRAEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEV 568
SY ILNLM R E + + E ++K SF+QFQ ++LP I +++ +L+ E S++ E V
Sbjct: 550 SYGMILNLM-RIE-EISPEDILKKSFYQFQNMESLPLIKEELMQLKNEETSINIPNETAV 607
Query: 569 AEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKK--- 625
E+H LKL + + +++ +T P+ L YL SGRLI+++ GG + WGV+VNV+K+
Sbjct: 608 KEFHDLKLQLEKYGEEIQKVMTHPDNCLPYLQSGRLIQIKLGGIIFPWGVLVNVIKREFD 667
Query: 626 --------------------------------PSAGVGTLPSRGGGY-IVPVQLPLISTL 652
PS V P+ Y IV V L + +
Sbjct: 668 PNTREQVAPHETYVLDVLLPISSNSMSNHKVNPSILVPPRPNETPLYEIVSVLLTAVCNI 727
Query: 653 SKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEE 712
S IR+ +P +L +++ V E+ F + +P L+P++ M IE + + ++E
Sbjct: 728 SSIRIYMPRELNSNESKLRAYRRVNEVIEEFKE-IPYLDPLEHMHIESSTLSLSLRKLEI 786
Query: 713 LEHKLFAHPLNK-SQDENQIRCFQRKAEVNHEIQQLKSKMRDSQ-IQKFRDELKNRSRVL 770
LE KLF P K S+ + F++K + +I+ + +K+ +++ I + R ELK R RVL
Sbjct: 787 LEPKLFDSPYYKDSKHRAEYHEFRKKLNLRAQIKDISTKITNTEAIIQLR-ELKIRQRVL 845
Query: 771 KKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKS 830
++LG + V+ +KGR AC I +GDELL+ EL+F G FN + ++AA SCF+ DKS
Sbjct: 846 RRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPEEIAAALSCFVYEDKS 905
Query: 831 S-EQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKG 889
+NL+ K + E+A++IA + E KL+ N +Y+ +P +M+ + W G
Sbjct: 906 EVSTLNLKEPFKKMYLTIIEAAKRIATVSLESKLQFNESDYLHQ-FKPDIMEPVSLWING 964
Query: 890 ATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMF 949
A+F E+ ++ ++EGSI+R+ RRLDE L QL AA +G L++K + L R I+F
Sbjct: 965 ASFQEICIVSKLYEGSIVRTFRRLDELLKQLEHAAIVLGNNELKEKSVLTEQKLHRDIIF 1024
Query: 950 SNSLYL 955
S SLYL
Sbjct: 1025 SASLYL 1030
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 545 bits (1403), Expect = e-154, Method: Compositional matrix adjust.
Identities = 352/961 (36%), Positives = 518/961 (53%), Gaps = 102/961 (10%)
Query: 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132
++FE D FQ+ ++ LER++SV V+AHTSAGKT VAEYAIA+A + R IYTSP+KALS
Sbjct: 307 WAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALS 366
Query: 133 NQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
NQK+R+ F DVGL+TGDV L P ASCL+MTTEILR MLY GS+V++++ WVIFDE+H
Sbjct: 367 NQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFDEVH 426
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
Y+ D ERGVVWEE +I LP + ++ LSAT+ NA +FA+WI L ++ +V+ T RP P
Sbjct: 427 YINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVP 486
Query: 253 LQHYVFPVGGSG-----LYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAK 307
L+HY+F G S L+L++D + F + + K+++ + A +
Sbjct: 487 LEHYLF-TGNSSKTQGELFLLLDSRGAFHTKGYYAAVEA-KKERMSKHAQTFGAKQPTHQ 544
Query: 308 GGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF 367
GG ++ + R PV+VF+FSR C++ A ++ LD T EK +
Sbjct: 545 GGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLFL 604
Query: 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATET 427
Q + L DR LP + M LL RG+ VHHSG+LP++KE+VE+LF GLVK LFATET
Sbjct: 605 QRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATET 664
Query: 428 FAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQM- 486
FAMG+NMPA+TVVF +++K DG + R + GEY+QM+GRAGRRG D G I++ ++
Sbjct: 665 FAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRVP 724
Query: 487 EMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQF-------QY 539
EM L M++GKP+ L S FRL+Y ILNL+ R + E ++K SF +F +
Sbjct: 725 EMADLHRMMMGKPSQLQSQFRLTYTMILNLL-RVDA-LRVEDMMKRSFSEFPSRKDSKAH 782
Query: 540 EKALPDIGKKVSKLEEEAASLDASGE-AEVAEYHKLKLDIAQLEKKLMSEITRPERVLYY 598
E+AL ++ K++ LEE D +G+ ++ EY+ ++ + + + I L
Sbjct: 783 EQALAELTKRLGALEEP----DMTGQLVDLPEYYSWGEELTETQHMIQRRIMESVNGLKS 838
Query: 599 LGSGRLIKVREGGTDWGWGVVVNVVKKPSAGVGTL-----------PSRGGGYIVPVQLP 647
L +GR++ V+ GV++ V ++ V T P G V P
Sbjct: 839 LSAGRVVVVKNQEHHNALGVILQVSSNSTSRVFTTLVLCDKPLSQDPQDRGPATAEVPYP 898
Query: 648 LISTLSKIRLSVPP--------DLRPLD--ARQSILLAVQE---LESRFPQGLPKLNPVK 694
L +L +P L+P D A + +L V LE + PK
Sbjct: 899 --DDLVGFKLFLPEGPCDHTVVKLQPGDMAAITTKVLRVNGEKILEDFSKRQQPKFK--- 953
Query: 695 DMKIEDPEVVDLVNQIEELEHKLFAHP-----------------------LNKSQDENQI 731
+DP + + ++EL AHP L + E I
Sbjct: 954 ----KDPPLAAVTTAVQELLRLAQAHPAGPPTLDPVNDLQLKDMSVVEGGLRARKLEELI 1009
Query: 732 RCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELK---------------NRSRVLKKLGHI 776
+ Q Q LK + R QIQK + L+ R VL+ LG++
Sbjct: 1010 QGAQCVHSPRFPAQYLKLRER-MQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYV 1068
Query: 777 DADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALAS---CFIPVDKSSEQ 833
D G V+L GR AC + + ELL+TELMF+ + L ++AAL S C P D +
Sbjct: 1069 DEAGTVKLAGRVACAMSS-HELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDAGDQL 1127
Query: 834 INLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFA 893
N L + +++++ A++I E+Q C L V+E+V + L++V+Y W++G F+
Sbjct: 1128 PN---TLKQGIERVRAVAKRIGEVQVACGLNQTVEEFV-GELNFGLVEVVYEWARGMPFS 1183
Query: 894 EVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSL 953
E+ ++ EG ++R +RL E LR AA+ VGE L K A+ LRR I+F+ SL
Sbjct: 1184 ELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASL 1243
Query: 954 Y 954
Y
Sbjct: 1244 Y 1244
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 331/999 (33%), Positives = 521/999 (52%), Gaps = 147/999 (14%)
Query: 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129
A+++ FELD FQ+ +V LE+ +SV V+AHTSAGKT VAEYAIAMA R+ + IYTSP+K
Sbjct: 323 ARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIK 382
Query: 130 ALSNQKYRELHQEFKDV--GLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVI 187
ALSNQK+R+ + F DV GL+TGDV ++P+A+CL+MTTEILR MLYRG++++++V +VI
Sbjct: 383 ALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVI 442
Query: 188 FDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTD 247
FDE+HY+ D++RGVVWEE II LP +K + LSAT+ N +FA WI ++ +V+ T
Sbjct: 443 FDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTP 502
Query: 248 FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKI--------------- 292
RP PL+ ++ L V+++ +F E NF K ++ +
Sbjct: 503 KRPVPLEINIW--AKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGST 560
Query: 293 --GGRRENGKASGRMAKGGSGSGGSD----------------IF-----------KIVKM 323
GGR + GR +G S GG++ F +IV
Sbjct: 561 ARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNY 620
Query: 324 IMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPA 383
+ +R+ P++VF FS++ CE++A + ++F +EK + + ++ L +EDR+LP
Sbjct: 621 LRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQ 680
Query: 384 IELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443
I LL+RGIAVHH GLLP++KEL+E+LF +G +K LFATETFAMGLN+P +TV+F++
Sbjct: 681 ILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSS 740
Query: 444 VKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMV-DEQMEMNTLKDMVLGKPAPL 502
++K DG+ R + GE+ QM+GRAGRRG D G I+M + + + T K++ +G P L
Sbjct: 741 IRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRL 800
Query: 503 VSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDA 562
S FRL+Y ILNL+ R E E +IK SF + E P+ K++ L+EE +++
Sbjct: 801 QSQFRLTYNMILNLL-RIEA-LRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEY 858
Query: 563 SG----EAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGV 618
+ ++ ++ +L L + LM E+ + +L+ L GRL+ R+ G
Sbjct: 859 KSCEICDNDIEKFLELMLAYKEATVNLMQEMVKSPSILHILKEGRLVAFRDPNDCLKLGF 918
Query: 619 VVNVVKKPSAGVGTLPSRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQE 678
V V K + V + P +LP + + L+ +
Sbjct: 919 VFKVSLKDAVCVIMT------FTKPYKLP-------------------NGEPNHLIYFPK 953
Query: 679 LESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNK-------------S 725
+ + PK E P V IE + + FA PL K +
Sbjct: 954 ADGYRRRNFPKFQKTDFYMEEVP-----VTAIEVITKRKFAAPLGKVIKKDVAALNEFNA 1008
Query: 726 QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDEL-----------------KNRSR 768
+ N + K +N E Q LK RDE+ K ++
Sbjct: 1009 ETNNILDGKTLKEAINIEKQGLKIHQILLDRTNIRDEIFKLKSIKCPNLSQHIVPKFKAH 1068
Query: 769 VLKK----LGHIDADGVVQL-------------------------KGRAACLIDTGDELL 799
V+KK L H+ +D + L KGR AC I++G EL+
Sbjct: 1069 VIKKKIEELYHLMSDQNLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVACEINSGYELV 1128
Query: 800 VTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQIN--LRMELAKPLQQLQESARKIAEI 857
+TEL+ + + ++ AL S F+ K+ E+ + LAK Q+++E +K+ +
Sbjct: 1129 LTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLCV 1188
Query: 858 QNECKLEVNVDEYVESTVRPF-LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEF 916
N ++ + DE + F +M+V+Y W++G +F E+++M+ EG+++R LDE
Sbjct: 1189 FNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEI 1248
Query: 917 LNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 955
+++ A+ +G L K + A E ++R I+F+ SLYL
Sbjct: 1249 CREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL 1287
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 233/513 (45%), Positives = 326/513 (63%), Gaps = 24/513 (4%)
Query: 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127
EMA + FELD FQ+ ++ LE +SV V+AHTSAGKT VAEYAIA+A + + IYTSP
Sbjct: 272 EMALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTKAIYTSP 331
Query: 128 LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVI 187
+KALSNQK+R+ +F+DVG++TGDV ++P SCL+MTTEILR MLYRG++++++V +VI
Sbjct: 332 IKALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCLLMTTEILRSMLYRGADLIRDVEFVI 391
Query: 188 FDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTD 247
FDE+HY+ D ERGVVWEE II LPP + ++ LSAT+ N +FA W+ K+ +V+ T
Sbjct: 392 FDEVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTKKKNIYVISTL 451
Query: 248 FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAK 307
RP PL+HY++ ++ +VD+ +F D + D K ++ K S R
Sbjct: 452 KRPVPLEHYLWV--KQNMFKIVDQHGRFLMDGYKSANDALKKPDKPVIAKDNKNSARGRG 509
Query: 308 G------------GSGSGGS----DIFKIVKMI---MERKFQPVIVFSFSRRECEQHAMS 348
G GS S D V +I ++ PVIVF FS++ CE++ +
Sbjct: 510 AARGRGVQTNMMRGRGSAKSVERRDANTWVHLIGHLHKQNLLPVIVFVFSKKRCEEYVDT 569
Query: 349 MSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408
++ D N +EK V V + AV L +EDR LP I M +L RG+AVHH GLLP+IKE
Sbjct: 570 LTNRDLNNHQEKSEVHVVIEKAVARLKKEDRLLPQIGRMREMLSRGLAVHHGGLLPIIKE 629
Query: 409 LVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAG 468
+VE+LFQ GLVK LFATETFAMG+NMPAK+VVF+ +K DG + R + GEY Q SGRAG
Sbjct: 630 IVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRNFRDLLPGEYTQCSGRAG 689
Query: 469 RRGKDDRGICIIMVDEQM-EMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAE 527
RRG D G II+ ++ + +L+ M++G + L+S FRL+Y ILNL+ R E E
Sbjct: 690 RRGLDVTGTVIILSRSELPDTASLRHMIMGPSSKLISQFRLTYNMILNLL-RVE-TLRIE 747
Query: 528 HVIKNSFHQFQYEKALPDIGKKVSKLEEEAASL 560
+IK SF + + +P +K+ EE+ ++L
Sbjct: 748 DMIKRSFSENVNQTLVPQHEEKIKSFEEKLSAL 780
Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 138/261 (52%), Gaps = 3/261 (1%)
Query: 697 KIEDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQ 755
K+ D E + + L++KL +P+ + + ++ E+ I L S + D
Sbjct: 954 KVRDFEFCEAFEKRNFLQNKLSGNPIISTPNFLTHFALAYQEYELESNIDNLSSYISDQN 1013
Query: 756 IQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHH 815
++ D + R +VL++LG+IDA+ V LKGR AC I++ EL++TEL+ + D
Sbjct: 1014 LELLPD-YEQRIKVLQELGYIDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCE 1072
Query: 816 QVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECK-LEVNVDEYVEST 874
+ AL S F+ +K+ + + L K + + A K+ +IQ + L N ES
Sbjct: 1073 ETIALLSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVNQIQEHYQVLYFNEGNDFESQ 1132
Query: 875 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 934
R LM+V Y W++G +F + +TD+ EGSI+R+ RLDE L + R AA+ VG+ ++
Sbjct: 1133 PRFGLMEVCYEWARGMSFNRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYT 1192
Query: 935 KFAAASESLRRGIMFSNSLYL 955
K +RR I+F SLY+
Sbjct: 1193 KMEECQNLIRRNIVFCPSLYM 1213
>sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3
SV=1
Length = 906
Score = 320 bits (820), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 269/912 (29%), Positives = 439/912 (48%), Gaps = 64/912 (7%)
Query: 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134
F LD FQ+ + + LER VLV A T AGKT V E+A+ +A + YT+PLKALSNQ
Sbjct: 16 FSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPLKALSNQ 75
Query: 135 KYRELHQEF--KDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
K+ +L + +GL+TGD++++ NA +VMTTE+LR MLY S L+ +++V+ DE+H
Sbjct: 76 KHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGLSYVVMDEVH 135
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
++ DR RG VWEE I+ LP +++V LSAT+SNA +F WI + + VV + RP P
Sbjct: 136 FLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTV-RGDTTVVVDEHRPVP 194
Query: 253 LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGK-ASGRMAKGGSG 311
L +V G ++ + D + E + L + I RRE + A + + GSG
Sbjct: 195 LWQHVLV--GKRMFDLFDYR--IGEAEGQPQVNRELLRHIAHRREADRMADWQPRRRGSG 250
Query: 312 SGG----SDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSM--SKLDFNTQEEKDTVEQ 365
G +++ + P I F FSR C+ S L ++EE+ + +
Sbjct: 251 RPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAE 310
Query: 366 VFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFAT 425
V + L + D + L RG+A HH+G+LP + VE LF GLVKA+FAT
Sbjct: 311 VIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKAVFAT 370
Query: 426 ETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485
ET A+G+NMPA+TVV + K++G+ H + GEY Q++GRAGRRG D G +++ +
Sbjct: 371 ETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPE 430
Query: 486 MEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQYEKALPD 545
+E + + + + PL S+F SY +NL+ R G A +++ SF Q+Q ++++
Sbjct: 431 IEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRM-GPQQAHRLLEQSFAQYQADRSVVG 489
Query: 546 IGKKVSK----LEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPER------V 595
+ + + + L E AA L S +A + EY +L+ +++LE+ + +R +R
Sbjct: 490 LVRGIERGNRILGEIAAELGGS-DAPILEYARLRARVSELERA-QARASRLQRRQAATDA 547
Query: 596 LYYLGSGRLIKVREGGTDWGWGVVVNVVK---KPSAGVGTLPSRGGGYIVPVQLPLISTL 652
L L G +I + G G VV+ + P V T R G I + +
Sbjct: 548 LAALRRGDIITITHGRRG-GLAVVLESARDRDDPRPLVLT-EHRWAGRISSADYSGTTPV 605
Query: 653 SKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDM-KIEDPEVVDLVNQIE 711
+ L + R R+ + A++ + +P V + DPE +E
Sbjct: 606 GSMTLPKRVEHRQPRVRRDLASALRSAAAGLV--IPAARRVSEAGGFHDPE-------LE 656
Query: 712 ELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVL 770
+L HP++ S E+QIR +R + + QL+ K+ + +L
Sbjct: 657 SSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKV-AAATNSLARTFDRFVGLL 715
Query: 771 KKLGHIDA---DGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPV 827
+ ID D VV GR I + +LLV E + G + L ++A + S +
Sbjct: 716 TEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYE 775
Query: 828 DKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP--FLMDVIYC 885
+ + P +L+++ + + + + + S P + VIY
Sbjct: 776 TRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSR-EPDDGFVRVIYR 834
Query: 886 WSKGATFAEVIQMTDI-------FEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAA 938
WS+ A + D+ G +R R++ + L+Q+R AA N E + A
Sbjct: 835 WSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAP-----NPELRATA 889
Query: 939 --ASESLRRGIM 948
A +RRG++
Sbjct: 890 KRAIGDIRRGVV 901
>sp|Q9ZBD8|HELY_MYCLE Probable helicase HelY OS=Mycobacterium leprae (strain TN) GN=helY
PE=3 SV=1
Length = 920
Score = 305 bits (782), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 269/937 (28%), Positives = 439/937 (46%), Gaps = 100/937 (10%)
Query: 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134
F LD FQ+ + A LER VLV A T AGKT V E+A+ +A + YT+PLKALSNQ
Sbjct: 16 FSLDDFQQRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPLKALSNQ 75
Query: 135 KYRELHQEF--KDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
KY +L + +GL+TGD +++ ++ +VMTTE+LR MLY S L+ ++ V+ DE+H
Sbjct: 76 KYTDLTARYGRNRIGLLTGDQSVNGDSPVVVMTTEVLRNMLYADSFALQGLSHVVMDEVH 135
Query: 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP 252
++ DR RG VWEE I+ LP ++MV LSAT+SNA +F W+ + + VV + RP P
Sbjct: 136 FIADRMRGPVWEEVILHLPDDVRMVSLSATVSNAEEFGGWVQTV-RGDTTVVVDEHRPVP 194
Query: 253 LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKAS---GRMAKGG 309
L +V G L+ + D + + L + I RE + S + G
Sbjct: 195 LWQHVLV--GKRLFDLFDYDSNVDQSPV----NPNLLRHIAHCREADRMSDWRNPRRRAG 248
Query: 310 SGSGGSDIF-------KIVKMIMERKFQPVIVFSFSRRECEQHAMSM--SKLDFNTQEEK 360
GSG F +++ ++ P I F FSR C+ S L ++EE+
Sbjct: 249 RGSGVRPRFYRSLARPEVIAILDAEGLLPAITFVFSRFGCDAAVQQCLRSPLRLTSEEER 308
Query: 361 DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVK 420
+ +V + L + D + L RG+A HH+G+LP + VE LF GLVK
Sbjct: 309 AQIAEVIDHRCGDLADADLAVLGYYEWREGLLRGLAAHHAGMLPAFRHAVEELFTAGLVK 368
Query: 421 ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICII 480
A+FATET A+G+NMPA+TVV + K++G H + GEY Q++GRAGRRG D G ++
Sbjct: 369 AVFATETLALGINMPARTVVLERLVKFNGKQHVPLTPGEYTQLTGRAGRRGIDVEGHAVV 428
Query: 481 M---VDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQF 537
+ ++ + + + + PL S+F SY +NL+ + A +++ SF Q+
Sbjct: 429 IWHPSEDTSGPSAVAGLASARTFPLRSSFVPSYNMTINLVHWMSPE-RAHALLEQSFAQY 487
Query: 538 QYEKALPDIGKKVSKLEE---EAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPER 594
Q ++++ + + + + + + +S +A + EY +L+ IA++E+ S + R +R
Sbjct: 488 QADRSVVGLVRGIERCTQVLGDISSELGGPDAPILEYARLRARIAEMERA-QSFVFRLQR 546
Query: 595 ------VLYYLGSGRLIKVREGGTDWGWGVVVNVVK---KPSAGVGTLPSRGGGYIVPVQ 645
VL L G +I + G G VV+ + P V T G
Sbjct: 547 KQAANDVLAALRRGDIITITH-GRHGGLAVVLESARDSSNPRPLVLTEHRWAGRISSADY 605
Query: 646 LPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNP--------VKDMK 697
+ + + + L + R R+ + A++ +R +P + D
Sbjct: 606 MGAAAPVGSMTLPKRVEHRQQRVRRDLASALRSAATRL--SVPDIGDGVDGDKIGFNDGV 663
Query: 698 IEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 757
+ DPE+ L Q+ H+ P +Q + R + R N ++Q+ + +S +
Sbjct: 664 LHDPELASLRAQLR--RHRSNNAPGLDTQLQQAER-YLRIERYNAQLQRKVAAATNSLAR 720
Query: 758 KFRDELKNRSRVLKKL-------GHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFN 810
F R++ L G D D V GR I + +LLV E + G +
Sbjct: 721 TF-------DRIVGLLIERDFIRGPAD-DPQVTDDGRLLARIYSESDLLVAECLRTGAWA 772
Query: 811 DLDHHQVAALASCFI-----------PVDKSSEQINLRMELAKPLQQLQESARKIAEIQ- 858
L ++AA+ S + PVD + LR Q LQ ++R A ++
Sbjct: 773 GLRPAELAAVVSAVLYETRGDDGPGGPVDAEAPTPRLR-------QALQHTSRLSATLRA 825
Query: 859 NECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQM-------TDIFEGSIIRSAR 911
+E + + + + + VIYCW++ A V+ + G +R R
Sbjct: 826 DEQRHRIALSREPDDG----FVGVIYCWARTGDLAAVLAAADASGNGAPLSAGDFVRWCR 881
Query: 912 RLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIM 948
++ + L+QLR AA E +L A +RRG++
Sbjct: 882 QVLDLLDQLRNAAP---EPDLRATAKRAINDVRRGVV 915
>sp|B9DFG3|ISE2_ARATH DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic
OS=Arabidopsis thaliana GN=ISE2 PE=1 SV=2
Length = 1171
Score = 265 bits (677), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 173/489 (35%), Positives = 251/489 (51%), Gaps = 51/489 (10%)
Query: 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127
E+ Y F +D FQR+++ R SV+VSA TS+GKT +AE A +R+ YT+P
Sbjct: 146 ELISIYDFRIDKFQRLAIEAFLRGSSVVVSAPTSSGKTLIAEAAAVSTVAKGRRLFYTTP 205
Query: 128 LKALSNQKYRELHQEFKD--VGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEV------ 179
LKALSNQK+RE + F D VGL+TGD ++ +A ++MTTEILR MLY+ +
Sbjct: 206 LKALSNQKFREFRETFGDDNVGLLTGDSAINKDAQIVIMTTEILRNMLYQSVGMASSGTG 265
Query: 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQ 239
L V ++ DE+HY+ D RG VWEE +I+ P ++++ LSAT++N + A WI +H +
Sbjct: 266 LFHVDAIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGEIHGK 325
Query: 240 PCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEK----EQFREDNFVKLQDT---FLKQKI 292
+V + RP PL Y F S L L +DEK + N+++L + F
Sbjct: 326 -TELVTSTRRPVPLTWY-FSTKHSLLPL-LDEKGINVNRKLSLNYLQLSASEARFRDDDD 382
Query: 293 GGRRENGKASGRMAKGGSGS------------GGSDIFKIVKM-----------IMERKF 329
G R+ K +GG S ++I KI + + +
Sbjct: 383 GYRKRRSK-----KRGGDTSYNNLVNVTDYPLSKNEINKIRRSQVPQISDTLWHLQGKNM 437
Query: 330 QPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLP 389
P I F F+RR C+ + EK VE + + R L+
Sbjct: 438 LPAIWFIFNRRGCDAAVQYVENFQLLDDCEKSEVELALKKFRVLYPDAVRESAEKGLL-- 495
Query: 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449
RGIA HH+G LP+ K +E LFQ GLVK +FATET A G+NMPA+T V +++ K G
Sbjct: 496 ---RGIAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAG 552
Query: 450 DSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLS 509
+ +G E QM+GRAGRRG D++G +++ +V PLVS F S
Sbjct: 553 NERIELGPNELYQMAGRAGRRGIDEKGYTVLVQTAFEGAEECCKLVFAGVKPLVSQFTAS 612
Query: 510 YYSILNLMS 518
Y +LNL++
Sbjct: 613 YGMVLNLVA 621
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain
ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta0835 PE=3 SV=1
Length = 674
Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 131/444 (29%), Positives = 215/444 (48%), Gaps = 81/444 (18%)
Query: 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134
F+L QR+++ + + +V+VS T+AGKT +A AI F+ + IY PL++L+ +
Sbjct: 21 FQLYDHQRMAIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRNLKSIYIVPLRSLAME 80
Query: 135 KYRELHQEFKDVGLMT----GDVTLSPN----ASCLVMTTEILRGMLYRGSEVLKEVAWV 186
K+ EL + +D+GL GD SP+ +++T+E +L+ +L +V +
Sbjct: 81 KFSELSR-LRDLGLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSLLHHDPYILNDVGLL 139
Query: 187 IFDEIHYMKDRERGVVWEE--SII-FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHV 243
+ DEIH + D RG E SI ++ P ++++ LSAT+SNA + A W+ +
Sbjct: 140 VLDEIHTIGDESRGPTLETVASIARYVNPDVRILALSATVSNAMELASWL------DASL 193
Query: 244 VYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASG 303
+ +DFRP PL+ + LY ++Q D G+R +G +
Sbjct: 194 IKSDFRPVPLKTGI-------LY-----RDQLYLD---------------GKRRSGVS-- 224
Query: 304 RMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL---DFNTQEEK 360
I +I++ +E Q V++F SR++ E A ++++ D N +
Sbjct: 225 -------------INQIIRETVEDNGQ-VLMFVSSRKKAEDTARDLAQIFGSDANIKISS 270
Query: 361 DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVK 420
D V+ D LNE +L RG+A HH+GL + +E F+ +K
Sbjct: 271 DET-NVYD---DMLNE-------------ILPRGVAFHHAGLSNDQRAFIEREFRARRIK 313
Query: 421 ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICII 480
+ AT T A G+N+PA+ V+ + +W D Y+ + E QM GRAGR G D GI +I
Sbjct: 314 VIVATPTLAAGVNLPARLVIVRDITRWGSDGISYLTNMEIKQMIGRAGRPGYDQYGIGLI 373
Query: 481 MVDEQMEMNTLKDMVLGKPAPLVS 504
V Q KD + P P+VS
Sbjct: 374 YVSSQSSYEAAKDYLSTDPEPVVS 397
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 132/446 (29%), Positives = 217/446 (48%), Gaps = 81/446 (18%)
Query: 76 ELDPFQRVSVA-CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ-RVIYTSPLKALSN 133
+L+P Q +V L ++ +L++ T++GKT +AE + +K + IY +PL+AL++
Sbjct: 26 KLNPPQTEAVKKGLIEDKRLLITTPTASGKTLMAELGMISHLLNKGGKAIYVTPLRALTS 85
Query: 134 QKYRELHQEFKD-------VGLMTGDV-TLSP---NASCLVMTTEILRGMLYRGSEVLKE 182
+KY FKD VG+ +GD T P N +V T E L + +E LK+
Sbjct: 86 EKY----STFKDWEKLGFKVGVTSGDYDTDDPWLRNFDIIVTTYEKLDSLWRHSAEWLKD 141
Query: 183 VAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCH 242
+ + + DE HYM D +RG V E + ++ LSAT+ NA A+W+
Sbjct: 142 IDYFVLDEFHYMNDGDRGPVVEGVAVRAKRQGTILALSATIGNAKDVAKWLN------AD 195
Query: 243 VVYTDFRPTPLQHYV-FPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKA 301
+V T++RP PL+ V + G G ++ + N +K D + +
Sbjct: 196 IVATNWRPVPLKEGVMYSEGKKGHIILYSDGTT----NKLKGDDPIIAYTLD-------- 243
Query: 302 SGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK-LDFNTQEEK 360
++KGG VIVF SR+ E AM +S+ ++F ++K
Sbjct: 244 --ILSKGGQ---------------------VIVFRSSRKYAETTAMKISQYMNFVKLDDK 280
Query: 361 DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVK 420
++ + A ED E++ L+ RG+A HH+GL +++++E F+E ++K
Sbjct: 281 ----KLLETAERIKEVEDAGSNEKEVLYNLIVRGVAFHHAGLSKGLRDIIEASFRERIIK 336
Query: 421 ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY----------IGSGEYIQMSGRAGRR 470
+ AT T A G+N+PA+ VV GD +R+ I + EY QMSGRAGR
Sbjct: 337 VITATPTLAAGVNLPARAVVI-------GDIYRFNRKIVGFTEMISTMEYRQMSGRAGRP 389
Query: 471 GKDDRGICIIMVDEQMEMNTLKDMVL 496
G D+ G II+V ++E++ + D L
Sbjct: 390 GYDNHGEAIILVRSKVEVDKVIDKYL 415
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 147/559 (26%), Positives = 251/559 (44%), Gaps = 97/559 (17%)
Query: 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134
FEL QR+++ + ++++VS T+AGKT +A AI F+ K + IY PL++L+ +
Sbjct: 21 FELYDHQRMAIEQFRKGKNIMVSVPTAAGKTLIAYSAIYETFKKKLKSIYIVPLRSLAME 80
Query: 135 KYRELHQEFKDVG----LMTGDVTLSPN----ASCLVMTTEILRGMLYRGSEVLKEVAWV 186
KY EL + +++G L G+ +P+ +++T+E +++ +++EV +
Sbjct: 81 KYEELSR-LRELGMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHHDPYMMEEVGLM 139
Query: 187 IFDEIHYMKDRERGVVWEESII---FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHV 243
+ DEIH + D RG E I ++ P +++ LSAT+SNA++ AEW+ +
Sbjct: 140 VIDEIHMIGDEYRGPTLETVITTARYVNPETRIIALSATVSNASEIAEWLN------ASL 193
Query: 244 VYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASG 303
+ + FRP PL K+G N
Sbjct: 194 IKSSFRPVPL-------------------------------------KVGILYRN----- 211
Query: 304 RMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL-----DFNTQE 358
R+ G DI +VK ++ Q V++F SR+ E A ++S+L D
Sbjct: 212 RLFLDGDARSDVDINLLVKETVDDGGQ-VLIFVSSRKRAEDMAKNLSQLFDPINDLKVSS 270
Query: 359 EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGL 418
E V D LNE MLP G++ HH+GL + +E F+
Sbjct: 271 EDANVYD------DLLNE----------MLP---HGVSFHHAGLSNEQRSFIEKAFRHRK 311
Query: 419 VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGIC 478
+K + AT T A G+N+PA+ V+ V ++ Y+ + E QM GRAGR G D GI
Sbjct: 312 LKVIVATPTLAAGVNLPARLVIVKDVTRYGDLGITYLSNMEVKQMIGRAGRPGYDQYGIG 371
Query: 479 IIMVDEQMEMNTLKDMVLGKPAPLVSTF----RLSYYSILNL-MSRAEGQFTAEHVIKNS 533
II +K+ + +P P+ S ++ + ++ + M A Q E +++
Sbjct: 372 IIYAASANSYQVVKEYISEEPEPVDSYIGKPEKVRFNTLAAIAMGLATSQVEMEEFYRST 431
Query: 534 FHQFQY-EKALPD-IGKKVSKLEE-----EAASLDASGEAEVAEYHKLKLDIAQLEKKLM 586
F+ Q E +P+ I + + L+E E SL A+ ++ + + A + KK
Sbjct: 432 FYYAQNGEDEIPNRINESIKFLKENGFIKEKDSLRATEFGKMISNLYIDPESAIILKKYF 491
Query: 587 SEITRPERVLYYLGSGRLI 605
+ + LYY+ R I
Sbjct: 492 DDNDDIDTALYYISLCREI 510
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 139/493 (28%), Positives = 235/493 (47%), Gaps = 83/493 (16%)
Query: 76 ELDPFQRVSV--ACLERNESVLVSAHTSAGKTAVAEYAI-AMAFRDKQRVIYTSPLKALS 132
+L+P Q +V L+ N +L+++ T +GKT +AE I + ++ + IY +PL+AL+
Sbjct: 23 KLNPPQTEAVKKGLLDGNR-LLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALT 81
Query: 133 NQKYRELHQEFKD-------VGLMTGDVTLS----PNASCLVMTTEILRGMLYRGSEVLK 181
N+KY FKD V + +GD N ++ T E L + + L
Sbjct: 82 NEKY----LTFKDWESIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPDWLN 137
Query: 182 EVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPC 241
E + + DE+HY+ D ERG V ES+ ++ LSAT+SN Q A+W L +P
Sbjct: 138 EANYFVLDELHYLNDPERGPV-VESVTIRAKRRNLLALSATISNYKQIAKW---LGAEP- 192
Query: 242 HVVYTDFRPTPLQHYV-FPVGGSGLYLVVDEKEQFREDNFVKLQ--DTFLKQKIGGRREN 298
V T++RP PL V +P Y ++ FR++ K+ D + + +N
Sbjct: 193 --VATNWRPVPLMEGVMYPERKKKEYTIL-----FRDNTARKVHGDDAIIAYTLDSLSKN 245
Query: 299 GKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK-LDFNTQ 357
G+ V+VF SR+ E A+ ++ ++F +
Sbjct: 246 GQ-------------------------------VLVFRNSRKMAESTALKIANYMNFVSL 274
Query: 358 EEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEG 417
+EK + ++ + D E+ EL+ L+ +G+A HH+GL +++++E F++
Sbjct: 275 DEK-AISEILKQLDDI---EEGGSDEKELLKSLISKGVAYHHAGLSKALRDIIEESFRKR 330
Query: 418 LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY---IGSGEYIQMSGRAGRRGKDD 474
+K + AT T A G+N+PA+TV+ + +++ Y I EY QMSGRAGR G D
Sbjct: 331 KIKVIVATPTLAAGVNLPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQ 390
Query: 475 RGICIIMVDEQMEMN-TLKDMVLGKPAPLVSTF---RLSYYSILNLMSRAEGQFTAEHVI 530
G II+V ++ +++ K +L P+ S R Y +L ++S AEG + + +
Sbjct: 391 IGESIIVVRDKEDVDRVFKKYILSDVEPIESKLGSERAFYTFLLGILS-AEGSLSEKQL- 448
Query: 531 KNSFHQFQYEKAL 543
F YE L
Sbjct: 449 ----EAFAYESLL 457
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3
SV=1
Length = 704
Score = 144 bits (362), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 127/462 (27%), Positives = 217/462 (46%), Gaps = 78/462 (16%)
Query: 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQ-RVIYTSPLKALSNQKYRELHQEFKDVGLMTG- 151
+LV++ T++GKT +AE + K + IY +PL+AL+N+KY ++++ +G+ TG
Sbjct: 45 LLVTSPTASGKTLIAELGMINYLLSKGGKAIYITPLRALTNEKYNTF-KDWETLGIKTGM 103
Query: 152 -------DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204
D N +V T E L + ++ L EV++ + DE HY+ D ERG E
Sbjct: 104 TSGDYDTDDAWLENYDIIVTTYEKLDSLWRHKAKWLNEVSYFVLDEFHYLNDPERGPTVE 163
Query: 205 ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQH-YVFPVGGS 263
I ++ LSAT+SN + A W+ +V T++RP PL+ ++P
Sbjct: 164 SVAIRAKKRGIVLGLSATISNGKEIANWLN------AELVATNWRPVPLKEGIIYP---- 213
Query: 264 GLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKM 323
EK+ F V +D ++ G ++KGG
Sbjct: 214 -------EKKGF----VVVYKDNTSRKVYGDDAIIAYTLDIVSKGGQ------------- 249
Query: 324 IMERKFQPVIVFSFSRRECEQHAMSMSK-LDFNTQEEKDTVEQVFQNAVDCLNEEDRNLP 382
V+VF SR+ E A + + ++F E+K ++ + A ED
Sbjct: 250 --------VLVFRSSRKLAENTARKIVQYMNFVKLEDK----KLLEIARKIKEVEDAGSN 297
Query: 383 AIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 442
E + L+ RG+A HH+GL +++++E F++ ++K + AT T A G+N+PA+ VV
Sbjct: 298 EKEDLYNLVLRGVAYHHAGLSKGLRDIIESSFRDRILKVIVATPTLAAGVNLPARAVVI- 356
Query: 443 AVKKWDGDSHRY----------IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLK 492
GD +RY I +Y QMSGRAGR G D+ G +++V + E +
Sbjct: 357 ------GDIYRYNRKVVGYMDLIPVMDYKQMSGRAGRPGFDENGEAVVVVRNKREAEKVY 410
Query: 493 D-MVLGKPAPLVSTF--RLSYYSILNLMSRAEGQFTAEHVIK 531
+ ++ P+ S ++YS L + +EG+ T E +++
Sbjct: 411 ERYLMSDVEPIESKLGSESAFYSFLISIIASEGEKTTEELME 452
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 120/425 (28%), Positives = 197/425 (46%), Gaps = 68/425 (16%)
Query: 86 ACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRE---LHQ 141
A +E+ E+++V+A T +GKT +A AI + R R Y PLK+++ +KY L +
Sbjct: 38 AGVEKGENLVVAAPTGSGKTFIALVAIVNSLARAGGRAFYLVPLKSVAYEKYTSFSILSR 97
Query: 142 EFKDVGLMTGDVTLSP-NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG 200
+ + GD P A ++ T E +L + + V+ +I DEIH + D +RG
Sbjct: 98 MGLKLKISVGDFREGPPEAPVVIATYEKFDSLLRVSPSLARNVSVLIVDEIHSVSDPKRG 157
Query: 201 VVWEESII--FLPPA--IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHY 256
+ E SI+ L A ++V LSAT+ NA + AEWI +V + +RP PL+ Y
Sbjct: 158 PILE-SIVSRMLASAGEAQLVGLSATVPNAGEIAEWIG------GKIVESSWRPVPLREY 210
Query: 257 VFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASG----RMAKGGSGS 312
VF ++ L GG RE + G +A
Sbjct: 211 VF-------------------------KEYKLYSPTGGLREVPRVYGLYDLDLAAEAIED 245
Query: 313 GGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVD 372
GG +VF++SRR A++++K + + + + +
Sbjct: 246 GGQ----------------ALVFTYSRR----RAVTLAKRAAKRLGRRLSSREARVYSAE 285
Query: 373 CLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGL 432
E E + L+ GIA HH+GL P +++ VE F+ G VK +++T T A G+
Sbjct: 286 ASRAEGAPRSVAEELASLIAAGIAYHHAGLPPSLRKTVEEAFRAGAVKVVYSTPTLAAGV 345
Query: 433 NMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLK 492
N+PA+ VV + +++ I EY QM+GRAGR G D+ G II+ + ++ +
Sbjct: 346 NLPARRVVIDSYYRYEAGFREPIRVAEYKQMAGRAGRPGLDEFGEAIIVAE---RLDRPE 402
Query: 493 DMVLG 497
D++ G
Sbjct: 403 DLISG 407
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 127/435 (29%), Positives = 196/435 (45%), Gaps = 72/435 (16%)
Query: 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQ-RVIYTSPLKALSNQKYRELHQEFKD----- 145
E++LV+ T++GKT +AE AIA ++ + +Y PLKAL+ +K+RE FKD
Sbjct: 40 ENLLVAIPTASGKTLIAEIAIANKLLEEGGKAVYIVPLKALAEEKFRE----FKDWERLG 95
Query: 146 --VGLMTGDVTLSP----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER 199
V + TGD ++ T E +L GS +++V ++ DEIH + R+R
Sbjct: 96 LKVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIRDVKMLVIDEIHLIGSRDR 155
Query: 200 GVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFP 259
G E I + +++ LSAT+ N + AEW+ ++ +D+RP L+ VF
Sbjct: 156 GATLEFIITQMLGRAQIIGLSATIGNPEELAEWLN------AKLIRSDWRPVKLRKGVFY 209
Query: 260 VGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFK 319
G FV +D G R N S ++
Sbjct: 210 QG------------------FVFWEDG------GSERYN-------------SWEELVYD 232
Query: 320 IVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDR 379
VK K + +VF RR+ E+ A+ ++K N + K+ E + + L E
Sbjct: 233 AVK-----KGKGALVFVNMRRKAEKTALELAKKVKNYLDRKELRE--LRELAESLEEN-- 283
Query: 380 NLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTV 439
P E + L G+A HH+GL + LVE F++GL+K + AT T + G+N PA V
Sbjct: 284 --PTNEKLAKALLSGVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRV 341
Query: 440 VFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKP 499
+ ++ I E QM GRAGR D+ G II+ + + + GKP
Sbjct: 342 IIRDTWRYSEFGMERIPVLEVQQMMGRAGRPRYDEVGEAIIVSTTEEPSLVIDHYIKGKP 401
Query: 500 APLVSTFRLSYYSIL 514
L S +LS SIL
Sbjct: 402 EKLFS--QLSNESIL 414
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 120/426 (28%), Positives = 191/426 (44%), Gaps = 70/426 (16%)
Query: 76 ELDPFQRVSVAC--LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSN 133
EL+P QR ++ LE ++ +++ T++GKT + A + RVIYT PL ++ N
Sbjct: 21 ELNPAQRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALKTVMEGGRVIYTVPLLSIQN 80
Query: 134 QKYRELHQEFKDVGLMTGDVTLSPNASCL-VMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192
+K +E ++ ++ G+ G P S + VM E + +L+EV +I DE H
Sbjct: 81 EKIKEF-RKLEEHGIRVGK---DPRTSDIAVMVFESFDSLTRFSWNILREVDLLIVDEFH 136
Query: 193 YMKDRERGVVWEESII---FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR 249
+ + RG V E +I L P++++V LSAT+SN + A W+ VV D+R
Sbjct: 137 MIGEYTRGPVIESAITRARTLNPSVRIVALSATLSNMDEIAGWL------DARVVEHDYR 190
Query: 250 PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGG 309
P PL V G+ RE N V
Sbjct: 191 PVPLHREVLDTEMFGV----------REKNDV---------------------------- 212
Query: 310 SGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN 369
+ K+++ +E Q + F +RR E A ++ + + D VE +
Sbjct: 213 -------VLKVLERSLEDGSQ-TLAFVSTRRFTESLASHLAD-KISGKIPDDMVESFREV 263
Query: 370 AVDCLN-EEDRNLPAIELMLPL---LKRGIAVHHSGLLPVIKELVELLFQEGLVKALFAT 425
A L + R P L L L+ GIA HH+GL +E++E F++G + + AT
Sbjct: 264 AGKVLEVPKSRGSPPTSTCLKLAECLEAGIAFHHAGLFNRQREIIEDEFRDGNILMITAT 323
Query: 426 ETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMV--- 482
+ G+N+P++TVV +W R I +Y QMSGRAGR DD G ++
Sbjct: 324 PSLMYGVNLPSRTVVIRDYTRWTSQGPRRIPVFDYEQMSGRAGRPQYDDAGYSYLIARSH 383
Query: 483 DEQMEM 488
DE M++
Sbjct: 384 DEAMDL 389
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 118/431 (27%), Positives = 202/431 (46%), Gaps = 71/431 (16%)
Query: 76 ELDPFQRVSV-ACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134
EL P Q +V L +++L + T++GKT +AE A+ + + +Y PL+AL+++
Sbjct: 23 ELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVLAGGKALYIVPLRALASE 82
Query: 135 KYRELHQEFKDVGLMTG---------DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAW 185
K+R Q+F ++G+ G D L N +V T+E +L + ++E++
Sbjct: 83 KFRRF-QDFSELGIRVGISTGDYDRRDEGLGIN-DIIVATSEKTDSLLRNETAWMQEISV 140
Query: 186 VIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSATMSNATQFAEWICHLHKQPCH 242
V+ DE+H + +RG E ++ L P +++ LSAT+ NA + A W+
Sbjct: 141 VVVDEVHLIDSADRGPTLEVTLAKLRKMNPFCQILALSATVGNADELAAWL------DAE 194
Query: 243 VVYTDFRPTPLQHYVFPVGGSGLYLVVDEK---EQFREDNFVKL-QDTFLKQKIGGRREN 298
+V +++RPT L VF G + D++ EQ +D + L DT RE
Sbjct: 195 LVLSEWRPTDLMEGVF---FDGTFFCKDKEKLIEQPTKDEAINLVLDTL--------REG 243
Query: 299 GKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQE 358
G+ +VF SR+ C A + T
Sbjct: 244 GQC-------------------------------LVFESSRKNCMGFAKKATSAVKKTLS 272
Query: 359 EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGL 418
+D E++ A + L + + ++ + ++ G A HH+GL ++ELVE F+EG
Sbjct: 273 AEDK-EKLAGIADEILENSETDTASV--LASCVRAGTAFHHAGLTSPLRELVETGFREGY 329
Query: 419 VKALFATETFAMGLNMPAKTVVFTAVKKWDGDS-HRYIGSGEYIQMSGRAGRRGKDDRGI 477
VK + +T T A GLN+PA+ V+ + +++ DS + I EY QM+GRAGR D G
Sbjct: 330 VKLISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPRLDPYGE 389
Query: 478 CIIMVDEQMEM 488
+++ E+
Sbjct: 390 AVLLAKSYEEL 400
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 128/467 (27%), Positives = 213/467 (45%), Gaps = 79/467 (16%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFKDVG 147
++ L+S T++GKT +AE IAM R + +Y PLKAL+ +K++E Q+++ +G
Sbjct: 39 GKNALISIPTASGKTLIAE--IAMVHRILTQGGKAVYIVPLKALAEEKFQEF-QDWEKIG 95
Query: 148 L----MTGDVTLSP----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER 199
L TGD ++ T E +L GS +K+V ++ DEIH + R+R
Sbjct: 96 LRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155
Query: 200 GVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFP 259
G E + + +++ LSAT+ N + AEW+ ++ +D+RP L+ VF
Sbjct: 156 GATLEVILAHMLGKAQIIGLSATIGNPEELAEWLN------AELIVSDWRPVKLRRGVFY 209
Query: 260 VGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFK 319
G FV +D GS S +
Sbjct: 210 QG------------------FVTWED-----------------------GSIDRFSSWEE 228
Query: 320 IVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDR 379
+V + RK + ++F RR+ E+ A+ +SK + K + + A++ L +
Sbjct: 229 LVYDAI-RKKKGALIFVNMRRKAERVALELSK------KVKSLLTKPEIRALNELADSLE 281
Query: 380 NLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTV 439
P E + ++ G+A HH+GL + LVE F++G++KA+ AT T + G+N PA V
Sbjct: 282 ENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRV 341
Query: 440 VFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKP 499
+ + ++ I E QM GRAGR D+ G II+ + + GKP
Sbjct: 342 IIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKP 401
Query: 500 APLVSTFRLSYYS-----ILNLMSRAEGQFTAEHVIK---NSFHQFQ 538
L S +LS S +L L++ G T E ++K N+F+ +Q
Sbjct: 402 EKLFS--QLSNESNLRSQVLALIATF-GYSTVEEILKFISNTFYAYQ 445
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain
DSM 6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/423 (27%), Positives = 203/423 (47%), Gaps = 69/423 (16%)
Query: 76 ELDPFQR--VSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSN 133
EL P Q + + LE+ +++L + T++GKT +AE A+ A R+ + +Y PL+AL++
Sbjct: 23 ELYPPQAEAIEMGLLEK-KNLLAAIPTASGKTLLAELAMIKAIREGGKALYIVPLRALAS 81
Query: 134 QK---YRELHQEFKDVGLMTGDVTLSPN----ASCLVMTTEILRGMLYRGSEVLKEVAWV 186
+K ++EL VG+ TGD+ + +V T+E +L G+ + E+ V
Sbjct: 82 EKFERFKELAPFGIKVGISTGDLDSRADWLGVNDIIVATSEKTDSLLRNGTSWMDEITTV 141
Query: 187 IFDEIHYMKDRERGVVWEESI---IFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHV 243
+ DEIH + + RG E +I + L P +++V LSAT+ NA + A+W+ +
Sbjct: 142 VVDEIHLLDSKNRGPTLEVTITKLMRLNPDVQVVALSATVGNAREMADWLG------AAL 195
Query: 244 VYTDFRPTPLQHYVFPVGGSGLYLVVDEK--EQFREDNFVKL-QDTFLKQKIGGRRENGK 300
V +++RPT L V + G + +K ++ +D+ V L DT K
Sbjct: 196 VLSEWRPTDLHEGV--LFGDAINFPGSQKKIDRLEKDDAVNLVLDTI------------K 241
Query: 301 ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360
A G+ +VF SRR C A + S +
Sbjct: 242 AEGQ---------------------------CLVFESSRRNCAGFAKTASSKVAKILDND 274
Query: 361 DTVEQV-FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLV 419
++ V+ E D + ++ +++G+A HH+GL ++LVE F++ L+
Sbjct: 275 IMIKLAGIAEEVESTGETDTAI----VLANCIRKGVAFHHAGLNSNHRKLVENGFRQNLI 330
Query: 420 KALFATETFAMGLNMPAKTVVFTAVKKWDGD-SHRYIGSGEYIQMSGRAGRRGKDDRGIC 478
K + +T T A GLN+PA+ V+ + +++D + + I EY QM+GRAGR D G
Sbjct: 331 KVISSTPTLAAGLNLPARRVIIRSYRRFDSNFGMQPIPVLEYKQMAGRAGRPHLDPYGES 390
Query: 479 IIM 481
+++
Sbjct: 391 VLL 393
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 120/434 (27%), Positives = 199/434 (45%), Gaps = 66/434 (15%)
Query: 90 RNESVLVSAHTSAGKTAVAEYAIA-MAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGL 148
+ E+ L++ T++GKT +AE AI ++ + +Y PLKAL+ +K++E ++++++GL
Sbjct: 38 KGENALIAIPTASGKTLIAEIAIVNRLLKEGGKAVYLVPLKALAEEKFKEF-KDWEELGL 96
Query: 149 ----MTGDVTLSP----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG 200
TGD ++ T E +L GS ++ V ++ DEIH + R+RG
Sbjct: 97 KVAMATGDYDSKDEWLGGYDIIIATAEKFDSLLRHGSSWIRNVKVLVVDEIHLIGSRDRG 156
Query: 201 VVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPV 260
E I + +++ LSAT+ N + AEW+ ++ +D+RP L+ VF
Sbjct: 157 ATLEFIITQMLNRAQIIGLSATIGNPEELAEWLN------AKLIKSDWRPVKLRRGVFYQ 210
Query: 261 GGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKI 320
G FV +D G+ K S ++
Sbjct: 211 G------------------FVFWED-----------------GKTEKFNSWE--ELVYDA 233
Query: 321 VKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRN 380
+K + + +VF RR+ E+ A+ +SK N +K+ E + + L E
Sbjct: 234 IK-----RSKGSLVFVNMRRKAEKTALELSKKIRNFLTKKELRE--LKELAESLEEN--- 283
Query: 381 LPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440
P E + L+ G+A HH+GL + LVE F++GL+K + AT T + G+N PA V+
Sbjct: 284 -PTNEKLAKALQGGVAFHHAGLGREERVLVEENFKKGLIKVVVATPTLSAGINTPAFRVI 342
Query: 441 FTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPA 500
++ I E QM GRAGR D+ G II+ + ++ + GKP
Sbjct: 343 VRDTWRYSEFGMERIPILEIQQMMGRAGRPKYDEVGEAIIVSTTEEPSTVMERYIKGKPE 402
Query: 501 PLVSTFRLSYYSIL 514
L S +LS SIL
Sbjct: 403 KLFS--QLSNESIL 414
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 117/427 (27%), Positives = 206/427 (48%), Gaps = 75/427 (17%)
Query: 75 FELDPFQRVSV-ACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSN 133
EL P Q +V L +++L + T++GKT +AE A+ + + + +Y PL+AL++
Sbjct: 22 LELYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVLNGGKALYIVPLRALAS 81
Query: 134 QKYRELHQEFK----DVGLMTGDVT-----LSPNASCLVMTTEILRGMLYRGSEVLKEVA 184
+K+R QEF VG+ TGD L N +V T+E +L + ++E++
Sbjct: 82 EKFRRF-QEFSVLGMRVGISTGDYDRRDEGLGIN-DIIVATSEKTDSLLRNETAWMQEIS 139
Query: 185 WVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSATMSNATQFAEWICHLHKQPC 241
V+ DE+H + +RG E ++ L P+ +++ LSAT+ NA + A W+
Sbjct: 140 VVVADEVHLIDSPDRGPTLEITLSKLRRMNPSCQVLALSATVGNADELAAWL------DA 193
Query: 242 HVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKE---QFREDNFVKLQDTFLKQKIGGRREN 298
+V +++RPT L VF +G++ D+++ Q +D V L +K+ GG+
Sbjct: 194 ELVLSEWRPTDLMEGVFY---NGIFYCKDKEKPVGQPTKDEAVNLVLDTIKE--GGQ--- 245
Query: 299 GKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRREC---EQHAMSMSKLDFN 355
+VF SR+ C + A+S K
Sbjct: 246 ---------------------------------CLVFESSRKNCMGFAKKAVSAVKKTL- 271
Query: 356 TQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQ 415
+ E+++T+ + + E+ ++ ++ G A HH+GL ++ELVE F+
Sbjct: 272 SNEDRETLAGIADEII-----ENSETDVSSVLATCVRSGTAFHHAGLTTPLRELVENGFR 326
Query: 416 EGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS-HRYIGSGEYIQMSGRAGRRGKDD 474
EG +K + +T T A GLN+PA+ V+ + +++ DS + I EY QM+GRAGR D
Sbjct: 327 EGRIKIISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQPIPVLEYKQMAGRAGRPRLDP 386
Query: 475 RGICIIM 481
G +++
Sbjct: 387 YGEAVLL 393
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 118/435 (27%), Positives = 199/435 (45%), Gaps = 72/435 (16%)
Query: 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151
ES++ S T++GKT VA+ A+ A +Y PL+AL+++K RE F++ GL G
Sbjct: 41 ESLVASVPTASGKTLVAQLAMLSAIDRGGTALYIVPLRALASEK-REEFAAFEEYGLSVG 99
Query: 152 DVTLS--------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203
T S + +V T+E + ++ G+ + ++ V+ DE+H + D RG
Sbjct: 100 VTTGSYEDTGEWLADKDIIVATSEKVDSLVRNGAPWIDDLDCVVADEVHLVDDEHRGPTL 159
Query: 204 EESIIFL---PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQ---HYV 257
E ++ L P +++V LSAT+ NA + AEW+ +V + +RP L+ HY
Sbjct: 160 EVTLAKLRRVNPNLQVVALSATVGNAGEMAEWL------DAELVDSSWRPIELRKGVHY- 212
Query: 258 FPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDI 317
G L+ +++ K + +++ + +GGS
Sbjct: 213 ----GQALHFGDGTQQELPVQRTEKPTEAVVRETLD-------------EGGS------- 248
Query: 318 FKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEE 377
+VF SRR E A ++K D ++ + A+ L EE
Sbjct: 249 --------------TLVFVNSRRNAEGAAKRLAKTTV------DGLDADERAALSSLAEE 288
Query: 378 DRNLPAIEL---MLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNM 434
R + E + +++G A HH+G + LVE F++ L+K + AT T A G+N
Sbjct: 289 IRAVSDTETSDDLADCVEQGAAFHHAGCSSEHRSLVEDAFRDRLIKTICATPTLAAGVNT 348
Query: 435 PAKTVVFTAVKKWDGDSH--RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLK 492
PA+ VV +++ GD+ + + E QM GRAGR G+D G +++ D E++ L
Sbjct: 349 PARRVVVRDWRRYSGDAGGMQPLSVLEVHQMMGRAGRPGRDPYGEAVLLADSHDELDELL 408
Query: 493 D-MVLGKPAPLVSTF 506
D V P P+ S
Sbjct: 409 DRYVWADPEPVESKL 423
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 113/421 (26%), Positives = 190/421 (45%), Gaps = 66/421 (15%)
Query: 76 ELDPFQRVSVACLERN----ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKAL 131
EL P Q AC+ER +++LV+ T++GKT +AE A+ + + +Y PLKAL
Sbjct: 23 ELYPPQ---AACVERGLLDGKNLLVAIPTASGKTLIAEMAMHRHIANGGKCLYIVPLKAL 79
Query: 132 SNQKYRELHQEFKDVGLMTGDVTLSPNA----SCLVMTTEILRGMLYRGSEVLKEVAWVI 187
+++KY E + VGL TGD+ +A +V T+E + +L G+ + ++ V+
Sbjct: 80 ASEKYEEFGNKGVKVGLSTGDLDRRDDALGKNDIIVATSEKVDSLLRNGARWIPDITLVV 139
Query: 188 FDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244
DEIH + +RG E I + P ++++ LSAT+ N A W+ +V
Sbjct: 140 IDEIHLIDSPDRGPTLEMVIAKMRSKNPGMQLIGLSATIGNPKVLAGWL------DAELV 193
Query: 245 YTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGR 304
+ +RP L+ VF D + QF E + +KQ +
Sbjct: 194 TSSWRPVDLRQGVF----------YDNRIQFAE------RMRPVKQVSKNYDDLNLCLDT 237
Query: 305 MAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVE 364
+A+GG +VF SRR E A + + E +
Sbjct: 238 IAEGGQ---------------------CLVFVSSRRNAEAFAKRAAG---AIKSEDAALA 273
Query: 365 QVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFA 424
+ ++ E ++ + + +G A HH+GL + +VE F++ L+K + +
Sbjct: 274 ACAERLLEGTPTE-----MVKTLAACVAKGAAFHHAGLSRKERSIVEEAFRKNLLKCISS 328
Query: 425 TETFAMGLNMPAKTVVFTAVKKWD-GDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVD 483
T T A GLN+PA+ V+ ++ G+ + I EY QM+GRAGR D G +++
Sbjct: 329 TPTLAAGLNLPARRVIIRDYLRFSAGEGMQPIPVSEYRQMAGRAGRPRLDPYGEAVLIAK 388
Query: 484 E 484
E
Sbjct: 389 E 389
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 192/429 (44%), Gaps = 65/429 (15%)
Query: 75 FELDPFQRVSV-ACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSN 133
EL P Q +V L ++L + T++GKT +AE A+ + + +Y PL+AL++
Sbjct: 22 MELYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSILAGGKALYIVPLRALAS 81
Query: 134 QKYRELHQEFKD----VGLMTGDVTLSPNA----SCLVMTTEILRGMLYRGSEVLKEVAW 185
+K+R +EF + VG+ TGD L +V T+E +L + ++E++
Sbjct: 82 EKFRRF-REFSELGIRVGISTGDYDLRDEGLGVNDIIVATSEKTDSLLRNETVWMQEISV 140
Query: 186 VIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSATMSNATQFAEWICHLHKQPCH 242
V+ DE+H + +RG E ++ L P+ +++ LSAT+ NA + A W+
Sbjct: 141 VVADEVHLIDSPDRGPTLEVTLAKLRKMNPSCQILALSATVGNADELAVWL------EAE 194
Query: 243 VVYTDFRPTPLQHYVFPVGGSGLYLVVDEK--EQFREDNFVKLQDTFLKQKIGGRRENGK 300
+V +++RPT L VF G Y EK EQ +D V L LK+ +G+
Sbjct: 195 LVVSEWRPTELLEGVFFNG--TFYCKDREKTVEQSTKDEAVNLALDTLKK-------DGQ 245
Query: 301 ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360
+VF SR+ C A + T +
Sbjct: 246 C-------------------------------LVFESSRKNCMAFAKKAASTVKKTLSAE 274
Query: 361 DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVK 420
D D + E + L + ++ G A HH+GL ++ELVE F+ G +K
Sbjct: 275 D--RNALAGIADEILENSETDTSTNLAV-CIRSGTAFHHAGLTTPLRELVEDGFRAGRIK 331
Query: 421 ALFATETFAMGLNMPAKTVVFTAVKKWDG-DSHRYIGSGEYIQMSGRAGRRGKDDRGICI 479
+ +T T A GLN+PA+ V+ +++ D + I EY QM+GRAGR D G +
Sbjct: 332 LISSTPTLAAGLNLPARRVIIRNYRRYSSEDGMQPIPVLEYKQMAGRAGRPRLDPYGEAV 391
Query: 480 IMVDEQMEM 488
++ E
Sbjct: 392 LVAKSYKEF 400
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 118/450 (26%), Positives = 202/450 (44%), Gaps = 69/450 (15%)
Query: 76 ELDPFQRVSV-ACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134
EL P Q +V A + E+++ S T++GKT +AE A+ + + +Y PL+AL+++
Sbjct: 24 ELYPPQAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVARGGKALYIVPLRALASE 83
Query: 135 K---YRELHQEFKDVGLMTGDVTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVI 187
K + E Q D+G+ TG+ + +V T+E + ++ + ++++ V+
Sbjct: 84 KQADFEEFEQYGLDIGVSTGNYESEGGWLADKDIVVATSEKVDSLVRNDAPWIEDLTCVV 143
Query: 188 FDEIHYMKDRERGVVWEESII---FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244
DE+H + D ERG E ++ L P ++ V LSAT+ NA A W+ +V
Sbjct: 144 TDEVHLVDDGERGPTLEVTLAKLRRLNPDLQTVALSATIGNAEALATWL------DAGLV 197
Query: 245 YTDFRPTPLQ---HYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKA 301
+D+RP LQ HY G L+L +++ N K ++ + ++G
Sbjct: 198 DSDWRPIDLQKGVHY-----GQALHLEDGSQQRLSVQNNEKQTAAIVRDTL---EDDGS- 248
Query: 302 SGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL--DFNTQEE 359
+VF SRR E A ++ + EE
Sbjct: 249 ------------------------------TLVFVNSRRNAEAAAGRLANTVRPHLSTEE 278
Query: 360 KDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLV 419
+D + + + D + E + + + G A HH+GL +ELVE F++ LV
Sbjct: 279 RDQLADIAEEIRDVSDTE-----TSDDLADAVADGAAFHHAGLSRGHRELVEDAFRDRLV 333
Query: 420 KALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY--IGSGEYIQMSGRAGRRGKDDRGI 477
K + AT T A G+N P++ VV +++DG + + E QM GRAGR G D G
Sbjct: 334 KVVCATPTLAAGVNTPSRRVVVRDWRRYDGSAGGMAPLSVLEVHQMMGRAGRPGLDPYGE 393
Query: 478 CIIMVDEQMEMNTL-KDMVLGKPAPLVSTF 506
+++ E++ L + V P P+ S
Sbjct: 394 AVLIASSHDEVDELFERYVWADPEPVRSKL 423
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 128/513 (24%), Positives = 242/513 (47%), Gaps = 82/513 (15%)
Query: 76 ELDPFQR--VSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK------QRVIYTSP 127
EL P Q+ + L+++++ L+ T++GKT + E A+ D+ ++ ++ P
Sbjct: 15 ELRPPQKKVIEEGLLDKSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVP 74
Query: 128 LKALSNQKYRELHQEFK----DVGLMTGDVTLSPNAS---CLVMTTEILRGMLYRGSEVL 180
LKAL+++K+ E ++++ VG+ GD + S ++ T+E L ++ E +
Sbjct: 75 LKALASEKFDEFQKKYETYGIKVGMSIGDYDTKEDLSKYNIIITTSEKLDSLMRHNIEWI 134
Query: 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA-IKMVFLSATMSNATQFAEWICHLHKQ 239
K+++ + DEIH + D ERG E + L ++V LSAT+ N + A W+
Sbjct: 135 KDLSLAVIDEIHLIGDNERGGTLEVILTKLKNINAQIVGLSATVGNPEEIANWL------ 188
Query: 240 PCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENG 299
+V ++RP L+ G+YL E N++ QD+
Sbjct: 189 NAKLVTDEWRPVELK--------KGIYLE-------NEINYINNQDS------------Q 221
Query: 300 KASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRR----ECEQHAMS--MSKLD 353
K S + K S + +D+ IV + E+ ++F S+R E ++H ++ +SK +
Sbjct: 222 KKSFKAVKSISRNNLTDL--IVDSVNEK--GSCLIFCNSKRNAVGESKKHNLTKYLSKAE 277
Query: 354 FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELL 413
N + +++ + + ++ E ++L +K+G+A HH+GL ++ VE
Sbjct: 278 LN---DLNSISEEILSILETPTETCKSLSEC------IKKGVAFHHAGLTYQHRKAVEEG 328
Query: 414 FQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD 473
F+ ++K + T T + GLN+P + + ++++ + I E Q GRAGR G D
Sbjct: 329 FRNKVIKVICCTPTLSAGLNLPCRRAIIRDIRRYSQNGLIDIPKLEIHQCIGRAGRPGLD 388
Query: 474 DRGICIIMVDEQMEMNTLKDMVLGKPAPL------VSTFRLSYYSILNLMSRAEGQFTAE 527
G II+ + ++ + L PL +S ++ IL L++ E + T+E
Sbjct: 389 PYGEGIILAKNEKDV---EKAFLALTGPLENIYSKLSNQKVLRVHILGLIATLEIKSTSE 445
Query: 528 --HVIKNSFHQFQY---EKALPDIGKKVSKLEE 555
+ IKN+F+ QY L ++ K V LE+
Sbjct: 446 LINFIKNTFYAHQYGNLHGVLTNVSKVVEFLEK 478
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain
ATCC 700844 / DSMZ 13496 / JCM 10307 / IC-167)
GN=Cmaq_0318 PE=3 SV=1
Length = 756
Score = 116 bits (291), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 123/478 (25%), Positives = 218/478 (45%), Gaps = 77/478 (16%)
Query: 86 ACLERNESVLVSAHTSAGKTAVAEYA-IAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK 144
A L E++L+ + T++GKT +AE A + + ++ + PLKAL+ +K + + +
Sbjct: 35 AGLLNGENILMVSATASGKTLLAEVAAVNNVLVNDKKSLVAVPLKALAFEKLNDFNT-YS 93
Query: 145 DVGLMTGDVTLSPNA--------SCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196
++G+ T N+ ++ T E L +L + V +I DEIH++ D
Sbjct: 94 ELGIRVAASTGDYNSEDKWLGSYDVIITTYEKLDSLLRLKPSWIWNVGQLIIDEIHFIND 153
Query: 197 RERGVVWEESI-----IFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT 251
ERG + E + + L P I + LSAT+ N + A W+ +V +D+RP
Sbjct: 154 DERGPIIESIVAKLRMLNLNPQI--IGLSATIGNPEELANWLN------AKLVKSDWRPV 205
Query: 252 PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSG 311
L+ V+ G+ V++ E K SG
Sbjct: 206 SLREGVYH---KGVVTYVNDGE---------------------------------KRISG 229
Query: 312 SGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAV 371
G S I V + + V+VFS SR+ + A +++ ++ V +
Sbjct: 230 QGDSLINLTVDTLNDGG--QVLVFSSSRQGAVRIARKLAEYICSS-----PVRYIDPGEA 282
Query: 372 DCLNEEDRNLPA----IELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATET 427
L EE R + E + L+K G++ HH+GL ++ ++E F+ G+++ L +T T
Sbjct: 283 GKLAEEVRETSSSRILAEELTGLIKCGVSFHHAGLELEVRRVIEEGFRRGVLRVLASTTT 342
Query: 428 FAMGLNMPAKTVVFTAVKKWD-GDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQM 486
A G+N+PA+ V+ ++++ G I EY QM+GRAGR G D G II+V +
Sbjct: 343 LAAGVNLPARRVIVNEYRRYEPGYGFIEIPVMEYKQMAGRAGRPGLDPYGEAIIIVSSKD 402
Query: 487 EMNTLKDMVLGKPAPLVSTFRLSYYSI-LNLMSRAEGQF--TAEHVIK---NSFHQFQ 538
E++ + D + P V + ++ S+ + +S Q+ T + ++K N+F FQ
Sbjct: 403 EVDYVIDKYIKSPPEYVKSNFMNPTSLKFHTLSAVASQYAETIDELVKFTSNTFAGFQ 460
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 123/479 (25%), Positives = 202/479 (42%), Gaps = 95/479 (19%)
Query: 93 SVLVSAHTSAGKTAVAEYAIAMA---------FRDKQRVIYTSPLKALSNQKYRELHQEF 143
+++ S T++GKT +A+ A+ A F +Y PL+AL+ +K +E + F
Sbjct: 42 NLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPLRALAGEKAQEF-EAF 100
Query: 144 KDVGLMTGDVT---------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYM 194
+ GL G T L+ N +V T+E + ++ G+ + +++ V+ DE+H +
Sbjct: 101 ERFGLSVGVSTGNYERDGARLADN-DIVVATSEKVDSLVRNGAGWIDDLSCVVADEVHLV 159
Query: 195 KDRERGVVWEESIIFLPPAI---KMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT 251
D RG E ++ L + ++V LSAT+ NA + A W+ +V +D+RP
Sbjct: 160 DDDHRGPTLEVTLAKLRQQVADLQVVALSATVGNAGELAAWL------DAELVDSDWRPI 213
Query: 252 PLQ---HYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKG 308
L+ HY G L D+ G A+
Sbjct: 214 ELRTGVHY-------GQSLHYDD-------------------------------GTQAEL 235
Query: 309 GSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368
GSG + + + +VF SRR E A ++ + N + E++
Sbjct: 236 SVGSGSQTAAVVADTLADDG--STLVFVNSRRNAEASARRLADVTGNALSSAER-ERLAD 292
Query: 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428
A + D + + + G A HH+GL +ELVE F++ LVKA+ AT T
Sbjct: 293 IAAEIRGVSDTETS--DELADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTL 350
Query: 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSG---------EYIQMSGRAGRRGKDDRGICI 479
A G+N PA+ VV V+ W RY G+ E QM GRAGR G D G +
Sbjct: 351 AAGVNTPARRVV---VRDW----QRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAV 403
Query: 480 IMVDEQMEMNTLKD-MVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQF 537
++ + E+ L D V P P+ S ++++ FT ++ H+F
Sbjct: 404 LLANSHDELEELFDRYVYADPEPVRSKLAAEPALRTHVLAAIATGFT---TTEDGLHEF 459
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 123/479 (25%), Positives = 202/479 (42%), Gaps = 95/479 (19%)
Query: 93 SVLVSAHTSAGKTAVAEYAIAMA---------FRDKQRVIYTSPLKALSNQKYRELHQEF 143
+++ S T++GKT +A+ A+ A F +Y PL+AL+ +K +E + F
Sbjct: 42 NLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPLRALAGEKAQEF-EAF 100
Query: 144 KDVGLMTGDVT---------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYM 194
+ GL G T L+ N +V T+E + ++ G+ + +++ V+ DE+H +
Sbjct: 101 ERFGLSVGVSTGNYERDGARLADN-DIVVATSEKVDSLVRNGAGWIDDLSCVVADEVHLV 159
Query: 195 KDRERGVVWEESIIFLPPAI---KMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT 251
D RG E ++ L + ++V LSAT+ NA + A W+ +V +D+RP
Sbjct: 160 DDDHRGPTLEVTLAKLRQQVADLQVVALSATVGNAGELAAWL------DAELVDSDWRPI 213
Query: 252 PLQ---HYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKG 308
L+ HY G L D+ G A+
Sbjct: 214 ELRTGVHY-------GQSLHYDD-------------------------------GTQAEL 235
Query: 309 GSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368
GSG + + + +VF SRR E A ++ + N + E++
Sbjct: 236 SVGSGSQTAAVVADTLADDG--STLVFVNSRRNAEASARRLADVTGNALSSAER-ERLAD 292
Query: 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428
A + D + + + G A HH+GL +ELVE F++ LVKA+ AT T
Sbjct: 293 IAAEIRGVSDTETS--DELADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTL 350
Query: 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSG---------EYIQMSGRAGRRGKDDRGICI 479
A G+N PA+ VV V+ W RY G+ E QM GRAGR G D G +
Sbjct: 351 AAGVNTPARRVV---VRDW----QRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAV 403
Query: 480 IMVDEQMEMNTLKD-MVLGKPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQF 537
++ + E+ L D V P P+ S ++++ FT ++ H+F
Sbjct: 404 LLANSHDELEELFDRYVYADPEPVRSKLAAEPALRTHVLAAIATGFT---TTEDGLHEF 459
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon
RC-I GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 109 bits (273), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 108/417 (25%), Positives = 189/417 (45%), Gaps = 63/417 (15%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK------ 144
+++L + T++GKT +AE A+ + + + IY PLKAL+++KY + K
Sbjct: 39 GKNLLAAIPTASGKTLLAEMAMLKSIAEGGKAIYIVPLKALASEKYDRFLEFSKLPIKPD 98
Query: 145 --DVGLMTGDVTLSP----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE 198
VG+ TGD +V T+E +L G+ L ++ V+ DE+H +
Sbjct: 99 GVKVGIATGDFDSRDEYLGEKDIIVATSEKTDSLLRNGASWLSGLSVVVADEVHLIDSPN 158
Query: 199 RGVVWEESIIFLPPA---IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQH 255
RG E ++ L ++++ LSAT+ NA A+W+ +V +++RPT L+
Sbjct: 159 RGPTLEVTLAKLRKINVNLQILALSATIGNAKALAKWM------DAALVQSEWRPTTLKE 212
Query: 256 YVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGS 315
VF G + TF K+K R N +G
Sbjct: 213 GVFY--GRAI--------------------TFKKEK---RTVN------------NAGPD 235
Query: 316 DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLN 375
++ +V +E Q +VF+ +R+ E A +++ + + + EQ+ + D L
Sbjct: 236 EVNSLVADTLEEGGQ-CLVFANTRKSSESIAQKVAR-SLSKKLQPAEKEQLAKLKQDVLR 293
Query: 376 EEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP 435
+ + E + + G+A HH+GL + +VE F++ ++K + T T A GLN+P
Sbjct: 294 HAETD--TCEKLAECVGNGVAFHHAGLKGEHRRIVEDGFRQNILKVIACTPTLAAGLNLP 351
Query: 436 AKTVVFTAVKKWDGDSHRY-IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTL 491
A+ V+ K++D + I EY QM+GRAGR D G +++ E L
Sbjct: 352 ARRVIIRDYKRFDVNYGSVPIPVLEYKQMAGRAGRPRLDPYGEAVLIAKNYDEFGEL 408
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 124/561 (22%), Positives = 235/561 (41%), Gaps = 110/561 (19%)
Query: 22 TPEEESTKKQ----RNLTRSCVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFEL 77
TP+EE+ K + R + C+ +P + G F +N ++ +
Sbjct: 100 TPDEEAKKPKKVTIRKSAKKCLSTTILPDSF--------RGVFKFTEFNKMQSEAFP--- 148
Query: 78 DPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLKAL 131
+ E NE+ ++S+ T +GKT + E AI + + ++IY +P K+L
Sbjct: 149 --------SIYESNENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSL 200
Query: 132 SNQKYRELHQEFKD--VGLMTGDVTL-----SPNASCLVMTTEILRGMLYRGSE---VLK 181
+ Y+ F + VG++T D + + + ++ T E + R S+ + +
Sbjct: 201 CYEMYKNWFPSFVNLSVGMLTSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSRLFE 260
Query: 182 EVAWVIFDEIHYMKDRERGVVWE---ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHK 238
V V+ DEIH +K++ RG E + + I+ V LSAT+ N A W+ ++
Sbjct: 261 LVKLVLVDEIHTIKEK-RGASLEVILTRMNTMCQNIRFVALSATVPNIEDLALWLKTNNE 319
Query: 239 QPCHVVYTD--FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRR 296
P +++ D +R L +V+ + K F++D
Sbjct: 320 LPANILSFDESYRQVQLTKFVYGYS-------FNCKNDFQKDAIY--------------- 357
Query: 297 ENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNT 356
S + +I++ + + PV++F C A ++S F
Sbjct: 358 -----------------NSKLIEIIEKHADNR--PVLIF------CPTRASTISTAKFLL 392
Query: 357 QEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQE 416
+F + N P+ +++ +++GIA HH+G+ + VE F
Sbjct: 393 NN------HIFSKSKKRCNHN----PSDKILNECMQQGIAFHHAGISLEDRTAVEKEFLA 442
Query: 417 GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRG 476
G + L +T T A+G+N+PA V+ K W+ + + +QM GRAGR + G
Sbjct: 443 GSINILCSTSTLAVGVNLPAYLVIIKGTKSWNSSEIQEYSDLDVLQMIGRAGRPQFETHG 502
Query: 477 ICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQF---TAEHVIKNS 533
+IM D +M+ T ++++ G L S+ L+ L + E + TA + ++N+
Sbjct: 503 CAVIMTDSKMKQ-TYENLIHGTDV-LESSLHLNLIEHLAAETSLETVYSIETAVNWLRNT 560
Query: 534 FHQFQYEK---ALPDIGKKVS 551
F ++ K A ++ + VS
Sbjct: 561 FFYVRFGKNPAAYQEVNRYVS 581
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 113/416 (27%), Positives = 181/416 (43%), Gaps = 68/416 (16%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK--YRELHQEFKDVGL 148
SVL+ T++GK+ +AE A A + + +Y PLKAL+ +K + ++ VG+
Sbjct: 39 GRSVLLCTATASGKSLLAEVAAVKAGLEGRMALYAVPLKALAYEKLVHFSYYRGLVKVGV 98
Query: 149 MTGDVTLSPNA----SCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204
TGD +V+T E L +L L V V+ DEIHY+ D RG V E
Sbjct: 99 STGDFDSDDRRLHEFDVVVVTYEKLDSLLRHRPNWLGLVGVVVVDEIHYLGDPRRGPVLE 158
Query: 205 ESII---FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVG 261
+ L + + LSAT+ NA + A W+ +V + +RP PL+ V+ G
Sbjct: 159 SIVAKLRHLGLKTQFIGLSATVGNAGEVAAWLG------ARLVESSWRPVPLREGVYHGG 212
Query: 262 GSGLYLVVDEKEQFREDNFVKLQDTFLKQ-KIGGRRENGKASGRMAKGGSGSGGSDIFKI 320
++ D +++ G E A +A GG
Sbjct: 213 ------------------VIRFSDGSMQRVNAPGDAEVALAVDAVAGGGQ---------- 244
Query: 321 VKMIMERKFQPVIVFSFSR----RECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376
+VF+ SR R + A +M + K E+V + + +
Sbjct: 245 -----------ALVFTNSRSSTVRLAKAVAKAMEAAGLVPRGAKALAEEVLKASSSKIIG 293
Query: 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA 436
+ + L+ RG+A H++GL ++ LVE F+ GL+K + +T T A G+N+PA
Sbjct: 294 RE--------LADLVARGVAFHNAGLELEVRRLVEDGFRRGLLKVVVSTTTLAAGVNLPA 345
Query: 437 KTVVFTAVKKWDGDSHR-YIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTL 491
+ VV +++D R I EY QM+GRAGR G D G +++ + E L
Sbjct: 346 RRVVVADYERFDPALGREEIPVLEYRQMAGRAGRPGLDPYGEAVLVARSKGEAEYL 401
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 113/439 (25%), Positives = 187/439 (42%), Gaps = 80/439 (18%)
Query: 73 YSF-ELDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL 128
Y+F +P Q L + +VL+ A T +GKT AE AI F + +Y +PL
Sbjct: 1322 YNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPL 1381
Query: 129 KAL-----SNQKYRELHQEFKDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGS 177
KAL + K R + K V +TGDVT A +V T E G+ ++
Sbjct: 1382 KALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNR 1441
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWEESII---FLPP----AIKMVFLSATMSNATQFA 230
+K+V +I DEIH + + ERG V E + F+ +++V LS ++NA A
Sbjct: 1442 NYVKQVTILIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLA 1500
Query: 231 EWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQ 290
+W+ ++ + RP PL+ ++ + F ++ + K
Sbjct: 1501 DWL-NIRQMGLFNFRPSVRPVPLEVHI---------------QGFPGQHYCPRMASMNKP 1544
Query: 291 KIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMS 350
R + A +PV++F SRR+ A+ +
Sbjct: 1545 TFQAIRSHSPA----------------------------KPVLIFVSSRRQTRLTALELI 1576
Query: 351 KLDFNTQEEKDTV---EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407
++ K + E+ +N + + + + L L GI +HH+GL +
Sbjct: 1577 AFLATEEDPKQWLNMDEREMENIIGTIRDSNLKLT--------LAFGIGMHHAGLHERDR 1628
Query: 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGS--GEYIQMSG 465
+ VE LF ++ L AT T A G+N PA V+ + +DG + RY+ + +QM G
Sbjct: 1629 KTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMG 1688
Query: 466 RAGRRGKDDRGICIIMVDE 484
RAGR DD+G +I+V +
Sbjct: 1689 RAGRPQFDDQGKAVILVHD 1707
Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 117/467 (25%), Positives = 194/467 (41%), Gaps = 101/467 (21%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFR----------DKQRVIYTSPLKALSNQKYRELH 140
NE++L+ A T AGKT +A + R ++ +++Y +P+KAL+ +
Sbjct: 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFS 551
Query: 141 QEFKDVGL----MTGDVTLSPNA---SCLVMTTEILRGMLYR---GSEVLKE-VAWVIFD 189
+ + +G+ +TGD+ LS N + +++TT ++ R G L + V +I D
Sbjct: 552 KRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILD 611
Query: 190 EIHYMKDRERGVVWEESIIF--------LPPAIKMVFLSATMSNATQFAEWICHLHKQPC 241
E+H + + +RG V E SI+ I+++ LSAT+ N A + LH PC
Sbjct: 612 EVHLLHE-DRGPVLE-SIVARTLRQVESTQSMIRILGLSATLPNYLDVATF---LHVNPC 666
Query: 242 -HVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGK 300
+ + D R P+ P+G + L + K Q + ++ LKQ G +
Sbjct: 667 IGLFFFDGRFRPV-----PLGQTFLGIKSANKVQQLNNMDEVCYESVLKQVKAGHQ---- 717
Query: 301 ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQE-- 358
V+VF +R + AMS+ + N +
Sbjct: 718 -------------------------------VMVFVHARNATVRTAMSLIERAKNNGQIC 746
Query: 359 --------EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELV 410
E E+ Q + RN EL G ++HH+G+L + LV
Sbjct: 747 YFLPTQGPEYGHAEKQVQKS--------RNRQVREL----FPDGFSIHHAGMLRQDRNLV 794
Query: 411 ELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSG--EYIQMSGRAG 468
E LF G +K L T T A G+N+PA V+ + + ++ G + +Q+ GRAG
Sbjct: 795 ESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAG 854
Query: 469 RRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILN 515
R D G II+ + L +L + P+ S F S LN
Sbjct: 855 RPQFDKFGEGIIITTHDKLSHYLS--LLTQQNPIESQFLESLADNLN 899
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 120/460 (26%), Positives = 200/460 (43%), Gaps = 94/460 (20%)
Query: 60 FANPVYNGEMAKTYSFELDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-- 116
+A P ++G + L+ Q R+ + L E +L+ A T AGKT VA +
Sbjct: 464 WAQPAFDGYKS------LNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGN 517
Query: 117 ---------RDKQRVIYTSPLKALSNQKYRELHQEFK----DVGLMTGDVTLSPN----A 159
D+ +++Y +P+K+L + + VG MTGD +S
Sbjct: 518 HLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKEQFMAT 577
Query: 160 SCLVMTTEILRGMLYRGSEVL--KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI--- 214
+V T E + +G E + V +I DEIH + D +RG V E ++ +
Sbjct: 578 QVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHD-DRGPVLESIVVRTIRQMEQN 636
Query: 215 ----KMVFLSATMSNATQFAEWICHLHKQPCHVVYTD--FRPTPLQHYVFPVGGSGLYLV 268
++V LSAT+ N A + L +P H+ + D +RP PL+ Y+
Sbjct: 637 HDECRLVGLSATLPNYQDVATF---LRVKPEHLHFFDNSYRPVPLEQQ---------YIG 684
Query: 269 VDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERK 328
V EK+ + + + + KI M G
Sbjct: 685 VTEKKALKR---FQAMNEVVYDKI------------MEHAGKSQ---------------- 713
Query: 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN---AVDCLNEEDRNLPAIE 385
V+VF SR+E + A ++ + EKDT+ + + + L E ++
Sbjct: 714 ---VLVFVHSRKETAKTAKAIR----DACLEKDTLSAFMREGSASTEILRTEAEQAKNLD 766
Query: 386 LMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK 445
L LL G A+HH+G+ V + LVE LF + ++ LF+T T A G+N+PA TV+ +
Sbjct: 767 LK-DLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQ 825
Query: 446 KWDGDSHRY--IGSGEYIQMSGRAGRRGKDDRGICIIMVD 483
++ + R+ +G+ + +QM GRAGR DDRG I++ +
Sbjct: 826 IYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITN 865
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 85/178 (47%), Gaps = 22/178 (12%)
Query: 77 LDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSN 133
+P Q +V E NE+V+V A +GKTA+AE A+ F + + + +Y +P++ ++
Sbjct: 1322 FNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDMAT 1381
Query: 134 QKYRELHQEFK-----DVGLMTG----DVTLSPNASCLVMTTEILRGMLYRGSE--VLKE 182
+ Y + + + + L+TG D+ L+ ++ T E + R + ++
Sbjct: 1382 KVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQN 1441
Query: 183 VAWVIFDEIHYMKDRERGVVWEESIIF-------LPPAIKMVFLSATMSNATQFAEWI 233
V I D++H M G V+E L A+++V LS++++NA W+
Sbjct: 1442 VKLFIADDLH-MIGASNGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMWL 1498
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1
PE=2 SV=2
Length = 1435
Score = 106 bits (264), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 112/450 (24%), Positives = 189/450 (42%), Gaps = 96/450 (21%)
Query: 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRD------KQRVIYTSPLKALSNQKYRELHQ 141
L + + ++ A T +GKT V E AI + +++Y +P+KAL +Q++ + +
Sbjct: 293 LYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKE 352
Query: 142 EFKDVGL----MTGDVTLSP-----NASCLVMTTEILRGML--YRGSEVLKEVAWVIFDE 190
+F +GL +TGD + +A ++ T E M +R + +++ V + DE
Sbjct: 353 KFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDE 412
Query: 191 IHYMKDRERGVVWE-------------ESIIFLPPAIKMVFL--SATMSNATQFAEWICH 235
+H +KD RG E +++ AI M F+ SAT+ NA AEW+
Sbjct: 413 VHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSD 472
Query: 236 LHKQP-CHVVYTDFRPTPLQHYV--FPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKI 292
+ C + RP LQ V FP + + +F+ D L KI
Sbjct: 473 GERPAVCLKMDESHRPVKLQKVVLGFPCSSN--------QTEFK-------FDLTLNYKI 517
Query: 293 GGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL 352
+++M ++K P +VF +R+ +Q A + K
Sbjct: 518 AS-------------------------VIQMYSDQK--PTLVFCATRKGVQQAASVLVKD 550
Query: 353 D--FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELV 410
T E+K +++ + D + +LK G A HH+G+ +++V
Sbjct: 551 AKFIMTVEQKQRLQKYAYSVRD------------SKLRDILKDGAAYHHAGMELSDRKVV 598
Query: 411 ELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRR 470
E F G + LF T T AMG+N+PA VV + + G + +QM GRAGR
Sbjct: 599 EGAFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGLFEEYSETDILQMIGRAGRP 658
Query: 471 GKDDRGICIIMV-----DEQMEMNTLKDMV 495
D +IM D+ ++M +D V
Sbjct: 659 QFDTTATAVIMTRLSTRDKYIQMLACRDTV 688
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 110/443 (24%), Positives = 188/443 (42%), Gaps = 75/443 (16%)
Query: 66 NGEMAKTYSF-ELDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK--QR 121
N + + F +P Q +V N +VL+ + T +GKT AE A+ FRD+ +
Sbjct: 1315 NKDFESLFKFSHFNPIQTQVFHTLYYTNNNVLLGSPTGSGKTICAELAMFKVFRDEPHMK 1374
Query: 122 VIYTSPLKALSNQKYRELHQEF-----KDVGLMTGDVTLS----PNASCLVMTTEILRGM 172
V+Y +PLKAL ++ + +F K + +TGD T + NA + T E G+
Sbjct: 1375 VVYIAPLKALVRERMNDWKVKFQEKLGKKLVELTGDYTPNMIALQNADIVTTTPEKWDGI 1434
Query: 173 L--YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP-------PAIKMVFLSATM 223
++ + V+ +I DEIH + + RG + E + + I++V LS M
Sbjct: 1435 SRNWKNRSYVTSVSLLIIDEIHLIGEL-RGPILEVIVSRMKLISKQTGVNIRVVGLSTAM 1493
Query: 224 SNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKL 283
+NA +EW+ + + RP P++ ++ + F+ N+
Sbjct: 1494 ANAIDLSEWMG-IDRVGLFNFRPSCRPVPIEVHI---------------QGFQGKNYCPR 1537
Query: 284 QDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECE 343
T K F + +K PV++F SRR+
Sbjct: 1538 MQTMNKPS--------------------------FAAIATYSPKK--PVLIFVSSRRQTR 1569
Query: 344 QHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLL 403
A+ + + +++ F +D++L L GI +HH+GL
Sbjct: 1570 LTALDLISYLVVDNDPLQWIQKGFDIEPTLARVKDQHLRHT------LSFGIGMHHAGLN 1623
Query: 404 PVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGS--GEYI 461
+ +VE LF E ++ L +T T A G+N+PA V+ + +DG + RY+ + +
Sbjct: 1624 DGDRTIVESLFGENKIQILISTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVL 1683
Query: 462 QMSGRAGRRGKDDRGICIIMVDE 484
QM GRAGR D G ++MV E
Sbjct: 1684 QMIGRAGRPQFDKEGKAMVMVHE 1706
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 110/435 (25%), Positives = 185/435 (42%), Gaps = 99/435 (22%)
Query: 82 RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-----------RDKQRVIYTSPLKA 130
RV + + NE++L+SA T AGKT +A I +D ++IY +PLKA
Sbjct: 489 RVFESAYKSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLKA 548
Query: 131 LSNQKYRELHQEFKDVGL----MTGDVTLS----PNASCLVMTTEILRGMLYRGSEV--L 180
L+++ + K +G+ +TGD+ L+ +V T E + + S+V
Sbjct: 549 LASEMVEKFSNSLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVALT 608
Query: 181 KEVAWVIFDEIHYMKDRERGVVWE-------ESIIFLPPAIKMVFLSATMSNATQFAEWI 233
K V +I DEIH + + ERG V E + I++V LSAT+ N A +I
Sbjct: 609 KLVRLIIIDEIHLLHE-ERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFI 667
Query: 234 CHLHKQPC---HVVYTDFRPTPL-QHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLK 289
+ P H + +RP PL Q+++ G+ ++ + Q +
Sbjct: 668 ----RAPASGTHFFDSSYRPVPLTQNFIGVKDNQGIMVMKNNMNQLCYE----------- 712
Query: 290 QKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSM 349
R E G V++F SR++ + A +
Sbjct: 713 -----RLEKSLKEGHQ--------------------------VMIFVHSRKDTVKSAEIL 741
Query: 350 SKL------DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLL 403
S + F+ +E ++ F+ ++E R+L + GI+VHH+GLL
Sbjct: 742 SDMAKEKHFRFSNEEPSFGAKKEFEKVK---SKEIRSL---------FQHGISVHHAGLL 789
Query: 404 PVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY--IGSGEYI 461
+ +VE F G +K L T T A G+N+PA TV+ + ++ + + +G + +
Sbjct: 790 RSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVM 849
Query: 462 QMSGRAGRRGKDDRG 476
Q+ GRAGR D G
Sbjct: 850 QIFGRAGRPQFDTSG 864
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 114/439 (25%), Positives = 186/439 (42%), Gaps = 80/439 (18%)
Query: 73 YSF-ELDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL 128
Y+F +P Q L + +VL+ A T +GKT AE AI F + +Y +PL
Sbjct: 1323 YNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPL 1382
Query: 129 KAL-----SNQKYRELHQEFKDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGS 177
KAL + K R + K V +TGDVT A +V T E G+ ++
Sbjct: 1383 KALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNR 1442
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWEESII---FLPP----AIKMVFLSATMSNATQFA 230
+++V +I DEIH + + ERG V E + F+ +++V LS ++NA A
Sbjct: 1443 SYVQQVNILIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLA 1501
Query: 231 EWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQ 290
+W+ ++ + RP PL+ ++ + F ++ + K
Sbjct: 1502 DWL-NIKQMGLFNFRPSVRPVPLEVHI---------------QGFPGQHYCPRMASMNKP 1545
Query: 291 KIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMS 350
R + A +PV++F SRR+ A+ +
Sbjct: 1546 AFQAIRSHSPA----------------------------KPVLIFVSSRRQTRLTALELI 1577
Query: 351 KLDFNTQEEKDTV---EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407
++ K + EQ N + + + + L L GI +HH+GL +
Sbjct: 1578 AFLATEEDPKQWLNMDEQEMDNIIGTVRDSNLKLT--------LAFGIGMHHAGLHERDR 1629
Query: 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGS--GEYIQMSG 465
+ VE LF V+ L AT T A G+N PA V+ + +DG + RY+ + +QM G
Sbjct: 1630 KTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMG 1689
Query: 466 RAGRRGKDDRGICIIMVDE 484
RAGR DD+G +I+V +
Sbjct: 1690 RAGRPQFDDQGKAVILVHD 1708
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 116/464 (25%), Positives = 189/464 (40%), Gaps = 95/464 (20%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFR----------DKQRVIYTSPLKALSNQKYRELH 140
NE++L+ A T AGKT +A I R ++ +++Y +P+KAL+ +
Sbjct: 493 NENMLICAPTGAGKTNIAMLTILHEIRQHFHQGVIKKNEFKIVYVAPMKALAAEMTNYFS 552
Query: 141 QEFKDVGL----MTGDVTLSPN----ASCLVMTTEILRGMLYR--GSEVLKE-VAWVIFD 189
+ + +G+ +TGD+ LS + LV T E + + G L + V +I D
Sbjct: 553 KRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILD 612
Query: 190 EIHYMKDRERGVVWEESIIF--------LPPAIKMVFLSATMSNATQFAEWICHLHKQP- 240
E+H + + +RG V E SI+ I+++ LSAT+ N A + LH P
Sbjct: 613 EVHLLHE-DRGPVLE-SIVARTLRQVESTQSMIRILGLSATLPNYLDVATF---LHVNPY 667
Query: 241 CHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGK 300
+ Y D R P+ P+G + L + K Q + ++ LKQ G +
Sbjct: 668 IGLFYFDGRFRPV-----PLGQTFLGIKSTNKMQQLNNMDEVCYESVLKQVKAGHQ---- 718
Query: 301 ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQE-- 358
V+VF +R + AMS+ + N+ +
Sbjct: 719 -------------------------------VMVFVHARNATVRTAMSLIERAKNSGQIS 747
Query: 359 -----EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELL 413
E + N++ R L G ++HH+G+L + LVE L
Sbjct: 748 CFLPTEGPEYGHALKQVQKSRNKQVREL---------FSDGFSIHHAGMLRQDRNLVENL 798
Query: 414 FQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSG--EYIQMSGRAGRRG 471
F G +K L T T A G+N+PA VV + + ++ G + +Q+ GRAGR
Sbjct: 799 FSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQ 858
Query: 472 KDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILN 515
D G II+ + L +L + P+ S F S LN
Sbjct: 859 FDKFGEGIIITTHDKLSHYLS--LLTQQNPIESQFLESLADNLN 900
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 113/439 (25%), Positives = 187/439 (42%), Gaps = 80/439 (18%)
Query: 73 YSF-ELDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL 128
Y+F +P Q L + +VL+ A T +GKT AE AI F + +Y +PL
Sbjct: 1322 YNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPL 1381
Query: 129 KAL-----SNQKYRELHQEFKDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGS 177
KAL + K R + K V +TGDVT A +V T E G+ ++
Sbjct: 1382 KALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNR 1441
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWEESII---FLPP----AIKMVFLSATMSNATQFA 230
+++V +I DEIH + + ERG V E + F+ +++V LS ++NA A
Sbjct: 1442 NYVQQVTILIIDEIHLLGE-ERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLA 1500
Query: 231 EWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQ 290
+W+ ++ + RP PL+ ++ + F ++ + K
Sbjct: 1501 DWL-NIKQMGLFNFRPSVRPVPLEVHI---------------QGFPGQHYCPRMASMNKP 1544
Query: 291 KIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMS 350
R + A +PV++F SRR+ A+ +
Sbjct: 1545 AFQAIRSHSPA----------------------------KPVLIFVSSRRQTRLTALELI 1576
Query: 351 KLDFNTQEEKDTV---EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407
++ K + E+ +N + + + + L L GI +HH+GL +
Sbjct: 1577 AFLATEEDPKQWLNMDEREMENIIATVRDSNLKLT--------LAFGIGMHHAGLHERDR 1628
Query: 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGS--GEYIQMSG 465
+ VE LF V+ L AT T A G+N PA V+ + +DG + RY+ + +QM G
Sbjct: 1629 KTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMG 1688
Query: 466 RAGRRGKDDRGICIIMVDE 484
RAGR DD+G +I+V +
Sbjct: 1689 RAGRPQFDDQGKAVILVHD 1707
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 112/461 (24%), Positives = 191/461 (41%), Gaps = 89/461 (19%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFR----------DKQRVIYTSPLKALSNQKYRELH 140
NE++L+ A T AGKT +A + R ++ +++Y +P+KAL+ +
Sbjct: 492 NENMLICAPTGAGKTNIAMLTVLHEIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTDYFS 551
Query: 141 QEFKDVGL----MTGDVTLSPNA---SCLVMTTEILRGMLYR---GSEVLKEVA-WVIFD 189
+ + +G+ +TGD+ LS + + +++TT ++ R G L ++ +I D
Sbjct: 552 RRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLILD 611
Query: 190 EIHYMKDRERGVVWEESIIF--------LPPAIKMVFLSATMSNATQFAEWICHLHKQP- 240
E+H + + +RG V E SI+ I+++ LSAT+ N A + LH P
Sbjct: 612 EVHLLHE-DRGPVLE-SIVARTLRQVESTQSMIRILGLSATLPNYLDVATF---LHVNPY 666
Query: 241 CHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGK 300
+ + D R P+ P+G + L + K Q + + LKQ G +
Sbjct: 667 IGLFFFDGRFRPV-----PLGQTFLGIKCANKMQQLNNMDEVCYENVLKQVKAGHQ---- 717
Query: 301 ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360
V+VF +R + AMS+ + K
Sbjct: 718 -------------------------------VMVFVHARNATVRTAMSL------IERAK 740
Query: 361 DTVEQVF----QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQE 416
+ F Q L E+ + + L G ++HH+G+L + LVE LF
Sbjct: 741 NCGHIPFFFPTQGHDYVLAEKQVQRSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSN 800
Query: 417 GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSG--EYIQMSGRAGRRGKDD 474
G +K L T T A G+N+PA V+ + + ++ G + +Q+ GRAGR D
Sbjct: 801 GHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDK 860
Query: 475 RGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILN 515
G II+ + L +L + P+ S F S LN
Sbjct: 861 FGEGIIITTHDKLSHYL--TLLTQRNPIESQFLESLADNLN 899
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 114/464 (24%), Positives = 195/464 (42%), Gaps = 106/464 (22%)
Query: 66 NGEMAKTYSFE-LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQR 121
N + Y F+ +P Q ++ L NE+ V + T +GKT VAE AI AF+ ++
Sbjct: 1128 NPLIESIYPFKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWHAFKTFPGKK 1187
Query: 122 VIYTSPLKALSNQKYRELHQEFKDVG-----LMTGDVTLSP----NASCLVMTTEILRGM 172
++Y +P+KAL ++ + ++ V +TGD P +A+ ++ T E G+
Sbjct: 1188 IVYIAPMKALVRERVDDWRKKITPVTGDKVVELTGDSLPDPKDVHDATIVITTPEKFDGI 1247
Query: 173 L--YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-------PPAIKMVFLSATM 223
++ + +++V+ +I DEIH + +RG + E + + ++++ +S +
Sbjct: 1248 SRNWQTRKFVQDVSLIIMDEIHLLAS-DRGPILEMIVSRMNYISSQTKQPVRLLGMSTAV 1306
Query: 224 SNATQFAEWIC----HLHKQPCHVVYTDFRPTPLQHYV--FPVGGSGLYLVVDEKEQFRE 277
SNA A W+ L+ P V RP PL+ Y+ FP
Sbjct: 1307 SNAYDMAGWLGVKDHGLYNFPSSV-----RPVPLKMYIDGFP------------------ 1343
Query: 278 DN--FVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVF 335
DN F L T K +F +K K P ++F
Sbjct: 1344 DNLAFCPLMKTMNKP--------------------------VFMAIKQHSPDK--PALIF 1375
Query: 336 SFSRRECEQHAMSMSKLD---------FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIEL 386
SRR+ A+ + L N +E++ + Q D L
Sbjct: 1376 VASRRQTRLTALDLIHLCGMEDNPRRFLNIDDEEELQYYLSQVTDDTLKLS--------- 1426
Query: 387 MLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446
L+ GI +HH+GL+ + + LFQ+ ++ L AT T A G+N+PA V+ +
Sbjct: 1427 ----LQFGIGLHHAGLVQKDRSISHQLFQKNKIQILIATSTLAWGVNLPAHLVIIKGTQF 1482
Query: 447 WDG--DSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEM 488
+D + +R + + +QM GRAGR D G I+ E +M
Sbjct: 1483 FDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTKESKKM 1526
Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 101/407 (24%), Positives = 181/407 (44%), Gaps = 90/407 (22%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFR---------------DKQRVIYTSPLKALSNQK 135
NE++L+ A T AGKT +A I + D +VIY +PLKAL+ +
Sbjct: 303 NENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKALAAEI 362
Query: 136 YRELHQEFKDVGL----MTGDVTLSPN---ASCLVMTTEILRGMLYR----GSEVLKEVA 184
+ ++ + +TGD+ L+ A+ +++TT ++ R ++++ +V
Sbjct: 363 VDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDLVSKVK 422
Query: 185 WVIFDEIHYMKDRERGVVWEESIIFL-------PPAIKMVFLSATMSNATQFAEWICHLH 237
+I DE+H + + +RG V E + I+++ LSAT+ N A+++ ++
Sbjct: 423 LLIIDEVHLLHE-DRGSVIETLVARTLRQVESSQSMIRIIGLSATLPNFMDVADFLG-VN 480
Query: 238 KQPCHVVYTD--FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGR 295
+Q + Y D FRP PL+ +Q +G R
Sbjct: 481 RQ-IGMFYFDQSFRPKPLE----------------------------------QQLLGCR 505
Query: 296 RENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFN 355
GKA R +K D K+ +MI +R +Q V+VF SR+E + A + KL +
Sbjct: 506 ---GKAGSRQSKENIDKVAYD--KLSEMI-QRGYQ-VMVFVHSRKETVKSARNFIKLAES 558
Query: 356 TQE----EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVE 411
E D +E+ + + + D+++ I + G +HH+G+ + L E
Sbjct: 559 NHEVDLFAPDPIEKD-KYSRSLVKNRDKDMKEI------FQFGFGIHHAGMARSDRNLTE 611
Query: 412 LLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSG 458
+F++G +K L T T A G+N+PA V+ + +D +I G
Sbjct: 612 KMFKDGAIKVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLG 658
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 114/437 (26%), Positives = 187/437 (42%), Gaps = 76/437 (17%)
Query: 73 YSF-ELDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL 128
Y F +P Q L + +VL+ A T +GKT AE AI F + +Y +PL
Sbjct: 1331 YKFTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTSKAVYIAPL 1390
Query: 129 KALSNQKYRELHQEF-----KDVGLMTGDVTLS----PNASCLVMTTEILRGML--YRGS 177
KAL ++ + K V +TGDVT A +V T E G+ ++
Sbjct: 1391 KALVRERIEDWKVRIEEKLGKKVVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQNR 1450
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWEESII---FLPP----AIKMVFLSATMSNATQFA 230
+++V+ +I DEIH + D ERG V E + F+ +++V LS ++NA A
Sbjct: 1451 SYVQKVSILIIDEIHLLGD-ERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDLA 1509
Query: 231 EWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQ 290
+W+ ++++ RP PL+ ++ Q
Sbjct: 1510 DWL-NINQMGLFNFRPSVRPVPLEVHI--------------------------------Q 1536
Query: 291 KIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMS 350
G+ RMA+ + F+ ++ K PV++F SRR+ ++ +
Sbjct: 1537 GFPGQH----YCPRMARMNKPA-----FQAIRSHSPAK--PVLIFVSSRRQTRLTSLDLI 1585
Query: 351 KLDFNTQEEKDTVEQVFQNAVDCLNE-EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKEL 409
+ K ++ + D + D NL L GI +HH+GL ++
Sbjct: 1586 AFLATEDDPKQWLKMDEREMNDIIGTVRDSNLKLT------LAFGIGMHHAGLHERDRKT 1639
Query: 410 VELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGS--GEYIQMSGRA 467
VE LF ++ L AT T A G+N PA V+ + +DG + RY+ + +QM GRA
Sbjct: 1640 VEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRA 1699
Query: 468 GRRGKDDRGICIIMVDE 484
GR DD+G +I+V +
Sbjct: 1700 GRPQFDDQGKAVILVHD 1716
Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 114/464 (24%), Positives = 186/464 (40%), Gaps = 95/464 (20%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFR----------DKQRVIYTSPLKALSNQKYRELH 140
NE++L+ A T AGKT +A + R D+ +++Y +P+KAL+ +
Sbjct: 501 NENMLICAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKDEFKIVYVAPMKALAAEMTNYFS 560
Query: 141 QEFKDVGL----MTGDVTLSPN----ASCLVMTTEILRGMLYR--GSEVLKE-VAWVIFD 189
+ + +G+ +TGD+ LS LV T E + + G L + V +I D
Sbjct: 561 KRLEPLGITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQLVKLLILD 620
Query: 190 EIHYMKDRERGVVWEESIIF--------LPPAIKMVFLSATMSNATQFAEWICHLHKQP- 240
E+H + + +RG V E SI+ I+++ LSAT+ N A + LH P
Sbjct: 621 EVHLLHE-DRGPVLE-SIVARTLRQVESTQSMIRILGLSATLPNYLDVATF---LHVNPY 675
Query: 241 CHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGK 300
+ Y D R P+ P+G + + + K Q + LKQ + G +
Sbjct: 676 IGLFYFDSRFRPV-----PLGQTFIGIKTTNKVQQLNHMDEVCYENVLKQIMAGHQ---- 726
Query: 301 ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNT---- 356
V+VF +R + AM++ + N
Sbjct: 727 -------------------------------VMVFVHARNATVRTAMALREKAKNNGHIC 755
Query: 357 ---QEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELL 413
+ Q + N++ R L G ++HH+G+L + LVE L
Sbjct: 756 HFLSPQGSDYGQAEKQVQRSRNKQLREL---------FPDGFSIHHAGMLRQDRSLVENL 806
Query: 414 FQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSG--EYIQMSGRAGRRG 471
F G +K L T T A G+N+PA VV + + ++ G + +Q+ GRAGR
Sbjct: 807 FSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQ 866
Query: 472 KDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILN 515
D G II+ + L +L + P+ S F S LN
Sbjct: 867 FDKFGEGIIITTHDKLSHYL--TLLTQQNPIESQFLESLADNLN 908
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 116/452 (25%), Positives = 195/452 (43%), Gaps = 87/452 (19%)
Query: 62 NPVYNGEMAKTYSFELDPFQRVSV----ACLERNESVLVSAHTSAGKTAVAEYAIAMAFR 117
+PV G AK +SF F V + ++ V A T +GKT AE A A
Sbjct: 1121 DPVLEGICAKRFSF----FNAVQTQFFHTIYHTDTNIFVGAPTGSGKTMAAELATWRALH 1176
Query: 118 D--KQRVIYTSPLKALSNQKYREL-HQEFKDVGL----MTGD----VTLSPNASCLVMTT 166
+ K +V+Y +P+KAL ++ ++ H+ + +G+ +TGD V NA+ ++ T
Sbjct: 1177 NYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGISMIELTGDTNPDVKAVTNANIIITTP 1236
Query: 167 EILRGML--YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP-------PAIKMV 217
E G+ ++ + +++V+ +I DEIH + +RG V E + + ++++
Sbjct: 1237 EKWDGITRSWKSRKYVQDVSLIILDEIHLLGS-DRGPVLEMIVSRMNYVASQTNKKVRVL 1295
Query: 218 FLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFRE 277
LS ++NA A W+ + RP PL+ Y+
Sbjct: 1296 GLSTAVANANDLANWLNI--RDGLFNFRHSVRPVPLEIYI-------------------- 1333
Query: 278 DNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSF 337
D F GR S F+ +K QPV++F
Sbjct: 1334 DGF---------------------PGRAYCPRMMSMNKPAFQAIKT--HSPTQPVLIFVS 1370
Query: 338 SRRECEQHA---MSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394
SRR+ A ++ L+ N + E+ + V + ED++L +L LP G
Sbjct: 1371 SRRQTRLTAKDLIAFCGLEDNPRRFLYMDEEELEMIVSEV--EDKSL---KLALPF---G 1422
Query: 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGD--SH 452
IA+HH+GL +++ E LF V+ L AT T A G+N PA V+ + +D +
Sbjct: 1423 IALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVNTPAHLVIVKGTEYYDAKIGGY 1482
Query: 453 RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484
+ + + +QM GRAGR D+ G+ I V +
Sbjct: 1483 KDMDLTDVLQMLGRAGRPQFDNSGVARIFVQD 1514
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 105/440 (23%), Positives = 182/440 (41%), Gaps = 105/440 (23%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAF-------------------RDKQRVIYTSPLKAL 131
NE++L+ A T AGKT VA A+ RD +++Y +P+KAL
Sbjct: 293 NENMLICAPTGAGKTDVALLAMLQTISNYVESMNLMDESEPLDVHRDDFKIVYIAPMKAL 352
Query: 132 SNQKYRELHQEFKDVGL----MTGDVTLSPN----ASCLVMTTE---ILRGMLYRGSEVL 180
+ + ++ + +GL +TGD+ L+ LV T E ++ +++
Sbjct: 353 AAEVVEKMGKRLAWLGLKTRELTGDMQLTKTEIAETQILVTTPEKWDVVTRKSVGDTQLA 412
Query: 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFLP-------PAIKMVFLSATMSNATQFAEWI 233
++V VI DE+H + D ERG V E + I++V LSAT+ N A+++
Sbjct: 413 EKVRLVIIDEVHMLHD-ERGAVIESLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFL 471
Query: 234 CHLHKQPCHVVYTDFRPTPL-QHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKI 292
+ + FRP P+ QH++
Sbjct: 472 GVNRYKGLFYFSSAFRPCPIEQHFI----------------------------------- 496
Query: 293 GGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL 352
K S ++ D K++K+I E V++F SR+E A + +
Sbjct: 497 -----GAKGSPKIVNSNIDEACFD--KVLKLIQEG--HQVMIFVHSRKETINSAKKLREQ 547
Query: 353 DF---------NTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLL 403
F N+Q EK ++ Q ++ N+E + L K + +H++G+L
Sbjct: 548 FFHEGEADLLDNSQHEKYSLAQ--RDVSKSKNKE---------LKELFKYSMGIHNAGML 596
Query: 404 PVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSG--EYI 461
+ L E LF G++K L T T A G+N+PA V+ + +D ++ G + +
Sbjct: 597 RSDRHLTERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVL 656
Query: 462 QMSGRAGRRGKDDRGICIIM 481
Q+ GRAGR + + I+
Sbjct: 657 QIFGRAGRPQFESSAVAYII 676
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 67/350 (19%)
Query: 92 ESVLVSAHTSAGKTAVAEYA-IAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMT 150
++++++ T++GKT V+E + + + +Y PLKAL+ +KYRE +E++ +GL
Sbjct: 40 KNLVLAIPTASGKTLVSEIVMVNKLLSEGGKAVYLVPLKALAEEKYREF-KEWEVLGLRV 98
Query: 151 GDVTLSPNAS--------CLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVV 202
T +++ +V T E +L G+ +K+V V+ DE+H + +RG
Sbjct: 99 AATTGDYDSTDEWLGRYDIIVATAEKFDSLLRHGASWIKDVKLVVADEVHLIGSYDRGAT 158
Query: 203 WEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGG 262
E + + +++ LSAT+ NA + AEW+ +V +D+RP L+ VF +G
Sbjct: 159 LEMILTHMLGKAQILALSATVGNAEELAEWL------DASLVVSDWRPVELRKGVFHLG- 211
Query: 263 SGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVK 322
+ F ED KI EN + S + VK
Sbjct: 212 ----------QLFWEDG-----------KIDHYPENWE--------------SLVLDAVK 236
Query: 323 MIMERKFQPVIVFSFSRRECEQHAMSMSK--LDFNTQEEKDTVEQVFQNAVDCLNEEDRN 380
K + +VF +RR E+ A+S+S T+ E +E++ + D
Sbjct: 237 -----KGKQALVFVNTRRSAEKEAISLSSKVSKLLTKPETRRLEELISSIEDN------- 284
Query: 381 LPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAM 430
P E + LK G+A HH+GL + L+E F+ GL+K + AT T M
Sbjct: 285 -PTTEKLKRALKGGVAFHHAGLSRAERTLIEDAFRNGLIKVITATPTLCM 333
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%)
Query: 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEM 488
+ G+N+PA V+ K++ I E QM GRAGR D G II+ +
Sbjct: 735 SAGINLPAFRVIIRDTKRYANFGWTDIPVLEIQQMMGRAGRPKYDKVGEAIIVARTEDPK 794
Query: 489 NTLKDMVLGKPAPLVS 504
+ + GKP L S
Sbjct: 795 KLIDRYIHGKPEKLFS 810
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 113/444 (25%), Positives = 185/444 (41%), Gaps = 76/444 (17%)
Query: 66 NGEMAKTYSF-ELDPFQRVSVACLERNES-VLVSAHTSAGKTAVAEYAIAMAFR--DKQR 121
N E Y F +P Q L ++ VL+ A T +GKT AE AI F +
Sbjct: 877 NREYESLYKFTHYNPIQTQIFHTLYHTDTNVLLGAPTGSGKTIAAEMAIFRVFNMYPTSK 936
Query: 122 VIYTSPLKALSNQKYRELHQEFKD-----VGLMTGDVTLS----PNASCLVMTTEILRGM 172
V+Y +PLKAL ++ + ++ V +TGD T A +V T E G+
Sbjct: 937 VVYIAPLKALVRERIEDWKIRIEEKLGRKVVELTGDNTPDMRAIAQADLIVTTPEKWDGV 996
Query: 173 L--YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII---FLPP----AIKMVFLSATM 223
++ +++VA +I DEIH + + +RG V E + F+ +++V LS +
Sbjct: 997 SRSWQNRSYVQKVAILIIDEIHLLGE-DRGPVLEVIVSRTNFISSHTSKTVRVVGLSTAL 1055
Query: 224 SNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKL 283
+NA A+W+ + + RP PL+ ++ + F ++
Sbjct: 1056 ANARDLADWLG-IGQVGLFNFRPSVRPVPLEVHI---------------QGFPGQHYCPR 1099
Query: 284 QDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECE 343
T K R + A +PV++F SRR+
Sbjct: 1100 MATMNKPVFQAIRTHSPA----------------------------KPVLIFVSSRRQTR 1131
Query: 344 QHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE-EDRNLPAIELMLPLLKRGIAVHHSGL 402
A+ + + K + Q + D + + NL L GI +HH+GL
Sbjct: 1132 LTALDLIAFLATEDDPKQWLHQDEREMTDIIATIRESNLKLT------LAFGIGMHHAGL 1185
Query: 403 LPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGS--GEY 460
++ VE LF ++ L AT T A G+N PA V+ + +DG + RY+ +
Sbjct: 1186 HERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVDYPITDV 1245
Query: 461 IQMSGRAGRRGKDDRGICIIMVDE 484
+QM GRAGR DD+G +I+V +
Sbjct: 1246 LQMMGRAGRPQFDDQGKAVILVHD 1269
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 117/459 (25%), Positives = 186/459 (40%), Gaps = 84/459 (18%)
Query: 91 NESVLVSAHTSAGKTAVAEYAIAMAFR-----------DKQRVIYTSPLKALSNQKYREL 139
NE++L+ A T AGKT +A I R D+ +++Y +P+KAL+ +
Sbjct: 89 NENLLICAPTGAGKTNIAMLTILHEIRQHLQPGGVIRKDQFKIVYVAPMKALAAEMTNYF 148
Query: 140 HQEFKDVGL----MTGDVTLSPN----ASCLVMTTEILRGMLYR--GSEVLKEVA-WVIF 188
+ + +G+ +TGD+ L+ LV T E + + G L +V +I
Sbjct: 149 SKRLEPLGIAVKELTGDMQLTKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQVVRLLIL 208
Query: 189 DEIHYMKDRERGVVWEESII-------FLPPAIKMVFLSATMSNATQFAEWICHLHKQP- 240
DE+H + + +RG V E + I+++ LSAT+ N A + LH P
Sbjct: 209 DEVHLLHE-DRGPVLESLVARTLRQVESTQSMIRILGLSATLPNYLDVATF---LHVNPF 264
Query: 241 CHVVYTD--FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRREN 298
+ Y D FRP PL G S + + K Q D + LKQ G +
Sbjct: 265 IGLFYFDSRFRPVPL-------GQSFVGIKTTNKVQQLHDMEEVCYEKVLKQIKAGHQ-- 315
Query: 299 GKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQE 358
V+VF +R + AMS+ ++ N E
Sbjct: 316 ---------------------------------VMVFVHARNSTVRTAMSLIEMAKNRGE 342
Query: 359 EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGL 418
+ QV Q A E+ + M + G +HH+G+L + L+E +F G
Sbjct: 343 L--SFFQVDQGADYGQCEKQIQRSRNKQMREMFPDGFGIHHAGMLRQDRSLMESMFSRGY 400
Query: 419 VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSG--EYIQMSGRAGRRGKDDRG 476
+K L T T A G+N+PA V+ +D + G + +Q+ GRAGR D G
Sbjct: 401 LKVLVCTATLAWGVNLPAHAVIIKGTNIYDAKRGTLVDLGILDVMQIFGRAGRPQFDKYG 460
Query: 477 ICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILN 515
I+ + L +L + P+ S F+ S LN
Sbjct: 461 EGTIITTHDKLSHYLT--LLTQQNPIESQFQQSLADNLN 497
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 112/433 (25%), Positives = 185/433 (42%), Gaps = 88/433 (20%)
Query: 86 ACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-----------DKQRVIYTSPLKALSNQ 134
A LE +E++L+ A T AGKT VA + D ++IY +P+++L +
Sbjct: 491 AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQE 550
Query: 135 KYRELHQEFKDVGL----MTGDVTLSPN----ASCLVMTTEILRGMLYRGSE--VLKEVA 184
+ G+ +TGD L +V T E + +G E + V
Sbjct: 551 MVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVR 610
Query: 185 WVIFDEIHYMKDRERGVVWE-------ESIIFLPPAIKMVFLSATMSNATQFAEWICHLH 237
+I DEIH + D +RG V E +I ++++ LSAT+ N A + L
Sbjct: 611 LIILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATF---LR 666
Query: 238 KQPCH-VVYTD--FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGG 294
P + Y D FRP PL+ Y+ + EK+ + ++ + + +KI
Sbjct: 667 VDPAKGLFYFDNSFRPVPLEQ---------TYVGITEKKAIKR---FQIMNEIVYEKI-- 712
Query: 295 RRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDF 354
M G V+VF SR+E + A ++ +
Sbjct: 713 ----------MEHAGKNQ-------------------VLVFVHSRKETGKTARAIRDMCL 743
Query: 355 NTQEEKDTVEQVFQN---AVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVE 411
EKDT+ + + + L E +EL LL G A+HH+G+ V + LVE
Sbjct: 744 ----EKDTLGLFLREGSASTEVLRTEAEQCKNLELK-DLLPYGFAIHHAGMTRVDRTLVE 798
Query: 412 LLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY--IGSGEYIQMSGRAGR 469
LF + ++ L +T T A G+N+PA TV+ + + + R+ +G+ + +QM GRAGR
Sbjct: 799 DLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGR 858
Query: 470 RGKDDRGICIIMV 482
D +G I++
Sbjct: 859 PQYDTKGEGILIT 871
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 113/436 (25%), Positives = 190/436 (43%), Gaps = 89/436 (20%)
Query: 77 LDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIA-MAFRDKQ-RVIYTSPLKALSN 133
+P Q +V +++V V A T +GKT AE+AI M + + R +Y +P++AL+
Sbjct: 1328 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAE 1387
Query: 134 QKYRELHQEFKD-----VGLMTG----DVTLSPNASCLVMTTEI--LRGMLYRGSEVLKE 182
Q Y + +++F+D V L+TG D+ L + ++ T E + ++ + ++
Sbjct: 1388 QVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQN 1447
Query: 183 VAWVIFDEIHYMKDRERGVVWE---------ESIIFLPPAIKMVFLSATMSNATQFAEWI 233
+ + DE+H + E G V E S I P I++V LS+++SNA A W+
Sbjct: 1448 INLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERP--IRIVALSSSLSNAKDVAHWL 1504
Query: 234 -CHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKI 292
C + + RP PL+ ++ G N Q L
Sbjct: 1505 GC--SATSTFNFHPNVRPVPLELHI-----QGF-------------NISHTQTRLLS--- 1541
Query: 293 GGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL 352
MAK ++ + +K PVIVF SR++ ++ +
Sbjct: 1542 ------------MAKP--------VYHAITKHSPKK--PVIVFVPSRKQTR-----LTAI 1574
Query: 353 DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIE-----LMLPLLKRGIAVHHSGLLPVIK 407
D T D Q F + C E+D +P +E + L G+ H GL P+ +
Sbjct: 1575 DILTTCAADIQRQRF---LHC-TEKDL-IPYLEKLSDSTLKETLLNGVGYLHEGLSPMER 1629
Query: 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEY--IQMSG 465
LVE LF G ++ + A+ + G+N+ A V+ + ++G H Y+ Y +QM G
Sbjct: 1630 RLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVG 1689
Query: 466 RAGRRGKDDRGICIIM 481
A R +DD G C+IM
Sbjct: 1690 HANRPLQDDEGRCVIM 1705
>sp|Q9P7T8|YIW2_SCHPO Uncharacterized helicase C694.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC694.02 PE=3 SV=1
Length = 1717
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 111/209 (53%), Gaps = 23/209 (11%)
Query: 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR--VIYTSPLKAL 131
+F+ D +QR ++ L+R+ESV V A TS+GKT ++ YA+ RD VIY +P KAL
Sbjct: 733 AFDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVAPTKAL 792
Query: 132 SNQKYRELHQEFKD---------VGLMTGDVTLSPNASCLVMTT--EILRGMLYR---GS 177
NQ E++ F + T D ++ +C V+ T +L+ ML + +
Sbjct: 793 VNQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQPALAN 852
Query: 178 EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHL- 236
++ +IFDEIH + E G+V EE ++ L P +V LSAT+ N +F W+ L
Sbjct: 853 AWCPKIRRIIFDEIHCIGQMEDGLV-EEQLLLLAPC-PIVALSATVGNPQEFQVWLSALQ 910
Query: 237 --HKQPCHVVYTDFRPTPLQHYVFPVGGS 263
H P H++ + R + L+ +V+ GG+
Sbjct: 911 RAHSYPIHLIVHEHRYSDLRKFVY--GGA 937
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 7/92 (7%)
Query: 385 ELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV 444
E + L RGI +HHSGL +++VE+LF+ G + + AT T ++G+NMP +TVVF
Sbjct: 1215 EWYVDALYRGIGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFL-- 1272
Query: 445 KKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRG 476
GDS + + + + Q +GRAGRRG D G
Sbjct: 1273 ----GDSLQ-LNALNFHQAAGRAGRRGFDLLG 1299
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 122/467 (26%), Positives = 195/467 (41%), Gaps = 90/467 (19%)
Query: 77 LDPFQ-RVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ------------RVI 123
L+P Q +V A E + ++L+ A T +GKT +A + A +++
Sbjct: 499 LNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIV 558
Query: 124 YTSPLKALSNQKYRELHQEFKDVGL----MTGDVTLS----PNASCLVMTTEILRGMLYR 175
Y +PLKAL ++ RE + +G+ +TGD LS LV T E + R
Sbjct: 559 YIAPLKALVQEQVREFQRRLAFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKW-DITTR 617
Query: 176 GSE---VLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK-------MVFLSATMSN 225
S +++ V +I DEIH + D +RG V E + A K ++ LSAT+ N
Sbjct: 618 NSNNLAIVELVRLLIIDEIHLLHD-DRGPVLESIVARTFWASKYGQEYPRIIGLSATLPN 676
Query: 226 ATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQD 285
++ + K+ + FRP PL
Sbjct: 677 YEDVGRFL-RVPKEGLFYFDSSFRPCPLS------------------------------- 704
Query: 286 TFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQH 345
Q+ G +E A + K+++ I E +IVF SR+E +
Sbjct: 705 ----QQFCGIKERNSLKKLKAMNDACYE-----KVLESINEG--NQIIVFVHSRKETSRT 753
Query: 346 AMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKR----GIAVHHSG 401
A + N E++ ++ +N D +++ A ++ P L++ GI HH+G
Sbjct: 754 ATWLK----NKFAEENITHKLTKN--DAGSKQILKTEAANVLDPSLRKLIESGIGTHHAG 807
Query: 402 LLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF--TAVKKWDGDSHRYIGSGE 459
L + L E LF +GL++ L T T A G+N+PA TV+ T V + S + +
Sbjct: 808 LTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQD 867
Query: 460 YIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTF 506
+QM GRAGR D G II+ D+ L VL + P+ S F
Sbjct: 868 VLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLS--VLNQQLPIESQF 912
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 26/183 (14%)
Query: 75 FELDPFQRVSVACLER----NESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSP-- 127
FE F ++ E N+SV V + GKTA+AE A+ +R +K R +Y +P
Sbjct: 1343 FEFKTFNKIQSQVFESLYNSNDSVFVGSGKGTGKTAMAELALLNHWRQNKGRAVYINPSG 1402
Query: 128 -----LKALSNQKYRELHQEFKDVGLMTGDVTLSPN---ASCLVMTTEILRGML---YRG 176
L + N+++ L K + + D +L+ S +++ T + +L +R
Sbjct: 1403 EKIDFLLSDWNKRFSHLAGG-KIINKLGNDPSLNLKLLAKSHVLLATPVQFELLSRRWRQ 1461
Query: 177 SEVLKEVAWVIFDEIHYMKDRERGVVWEESI---IF----LPPAIKMVFLSATMSNATQF 229
+ ++ + +I+D+ H + G V+E I IF L I+ V LS ++NA F
Sbjct: 1462 RKNIQSLELMIYDDAHEISQGVYGAVYETLISRMIFIATQLEKKIRFVCLSNCLANARDF 1521
Query: 230 AEW 232
EW
Sbjct: 1522 GEW 1524
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 343,854,694
Number of Sequences: 539616
Number of extensions: 14954200
Number of successful extensions: 51255
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 50666
Number of HSP's gapped (non-prelim): 562
length of query: 955
length of database: 191,569,459
effective HSP length: 127
effective length of query: 828
effective length of database: 123,038,227
effective search space: 101875651956
effective search space used: 101875651956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)