Query 002183
Match_columns 955
No_of_seqs 475 out of 3751
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 18:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0948 Nuclear exosomal RNA h 100.0 4E-212 9E-217 1727.9 76.6 909 35-955 95-1041(1041)
2 KOG0947 Cytoplasmic exosomal R 100.0 5E-169 1E-173 1418.6 73.5 887 63-955 284-1248(1248)
3 COG4581 Superfamily II RNA hel 100.0 4E-136 9E-141 1206.6 75.0 899 38-955 87-1041(1041)
4 PRK02362 ski2-like helicase; P 100.0 5.4E-53 1.2E-57 516.7 45.8 428 63-539 9-457 (737)
5 PRK00254 ski2-like helicase; P 100.0 1.7E-50 3.7E-55 493.5 45.1 420 65-539 11-447 (720)
6 PRK01172 ski2-like helicase; P 100.0 1.8E-50 3.8E-55 491.6 42.4 409 66-538 12-436 (674)
7 COG1204 Superfamily II helicas 100.0 4.9E-51 1.1E-55 486.8 31.4 427 66-539 20-468 (766)
8 KOG0331 ATP-dependent RNA heli 100.0 1.7E-50 3.8E-55 449.8 30.6 348 58-498 94-463 (519)
9 PF08148 DSHCT: DSHCT (NUC185) 100.0 3.4E-51 7.5E-56 410.2 15.1 177 776-955 1-180 (180)
10 KOG0330 ATP-dependent RNA heli 100.0 1E-48 2.2E-53 406.9 26.2 325 66-494 72-415 (476)
11 COG0513 SrmB Superfamily II DN 100.0 6E-47 1.3E-51 441.5 33.5 326 67-493 41-388 (513)
12 COG1202 Superfamily II helicas 100.0 1E-47 2.2E-52 415.3 24.2 348 63-503 202-580 (830)
13 KOG0952 DNA/RNA helicase MER3/ 100.0 2.5E-47 5.5E-52 437.9 28.4 401 71-535 104-542 (1230)
14 PRK11776 ATP-dependent RNA hel 100.0 1.9E-46 4.2E-51 437.5 35.2 319 65-485 14-349 (460)
15 PTZ00110 helicase; Provisional 100.0 2.4E-46 5.1E-51 440.8 33.7 328 61-485 136-484 (545)
16 PRK10590 ATP-dependent RNA hel 100.0 3.8E-46 8.3E-51 433.0 33.1 320 63-483 9-352 (456)
17 PRK04837 ATP-dependent RNA hel 100.0 3.1E-46 6.7E-51 431.1 31.7 321 63-485 16-362 (423)
18 KOG0328 Predicted ATP-dependen 100.0 4.9E-47 1.1E-51 377.8 20.1 327 49-485 32-373 (400)
19 KOG0338 ATP-dependent RNA heli 100.0 4.6E-46 9.9E-51 397.7 27.6 338 59-497 185-544 (691)
20 PLN00206 DEAD-box ATP-dependen 100.0 1.7E-45 3.8E-50 432.5 33.8 319 63-485 129-475 (518)
21 KOG0345 ATP-dependent RNA heli 100.0 2.3E-45 4.9E-50 390.3 29.8 321 64-482 15-363 (567)
22 PRK11192 ATP-dependent RNA hel 100.0 6E-45 1.3E-49 422.4 35.8 317 65-481 11-350 (434)
23 PRK04537 ATP-dependent RNA hel 100.0 3.3E-45 7.2E-50 432.3 34.2 318 65-484 19-363 (572)
24 PRK11634 ATP-dependent RNA hel 100.0 7.2E-45 1.6E-49 431.4 35.3 319 65-485 16-352 (629)
25 KOG0342 ATP-dependent RNA heli 100.0 3.3E-45 7.1E-50 392.2 25.3 333 57-485 84-439 (543)
26 PRK01297 ATP-dependent RNA hel 100.0 1.2E-43 2.5E-48 415.2 39.0 320 63-484 95-441 (475)
27 KOG0333 U5 snRNP-like RNA heli 100.0 1.1E-44 2.4E-49 388.8 27.6 333 63-495 253-636 (673)
28 TIGR03817 DECH_helic helicase/ 100.0 7.1E-44 1.5E-48 431.1 36.0 338 66-484 25-385 (742)
29 PTZ00424 helicase 45; Provisio 100.0 8E-44 1.7E-48 409.9 32.4 318 69-485 42-374 (401)
30 KOG0340 ATP-dependent RNA heli 100.0 7.2E-44 1.6E-48 366.5 24.8 351 58-503 10-381 (442)
31 KOG0343 RNA Helicase [RNA proc 100.0 1.4E-43 3.1E-48 381.7 27.6 341 57-497 71-434 (758)
32 KOG0326 ATP-dependent RNA heli 100.0 1.6E-44 3.4E-49 365.5 17.7 337 72-507 102-453 (459)
33 TIGR00614 recQ_fam ATP-depende 100.0 1.8E-42 3.9E-47 403.4 35.0 320 69-496 3-343 (470)
34 PRK13767 ATP-dependent helicas 100.0 5E-42 1.1E-46 423.4 37.4 377 74-534 29-455 (876)
35 PLN03137 ATP-dependent DNA hel 100.0 3.3E-42 7.2E-47 411.0 32.0 322 67-496 450-797 (1195)
36 KOG0336 ATP-dependent RNA heli 100.0 4.5E-43 9.8E-48 365.0 21.1 318 70-485 235-574 (629)
37 KOG0347 RNA helicase [RNA proc 100.0 1.2E-43 2.6E-48 382.5 17.0 445 63-592 189-680 (731)
38 KOG0348 ATP-dependent RNA heli 100.0 1.3E-42 2.8E-47 373.4 22.7 376 56-485 138-556 (708)
39 KOG0335 ATP-dependent RNA heli 100.0 9.2E-42 2E-46 373.3 25.7 312 70-481 89-442 (482)
40 PRK11057 ATP-dependent DNA hel 100.0 2.1E-40 4.6E-45 395.8 35.4 319 67-495 15-352 (607)
41 KOG0951 RNA helicase BRR2, DEA 100.0 1.5E-40 3.4E-45 385.5 28.3 385 74-510 306-725 (1674)
42 TIGR01389 recQ ATP-dependent D 100.0 8.5E-40 1.8E-44 392.1 34.4 318 68-495 4-340 (591)
43 COG1201 Lhr Lhr-like helicases 100.0 6.2E-40 1.3E-44 385.3 31.7 345 66-502 12-383 (814)
44 PRK09751 putative ATP-dependen 100.0 8E-40 1.7E-44 407.5 32.6 384 96-529 1-434 (1490)
45 KOG0346 RNA helicase [RNA proc 100.0 1E-39 2.3E-44 343.9 28.3 334 65-497 29-424 (569)
46 KOG0341 DEAD-box protein abstr 100.0 6.1E-41 1.3E-45 346.8 13.7 322 63-485 178-528 (610)
47 KOG0949 Predicted helicase, DE 100.0 8.7E-39 1.9E-43 363.4 28.3 431 73-517 508-1077(1330)
48 KOG0339 ATP-dependent RNA heli 100.0 2.2E-38 4.7E-43 338.3 25.3 315 72-485 240-575 (731)
49 KOG0332 ATP-dependent RNA heli 100.0 2.3E-38 5E-43 327.7 24.3 327 72-493 107-451 (477)
50 KOG0350 DEAD-box ATP-dependent 100.0 2.3E-38 5.1E-43 338.8 19.9 330 71-496 153-550 (620)
51 TIGR00580 mfd transcription-re 100.0 5.9E-37 1.3E-41 373.5 33.7 310 65-485 440-770 (926)
52 KOG0327 Translation initiation 100.0 7.9E-38 1.7E-42 327.7 20.1 324 49-485 31-370 (397)
53 PRK10917 ATP-dependent DNA hel 100.0 2.3E-36 5E-41 364.7 35.0 310 65-485 250-589 (681)
54 KOG4284 DEAD box protein [Tran 100.0 1.7E-37 3.7E-42 339.4 20.3 334 65-492 35-386 (980)
55 PRK10689 transcription-repair 100.0 3.3E-36 7.1E-41 374.7 33.8 309 65-484 589-918 (1147)
56 COG0514 RecQ Superfamily II DN 100.0 1E-36 2.2E-41 346.1 25.9 313 67-485 7-337 (590)
57 KOG0950 DNA polymerase theta/e 100.0 9E-37 2E-41 350.6 25.5 402 66-507 212-632 (1008)
58 KOG0334 RNA helicase [RNA proc 100.0 6.3E-37 1.4E-41 356.9 23.5 317 68-482 378-719 (997)
59 TIGR00643 recG ATP-dependent D 100.0 3.9E-36 8.4E-41 360.7 30.2 313 66-484 225-565 (630)
60 KOG0344 ATP-dependent RNA heli 100.0 2.4E-36 5.2E-41 332.0 23.5 317 70-485 151-495 (593)
61 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.5E-34 1.4E-38 343.7 31.7 314 79-485 5-336 (819)
62 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3E-34 6.6E-39 339.4 27.5 312 65-481 4-388 (844)
63 PHA02558 uvsW UvsW helicase; P 100.0 3.5E-33 7.5E-38 327.1 31.5 325 75-483 113-453 (501)
64 KOG0337 ATP-dependent RNA heli 100.0 8.9E-35 1.9E-39 305.5 14.6 329 66-494 32-379 (529)
65 PRK11664 ATP-dependent RNA hel 100.0 2.5E-33 5.5E-38 339.6 29.2 315 78-485 7-339 (812)
66 PF13234 rRNA_proc-arch: rRNA- 100.0 5.2E-34 1.1E-38 307.0 20.1 227 527-753 1-267 (268)
67 TIGR01587 cas3_core CRISPR-ass 100.0 4.1E-33 8.8E-38 315.7 26.3 295 93-485 1-336 (358)
68 PHA02653 RNA helicase NPH-II; 100.0 6E-32 1.3E-36 319.1 29.5 309 79-485 167-514 (675)
69 PRK09401 reverse gyrase; Revie 100.0 1.4E-31 3E-36 334.2 32.8 271 68-441 72-404 (1176)
70 COG1111 MPH1 ERCC4-like helica 100.0 3.4E-31 7.3E-36 287.2 31.0 365 76-485 15-481 (542)
71 COG1205 Distinct helicase fami 100.0 2.5E-31 5.5E-36 322.4 27.9 333 66-483 60-420 (851)
72 TIGR03158 cas3_cyano CRISPR-as 100.0 6.4E-31 1.4E-35 294.7 28.6 285 80-468 1-357 (357)
73 KOG0352 ATP-dependent DNA heli 100.0 3E-31 6.6E-36 278.4 20.3 339 67-497 9-373 (641)
74 KOG0351 ATP-dependent DNA heli 100.0 6.3E-31 1.4E-35 315.9 23.4 328 65-498 252-604 (941)
75 PRK13766 Hef nuclease; Provisi 100.0 1.9E-29 4.2E-34 313.2 37.1 365 73-485 12-479 (773)
76 TIGR00603 rad25 DNA repair hel 100.0 2.1E-29 4.5E-34 295.8 33.3 330 72-485 251-607 (732)
77 KOG0354 DEAD-box like helicase 100.0 1.7E-29 3.7E-34 290.0 30.3 365 74-484 60-528 (746)
78 KOG0329 ATP-dependent RNA heli 100.0 5.6E-31 1.2E-35 259.3 14.4 286 72-491 59-361 (387)
79 PRK14701 reverse gyrase; Provi 100.0 7E-30 1.5E-34 324.9 27.9 305 66-476 69-449 (1638)
80 TIGR01054 rgy reverse gyrase. 100.0 1.9E-29 4.1E-34 315.6 28.8 272 67-442 69-404 (1171)
81 PRK11131 ATP-dependent RNA hel 100.0 2E-29 4.3E-34 309.5 28.1 315 77-485 75-411 (1294)
82 COG1200 RecG RecG-like helicas 100.0 1.2E-27 2.7E-32 270.7 27.9 315 65-486 251-592 (677)
83 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1E-27 2.2E-32 295.7 28.0 315 78-485 69-404 (1283)
84 KOG0353 ATP-dependent DNA heli 100.0 6.7E-28 1.4E-32 249.3 20.2 312 68-483 85-465 (695)
85 PRK05580 primosome assembly pr 100.0 7.3E-27 1.6E-31 281.0 32.3 355 72-485 140-549 (679)
86 PRK12898 secA preprotein trans 100.0 3.4E-27 7.3E-32 274.2 27.9 123 71-195 98-255 (656)
87 COG1061 SSL2 DNA or RNA helica 100.0 1.4E-26 3.1E-31 265.8 32.5 332 71-470 31-376 (442)
88 PRK09200 preprotein translocas 100.0 3.8E-27 8.1E-32 279.5 27.2 358 70-482 72-540 (790)
89 COG4098 comFA Superfamily II D 100.0 7.4E-26 1.6E-30 233.1 30.7 310 72-484 93-415 (441)
90 TIGR03714 secA2 accessory Sec 100.0 9.1E-27 2E-31 273.5 27.3 344 72-481 66-535 (762)
91 PRK04914 ATP-dependent helicas 100.0 1.6E-25 3.4E-30 272.3 37.5 376 75-499 151-619 (956)
92 TIGR00963 secA preprotein tran 100.0 1.2E-26 2.5E-31 270.7 25.8 350 70-484 50-518 (745)
93 PRK09694 helicase Cas3; Provis 99.9 1.1E-25 2.5E-30 272.0 29.2 323 74-472 284-664 (878)
94 TIGR00595 priA primosomal prot 99.9 2.9E-25 6.3E-30 257.9 28.9 329 95-485 1-381 (505)
95 COG1197 Mfd Transcription-repa 99.9 8E-25 1.7E-29 261.0 29.7 307 64-484 582-912 (1139)
96 KOG0349 Putative DEAD-box RNA 99.9 2.4E-25 5.1E-30 234.2 14.1 293 121-482 288-612 (725)
97 KOG0922 DEAH-box RNA helicase 99.9 9.1E-24 2E-28 236.9 23.7 331 75-502 50-403 (674)
98 PRK11448 hsdR type I restricti 99.9 4.2E-23 9.2E-28 256.9 31.8 333 75-472 412-802 (1123)
99 COG1643 HrpA HrpA-like helicas 99.9 1.7E-23 3.6E-28 249.1 26.5 313 77-485 51-387 (845)
100 cd00268 DEADc DEAD-box helicas 99.9 6.2E-23 1.3E-27 213.2 19.0 174 67-242 11-201 (203)
101 KOG0951 RNA helicase BRR2, DEA 99.9 1.6E-22 3.4E-27 236.6 22.7 360 68-506 1136-1513(1674)
102 PRK13104 secA preprotein trans 99.9 3.6E-21 7.7E-26 227.9 29.0 123 71-195 77-215 (896)
103 PF00270 DEAD: DEAD/DEAH box h 99.9 3.8E-22 8.3E-27 200.7 15.7 147 78-224 1-163 (169)
104 KOG0924 mRNA splicing factor A 99.9 5.5E-21 1.2E-25 211.6 23.9 360 77-537 357-752 (1042)
105 PRK12904 preprotein translocas 99.9 6.8E-21 1.5E-25 225.5 25.8 350 71-485 76-575 (830)
106 KOG0923 mRNA splicing factor A 99.9 3E-21 6.5E-26 213.6 19.1 319 75-485 264-606 (902)
107 KOG0953 Mitochondrial RNA heli 99.9 6.8E-21 1.5E-25 207.6 20.3 307 92-517 192-508 (700)
108 PRK12906 secA preprotein trans 99.9 1.4E-20 3E-25 222.0 21.7 350 70-484 74-554 (796)
109 COG1198 PriA Primosomal protei 99.8 1.4E-19 3E-24 212.9 27.3 357 76-494 198-611 (730)
110 PLN03142 Probable chromatin-re 99.8 2.4E-19 5.1E-24 219.2 30.2 361 75-492 168-607 (1033)
111 KOG0920 ATP-dependent RNA heli 99.8 1.7E-19 3.8E-24 213.7 26.2 345 76-485 173-544 (924)
112 COG1203 CRISPR-associated heli 99.8 2.6E-19 5.7E-24 217.9 24.1 312 76-485 195-550 (733)
113 PRK12899 secA preprotein trans 99.8 1.1E-17 2.5E-22 197.7 30.3 121 75-195 91-228 (970)
114 PRK13107 preprotein translocas 99.8 4E-18 8.6E-23 201.5 25.2 123 71-195 77-215 (908)
115 KOG0926 DEAH-box RNA helicase 99.8 9.3E-19 2E-23 197.2 16.5 345 82-486 262-705 (1172)
116 TIGR01407 dinG_rel DnaQ family 99.8 1.3E-17 2.8E-22 207.4 28.1 65 73-137 242-310 (850)
117 TIGR00631 uvrb excinuclease AB 99.8 1.3E-17 2.8E-22 198.6 26.5 123 317-485 428-553 (655)
118 TIGR00348 hsdR type I site-spe 99.8 9.5E-17 2.1E-21 193.6 28.3 144 77-225 239-404 (667)
119 COG4096 HsdR Type I site-speci 99.8 3.2E-17 6.9E-22 188.6 20.6 338 76-470 165-525 (875)
120 COG1110 Reverse gyrase [DNA re 99.7 2.2E-16 4.7E-21 184.2 26.1 271 66-445 72-416 (1187)
121 PRK05298 excinuclease ABC subu 99.7 9.3E-16 2E-20 184.4 32.7 121 318-484 433-556 (652)
122 KOG1123 RNA polymerase II tran 99.7 1.3E-17 2.9E-22 179.4 14.0 301 77-472 303-636 (776)
123 COG0556 UvrB Helicase subunit 99.7 5.1E-16 1.1E-20 169.6 25.1 122 317-484 432-556 (663)
124 smart00487 DEXDc DEAD-like hel 99.7 1.1E-16 2.4E-21 164.7 18.7 155 74-228 6-175 (201)
125 KOG4150 Predicted ATP-dependen 99.7 6.3E-17 1.4E-21 176.1 15.2 326 77-484 287-641 (1034)
126 KOG0385 Chromatin remodeling c 99.7 1.6E-15 3.4E-20 171.5 26.1 363 74-493 165-608 (971)
127 PRK07246 bifunctional ATP-depe 99.7 1.7E-14 3.8E-19 177.0 30.2 67 73-140 242-313 (820)
128 KOG0925 mRNA splicing factor A 99.6 3.6E-15 7.7E-20 160.6 17.6 323 65-485 36-387 (699)
129 PRK08074 bifunctional ATP-depe 99.6 9.1E-14 2E-18 173.8 31.9 123 74-196 255-469 (928)
130 PF04851 ResIII: Type III rest 99.6 4.9E-15 1.1E-19 150.9 16.6 141 75-224 2-183 (184)
131 PRK12900 secA preprotein trans 99.6 4.2E-14 9.2E-19 168.2 23.9 119 315-482 582-710 (1025)
132 PRK12326 preprotein translocas 99.6 2E-13 4.4E-18 158.2 24.3 124 70-195 72-211 (764)
133 COG4889 Predicted helicase [Ge 99.6 1.1E-14 2.3E-19 165.9 13.3 360 64-482 149-585 (1518)
134 cd00046 DEXDc DEAD-like helica 99.6 4.8E-14 1E-18 136.3 14.6 132 92-223 1-144 (144)
135 KOG0952 DNA/RNA helicase MER3/ 99.6 3.8E-16 8.3E-21 182.0 -0.9 279 76-409 927-1228(1230)
136 KOG1000 Chromatin remodeling p 99.6 2.6E-13 5.7E-18 146.7 20.6 360 77-495 199-613 (689)
137 KOG0387 Transcription-coupled 99.5 4.2E-13 9E-18 153.1 23.0 353 77-485 206-658 (923)
138 PRK13103 secA preprotein trans 99.5 1.2E-12 2.5E-17 155.7 25.6 123 71-195 77-215 (913)
139 PF00271 Helicase_C: Helicase 99.5 3.9E-14 8.5E-19 122.5 8.7 73 391-471 6-78 (78)
140 cd00079 HELICc Helicase superf 99.5 2.1E-13 4.6E-18 130.5 11.8 104 328-480 27-130 (131)
141 TIGR03117 cas_csf4 CRISPR-asso 99.5 2.4E-11 5.2E-16 142.8 30.4 58 86-143 11-70 (636)
142 KOG0384 Chromodomain-helicase 99.5 2E-12 4.4E-17 153.6 20.4 354 74-485 368-811 (1373)
143 KOG0390 DNA repair protein, SN 99.5 1.8E-11 4E-16 143.8 27.1 384 76-494 238-717 (776)
144 PRK11747 dinG ATP-dependent DN 99.4 4.4E-11 9.6E-16 145.3 30.1 63 74-136 23-95 (697)
145 PRK14873 primosome assembly pr 99.4 6.2E-12 1.3E-16 149.8 20.0 123 95-224 164-304 (665)
146 COG1199 DinG Rad3-related DNA 99.4 6.4E-11 1.4E-15 145.0 28.7 69 73-141 12-85 (654)
147 PRK12903 secA preprotein trans 99.3 8.9E-11 1.9E-15 138.4 23.0 123 71-195 73-211 (925)
148 KOG0392 SNF2 family DNA-depend 99.3 9.2E-11 2E-15 139.2 22.7 360 76-486 975-1455(1549)
149 PF07652 Flavi_DEAD: Flaviviru 99.3 3.3E-12 7.1E-17 119.6 8.1 133 90-227 3-140 (148)
150 CHL00122 secA preprotein trans 99.3 2.1E-10 4.5E-15 136.2 24.7 124 70-195 70-209 (870)
151 KOG0389 SNF2 family DNA-depend 99.3 4.8E-11 1E-15 136.4 18.5 369 73-496 396-899 (941)
152 TIGR02562 cas3_yersinia CRISPR 99.3 3.4E-10 7.4E-15 136.0 23.4 148 77-226 409-637 (1110)
153 smart00490 HELICc helicase sup 99.3 1.8E-11 3.9E-16 106.5 8.3 72 392-471 11-82 (82)
154 TIGR00604 rad3 DNA repair heli 99.2 7.6E-10 1.6E-14 135.7 25.1 72 71-142 4-83 (705)
155 PRK12902 secA preprotein trans 99.2 1.1E-09 2.5E-14 129.7 24.8 123 71-195 80-218 (939)
156 PF00176 SNF2_N: SNF2 family N 99.1 1.7E-09 3.6E-14 119.4 17.5 153 80-236 1-187 (299)
157 KOG1002 Nucleotide excision re 99.1 1.9E-08 4.1E-13 109.4 23.0 124 329-499 638-763 (791)
158 PF02399 Herpes_ori_bp: Origin 99.0 2.8E-08 6E-13 117.0 23.0 319 92-484 50-387 (824)
159 KOG4439 RNA polymerase II tran 98.8 3.3E-07 7.2E-12 104.2 22.6 147 73-223 322-501 (901)
160 KOG0388 SNF2 family DNA-depend 98.8 1.6E-07 3.6E-12 106.2 17.8 123 315-485 1031-1154(1185)
161 KOG0386 Chromatin remodeling c 98.8 3E-08 6.4E-13 116.7 12.1 144 73-223 391-554 (1157)
162 KOG0921 Dosage compensation co 98.8 3.2E-08 6.9E-13 114.6 11.1 344 84-485 386-774 (1282)
163 PRK12901 secA preprotein trans 98.7 1.2E-06 2.5E-11 105.7 21.1 123 71-195 164-303 (1112)
164 COG0553 HepA Superfamily II DN 98.6 1.8E-06 3.9E-11 110.1 21.8 359 76-486 338-823 (866)
165 COG0610 Type I site-specific r 98.5 2.1E-06 4.5E-11 107.6 18.4 129 92-224 274-414 (962)
166 smart00489 DEXDc3 DEAD-like he 98.4 7.8E-07 1.7E-11 96.9 9.1 71 72-142 4-84 (289)
167 smart00488 DEXDc2 DEAD-like he 98.4 7.8E-07 1.7E-11 96.9 9.1 71 72-142 4-84 (289)
168 PF07517 SecA_DEAD: SecA DEAD- 98.4 1.3E-06 2.9E-11 92.6 10.5 123 71-195 72-210 (266)
169 PF13604 AAA_30: AAA domain; P 98.3 3.4E-06 7.4E-11 86.6 11.7 121 76-221 1-129 (196)
170 PF06862 DUF1253: Protein of u 98.3 0.00036 7.8E-09 79.0 27.4 292 119-495 37-424 (442)
171 PRK15483 type III restriction- 98.3 6.5E-06 1.4E-10 100.3 13.6 130 92-225 60-240 (986)
172 PF02562 PhoH: PhoH-like prote 98.2 6.8E-06 1.5E-10 83.7 10.3 122 77-220 5-153 (205)
173 KOG1015 Transcription regulato 98.1 4.3E-05 9.3E-10 89.7 14.2 95 395-497 1191-1290(1567)
174 PF13872 AAA_34: P-loop contai 98.0 6.4E-05 1.4E-09 80.0 13.4 147 76-224 37-221 (303)
175 KOG1803 DNA helicase [Replicat 98.0 1.6E-05 3.5E-10 90.2 8.5 69 72-140 181-250 (649)
176 TIGR00596 rad1 DNA repair prot 98.0 0.0012 2.5E-08 81.1 24.3 80 158-237 7-90 (814)
177 PF09848 DUF2075: Uncharacteri 97.9 2.8E-05 6.1E-10 87.7 9.6 93 93-196 3-97 (352)
178 TIGR01448 recD_rel helicase, p 97.9 0.0001 2.2E-09 90.4 14.6 128 69-221 316-451 (720)
179 PRK10536 hypothetical protein; 97.9 0.00015 3.3E-09 75.9 12.3 133 77-220 60-210 (262)
180 PF13245 AAA_19: Part of AAA d 97.8 5.8E-05 1.2E-09 64.3 7.3 56 84-139 2-62 (76)
181 COG0653 SecA Preprotein transl 97.8 0.0009 2E-08 80.3 19.4 123 71-195 75-213 (822)
182 KOG0391 SNF2 family DNA-depend 97.8 4.2E-05 9.2E-10 91.4 8.1 142 76-223 615-775 (1958)
183 PRK10875 recD exonuclease V su 97.8 0.00021 4.5E-09 85.3 13.5 143 71-220 145-299 (615)
184 TIGR01447 recD exodeoxyribonuc 97.8 0.00021 4.6E-09 85.1 13.6 136 78-220 147-293 (586)
185 KOG2340 Uncharacterized conser 97.6 0.002 4.3E-08 72.1 17.0 128 76-207 216-436 (698)
186 TIGR02768 TraA_Ti Ti-type conj 97.6 0.0006 1.3E-08 84.0 14.6 124 73-220 349-474 (744)
187 PF13086 AAA_11: AAA domain; P 97.6 0.00014 3E-09 76.9 7.6 65 77-141 2-75 (236)
188 PF12340 DUF3638: Protein of u 97.6 0.00049 1.1E-08 70.8 10.6 126 71-196 18-186 (229)
189 PRK13889 conjugal transfer rel 97.5 0.0009 2E-08 83.5 14.3 126 72-222 342-470 (988)
190 COG3421 Uncharacterized protei 97.5 0.0044 9.6E-08 70.5 18.1 130 97-227 3-169 (812)
191 PF13307 Helicase_C_2: Helicas 97.4 0.001 2.2E-08 66.4 10.8 120 325-485 5-151 (167)
192 KOG1132 Helicase of the DEAD s 97.4 0.00074 1.6E-08 80.0 10.1 75 69-143 14-134 (945)
193 PF13401 AAA_22: AAA domain; P 97.3 0.00045 9.7E-09 65.8 6.8 117 90-223 3-125 (131)
194 PRK06526 transposase; Provisio 97.3 0.0014 3.1E-08 69.9 11.0 109 86-224 93-202 (254)
195 KOG1802 RNA helicase nonsense 97.3 0.0016 3.5E-08 74.6 11.3 74 73-146 406-481 (935)
196 PRK13826 Dtr system oriT relax 97.3 0.0033 7.1E-08 79.1 15.0 126 73-222 378-505 (1102)
197 cd00009 AAA The AAA+ (ATPases 97.2 0.0025 5.4E-08 61.4 11.1 39 91-129 19-57 (151)
198 PRK08181 transposase; Validate 97.2 0.0044 9.5E-08 66.6 13.2 117 77-223 88-209 (269)
199 PRK04296 thymidine kinase; Pro 97.1 0.00077 1.7E-08 68.9 6.5 87 91-195 2-91 (190)
200 COG1875 NYN ribonuclease and A 97.1 0.0022 4.8E-08 69.2 9.9 138 68-220 219-385 (436)
201 PF00580 UvrD-helicase: UvrD/R 97.0 0.0014 2.9E-08 72.8 7.8 114 77-192 1-125 (315)
202 TIGR00376 DNA helicase, putati 97.0 0.0025 5.4E-08 77.1 10.5 67 76-142 157-224 (637)
203 smart00382 AAA ATPases associa 97.0 0.0014 3E-08 62.6 6.7 93 91-198 2-94 (148)
204 PHA02533 17 large terminase pr 96.9 0.0089 1.9E-07 70.6 13.0 141 73-222 56-209 (534)
205 PRK12723 flagellar biosynthesi 96.7 0.03 6.5E-07 63.3 15.3 125 91-236 174-309 (388)
206 PF05970 PIF1: PIF1-like helic 96.6 0.0036 7.8E-08 70.9 7.2 108 76-196 1-116 (364)
207 KOG1805 DNA replication helica 96.6 0.0073 1.6E-07 72.6 9.7 118 76-197 669-811 (1100)
208 PRK08727 hypothetical protein; 96.6 0.013 2.9E-07 61.9 10.4 35 92-126 42-76 (233)
209 PRK07952 DNA replication prote 96.5 0.031 6.7E-07 59.2 12.9 117 78-222 78-204 (244)
210 PRK08116 hypothetical protein; 96.5 0.013 2.8E-07 63.2 10.3 122 75-224 87-222 (268)
211 KOG0391 SNF2 family DNA-depend 96.5 0.014 3E-07 70.9 10.8 130 316-493 1264-1396(1958)
212 PRK12377 putative replication 96.4 0.025 5.4E-07 60.1 11.3 102 91-221 101-204 (248)
213 PRK08084 DNA replication initi 96.4 0.02 4.4E-07 60.6 10.7 37 91-127 45-81 (235)
214 PRK05703 flhF flagellar biosyn 96.4 0.069 1.5E-06 61.5 15.5 128 91-236 221-354 (424)
215 PHA03333 putative ATPase subun 96.4 0.052 1.1E-06 64.2 14.2 151 74-236 167-344 (752)
216 COG3587 Restriction endonuclea 96.3 0.0082 1.8E-07 71.2 7.6 130 93-226 76-245 (985)
217 PRK08903 DnaA regulatory inact 96.3 0.038 8.3E-07 58.2 12.1 49 79-127 26-78 (227)
218 PRK11889 flhF flagellar biosyn 96.3 0.089 1.9E-06 58.8 15.1 127 92-236 242-374 (436)
219 PRK05642 DNA replication initi 96.3 0.018 4E-07 60.9 9.6 36 92-127 46-81 (234)
220 PRK09183 transposase/IS protei 96.3 0.047 1E-06 58.7 12.6 56 78-134 86-144 (259)
221 KOG1131 RNA polymerase II tran 96.2 0.037 8E-07 62.2 11.2 73 69-141 8-89 (755)
222 PRK06893 DNA replication initi 96.2 0.019 4E-07 60.6 8.8 36 92-127 40-75 (229)
223 PRK06921 hypothetical protein; 96.2 0.041 8.9E-07 59.3 11.5 44 90-134 116-160 (266)
224 PRK06835 DNA replication prote 96.2 0.039 8.5E-07 61.1 11.5 45 90-135 182-226 (329)
225 TIGR02760 TraI_TIGR conjugativ 96.1 0.058 1.3E-06 73.2 14.7 66 72-137 425-492 (1960)
226 PRK11054 helD DNA helicase IV; 96.1 0.028 6.1E-07 68.5 10.8 83 74-171 194-280 (684)
227 COG1484 DnaC DNA replication p 96.0 0.028 6.1E-07 60.1 9.1 107 73-209 79-195 (254)
228 PRK14974 cell division protein 95.9 0.14 3E-06 56.8 14.6 122 92-225 141-266 (336)
229 TIGR03420 DnaA_homol_Hda DnaA 95.9 0.044 9.5E-07 57.6 10.3 37 89-125 36-72 (226)
230 PRK10919 ATP-dependent DNA hel 95.9 0.03 6.6E-07 68.7 10.2 86 76-173 2-91 (672)
231 PRK14712 conjugal transfer nic 95.8 0.053 1.2E-06 70.8 12.2 127 71-222 830-967 (1623)
232 cd01124 KaiC KaiC is a circadi 95.8 0.013 2.8E-07 59.6 5.6 49 93-142 1-49 (187)
233 TIGR03015 pepcterm_ATPase puta 95.7 0.077 1.7E-06 57.4 11.2 66 77-143 24-95 (269)
234 COG1444 Predicted P-loop ATPas 95.6 0.056 1.2E-06 65.0 10.4 136 73-226 208-359 (758)
235 PRK14722 flhF flagellar biosyn 95.6 0.069 1.5E-06 59.9 10.4 116 90-225 136-259 (374)
236 KOG0989 Replication factor C, 95.5 0.034 7.5E-07 59.0 7.3 119 79-224 39-170 (346)
237 cd01120 RecA-like_NTPases RecA 95.5 0.029 6.3E-07 55.2 6.6 41 94-134 2-42 (165)
238 PRK12402 replication factor C 95.4 0.064 1.4E-06 60.2 9.8 35 81-115 23-60 (337)
239 COG2256 MGS1 ATPase related to 95.4 0.092 2E-06 58.0 10.3 95 92-226 49-143 (436)
240 smart00492 HELICc3 helicase su 95.4 0.058 1.3E-06 52.0 7.9 86 394-481 23-135 (141)
241 PRK00411 cdc6 cell division co 95.4 0.078 1.7E-06 61.0 10.5 121 92-223 56-183 (394)
242 PF00448 SRP54: SRP54-type pro 95.4 0.074 1.6E-06 54.5 9.1 121 93-226 3-128 (196)
243 TIGR01075 uvrD DNA helicase II 95.3 0.068 1.5E-06 66.4 10.4 104 76-192 4-113 (715)
244 PRK13709 conjugal transfer nic 95.3 0.14 3E-06 68.0 13.4 129 69-222 960-1099(1747)
245 PF05127 Helicase_RecD: Helica 95.3 0.011 2.4E-07 58.9 2.7 118 95-227 1-127 (177)
246 PRK00149 dnaA chromosomal repl 95.3 0.088 1.9E-06 61.6 10.7 76 92-197 149-226 (450)
247 PRK11773 uvrD DNA-dependent he 95.3 0.078 1.7E-06 65.9 10.7 104 76-192 9-118 (721)
248 PRK12422 chromosomal replicati 95.2 0.094 2E-06 60.8 10.5 103 92-224 142-246 (445)
249 TIGR00362 DnaA chromosomal rep 95.2 0.11 2.3E-06 60.1 10.7 76 92-197 137-214 (405)
250 PF00308 Bac_DnaA: Bacterial d 95.1 0.17 3.7E-06 52.9 11.0 100 93-226 36-143 (219)
251 PRK12726 flagellar biosynthesi 95.1 0.43 9.3E-06 53.3 14.3 127 90-234 205-337 (407)
252 PHA03368 DNA packaging termina 95.0 0.37 8E-06 57.1 14.3 135 92-238 255-404 (738)
253 COG1419 FlhF Flagellar GTP-bin 95.0 1.4 3E-05 49.5 17.9 139 91-259 203-346 (407)
254 PRK04195 replication factor C 95.0 0.12 2.6E-06 61.0 10.5 20 91-110 39-58 (482)
255 TIGR01074 rep ATP-dependent DN 95.0 0.1 2.3E-06 64.4 10.4 85 77-173 2-90 (664)
256 PRK05973 replicative DNA helic 94.9 0.15 3.2E-06 53.7 9.8 55 87-142 60-114 (237)
257 COG1474 CDC6 Cdc6-related prot 94.9 0.15 3.2E-06 57.6 10.4 119 77-209 21-149 (366)
258 KOG0298 DEAD box-containing he 94.9 0.11 2.4E-06 64.5 9.9 131 89-223 372-550 (1394)
259 PRK12727 flagellar biosynthesi 94.9 0.33 7.2E-06 56.5 13.2 129 89-236 348-481 (559)
260 PTZ00112 origin recognition co 94.8 0.2 4.3E-06 61.0 11.5 93 94-197 784-884 (1164)
261 PF05496 RuvB_N: Holliday junc 94.8 0.11 2.4E-06 53.4 8.3 19 92-110 51-69 (233)
262 PRK08939 primosomal protein Dn 94.8 0.21 4.5E-06 55.0 11.0 102 90-222 155-260 (306)
263 PTZ00293 thymidine kinase; Pro 94.8 0.13 2.8E-06 52.8 8.7 87 91-195 4-90 (211)
264 PF06745 KaiC: KaiC; InterPro 94.8 0.081 1.8E-06 55.7 7.6 52 90-142 18-70 (226)
265 PHA00729 NTP-binding motif con 94.8 0.15 3.3E-06 52.9 9.3 116 92-235 18-138 (226)
266 PF03354 Terminase_1: Phage Te 94.7 0.086 1.9E-06 62.1 8.4 66 79-144 1-79 (477)
267 TIGR02760 TraI_TIGR conjugativ 94.7 0.2 4.3E-06 68.3 12.6 122 74-220 1017-1147(1960)
268 PRK06731 flhF flagellar biosyn 94.7 0.67 1.4E-05 49.9 14.3 128 90-236 74-208 (270)
269 PRK05707 DNA polymerase III su 94.7 0.29 6.4E-06 54.4 12.0 36 77-112 4-43 (328)
270 TIGR02688 conserved hypothetic 94.6 0.051 1.1E-06 61.1 5.8 57 63-119 173-238 (449)
271 PF13871 Helicase_C_4: Helicas 94.6 0.044 9.4E-07 58.6 5.0 77 409-485 52-128 (278)
272 PRK12724 flagellar biosynthesi 94.6 0.55 1.2E-05 53.3 13.9 122 92-234 224-354 (432)
273 PRK14087 dnaA chromosomal repl 94.6 0.17 3.6E-06 59.0 10.2 102 92-224 142-250 (450)
274 smart00491 HELICc2 helicase su 94.5 0.092 2E-06 50.7 6.7 84 397-482 23-137 (142)
275 PRK08533 flagellar accessory p 94.5 0.12 2.6E-06 54.5 8.1 52 89-141 22-73 (230)
276 PRK14088 dnaA chromosomal repl 94.4 0.32 6.9E-06 56.6 12.1 102 92-223 131-237 (440)
277 TIGR01073 pcrA ATP-dependent D 94.4 0.15 3.3E-06 63.5 10.1 85 76-173 4-92 (726)
278 TIGR02928 orc1/cdc6 family rep 94.4 0.32 6.9E-06 55.3 12.0 22 92-113 41-62 (365)
279 cd00561 CobA_CobO_BtuR ATP:cor 94.3 0.16 3.5E-06 49.8 7.9 127 93-224 4-139 (159)
280 PRK08769 DNA polymerase III su 94.2 0.39 8.4E-06 53.0 11.6 130 77-221 5-151 (319)
281 TIGR03499 FlhF flagellar biosy 94.2 0.24 5.2E-06 54.0 10.0 84 91-191 194-281 (282)
282 PF13173 AAA_14: AAA domain 94.2 0.39 8.4E-06 45.5 10.2 35 90-125 1-35 (128)
283 TIGR02881 spore_V_K stage V sp 94.1 0.26 5.6E-06 53.2 9.9 21 92-112 43-63 (261)
284 TIGR00064 ftsY signal recognit 94.1 0.47 1E-05 51.3 11.8 119 92-224 73-203 (272)
285 PLN03025 replication factor C 94.1 0.19 4.1E-06 56.0 8.9 21 92-112 35-55 (319)
286 cd00984 DnaB_C DnaB helicase C 94.1 0.2 4.4E-06 53.2 8.9 39 89-127 11-50 (242)
287 COG1702 PhoH Phosphate starvat 93.9 0.051 1.1E-06 58.9 3.8 67 77-154 129-197 (348)
288 COG4626 Phage terminase-like p 93.9 0.37 8E-06 55.8 10.8 148 71-222 56-224 (546)
289 PRK10416 signal recognition pa 93.9 2.2 4.8E-05 47.2 16.6 123 91-224 114-245 (318)
290 PRK14723 flhF flagellar biosyn 93.8 0.62 1.3E-05 56.9 13.1 126 91-236 185-317 (767)
291 PF01695 IstB_IS21: IstB-like 93.8 0.094 2E-06 52.9 5.3 47 88-135 44-90 (178)
292 KOG1133 Helicase of the DEAD s 93.8 0.092 2E-06 61.3 5.7 45 73-117 12-60 (821)
293 PRK11823 DNA repair protein Ra 93.7 0.32 6.9E-06 56.6 10.2 89 90-196 79-170 (446)
294 TIGR02880 cbbX_cfxQ probable R 93.7 0.23 5.1E-06 54.1 8.5 20 91-110 58-77 (284)
295 PHA02544 44 clamp loader, smal 93.7 0.23 5E-06 55.2 8.8 40 181-220 99-138 (316)
296 PRK06067 flagellar accessory p 93.7 0.12 2.7E-06 54.6 6.2 52 90-142 24-75 (234)
297 PRK07003 DNA polymerase III su 93.7 0.13 2.7E-06 62.1 6.7 36 181-220 118-156 (830)
298 PRK14963 DNA polymerase III su 93.6 0.67 1.5E-05 54.7 12.8 23 93-116 38-60 (504)
299 PRK12323 DNA polymerase III su 93.6 0.35 7.7E-06 57.6 10.3 38 180-221 122-162 (700)
300 COG0593 DnaA ATPase involved i 93.6 0.24 5.2E-06 55.9 8.6 105 91-226 113-221 (408)
301 PHA00350 putative assembly pro 93.6 0.51 1.1E-05 53.4 11.1 37 94-132 4-41 (399)
302 TIGR01547 phage_term_2 phage t 93.6 0.17 3.6E-06 58.3 7.6 122 93-226 3-143 (396)
303 PRK14956 DNA polymerase III su 93.6 0.22 4.8E-06 57.5 8.4 20 93-112 42-61 (484)
304 PRK05986 cob(I)alamin adenolsy 93.6 0.3 6.4E-06 49.3 8.3 131 89-224 20-159 (191)
305 PRK13894 conjugal transfer ATP 93.6 0.16 3.6E-06 56.1 7.1 55 77-132 133-191 (319)
306 PF13177 DNA_pol3_delta2: DNA 93.5 0.31 6.8E-06 48.3 8.5 118 92-224 20-143 (162)
307 COG1435 Tdk Thymidine kinase [ 93.5 0.66 1.4E-05 46.5 10.5 92 92-196 5-96 (201)
308 PRK06964 DNA polymerase III su 93.5 0.68 1.5E-05 51.6 11.9 35 78-112 3-42 (342)
309 TIGR03877 thermo_KaiC_1 KaiC d 93.5 0.16 3.4E-06 53.9 6.7 52 90-142 20-71 (237)
310 PRK13833 conjugal transfer pro 93.5 0.18 3.9E-06 55.6 7.2 55 77-132 129-187 (323)
311 PRK00771 signal recognition pa 93.4 0.72 1.6E-05 53.2 12.3 118 92-224 96-218 (437)
312 PRK07994 DNA polymerase III su 93.4 0.4 8.8E-06 57.7 10.5 36 180-219 117-155 (647)
313 CHL00181 cbbX CbbX; Provisiona 93.4 0.49 1.1E-05 51.7 10.4 24 91-114 59-82 (287)
314 cd01122 GP4d_helicase GP4d_hel 93.4 0.26 5.6E-06 53.5 8.3 53 88-141 27-80 (271)
315 PRK08691 DNA polymerase III su 93.4 0.33 7.2E-06 58.4 9.6 40 180-220 117-156 (709)
316 PRK09112 DNA polymerase III su 93.4 0.38 8.2E-06 54.0 9.7 28 88-115 39-69 (351)
317 PRK14958 DNA polymerase III su 93.3 0.15 3.2E-06 60.3 6.7 39 181-220 118-156 (509)
318 PRK14086 dnaA chromosomal repl 93.3 0.5 1.1E-05 56.3 10.9 101 93-224 316-421 (617)
319 KOG1513 Nuclear helicase MOP-3 93.2 0.14 3.1E-06 60.3 6.0 146 76-222 264-453 (1300)
320 PF05707 Zot: Zonular occluden 93.1 0.058 1.3E-06 55.2 2.5 37 94-132 3-40 (193)
321 PRK06871 DNA polymerase III su 93.0 0.97 2.1E-05 50.0 11.9 130 78-222 4-146 (325)
322 KOG1001 Helicase-like transcri 92.9 0.61 1.3E-05 56.5 11.1 150 79-236 135-307 (674)
323 PF00004 AAA: ATPase family as 92.8 0.59 1.3E-05 44.0 9.0 32 94-128 1-32 (132)
324 TIGR02785 addA_Gpos recombinat 92.8 0.27 6E-06 64.6 8.7 115 77-193 2-126 (1232)
325 cd01121 Sms Sms (bacterial rad 92.7 0.31 6.8E-06 55.1 7.9 89 89-195 80-171 (372)
326 PHA02244 ATPase-like protein 92.7 1.2 2.6E-05 49.7 12.1 27 85-111 113-139 (383)
327 PRK14960 DNA polymerase III su 92.7 0.46 9.9E-06 56.8 9.4 39 181-220 117-155 (702)
328 TIGR00767 rho transcription te 92.7 0.12 2.5E-06 58.2 4.2 30 88-118 165-194 (415)
329 PRK14961 DNA polymerase III su 92.6 0.5 1.1E-05 53.6 9.3 37 180-220 117-156 (363)
330 PRK06620 hypothetical protein; 92.5 0.28 6E-06 51.1 6.6 18 92-109 45-62 (214)
331 cd01393 recA_like RecA is a b 92.4 0.47 1E-05 49.8 8.3 99 90-195 18-127 (226)
332 PRK08506 replicative DNA helic 92.4 0.5 1.1E-05 55.4 9.3 107 89-196 190-316 (472)
333 PRK00440 rfc replication facto 92.3 0.96 2.1E-05 50.2 11.2 19 93-111 40-58 (319)
334 TIGR02782 TrbB_P P-type conjug 92.3 0.35 7.6E-06 53.1 7.5 93 77-192 117-214 (299)
335 PRK14969 DNA polymerase III su 92.3 0.85 1.8E-05 54.3 11.2 38 179-220 116-156 (527)
336 PRK06090 DNA polymerase III su 92.3 1.7 3.6E-05 48.1 12.6 131 77-222 4-147 (319)
337 PRK14949 DNA polymerase III su 92.3 0.21 4.5E-06 61.5 6.0 35 181-219 118-155 (944)
338 TIGR03600 phage_DnaB phage rep 92.3 0.51 1.1E-05 54.7 9.2 108 88-196 191-319 (421)
339 cd01130 VirB11-like_ATPase Typ 92.2 0.3 6.5E-06 49.7 6.4 51 77-128 10-61 (186)
340 COG2909 MalT ATP-dependent tra 92.2 0.74 1.6E-05 55.7 10.3 132 90-224 36-171 (894)
341 PRK14964 DNA polymerase III su 92.2 1.1 2.3E-05 52.5 11.5 109 92-220 36-153 (491)
342 COG2804 PulE Type II secretory 92.2 0.28 6E-06 56.3 6.5 47 77-124 242-290 (500)
343 PRK09376 rho transcription ter 92.1 0.19 4.1E-06 56.3 5.0 28 89-117 167-194 (416)
344 PF03969 AFG1_ATPase: AFG1-lik 92.1 1.5 3.2E-05 49.4 12.2 124 91-244 62-196 (362)
345 PF03796 DnaB_C: DnaB-like hel 92.1 0.82 1.8E-05 49.2 10.0 133 89-222 17-179 (259)
346 PRK13341 recombination factor 92.0 0.57 1.2E-05 57.6 9.5 40 182-226 109-148 (725)
347 PRK07764 DNA polymerase III su 92.0 0.49 1.1E-05 58.9 9.0 40 180-220 118-157 (824)
348 PRK14952 DNA polymerase III su 92.0 0.88 1.9E-05 54.4 10.7 37 180-220 116-155 (584)
349 PRK14951 DNA polymerase III su 91.9 0.92 2E-05 54.6 10.8 37 180-220 122-161 (618)
350 TIGR01425 SRP54_euk signal rec 91.9 2.7 5.9E-05 48.2 14.1 118 93-224 102-225 (429)
351 PF01443 Viral_helicase1: Vira 91.9 0.2 4.4E-06 52.8 4.9 21 422-442 184-204 (234)
352 PRK14962 DNA polymerase III su 91.8 0.69 1.5E-05 54.1 9.5 19 93-111 38-56 (472)
353 COG0467 RAD55 RecA-superfamily 91.8 0.87 1.9E-05 49.0 9.8 52 89-141 21-72 (260)
354 PRK13342 recombination factor 91.8 0.8 1.7E-05 52.9 10.0 19 92-110 37-55 (413)
355 PRK06645 DNA polymerase III su 91.7 1.2 2.5E-05 52.6 11.2 20 92-111 44-63 (507)
356 TIGR01650 PD_CobS cobaltochela 91.6 2 4.4E-05 47.3 12.1 37 75-111 47-84 (327)
357 PRK04328 hypothetical protein; 91.6 0.39 8.5E-06 51.3 6.6 52 90-142 22-73 (249)
358 PF05729 NACHT: NACHT domain 91.4 0.91 2E-05 44.6 8.8 42 93-134 2-48 (166)
359 COG0470 HolB ATPase involved i 91.4 0.72 1.6E-05 51.3 8.9 120 90-220 22-146 (325)
360 PRK13851 type IV secretion sys 91.3 0.31 6.8E-06 54.4 5.7 44 88-132 159-202 (344)
361 COG1202 Superfamily II helicas 91.3 4.4 9.4E-05 47.0 14.4 176 762-943 618-826 (830)
362 COG4962 CpaF Flp pilus assembl 91.3 0.35 7.6E-06 52.7 5.8 64 70-134 150-215 (355)
363 PF05621 TniB: Bacterial TniB 91.3 0.7 1.5E-05 49.9 8.0 91 92-196 62-159 (302)
364 PRK05896 DNA polymerase III su 91.2 0.73 1.6E-05 54.9 8.8 21 92-112 39-59 (605)
365 PRK09361 radB DNA repair and r 91.1 0.44 9.5E-06 50.1 6.4 39 90-128 22-60 (225)
366 PRK07940 DNA polymerase III su 91.1 1.1 2.5E-05 51.0 10.1 20 92-111 37-56 (394)
367 PRK04841 transcriptional regul 91.1 1.1 2.5E-05 57.5 11.5 41 875-915 839-879 (903)
368 PRK10436 hypothetical protein; 91.1 0.43 9.4E-06 55.5 6.7 48 77-125 202-251 (462)
369 PRK09111 DNA polymerase III su 91.0 1.4 2.9E-05 53.2 11.0 38 179-220 129-169 (598)
370 PF05876 Terminase_GpA: Phage 90.9 1.1 2.3E-05 53.7 10.1 114 73-195 13-147 (557)
371 PRK07471 DNA polymerase III su 90.8 1.5 3.2E-05 49.6 10.6 123 92-223 42-181 (365)
372 PHA03372 DNA packaging termina 90.8 2.8 6E-05 49.3 12.7 136 92-238 203-351 (668)
373 PRK09087 hypothetical protein; 90.7 0.94 2E-05 47.6 8.3 18 92-109 45-62 (226)
374 PRK11331 5-methylcytosine-spec 90.5 0.57 1.2E-05 53.6 6.9 41 75-116 178-218 (459)
375 PRK10867 signal recognition pa 90.5 2.4 5.3E-05 48.8 12.1 118 93-224 102-226 (433)
376 PHA00012 I assembly protein 90.5 2.4 5.2E-05 46.2 11.0 31 94-124 4-34 (361)
377 COG3973 Superfamily I DNA and 90.4 0.83 1.8E-05 53.0 8.0 64 80-143 213-284 (747)
378 TIGR03878 thermo_KaiC_2 KaiC d 90.4 0.38 8.2E-06 51.8 5.2 38 90-127 35-72 (259)
379 KOG2028 ATPase related to the 90.4 0.51 1.1E-05 51.3 5.9 101 88-226 157-261 (554)
380 TIGR00635 ruvB Holliday juncti 90.3 0.75 1.6E-05 50.8 7.7 18 92-109 31-48 (305)
381 TIGR03881 KaiC_arch_4 KaiC dom 90.3 0.6 1.3E-05 49.2 6.5 50 89-139 18-67 (229)
382 PRK07399 DNA polymerase III su 90.3 2.1 4.7E-05 47.3 11.0 50 168-222 111-162 (314)
383 COG2255 RuvB Holliday junction 90.2 0.89 1.9E-05 48.2 7.4 72 92-208 53-124 (332)
384 TIGR00708 cobA cob(I)alamin ad 90.2 0.82 1.8E-05 45.5 6.8 127 93-224 7-141 (173)
385 PRK06995 flhF flagellar biosyn 90.0 6.2 0.00013 46.1 14.8 124 91-235 256-387 (484)
386 PRK14957 DNA polymerase III su 90.0 1.3 2.9E-05 52.5 9.6 37 180-220 117-156 (546)
387 TIGR03880 KaiC_arch_3 KaiC dom 89.9 0.78 1.7E-05 48.1 7.0 52 90-142 15-66 (224)
388 PF12846 AAA_10: AAA-like doma 89.9 0.49 1.1E-05 51.8 5.7 43 91-133 1-43 (304)
389 cd01129 PulE-GspE PulE/GspE Th 89.9 0.65 1.4E-05 50.0 6.4 53 77-130 64-119 (264)
390 PRK07993 DNA polymerase III su 89.7 2 4.3E-05 48.0 10.3 127 77-221 3-146 (334)
391 PRK14948 DNA polymerase III su 89.7 1.4 3E-05 53.4 9.7 22 92-113 39-60 (620)
392 PF02534 T4SS-DNA_transf: Type 89.6 0.37 8.1E-06 56.8 4.7 55 92-148 45-99 (469)
393 COG3267 ExeA Type II secretory 89.6 1.2 2.7E-05 46.5 7.8 47 88-135 47-94 (269)
394 PRK14959 DNA polymerase III su 89.5 0.99 2.1E-05 54.0 8.1 22 92-113 39-60 (624)
395 PRK08699 DNA polymerase III su 89.5 1.9 4.1E-05 47.9 9.9 36 78-113 3-43 (325)
396 PRK05748 replicative DNA helic 89.5 1.3 2.8E-05 51.8 9.1 106 89-195 201-327 (448)
397 PRK13900 type IV secretion sys 89.4 0.47 1E-05 52.8 5.1 45 88-133 157-201 (332)
398 PRK06904 replicative DNA helic 89.4 1.6 3.4E-05 51.2 9.6 132 88-220 218-381 (472)
399 TIGR02237 recomb_radB DNA repa 89.4 0.8 1.7E-05 47.4 6.6 49 90-139 11-59 (209)
400 COG2109 BtuR ATP:corrinoid ade 89.3 2.9 6.4E-05 41.7 9.8 137 94-234 31-177 (198)
401 TIGR02538 type_IV_pilB type IV 89.3 0.7 1.5E-05 55.6 6.7 47 77-124 300-348 (564)
402 TIGR02012 tigrfam_recA protein 89.2 0.66 1.4E-05 51.1 5.9 46 89-134 53-98 (321)
403 PRK14955 DNA polymerase III su 89.2 1.9 4.1E-05 49.6 9.9 20 92-111 39-58 (397)
404 TIGR00678 holB DNA polymerase 89.1 1.7 3.7E-05 44.1 8.6 24 92-115 15-38 (188)
405 PF00437 T2SE: Type II/IV secr 89.0 0.64 1.4E-05 50.4 5.7 52 79-131 114-167 (270)
406 PRK07414 cob(I)yrinic acid a,c 89.0 3.1 6.6E-05 41.6 9.8 129 93-224 23-159 (178)
407 KOG1016 Predicted DNA helicase 88.9 2.3 5.1E-05 50.4 10.1 130 90-225 281-475 (1387)
408 cd00983 recA RecA is a bacter 88.8 0.76 1.6E-05 50.7 6.1 46 90-135 54-99 (325)
409 COG1219 ClpX ATP-dependent pro 88.7 0.27 5.8E-06 52.6 2.3 22 89-110 95-116 (408)
410 PRK07133 DNA polymerase III su 88.7 2.2 4.9E-05 51.9 10.4 45 759-808 603-648 (725)
411 PRK00080 ruvB Holliday junctio 88.7 1.1 2.4E-05 50.0 7.6 19 92-110 52-70 (328)
412 TIGR02639 ClpA ATP-dependent C 88.6 1.6 3.5E-05 54.3 9.6 25 91-115 203-227 (731)
413 PRK05563 DNA polymerase III su 88.5 2.5 5.4E-05 50.7 10.7 21 92-112 39-59 (559)
414 TIGR02974 phageshock_pspF psp 88.4 2.6 5.7E-05 47.0 10.2 96 80-196 11-107 (329)
415 TIGR02655 circ_KaiC circadian 88.4 0.81 1.8E-05 54.0 6.4 60 82-142 249-313 (484)
416 PRK08451 DNA polymerase III su 88.3 1.8 3.9E-05 51.1 9.1 112 93-220 38-154 (535)
417 PHA02542 41 41 helicase; Provi 88.3 2.2 4.8E-05 49.9 9.8 37 90-126 189-225 (473)
418 cd01126 TraG_VirD4 The TraG/Tr 88.2 0.33 7.1E-06 55.6 2.9 55 93-149 1-55 (384)
419 cd01394 radB RadB. The archaea 88.2 0.63 1.4E-05 48.5 4.9 37 90-126 18-54 (218)
420 COG0468 RecA RecA/RadA recombi 88.2 1.9 4.2E-05 46.5 8.4 88 91-194 60-153 (279)
421 TIGR03743 SXT_TraD conjugative 88.2 1.5 3.3E-05 53.2 8.6 56 90-145 175-232 (634)
422 PRK09354 recA recombinase A; P 88.0 0.89 1.9E-05 50.6 5.9 45 90-134 59-103 (349)
423 TIGR02640 gas_vesic_GvpN gas v 87.9 1.2 2.7E-05 47.9 7.0 46 77-125 3-52 (262)
424 PRK07004 replicative DNA helic 87.9 1.5 3.3E-05 51.2 8.2 108 88-196 210-338 (460)
425 COG1221 PspF Transcriptional r 87.8 1.6 3.4E-05 49.4 7.7 89 89-197 99-188 (403)
426 TIGR00416 sms DNA repair prote 87.7 2.3 5E-05 49.6 9.4 89 89-195 92-183 (454)
427 PRK14950 DNA polymerase III su 87.7 2.4 5.1E-05 51.4 9.9 21 92-112 39-59 (585)
428 PF00154 RecA: recA bacterial 87.6 0.99 2.1E-05 49.6 6.0 49 91-139 53-101 (322)
429 TIGR00959 ffh signal recogniti 87.6 4.6 0.0001 46.5 11.6 118 93-224 101-225 (428)
430 TIGR03689 pup_AAA proteasome A 87.6 0.9 1.9E-05 53.3 6.0 19 91-109 216-234 (512)
431 PRK11034 clpA ATP-dependent Cl 87.5 3.1 6.7E-05 51.6 10.8 32 82-113 196-229 (758)
432 PRK08840 replicative DNA helic 87.5 2.5 5.4E-05 49.4 9.6 107 88-195 214-342 (464)
433 PF08423 Rad51: Rad51; InterP 87.4 1.3 2.9E-05 47.4 6.7 104 84-194 26-145 (256)
434 KOG2228 Origin recognition com 87.3 2.8 6.1E-05 45.6 8.8 122 90-224 48-182 (408)
435 TIGR00602 rad24 checkpoint pro 87.3 1.9 4E-05 52.2 8.5 19 92-110 111-129 (637)
436 PF01637 Arch_ATPase: Archaeal 87.2 0.35 7.6E-06 50.6 2.2 97 91-195 20-131 (234)
437 PRK05595 replicative DNA helic 87.2 1.8 4E-05 50.5 8.3 106 89-196 199-325 (444)
438 PF04408 HA2: Helicase associa 87.2 0.58 1.2E-05 42.4 3.3 56 767-823 3-59 (102)
439 cd01128 rho_factor Transcripti 87.1 0.49 1.1E-05 50.4 3.2 28 88-116 13-40 (249)
440 PRK14721 flhF flagellar biosyn 87.1 8 0.00017 44.4 13.1 126 90-236 190-323 (420)
441 COG1197 Mfd Transcription-repa 87.1 1.7 3.8E-05 54.6 8.2 110 80-195 731-886 (1139)
442 COG2805 PilT Tfp pilus assembl 87.0 0.92 2E-05 48.5 5.0 43 92-135 126-178 (353)
443 TIGR02397 dnaX_nterm DNA polym 87.0 2.6 5.5E-05 47.6 9.2 20 92-111 37-56 (355)
444 PRK12608 transcription termina 87.0 1.1 2.5E-05 50.0 6.0 39 77-116 116-157 (380)
445 PRK09165 replicative DNA helic 86.9 2.4 5.1E-05 50.2 9.1 106 89-196 215-355 (497)
446 PRK08760 replicative DNA helic 86.9 2.5 5.5E-05 49.6 9.2 131 88-220 226-386 (476)
447 PRK03992 proteasome-activating 86.9 1.7 3.7E-05 49.7 7.7 20 91-110 165-184 (389)
448 CHL00176 ftsH cell division pr 86.9 2 4.3E-05 52.2 8.5 20 92-111 217-236 (638)
449 PF13481 AAA_25: AAA domain; P 86.7 1.8 3.8E-05 44.1 7.0 54 90-144 31-94 (193)
450 PRK14965 DNA polymerase III su 86.6 1 2.2E-05 54.3 5.9 41 179-220 116-156 (576)
451 TIGR00763 lon ATP-dependent pr 86.5 2.9 6.3E-05 52.4 10.1 26 90-116 346-371 (775)
452 cd01123 Rad51_DMC1_radA Rad51_ 86.4 2 4.3E-05 45.3 7.5 40 90-129 18-63 (235)
453 PRK14954 DNA polymerase III su 86.3 3.3 7.2E-05 50.0 9.9 38 179-220 124-164 (620)
454 TIGR02533 type_II_gspE general 86.2 1.1 2.4E-05 52.7 5.7 48 77-125 226-276 (486)
455 PF14617 CMS1: U3-containing 9 86.0 0.87 1.9E-05 48.2 4.3 74 119-192 126-211 (252)
456 COG1485 Predicted ATPase [Gene 85.9 4.5 9.7E-05 44.5 9.6 127 72-225 21-173 (367)
457 PRK08006 replicative DNA helic 85.9 3.7 8E-05 48.1 9.9 132 88-220 221-383 (471)
458 TIGR02238 recomb_DMC1 meiotic 85.5 1.1 2.5E-05 49.4 5.2 97 90-194 95-203 (313)
459 TIGR00665 DnaB replicative DNA 85.5 3.1 6.8E-05 48.5 9.1 106 89-196 193-319 (434)
460 TIGR03346 chaperone_ClpB ATP-d 85.5 2.5 5.4E-05 53.6 8.8 21 91-111 194-214 (852)
461 COG0210 UvrD Superfamily I DNA 85.5 3 6.5E-05 51.5 9.4 86 76-173 2-91 (655)
462 TIGR02788 VirB11 P-type DNA tr 85.4 0.88 1.9E-05 50.3 4.2 43 88-131 141-183 (308)
463 TIGR00595 priA primosomal prot 85.4 9.6 0.00021 45.2 13.1 75 329-442 25-99 (505)
464 PF00265 TK: Thymidine kinase; 85.4 1.9 4.2E-05 43.3 6.2 36 94-129 4-39 (176)
465 TIGR02655 circ_KaiC circadian 85.1 1.1 2.3E-05 53.0 5.0 52 90-142 20-72 (484)
466 TIGR03754 conj_TOL_TraD conjug 84.8 2.1 4.7E-05 51.4 7.3 54 90-143 179-234 (643)
467 PLN03187 meiotic recombination 84.8 1.9 4E-05 48.2 6.4 96 91-194 126-233 (344)
468 COG0630 VirB11 Type IV secreto 84.6 4.6 0.0001 44.6 9.4 58 73-132 125-183 (312)
469 TIGR01817 nifA Nif-specific re 84.6 5.7 0.00012 47.7 11.0 88 88-196 216-304 (534)
470 PRK10865 protein disaggregatio 84.6 3 6.5E-05 52.8 8.9 23 91-113 199-221 (857)
471 cd01127 TrwB Bacterial conjuga 84.5 0.94 2E-05 52.3 4.1 45 89-133 40-84 (410)
472 COG1222 RPT1 ATP-dependent 26S 84.5 0.53 1.1E-05 51.4 1.8 20 89-108 183-202 (406)
473 TIGR03819 heli_sec_ATPase heli 84.4 1.7 3.8E-05 48.5 6.0 55 77-132 163-218 (340)
474 PRK10917 ATP-dependent DNA hel 84.4 3.9 8.4E-05 50.6 9.5 80 328-442 309-389 (681)
475 PRK13695 putative NTPase; Prov 84.3 20 0.00043 35.7 13.2 30 93-122 2-31 (174)
476 cd00544 CobU Adenosylcobinamid 84.3 1.8 4E-05 43.1 5.5 45 94-141 2-46 (169)
477 COG1110 Reverse gyrase [DNA re 84.2 2.3 5E-05 52.5 7.1 82 315-429 111-192 (1187)
478 PRK05636 replicative DNA helic 83.9 3.3 7.1E-05 49.0 8.2 38 89-126 263-301 (505)
479 COG1132 MdlB ABC-type multidru 83.8 2.5 5.4E-05 51.2 7.6 46 88-134 352-399 (567)
480 PRK14873 primosome assembly pr 83.7 14 0.0003 45.3 13.6 138 317-500 177-317 (665)
481 cd01131 PilT Pilus retraction 83.7 1.5 3.2E-05 45.1 4.7 38 93-131 3-42 (198)
482 KOG2004 Mitochondrial ATP-depe 83.6 2.7 5.9E-05 50.0 7.1 111 74-210 413-533 (906)
483 PRK13897 type IV secretion sys 83.4 1.2 2.6E-05 53.5 4.5 57 91-149 158-214 (606)
484 PRK06647 DNA polymerase III su 83.3 8.7 0.00019 46.1 11.6 20 92-111 39-58 (563)
485 PF03237 Terminase_6: Terminas 83.2 9.3 0.0002 43.0 11.7 97 95-197 1-112 (384)
486 KOG0991 Replication factor C, 83.0 1.5 3.2E-05 45.0 4.2 20 92-111 49-68 (333)
487 cd03115 SRP The signal recogni 82.9 2.9 6.3E-05 41.7 6.5 33 94-126 3-35 (173)
488 PRK13764 ATPase; Provisional 82.9 1.7 3.7E-05 52.0 5.3 42 89-131 255-297 (602)
489 PRK14953 DNA polymerase III su 82.6 8.7 0.00019 45.2 11.1 19 94-112 41-59 (486)
490 KOG1806 DEAD box containing he 82.5 2.6 5.7E-05 51.7 6.6 69 76-144 738-808 (1320)
491 KOG0742 AAA+-type ATPase [Post 82.3 1.6 3.5E-05 48.3 4.5 17 92-108 385-401 (630)
492 PF10412 TrwB_AAD_bind: Type I 82.3 2.1 4.6E-05 48.9 5.8 46 89-134 13-58 (386)
493 COG0378 HypB Ni2+-binding GTPa 82.2 17 0.00038 36.7 11.2 51 183-233 144-196 (202)
494 KOG0058 Peptide exporter, ABC 81.9 3.4 7.4E-05 49.5 7.3 48 88-137 491-541 (716)
495 PLN00020 ribulose bisphosphate 81.6 1.5 3.2E-05 48.8 3.9 74 92-196 149-226 (413)
496 PRK08058 DNA polymerase III su 81.3 4.1 8.9E-05 45.5 7.5 39 179-221 107-148 (329)
497 PF06068 TIP49: TIP49 C-termin 81.0 2.5 5.4E-05 46.9 5.4 36 90-126 49-84 (398)
498 PF06733 DEAD_2: DEAD_2; Inte 80.9 0.66 1.4E-05 46.6 0.9 42 156-197 117-160 (174)
499 COG0552 FtsY Signal recognitio 80.9 22 0.00048 39.0 12.4 128 93-233 141-280 (340)
500 PF13555 AAA_29: P-loop contai 80.7 1.4 3.1E-05 35.6 2.6 19 90-108 22-40 (62)
No 1
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4e-212 Score=1727.85 Aligned_cols=909 Identities=61% Similarity=0.990 Sum_probs=872.8
Q ss_pred CCccceeeecCCC--CCCCchhhhcccCCCCCCchhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHH
Q 002183 35 TRSCVHEVAVPSG--YALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 35 ~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i 112 (955)
..+|.|++++|++ |.|+.+ ......+++.|||+|+|||..||.++.++++|+|+|||++|||++|+|||
T Consensus 95 ~~~c~HeVavP~~~dY~p~~~---------~~~~~~pAk~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAI 165 (1041)
T KOG0948|consen 95 REGCRHEVAVPPNYDYTPLLP---------KIFGKPPAKTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAI 165 (1041)
T ss_pred cccceeeeecCCccccCcccc---------ccCCCCcccCCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHH
Confidence 4689999999988 777544 34556788999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccc
Q 002183 113 AMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192 (955)
Q Consensus 113 ~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH 192 (955)
+++++.++||||++|+|||+||+|++|...|++||++|||+++||++.|+|||+|+|++|||+|+..++++.||||||+|
T Consensus 166 A~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIH 245 (1041)
T KOG0948|consen 166 AMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIH 245 (1041)
T ss_pred HHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeeccc
Q 002183 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEK 272 (955)
Q Consensus 193 ~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~ 272 (955)
||.|.+||++||+.|+++|+++++++||||+||+.+|++|+..++.+||+++++++||+||+||+||.++.++|+++|++
T Consensus 246 YMRDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek 325 (1041)
T KOG0948|consen 246 YMRDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEK 325 (1041)
T ss_pred hccccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhchhhHHHHHHHHHHhhccCCccCC-CCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhcc
Q 002183 273 EQFREDNFVKLQDTFLKQKIGGRRENG-KASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK 351 (955)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~ 351 (955)
++|..++|.+.+..+.+.....+.... ++.++...+|.......+..+++.+..++..|+|||+||+++|+.+|..+.+
T Consensus 326 ~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~k 405 (1041)
T KOG0948|consen 326 GKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSK 405 (1041)
T ss_pred cccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhcc
Confidence 999999999999999876665532211 1112222233456677899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEccccccc
Q 002183 352 LDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMG 431 (955)
Q Consensus 352 ~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~G 431 (955)
+++++++|+..+..+|++++..|+++|+.+||++++.++|.||||+|||||.|..++.|+.+|++|.++|||||+||++|
T Consensus 406 ldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiG 485 (1041)
T KOG0948|consen 406 LDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIG 485 (1041)
T ss_pred CcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCcccccccCcHH
Q 002183 432 LNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYY 511 (955)
Q Consensus 432 idip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~f~~~~~ 511 (955)
+|||+.+|||+...+|||..+||++.+||+||+|||||+|.|.+|+||++.++.+++...+.+++|.+++|+|+|++|||
T Consensus 486 LNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYn 565 (1041)
T KOG0948|consen 486 LNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYN 565 (1041)
T ss_pred cCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccchhhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHhccccCChhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 002183 512 SILNLMSRAEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITR 591 (955)
Q Consensus 512 ~il~ll~~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 591 (955)
|+||||++++++ |++|+++||+|||+...+|.+++++.+++++++.+.++++..+.+|++++.++.+.+++++..+.+
T Consensus 566 MiLNLlRvEei~--pe~~l~~SF~QFQ~~~~~P~i~~kl~~~~~~~~~i~i~~E~~v~~yh~l~~ql~~~~k~i~~~~~~ 643 (1041)
T KOG0948|consen 566 MILNLLRVEEIS--PEYMLERSFHQFQNYKALPDIEEKLKQLEEELDSINIPNEEEVKEYHDLELQLEKYGKDIREVITH 643 (1041)
T ss_pred HHHHHHHHccCC--HHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccCCCcEEEEccCCccceeEEEEEeecCCCCc-------------ceec-----------------C----CCC
Q 002183 592 PERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKPSAG-------------VGTL-----------------P----SRG 637 (955)
Q Consensus 592 ~~~~~~~l~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-----------------~----~~~ 637 (955)
|.++++||++||+|.++.++.+|+|||++++.+..+.. ++++ | +.+
T Consensus 644 P~~~l~fLq~GRlV~v~~g~~d~~WGvvv~f~k~~~~~~~~~~~~p~e~Y~vdvll~~~~~~~~~~~~~~~~p~~~~ek~ 723 (1041)
T KOG0948|consen 644 PKYCLPFLQPGRLVKVKVGGDDFFWGVVVNFIKRKNSSKNSDQVGPHESYIVDVLLHCSTESSPVGAKKVNVPPRPNEKG 723 (1041)
T ss_pred cchhcccccCCceEEEecCCCCCceeEEEEEEeccCCCCCccccCCCcceEEEEEeeeeccccccccCcCCCCCCCCCCC
Confidence 99999999999999999999999999999988765321 4444 1 677
Q ss_pred ceEEEeecCCccceeceeeeecCCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHH
Q 002183 638 GGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKL 717 (955)
Q Consensus 638 ~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 717 (955)
.+.++++.++.|.+||++++++|+++++.++|..+.+.+.++.++||+|+|++||++||+|.+.++.++.++++.|+.++
T Consensus 724 ~~~vvpv~l~~i~~is~~r~~iP~dl~~~d~r~~~~k~v~e~~~rfp~gip~LdPv~dM~I~~~~~~~~~~k~e~lE~~l 803 (1041)
T KOG0948|consen 724 EMEVVPVLLTLIDAISSIRLYIPKDLRSVDARLSVLKAVQEVKSRFPDGIPLLDPVKDMNIKDVEFKKLVKKIESLEARL 803 (1041)
T ss_pred ceEEEeeeHHHHhhhhHHHhcCcccccCcchHHHHHHHHHHHHHhcCCCCCCcChhhccCccchHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccCCCccchhhhhhhcccCCc
Q 002183 718 FAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGD 796 (955)
Q Consensus 718 ~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~~~~~e~~~~~~VL~~lgyid~~~~vt~KGrvA~eI~s~~ 796 (955)
..||.|+. ..++.++.+.++..|..++++++.+++..+.+.+++|+++|++|||||||++.+++|.+||||||||+|+|
T Consensus 804 ~~hp~~k~~~~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~ddvie~KGrvACEIsSgD 883 (1041)
T KOG0948|consen 804 ESHPLHKSSELEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDDVIELKGRVACEISSGD 883 (1041)
T ss_pred ccCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEcceEEEEecccc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhhccCC
Q 002183 797 ELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVR 876 (955)
Q Consensus 797 eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~l~~~~~~~~~~~~~ 876 (955)
||++|||||+|+|++|+|+|+||||||||||+++++.+.+.++|+.++.+|++.|++|++|+.+|++++++++|+++ |+
T Consensus 884 ELlLTEliFnG~Fndl~~eq~aaLLSCfVf~eks~e~~~l~~el~~~l~~lqe~ArrIAkVs~ecKlEide~~Yv~s-Fk 962 (1041)
T KOG0948|consen 884 ELLLTELIFNGIFNDLPVEQAAALLSCFVFQEKSSEAPKLKEELAGPLRQLQESARRIAKVSKECKLEIDEEDYVES-FK 962 (1041)
T ss_pred hHHHHHHHHhccccCCCHHHHHHHHhheeehhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHh-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ccHHHHHHHHhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhcCCeeeecCCCC
Q 002183 877 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL 955 (955)
Q Consensus 877 ~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ellrq~~~aa~~iG~~~L~~k~~~a~~~ikRdiVf~~SLYl 955 (955)
|.||+|||+||+|+||++||++|+++|||||||+|||+||||||.+||++|||.+|++||++|+.+||||||||+||||
T Consensus 963 p~LMdvVy~W~~GatF~eIckmTdvfEGSiIR~~RRLeElLrQl~~AAk~iGnteLe~Kf~~~~~~ikRDIVFAaSLYL 1041 (1041)
T KOG0948|consen 963 PELMDVVYAWAKGATFAEICKMTDVFEGSIIRTFRRLEELLRQLIDAAKVIGNTELENKFEEAIKKIKRDIVFAASLYL 1041 (1041)
T ss_pred hHHHHHHHHHHccccHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhceeehhhccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.7e-169 Score=1418.56 Aligned_cols=887 Identities=39% Similarity=0.643 Sum_probs=781.6
Q ss_pred CCCchhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHh
Q 002183 63 PVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 63 ~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
..++++++..|||+|++||++||.++++|.+|+|+|||+||||++|+|||+.+.+++.|++|++|+|||+||+|++|++.
T Consensus 284 ~~lVpe~a~~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 284 YQLVPEMALIYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred HHhchhHHhhCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHh
Confidence 55889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeEEecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccc
Q 002183 143 FKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSAT 222 (955)
Q Consensus 143 ~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT 222 (955)
|+++|++|||+++||++.|+|||+|+|++|||++.+.+++++||||||+||++|.+||++||++++++|+++++|+||||
T Consensus 364 F~DvgLlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSAT 443 (1248)
T KOG0947|consen 364 FGDVGLLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSAT 443 (1248)
T ss_pred ccccceeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhcc------CCc
Q 002183 223 MSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIG------GRR 296 (955)
Q Consensus 223 ~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~ 296 (955)
+||..+|++|+++++++.++|+++..||+||+||+|.. ..++.+++..+.|...++......+.+.... ...
T Consensus 444 VPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~--~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~ 521 (1248)
T KOG0947|consen 444 VPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTK--KSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDAR 521 (1248)
T ss_pred CCChHHHHHHhhhccCceEEEEecCCCccceEEEEEec--cceehhhcccchhhhhcchhhhhhhccccccccccccccc
Confidence 99999999999999999999999999999999999975 4688889999999888887776666421111 000
Q ss_pred cCCCC---CCCc--cCC-----CCCC-C--CCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHH
Q 002183 297 ENGKA---SGRM--AKG-----GSGS-G--GSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV 363 (955)
Q Consensus 297 ~~~~~---~~~~--~~~-----~~~~-~--~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i 363 (955)
.+++. .++. ..| +... + .+.+..++..+...+..|+|||||||+.|+.+|+.|...++++..|++++
T Consensus 522 ~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV 601 (1248)
T KOG0947|consen 522 GGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEV 601 (1248)
T ss_pred ccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHH
Confidence 00110 0000 011 1111 1 13588999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEec
Q 002183 364 EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443 (955)
Q Consensus 364 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~ 443 (955)
+-+++++..+|+++||++||+..+.+++.||+++||||+.|..|+.||.+|++|.++|||||+|||||||||+++|||.+
T Consensus 602 ~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~S 681 (1248)
T KOG0947|consen 602 HLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSS 681 (1248)
T ss_pred HHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc-ccHHHHHHhHhCCCCcccccccCcHHHHHHhhhcccc
Q 002183 444 VKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ-MEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEG 522 (955)
Q Consensus 444 ~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~-~~~~~~~~l~~~~~~~l~s~f~~~~~~il~ll~~~~~ 522 (955)
..|+||..+|.+.|+||+||+|||||+|.|..|++|+++.+. ++...+++++.|.+.+|.|+|++||+|||||++++.+
T Consensus 682 l~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~SQFRlTY~MILnLLRve~l 761 (1248)
T KOG0947|consen 682 LRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLESQFRLTYGMILNLLRVEAL 761 (1248)
T ss_pred hhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999777 7899999999999999999999999999999999998
Q ss_pred hhhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHhccccC----ChhhHHHHHHHHHHHHHHHHHHHHHhcCchhhhhc
Q 002183 523 QFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDAS----GEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYY 598 (955)
Q Consensus 523 ~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (955)
. +|+||++||++|...+..|+.++++.++++++..+... +..++.+|+..-..+..++..++.-..+..+.+.+
T Consensus 762 r--vEdm~krSf~E~~s~~~~~~~eq~l~~~~eel~sie~s~c~~~~~~l~kyl~a~~e~~e~~~~l~~~~~~s~~~~~~ 839 (1248)
T KOG0947|consen 762 R--VEDMMKRSFSEFVSQRLSPEHEQELKELDEELLSIEESDCAIDLKDLRKYLSAYEEITEYNEKLREEKMKSANILRI 839 (1248)
T ss_pred H--HHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Confidence 8 99999999999999999999999999999988877653 45789999999999999999988887888888999
Q ss_pred cCCCcEEEEccCCccceeEEEEEeecCCCCcceec------C--C-C-------------------------Cce--EE-
Q 002183 599 LGSGRLIKVREGGTDWGWGVVVNVVKKPSAGVGTL------P--S-R-------------------------GGG--YI- 641 (955)
Q Consensus 599 l~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~-~-------------------------~~~--~~- 641 (955)
|..||+|.+++.+.....|+++....+.+..+-++ | . + ... .+
T Consensus 840 l~~GR~vv~k~~~~~~~lg~vl~~s~~t~~~~~~~~~~~~~p~~~~~~~~~~s~a~~~~p~~l~af~~~~~~~~~~~~~~ 919 (1248)
T KOG0947|consen 840 LKEGRVVVLKNLKEENNLGVVLKVSLNTNGRVCVVLVAYLKPLDNKNGSLDPSFALNLIPDSLLAFEKFFPNVPRNVPLG 919 (1248)
T ss_pred hhcCcEEEEcChhhhcccceEEEEecCCCcceEEEEEeeccCCcCcCCCcCcccccccCcchhhccccccCCccccccee
Confidence 99999999998655667888888776654332111 1 0 0 000 00
Q ss_pred --EeecCCccc----eeceeee----ecCCCCCC-hhHH-HHHHHHHHH---HHHhCCCCCCCCCccccCCCCChHHHHH
Q 002183 642 --VPVQLPLIS----TLSKIRL----SVPPDLRP-LDAR-QSILLAVQE---LESRFPQGLPKLNPVKDMKIEDPEVVDL 706 (955)
Q Consensus 642 --~~~~~~~i~----~i~~~~~----~~~~~~~~-~~~~-~~~~~~l~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 706 (955)
.+++.+.+. .+.++.+ .++..+.. .+.. ..+.....+ +.+--..++|+.+|+++.+.++.++.+.
T Consensus 920 ~~~~~~~~~v~~~~~g~~~ie~l~~~~~~~~~~~~~D~~~aal~~~~~~~l~l~~~~~~~~~~~epv~~~k~kd~e~~~~ 999 (1248)
T KOG0947|consen 920 SLNPLYLSGVTAYVKGVPNIEILCGDALRQIIGKVADGQKAALNESTAQVLDLLEGSLETPTWKEPVNDSKLKDDEVVEM 999 (1248)
T ss_pred cccccchhccchhhcCCcchhhhhccccccccccccccHHHHHHHHHHHhhhhhhcCccCcchhhhhhhhhhccHHHHHH
Confidence 011111111 1111100 01111111 1111 112222222 2222244588999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccCCCccchh
Q 002183 707 VNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLK 785 (955)
Q Consensus 707 ~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~~~~~e~~~~~~VL~~lgyid~~~~vt~K 785 (955)
..+..++.+.+...||+.| .+++|+...++..+++.++++|+.++++ +++.+.|+|.+|++||+.+||+|+..+|++|
T Consensus 1000 ~l~~~n~~~~~~~~~~i~c~~f~~h~s~~~~~~~~~~ei~~L~~~~sd-~~L~l~pey~~RlevLk~~g~vD~~~~V~lk 1078 (1248)
T KOG0947|consen 1000 LLERTNLQNLIQGNPCISCPKFDQHYSLARREYKIEKEIENLEFELSD-QSLLLSPEYHNRLEVLKPLGFVDEMRTVLLK 1078 (1248)
T ss_pred HHHHHHHHHHHhcCCccCCccHHHHHHHHHHHHHHHHHhhhhhhhhhh-hhhhhCHHHHHHHHHHhhcCcccccceeeec
Confidence 9999999999999999999 9999999999999999999999999999 8999999999999999999999999999999
Q ss_pred hhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 002183 786 GRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEV 865 (955)
Q Consensus 786 GrvA~eI~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~l~~ 865 (955)
|||||||++++|||+|||||+|.|.+|+|+|||||||+||||++....+.+++.+.++.+++.++++++..++..|++.+
T Consensus 1079 GRvAceI~s~~ELllteli~dn~l~~l~peeiaallSslV~e~~~e~~~~~~~~l~k~~e~v~~v~~rl~ev~~~~~~~~ 1158 (1248)
T KOG0947|consen 1079 GRVACEINSGNELLLTELIFDNALVDLSPEEIAALLSSLVCEGKTERPPTLTPYLKKGKERVRDVAKRLEEVQSSHQLLQ 1158 (1248)
T ss_pred ceeeeeecCCcchhHHHHHHhhhhhhcCHHHHHHHHHHHHhcCccccCCCCChhhhhHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999977788999999999999999999999999999999
Q ss_pred Cchh-hhhccCCccHHHHHHHHhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhc
Q 002183 866 NVDE-YVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLR 944 (955)
Q Consensus 866 ~~~~-~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ellrq~~~aa~~iG~~~L~~k~~~a~~~ik 944 (955)
++++ +.+. ++|+||+|||+||+|+||.+||++|++.||+|||||+||+|+|||+++|+.++|||.|.+||++|+++||
T Consensus 1159 ~~~e~f~~~-lrF~l~evVYeWA~G~sf~eim~~t~~~EG~iVR~I~RLdE~cre~~~aa~ivGd~~L~~Km~~as~~ik 1237 (1248)
T KOG0947|consen 1159 TPEEEFPCE-LRFGLVEVVYEWARGLSFKEIMELTDVLEGLIVRLIQRLDEVCRELRNAARIVGDPVLHEKMEAASALIK 1237 (1248)
T ss_pred Cchhhcccc-ccccHHHHHHHHHcCCCHHHHHhhhCCcchhHHHHHHHHHHHHHhhhccceecCcHHHHHHHHHHHHHhc
Confidence 8774 5555 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeecCCCC
Q 002183 945 RGIMFSNSLYL 955 (955)
Q Consensus 945 RdiVf~~SLYl 955 (955)
|||||++|||+
T Consensus 1238 RdIVFaaSLY~ 1248 (1248)
T KOG0947|consen 1238 RDIVFAASLYL 1248 (1248)
T ss_pred cCccchhhccC
Confidence 99999999997
No 3
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.3e-136 Score=1206.65 Aligned_cols=899 Identities=44% Similarity=0.679 Sum_probs=779.3
Q ss_pred cceeeecCCCCCCCchhhhcccCCCCCC-chhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHH
Q 002183 38 CVHEVAVPSGYALTKDEAIHGTFANPVY-NGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF 116 (955)
Q Consensus 38 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l 116 (955)
..+.+.+|+.|...... .+.. ...++..+||+|++||++|+.+|++|++|+|+||||||||++++|||..++
T Consensus 87 ~~~~~~~~~~~~~~~~a-------~~~~~~~~~~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al 159 (1041)
T COG4581 87 ELSDVAVPDDYDMVPDA-------ESPFDLAPPAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALAL 159 (1041)
T ss_pred cccccCCCchhcccchh-------hcccccCcHHHhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHH
Confidence 33446777775444331 0112 467889999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEccChhhHHHHHHHHHHhcCCe----eEEecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccc
Q 002183 117 RDKQRVIYTSPLKALSNQKYRELHQEFKDV----GLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192 (955)
Q Consensus 117 ~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~v----g~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH 192 (955)
.+|++++|++|+|||+||+|++|...|+++ |++|||+++|++++|+|||+|+|++|+|++...+.++.+|||||+|
T Consensus 160 ~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvH 239 (1041)
T COG4581 160 RDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVH 239 (1041)
T ss_pred HcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeee
Confidence 999999999999999999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeeccc
Q 002183 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEK 272 (955)
Q Consensus 193 ~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~ 272 (955)
||+|.+||.+||++++++|+++++|+||||+||+.+|+.|++.++..+++++++++||+||+|+++.. .++|.++|++
T Consensus 240 yi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~--~~l~~lvde~ 317 (1041)
T COG4581 240 YIGDRERGVVWEEVIILLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVG--KGLFDLVDEK 317 (1041)
T ss_pred eccccccchhHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecC--Cceeeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999865 6899999999
Q ss_pred chhchhhHHHHHHHHHHhh---ccCCccCCCCCCCccC--CCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHH
Q 002183 273 EQFREDNFVKLQDTFLKQK---IGGRRENGKASGRMAK--GGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAM 347 (955)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~ 347 (955)
+.+...++.+....+.... ........+...+..+ ++..........+++.+...+..|+|+|++|++.|+.++.
T Consensus 318 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~ 397 (1041)
T COG4581 318 KKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQ 397 (1041)
T ss_pred ccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHH
Confidence 9999899888887776321 1100000000111111 1122233444788999999999999999999999999999
Q ss_pred HhccCCCCCHHHHHH-HHHHHHHHHhhcccccCCch-hHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEc
Q 002183 348 SMSKLDFNTQEEKDT-VEQVFQNAVDCLNEEDRNLP-AIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFAT 425 (955)
Q Consensus 348 ~L~~~~~~~~~e~~~-i~~~~~~~~~~l~~~d~~~~-~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT 425 (955)
.+..+++....+++. ++.++++++..|.++|+.+| ++..+.++|.+|+++||+||.|..|+.|+++|..|.++|+|||
T Consensus 398 ~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaT 477 (1041)
T COG4581 398 ILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFAT 477 (1041)
T ss_pred HhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeeh
Confidence 999888887777777 99999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcc-cHHHHHHhHhCCCCcccc
Q 002183 426 ETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQM-EMNTLKDMVLGKPAPLVS 504 (955)
Q Consensus 426 ~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~-~~~~~~~l~~~~~~~l~s 504 (955)
+|+++|+|||+.++|+.+..||||..++++++++|+||+|||||+|.|..|++|+...+.. ++.....+..+++++|.|
T Consensus 478 eT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s 557 (1041)
T COG4581 478 ETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRS 557 (1041)
T ss_pred hhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchh
Confidence 9999999999999999999999999999999999999999999999999999999965554 489999999999999999
Q ss_pred cccCcHHHHHHhhhcccchhhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHhccccC----ChhhHHHHHHHHHHHHH
Q 002183 505 TFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDAS----GEAEVAEYHKLKLDIAQ 580 (955)
Q Consensus 505 ~f~~~~~~il~ll~~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~y~~~~~~~~~ 580 (955)
+|+++|+|++|+++++++. .+++++++||++||+....+...+++.++++++..+... ++.++..| ...+.+
T Consensus 558 ~f~~sy~milnll~v~~l~-~~e~ll~~Sf~q~~~~~~l~~~~~~l~~~~~~~~~i~~~~~~~d~~~~~~~---~~~~~k 633 (1041)
T COG4581 558 QFRLSYNMILNLLRVEGLQ-TAEDLLERSFAQFQNSRSLPEIVEKLERLEKELNDIATELFGTDENDAPKL---SLDYEK 633 (1041)
T ss_pred heecchhHHHhhhhhcccC-cHHHHHHhhHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhccccccchHHH---HHHHHH
Confidence 9999999999999999987 599999999999999999999999999999999887764 55555555 334445
Q ss_pred HHHHHHHHhcCchhhhhccCCCcEEEEccCCccceeEEEEEeecCCCCc---------ceecC-----------------
Q 002183 581 LEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKPSAG---------VGTLP----------------- 634 (955)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~l~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~----------------- 634 (955)
+++++......+.....+++.||++.++.+...+.||.++......+.. +.+.|
T Consensus 634 ~~~~l~~~~~~~a~~~r~~~~gr~~~~~~~~~~~~~g~~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (1041)
T COG4581 634 LRKKLNEEMRLQAAGLRALRKGRVVQIKDGLAALFWGRLLKLTKRYTTKLTDHELYLAVLVEPNADFSFPRPLVKAMPHM 713 (1041)
T ss_pred HHHHHHHHHHHHHhHHHHhhhcceeeeecchhhhhheeeeeeccccccccccchheehheecccCCccchhHHhhccccc
Confidence 5555555556667777899999999998887677899888776653210 11111
Q ss_pred -CCC------ceEEEeecCCccceeceeeeecCCCCCChhHHHHHHHHHHHHHHhCCCC-CCCCCccccCCCCChHHHHH
Q 002183 635 -SRG------GGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQG-LPKLNPVKDMKIEDPEVVDL 706 (955)
Q Consensus 635 -~~~------~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~ 706 (955)
.+. ...+..+++..+..+....+.+|........+..-...+......+.++ .+.+.++..|++.++++...
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~v~~~~~~~~~~~~~ 793 (1041)
T COG4581 714 NRESRWLVKILFRISFVYLLNATEILELILTMPRRLLSRQGKLRRGEPSNEAIAAGLDGNEKILENVVEMKIQVPELTVS 793 (1041)
T ss_pred ccccccccccceeeeeeeeccccccchhhhcCCHhHhhcccchhccchhHHHHHhccccchhhhhhcccccccchhHHHH
Confidence 011 1233444555555555566666754332222222333445555555555 45788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccCCCccchh
Q 002183 707 VNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLK 785 (955)
Q Consensus 707 ~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~~~~~e~~~~~~VL~~lgyid~~~~vt~K 785 (955)
..+.......+..+|.+.| .+++|++.......|..+++++...+ ..+.+.++|..+.++|+.+||++.+.+|+.|
T Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~i~~l~~~~---~~~~~l~~~~~l~~~l~~~g~~~~~~~v~~k 870 (1041)
T COG4581 794 LLKLRFGRYHLSENPLMNFDGAERLIENELLLSDLQAEIEDLSSSI---EALSFLDDYKTLQEVLKKLGFIEDNAVVLIK 870 (1041)
T ss_pred HHHHhhcccccCCCccccchHHHHHHHhHhHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHhhcCCCcccccccc
Confidence 9999999999999999999 99999999999999999999999998 4556789999999999999999998999999
Q ss_pred hhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCc----cccccchhHHHHHHHHHHHHHHHHHHHHHc
Q 002183 786 GRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSS----EQINLRMELAKPLQQLQESARKIAEIQNEC 861 (955)
Q Consensus 786 GrvA~eI~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~----~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~ 861 (955)
||+||||++++|||||||||+|.|++|+|+|+||++|||||+++++ +.+.++|.|++++..+.+++.+|.+++..|
T Consensus 871 Gr~a~eI~s~~ellL~e~i~~g~f~~l~p~e~aallSa~v~e~~~~d~~~~~~~~~~~l~~~~~~l~e~~~kl~~~~~~~ 950 (1041)
T COG4581 871 GRVAAEISSEDELLLTELIFSGEFNDLEPEELAALLSAFVFEEKTDDGTAEAPEITPALRDALLRLLELARKLNKDQNSS 950 (1041)
T ss_pred cceeeeecCCCchHHHHHHHcCCccCCCHHHHHHHHHheeeccCCcccccccccCCHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999986 346788999999999999999999999999
Q ss_pred CCCCCchhhhhccCCccHHHHHHHHhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Q 002183 862 KLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASE 941 (955)
Q Consensus 862 ~l~~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ellrq~~~aa~~iG~~~L~~k~~~a~~ 941 (955)
++++.++ ++. |.++||++||+||+|++|.+||.+|++.|||+||+++|++|+|+|+.+|+.++||++|.+||+.|+.
T Consensus 951 ~i~~~~~--l~~-~~~~lm~vv~~wa~g~s~~~i~~~~~~~eGs~vR~~~r~~ell~ql~~aa~~ig~~~L~~k~~~~~~ 1027 (1041)
T COG4581 951 QIEIYPE--LND-FSVGLMEVVYEWARGLSFADICGLTSLLEGSFVRIFRRLRELLRQLRKAASVIGNPELEEKAYRAIQ 1027 (1041)
T ss_pred CCcCCcc--ccc-ccccHHHHHHHHHhhcchhhhhcCCcccccchhhhhhHHHHHHHHhhhcccccCCHHHHHHHHHHHH
Confidence 9999876 777 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeecCCCC
Q 002183 942 SLRRGIMFSNSLYL 955 (955)
Q Consensus 942 ~ikRdiVf~~SLYl 955 (955)
.|||||||++|||+
T Consensus 1028 ~irr~iv~~~sly~ 1041 (1041)
T COG4581 1028 EIRRDIVFVDSLYL 1041 (1041)
T ss_pred hhhcCeEecccccC
Confidence 99999999999996
No 4
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.4e-53 Score=516.71 Aligned_cols=428 Identities=27% Similarity=0.399 Sum_probs=326.6
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHH-HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHH
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
|....+.....||. |+|+|.+|++. +..|+|++++||||||||++|++|++..+.++++++|++|+++|++|++++|+
T Consensus 9 p~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~ 88 (737)
T PRK02362 9 PEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFE 88 (737)
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHH
Confidence 33444445557887 99999999998 78999999999999999999999999999889999999999999999999999
Q ss_pred Hhc--C-CeeEEecccccC----CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC---
Q 002183 141 QEF--K-DVGLMTGDVTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL--- 210 (955)
Q Consensus 141 ~~~--~-~vg~~tGd~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l--- 210 (955)
.+. + .++.++|+.... ..++|+|+|||++.+++.++..+++++++||+||+|.+.+.+||..++.++..+
T Consensus 89 ~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~ 168 (737)
T PRK02362 89 RFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRL 168 (737)
T ss_pred HhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhc
Confidence 752 3 788899987654 368999999999999988777778999999999999999999999999887654
Q ss_pred CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHh
Q 002183 211 PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQ 290 (955)
Q Consensus 211 ~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (955)
+++.|+|+||||++|..++++|++. ..+...+||+|+...++..+ .++.. +....+.
T Consensus 169 ~~~~qii~lSATl~n~~~la~wl~~------~~~~~~~rpv~l~~~v~~~~--~~~~~-~~~~~~~-------------- 225 (737)
T PRK02362 169 NPDLQVVALSATIGNADELADWLDA------ELVDSEWRPIDLREGVFYGG--AIHFD-DSQREVE-------------- 225 (737)
T ss_pred CCCCcEEEEcccCCCHHHHHHHhCC------CcccCCCCCCCCeeeEecCC--eeccc-cccccCC--------------
Confidence 5789999999999999999999974 24667889999987664322 11100 0000000
Q ss_pred hccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCC--CCHHHHHHHHHHHH
Q 002183 291 KIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDF--NTQEEKDTVEQVFQ 368 (955)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~--~~~~e~~~i~~~~~ 368 (955)
.........++..... ..+++||||+|++.|+.+|..|..... ....+...+....+
T Consensus 226 --------------------~~~~~~~~~~~~~~~~-~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~ 284 (737)
T PRK02362 226 --------------------VPSKDDTLNLVLDTLE-EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAE 284 (737)
T ss_pred --------------------CccchHHHHHHHHHHH-cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence 0001112222222222 457999999999999999999975321 12222333333222
Q ss_pred HHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceecc
Q 002183 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448 (955)
Q Consensus 369 ~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d 448 (955)
. +.... .......+..++..||++|||||++.+|+.+++.|++|.++|||||+++++|||+|+++|||.+...||
T Consensus 285 ~----l~~~~-~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd 359 (737)
T PRK02362 285 E----IREVS-DTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYD 359 (737)
T ss_pred H----HHhcc-CccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeec
Confidence 2 21111 111235678889999999999999999999999999999999999999999999999999999888899
Q ss_pred CC-CCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCccc-HHHHHHhHhCCCCcccccccCcHHHHHHhh---hcccch
Q 002183 449 GD-SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQME-MNTLKDMVLGKPAPLVSTFRLSYYSILNLM---SRAEGQ 523 (955)
Q Consensus 449 ~~-~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~-~~~~~~l~~~~~~~l~s~f~~~~~~il~ll---~~~~~~ 523 (955)
+. +..|.++.+|.||+|||||.|.+..|.+++++.+..+ .+.+++++.+.+.|+.|++...+.+.-.++ ....+.
T Consensus 360 ~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~ 439 (737)
T PRK02362 360 GGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFAR 439 (737)
T ss_pred CCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccC
Confidence 65 3468999999999999999999999999999976533 344678888899999999976554443333 221111
Q ss_pred --hhHHHHHHhhHHHHHh
Q 002183 524 --FTAEHVIKNSFHQFQY 539 (955)
Q Consensus 524 --~~~~~~l~~sf~~~~~ 539 (955)
.+..+++..+|+.++.
T Consensus 440 ~~~d~~~~l~~Tf~~~~~ 457 (737)
T PRK02362 440 TRDGLLEFLEATFYATQT 457 (737)
T ss_pred CHHHHHHHHHhChHHhhc
Confidence 2477889999987654
No 5
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-50 Score=493.46 Aligned_cols=420 Identities=29% Similarity=0.426 Sum_probs=321.5
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHH-HhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQ 141 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~~ 141 (955)
...+.....||+ |+|+|.+|++. +..|++++++||||||||++|++|++..+. ++.++||++|+++|++|++++|..
T Consensus 11 ~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~ 90 (720)
T PRK00254 11 RIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKD 90 (720)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHH
Confidence 344445557887 99999999986 799999999999999999999999988764 678999999999999999999986
Q ss_pred hc--C-CeeEEecccccC----CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcc
Q 002183 142 EF--K-DVGLMTGDVTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 214 (955)
Q Consensus 142 ~~--~-~vg~~tGd~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~ 214 (955)
+. + .++.++|+.... .+++|+|+|||++.+++.+...+++++++||+||+|.+.+.+||..++.++..++...
T Consensus 91 ~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~ 170 (720)
T PRK00254 91 WEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRA 170 (720)
T ss_pred HhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCC
Confidence 42 2 688899987643 3589999999999999887777889999999999999999999999999999998899
Q ss_pred eEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccC
Q 002183 215 KMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGG 294 (955)
Q Consensus 215 ~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 294 (955)
|+|++|||++|..++++|++. ..+..++||+|+...++..+ +...... .. ..+
T Consensus 171 qiI~lSATl~n~~~la~wl~~------~~~~~~~rpv~l~~~~~~~~----~~~~~~~-~~--~~~-------------- 223 (720)
T PRK00254 171 QILGLSATVGNAEELAEWLNA------ELVVSDWRPVKLRKGVFYQG----FLFWEDG-KI--ERF-------------- 223 (720)
T ss_pred cEEEEEccCCCHHHHHHHhCC------ccccCCCCCCcceeeEecCC----eeeccCc-ch--hcc--------------
Confidence 999999999999999999974 23566789999876544321 1111100 00 000
Q ss_pred CccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHHHh
Q 002183 295 RRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL--DFNTQEEKDTVEQVFQNAVD 372 (955)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~--~~~~~~e~~~i~~~~~~~~~ 372 (955)
......++..... ...++||||+||+.|+.+|..|... .+....+...+....+
T Consensus 224 -------------------~~~~~~~~~~~i~-~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~---- 279 (720)
T PRK00254 224 -------------------PNSWESLVYDAVK-KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELAD---- 279 (720)
T ss_pred -------------------hHHHHHHHHHHHH-hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH----
Confidence 0011122222222 3478999999999999999888542 1111112222222221
Q ss_pred hcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCC
Q 002183 373 CLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH 452 (955)
Q Consensus 373 ~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~ 452 (955)
.+.. .+....+..++..||++|||||++.+|..+++.|++|.++|||||+++++|||+|++++||.....|+..+.
T Consensus 280 ~~~~----~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~ 355 (720)
T PRK00254 280 SLEE----NPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGW 355 (720)
T ss_pred HHhc----CCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCc
Confidence 1111 112346778889999999999999999999999999999999999999999999999999998888876555
Q ss_pred cccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCcccccccCc---HHHHHHhhhcccch--hhHH
Q 002183 453 RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLS---YYSILNLMSRAEGQ--FTAE 527 (955)
Q Consensus 453 ~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~f~~~---~~~il~ll~~~~~~--~~~~ 527 (955)
.+.+..+|.||+|||||.|.+..|.++++++.....+.+++++.+.++++.+.+... ...+++.+....+. .+.-
T Consensus 356 ~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~ 435 (720)
T PRK00254 356 EDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELV 435 (720)
T ss_pred eeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHH
Confidence 677889999999999999999999999998765334567889999999988887653 34455555433332 2456
Q ss_pred HHHHhhHHHHHh
Q 002183 528 HVIKNSFHQFQY 539 (955)
Q Consensus 528 ~~l~~sf~~~~~ 539 (955)
+++..+|..++.
T Consensus 436 ~~l~~Tf~~~~~ 447 (720)
T PRK00254 436 NFLERTFYAHQR 447 (720)
T ss_pred HHHHhCHHHHhh
Confidence 789999987654
No 6
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-50 Score=491.56 Aligned_cols=409 Identities=28% Similarity=0.416 Sum_probs=318.7
Q ss_pred chhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-
Q 002183 66 NGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK- 144 (955)
Q Consensus 66 ~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~- 144 (955)
..+.....+|+|+|+|.++++.+.+|++++++||||||||++|+++++..+..+.++||++|+++|++|++++|+++..
T Consensus 12 ~~~~~~~~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~ 91 (674)
T PRK01172 12 FLNLFTGNDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSL 91 (674)
T ss_pred HHHHHhhCCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhc
Confidence 3334445689999999999999999999999999999999999999999998899999999999999999999987532
Q ss_pred --CeeEEecccccC----CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh---CCCcce
Q 002183 145 --DVGLMTGDVTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF---LPPAIK 215 (955)
Q Consensus 145 --~vg~~tGd~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~---l~~~~~ 215 (955)
.++..+|+.... ..++|+|+|||++..++.++...+.++++||+||||.+.+.+||..++.++.. ++++.|
T Consensus 92 g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~r 171 (674)
T PRK01172 92 GMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDAR 171 (674)
T ss_pred CCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCc
Confidence 678888987543 36899999999999998887777899999999999999999999999987654 457899
Q ss_pred EEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCC
Q 002183 216 MVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGR 295 (955)
Q Consensus 216 ~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 295 (955)
+|++|||++|..++++|++. ..+...+||+|+...+.... ..+ .+...
T Consensus 172 iI~lSATl~n~~~la~wl~~------~~~~~~~r~vpl~~~i~~~~--~~~--~~~~~---------------------- 219 (674)
T PRK01172 172 ILALSATVSNANELAQWLNA------SLIKSNFRPVPLKLGILYRK--RLI--LDGYE---------------------- 219 (674)
T ss_pred EEEEeCccCCHHHHHHHhCC------CccCCCCCCCCeEEEEEecC--eee--ecccc----------------------
Confidence 99999999999999999963 34567789999886543221 111 11000
Q ss_pred ccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcc
Q 002183 296 RENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLN 375 (955)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~ 375 (955)
.....+..++..... +++++||||++++.|+.++..|......... . .+.
T Consensus 220 ----------------~~~~~~~~~i~~~~~-~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~------------~-~~~ 269 (674)
T PRK01172 220 ----------------RSQVDINSLIKETVN-DGGQVLVFVSSRKNAEDYAEMLIQHFPEFND------------F-KVS 269 (674)
T ss_pred ----------------cccccHHHHHHHHHh-CCCcEEEEeccHHHHHHHHHHHHHhhhhccc------------c-ccc
Confidence 001112333333222 4579999999999999999998653211000 0 000
Q ss_pred cccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCccc
Q 002183 376 EEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYI 455 (955)
Q Consensus 376 ~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~ 455 (955)
..+ .......+..++.+||++|||||++.+|+.+++.|++|.++|||||+++++|||+|+..|||.....|+....+|.
T Consensus 270 ~~~-~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~ 348 (674)
T PRK01172 270 SEN-NNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYL 348 (674)
T ss_pred ccc-cccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeC
Confidence 000 0011245677888999999999999999999999999999999999999999999999999988888988777899
Q ss_pred CHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCcccccccCcHHHHHHhh---hc---ccchhhHHHH
Q 002183 456 GSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLM---SR---AEGQFTAEHV 529 (955)
Q Consensus 456 s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~f~~~~~~il~ll---~~---~~~~~~~~~~ 529 (955)
++.+|.||+|||||.|.++.|.+++++....+.+.+++++.+.+.|+.|.+.....+-.|++ .. .+. .+..++
T Consensus 349 s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~-~d~~~~ 427 (674)
T PRK01172 349 SNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSM-EDLILF 427 (674)
T ss_pred CHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCH-HHHHHH
Confidence 99999999999999999999999888866545667889999999999998864433333322 11 121 247778
Q ss_pred HHhhHHHHH
Q 002183 530 IKNSFHQFQ 538 (955)
Q Consensus 530 l~~sf~~~~ 538 (955)
+..+|...+
T Consensus 428 l~~tf~~~~ 436 (674)
T PRK01172 428 YNETLMAIQ 436 (674)
T ss_pred HHhhhhHhc
Confidence 888998664
No 7
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.9e-51 Score=486.81 Aligned_cols=427 Identities=31% Similarity=0.408 Sum_probs=315.9
Q ss_pred chhhhhcCCC-CCCHHHHHHHHHH-hcCCcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEEccChhhHHHHHHHHH--
Q 002183 66 NGEMAKTYSF-ELDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELH-- 140 (955)
Q Consensus 66 ~~~~~~~~~f-~l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l~PtkaLa~Q~~~~l~-- 140 (955)
.....+..++ ++.+.|+.++... ..|+|++|++|||||||++|+++|+..+.. +.+++|++|+|||++|++++|+
T Consensus 20 v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~ 99 (766)
T COG1204 20 VLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRL 99 (766)
T ss_pred HHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhH
Confidence 3344445566 5888888888774 567999999999999999999999999987 5899999999999999999999
Q ss_pred HhcC-CeeEEecccccCC----CCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCC---C
Q 002183 141 QEFK-DVGLMTGDVTLSP----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP---P 212 (955)
Q Consensus 141 ~~~~-~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~---~ 212 (955)
+.++ +|+..|||..... +++|+|+|||++.+.+.+...++.++++||+||+|.+.|..||++.+.++..+. .
T Consensus 100 ~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~ 179 (766)
T COG1204 100 EELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE 179 (766)
T ss_pred HhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc
Confidence 4455 8999999998654 789999999999999998888999999999999999999999999999987654 3
Q ss_pred cceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhc
Q 002183 213 AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKI 292 (955)
Q Consensus 213 ~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (955)
.+|+++||||+||..++++|++.. .+.+.++|+|+...++... .+...+...+..
T Consensus 180 ~~rivgLSATlpN~~evA~wL~a~------~~~~~~rp~~l~~~v~~~~---~~~~~~~~~k~~---------------- 234 (766)
T COG1204 180 LIRIVGLSATLPNAEEVADWLNAK------LVESDWRPVPLRRGVPYVG---AFLGADGKKKTW---------------- 234 (766)
T ss_pred ceEEEEEeeecCCHHHHHHHhCCc------ccccCCCCcccccCCccce---EEEEecCccccc----------------
Confidence 489999999999999999999743 3367788888765443211 111111111000
Q ss_pred cCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHH
Q 002183 293 GGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK--LDFNTQEEKDTVEQVFQNA 370 (955)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~--~~~~~~~e~~~i~~~~~~~ 370 (955)
.......+..++....+ ++++++|||+||+.+...|..+.. ....+..+...........
T Consensus 235 -----------------~~~~~~~~~~~v~~~~~-~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~ 296 (766)
T COG1204 235 -----------------PLLIDNLALELVLESLA-EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPI 296 (766)
T ss_pred -----------------cccchHHHHHHHHHHHh-cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhcccccccc
Confidence 00011222223322222 457999999999999999999984 1111111111111111100
Q ss_pred HhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceecc-C
Q 002183 371 VDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD-G 449 (955)
Q Consensus 371 ~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d-~ 449 (955)
. ..+......+.+.+++.+|+++||+||+..+|..+++.|++|.++|||||+|+|+|+|.|+.+|||.....|| .
T Consensus 297 ~----~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~ 372 (766)
T COG1204 297 L----IPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPK 372 (766)
T ss_pred c----cccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCC
Confidence 0 0111222347889999999999999999999999999999999999999999999999999999999999999 3
Q ss_pred CCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCccc-HHHHHHhHhCCCCcccccccCcHHHHHHhh---hcccc-h-
Q 002183 450 DSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQME-MNTLKDMVLGKPAPLVSTFRLSYYSILNLM---SRAEG-Q- 523 (955)
Q Consensus 450 ~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~-~~~~~~l~~~~~~~l~s~f~~~~~~il~ll---~~~~~-~- 523 (955)
.+.+++++-+|.||.|||||.|.|..|..+++++...+ .......+.+.++++.|.+-..-+.-..++ ...+. +
T Consensus 373 ~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~ 452 (766)
T COG1204 373 GGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSW 452 (766)
T ss_pred CCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhH
Confidence 44678999999999999999999999999999955433 445567778888886665544332211222 11111 1
Q ss_pred hhHHHHHHhhHHHHHh
Q 002183 524 FTAEHVIKNSFHQFQY 539 (955)
Q Consensus 524 ~~~~~~l~~sf~~~~~ 539 (955)
....++..+.|+..|.
T Consensus 453 ~~~~~f~~~t~~~~~~ 468 (766)
T COG1204 453 LELTDFYERTFYNPQT 468 (766)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 1355677777776664
No 8
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-50 Score=449.77 Aligned_cols=348 Identities=20% Similarity=0.223 Sum_probs=271.4
Q ss_pred ccCCCCCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---------CCeEEEEcc
Q 002183 58 GTFANPVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---------KQRVIYTSP 127 (955)
Q Consensus 58 ~~~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---------~~~vl~l~P 127 (955)
..+..+.......+..+|+ |+|+|.++||.+..|+|++..|.||||||++|++|++..+.+ ++++||++|
T Consensus 94 ~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~P 173 (519)
T KOG0331|consen 94 QELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAP 173 (519)
T ss_pred hcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcC
Confidence 3344444455556678999 999999999999999999999999999999999999998865 689999999
Q ss_pred ChhhHHHHHHHHHHhcCC----eeEEecccccC-------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCC
Q 002183 128 LKALSNQKYRELHQEFKD----VGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 128 tkaLa~Q~~~~l~~~~~~----vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
||+||+|+.+++.++... ..+++|+.+.. ..++|+|+||++|.+++..+...++++.++|+||||+|+|
T Consensus 174 TRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMld 253 (519)
T KOG0331|consen 174 TRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLD 253 (519)
T ss_pred cHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhc
Confidence 999999999999998773 55788998754 4689999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhC-CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchh
Q 002183 197 RERGVVWEESIIFL-PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQF 275 (955)
Q Consensus 197 ~~rg~~~~~ii~~l-~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~ 275 (955)
.+|.+.++.++..+ ++..|++++|||+|.. +......+..++..+.......-...+ +..++..+++.
T Consensus 254 mGFe~qI~~Il~~i~~~~rQtlm~saTwp~~--v~~lA~~fl~~~~~i~ig~~~~~~a~~-----~i~qive~~~~---- 322 (519)
T KOG0331|consen 254 MGFEPQIRKILSQIPRPDRQTLMFSATWPKE--VRQLAEDFLNNPIQINVGNKKELKANH-----NIRQIVEVCDE---- 322 (519)
T ss_pred cccHHHHHHHHHhcCCCcccEEEEeeeccHH--HHHHHHHHhcCceEEEecchhhhhhhc-----chhhhhhhcCH----
Confidence 99999999999999 5556899999999943 223333333344444332221000000 00011111110
Q ss_pred chhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCC
Q 002183 276 REDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFN 355 (955)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~ 355 (955)
......+..++..+.....+++||||.+++.|+.++..+...+++
T Consensus 323 -----------------------------------~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~ 367 (519)
T KOG0331|consen 323 -----------------------------------TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWP 367 (519)
T ss_pred -----------------------------------HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcc
Confidence 011334556666665556689999999999999999999876555
Q ss_pred CHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC
Q 002183 356 TQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP 435 (955)
Q Consensus 356 ~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip 435 (955)
+..+||+.++.+|+.+++.|++|...|||||+++|+|+|+|
T Consensus 368 ---------------------------------------a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~ 408 (519)
T KOG0331|consen 368 ---------------------------------------AVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVP 408 (519)
T ss_pred ---------------------------------------eeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCc
Confidence 57899999999999999999999999999999999999999
Q ss_pred CcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCC
Q 002183 436 AKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGK 498 (955)
Q Consensus 436 ~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~ 498 (955)
++++|| +||. |.++++|+||+||+||+|..+.+..|+...+......+.+.+...
T Consensus 409 dV~lVI----nydf----P~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~ 463 (519)
T KOG0331|consen 409 DVDLVI----NYDF----PNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREA 463 (519)
T ss_pred cccEEE----eCCC----CCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHc
Confidence 999999 9999 999999999999999999865555554444333344444444433
No 9
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [].; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.
Probab=100.00 E-value=3.4e-51 Score=410.18 Aligned_cols=177 Identities=47% Similarity=0.793 Sum_probs=148.0
Q ss_pred ccCCCccchhhhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCccc---cccchhHHHHHHHHHHHHH
Q 002183 776 IDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQ---INLRMELAKPLQQLQESAR 852 (955)
Q Consensus 776 id~~~~vt~KGrvA~eI~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~---~~~~~~l~~~~~~l~~~~~ 852 (955)
||+++.||+|||+||+|+++|||++|||||+|+|++|+|+||||+|||||||++.++. ..+++.+.++++++.++++
T Consensus 1 id~~~~vt~kGr~a~~I~~~~eLl~te~l~~g~f~~L~p~elAa~lS~~v~e~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 80 (180)
T PF08148_consen 1 IDEDNVVTLKGRVACEIYSEDELLLTELLFSGVFDDLDPAELAALLSCFVYEPRREDEEERYPPSPRLREALEQLQEIAE 80 (180)
T ss_dssp B-TTS-BSHHHHHHCC--SSTHHHHHHHHHCTCCCCS-HHHHHHHHHHHC-----SS---------HHHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHcCcccHHHHHHHHcCCCCCCCHHHHHHHHHHhhcccccCcccccccccHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999988765 2233489999999999999
Q ss_pred HHHHHHHHcCCCCCchhhhhccCCccHHHHHHHHhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHH
Q 002183 853 KIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNL 932 (955)
Q Consensus 853 ~i~~~~~~~~l~~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ellrq~~~aa~~iG~~~L 932 (955)
+|.+++.+||+ +.++|+.+ ++|+||++||+||+|+||++||++|+++|||||||+||++||||||++||+++||++|
T Consensus 81 ~l~~~~~~~~l--~~~~~~~~-~~~~l~~~v~~Wa~G~~~~~i~~~t~l~EGdiVR~~rRl~dlLrql~~aa~~~g~~~L 157 (180)
T PF08148_consen 81 RLAKVEREHGL--DEEEYVER-FDPGLMEVVYAWASGASFAEILEMTDLFEGDIVRWIRRLIDLLRQLANAAKIIGDPEL 157 (180)
T ss_dssp HHHHHHHHTT---HHHHHHHC-STTTTHHHHHHHHCT--HHHHCCT-SS-HHHHHHHHHHHHHHHHHHHHHHHCCT-HHH
T ss_pred HHHHHHHHhCC--CCcccccC-CCccHHHHHHHHHCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999 77789999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCeeeecCCCC
Q 002183 933 EKKFAAASESLRRGIMFSNSLYL 955 (955)
Q Consensus 933 ~~k~~~a~~~ikRdiVf~~SLYl 955 (955)
++|+++|+++|||||||++||||
T Consensus 158 ~~~~~~a~~~i~R~iV~~~SLYl 180 (180)
T PF08148_consen 158 AEKAREAIDLIRRDIVFASSLYL 180 (180)
T ss_dssp HHHHHHHHHHHSHCCCC---TT-
T ss_pred HHHHHHHHHhccCCccccccccC
Confidence 99999999999999999999997
No 10
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-48 Score=406.86 Aligned_cols=325 Identities=20% Similarity=0.259 Sum_probs=265.4
Q ss_pred chhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC---CeEEEEccChhhHHHHHHHHHH
Q 002183 66 NGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK---QRVIYTSPLKALSNQKYRELHQ 141 (955)
Q Consensus 66 ~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~---~~vl~l~PtkaLa~Q~~~~l~~ 141 (955)
.-+.....+|. |+++|++|||.++.|+++|..|.||||||.+|.+||++.|... .+++|++|||+||.|+...|..
T Consensus 72 L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~ 151 (476)
T KOG0330|consen 72 LLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEA 151 (476)
T ss_pred HHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHH
Confidence 33444566788 9999999999999999999999999999999999999999653 5799999999999999999999
Q ss_pred hcCCe----eEEecccc-------cCCCCCEEEEeHHHHHHHHhc-CCccCCccceEEEEccccCCCCCChHHHHHHHHh
Q 002183 142 EFKDV----GLMTGDVT-------LSPNASCLVMTTEILRGMLYR-GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (955)
Q Consensus 142 ~~~~v----g~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~ 209 (955)
++..+ ..+.|+.. +.+.++|+|+||++|.+++.+ +...++.++++|+||||+++|..|+..++.++..
T Consensus 152 Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ 231 (476)
T KOG0330|consen 152 LGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKV 231 (476)
T ss_pred hccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHh
Confidence 87744 45778764 456899999999999999984 4456889999999999999999999999999999
Q ss_pred CCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCC-Cccc--ceEEEeecCCCceEEeecccchhchhhHHHHHHH
Q 002183 210 LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDF-RPTP--LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDT 286 (955)
Q Consensus 210 l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~-rp~p--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (955)
+|...|++++|||++... ..........|..+..+.. +.++ .++|++..+ +
T Consensus 232 ip~erqt~LfsATMt~kv--~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~----------k-------------- 285 (476)
T KOG0330|consen 232 IPRERQTFLFSATMTKKV--RKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG----------K-------------- 285 (476)
T ss_pred cCccceEEEEEeecchhh--HHHHhhccCCCeEEeccchhcchHHhhhheEeccc----------c--------------
Confidence 999999999999999543 3444444556666655443 3332 123332211 1
Q ss_pred HHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 002183 287 FLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366 (955)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~ 366 (955)
.+-..|+..+.+..+.++||||++...++.++-.|+.+++.+
T Consensus 286 ----------------------------~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a---------- 327 (476)
T KOG0330|consen 286 ----------------------------DKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQA---------- 327 (476)
T ss_pred ----------------------------ccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcce----------
Confidence 111244555555566899999999999999999999988874
Q ss_pred HHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEeccee
Q 002183 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446 (955)
Q Consensus 367 ~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~ 446 (955)
-.+||.|++..|.-.++.|++|...||+|||+++||+|+|.+++|| +
T Consensus 328 -----------------------------~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VV----N 374 (476)
T KOG0330|consen 328 -----------------------------IPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVV----N 374 (476)
T ss_pred -----------------------------ecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEE----e
Confidence 4689999999999999999999999999999999999999999999 9
Q ss_pred ccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHh
Q 002183 447 WDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDM 494 (955)
Q Consensus 447 ~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l 494 (955)
||. |.+..+|+||+||+||+|.. |.+|.+++. .+.+.+.++
T Consensus 375 yDi----P~~skDYIHRvGRtaRaGrs--G~~ItlVtq-yDve~~qrI 415 (476)
T KOG0330|consen 375 YDI----PTHSKDYIHRVGRTARAGRS--GKAITLVTQ-YDVELVQRI 415 (476)
T ss_pred cCC----CCcHHHHHHHcccccccCCC--cceEEEEeh-hhhHHHHHH
Confidence 999 99999999999999999975 555555555 344444443
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-47 Score=441.50 Aligned_cols=326 Identities=25% Similarity=0.355 Sum_probs=269.0
Q ss_pred hhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc--CC--e-EEEEccChhhHHHHHHHHH
Q 002183 67 GEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQ--R-VIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 67 ~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~--~~--~-vl~l~PtkaLa~Q~~~~l~ 140 (955)
.......||+ |||+|.++||.++.|+|++++|+||||||++|.+|+++.+.. .. . +|+++|||+||.|+++++.
T Consensus 41 l~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~ 120 (513)
T COG0513 41 LQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELR 120 (513)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHH
Confidence 3334448998 999999999999999999999999999999999999999862 21 2 9999999999999999998
Q ss_pred HhcC-----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHH
Q 002183 141 QEFK-----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208 (955)
Q Consensus 141 ~~~~-----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~ 208 (955)
.+.. .+..++|+.+. ..+++|+|+||++|.+++.++...++++.++|+||||+|+|.+|...++.++.
T Consensus 121 ~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~ 200 (513)
T COG0513 121 KLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILK 200 (513)
T ss_pred HHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHH
Confidence 8765 35678898764 33699999999999999999988899999999999999999999999999999
Q ss_pred hCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCC----cccceEEEeecCCCceEEeecccchhchhhHHHHH
Q 002183 209 FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR----PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQ 284 (955)
Q Consensus 209 ~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~r----p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (955)
.+|.+.|++++|||+|+ .+..|...+..+|..+...... +..+.++++ .+....
T Consensus 201 ~~p~~~qtllfSAT~~~--~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~---------~v~~~~----------- 258 (513)
T COG0513 201 ALPPDRQTLLFSATMPD--DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYL---------EVESEE----------- 258 (513)
T ss_pred hCCcccEEEEEecCCCH--HHHHHHHHHccCCcEEEEccccccccccCceEEEE---------EeCCHH-----------
Confidence 99999999999999997 4788988888888766555221 222333322 222211
Q ss_pred HHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHH
Q 002183 285 DTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVE 364 (955)
Q Consensus 285 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~ 364 (955)
..+..+...+......++||||+++..|+.++..|...++.
T Consensus 259 ------------------------------~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~--------- 299 (513)
T COG0513 259 ------------------------------EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFK--------- 299 (513)
T ss_pred ------------------------------HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCe---------
Confidence 12223344444445557999999999999999999887765
Q ss_pred HHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecc
Q 002183 365 QVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV 444 (955)
Q Consensus 365 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~ 444 (955)
+..+||+|++.+|..++..|++|.++||||||+++||||+|++++||
T Consensus 300 ------------------------------~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vi--- 346 (513)
T COG0513 300 ------------------------------VAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVI--- 346 (513)
T ss_pred ------------------------------EEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeE---
Confidence 68999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHH
Q 002183 445 KKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKD 493 (955)
Q Consensus 445 ~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~ 493 (955)
+||+ |.+++.|+||+||+||+|.. |.++.++++..+...+.+
T Consensus 347 -nyD~----p~~~e~yvHRiGRTgRaG~~--G~ai~fv~~~~e~~~l~~ 388 (513)
T COG0513 347 -NYDL----PLDPEDYVHRIGRTGRAGRK--GVAISFVTEEEEVKKLKR 388 (513)
T ss_pred -EccC----CCCHHHheeccCccccCCCC--CeEEEEeCcHHHHHHHHH
Confidence 9999 99999999999999999985 566666654323333333
No 12
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1e-47 Score=415.27 Aligned_cols=348 Identities=30% Similarity=0.465 Sum_probs=280.3
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHH-HhcCCcEEEEcCCCCchHHHHHHHHHHH-HhcCCeEEEEccChhhHHHHHHHH
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~~~i~~~-l~~~~~vl~l~PtkaLa~Q~~~~l 139 (955)
|.....+.+..|++ |.|+|.-|+.+ ++.|+|.+|+++|+||||+++++|-+.. +..|++.+|++|..|||||+|++|
T Consensus 202 pe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF 281 (830)
T COG1202 202 PEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDF 281 (830)
T ss_pred cHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHH
Confidence 44555667778898 99999999998 8999999999999999999999986554 455999999999999999999999
Q ss_pred HHhcCCeeEE----eccc-----------ccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHH
Q 002183 140 HQEFKDVGLM----TGDV-----------TLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204 (955)
Q Consensus 140 ~~~~~~vg~~----tGd~-----------~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~ 204 (955)
++.+.+.|+- .|-. ...++++|+|+|+|-+..++..+ ..+.+++.|||||+|.+.|.+||+.+.
T Consensus 282 ~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLd 360 (830)
T COG1202 282 KERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLD 360 (830)
T ss_pred HHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchh
Confidence 9998865542 2322 23458999999999999888877 568999999999999999999999998
Q ss_pred HHHHh---CCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEE-eecCCCceEEeecccchhchhhH
Q 002183 205 ESIIF---LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYV-FPVGGSGLYLVVDEKEQFREDNF 280 (955)
Q Consensus 205 ~ii~~---l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 280 (955)
-++.. +-+..|+|+||||+.|+.+++..++ ...+..+.||+|++.++ +..+ +..++
T Consensus 361 GLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~------a~lV~y~~RPVplErHlvf~~~---------e~eK~----- 420 (830)
T COG1202 361 GLIGRLRYLFPGAQFIYLSATVGNPEELAKKLG------AKLVLYDERPVPLERHLVFARN---------ESEKW----- 420 (830)
T ss_pred hHHHHHHHhCCCCeEEEEEeecCChHHHHHHhC------CeeEeecCCCCChhHeeeeecC---------chHHH-----
Confidence 88765 4468999999999999999999986 46788899999998544 3221 11111
Q ss_pred HHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHH
Q 002183 281 VKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360 (955)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~ 360 (955)
.+...+.+....... ...-.+++|||++||+.|..+|..|...|+.
T Consensus 421 -~ii~~L~k~E~~~~s----------------------------skg~rGQtIVFT~SRrr~h~lA~~L~~kG~~----- 466 (830)
T COG1202 421 -DIIARLVKREFSTES----------------------------SKGYRGQTIVFTYSRRRCHELADALTGKGLK----- 466 (830)
T ss_pred -HHHHHHHHHHHhhhh----------------------------ccCcCCceEEEecchhhHHHHHHHhhcCCcc-----
Confidence 111122111110000 0012478999999999999999999887776
Q ss_pred HHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEE
Q 002183 361 DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440 (955)
Q Consensus 361 ~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vV 440 (955)
...||+||+..+|..++..|.++.+.++|+|.+++.|+|+|+-.||
T Consensus 467 ----------------------------------a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVI 512 (830)
T COG1202 467 ----------------------------------AAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVI 512 (830)
T ss_pred ----------------------------------cccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHH
Confidence 4689999999999999999999999999999999999999999999
Q ss_pred EecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc---------ccHHHHHHhHhCCCCccc
Q 002183 441 FTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ---------MEMNTLKDMVLGKPAPLV 503 (955)
Q Consensus 441 i~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~---------~~~~~~~~l~~~~~~~l~ 503 (955)
|.+.. .+..|+++.+|.||.|||||.+.+..|.|++++.+. .+.+..-+++.+.++|..
T Consensus 513 FEsLa----MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~ 580 (830)
T COG1202 513 FESLA----MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVI 580 (830)
T ss_pred HHHHH----cccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcce
Confidence 97765 455699999999999999999999999999998665 234455566666666553
No 13
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.5e-47 Score=437.88 Aligned_cols=401 Identities=27% Similarity=0.415 Sum_probs=313.8
Q ss_pred hcCCCC-CCHHHHHHHHHH-hcCCcEEEEcCCCCchHHHHHHHHHHHHh----------cCCeEEEEccChhhHHHHHHH
Q 002183 71 KTYSFE-LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFR----------DKQRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~~~i~~~l~----------~~~~vl~l~PtkaLa~Q~~~~ 138 (955)
..|+|+ ++.+|.+++|.+ ..+.|.|||||||||||.+|+++|++.++ .+-+++|++|+||||.++++.
T Consensus 104 ~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~ 183 (1230)
T KOG0952|consen 104 GFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDK 183 (1230)
T ss_pred hcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHH
Confidence 457888 999999999886 88899999999999999999999999997 457999999999999999999
Q ss_pred HHHhcC----CeeEEecccccCC----CCCEEEEeHHHHHHHHhcC---CccCCccceEEEEccccCCCCCChHHHHHHH
Q 002183 139 LHQEFK----DVGLMTGDVTLSP----NASCLVMTTEILRGMLYRG---SEVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (955)
Q Consensus 139 l~~~~~----~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~~---~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii 207 (955)
|.+.+. .|+-+|||.+... .++|+|+|||++.-.-.+. ...++.+++||+||+|.+.| .||+++|.+.
T Consensus 184 ~~kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEtiV 262 (1230)
T KOG0952|consen 184 FSKKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETIV 262 (1230)
T ss_pred HhhhcccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHHH
Confidence 999887 5667999998754 6899999999986433322 24578899999999998877 6999999887
Q ss_pred HhC-------CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhH
Q 002183 208 IFL-------PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNF 280 (955)
Q Consensus 208 ~~l-------~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (955)
..+ ...+++|+||||+||..+++.|++.........+...+||+|+....+..... +..+...++
T Consensus 263 aRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~--------~~~~~~~~~ 334 (1230)
T KOG0952|consen 263 ARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGK--------KNRQQKKNI 334 (1230)
T ss_pred HHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecc--------cchhhhhhH
Confidence 543 35789999999999999999999987556678888899999998765432110 111111111
Q ss_pred HHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHH
Q 002183 281 VKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360 (955)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~ 360 (955)
. .....++++.+. ++.+++|||.+|+.+-..|+.|.+....
T Consensus 335 d--------------------------------~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~----- 375 (1230)
T KOG0952|consen 335 D--------------------------------EVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAET----- 375 (1230)
T ss_pred H--------------------------------HHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHh-----
Confidence 1 111223334333 4579999999999999999998653211
Q ss_pred HHHHHHHHHHHhhcccccCCchh--HHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcE
Q 002183 361 DTVEQVFQNAVDCLNEEDRNLPA--IELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKT 438 (955)
Q Consensus 361 ~~i~~~~~~~~~~l~~~d~~~~~--~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~ 438 (955)
.+..+..++. .+.+.++..+|+++||+||...+|..++..|..|.++||+||.|+|+|+|+|+-.
T Consensus 376 -------------~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~a 442 (1230)
T KOG0952|consen 376 -------------NGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYA 442 (1230)
T ss_pred -------------cCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceE
Confidence 1222333332 3678899999999999999999999999999999999999999999999999999
Q ss_pred EEEecceeccCCC--CcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCcccccccCcHHHHHHh
Q 002183 439 VVFTAVKKWDGDS--HRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNL 516 (955)
Q Consensus 439 vVi~~~~~~d~~~--~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~f~~~~~~il~l 516 (955)
|||.++.-||... +..++.-+.+|+.|||||.+.+..|.++++++.. ....+..++.+ ..|++|+|....---||.
T Consensus 443 ViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d-kl~~Y~sLl~~-~~piES~~~~~L~dnLnA 520 (1230)
T KOG0952|consen 443 VIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD-KLDHYESLLTG-QNPIESQLLPCLIDNLNA 520 (1230)
T ss_pred EEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc-HHHHHHHHHcC-CChhHHHHHHHHHHhhhh
Confidence 9999999999976 6677889999999999999999999999998665 45566777765 578999997654333332
Q ss_pred ----hhcccchhhHHHHHHhhHH
Q 002183 517 ----MSRAEGQFTAEHVIKNSFH 535 (955)
Q Consensus 517 ----l~~~~~~~~~~~~l~~sf~ 535 (955)
..+.+++..+|| |+.+|.
T Consensus 521 Ei~LgTVt~VdeAVeW-L~yTyl 542 (1230)
T KOG0952|consen 521 EISLGTVTNVDEAVEW-LKYTYL 542 (1230)
T ss_pred heeeceeecHHHHHHH-hhceeE
Confidence 234444433454 566653
No 14
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.9e-46 Score=437.51 Aligned_cols=319 Identities=19% Similarity=0.288 Sum_probs=259.9
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
........+||+ |+|+|.+||+.+.+|+|++++||||||||++|.+|++..+.. +.+++|++||++|+.|+.++++
T Consensus 14 ~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~ 93 (460)
T PRK11776 14 ALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIR 93 (460)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHH
Confidence 334445668998 999999999999999999999999999999999999998854 3479999999999999999998
Q ss_pred HhcC-----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHH
Q 002183 141 QEFK-----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208 (955)
Q Consensus 141 ~~~~-----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~ 208 (955)
.+.. .+..++|+.+. ...++|+|+||++|.+++.++...++++++||+||||.+.+.++...+..++.
T Consensus 94 ~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~ 173 (460)
T PRK11776 94 RLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIR 173 (460)
T ss_pred HHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHH
Confidence 7642 56678888754 45789999999999999988887899999999999999999999999999999
Q ss_pred hCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCc-ccceEEEeecCCCceEEeecccchhchhhHHHHHHHH
Q 002183 209 FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP-TPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTF 287 (955)
Q Consensus 209 ~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (955)
.+|+..|++++|||+++. +..+.......+..+....... ..+.++.+ .++..
T Consensus 174 ~~~~~~q~ll~SAT~~~~--~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~---------~~~~~--------------- 227 (460)
T PRK11776 174 QAPARRQTLLFSATYPEG--IAAISQRFQRDPVEVKVESTHDLPAIEQRFY---------EVSPD--------------- 227 (460)
T ss_pred hCCcccEEEEEEecCcHH--HHHHHHHhcCCCEEEEECcCCCCCCeeEEEE---------EeCcH---------------
Confidence 999999999999999854 4455555555565554433222 12333222 11111
Q ss_pred HHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 002183 288 LKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF 367 (955)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~ 367 (955)
..+..+...+......++||||+++..|+.++..|...++.
T Consensus 228 ---------------------------~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~------------ 268 (460)
T PRK11776 228 ---------------------------ERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFS------------ 268 (460)
T ss_pred ---------------------------HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCc------------
Confidence 11223344444445678999999999999999999875543
Q ss_pred HHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceec
Q 002183 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447 (955)
Q Consensus 368 ~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~ 447 (955)
+..+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++|| +|
T Consensus 269 ---------------------------v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI----~~ 317 (460)
T PRK11776 269 ---------------------------ALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI----NY 317 (460)
T ss_pred ---------------------------EEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE----Ee
Confidence 78999999999999999999999999999999999999999999999 88
Q ss_pred cCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 448 DGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 448 d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|. |.++..|+||+|||||.|.. |.++.++.+.
T Consensus 318 d~----p~~~~~yiqR~GRtGR~g~~--G~ai~l~~~~ 349 (460)
T PRK11776 318 EL----ARDPEVHVHRIGRTGRAGSK--GLALSLVAPE 349 (460)
T ss_pred cC----CCCHhHhhhhcccccCCCCc--ceEEEEEchh
Confidence 88 88999999999999999985 5555555443
No 15
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.4e-46 Score=440.80 Aligned_cols=328 Identities=19% Similarity=0.215 Sum_probs=254.9
Q ss_pred CCCCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh--------cCCeEEEEccChhh
Q 002183 61 ANPVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--------DKQRVIYTSPLKAL 131 (955)
Q Consensus 61 ~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~--------~~~~vl~l~PtkaL 131 (955)
.++..........+|+ |+|+|.+|||.+++|+|++++||||||||++|++|++..+. .++.+||++||++|
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreL 215 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTREL 215 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHH
Confidence 3444555566678998 99999999999999999999999999999999999887663 25689999999999
Q ss_pred HHHHHHHHHHhcC----CeeEEecccc-------cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCCh
Q 002183 132 SNQKYRELHQEFK----DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG 200 (955)
Q Consensus 132 a~Q~~~~l~~~~~----~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg 200 (955)
|.|+++.+..+.. .+..++|+.. +...++|+|+||++|.+++.++...++++++||+||||++.++++.
T Consensus 216 a~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~ 295 (545)
T PTZ00110 216 AEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFE 295 (545)
T ss_pred HHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchH
Confidence 9999999998765 3455677654 2346899999999999999988888999999999999999999999
Q ss_pred HHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcC-CCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhh
Q 002183 201 VVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHK-QPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDN 279 (955)
Q Consensus 201 ~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~-~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (955)
..+..++..+++..|++++|||+|.. +..+...+.. .++.+........... ...+.+..++...+
T Consensus 296 ~~i~~il~~~~~~~q~l~~SAT~p~~--v~~l~~~l~~~~~v~i~vg~~~l~~~~------~i~q~~~~~~~~~k----- 362 (545)
T PTZ00110 296 PQIRKIVSQIRPDRQTLMWSATWPKE--VQSLARDLCKEEPVHVNVGSLDLTACH------NIKQEVFVVEEHEK----- 362 (545)
T ss_pred HHHHHHHHhCCCCCeEEEEEeCCCHH--HHHHHHHHhccCCEEEEECCCccccCC------CeeEEEEEEechhH-----
Confidence 99999999999999999999999854 2233333322 3444433222110000 00011111111100
Q ss_pred HHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHH
Q 002183 280 FVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEE 359 (955)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e 359 (955)
...+..++..+.. ...++||||++++.|+.++..|...++.
T Consensus 363 ----------------------------------~~~L~~ll~~~~~-~~~k~LIF~~t~~~a~~l~~~L~~~g~~---- 403 (545)
T PTZ00110 363 ----------------------------------RGKLKMLLQRIMR-DGDKILIFVETKKGADFLTKELRLDGWP---- 403 (545)
T ss_pred ----------------------------------HHHHHHHHHHhcc-cCCeEEEEecChHHHHHHHHHHHHcCCc----
Confidence 0112223333222 4578999999999999999999765544
Q ss_pred HHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEE
Q 002183 360 KDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTV 439 (955)
Q Consensus 360 ~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~v 439 (955)
+..+||++++.+|+.+++.|++|.++|||||+++++|||+|++++
T Consensus 404 -----------------------------------~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~ 448 (545)
T PTZ00110 404 -----------------------------------ALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKY 448 (545)
T ss_pred -----------------------------------EEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCE
Confidence 578999999999999999999999999999999999999999999
Q ss_pred EEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 440 VFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 440 Vi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|| +||. |.++.+|+||+|||||.|.. |.++.+.++.
T Consensus 449 VI----~~d~----P~s~~~yvqRiGRtGR~G~~--G~ai~~~~~~ 484 (545)
T PTZ00110 449 VI----NFDF----PNQIEDYVHRIGRTGRAGAK--GASYTFLTPD 484 (545)
T ss_pred EE----EeCC----CCCHHHHHHHhcccccCCCC--ceEEEEECcc
Confidence 99 8998 89999999999999999985 5666665543
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.8e-46 Score=433.01 Aligned_cols=320 Identities=20% Similarity=0.242 Sum_probs=253.2
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---------CCeEEEEccChhhH
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---------KQRVIYTSPLKALS 132 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---------~~~vl~l~PtkaLa 132 (955)
+.........++|. |+|+|.+||+.+..|+|++++||||||||++|++|++..+.. ..++||++||++|+
T Consensus 9 ~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa 88 (456)
T PRK10590 9 SPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELA 88 (456)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHH
Confidence 33444455568998 999999999999999999999999999999999999988743 23799999999999
Q ss_pred HHHHHHHHHhcC----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChH
Q 002183 133 NQKYRELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGV 201 (955)
Q Consensus 133 ~Q~~~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~ 201 (955)
.|+++.+..++. .+..++|+.+. ...++|+|+||++|.+++......++++++|||||||++.++++..
T Consensus 89 ~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~ 168 (456)
T PRK10590 89 AQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIH 168 (456)
T ss_pred HHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHH
Confidence 999999998765 34557777654 3468999999999999998887789999999999999999999999
Q ss_pred HHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCC--cccceEEEeecCCCceEEeecccchhchhh
Q 002183 202 VWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR--PTPLQHYVFPVGGSGLYLVVDEKEQFREDN 279 (955)
Q Consensus 202 ~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (955)
.+..++..++...|++++|||+++. +..+...+...+..+...... ...+.+++. .++..
T Consensus 169 ~i~~il~~l~~~~q~l~~SAT~~~~--~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~---------~~~~~------- 230 (456)
T PRK10590 169 DIRRVLAKLPAKRQNLLFSATFSDD--IKALAEKLLHNPLEIEVARRNTASEQVTQHVH---------FVDKK------- 230 (456)
T ss_pred HHHHHHHhCCccCeEEEEeCCCcHH--HHHHHHHHcCCCeEEEEecccccccceeEEEE---------EcCHH-------
Confidence 9999999999999999999999864 223444344445444332211 111222111 11110
Q ss_pred HHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHH-HHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHH
Q 002183 280 FVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVK-MIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQE 358 (955)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~ 358 (955)
....++. .+......++||||+++..|+.++..|...++.
T Consensus 231 ------------------------------------~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~--- 271 (456)
T PRK10590 231 ------------------------------------RKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIR--- 271 (456)
T ss_pred ------------------------------------HHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCC---
Confidence 0011222 222334578999999999999999999775543
Q ss_pred HHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcE
Q 002183 359 EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKT 438 (955)
Q Consensus 359 e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~ 438 (955)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 272 ------------------------------------~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~ 315 (456)
T PRK10590 272 ------------------------------------SAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELP 315 (456)
T ss_pred ------------------------------------EEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCC
Confidence 67899999999999999999999999999999999999999999
Q ss_pred EEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeC
Q 002183 439 VVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVD 483 (955)
Q Consensus 439 vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~ 483 (955)
+|| +||. |.++.+|+||+|||||.|..+.+++++..+
T Consensus 316 ~VI----~~~~----P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~ 352 (456)
T PRK10590 316 HVV----NYEL----PNVPEDYVHRIGRTGRAAATGEALSLVCVD 352 (456)
T ss_pred EEE----EeCC----CCCHHHhhhhccccccCCCCeeEEEEecHH
Confidence 999 8998 899999999999999999866555555543
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.1e-46 Score=431.11 Aligned_cols=321 Identities=21% Similarity=0.210 Sum_probs=252.7
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh----------cCCeEEEEccChhh
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR----------DKQRVIYTSPLKAL 131 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~----------~~~~vl~l~PtkaL 131 (955)
+.........+||. |+|+|.+||+.+.+|+|++++||||||||++|++|++..+. .+.++||++||++|
T Consensus 16 ~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreL 95 (423)
T PRK04837 16 HPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTREL 95 (423)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHH
Confidence 33444445668998 99999999999999999999999999999999999988773 24689999999999
Q ss_pred HHHHHHHHHHhcC----CeeEEecccc-------cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCCh
Q 002183 132 SNQKYRELHQEFK----DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG 200 (955)
Q Consensus 132 a~Q~~~~l~~~~~----~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg 200 (955)
+.|+++.+..+.. .++.++|+.. +..+++|+|+||++|.+++..+...+.++++||+||||++.++++.
T Consensus 96 a~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~ 175 (423)
T PRK04837 96 AVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFI 175 (423)
T ss_pred HHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccH
Confidence 9999998887754 5677777754 2446899999999999999888888999999999999999999999
Q ss_pred HHHHHHHHhCCC--cceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCc--ccceEEEeecCCCceEEeecccchhc
Q 002183 201 VVWEESIIFLPP--AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP--TPLQHYVFPVGGSGLYLVVDEKEQFR 276 (955)
Q Consensus 201 ~~~~~ii~~l~~--~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~ 276 (955)
..+..++..++. ..+.+++|||++... ..........+..+....... ..+.+..+. ...
T Consensus 176 ~~i~~i~~~~~~~~~~~~~l~SAT~~~~~--~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~---------~~~----- 239 (423)
T PRK04837 176 KDIRWLFRRMPPANQRLNMLFSATLSYRV--RELAFEHMNNPEYVEVEPEQKTGHRIKEELFY---------PSN----- 239 (423)
T ss_pred HHHHHHHHhCCCccceeEEEEeccCCHHH--HHHHHHHCCCCEEEEEcCCCcCCCceeEEEEe---------CCH-----
Confidence 999888888874 567899999998542 233333344455444332211 111111110 000
Q ss_pred hhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCC
Q 002183 277 EDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNT 356 (955)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~ 356 (955)
......+...+......++||||+++..|+.++..|...++.
T Consensus 240 -------------------------------------~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~- 281 (423)
T PRK04837 240 -------------------------------------EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHR- 281 (423)
T ss_pred -------------------------------------HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCc-
Confidence 011122333333444578999999999999999999875543
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCC
Q 002183 357 QEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA 436 (955)
Q Consensus 357 ~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~ 436 (955)
+.++||+|++.+|..+++.|++|.++|||||+++++|||+|+
T Consensus 282 --------------------------------------v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~ 323 (423)
T PRK04837 282 --------------------------------------VGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPA 323 (423)
T ss_pred --------------------------------------EEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccc
Confidence 789999999999999999999999999999999999999999
Q ss_pred cEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 437 KTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 437 ~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
+++|| +||. |.++.+|+||+|||||.|.. |.++.+..+.
T Consensus 324 v~~VI----~~d~----P~s~~~yiqR~GR~gR~G~~--G~ai~~~~~~ 362 (423)
T PRK04837 324 VTHVF----NYDL----PDDCEDYVHRIGRTGRAGAS--GHSISLACEE 362 (423)
T ss_pred cCEEE----EeCC----CCchhheEeccccccCCCCC--eeEEEEeCHH
Confidence 99999 8999 89999999999999999985 5666665543
No 18
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-47 Score=377.76 Aligned_cols=327 Identities=20% Similarity=0.324 Sum_probs=269.8
Q ss_pred CCCchhhhcccCCCCCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEE
Q 002183 49 ALTKDEAIHGTFANPVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIY 124 (955)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~ 124 (955)
..+.++.+++.|+ |||+ |+.+|++|++.+.+|+||+++|..|+|||..|-+.+++.+.- ..++++
T Consensus 32 Mgl~edlLrgiY~-----------yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~li 100 (400)
T KOG0328|consen 32 MGLKEDLLRGIYA-----------YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALI 100 (400)
T ss_pred cCchHHHHHHHHH-----------hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEE
Confidence 4566666666665 9999 999999999999999999999999999999999888887753 467999
Q ss_pred EccChhhHHHHHHHHHHhcCC----eeEEecccccC-------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEcccc
Q 002183 125 TSPLKALSNQKYRELHQEFKD----VGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHY 193 (955)
Q Consensus 125 l~PtkaLa~Q~~~~l~~~~~~----vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~ 193 (955)
++|||+||.|+.+.+..++.. +..+.|+.++. -+.+++.+||+++.+|+.++....+.+.++|+||||.
T Consensus 101 lsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe 180 (400)
T KOG0328|consen 101 LSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE 180 (400)
T ss_pred ecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH
Confidence 999999999999999998873 33466776643 3678999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccc
Q 002183 194 MKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKE 273 (955)
Q Consensus 194 l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~ 273 (955)
|++.+++..+..++..+|++.|++++|||+| .++.+....+..+|+.+...... .+++ +-+.|++.-+++
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp--~eilemt~kfmtdpvrilvkrde-ltlE-------gIKqf~v~ve~E 250 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLP--HEILEMTEKFMTDPVRILVKRDE-LTLE-------GIKQFFVAVEKE 250 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCc--HHHHHHHHHhcCCceeEEEecCC-Cchh-------hhhhheeeechh
Confidence 9999999999999999999999999999998 56777788888778776554221 1222 111222222232
Q ss_pred hhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCC
Q 002183 274 QFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLD 353 (955)
Q Consensus 274 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~ 353 (955)
.|.-. .+++......-.+++|||+|++.++.+.+.+.+.+
T Consensus 251 ewKfd----------------------------------------tLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~n 290 (400)
T KOG0328|consen 251 EWKFD----------------------------------------TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN 290 (400)
T ss_pred hhhHh----------------------------------------HHHHHhhhhehheEEEEecccchhhHHHHHHHhhC
Confidence 33211 22333333345689999999999999999998866
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCC
Q 002183 354 FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLN 433 (955)
Q Consensus 354 ~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gid 433 (955)
+. |...||+|.+++|+.+...|++|..+||++|++.++|+|
T Consensus 291 ft---------------------------------------VssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiD 331 (400)
T KOG0328|consen 291 FT---------------------------------------VSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGID 331 (400)
T ss_pred ce---------------------------------------eeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCC
Confidence 65 778999999999999999999999999999999999999
Q ss_pred CCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 434 MPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 434 ip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
+|.+++|| +||. |.+.+.|+||+||.||.|+ +|++|-++.+.
T Consensus 332 v~qVslvi----NYDL----P~nre~YIHRIGRSGRFGR--kGvainFVk~~ 373 (400)
T KOG0328|consen 332 VQQVSLVI----NYDL----PNNRELYIHRIGRSGRFGR--KGVAINFVKSD 373 (400)
T ss_pred cceeEEEE----ecCC----CccHHHHhhhhccccccCC--cceEEEEecHH
Confidence 99999999 9999 8899999999999999999 57777776544
No 19
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-46 Score=397.67 Aligned_cols=338 Identities=18% Similarity=0.243 Sum_probs=273.6
Q ss_pred cCCCCCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc------CCeEEEEccChhh
Q 002183 59 TFANPVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD------KQRVIYTSPLKAL 131 (955)
Q Consensus 59 ~~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~------~~~vl~l~PtkaL 131 (955)
...+++..-......||. |+|+|..+||..+-|+|++.+|.||||||.+|.+|++..|.- -.||||++|||+|
T Consensus 185 ~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTREL 264 (691)
T KOG0338|consen 185 SMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTREL 264 (691)
T ss_pred hcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHH
Confidence 334455555566778999 999999999999999999999999999999999999998832 4699999999999
Q ss_pred HHHHHHHHHHhcC----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCC-ccCCccceEEEEccccCCCCCC
Q 002183 132 SNQKYRELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGS-EVLKEVAWVIFDEIHYMKDRER 199 (955)
Q Consensus 132 a~Q~~~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~~vIiDEaH~l~d~~r 199 (955)
+-|++...+++.. .+|+..||.++ ...++|+|+||++|.+++.+.. ..++++..+|+||||+|++.+|
T Consensus 265 aiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegF 344 (691)
T KOG0338|consen 265 AIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGF 344 (691)
T ss_pred HHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHH
Confidence 9999988887644 78999999875 3579999999999999987664 5589999999999999999999
Q ss_pred hHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccce---EEEeecCCCceEEeecccchhc
Q 002183 200 GVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQ---HYVFPVGGSGLYLVVDEKEQFR 276 (955)
Q Consensus 200 g~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~---~~~~~~~~~~~~~~~~~~~~~~ 276 (955)
...+.+++.++|++.|.++||||++ +++.+.+....++|+.++..+...++.. .|+- +.+.
T Consensus 345 ademnEii~lcpk~RQTmLFSATMt--eeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiR----------IR~~---- 408 (691)
T KOG0338|consen 345 ADEMNEIIRLCPKNRQTMLFSATMT--EEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIR----------IRPK---- 408 (691)
T ss_pred HHHHHHHHHhccccccceeehhhhH--HHHHHHHHhhcCCCeEEEeCCccccchhhhHHHhe----------eccc----
Confidence 9999999999999999999999998 4566777777788888887765444321 1110 0000
Q ss_pred hhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCC
Q 002183 277 EDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNT 356 (955)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~ 356 (955)
+ ......-+..++.. .-...+|||+.|++.|..+--.|.-+|+.
T Consensus 409 ------------------------------r--e~dRea~l~~l~~r---tf~~~~ivFv~tKk~AHRl~IllGLlgl~- 452 (691)
T KOG0338|consen 409 ------------------------------R--EGDREAMLASLITR---TFQDRTIVFVRTKKQAHRLRILLGLLGLK- 452 (691)
T ss_pred ------------------------------c--ccccHHHHHHHHHH---hcccceEEEEehHHHHHHHHHHHHHhhch-
Confidence 0 00111222333333 33567999999999999987777655544
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCC
Q 002183 357 QEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA 436 (955)
Q Consensus 357 ~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~ 436 (955)
++-+||.|++.+|...++.|+++++.|||||+++++|+||+.
T Consensus 453 --------------------------------------agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 453 --------------------------------------AGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred --------------------------------------hhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccc
Confidence 567899999999999999999999999999999999999999
Q ss_pred cEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhC
Q 002183 437 KTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLG 497 (955)
Q Consensus 437 ~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~ 497 (955)
+.+|| +|+. |.+...|+||+||+.|+|+. |.++.++.+. +...++.++..
T Consensus 495 V~tVI----Ny~m----P~t~e~Y~HRVGRTARAGRa--GrsVtlvgE~-dRkllK~iik~ 544 (691)
T KOG0338|consen 495 VQTVI----NYAM----PKTIEHYLHRVGRTARAGRA--GRSVTLVGES-DRKLLKEIIKS 544 (691)
T ss_pred eeEEE----eccC----chhHHHHHHHhhhhhhcccC--cceEEEeccc-cHHHHHHHHhh
Confidence 99999 9999 99999999999999999995 5666666555 56677777665
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.7e-45 Score=432.46 Aligned_cols=319 Identities=23% Similarity=0.242 Sum_probs=245.3
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh----------cCCeEEEEccChhh
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR----------DKQRVIYTSPLKAL 131 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~----------~~~~vl~l~PtkaL 131 (955)
+..........||. |+|+|.+||+.+..|+|++++||||||||++|++|++..+. .++++||++||++|
T Consensus 129 ~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreL 208 (518)
T PLN00206 129 PPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTREL 208 (518)
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHH
Confidence 33333444567998 99999999999999999999999999999999999987652 35789999999999
Q ss_pred HHHHHHHHHHhcC----CeeEEecccc-------cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCCh
Q 002183 132 SNQKYRELHQEFK----DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG 200 (955)
Q Consensus 132 a~Q~~~~l~~~~~----~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg 200 (955)
+.|+++.++.+.. .+..+.|+.. +..+++|+|+||++|.+++.+....++++++||+||||+|.++++.
T Consensus 209 a~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~ 288 (518)
T PLN00206 209 CVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFR 288 (518)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchH
Confidence 9999998887755 2334455443 3456899999999999999888888999999999999999999988
Q ss_pred HHHHHHHHhCCCcceEEEeccccCChH-HHHHHHhhhcCCCeEEEecC-CCccc-ceEEEeecCCCceEEeecccchhch
Q 002183 201 VVWEESIIFLPPAIKMVFLSATMSNAT-QFAEWICHLHKQPCHVVYTD-FRPTP-LQHYVFPVGGSGLYLVVDEKEQFRE 277 (955)
Q Consensus 201 ~~~~~ii~~l~~~~~~v~lSAT~~n~~-~~~~~l~~~~~~~~~v~~~~-~rp~p-l~~~~~~~~~~~~~~~~~~~~~~~~ 277 (955)
..+..++..++ ..|++++|||+++.. .++.++ ...+..+.... .++.. +.+. ...++...
T Consensus 289 ~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~---~~~~~~i~~~~~~~~~~~v~q~---------~~~~~~~~---- 351 (518)
T PLN00206 289 DQVMQIFQALS-QPQVLLFSATVSPEVEKFASSL---AKDIILISIGNPNRPNKAVKQL---------AIWVETKQ---- 351 (518)
T ss_pred HHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHh---CCCCEEEEeCCCCCCCcceeEE---------EEeccchh----
Confidence 88888888775 579999999998653 344433 33344333222 11111 1111 11111110
Q ss_pred hhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHc--CCCcEEEEEcChHHHHHHHHHhcc-CCC
Q 002183 278 DNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER--KFQPVIVFSFSRRECEQHAMSMSK-LDF 354 (955)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~IVF~~s~~~~~~la~~L~~-~~~ 354 (955)
....+...+... ...++||||+++..|+.++..|.. .++
T Consensus 352 --------------------------------------k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~ 393 (518)
T PLN00206 352 --------------------------------------KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGL 393 (518)
T ss_pred --------------------------------------HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCc
Confidence 111222222221 235899999999999999998864 222
Q ss_pred CCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCC
Q 002183 355 NTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNM 434 (955)
Q Consensus 355 ~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidi 434 (955)
.+..+||++++.+|..+++.|++|.++|||||+++++|||+
T Consensus 394 ---------------------------------------~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDi 434 (518)
T PLN00206 394 ---------------------------------------KALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDL 434 (518)
T ss_pred ---------------------------------------ceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCc
Confidence 26789999999999999999999999999999999999999
Q ss_pred CCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 435 PAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 435 p~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|++++|| +||. |.+..+|+||+|||||.|.. |.+++++++.
T Consensus 435 p~v~~VI----~~d~----P~s~~~yihRiGRaGR~g~~--G~ai~f~~~~ 475 (518)
T PLN00206 435 LRVRQVI----IFDM----PNTIKEYIHQIGRASRMGEK--GTAIVFVNEE 475 (518)
T ss_pred ccCCEEE----EeCC----CCCHHHHHHhccccccCCCC--eEEEEEEchh
Confidence 9999999 8998 89999999999999999984 6666666543
No 21
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-45 Score=390.25 Aligned_cols=321 Identities=23% Similarity=0.295 Sum_probs=267.3
Q ss_pred CCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc------C--CeEEEEccChhhHHH
Q 002183 64 VYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD------K--QRVIYTSPLKALSNQ 134 (955)
Q Consensus 64 ~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~------~--~~vl~l~PtkaLa~Q 134 (955)
.+..+.....||+ .||+|..+||.++.++||+|-|+||||||++|++|++..+.+ . .-++|++|||+||.|
T Consensus 15 ~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~Q 94 (567)
T KOG0345|consen 15 PWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQ 94 (567)
T ss_pred HHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHH
Confidence 4666677789999 999999999999999999999999999999999999999821 1 258999999999999
Q ss_pred HHHHHHHhcC-----CeeEEecccccC--------CCCCEEEEeHHHHHHHHhcCCccC--CccceEEEEccccCCCCCC
Q 002183 135 KYRELHQEFK-----DVGLMTGDVTLS--------PNASCLVMTTEILRGMLYRGSEVL--KEVAWVIFDEIHYMKDRER 199 (955)
Q Consensus 135 ~~~~l~~~~~-----~vg~~tGd~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l--~~l~~vIiDEaH~l~d~~r 199 (955)
+......+.. +.-+++|+.++. .++.|+|+||++|.+++.+....+ ++++++|+||||+++|.+|
T Consensus 95 I~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgF 174 (567)
T KOG0345|consen 95 IREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGF 174 (567)
T ss_pred HHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccH
Confidence 9887766544 467788887653 478999999999999999865544 4999999999999999999
Q ss_pred hHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCc--cc--ceEEEeecCCCceEEeecccchh
Q 002183 200 GVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP--TP--LQHYVFPVGGSGLYLVVDEKEQF 275 (955)
Q Consensus 200 g~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp--~p--l~~~~~~~~~~~~~~~~~~~~~~ 275 (955)
...++.++..||+..++=+||||.... ..+.......+|+.|.....+. +| +.. .|.++...
T Consensus 175 e~~~n~ILs~LPKQRRTGLFSATq~~~--v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~---------~Y~v~~a~--- 240 (567)
T KOG0345|consen 175 EASVNTILSFLPKQRRTGLFSATQTQE--VEDLARAGLRNPVRVSVKEKSKSATPSSLAL---------EYLVCEAD--- 240 (567)
T ss_pred HHHHHHHHHhcccccccccccchhhHH--HHHHHHhhccCceeeeecccccccCchhhcc---------eeeEecHH---
Confidence 999999999999999999999998754 4466666667788877766553 44 332 23333332
Q ss_pred chhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCC
Q 002183 276 REDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFN 355 (955)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~ 355 (955)
.....++..+......++|||.+|...++.....+....
T Consensus 241 ---------------------------------------eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l-- 279 (567)
T KOG0345|consen 241 ---------------------------------------EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL-- 279 (567)
T ss_pred ---------------------------------------HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHh--
Confidence 223456666776777899999999999999988876531
Q ss_pred CHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC
Q 002183 356 TQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP 435 (955)
Q Consensus 356 ~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip 435 (955)
....+..+||.|.+..|..+++.|++..-.||+|||++|||||+|
T Consensus 280 -----------------------------------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip 324 (567)
T KOG0345|consen 280 -----------------------------------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIP 324 (567)
T ss_pred -----------------------------------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCC
Confidence 123488999999999999999999998889999999999999999
Q ss_pred CcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEe
Q 002183 436 AKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMV 482 (955)
Q Consensus 436 ~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~ 482 (955)
++++|| .||+ |.++..|+||+||+||.|+.|.+++|+++
T Consensus 325 ~iD~Vv----Q~Dp----P~~~~~FvHR~GRTaR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 325 GIDLVV----QFDP----PKDPSSFVHRCGRTARAGREGNAIVFLNP 363 (567)
T ss_pred CceEEE----ecCC----CCChhHHHhhcchhhhccCccceEEEecc
Confidence 999999 9999 99999999999999999997666666665
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6e-45 Score=422.42 Aligned_cols=317 Identities=21% Similarity=0.230 Sum_probs=252.5
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc-------CCeEEEEccChhhHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-------KQRVIYTSPLKALSNQKY 136 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-------~~~vl~l~PtkaLa~Q~~ 136 (955)
.........||. |+++|.++++.+.+|+|++++||||+|||++|++|+++.+.. +.++||++||++|+.|++
T Consensus 11 ~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~ 90 (434)
T PRK11192 11 SLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVA 90 (434)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHH
Confidence 444455668998 999999999999999999999999999999999999988742 368999999999999999
Q ss_pred HHHHHhcC----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHH
Q 002183 137 RELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEE 205 (955)
Q Consensus 137 ~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ 205 (955)
+.+..+.. +++.++|+... ..+++|+|+||++|.+++..+...++++++|||||||++.+++++..++.
T Consensus 91 ~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~ 170 (434)
T PRK11192 91 DQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIET 170 (434)
T ss_pred HHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHH
Confidence 98888755 67788998753 45689999999999999988777789999999999999999999999999
Q ss_pred HHHhCCCcceEEEeccccCCh--HHHHHHHhhhcCCCeEEEecCCCccc--ceEEEeecCCCceEEeecccchhchhhHH
Q 002183 206 SIIFLPPAIKMVFLSATMSNA--TQFAEWICHLHKQPCHVVYTDFRPTP--LQHYVFPVGGSGLYLVVDEKEQFREDNFV 281 (955)
Q Consensus 206 ii~~l~~~~~~v~lSAT~~n~--~~~~~~l~~~~~~~~~v~~~~~rp~p--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (955)
+...++...|+++||||++.. .++..++ ...+..+.....+... +.++. ...+..
T Consensus 171 i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~i~~~~---------~~~~~~--------- 229 (434)
T PRK11192 171 IAAETRWRKQTLLFSATLEGDAVQDFAERL---LNDPVEVEAEPSRRERKKIHQWY---------YRADDL--------- 229 (434)
T ss_pred HHHhCccccEEEEEEeecCHHHHHHHHHHH---ccCCEEEEecCCcccccCceEEE---------EEeCCH---------
Confidence 998898889999999999742 3444444 3445444332221111 11111 111100
Q ss_pred HHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHH
Q 002183 282 KLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKD 361 (955)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~ 361 (955)
......+...+......++||||+++..|+.++..|...++.
T Consensus 230 --------------------------------~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~------ 271 (434)
T PRK11192 230 --------------------------------EHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGIN------ 271 (434)
T ss_pred --------------------------------HHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCC------
Confidence 001112222233335578999999999999999999775443
Q ss_pred HHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEE
Q 002183 362 TVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441 (955)
Q Consensus 362 ~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi 441 (955)
+..+||+|++.+|..++..|++|.++|||||+++++|||+|++++||
T Consensus 272 ---------------------------------~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 272 ---------------------------------CCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred ---------------------------------EEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 68999999999999999999999999999999999999999999999
Q ss_pred ecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEE
Q 002183 442 TAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIM 481 (955)
Q Consensus 442 ~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~ 481 (955)
+||. |.++..|+||+|||||.|..+.+++++.
T Consensus 319 ----~~d~----p~s~~~yiqr~GR~gR~g~~g~ai~l~~ 350 (434)
T PRK11192 319 ----NFDM----PRSADTYLHRIGRTGRAGRKGTAISLVE 350 (434)
T ss_pred ----EECC----CCCHHHHhhcccccccCCCCceEEEEec
Confidence 8998 8999999999999999998655555543
No 23
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.3e-45 Score=432.34 Aligned_cols=318 Identities=18% Similarity=0.199 Sum_probs=251.9
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc----------CCeEEEEccChhhHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----------KQRVIYTSPLKALSN 133 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~----------~~~vl~l~PtkaLa~ 133 (955)
........+||+ |+|+|.++|+.+++|+|++++||||||||++|++|++..+.. +.++||++||++|++
T Consensus 19 ~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~ 98 (572)
T PRK04537 19 ALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAI 98 (572)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHH
Confidence 344445668998 999999999999999999999999999999999999987732 368999999999999
Q ss_pred HHHHHHHHhcC----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcC-CccCCccceEEEEccccCCCCCChH
Q 002183 134 QKYRELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRG-SEVLKEVAWVIFDEIHYMKDRERGV 201 (955)
Q Consensus 134 Q~~~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~~vIiDEaH~l~d~~rg~ 201 (955)
|+++.+..++. .++.++|+... ...++|+|+||++|.+++.+. ...+..+++|||||||.+.+.++..
T Consensus 99 Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~ 178 (572)
T PRK04537 99 QIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIK 178 (572)
T ss_pred HHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHH
Confidence 99999988766 46678887753 346899999999999988765 3557889999999999999999999
Q ss_pred HHHHHHHhCCC--cceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCc--ccceEEEeecCCCceEEeecccchhch
Q 002183 202 VWEESIIFLPP--AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP--TPLQHYVFPVGGSGLYLVVDEKEQFRE 277 (955)
Q Consensus 202 ~~~~ii~~l~~--~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~ 277 (955)
.+..++..++. ..|++++|||+++. +.+........+..+....... ..+.+.++ ....
T Consensus 179 ~i~~il~~lp~~~~~q~ll~SATl~~~--v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~---------~~~~------ 241 (572)
T PRK04537 179 DIRFLLRRMPERGTRQTLLFSATLSHR--VLELAYEHMNEPEKLVVETETITAARVRQRIY---------FPAD------ 241 (572)
T ss_pred HHHHHHHhcccccCceEEEEeCCccHH--HHHHHHHHhcCCcEEEeccccccccceeEEEE---------ecCH------
Confidence 99999988886 68999999999854 3344444444444443332211 11122211 1100
Q ss_pred hhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCH
Q 002183 278 DNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQ 357 (955)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~ 357 (955)
...+..++..+......++||||+++..|+.++..|...++.
T Consensus 242 ------------------------------------~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~-- 283 (572)
T PRK04537 242 ------------------------------------EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYR-- 283 (572)
T ss_pred ------------------------------------HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCC--
Confidence 011223344444445678999999999999999999775543
Q ss_pred HHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCc
Q 002183 358 EEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAK 437 (955)
Q Consensus 358 ~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~ 437 (955)
+..+||+|++.+|+.+++.|++|.++|||||+++++|||+|++
T Consensus 284 -------------------------------------v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 284 -------------------------------------VGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred -------------------------------------EEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 7899999999999999999999999999999999999999999
Q ss_pred EEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCC
Q 002183 438 TVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 438 ~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~ 484 (955)
++|| +||. |.++.+|+||+|||||.|..+ .++.++.+
T Consensus 327 ~~VI----nyd~----P~s~~~yvqRiGRaGR~G~~G--~ai~~~~~ 363 (572)
T PRK04537 327 KYVY----NYDL----PFDAEDYVHRIGRTARLGEEG--DAISFACE 363 (572)
T ss_pred CEEE----EcCC----CCCHHHHhhhhcccccCCCCc--eEEEEecH
Confidence 9999 8998 999999999999999999964 55555443
No 24
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=7.2e-45 Score=431.42 Aligned_cols=319 Identities=21% Similarity=0.273 Sum_probs=257.1
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
........+||+ |+|+|.++|+.+..|+++|++||||||||++|.+|++..+.. ++++||++||++|+.|+++.+.
T Consensus 16 ~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~ 95 (629)
T PRK11634 16 PILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMT 95 (629)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHH
Confidence 334445568998 999999999999999999999999999999999999888743 4689999999999999999887
Q ss_pred HhcC-----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHH
Q 002183 141 QEFK-----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208 (955)
Q Consensus 141 ~~~~-----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~ 208 (955)
.+.. .+..++|+.+. ...++|+|+||+++.+++.++...++++++||+||||.|.++++...++.++.
T Consensus 96 ~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~ 175 (629)
T PRK11634 96 DFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 (629)
T ss_pred HHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHH
Confidence 7643 45567777643 35789999999999999998888899999999999999999999999999999
Q ss_pred hCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCc-cc-ceEEEeecCCCceEEeecccchhchhhHHHHHHH
Q 002183 209 FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP-TP-LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDT 286 (955)
Q Consensus 209 ~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp-~p-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (955)
.+|...|+++||||+|+.. ......+...+..+....... .+ +.+ .|+.+..
T Consensus 176 ~lp~~~q~llfSAT~p~~i--~~i~~~~l~~~~~i~i~~~~~~~~~i~q---------~~~~v~~--------------- 229 (629)
T PRK11634 176 QIPEGHQTALFSATMPEAI--RRITRRFMKEPQEVRIQSSVTTRPDISQ---------SYWTVWG--------------- 229 (629)
T ss_pred hCCCCCeEEEEEccCChhH--HHHHHHHcCCCeEEEccCccccCCceEE---------EEEEech---------------
Confidence 9999999999999998653 344444545554443322111 11 111 1111111
Q ss_pred HHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 002183 287 FLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366 (955)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~ 366 (955)
......+...+......++||||+|+..|+.++..|...++.
T Consensus 230 ---------------------------~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~----------- 271 (629)
T PRK11634 230 ---------------------------MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYN----------- 271 (629)
T ss_pred ---------------------------hhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCC-----------
Confidence 112234455555555678999999999999999999876654
Q ss_pred HHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEeccee
Q 002183 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446 (955)
Q Consensus 367 ~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~ 446 (955)
+..+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++|| +
T Consensus 272 ----------------------------~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI----~ 319 (629)
T PRK11634 272 ----------------------------SAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVV----N 319 (629)
T ss_pred ----------------------------EEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEE----E
Confidence 67899999999999999999999999999999999999999999999 8
Q ss_pred ccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 447 WDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 447 ~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
||. |.++..|+||+|||||.|+. |.+++++++.
T Consensus 320 ~d~----P~~~e~yvqRiGRtGRaGr~--G~ai~~v~~~ 352 (629)
T PRK11634 320 YDI----PMDSESYVHRIGRTGRAGRA--GRALLFVENR 352 (629)
T ss_pred eCC----CCCHHHHHHHhccccCCCCc--ceEEEEechH
Confidence 998 89999999999999999985 5666666543
No 25
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.3e-45 Score=392.17 Aligned_cols=333 Identities=21% Similarity=0.250 Sum_probs=271.0
Q ss_pred cccCCCCCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh-------cCCeEEEEccC
Q 002183 57 HGTFANPVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-------DKQRVIYTSPL 128 (955)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-------~~~~vl~l~Pt 128 (955)
+..+.++.......+.+||+ +|++|..+++.++.|+|+++.|.||+|||++|++|+.+.+. ++..++|++||
T Consensus 84 f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PT 163 (543)
T KOG0342|consen 84 FEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPT 163 (543)
T ss_pred hhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEeccc
Confidence 34445555667778889999 99999999999999999999999999999999999998873 46689999999
Q ss_pred hhhHHHHHHHHHHhcC-----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCc-cCCccceEEEEccccCC
Q 002183 129 KALSNQKYRELHQEFK-----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSE-VLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 129 kaLa~Q~~~~l~~~~~-----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~-~l~~l~~vIiDEaH~l~ 195 (955)
|+||.|++.+.+++.. .++++.|+... ...+.|+|+||++|.+++.+.+. .+++++++|+||||+++
T Consensus 164 RELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlL 243 (543)
T KOG0342|consen 164 RELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLL 243 (543)
T ss_pred HHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhh
Confidence 9999999999988754 57889998863 34899999999999999988764 45678899999999999
Q ss_pred CCCChHHHHHHHHhCCCcceEEEeccccCChH-HHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccch
Q 002183 196 DRERGVVWEESIIFLPPAIKMVFLSATMSNAT-QFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQ 274 (955)
Q Consensus 196 d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~-~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~ 274 (955)
|.+|...++.++..+|...|.+++|||.+... +++... ...++.++-..+....+-.. +.++-|++....
T Consensus 244 d~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~--L~~d~~~v~~~d~~~~~The-----~l~Qgyvv~~~~-- 314 (543)
T KOG0342|consen 244 DIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGA--LKRDPVFVNVDDGGERETHE-----RLEQGYVVAPSD-- 314 (543)
T ss_pred hcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHh--hcCCceEeecCCCCCcchhh-----cccceEEecccc--
Confidence 99999999999999999999999999998553 333222 22345555555544333221 123344443322
Q ss_pred hchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCC-CcEEEEEcChHHHHHHHHHhccCC
Q 002183 275 FREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKF-QPVIVFSFSRRECEQHAMSMSKLD 353 (955)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~IVF~~s~~~~~~la~~L~~~~ 353 (955)
..+..+...+.+... .++||||+|...+..++..|...+
T Consensus 315 ----------------------------------------~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~d 354 (543)
T KOG0342|consen 315 ----------------------------------------SRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYID 354 (543)
T ss_pred ----------------------------------------chHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcC
Confidence 123345555555543 789999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCC
Q 002183 354 FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLN 433 (955)
Q Consensus 354 ~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gid 433 (955)
++ |..+||++++..|..+...|++.+.-||||||+.|||+|
T Consensus 355 lp---------------------------------------v~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD 395 (543)
T KOG0342|consen 355 LP---------------------------------------VLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLD 395 (543)
T ss_pred Cc---------------------------------------hhhhhcCCcccccchHHHHHhhcccceEEecchhhccCC
Confidence 66 556899999999999999999999999999999999999
Q ss_pred CCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 434 MPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 434 ip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
+|++++|+ .||+ |.++.+|+||+||+||.|+.|.|+.++.+.+.
T Consensus 396 ~P~V~~Vv----Q~~~----P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El 439 (543)
T KOG0342|consen 396 IPDVDWVV----QYDP----PSDPEQYIHRVGRTAREGKEGKALLLLAPWEL 439 (543)
T ss_pred CCCceEEE----EeCC----CCCHHHHHHHhccccccCCCceEEEEeChhHH
Confidence 99999999 8999 99999999999999999997666666665544
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-43 Score=415.18 Aligned_cols=320 Identities=19% Similarity=0.221 Sum_probs=248.9
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc----------CCeEEEEccChhh
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----------KQRVIYTSPLKAL 131 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~----------~~~vl~l~PtkaL 131 (955)
+.........+||. |+++|.+||+.+.+|+|++++||||||||++|++|++..+.. +.++||++||++|
T Consensus 95 ~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreL 174 (475)
T PRK01297 95 APELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTREL 174 (475)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHH
Confidence 33444455568998 999999999999999999999999999999999999988743 3689999999999
Q ss_pred HHHHHHHHHHhcC----CeeEEeccccc--------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCC
Q 002183 132 SNQKYRELHQEFK----DVGLMTGDVTL--------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER 199 (955)
Q Consensus 132 a~Q~~~~l~~~~~----~vg~~tGd~~~--------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~r 199 (955)
+.|+++.++.+.. .+..++|+... ...++|+|+||++|..++.++...++++++|||||||.+.+.++
T Consensus 175 a~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~ 254 (475)
T PRK01297 175 VVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGF 254 (475)
T ss_pred HHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhccc
Confidence 9999999988764 45667787542 34689999999999999888888899999999999999999988
Q ss_pred hHHHHHHHHhCCC--cceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCc--ccceEEEeecCCCceEEeecccchh
Q 002183 200 GVVWEESIIFLPP--AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP--TPLQHYVFPVGGSGLYLVVDEKEQF 275 (955)
Q Consensus 200 g~~~~~ii~~l~~--~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~ 275 (955)
...+..++..++. ..|++++|||+++. +.+........+..+....... ..+.++++ .+...
T Consensus 255 ~~~l~~i~~~~~~~~~~q~i~~SAT~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------~~~~~--- 320 (475)
T PRK01297 255 IPQVRQIIRQTPRKEERQTLLFSATFTDD--VMNLAKQWTTDPAIVEIEPENVASDTVEQHVY---------AVAGS--- 320 (475)
T ss_pred HHHHHHHHHhCCCCCCceEEEEEeecCHH--HHHHHHHhccCCEEEEeccCcCCCCcccEEEE---------Eecch---
Confidence 8888888888764 57999999998743 2233333333344332221110 11111111 11100
Q ss_pred chhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCC
Q 002183 276 REDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFN 355 (955)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~ 355 (955)
.....+...+......++||||+++..|+.++..|...++.
T Consensus 321 ---------------------------------------~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~ 361 (475)
T PRK01297 321 ---------------------------------------DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGIN 361 (475)
T ss_pred ---------------------------------------hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 11112223333344568999999999999999998765443
Q ss_pred CHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC
Q 002183 356 TQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP 435 (955)
Q Consensus 356 ~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip 435 (955)
+..+||++++.+|..+++.|++|.++|||||+++++|||+|
T Consensus 362 ---------------------------------------~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 362 ---------------------------------------AAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred ---------------------------------------EEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 67899999999999999999999999999999999999999
Q ss_pred CcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCC
Q 002183 436 AKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 436 ~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~ 484 (955)
++++|| +||. |.+..+|+||+|||||.|.+ |.++++.++
T Consensus 403 ~v~~VI----~~~~----P~s~~~y~Qr~GRaGR~g~~--g~~i~~~~~ 441 (475)
T PRK01297 403 GISHVI----NFTL----PEDPDDYVHRIGRTGRAGAS--GVSISFAGE 441 (475)
T ss_pred CCCEEE----EeCC----CCCHHHHHHhhCccCCCCCC--ceEEEEecH
Confidence 999999 8888 89999999999999999986 555555544
No 27
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.1e-44 Score=388.80 Aligned_cols=333 Identities=22% Similarity=0.292 Sum_probs=271.8
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh------------cCCeEEEEccCh
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR------------DKQRVIYTSPLK 129 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~------------~~~~vl~l~Ptk 129 (955)
|...-.....-+|. |+|+|++|||..++++|+|..|.||||||++|.+|++..+. .|+.+++++|||
T Consensus 253 P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptR 332 (673)
T KOG0333|consen 253 PLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTR 332 (673)
T ss_pred CHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHH
Confidence 33344456677888 99999999999999999999999999999999999887662 378999999999
Q ss_pred hhHHHHHHHHHHhcCCee----EEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCC
Q 002183 130 ALSNQKYRELHQEFKDVG----LMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE 198 (955)
Q Consensus 130 aLa~Q~~~~l~~~~~~vg----~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~ 198 (955)
+|+.|+..+-.++....| -+.|+.+. ...++|+|+||++|.+.|.+....+.++.+||+|||+.|.|.+
T Consensus 333 eLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmg 412 (673)
T KOG0333|consen 333 ELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMG 412 (673)
T ss_pred HHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhccc
Confidence 999999998877665333 35566554 4579999999999999999988889999999999999999999
Q ss_pred ChHHHHHHHHhCCC-------------------------cceEEEeccccCChHHHHHHHhhhcCCCeEEEe-cCCCccc
Q 002183 199 RGVVWEESIIFLPP-------------------------AIKMVFLSATMSNATQFAEWICHLHKQPCHVVY-TDFRPTP 252 (955)
Q Consensus 199 rg~~~~~ii~~l~~-------------------------~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~-~~~rp~p 252 (955)
|.+.+..++..+|. -.|.++||||+|...+ .....+..+|+.+.. ...+|+|
T Consensus 413 fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ve--rlar~ylr~pv~vtig~~gk~~~ 490 (673)
T KOG0333|consen 413 FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVE--RLARSYLRRPVVVTIGSAGKPTP 490 (673)
T ss_pred ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHH--HHHHHHhhCCeEEEeccCCCCcc
Confidence 99999999987752 1699999999997643 666777777877644 4567777
Q ss_pred ceE-EEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCc
Q 002183 253 LQH-YVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQP 331 (955)
Q Consensus 253 l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 331 (955)
.-. .++ .+.. ...+..|+..+......|
T Consensus 491 rveQ~v~---------m~~e------------------------------------------d~k~kkL~eil~~~~~pp 519 (673)
T KOG0333|consen 491 RVEQKVE---------MVSE------------------------------------------DEKRKKLIEILESNFDPP 519 (673)
T ss_pred chheEEE---------Eecc------------------------------------------hHHHHHHHHHHHhCCCCC
Confidence 532 221 1111 122446667777666789
Q ss_pred EEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHH
Q 002183 332 VIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVE 411 (955)
Q Consensus 332 ~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~ 411 (955)
+|||+|+++.|+.+|..|.+.++. +..+|||-++++|+.++
T Consensus 520 iIIFvN~kk~~d~lAk~LeK~g~~---------------------------------------~~tlHg~k~qeQRe~aL 560 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILEKAGYK---------------------------------------VTTLHGGKSQEQRENAL 560 (673)
T ss_pred EEEEEechhhHHHHHHHHhhccce---------------------------------------EEEeeCCccHHHHHHHH
Confidence 999999999999999999987765 67899999999999999
Q ss_pred HHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHH
Q 002183 412 LLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTL 491 (955)
Q Consensus 412 ~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~ 491 (955)
..|++|...|||||+++++|||+|++++|| +||. +.+..+|+||+||+||+|+.|.+++|+...+..-...+
T Consensus 561 ~~fr~~t~dIlVaTDvAgRGIDIpnVSlVi----nydm----aksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydL 632 (673)
T KOG0333|consen 561 ADFREGTGDILVATDVAGRGIDIPNVSLVI----NYDM----AKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDL 632 (673)
T ss_pred HHHHhcCCCEEEEecccccCCCCCccceee----ecch----hhhHHHHHHHhccccccccCceeEEEeccchhHHHHHH
Confidence 999999999999999999999999999999 9999 88999999999999999997666666655443222344
Q ss_pred HHhH
Q 002183 492 KDMV 495 (955)
Q Consensus 492 ~~l~ 495 (955)
++.+
T Consensus 633 kq~l 636 (673)
T KOG0333|consen 633 KQAL 636 (673)
T ss_pred HHHH
Confidence 4443
No 28
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=7.1e-44 Score=431.13 Aligned_cols=338 Identities=18% Similarity=0.215 Sum_probs=251.5
Q ss_pred chhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccChhhHHHHHHHHHHh
Q 002183 66 NGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 66 ~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
........||+ |+++|.+||+.+.+|+|++++||||||||++|.+|++..+.+ +.++||++|||||++|+++.++++
T Consensus 25 l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l 104 (742)
T TIGR03817 25 VVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVREL 104 (742)
T ss_pred HHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHh
Confidence 33445667997 999999999999999999999999999999999999998854 568999999999999999999987
Q ss_pred cC---CeeEEeccccc------CCCCCEEEEeHHHHHHHHhcC----CccCCccceEEEEccccCCCCCChHHHHHHHHh
Q 002183 143 FK---DVGLMTGDVTL------SPNASCLVMTTEILRGMLYRG----SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (955)
Q Consensus 143 ~~---~vg~~tGd~~~------~~~~~IlV~Tpe~L~~~l~~~----~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~ 209 (955)
.. .++.++||.+. ..+++|+|+||++|...+... ...++++++||+||||.+.+ .||..+..++..
T Consensus 105 ~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~r 183 (742)
T TIGR03817 105 TLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRR 183 (742)
T ss_pred ccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHH
Confidence 52 56778898753 346899999999997543221 23478999999999999987 488776665543
Q ss_pred -------CCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHH
Q 002183 210 -------LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK 282 (955)
Q Consensus 210 -------l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (955)
.+.+.|++++|||++|..++++++. +.++.++..+..|....++.+.... ........+.
T Consensus 184 L~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~---g~~~~~i~~~~~~~~~~~~~~~~p~--~~~~~~~~~~-------- 250 (742)
T TIGR03817 184 LRRLCARYGASPVFVLASATTADPAAAASRLI---GAPVVAVTEDGSPRGARTVALWEPP--LTELTGENGA-------- 250 (742)
T ss_pred HHHHHHhcCCCCEEEEEecCCCCHHHHHHHHc---CCCeEEECCCCCCcCceEEEEecCC--cccccccccc--------
Confidence 3567899999999999988877754 3466666555555443332221110 0000000000
Q ss_pred HHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHH
Q 002183 283 LQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDT 362 (955)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~ 362 (955)
............++..+... ..++||||+|++.|+.++..|......
T Consensus 251 -------------------------~~r~~~~~~~~~~l~~l~~~-~~~~IVF~~sr~~ae~l~~~l~~~l~~------- 297 (742)
T TIGR03817 251 -------------------------PVRRSASAEAADLLADLVAE-GARTLTFVRSRRGAELVAAIARRLLGE------- 297 (742)
T ss_pred -------------------------ccccchHHHHHHHHHHHHHC-CCCEEEEcCCHHHHHHHHHHHHHHHHh-------
Confidence 00000011122344444433 479999999999999999988641000
Q ss_pred HHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEe
Q 002183 363 VEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 442 (955)
Q Consensus 363 i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~ 442 (955)
. ...+..++..||||+++.+|+.+++.|++|++++||||+++++|||+|++++||
T Consensus 298 --------------~----------~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI- 352 (742)
T TIGR03817 298 --------------V----------DPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVV- 352 (742)
T ss_pred --------------h----------ccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEE-
Confidence 0 001223578999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCC
Q 002183 443 AVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 443 ~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~ 484 (955)
+||. |.+..+|+||+|||||+|.+ |.++++..+
T Consensus 353 ---~~~~----P~s~~~y~qRiGRaGR~G~~--g~ai~v~~~ 385 (742)
T TIGR03817 353 ---IAGF----PGTRASLWQQAGRAGRRGQG--ALVVLVARD 385 (742)
T ss_pred ---EeCC----CCCHHHHHHhccccCCCCCC--cEEEEEeCC
Confidence 8888 89999999999999999985 667776653
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=8e-44 Score=409.91 Aligned_cols=318 Identities=20% Similarity=0.308 Sum_probs=249.7
Q ss_pred hhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh---cCCeEEEEccChhhHHHHHHHHHHhcC
Q 002183 69 MAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 69 ~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~---~~~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
....++|+ |+|+|.+||+.+.+|++++++||||||||++|++|++..+. ++.++||++|+++|++|+++.+...+.
T Consensus 42 ~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 121 (401)
T PTZ00424 42 GIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGD 121 (401)
T ss_pred HHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhh
Confidence 34557897 99999999999999999999999999999999999998875 467899999999999999998888765
Q ss_pred ----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCc
Q 002183 145 ----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA 213 (955)
Q Consensus 145 ----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~ 213 (955)
.++.+.|+... ...++|+|+||+++.+++.++...++++++||+||||++.+.+++..+.+++..++++
T Consensus 122 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~ 201 (401)
T PTZ00424 122 YLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPD 201 (401)
T ss_pred hcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCC
Confidence 34455666532 3457999999999999998887789999999999999999988888899999999999
Q ss_pred ceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhcc
Q 002183 214 IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIG 293 (955)
Q Consensus 214 ~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 293 (955)
.|++++|||+++. ..++.......+..+...... ..+. +....+...+ ...+
T Consensus 202 ~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~-~~~~------------------ 253 (401)
T PTZ00424 202 VQVALFSATMPNE--ILELTTKFMRDPKRILVKKDE-LTLE------GIRQFYVAVE-KEEW------------------ 253 (401)
T ss_pred cEEEEEEecCCHH--HHHHHHHHcCCCEEEEeCCCC-cccC------CceEEEEecC-hHHH------------------
Confidence 9999999999864 334544444444443322211 1110 0001111111 0000
Q ss_pred CCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhh
Q 002183 294 GRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDC 373 (955)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~ 373 (955)
....+...+......++||||++++.|+.++..|...++
T Consensus 254 ----------------------~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~------------------- 292 (401)
T PTZ00424 254 ----------------------KFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDF------------------- 292 (401)
T ss_pred ----------------------HHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCC-------------------
Confidence 011222223333456899999999999999998876433
Q ss_pred cccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCc
Q 002183 374 LNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHR 453 (955)
Q Consensus 374 l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~ 453 (955)
++..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++|| +||.
T Consensus 293 --------------------~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI----~~~~---- 344 (401)
T PTZ00424 293 --------------------TVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI----NYDL---- 344 (401)
T ss_pred --------------------cEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE----EECC----
Confidence 378999999999999999999999999999999999999999999999 8888
Q ss_pred ccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 454 YIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 454 ~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|.+..+|+||+|||||.|. .|.|+.++++.
T Consensus 345 p~s~~~y~qr~GRagR~g~--~G~~i~l~~~~ 374 (401)
T PTZ00424 345 PASPENYIHRIGRSGRFGR--KGVAINFVTPD 374 (401)
T ss_pred CCCHHHEeecccccccCCC--CceEEEEEcHH
Confidence 8899999999999999997 47777777554
No 30
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.2e-44 Score=366.51 Aligned_cols=351 Identities=18% Similarity=0.230 Sum_probs=270.6
Q ss_pred ccCCCCCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHH
Q 002183 58 GTFANPVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSN 133 (955)
Q Consensus 58 ~~~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~ 133 (955)
..+....|.-+-.+.++.. |+|+|..+||.++.|+|++.+|.||||||.+|.+||++.+.. |.-++|++||++|+-
T Consensus 10 ~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~ 89 (442)
T KOG0340|consen 10 SILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELAL 89 (442)
T ss_pred hhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHH
Confidence 3445566777777788877 999999999999999999999999999999999999999965 567999999999999
Q ss_pred HHHHHHHHhcC----CeeEEecccc-------cCCCCCEEEEeHHHHHHHHhcC----CccCCccceEEEEccccCCCCC
Q 002183 134 QKYRELHQEFK----DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRG----SEVLKEVAWVIFDEIHYMKDRE 198 (955)
Q Consensus 134 Q~~~~l~~~~~----~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~----~~~l~~l~~vIiDEaH~l~d~~ 198 (955)
|+.+.|...+. ++.++.|+.. +..+++++|+|||++.+.+..+ ...++++.++|+|||+.+.+..
T Consensus 90 QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~ 169 (442)
T KOG0340|consen 90 QIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC 169 (442)
T ss_pred HHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccc
Confidence 99999998876 5667888764 4568999999999999888765 3457899999999999999999
Q ss_pred ChHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCC-CeEEEec-CCCcccceEEEeecCCCceEEeecccchhc
Q 002183 199 RGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQ-PCHVVYT-DFRPTPLQHYVFPVGGSGLYLVVDEKEQFR 276 (955)
Q Consensus 199 rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~-~~~v~~~-~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~ 276 (955)
|...++-+...+|...|.++||||+.+.. .+..+.-... .++.... +.-+++-. + .+-|+.+...
T Consensus 170 f~d~L~~i~e~lP~~RQtLlfSATitd~i--~ql~~~~i~k~~a~~~e~~~~vstvet--L-----~q~yI~~~~~---- 236 (442)
T KOG0340|consen 170 FPDILEGIEECLPKPRQTLLFSATITDTI--KQLFGCPITKSIAFELEVIDGVSTVET--L-----YQGYILVSID---- 236 (442)
T ss_pred hhhHHhhhhccCCCccceEEEEeehhhHH--HHhhcCCcccccceEEeccCCCCchhh--h-----hhheeecchh----
Confidence 99999999999999999999999998542 1222211111 1111111 11111110 0 0111111111
Q ss_pred hhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCC
Q 002183 277 EDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNT 356 (955)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~ 356 (955)
....-+..++........+.++||+++...|+.++..|..+.+.
T Consensus 237 -----------------------------------vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r- 280 (442)
T KOG0340|consen 237 -----------------------------------VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVR- 280 (442)
T ss_pred -----------------------------------hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhcee-
Confidence 00122334455555545688999999999999999999876544
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCC
Q 002183 357 QEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA 436 (955)
Q Consensus 357 ~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~ 436 (955)
++.+||.|++.+|-..+.+|+++.++||+|||++++|+|+|.
T Consensus 281 --------------------------------------~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~ 322 (442)
T KOG0340|consen 281 --------------------------------------VVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPT 322 (442)
T ss_pred --------------------------------------eeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCc
Confidence 788999999999999999999999999999999999999999
Q ss_pred cEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCccc
Q 002183 437 KTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLV 503 (955)
Q Consensus 437 ~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~ 503 (955)
+..|+ +||. |.+|.+|+||+||++|+|+.|.+++|+...+-.-...+++-+..+.++.+
T Consensus 323 V~LVv----N~di----Pr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~ 381 (442)
T KOG0340|consen 323 VELVV----NHDI----PRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYN 381 (442)
T ss_pred eeEEE----ecCC----CCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccc
Confidence 99999 9999 99999999999999999998888888775443223344444555544443
No 31
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-43 Score=381.70 Aligned_cols=341 Identities=21% Similarity=0.213 Sum_probs=274.4
Q ss_pred cccCCCCCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc-------CCeEEEEccC
Q 002183 57 HGTFANPVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-------KQRVIYTSPL 128 (955)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-------~~~vl~l~Pt 128 (955)
+.+++.+.....-.+.-+|. ++.+|+++|+..+.|+|++.+|.||||||++|++|++++|-+ |--+||++||
T Consensus 71 F~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPT 150 (758)
T KOG0343|consen 71 FADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPT 150 (758)
T ss_pred HHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecch
Confidence 34444454555556667887 999999999999999999999999999999999999999843 5679999999
Q ss_pred hhhHHHHHHHHHHhcC----CeeEEecccccC------CCCCEEEEeHHHHHHHHhcCC-ccCCccceEEEEccccCCCC
Q 002183 129 KALSNQKYRELHQEFK----DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRGS-EVLKEVAWVIFDEIHYMKDR 197 (955)
Q Consensus 129 kaLa~Q~~~~l~~~~~----~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~~vIiDEaH~l~d~ 197 (955)
|+||.|+|..+.+.+. ..|++.|+.... .+.+|+||||++|+.++..+. ....++.++|+||||+++|+
T Consensus 151 RELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDM 230 (758)
T KOG0343|consen 151 RELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDM 230 (758)
T ss_pred HHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHH
Confidence 9999999999999876 689999987653 368999999999998886554 45678999999999999999
Q ss_pred CChHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCC----CcccceEEEeecCCCceEEeecccc
Q 002183 198 ERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDF----RPTPLQHYVFPVGGSGLYLVVDEKE 273 (955)
Q Consensus 198 ~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~----rp~pl~~~~~~~~~~~~~~~~~~~~ 273 (955)
+|...++.++..+|++.|+++||||..+. +++.......+|.+|..... -|..|++ .|+++...
T Consensus 231 GFk~tL~~Ii~~lP~~RQTLLFSATqt~s--vkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q---------~y~~v~l~- 298 (758)
T KOG0343|consen 231 GFKKTLNAIIENLPKKRQTLLFSATQTKS--VKDLARLSLKDPVYVSVHENAVAATPSNLQQ---------SYVIVPLE- 298 (758)
T ss_pred hHHHHHHHHHHhCChhheeeeeecccchh--HHHHHHhhcCCCcEEEEeccccccChhhhhh---------eEEEEehh-
Confidence 99999999999999999999999999855 34555555566766655422 2333443 33333322
Q ss_pred hhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCC
Q 002183 274 QFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLD 353 (955)
Q Consensus 274 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~ 353 (955)
..+..|...+...-..+.|||..|.+.+..++..++++.
T Consensus 299 -----------------------------------------~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlr 337 (758)
T KOG0343|consen 299 -----------------------------------------DKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLR 337 (758)
T ss_pred -----------------------------------------hHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcC
Confidence 233445556666666789999999999999999998754
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCC
Q 002183 354 FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLN 433 (955)
Q Consensus 354 ~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gid 433 (955)
... .+..+||+|++..|..+...|.+..--|||||++++||+|
T Consensus 338 pg~-------------------------------------~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLD 380 (758)
T KOG0343|consen 338 PGI-------------------------------------PLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLD 380 (758)
T ss_pred CCC-------------------------------------ceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCC
Confidence 432 2677899999999999999999999999999999999999
Q ss_pred CCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhC
Q 002183 434 MPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLG 497 (955)
Q Consensus 434 ip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~ 497 (955)
+|++++|| .+|. |-++..|+||+||++|.+.. |.++++..+..+...+.++-..
T Consensus 381 FpaVdwVi----Q~DC----Pedv~tYIHRvGRtAR~~~~--G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 381 FPAVDWVI----QVDC----PEDVDTYIHRVGRTARYKER--GESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred CcccceEE----EecC----chhHHHHHHHhhhhhcccCC--CceEEEEcchhHHHHHHHHHHc
Confidence 99999999 8888 99999999999999999884 5666666555345555555433
No 32
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-44 Score=365.46 Aligned_cols=337 Identities=20% Similarity=0.284 Sum_probs=279.9
Q ss_pred cCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHHHHHHHhcC---
Q 002183 72 TYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFK--- 144 (955)
Q Consensus 72 ~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~~~l~~~~~--- 144 (955)
..||+ |+|+|.++||..+.|+|+++-|..|+|||.+|.+|+++.+.. .-++++++|||+||-|..+..++...
T Consensus 102 e~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~ 181 (459)
T KOG0326|consen 102 EKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLG 181 (459)
T ss_pred HhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccC
Confidence 46899 999999999999999999999999999999999999999865 45789999999999999888887766
Q ss_pred -CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceE
Q 002183 145 -DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKM 216 (955)
Q Consensus 145 -~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~ 216 (955)
.+-..||+++. +...+++|+||+++.++..++-..+++...+|+||||.+++.+|+..++.++..+|+..|+
T Consensus 182 i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQi 261 (459)
T KOG0326|consen 182 IKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQI 261 (459)
T ss_pred eEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCcccee
Confidence 34457888875 4468999999999999999998889999999999999999999999999999999999999
Q ss_pred EEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCc
Q 002183 217 VFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRR 296 (955)
Q Consensus 217 v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (955)
+++|||+|.. +..|......+|..+-.-+. +-..+..+.|-.+++..+.
T Consensus 262 llySATFP~t--Vk~Fm~~~l~kPy~INLM~e--------Ltl~GvtQyYafV~e~qKv--------------------- 310 (459)
T KOG0326|consen 262 LLYSATFPLT--VKGFMDRHLKKPYEINLMEE--------LTLKGVTQYYAFVEERQKV--------------------- 310 (459)
T ss_pred eEEecccchh--HHHHHHHhccCcceeehhhh--------hhhcchhhheeeechhhhh---------------------
Confidence 9999999966 45777777766655432221 1112223344444433221
Q ss_pred cCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhccc
Q 002183 297 ENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376 (955)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~ 376 (955)
.-+-..+.+....++||||||...+|-+|..+.++|+..
T Consensus 311 ---------------------hCLntLfskLqINQsIIFCNS~~rVELLAkKITelGysc-------------------- 349 (459)
T KOG0326|consen 311 ---------------------HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSC-------------------- 349 (459)
T ss_pred ---------------------hhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchh--------------------
Confidence 111122223345689999999999999999999988773
Q ss_pred ccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccC
Q 002183 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIG 456 (955)
Q Consensus 377 ~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s 456 (955)
.++|+.|.++.|..|...|++|.++.|||||.+.+|||+++++||| +||. |.+
T Consensus 350 -------------------yyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI----NFDf----pk~ 402 (459)
T KOG0326|consen 350 -------------------YYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI----NFDF----PKN 402 (459)
T ss_pred -------------------hHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE----ecCC----CCC
Confidence 5789999999999999999999999999999999999999999999 9999 999
Q ss_pred HHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCccccccc
Q 002183 457 SGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFR 507 (955)
Q Consensus 457 ~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~f~ 507 (955)
++.|.||+||+||.|.-|.++.++.+.+......+++-+.....|+++...
T Consensus 403 aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 403 AETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred HHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 999999999999999987777778777777777777777777778876543
No 33
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.8e-42 Score=403.43 Aligned_cols=320 Identities=21% Similarity=0.280 Sum_probs=239.6
Q ss_pred hhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCee
Q 002183 69 MAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG 147 (955)
Q Consensus 69 ~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg 147 (955)
+...|||. |+|+|.+||+.+..|++++++||||+|||++|++|++. .++.+||++|+++|+.|+++.+......+.
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~ 79 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLKASGIPAT 79 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHHHcCCcEE
Confidence 45679998 99999999999999999999999999999999999765 377899999999999999999998766888
Q ss_pred EEeccccc-----------CCCCCEEEEeHHHHHHHH--hcCCccCCccceEEEEccccCCCCCCh--HHHHHH--HHhC
Q 002183 148 LMTGDVTL-----------SPNASCLVMTTEILRGML--YRGSEVLKEVAWVIFDEIHYMKDRERG--VVWEES--IIFL 210 (955)
Q Consensus 148 ~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l--~~~~~~l~~l~~vIiDEaH~l~d~~rg--~~~~~i--i~~l 210 (955)
.++|+... +...+|+++|||++.... ...-....++++|||||||++.+|++. ..+..+ +...
T Consensus 80 ~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~ 159 (470)
T TIGR00614 80 FLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQK 159 (470)
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHH
Confidence 88887642 346899999999975321 111113678999999999999988643 333332 2222
Q ss_pred CCcceEEEeccccCCh--HHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHH
Q 002183 211 PPAIKMVFLSATMSNA--TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFL 288 (955)
Q Consensus 211 ~~~~~~v~lSAT~~n~--~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 288 (955)
.+++++++||||+++. .++..+++. ....++..+.....+ ++.+....
T Consensus 160 ~~~~~~l~lTAT~~~~~~~di~~~l~l---~~~~~~~~s~~r~nl------------~~~v~~~~--------------- 209 (470)
T TIGR00614 160 FPNVPIMALTATASPSVREDILRQLNL---KNPQIFCTSFDRPNL------------YYEVRRKT--------------- 209 (470)
T ss_pred cCCCceEEEecCCCHHHHHHHHHHcCC---CCCcEEeCCCCCCCc------------EEEEEeCC---------------
Confidence 3578999999999865 244444432 122222222221111 11111110
Q ss_pred HhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHH-HcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 002183 289 KQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIM-ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF 367 (955)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~ 367 (955)
...+..+...+. ......+||||+|++.|+.++..|...++.
T Consensus 210 -------------------------~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~------------ 252 (470)
T TIGR00614 210 -------------------------PKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIA------------ 252 (470)
T ss_pred -------------------------ccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCC------------
Confidence 012233444444 234456699999999999999999876544
Q ss_pred HHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceec
Q 002183 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447 (955)
Q Consensus 368 ~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~ 447 (955)
++.+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++|| +|
T Consensus 253 ---------------------------~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI----~~ 301 (470)
T TIGR00614 253 ---------------------------AGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVI----HY 301 (470)
T ss_pred ---------------------------eeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEE----Ee
Confidence 68899999999999999999999999999999999999999999999 88
Q ss_pred cCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHh
Q 002183 448 DGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVL 496 (955)
Q Consensus 448 d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~ 496 (955)
|. |.++.+|+||+|||||.|.. |.|+++++.. +...+++++.
T Consensus 302 ~~----P~s~~~y~Qr~GRaGR~G~~--~~~~~~~~~~-d~~~~~~~~~ 343 (470)
T TIGR00614 302 SL----PKSMESYYQESGRAGRDGLP--SECHLFYAPA-DINRLRRLLM 343 (470)
T ss_pred CC----CCCHHHHHhhhcCcCCCCCC--ceEEEEechh-HHHHHHHHHh
Confidence 88 89999999999999999984 6677776554 4455555554
No 34
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5e-42 Score=423.36 Aligned_cols=377 Identities=24% Similarity=0.329 Sum_probs=263.2
Q ss_pred CCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh---------cCCeEEEEccChhhHHHHHHHHHH--
Q 002183 74 SFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---------DKQRVIYTSPLKALSNQKYRELHQ-- 141 (955)
Q Consensus 74 ~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~---------~~~~vl~l~PtkaLa~Q~~~~l~~-- 141 (955)
+|. |+|+|.+|++.+.+|+|++++||||||||++|.+|++..+. ++.++||++|+|||++|+++.+.+
T Consensus 29 ~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l 108 (876)
T PRK13767 29 KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPL 108 (876)
T ss_pred ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHH
Confidence 455 99999999999999999999999999999999999988763 245799999999999999986653
Q ss_pred -----hc--------C-CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCC--ccCCccceEEEEccccCCCCC
Q 002183 142 -----EF--------K-DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGS--EVLKEVAWVIFDEIHYMKDRE 198 (955)
Q Consensus 142 -----~~--------~-~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~--~~l~~l~~vIiDEaH~l~d~~ 198 (955)
.+ + .+++.+||++. ...++|+|+|||+|..++.+.. ..++++++||+||||.+.+..
T Consensus 109 ~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~ 188 (876)
T PRK13767 109 TEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENK 188 (876)
T ss_pred HHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCc
Confidence 21 1 46788999863 2368999999999987775442 357899999999999999989
Q ss_pred ChHHHHHHHHh----CCCcceEEEeccccCChHHHHHHHhhhc----CCCeEEEecCCCcccceEEEeecCCCceEEeec
Q 002183 199 RGVVWEESIIF----LPPAIKMVFLSATMSNATQFAEWICHLH----KQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVD 270 (955)
Q Consensus 199 rg~~~~~ii~~----l~~~~~~v~lSAT~~n~~~~~~~l~~~~----~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~ 270 (955)
||..++..+.. .+...|++++|||++|..+++.|+.... ..++.++...+.. +....+... ...+.. .
T Consensus 189 RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k-~~~i~v~~p-~~~l~~--~ 264 (876)
T PRK13767 189 RGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVK-PFDIKVISP-VDDLIH--T 264 (876)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCc-cceEEEecc-Cccccc--c
Confidence 99887665543 3467899999999999999999997642 2233333222111 111100000 000000 0
Q ss_pred ccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhc
Q 002183 271 EKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMS 350 (955)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~ 350 (955)
... .....+...+..+.. ...++||||+|++.|+.++..|.
T Consensus 265 ~~~--------------------------------------~~~~~l~~~L~~~i~-~~~~~LVF~nTr~~ae~la~~L~ 305 (876)
T PRK13767 265 PAE--------------------------------------EISEALYETLHELIK-EHRTTLIFTNTRSGAERVLYNLR 305 (876)
T ss_pred ccc--------------------------------------hhHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHH
Confidence 000 000111222222222 34689999999999999999986
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccc
Q 002183 351 KLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAM 430 (955)
Q Consensus 351 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~ 430 (955)
..... .....++++|||+|++.+|..+++.|++|.++|||||+++++
T Consensus 306 ~~~~~---------------------------------~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~ 352 (876)
T PRK13767 306 KRFPE---------------------------------EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLEL 352 (876)
T ss_pred Hhchh---------------------------------hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHh
Confidence 52110 012246999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCC-CCCceEEEEEeCCc-ccHH-HHHHhHhCCCCcccccc-
Q 002183 431 GLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRG-KDDRGICIIMVDEQ-MEMN-TLKDMVLGKPAPLVSTF- 506 (955)
Q Consensus 431 Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G-~~~~g~~ii~~~~~-~~~~-~~~~l~~~~~~~l~s~f- 506 (955)
|||+|++++|| .|+. |.++.+|+||+|||||++ ..+.|.++....+. .+.. ..+....+..+++....
T Consensus 353 GIDip~Vd~VI----~~~~----P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~ 424 (876)
T PRK13767 353 GIDIGYIDLVV----LLGS----PKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKN 424 (876)
T ss_pred cCCCCCCcEEE----EeCC----CCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999 7887 889999999999999974 44578877754332 1211 34556677777654332
Q ss_pred --cCcHHHHHHhhhcccch-hhHHHHHHhhH
Q 002183 507 --RLSYYSILNLMSRAEGQ-FTAEHVIKNSF 534 (955)
Q Consensus 507 --~~~~~~il~ll~~~~~~-~~~~~~l~~sf 534 (955)
..-.+.++.+....+.. .+.-+.+.++|
T Consensus 425 ~~dvl~q~i~~~~~~~~~~~~~~~~~~~~~~ 455 (876)
T PRK13767 425 PLDVLAQHIVGMAIERPWDIEEAYNIVRRAY 455 (876)
T ss_pred cHHHHHHHHHHHHHcCCCCHHHHHHHHhccC
Confidence 22234444443333333 12334455544
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.3e-42 Score=411.03 Aligned_cols=322 Identities=21% Similarity=0.259 Sum_probs=240.0
Q ss_pred hhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCC
Q 002183 67 GEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (955)
Q Consensus 67 ~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~ 145 (955)
......|||. |+|+|.++|++++.|+|+++++|||+|||++|++|++.. ++.+||++|+++|+.++...+....-.
T Consensus 450 ~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---~GiTLVISPLiSLmqDQV~~L~~~GI~ 526 (1195)
T PLN03137 450 VNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMNLLQANIP 526 (1195)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---CCcEEEEeCHHHHHHHHHHHHHhCCCe
Confidence 3456678998 999999999999999999999999999999999998754 678999999999999888888776667
Q ss_pred eeEEeccccc-------------CCCCCEEEEeHHHHHH--HHhcC---CccCCccceEEEEccccCCCCC--ChHHHHH
Q 002183 146 VGLMTGDVTL-------------SPNASCLVMTTEILRG--MLYRG---SEVLKEVAWVIFDEIHYMKDRE--RGVVWEE 205 (955)
Q Consensus 146 vg~~tGd~~~-------------~~~~~IlV~Tpe~L~~--~l~~~---~~~l~~l~~vIiDEaH~l~d~~--rg~~~~~ 205 (955)
+..++|+... ....+|+|+|||+|.. .+.+. ......+++|||||||++.+|+ |.+.+..
T Consensus 527 Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~ 606 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQG 606 (1195)
T ss_pred EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHH
Confidence 7777776542 1468999999999852 11111 1123458999999999999986 4455544
Q ss_pred H--HHhCCCcceEEEeccccCCh--HHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHH
Q 002183 206 S--IIFLPPAIKMVFLSATMSNA--TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFV 281 (955)
Q Consensus 206 i--i~~l~~~~~~v~lSAT~~n~--~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (955)
+ +....+.+++++||||.+.. .++...++ ...+.++...+....+.. .+..+..
T Consensus 607 L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~---l~~~~vfr~Sf~RpNL~y------------~Vv~k~k------- 664 (1195)
T PLN03137 607 LGILKQKFPNIPVLALTATATASVKEDVVQALG---LVNCVVFRQSFNRPNLWY------------SVVPKTK------- 664 (1195)
T ss_pred HHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcC---CCCcEEeecccCccceEE------------EEeccch-------
Confidence 3 33334578999999999744 34444443 223334333332222211 1111100
Q ss_pred HHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHc-CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHH
Q 002183 282 KLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360 (955)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~ 360 (955)
..+..+...+... ...+.||||.|++.|+.++..|...++.
T Consensus 665 ---------------------------------k~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gik----- 706 (1195)
T PLN03137 665 ---------------------------------KCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHK----- 706 (1195)
T ss_pred ---------------------------------hHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCC-----
Confidence 0111233333322 2457899999999999999999876654
Q ss_pred HHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEE
Q 002183 361 DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440 (955)
Q Consensus 361 ~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vV 440 (955)
+.+|||||++.+|+.+++.|.+|.++|||||++|+||||+|++++|
T Consensus 707 ----------------------------------a~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~V 752 (1195)
T PLN03137 707 ----------------------------------AAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFV 752 (1195)
T ss_pred ----------------------------------eeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEE
Confidence 6899999999999999999999999999999999999999999999
Q ss_pred EecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHh
Q 002183 441 FTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVL 496 (955)
Q Consensus 441 i~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~ 496 (955)
| +||. |.+.+.|+||+|||||.|. .|.|+++++.. +...++.++.
T Consensus 753 I----Hydl----PkSiEsYyQriGRAGRDG~--~g~cILlys~~-D~~~~~~lI~ 797 (1195)
T PLN03137 753 I----HHSL----PKSIEGYHQECGRAGRDGQ--RSSCVLYYSYS-DYIRVKHMIS 797 (1195)
T ss_pred E----EcCC----CCCHHHHHhhhcccCCCCC--CceEEEEecHH-HHHHHHHHHh
Confidence 9 8999 9999999999999999998 57888887654 4444555543
No 36
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-43 Score=364.98 Aligned_cols=318 Identities=20% Similarity=0.249 Sum_probs=256.7
Q ss_pred hhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHH---------hcCCeEEEEccChhhHHHHHHHH
Q 002183 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF---------RDKQRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l---------~~~~~vl~l~PtkaLa~Q~~~~l 139 (955)
.++.||+ |+|+|.+|||.+++|.|++.+|.||+|||++|++|-...+ ..++.+|+++||++|+.|+.-+.
T Consensus 235 IkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~ 314 (629)
T KOG0336|consen 235 IKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEV 314 (629)
T ss_pred HHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHH
Confidence 4567999 9999999999999999999999999999999999865544 24678999999999999998888
Q ss_pred HHhcC----CeeEEecccc------cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh
Q 002183 140 HQEFK----DVGLMTGDVT------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (955)
Q Consensus 140 ~~~~~----~vg~~tGd~~------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~ 209 (955)
+++-- .+.+..|+.. +....+|+|+||++|.++.+.+...+..+.|+|+||||+|+|++|.+.+..++.-
T Consensus 315 ~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilld 394 (629)
T KOG0336|consen 315 KKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLD 394 (629)
T ss_pred hHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhh
Confidence 76532 3444444331 3457899999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHH
Q 002183 210 LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLK 289 (955)
Q Consensus 210 l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 289 (955)
..++.|+++.|||+|.. +......+.+.|+.++..+..-+.... ..+.+++.++...+
T Consensus 395 iRPDRqtvmTSATWP~~--VrrLa~sY~Kep~~v~vGsLdL~a~~s------VkQ~i~v~~d~~k~-------------- 452 (629)
T KOG0336|consen 395 IRPDRQTVMTSATWPEG--VRRLAQSYLKEPMIVYVGSLDLVAVKS------VKQNIIVTTDSEKL-------------- 452 (629)
T ss_pred cCCcceeeeecccCchH--HHHHHHHhhhCceEEEecccceeeeee------eeeeEEecccHHHH--------------
Confidence 99999999999999965 345666677778888777665443321 12233333332222
Q ss_pred hhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 002183 290 QKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF 367 (955)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~ 367 (955)
.++..+.+ ....++||||.++..++.+...+.-.++.+
T Consensus 453 -----------------------------~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~----------- 492 (629)
T KOG0336|consen 453 -----------------------------EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISS----------- 492 (629)
T ss_pred -----------------------------HHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccch-----------
Confidence 12222221 134689999999999888887776555543
Q ss_pred HHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceec
Q 002183 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447 (955)
Q Consensus 368 ~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~ 447 (955)
..+||+-.+.+|+..++.|++|.++|||||+++++|+|+|++++|+ +|
T Consensus 493 ----------------------------q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~----Ny 540 (629)
T KOG0336|consen 493 ----------------------------QSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVY----NY 540 (629)
T ss_pred ----------------------------hhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceee----cc
Confidence 4689999999999999999999999999999999999999999999 99
Q ss_pred cCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 448 DGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 448 d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|. |.+.++|+||+||+||+|+.|.++.++...+.
T Consensus 541 DF----P~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 541 DF----PRNIEEYVHRVGRTGRAGRTGTSISFLTRNDW 574 (629)
T ss_pred CC----CccHHHHHHHhcccccCCCCcceEEEEehhhH
Confidence 99 99999999999999999997777777665543
No 37
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-43 Score=382.47 Aligned_cols=445 Identities=18% Similarity=0.207 Sum_probs=303.4
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcC-CcEEEEcCCCCchHHHHHHHHHHHHh--------------cCCe--EEE
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERN-ESVLVSAHTSAGKTAVAEYAIAMAFR--------------DKQR--VIY 124 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g-~~vlv~apTGsGKTl~~~~~i~~~l~--------------~~~~--vl~ 124 (955)
|...-......||. |+++|...+|.+..| .|++..|.||||||++|.+||+..+. .+.+ .||
T Consensus 189 p~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV 268 (731)
T KOG0347|consen 189 PMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALV 268 (731)
T ss_pred CHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEE
Confidence 33444556678998 999999999998888 89999999999999999999998441 2344 999
Q ss_pred EccChhhHHHHHHHHHHhcC----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCc---cCCccceEEEEc
Q 002183 125 TSPLKALSNQKYRELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSE---VLKEVAWVIFDE 190 (955)
Q Consensus 125 l~PtkaLa~Q~~~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~---~l~~l~~vIiDE 190 (955)
++|||+||.|+...|..... .+..++||.++ +..++|+|+||++|+.++..+.. .++++.++|+||
T Consensus 269 ~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDE 348 (731)
T KOG0347|consen 269 VTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDE 348 (731)
T ss_pred ecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEcc
Confidence 99999999999999998766 45668999864 55899999999999999976643 467889999999
Q ss_pred cccCCCCCChHHHHHHHHhCC-----CcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCce
Q 002183 191 IHYMKDRERGVVWEESIIFLP-----PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGL 265 (955)
Q Consensus 191 aH~l~d~~rg~~~~~ii~~l~-----~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~ 265 (955)
+|+|...++...+..++.+|. ...|++.||||+.-..+ .-+...+.....- ..-..++++.+...+..+-
T Consensus 349 aDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~--~~~~~~~k~~~k~---~~~~~kiq~Lmk~ig~~~k 423 (731)
T KOG0347|consen 349 ADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQ--QPLSSSRKKKDKE---DELNAKIQHLMKKIGFRGK 423 (731)
T ss_pred HHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhc--ChhHHhhhccchh---hhhhHHHHHHHHHhCccCC
Confidence 999999988888888888775 46799999999862211 1111111000000 0000011111000000000
Q ss_pred EEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHH
Q 002183 266 YLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQH 345 (955)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l 345 (955)
-.++|... -......+.+....++. ...=..+...+. .-++++|||||+...+..+
T Consensus 424 pkiiD~t~------q~~ta~~l~Es~I~C~~-----------------~eKD~ylyYfl~-ryPGrTlVF~NsId~vKRL 479 (731)
T KOG0347|consen 424 PKIIDLTP------QSATASTLTESLIECPP-----------------LEKDLYLYYFLT-RYPGRTLVFCNSIDCVKRL 479 (731)
T ss_pred CeeEecCc------chhHHHHHHHHhhcCCc-----------------cccceeEEEEEe-ecCCceEEEechHHHHHHH
Confidence 00111100 00111122222222211 000001111111 2358899999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEc
Q 002183 346 AMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFAT 425 (955)
Q Consensus 346 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT 425 (955)
+..|..++.+. ..+|+.|.+.+|...++.|++..-.||+||
T Consensus 480 t~~L~~L~i~p---------------------------------------~~LHA~M~QKqRLknLEkF~~~~~~VLiaT 520 (731)
T KOG0347|consen 480 TVLLNNLDIPP---------------------------------------LPLHASMIQKQRLKNLEKFKQSPSGVLIAT 520 (731)
T ss_pred HHHHhhcCCCC---------------------------------------chhhHHHHHHHHHHhHHHHhcCCCeEEEee
Confidence 99999887764 468999999999999999999999999999
Q ss_pred ccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhH---hCC-CCc
Q 002183 426 ETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMV---LGK-PAP 501 (955)
Q Consensus 426 ~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~---~~~-~~~ 501 (955)
|++|||+|||.+.+|| +|.. |.+.+-|+||+||++|++. .|+++++|.+. +...+.++- ... ..|
T Consensus 521 DVAARGLDIp~V~HVI----HYqV----PrtseiYVHRSGRTARA~~--~Gvsvml~~P~-e~~~~~KL~ktL~k~~dlp 589 (731)
T KOG0347|consen 521 DVAARGLDIPGVQHVI----HYQV----PRTSEIYVHRSGRTARANS--EGVSVMLCGPQ-EVGPLKKLCKTLKKKEDLP 589 (731)
T ss_pred hhhhccCCCCCcceEE----Eeec----CCccceeEecccccccccC--CCeEEEEeChH-HhHHHHHHHHHHhhccCCC
Confidence 9999999999999999 8888 9999999999999999998 58888888776 344444432 222 223
Q ss_pred ccccccCcHHHHHHhhhcccchhhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHhccccCC----hhhHH--HHHHHH
Q 002183 502 LVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASG----EAEVA--EYHKLK 575 (955)
Q Consensus 502 l~s~f~~~~~~il~ll~~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~y~~~~ 575 (955)
+ |++ ..-+++.++..-.- +.++-+..|..++......|+++..+++.-+++...-.. ..++. +-...+
T Consensus 590 i---fPv-~~~~m~~lkeRvrL--A~ei~~~e~k~~~v~~~~sWlkkaA~el~id~d~d~d~~~~~~~e~~~~me~~~nk 663 (731)
T KOG0347|consen 590 I---FPV-ETDIMDALKERVRL--AREIDKLEIKSKRVRKEESWLKKAADELGIDVDEDEDDIGKSNSETFLKMEKRRNK 663 (731)
T ss_pred c---eec-cHHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhHHHHHHHHHHhCCccccccccccccccchhHHHHHHHHH
Confidence 3 555 44456665433322 556777778888888899999999988887765543211 11111 122334
Q ss_pred HHHHHHHHHHHHHhcCc
Q 002183 576 LDIAQLEKKLMSEITRP 592 (955)
Q Consensus 576 ~~~~~~~~~~~~~~~~~ 592 (955)
.+...++.++..++.+|
T Consensus 664 ~qv~~lRaeL~~lL~~p 680 (731)
T KOG0347|consen 664 KQVKALRAELNELLSQP 680 (731)
T ss_pred HHHHHHHHHHHhhcccc
Confidence 45556677777666654
No 38
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-42 Score=373.37 Aligned_cols=376 Identities=18% Similarity=0.261 Sum_probs=260.7
Q ss_pred hcccCCCCCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh---------cCCeEEEE
Q 002183 56 IHGTFANPVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---------DKQRVIYT 125 (955)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~---------~~~~vl~l 125 (955)
+......+.+...+...+++. ||.+|+++||.+++|+|++|-|+||||||++|++|+.+.|. .|.-+||+
T Consensus 138 f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVi 217 (708)
T KOG0348|consen 138 FASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVI 217 (708)
T ss_pred chhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEE
Confidence 344444566788888999998 99999999999999999999999999999999999999883 36789999
Q ss_pred ccChhhHHHHHHHHHHhcCCe-----eEEecccc-------cCCCCCEEEEeHHHHHHHHhcCC-ccCCccceEEEEccc
Q 002183 126 SPLKALSNQKYRELHQEFKDV-----GLMTGDVT-------LSPNASCLVMTTEILRGMLYRGS-EVLKEVAWVIFDEIH 192 (955)
Q Consensus 126 ~PtkaLa~Q~~~~l~~~~~~v-----g~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~~vIiDEaH 192 (955)
+|||+||.|+|+.+.++..+. |.+.||-. +..+.+|+|+||++|.+.|.+.. ..+..+.|||+||+|
T Consensus 218 vPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD 297 (708)
T KOG0348|consen 218 VPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD 297 (708)
T ss_pred echHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh
Confidence 999999999999999987743 44445432 34578999999999999998754 457889999999999
Q ss_pred cCCCCCChHHHHHHHHhC-------------CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEee
Q 002183 193 YMKDRERGVVWEESIIFL-------------PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFP 259 (955)
Q Consensus 193 ~l~d~~rg~~~~~ii~~l-------------~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~ 259 (955)
++.+.+|+..+..++..+ |+..|-+++|||+.+.. .+.-+....+|+++- .+.....+. +
T Consensus 298 rlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V--~rLa~~sLkDpv~I~-ld~s~~~~~----p 370 (708)
T KOG0348|consen 298 RLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGV--NRLADLSLKDPVYIS-LDKSHSQLN----P 370 (708)
T ss_pred HHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHH--HHHhhccccCceeee-ccchhhhcC----c
Confidence 999999999999988754 33578999999998553 344444445566655 222111110 0
Q ss_pred cCCCceEEeecc--cchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHH----HcCCCcEE
Q 002183 260 VGGSGLYLVVDE--KEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIM----ERKFQPVI 333 (955)
Q Consensus 260 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~I 333 (955)
. .+.+-.+.+. .+.+ ..+ .+-.++...... -...-.+..|...+. .....++|
T Consensus 371 ~-~~a~~ev~~~~~~~~l--~~~-~iPeqL~qry~v-----------------VPpKLRLV~Laa~L~~~~k~~~~qk~i 429 (708)
T KOG0348|consen 371 K-DKAVQEVDDGPAGDKL--DSF-AIPEQLLQRYTV-----------------VPPKLRLVALAALLLNKVKFEEKQKMI 429 (708)
T ss_pred c-hhhhhhcCCccccccc--ccc-cCcHHhhhceEe-----------------cCCchhHHHHHHHHHHHhhhhhhceeE
Confidence 0 0000000000 0000 000 000000000000 001122333333332 23456899
Q ss_pred EEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHh-hcCeEeecCCCCHHHHHHHHH
Q 002183 334 VFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLL-KRGIAVHHSGLLPVIKELVEL 412 (955)
Q Consensus 334 VF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l-~~gi~~~H~~l~~~~R~~v~~ 412 (955)
||..+...++.-...+........+ . -..-.+ +.. +.++. ...+.-+||+|.+++|..++.
T Consensus 430 VF~S~~d~VeFHy~lf~~~l~~~~e-~----------~s~~~~-s~g------~~~l~~~~k~~rLHGsm~QeeRts~f~ 491 (708)
T KOG0348|consen 430 VFFSCSDSVEFHYSLFSEALLSHLE-G----------SSGAPD-SEG------LPPLFMDLKFYRLHGSMEQEERTSVFQ 491 (708)
T ss_pred EEEechhHHHHHHHHHHhhhhcccc-c----------ccCCcc-cCC------ChhhhhcceEEEecCchhHHHHHHHHH
Confidence 9999999999888877653222100 0 000000 111 12222 223777899999999999999
Q ss_pred HHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 413 LFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 413 ~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
.|+...-.||+|||+++||+|+|.+++|| .||. |.++++|+||+||++|.|..|.++.|+.+.+.
T Consensus 492 ~Fs~~~~~VLLcTDVAaRGLDlP~V~~vV----QYd~----P~s~adylHRvGRTARaG~kG~alLfL~P~Ea 556 (708)
T KOG0348|consen 492 EFSHSRRAVLLCTDVAARGLDLPHVGLVV----QYDP----PFSTADYLHRVGRTARAGEKGEALLFLLPSEA 556 (708)
T ss_pred hhccccceEEEehhhhhccCCCCCcCeEE----EeCC----CCCHHHHHHHhhhhhhccCCCceEEEecccHH
Confidence 99988888999999999999999999999 9999 99999999999999999997666666665543
No 39
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-42 Score=373.27 Aligned_cols=312 Identities=21% Similarity=0.289 Sum_probs=244.0
Q ss_pred hhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc-------------CCeEEEEccChhhHHHH
Q 002183 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-------------KQRVIYTSPLKALSNQK 135 (955)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-------------~~~vl~l~PtkaLa~Q~ 135 (955)
.++.+|. |+|+|+-+|+.+..|++++++|+||||||.+|++|++..+.. .+++++++|||+|+.|+
T Consensus 89 i~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi 168 (482)
T KOG0335|consen 89 IKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQI 168 (482)
T ss_pred cccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHH
Confidence 5566787 999999999999999999999999999999999999988742 27899999999999999
Q ss_pred HHHHHHhcC----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCC-CCChHHH
Q 002183 136 YRELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD-RERGVVW 203 (955)
Q Consensus 136 ~~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d-~~rg~~~ 203 (955)
|.+.+++.. .....+|+.++ ..+++|+|+||++|.+++..+...+++++++|+||||+|+| .+|++.+
T Consensus 169 ~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~I 248 (482)
T KOG0335|consen 169 YNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQI 248 (482)
T ss_pred HHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccH
Confidence 999998765 45667777543 34799999999999999999999999999999999999999 9999999
Q ss_pred HHHHHhCC----CcceEEEeccccCChHHHHHHHhhhcCC-CeEEEecC--CCcccceEEEeecCCCceEEeecccchhc
Q 002183 204 EESIIFLP----PAIKMVFLSATMSNATQFAEWICHLHKQ-PCHVVYTD--FRPTPLQHYVFPVGGSGLYLVVDEKEQFR 276 (955)
Q Consensus 204 ~~ii~~l~----~~~~~v~lSAT~~n~~~~~~~l~~~~~~-~~~v~~~~--~rp~pl~~~~~~~~~~~~~~~~~~~~~~~ 276 (955)
..++..+. ...|.++||||.|...+ .....+..+ .+.+-... ..+..+.+. +.++ .+.
T Consensus 249 r~iv~~~~~~~~~~~qt~mFSAtfp~~iq--~l~~~fl~~~yi~laV~rvg~~~~ni~q~--------i~~V-~~~---- 313 (482)
T KOG0335|consen 249 RKIVEQLGMPPKNNRQTLLFSATFPKEIQ--RLAADFLKDNYIFLAVGRVGSTSENITQK--------ILFV-NEM---- 313 (482)
T ss_pred HHHhcccCCCCccceeEEEEeccCChhhh--hhHHHHhhccceEEEEeeeccccccceeE--------eeee-cch----
Confidence 99987764 37899999999984422 222222211 11111110 001111111 1111 111
Q ss_pred hhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcC---------CCcEEEEEcChHHHHHHHH
Q 002183 277 EDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERK---------FQPVIVFSFSRRECEQHAM 347 (955)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~IVF~~s~~~~~~la~ 347 (955)
....++++.+.... ...++|||.+++.|..++.
T Consensus 314 --------------------------------------~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~ 355 (482)
T KOG0335|consen 314 --------------------------------------EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAA 355 (482)
T ss_pred --------------------------------------hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHH
Confidence 01112222222111 1379999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEccc
Q 002183 348 SMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATET 427 (955)
Q Consensus 348 ~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~ 427 (955)
.|...++.. ..+||..++.+|+..+..|++|.+.|||||++
T Consensus 356 ~l~~~~~~~---------------------------------------~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~V 396 (482)
T KOG0335|consen 356 FLSSNGYPA---------------------------------------KSIHGDRTQIEREQALNDFRNGKAPVLVATNV 396 (482)
T ss_pred HHhcCCCCc---------------------------------------eeecchhhhhHHHHHHHHhhcCCcceEEEehh
Confidence 999877763 56899999999999999999999999999999
Q ss_pred ccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEE
Q 002183 428 FAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIM 481 (955)
Q Consensus 428 la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~ 481 (955)
++||+|+|++++|| +||. |.+..+|+||+||+||.|..|.+++|+-
T Consensus 397 aaRGlDi~~V~hVI----nyDm----P~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 397 AARGLDIPNVKHVI----NYDM----PADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred hhcCCCCCCCceeE----Eeec----CcchhhHHHhccccccCCCCceeEEEec
Confidence 99999999999999 9999 8899999999999999999655555554
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.1e-40 Score=395.78 Aligned_cols=319 Identities=20% Similarity=0.258 Sum_probs=238.3
Q ss_pred hhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCC
Q 002183 67 GEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (955)
Q Consensus 67 ~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~ 145 (955)
..+...|||+ |+|+|.++++.+..|+++++++|||+|||++|++|++.. ++.+||++|+++|+.|+.+.++..+..
T Consensus 15 ~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~g~tlVisPl~sL~~dqv~~l~~~gi~ 91 (607)
T PRK11057 15 QVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---DGLTLVVSPLISLMKDQVDQLLANGVA 91 (607)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---CCCEEEEecHHHHHHHHHHHHHHcCCc
Confidence 3455678998 999999999999999999999999999999999997754 678999999999999999999987667
Q ss_pred eeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCC--hHHHHHH---HHh
Q 002183 146 VGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER--GVVWEES---IIF 209 (955)
Q Consensus 146 vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~r--g~~~~~i---i~~ 209 (955)
+..+.++.+. +...+++++|||++............++++|||||||++.+|++ .+.+..+ ...
T Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~ 171 (607)
T PRK11057 92 AACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (607)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh
Confidence 7777665432 23578999999998632111122234789999999999998764 3333222 223
Q ss_pred CCCcceEEEeccccCChH--HHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHH
Q 002183 210 LPPAIKMVFLSATMSNAT--QFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTF 287 (955)
Q Consensus 210 l~~~~~~v~lSAT~~n~~--~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (955)
+ ++++++++|||+++.. ++..+++. ..+...+....||. +.. .+...
T Consensus 172 ~-p~~~~v~lTAT~~~~~~~di~~~l~l--~~~~~~~~~~~r~n-l~~-----------~v~~~---------------- 220 (607)
T PRK11057 172 F-PTLPFMALTATADDTTRQDIVRLLGL--NDPLIQISSFDRPN-IRY-----------TLVEK---------------- 220 (607)
T ss_pred C-CCCcEEEEecCCChhHHHHHHHHhCC--CCeEEEECCCCCCc-cee-----------eeeec----------------
Confidence 3 4789999999998653 33333321 12222222222221 110 01100
Q ss_pred HHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 002183 288 LKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF 367 (955)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~ 367 (955)
...+..++..+......++||||+|++.|+.++..|...++.
T Consensus 221 --------------------------~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~------------ 262 (607)
T PRK11057 221 --------------------------FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGIS------------ 262 (607)
T ss_pred --------------------------cchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCC------------
Confidence 112234555555556689999999999999999999876544
Q ss_pred HHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceec
Q 002183 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447 (955)
Q Consensus 368 ~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~ 447 (955)
+..+||+|++.+|+.+++.|++|.++|||||+++++|||+|++++|| +|
T Consensus 263 ---------------------------v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI----~~ 311 (607)
T PRK11057 263 ---------------------------AAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV----HF 311 (607)
T ss_pred ---------------------------EEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEE----Ee
Confidence 68999999999999999999999999999999999999999999999 89
Q ss_pred cCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhH
Q 002183 448 DGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMV 495 (955)
Q Consensus 448 d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~ 495 (955)
|. |.+..+|+||+|||||.|.+ |.++++++.. +...+++++
T Consensus 312 d~----P~s~~~y~Qr~GRaGR~G~~--~~~ill~~~~-d~~~~~~~~ 352 (607)
T PRK11057 312 DI----PRNIESYYQETGRAGRDGLP--AEAMLFYDPA-DMAWLRRCL 352 (607)
T ss_pred CC----CCCHHHHHHHhhhccCCCCC--ceEEEEeCHH-HHHHHHHHH
Confidence 98 89999999999999999985 6677776554 334444544
No 41
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.5e-40 Score=385.54 Aligned_cols=385 Identities=28% Similarity=0.409 Sum_probs=287.5
Q ss_pred CCC-CCHHHHHHHHHH-hcCCcEEEEcCCCCchHHHHHHHHHHHHhcC-----------CeEEEEccChhhHHHHHHHHH
Q 002183 74 SFE-LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRDK-----------QRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 74 ~f~-l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~-----------~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
|.+ |+++|....++. ....++++|||||+|||.+|++.|++.+.++ .+++|++|.++|+..+...|.
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 444 999999999885 5567999999999999999999999998653 379999999999999999999
Q ss_pred HhcC----CeeEEecccccC----CCCCEEEEeHHHHHHHHhcCC--ccCCccceEEEEccccCCCCCChHHHHHHHHhC
Q 002183 141 QEFK----DVGLMTGDVTLS----PNASCLVMTTEILRGMLYRGS--EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (955)
Q Consensus 141 ~~~~----~vg~~tGd~~~~----~~~~IlV~Tpe~L~~~l~~~~--~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l 210 (955)
+.+. .|+-+|||.+.. ....|+|+|||...-.-.++. ...+-++++|+||+|.+.| .||++.+.+....
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLESIVaRt 464 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLESIVART 464 (1674)
T ss_pred hhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHHHHHHHH
Confidence 9876 566689997754 368999999999854433322 2345689999999998877 6999998776442
Q ss_pred -------CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHH
Q 002183 211 -------PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKL 283 (955)
Q Consensus 211 -------~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (955)
..++++++||||+||..+++.++.... ...+.+..++||+||.+-+. -+.+++.+.. + ++
T Consensus 465 ~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~I---------gi~ek~~~~~--~-qa 531 (1674)
T KOG0951|consen 465 FRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYI---------GITEKKPLKR--F-QA 531 (1674)
T ss_pred HHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEe---------ccccCCchHH--H-HH
Confidence 357899999999999999999998765 45667788999999975432 1222222111 0 01
Q ss_pred HHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHH
Q 002183 284 QDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV 363 (955)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i 363 (955)
++. ....+ .+...+.+++|||+.||+++-..|..++...+. +.-+
T Consensus 532 mNe----------------------------~~yeK---Vm~~agk~qVLVFVHsRkET~ktA~aIRd~~le----~dtl 576 (1674)
T KOG0951|consen 532 MNE----------------------------ACYEK---VLEHAGKNQVLVFVHSRKETAKTARAIRDKALE----EDTL 576 (1674)
T ss_pred HHH----------------------------HHHHH---HHHhCCCCcEEEEEEechHHHHHHHHHHHHHhh----hhHH
Confidence 100 01111 222335689999999999999999999753222 2222
Q ss_pred HHHHHHHH---hhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEE
Q 002183 364 EQVFQNAV---DCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440 (955)
Q Consensus 364 ~~~~~~~~---~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vV 440 (955)
..+..+.- +-|..+ ........++++|.+|+++||+||+..+|+.+|++|+.|.++|+|+|.|+|+|+|+|+.+|+
T Consensus 577 s~fmre~s~s~eilrte-a~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtVi 655 (1674)
T KOG0951|consen 577 SRFMREDSASREILRTE-AGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVI 655 (1674)
T ss_pred HHHHhcccchhhhhhhh-hhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEE
Confidence 22222110 011000 11112246889999999999999999999999999999999999999999999999999999
Q ss_pred EecceeccCCCCcc--cCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCcccccccCcH
Q 002183 441 FTAVKKWDGDSHRY--IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSY 510 (955)
Q Consensus 441 i~~~~~~d~~~~~~--~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~f~~~~ 510 (955)
|..+.-||+...++ ++|.+..||.|||||.+.|+.|-.++..+.. +....-.+ ....-|++|+|.-..
T Consensus 656 ikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~s-e~qyyls~-mn~qLpiesq~~~rl 725 (1674)
T KOG0951|consen 656 IKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHS-ELQYYLSL-MNQQLPIESQFVSRL 725 (1674)
T ss_pred ecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCch-HhhhhHHh-hhhcCCChHHHHHHh
Confidence 99999999987765 5899999999999999999999988876554 33333333 345567888875443
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=8.5e-40 Score=392.10 Aligned_cols=318 Identities=20% Similarity=0.254 Sum_probs=239.7
Q ss_pred hhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCe
Q 002183 68 EMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDV 146 (955)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~v 146 (955)
.+.+.|||+ |+|+|.++|+.+..|+|+++++|||+|||++|++|++. .++.++|++|+++|+.|+++.++..+..+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~l~~~gi~~ 80 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQLRAAGVAA 80 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHcCCcE
Confidence 355679999 99999999999999999999999999999999999764 46789999999999999999999976688
Q ss_pred eEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCC--ChHHHHHHH---HhC
Q 002183 147 GLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE--RGVVWEESI---IFL 210 (955)
Q Consensus 147 g~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~--rg~~~~~ii---~~l 210 (955)
..++|+.+. +...+|+++|||++.+..........++++|||||||++.+|+ +.+.+..+. ..+
T Consensus 81 ~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~ 160 (591)
T TIGR01389 81 AYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERF 160 (591)
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhC
Confidence 888887642 2467999999999865433333345689999999999999875 344443332 234
Q ss_pred CCcceEEEeccccCCh--HHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHH
Q 002183 211 PPAIKMVFLSATMSNA--TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFL 288 (955)
Q Consensus 211 ~~~~~~v~lSAT~~n~--~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 288 (955)
| +.+++++|||.+.. .++..|++.. .+..++.+..||. +. +.+...
T Consensus 161 ~-~~~vi~lTAT~~~~~~~~i~~~l~~~--~~~~~~~~~~r~n-l~------------~~v~~~---------------- 208 (591)
T TIGR01389 161 P-QVPRIALTATADAETRQDIRELLRLA--DANEFITSFDRPN-LR------------FSVVKK---------------- 208 (591)
T ss_pred C-CCCEEEEEeCCCHHHHHHHHHHcCCC--CCCeEecCCCCCC-cE------------EEEEeC----------------
Confidence 3 45699999999754 3455665421 1222222222221 11 111000
Q ss_pred HhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Q 002183 289 KQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368 (955)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~ 368 (955)
......+...+......++||||+|++.|+.++..|...++.
T Consensus 209 -------------------------~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~------------- 250 (591)
T TIGR01389 209 -------------------------NNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGIS------------- 250 (591)
T ss_pred -------------------------CCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCC-------------
Confidence 011223444444444678999999999999999999775543
Q ss_pred HHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceecc
Q 002183 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448 (955)
Q Consensus 369 ~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d 448 (955)
++.|||||++.+|+.+++.|.+|.++|||||+++++|||+|++++|| +||
T Consensus 251 --------------------------~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI----~~~ 300 (591)
T TIGR01389 251 --------------------------ALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVI----HYD 300 (591)
T ss_pred --------------------------EEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEE----EcC
Confidence 68899999999999999999999999999999999999999999999 888
Q ss_pred CCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhH
Q 002183 449 GDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMV 495 (955)
Q Consensus 449 ~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~ 495 (955)
. |.+..+|+||+|||||.|.. |.++++++.. +...++.++
T Consensus 301 ~----p~s~~~y~Q~~GRaGR~G~~--~~~il~~~~~-d~~~~~~~i 340 (591)
T TIGR01389 301 M----PGNLESYYQEAGRAGRDGLP--AEAILLYSPA-DIALLKRRI 340 (591)
T ss_pred C----CCCHHHHhhhhccccCCCCC--ceEEEecCHH-HHHHHHHHH
Confidence 8 88999999999999999974 5666666544 334444443
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.2e-40 Score=385.34 Aligned_cols=345 Identities=26% Similarity=0.363 Sum_probs=261.1
Q ss_pred chhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc--------CCeEEEEccChhhHHHHHH
Q 002183 66 NGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD--------KQRVIYTSPLKALSNQKYR 137 (955)
Q Consensus 66 ~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~--------~~~vl~l~PtkaLa~Q~~~ 137 (955)
..+.-.....+|||.|.+||+.+.+|+|+||+||||||||++|.+|++..+.. +..+||++|.|||.+++.+
T Consensus 12 v~~~~~~~~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~ 91 (814)
T COG1201 12 VREWFKRKFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRR 91 (814)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHH
Confidence 33333333334999999999999999999999999999999999999988733 2579999999999999999
Q ss_pred HHHHhcC----CeeEEecccccC-------CCCCEEEEeHHHHHHHHhcC--CccCCccceEEEEccccCCCCCChHHHH
Q 002183 138 ELHQEFK----DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVVWE 204 (955)
Q Consensus 138 ~l~~~~~----~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~--~~~l~~l~~vIiDEaH~l~d~~rg~~~~ 204 (955)
.+..... ++.+.|||++.. ..++|+|+|||.|.-++... ...+.++.+||+||+|.+.+..||..+.
T Consensus 92 rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Ls 171 (814)
T COG1201 92 RLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLA 171 (814)
T ss_pred HHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhh
Confidence 9887654 678899999743 36899999999998877643 3568899999999999999999999876
Q ss_pred HHHHhC---CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHH
Q 002183 205 ESIIFL---PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFV 281 (955)
Q Consensus 205 ~ii~~l---~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (955)
-.+..| .++.|.|+||||+.+.+++++|+..... +|.++.......+--..+.+.. ...+.
T Consensus 172 l~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~-~~~Iv~~~~~k~~~i~v~~p~~----------~~~~~----- 235 (814)
T COG1201 172 LSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGD-PCEIVDVSAAKKLEIKVISPVE----------DLIYD----- 235 (814)
T ss_pred hhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCC-ceEEEEcccCCcceEEEEecCC----------ccccc-----
Confidence 554432 2389999999999999999999986543 5666655443221111111110 00000
Q ss_pred HHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHH
Q 002183 282 KLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKD 361 (955)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~ 361 (955)
..........+..+.+.. ..++||+|||..+|.++..|.+.+.
T Consensus 236 -----------------------------~~~~~~~~~~i~~~v~~~-~ttLIF~NTR~~aE~l~~~L~~~~~------- 278 (814)
T COG1201 236 -----------------------------EELWAALYERIAELVKKH-RTTLIFTNTRSGAERLAFRLKKLGP------- 278 (814)
T ss_pred -----------------------------cchhHHHHHHHHHHHhhc-CcEEEEEeChHHHHHHHHHHHHhcC-------
Confidence 000112233344444444 4899999999999999999987432
Q ss_pred HHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEE
Q 002183 362 TVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441 (955)
Q Consensus 362 ~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi 441 (955)
..|.+|||+++.++|..+|+.|++|.++++|||++++.|||+-+++.||
T Consensus 279 -------------------------------~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVI 327 (814)
T COG1201 279 -------------------------------DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVI 327 (814)
T ss_pred -------------------------------CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEE
Confidence 2489999999999999999999999999999999999999999999999
Q ss_pred ecceeccCCCCcccCHHHHHHHhccCCCCCC-CCceEEEEEeCCc-cc-HHHHHHhHhCCCCcc
Q 002183 442 TAVKKWDGDSHRYIGSGEYIQMSGRAGRRGK-DDRGICIIMVDEQ-ME-MNTLKDMVLGKPAPL 502 (955)
Q Consensus 442 ~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~-~~~g~~ii~~~~~-~~-~~~~~~l~~~~~~~l 502 (955)
+|.. |.+++.+.||+||+|++-. ..+|++|....+. .+ ......+..|..+++
T Consensus 328 ----q~~S----P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~ 383 (814)
T COG1201 328 ----QLGS----PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERI 383 (814)
T ss_pred ----EeCC----cHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccC
Confidence 7777 9999999999999998744 3556655543111 12 234556667777644
No 44
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=8e-40 Score=407.51 Aligned_cols=384 Identities=22% Similarity=0.245 Sum_probs=249.9
Q ss_pred EEcCCCCchHHHHHHHHHHHHh-------------cCCeEEEEccChhhHHHHHHHHHHh----------c-----C-Ce
Q 002183 96 VSAHTSAGKTAVAEYAIAMAFR-------------DKQRVIYTSPLKALSNQKYRELHQE----------F-----K-DV 146 (955)
Q Consensus 96 v~apTGsGKTl~~~~~i~~~l~-------------~~~~vl~l~PtkaLa~Q~~~~l~~~----------~-----~-~v 146 (955)
|+||||||||++|++|++..+. .+.++||++|+|||++|+++.++.. + + .|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999887763 2468999999999999999998641 1 1 57
Q ss_pred eEEecccccC-------CCCCEEEEeHHHHHHHHhcC-CccCCccceEEEEccccCCCCCChHHHHHHH----HhCCCcc
Q 002183 147 GLMTGDVTLS-------PNASCLVMTTEILRGMLYRG-SEVLKEVAWVIFDEIHYMKDRERGVVWEESI----IFLPPAI 214 (955)
Q Consensus 147 g~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii----~~l~~~~ 214 (955)
+..+||++.+ ..++|+|+|||+|..++.+. ...++++++|||||+|.+.+..||..++..+ ..++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8899998642 36899999999999887643 3568999999999999999888898765554 3456789
Q ss_pred eEEEeccccCChHHHHHHHhhhcCCCeEEEecC-CCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhcc
Q 002183 215 KMVFLSATMSNATQFAEWICHLHKQPCHVVYTD-FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIG 293 (955)
Q Consensus 215 ~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~-~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 293 (955)
|+|+||||++|.+++++|++. ..++.++... .++.++..++.......+... .......
T Consensus 161 QrIgLSATI~n~eevA~~L~g--~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~---~~~~~~~--------------- 220 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGG--DRPVTVVNPPAMRHPQIRIVVPVANMDDVSSV---ASGTGED--------------- 220 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcC--CCCEEEECCCCCcccceEEEEecCchhhcccc---ccccccc---------------
Confidence 999999999999999999974 2356665433 233344322211000000000 0000000
Q ss_pred CCccCCCCCCCccCCCCCCCCCcH-HHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHh
Q 002183 294 GRRENGKASGRMAKGGSGSGGSDI-FKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVD 372 (955)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 372 (955)
............+ ..++..+. ...++|||||||+.|+.++..|++..-............... ..
T Consensus 221 -----------~~~~r~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~-~~ 286 (1490)
T PRK09751 221 -----------SHAGREGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAH-FE 286 (1490)
T ss_pred -----------cchhhhhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhh-hh
Confidence 0000000000011 12233322 346899999999999999999975321000000000000000 00
Q ss_pred hcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCC
Q 002183 373 CLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH 452 (955)
Q Consensus 373 ~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~ 452 (955)
... +... ..+...-...+.+|||+|++++|..+|+.|++|.+++||||+++++|||||++++|| +|+.
T Consensus 287 ~~~--~~~~---~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVI----q~gs--- 354 (1490)
T PRK09751 287 STS--GATS---NRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVI----QVAT--- 354 (1490)
T ss_pred hcc--ccch---hccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEE----EeCC---
Confidence 000 0000 000000012367999999999999999999999999999999999999999999999 7887
Q ss_pred cccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccH----HHHHHhHhCCCCcccccccC---cHHHHHHhhhcccchhh
Q 002183 453 RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEM----NTLKDMVLGKPAPLVSTFRL---SYYSILNLMSRAEGQFT 525 (955)
Q Consensus 453 ~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~----~~~~~l~~~~~~~l~s~f~~---~~~~il~ll~~~~~~~~ 525 (955)
|.++.+|+||+|||||. .++.+.+++++.+..+. ..++.++.|..+++...... -.+.++......++.
T Consensus 355 -P~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~~-- 430 (1490)
T PRK09751 355 -PLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDALQ-- 430 (1490)
T ss_pred -CCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCCC--
Confidence 99999999999999997 34567777776654322 23667888888886544322 234455554444554
Q ss_pred HHHH
Q 002183 526 AEHV 529 (955)
Q Consensus 526 ~~~~ 529 (955)
++++
T Consensus 431 ~d~l 434 (1490)
T PRK09751 431 VDEW 434 (1490)
T ss_pred HHHH
Confidence 4443
No 45
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-39 Score=343.85 Aligned_cols=334 Identities=17% Similarity=0.239 Sum_probs=263.1
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh---------cCCeEEEEccChhhHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---------DKQRVIYTSPLKALSNQ 134 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~---------~~~~vl~l~PtkaLa~Q 134 (955)
.........||+ ||-+|..|||.++.|+|+++.|.||||||.+|++|+++.+- .+..+++++|||+||.|
T Consensus 29 RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQ 108 (569)
T KOG0346|consen 29 RLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQ 108 (569)
T ss_pred HHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHH
Confidence 444555678999 99999999999999999999999999999999999998872 36789999999999999
Q ss_pred HHHHHHHhcC------CeeEEeccc-------ccCCCCCEEEEeHHHHHHHHhcCC-ccCCccceEEEEccccCCCCCCh
Q 002183 135 KYRELHQEFK------DVGLMTGDV-------TLSPNASCLVMTTEILRGMLYRGS-EVLKEVAWVIFDEIHYMKDRERG 200 (955)
Q Consensus 135 ~~~~l~~~~~------~vg~~tGd~-------~~~~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~~vIiDEaH~l~d~~rg 200 (955)
+|..+.++.. .+.-++.+. .+...++|+|+||.++..++..+. ..+..++++|+||||.+...++.
T Consensus 109 vy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYe 188 (569)
T KOG0346|consen 109 VYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYE 188 (569)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccH
Confidence 9998887643 111122222 134579999999999999999887 67889999999999999999999
Q ss_pred HHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCC-c--ccceEEEeecCCCceEEeecccchhch
Q 002183 201 VVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR-P--TPLQHYVFPVGGSGLYLVVDEKEQFRE 277 (955)
Q Consensus 201 ~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~r-p--~pl~~~~~~~~~~~~~~~~~~~~~~~~ 277 (955)
..+..+..++|+..|.++||||+++. +...-+.+..+|+.+-.++.. | ..+.+|.. .+.+.++|.
T Consensus 189 edlk~l~~~LPr~~Q~~LmSATl~dD--v~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v---------~cse~DKfl- 256 (569)
T KOG0346|consen 189 EDLKKLRSHLPRIYQCFLMSATLSDD--VQALKKLFLHNPVILKLTEGELPNPDQLTQYQV---------KCSEEDKFL- 256 (569)
T ss_pred HHHHHHHHhCCchhhheeehhhhhhH--HHHHHHHhccCCeEEEeccccCCCcccceEEEE---------EeccchhHH-
Confidence 99999999999999999999999854 334444455567665544432 2 23444332 222222221
Q ss_pred hhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCH
Q 002183 278 DNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQ 357 (955)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~ 357 (955)
-++.+++. ..-.++.|||+|+...|..+--.|...|+.+
T Consensus 257 --------------------------------------llyallKL--~LI~gKsliFVNtIdr~YrLkLfLeqFGiks- 295 (569)
T KOG0346|consen 257 --------------------------------------LLYALLKL--RLIRGKSLIFVNTIDRCYRLKLFLEQFGIKS- 295 (569)
T ss_pred --------------------------------------HHHHHHHH--HHhcCceEEEEechhhhHHHHHHHHHhCcHh-
Confidence 11122211 1124789999999999999999998877663
Q ss_pred HHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcc-----------
Q 002183 358 EEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATE----------- 426 (955)
Q Consensus 358 ~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~----------- 426 (955)
.+++|.|+...|.-++++|..|..++++|||
T Consensus 296 --------------------------------------ciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 296 --------------------------------------CILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred --------------------------------------hhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 5789999999999999999999999999999
Q ss_pred ------------------------cccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEe
Q 002183 427 ------------------------TFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMV 482 (955)
Q Consensus 427 ------------------------~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~ 482 (955)
-.+||||+.++..|+ +||. |.++..|+||+||++|+|..|.+.+|+.+
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~Vl----NFD~----P~t~~sYIHRvGRTaRg~n~GtalSfv~P 409 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVL----NFDF----PETVTSYIHRVGRTARGNNKGTALSFVSP 409 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeee----ecCC----CCchHHHHHhccccccCCCCCceEEEecc
Confidence 168999999999999 9999 99999999999999999998888888877
Q ss_pred CCcccHHHHHHhHhC
Q 002183 483 DEQMEMNTLKDMVLG 497 (955)
Q Consensus 483 ~~~~~~~~~~~l~~~ 497 (955)
.+..-...++.++.+
T Consensus 410 ~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 410 KEEFGKESLESILKD 424 (569)
T ss_pred hHHhhhhHHHHHHhh
Confidence 666444556665554
No 46
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=6.1e-41 Score=346.81 Aligned_cols=322 Identities=19% Similarity=0.219 Sum_probs=254.2
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHH-----------hcCCeEEEEccChh
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-----------RDKQRVIYTSPLKA 130 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l-----------~~~~~vl~l~Ptka 130 (955)
|+...+..+..|.. |+|+|.+.+|.++.|+|.+..|-||||||++|.+|++... ..|+-.++++|+|+
T Consensus 178 P~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRE 257 (610)
T KOG0341|consen 178 PKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRE 257 (610)
T ss_pred CHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHH
Confidence 33344444455665 9999999999999999999999999999999999986543 24788999999999
Q ss_pred hHHHHHHHHHHhcC----------CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEcccc
Q 002183 131 LSNQKYRELHQEFK----------DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHY 193 (955)
Q Consensus 131 La~Q~~~~l~~~~~----------~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~ 193 (955)
||.|.+.-+..++. ..++..|+..+ ..+.+|+|+||++|.+||.+....++-++|+.+||||+
T Consensus 258 LArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADR 337 (610)
T KOG0341|consen 258 LARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADR 337 (610)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHH
Confidence 99999988877654 34567888764 45789999999999999999888889999999999999
Q ss_pred CCCCCChHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccc
Q 002183 194 MKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKE 273 (955)
Q Consensus 194 l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~ 273 (955)
|.|.+|...+..++..+....|+++||||+|... ..|...-.-+|+.+-....-... +
T Consensus 338 miDmGFEddir~iF~~FK~QRQTLLFSATMP~KI--Q~FAkSALVKPvtvNVGRAGAAs------------l-------- 395 (610)
T KOG0341|consen 338 MIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKI--QNFAKSALVKPVTVNVGRAGAAS------------L-------- 395 (610)
T ss_pred HhhccchhhHHHHHHHHhhhhheeeeeccccHHH--HHHHHhhcccceEEecccccccc------------h--------
Confidence 9999999999999999999999999999999553 34443333333333221110000 0
Q ss_pred hhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCC
Q 002183 274 QFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLD 353 (955)
Q Consensus 274 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~ 353 (955)
+.......... ..++..+++.+.+.. .|++|||..+..++.+.++|--.|
T Consensus 396 -----dViQevEyVkq------------------------EaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKG 445 (610)
T KOG0341|consen 396 -----DVIQEVEYVKQ------------------------EAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKG 445 (610)
T ss_pred -----hHHHHHHHHHh------------------------hhhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHcc
Confidence 11111111111 345667788777654 699999999999999998884433
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCC
Q 002183 354 FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLN 433 (955)
Q Consensus 354 ~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gid 433 (955)
.. +..+|||-.+++|...++.|+.|+-.|||||++++.|+|
T Consensus 446 VE---------------------------------------avaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLD 486 (610)
T KOG0341|consen 446 VE---------------------------------------AVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLD 486 (610)
T ss_pred ce---------------------------------------eEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCC
Confidence 32 467899999999999999999999999999999999999
Q ss_pred CCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 434 MPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 434 ip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
+|++.+|| +||. |-..+.|+||+||+||.|+. |++-.+.+..
T Consensus 487 Fp~iqHVI----NyDM----P~eIENYVHRIGRTGRsg~~--GiATTfINK~ 528 (610)
T KOG0341|consen 487 FPDIQHVI----NYDM----PEEIENYVHRIGRTGRSGKT--GIATTFINKN 528 (610)
T ss_pred Cccchhhc----cCCC----hHHHHHHHHHhcccCCCCCc--ceeeeeeccc
Confidence 99999999 9999 88999999999999999995 5554444444
No 47
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=8.7e-39 Score=363.43 Aligned_cols=431 Identities=28% Similarity=0.461 Sum_probs=306.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccChhhHHHHHHHHHHhcC------
Q 002183 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFK------ 144 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~PtkaLa~Q~~~~l~~~~~------ 144 (955)
.+|.|+.||.+.+.....+++++++|||++|||.+-.|++-..++. ...|||++|+++|.||+...+...|.
T Consensus 508 ~dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 508 HDFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred hccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 4699999999999999999999999999999999999999988864 57899999999999999999998884
Q ss_pred ---CeeEEecccccCC-CCCEEEEeHHHHHHHHhc---CCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEE
Q 002183 145 ---DVGLMTGDVTLSP-NASCLVMTTEILRGMLYR---GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMV 217 (955)
Q Consensus 145 ---~vg~~tGd~~~~~-~~~IlV~Tpe~L~~~l~~---~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v 217 (955)
-.|.+|-+.++++ ++.|+|+-||-+.++|.. ...+..++++||+||+|+++..+-|..|++++.+.| ++++
T Consensus 588 g~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--CP~L 665 (1330)
T KOG0949|consen 588 GVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--CPFL 665 (1330)
T ss_pred chhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC--CCee
Confidence 1344666777776 799999999999998877 345688999999999999999999999999988775 8899
Q ss_pred EeccccCChHHHHHHHhhh---cCCCeEEEecCCCcccceEEEeecCCC--c----------------------------
Q 002183 218 FLSATMSNATQFAEWICHL---HKQPCHVVYTDFRPTPLQHYVFPVGGS--G---------------------------- 264 (955)
Q Consensus 218 ~lSAT~~n~~~~~~~l~~~---~~~~~~v~~~~~rp~pl~~~~~~~~~~--~---------------------------- 264 (955)
++|||+.|+..+..|+.+. +..+++.+....|...+..+++..... .
T Consensus 666 ~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~~~~s~dd~ 745 (1330)
T KOG0949|consen 666 VLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRELSESEDDN 745 (1330)
T ss_pred EEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhccccCCCCc
Confidence 9999999999999999844 456777777666655554443321110 0
Q ss_pred eEEeecccchhchhhHHHH--------------------------HHHHHHhhccCCc---------c-CCCC--CCCcc
Q 002183 265 LYLVVDEKEQFREDNFVKL--------------------------QDTFLKQKIGGRR---------E-NGKA--SGRMA 306 (955)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~--------------------------~~~l~~~~~~~~~---------~-~~~~--~~~~~ 306 (955)
..+-..+..........+. ...+.+....... . ..+. .....
T Consensus 746 ~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k~Vnkqle~ 825 (1330)
T KOG0949|consen 746 VVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTKEVNKQLES 825 (1330)
T ss_pred eEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhhhhhhHhhh
Confidence 0000000000000000000 0000011100000 0 0000 00000
Q ss_pred CC--CCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhcc----CCCCCHHHHHH-HHHH-------------
Q 002183 307 KG--GSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK----LDFNTQEEKDT-VEQV------------- 366 (955)
Q Consensus 307 ~~--~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~----~~~~~~~e~~~-i~~~------------- 366 (955)
.. ....-.+.+..++..+.+++..|+|+|.-.|..|+.+|..+.. .... +.+.+ +.+.
T Consensus 826 ~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~E--e~k~k~m~k~kk~~~~a~~r~Kt 903 (1330)
T KOG0949|consen 826 VVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEME--EKKDKLMEKMKKEAKRARDREKT 903 (1330)
T ss_pred cccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0011123367778888889999999999999999998876533 1111 11111 0000
Q ss_pred ----HHHHHh-----hcccccC---------Cch---------------hHHhHHHHhhcCeEeecCCCCHHHHHHHHHH
Q 002183 367 ----FQNAVD-----CLNEEDR---------NLP---------------AIELMLPLLKRGIAVHHSGLLPVIKELVELL 413 (955)
Q Consensus 367 ----~~~~~~-----~l~~~d~---------~~~---------------~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~ 413 (955)
..+..+ .+++++. ..+ ....+..++-||||+||+||+...|..||-+
T Consensus 904 ~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR~~VEvL 983 (1330)
T KOG0949|consen 904 KESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYRSLVEVL 983 (1330)
T ss_pred HHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 000000 0111110 000 1245778999999999999999999999999
Q ss_pred HhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHH
Q 002183 414 FQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKD 493 (955)
Q Consensus 414 F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~ 493 (955)
|+.|...|||||+|++.|||||.++|||..+. -.++|-.|.||+|||||+|.|..|+|+++--+ ...+.+
T Consensus 984 FR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs-------LQL~plny~QmaGRAGRRGFD~lGnV~FmgiP---~~kv~r 1053 (1330)
T KOG0949|consen 984 FRQGHLQVLFATETLSLGINMPCRTVVFAGDS-------LQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIP---RQKVQR 1053 (1330)
T ss_pred hhcCceEEEEEeeehhcccCCCceeEEEeccc-------cccCchhHHhhhccccccccccccceEEEeCc---HHHHHH
Confidence 99999999999999999999999999995433 26788999999999999999999999998543 468899
Q ss_pred hHhCCCCcccccccCcHHHHHHhh
Q 002183 494 MVLGKPAPLVSTFRLSYYSILNLM 517 (955)
Q Consensus 494 l~~~~~~~l~s~f~~~~~~il~ll 517 (955)
++......++.+++.|...++.+-
T Consensus 1054 Llts~L~diqG~~p~T~~~~l~l~ 1077 (1330)
T KOG0949|consen 1054 LLTSLLPDIQGAYPYTNTSFLGLD 1077 (1330)
T ss_pred HHHHhhhcccCCCcchhhHHHHHH
Confidence 999999999999999888877764
No 48
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-38 Score=338.29 Aligned_cols=315 Identities=21% Similarity=0.241 Sum_probs=259.5
Q ss_pred cCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh--------cCCeEEEEccChhhHHHHHHHHHHh
Q 002183 72 TYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--------DKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 72 ~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~--------~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
.--|+ |+|+|.+++|..+.|++|+-.|.||||||.+|..|++..+. .|+..+|++||++||.|++.+.+++
T Consensus 240 k~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf 319 (731)
T KOG0339|consen 240 KSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKF 319 (731)
T ss_pred hhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHh
Confidence 34555 99999999999999999999999999999999999988763 4688999999999999999999887
Q ss_pred cC----CeeEEecccc-------cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCC
Q 002183 143 FK----DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP 211 (955)
Q Consensus 143 ~~----~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~ 211 (955)
.. ++..++|+.+ +..++.|||+||++|.+|+......+.+++++||||+++|.+.+|......|..+..
T Consensus 320 ~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir 399 (731)
T KOG0339|consen 320 GKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR 399 (731)
T ss_pred hhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcC
Confidence 55 3444556554 345899999999999999999888999999999999999999999999999999999
Q ss_pred CcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhh
Q 002183 212 PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQK 291 (955)
Q Consensus 212 ~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 291 (955)
++.|.++||||++.. +......+...|+.++..+.....- ...+...++
T Consensus 400 pdrQtllFsaTf~~k--Ie~lard~L~dpVrvVqg~vgean~-------dITQ~V~V~---------------------- 448 (731)
T KOG0339|consen 400 PDRQTLLFSATFKKK--IEKLARDILSDPVRVVQGEVGEANE-------DITQTVSVC---------------------- 448 (731)
T ss_pred CcceEEEeeccchHH--HHHHHHHHhcCCeeEEEeehhcccc-------chhheeeec----------------------
Confidence 999999999999854 3355555666777776653221100 000011111
Q ss_pred ccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHc-CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q 002183 292 IGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNA 370 (955)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~ 370 (955)
.+...++.++++.|.+. ..+++|||+.-+..++.++..|.-.+++
T Consensus 449 -------------------~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~--------------- 494 (731)
T KOG0339|consen 449 -------------------PSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFN--------------- 494 (731)
T ss_pred -------------------cCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccce---------------
Confidence 11234566777777664 4579999999999999999999876655
Q ss_pred HhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCC
Q 002183 371 VDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGD 450 (955)
Q Consensus 371 ~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~ 450 (955)
|..+||+|.+.+|..++..|+++...||+||++.++|+|+|++..|| +||.
T Consensus 495 ------------------------v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVv----nyD~- 545 (731)
T KOG0339|consen 495 ------------------------VSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVV----NYDF- 545 (731)
T ss_pred ------------------------eeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceee----cccc-
Confidence 78899999999999999999999999999999999999999999999 8998
Q ss_pred CCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 451 SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 451 ~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
..+.+.|+||+||+||.|.. |+++.++++.
T Consensus 546 ---ardIdththrigrtgRag~k--GvayTlvTeK 575 (731)
T KOG0339|consen 546 ---ARDIDTHTHRIGRTGRAGEK--GVAYTLVTEK 575 (731)
T ss_pred ---cchhHHHHHHhhhccccccc--ceeeEEechh
Confidence 67889999999999999985 6777776665
No 49
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-38 Score=327.67 Aligned_cols=327 Identities=18% Similarity=0.224 Sum_probs=249.5
Q ss_pred cCCCC-CCHHHHHHHHHHh--cCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHHHHHHHhcCC
Q 002183 72 TYSFE-LDPFQRVSVACLE--RNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFKD 145 (955)
Q Consensus 72 ~~~f~-l~~~Q~~ai~~l~--~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~~~l~~~~~~ 145 (955)
.++|+ |+.+|..|+|.++ ..+++|.+++.|+|||.+|.++++..+.. .+.+++++|+++||.|..+.+.+.+.-
T Consensus 107 ~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf 186 (477)
T KOG0332|consen 107 AMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKF 186 (477)
T ss_pred HhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCc
Confidence 37899 9999999999984 45899999999999999999999988754 578999999999999999999998763
Q ss_pred eeE----EecccccCC----CCCEEEEeHHHHHHHHhc-CCccCCccceEEEEccccCCC-CCChHHHHHHHHhCCCcce
Q 002183 146 VGL----MTGDVTLSP----NASCLVMTTEILRGMLYR-GSEVLKEVAWVIFDEIHYMKD-RERGVVWEESIIFLPPAIK 215 (955)
Q Consensus 146 vg~----~tGd~~~~~----~~~IlV~Tpe~L~~~l~~-~~~~l~~l~~vIiDEaH~l~d-~~rg~~~~~ii~~l~~~~~ 215 (955)
.++ ..-|..... ..+|+|+||+.+.+++.+ .-..+..+..+|+|||+.|.+ .+++..-..+...+|++.|
T Consensus 187 ~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~Q 266 (477)
T KOG0332|consen 187 TELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQ 266 (477)
T ss_pred eeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcce
Confidence 322 112222221 468999999999998776 555678899999999998876 4577777788889999999
Q ss_pred EEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCC
Q 002183 216 MVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGR 295 (955)
Q Consensus 216 ~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 295 (955)
++++|||.... ++.|...+..++..++.... -..| .+..++|+.+...
T Consensus 267 llLFSATf~e~--V~~Fa~kivpn~n~i~Lk~e-el~L------~~IkQlyv~C~~~----------------------- 314 (477)
T KOG0332|consen 267 LLLFSATFVEK--VAAFALKIVPNANVIILKRE-ELAL------DNIKQLYVLCACR----------------------- 314 (477)
T ss_pred EEeeechhHHH--HHHHHHHhcCCCceeeeehh-hccc------cchhhheeeccch-----------------------
Confidence 99999999754 44666555443332222110 0000 1122344443322
Q ss_pred ccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcc
Q 002183 296 RENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLN 375 (955)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~ 375 (955)
..+...+++...-..-+++||||.+++.+..++..|...|+.
T Consensus 315 ------------------~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~-------------------- 356 (477)
T KOG0332|consen 315 ------------------DDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQ-------------------- 356 (477)
T ss_pred ------------------hhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCce--------------------
Confidence 222334444333345678999999999999999999887654
Q ss_pred cccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCc--
Q 002183 376 EEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHR-- 453 (955)
Q Consensus 376 ~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~-- 453 (955)
|..+||.|.-.+|..+++.|++|.-+|||+|+++|||||++.+++|| +||.....
T Consensus 357 -------------------V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~Vv----NydlP~~~~~ 413 (477)
T KOG0332|consen 357 -------------------VSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVV----NYDLPVKYTG 413 (477)
T ss_pred -------------------eEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEE----ecCCccccCC
Confidence 88999999999999999999999999999999999999999999999 77763211
Q ss_pred ccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHH
Q 002183 454 YIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKD 493 (955)
Q Consensus 454 ~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~ 493 (955)
..+++.|+||+||+||.|+ +|.+|-+.++..+.+.+.+
T Consensus 414 ~pD~etYlHRiGRtGRFGk--kG~a~n~v~~~~s~~~mn~ 451 (477)
T KOG0332|consen 414 EPDYETYLHRIGRTGRFGK--KGLAINLVDDKDSMNIMNK 451 (477)
T ss_pred CCCHHHHHHHhcccccccc--cceEEEeecccCcHHHHHH
Confidence 2368899999999999999 6888888877755555433
No 50
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-38 Score=338.76 Aligned_cols=330 Identities=20% Similarity=0.279 Sum_probs=231.6
Q ss_pred hcCCCC-CCHHHHHHHHHHh---------cCCcEEEEcCCCCchHHHHHHHHHHHHhcC----CeEEEEccChhhHHHHH
Q 002183 71 KTYSFE-LDPFQRVSVACLE---------RNESVLVSAHTSAGKTAVAEYAIAMAFRDK----QRVIYTSPLKALSNQKY 136 (955)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~---------~g~~vlv~apTGsGKTl~~~~~i~~~l~~~----~~vl~l~PtkaLa~Q~~ 136 (955)
...+.. +.|+|...+|.++ .++|+.|.||||||||++|.+||.+.+... -|++|++||++|+.|++
T Consensus 153 ~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~ 232 (620)
T KOG0350|consen 153 VKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVY 232 (620)
T ss_pred HHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHH
Confidence 334444 8899999999872 367999999999999999999999999654 58999999999999999
Q ss_pred HHHHHhcCCee----EEecccccCC------------CCCEEEEeHHHHHHHHhcC-CccCCccceEEEEccccCCCCCC
Q 002183 137 RELHQEFKDVG----LMTGDVTLSP------------NASCLVMTTEILRGMLYRG-SEVLKEVAWVIFDEIHYMKDRER 199 (955)
Q Consensus 137 ~~l~~~~~~vg----~~tGd~~~~~------------~~~IlV~Tpe~L~~~l~~~-~~~l~~l~~vIiDEaH~l~d~~r 199 (955)
+.|..+...+| .++|..++.. ..+|+|+||++|.+++.+. +..+++++++||||||+|++..|
T Consensus 233 ~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsf 312 (620)
T KOG0350|consen 233 DTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSF 312 (620)
T ss_pred HHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHH
Confidence 99999988544 4556554321 3499999999999999854 56689999999999999998766
Q ss_pred hHHHHHHHHhC----------------------------------CCcceEEEeccccC-ChHHHHHHHhhhcCCC-eEE
Q 002183 200 GVVWEESIIFL----------------------------------PPAIKMVFLSATMS-NATQFAEWICHLHKQP-CHV 243 (955)
Q Consensus 200 g~~~~~ii~~l----------------------------------~~~~~~v~lSAT~~-n~~~~~~~l~~~~~~~-~~v 243 (955)
......+..++ .++.+.+.+|||++ ++..+.++- ...| ...
T Consensus 313 Q~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~---l~~Prl~~ 389 (620)
T KOG0350|consen 313 QEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLT---LHIPRLFH 389 (620)
T ss_pred HHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhh---cCCCceEE
Confidence 65544433322 12334556666654 222222211 0111 110
Q ss_pred EecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHH
Q 002183 244 VYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKM 323 (955)
Q Consensus 244 ~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (955)
+.... .-.|..+......+++.+. ......+...
T Consensus 390 v~~~~----~~ryslp~~l~~~~vv~~~------------------------------------------~~kpl~~~~l 423 (620)
T KOG0350|consen 390 VSKPL----IGRYSLPSSLSHRLVVTEP------------------------------------------KFKPLAVYAL 423 (620)
T ss_pred eeccc----ceeeecChhhhhceeeccc------------------------------------------ccchHhHHHH
Confidence 10000 0000001000111111110 1122345555
Q ss_pred HHHcCCCcEEEEEcChHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCC
Q 002183 324 IMERKFQPVIVFSFSRRECEQHAMSMS-KLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGL 402 (955)
Q Consensus 324 l~~~~~~~~IVF~~s~~~~~~la~~L~-~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l 402 (955)
+...+..++|+|++|...+..++..|. ..+-.. ..+..+.|++
T Consensus 424 I~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~------------------------------------~~~s~~t~~l 467 (620)
T KOG0350|consen 424 ITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDN------------------------------------FKVSEFTGQL 467 (620)
T ss_pred HHHhhcceEEEEecchHHHHHHHHHHHHHhcccc------------------------------------chhhhhhhhh
Confidence 666677899999999999999998886 221111 1134578999
Q ss_pred CHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEe
Q 002183 403 LPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMV 482 (955)
Q Consensus 403 ~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~ 482 (955)
+...|...+..|..|.++||||+|+++||||+.++++|| +||. |.+...|+||+||+||+|++ |.||.+.
T Consensus 468 ~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VI----NYd~----P~~~ktyVHR~GRTARAgq~--G~a~tll 537 (620)
T KOG0350|consen 468 NGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVI----NYDP----PASDKTYVHRAGRTARAGQD--GYAITLL 537 (620)
T ss_pred hHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEe----ecCC----CchhhHHHHhhcccccccCC--ceEEEee
Confidence 999999999999999999999999999999999999999 9999 99999999999999999995 6666666
Q ss_pred CCcccHHHHHHhHh
Q 002183 483 DEQMEMNTLKDMVL 496 (955)
Q Consensus 483 ~~~~~~~~~~~l~~ 496 (955)
+.. +...+.++++
T Consensus 538 ~~~-~~r~F~klL~ 550 (620)
T KOG0350|consen 538 DKH-EKRLFSKLLK 550 (620)
T ss_pred ccc-cchHHHHHHH
Confidence 554 4445555543
No 51
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.9e-37 Score=373.52 Aligned_cols=310 Identities=21% Similarity=0.277 Sum_probs=232.2
Q ss_pred CchhhhhcCCCCCCHHHHHHHHHHhcC------CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHH
Q 002183 65 YNGEMAKTYSFELDPFQRVSVACLERN------ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~ 138 (955)
+...+...+||+|||.|.+||+.+.++ .+.+++||||||||.+|+.|++.++.++.+++|++||++||.|.++.
T Consensus 440 ~~~~~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~ 519 (926)
T TIGR00580 440 WQQEFEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFET 519 (926)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHH
Confidence 556788889999999999999998664 78999999999999999999999999999999999999999999999
Q ss_pred HHHhcC----CeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHH
Q 002183 139 LHQEFK----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (955)
Q Consensus 139 l~~~~~----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~ 203 (955)
|++.++ .+++++|..+. +..++|+|+||..+ .....++++++||+||+|++ |...
T Consensus 520 f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf-----gv~~ 589 (926)
T TIGR00580 520 FKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF-----GVKQ 589 (926)
T ss_pred HHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc-----chhH
Confidence 999876 45667776542 23689999999543 23446889999999999985 4555
Q ss_pred HHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHH
Q 002183 204 EESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKL 283 (955)
Q Consensus 204 ~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (955)
.+.+..++.++++++||||+.. ..+...+... .++..+........|+.+++... . ....
T Consensus 590 ~~~L~~~~~~~~vL~~SATpip-rtl~~~l~g~-~d~s~I~~~p~~R~~V~t~v~~~-----------~----~~~i--- 649 (926)
T TIGR00580 590 KEKLKELRTSVDVLTLSATPIP-RTLHMSMSGI-RDLSIIATPPEDRLPVRTFVMEY-----------D----PELV--- 649 (926)
T ss_pred HHHHHhcCCCCCEEEEecCCCH-HHHHHHHhcC-CCcEEEecCCCCccceEEEEEec-----------C----HHHH---
Confidence 6677778888999999999743 3333322221 11222221122222333322110 0 0000
Q ss_pred HHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHH
Q 002183 284 QDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV 363 (955)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i 363 (955)
...+...+. .+++++|||+++..++.++..|......
T Consensus 650 ---------------------------------~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~-------- 686 (926)
T TIGR00580 650 ---------------------------------REAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPE-------- 686 (926)
T ss_pred ---------------------------------HHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCC--------
Confidence 011222222 3478999999999999999888763111
Q ss_pred HHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEec
Q 002183 364 EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443 (955)
Q Consensus 364 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~ 443 (955)
..++.+||+|++.+|+.++..|++|+++|||||+++++|||+|++++||
T Consensus 687 -----------------------------~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VI-- 735 (926)
T TIGR00580 687 -----------------------------ARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTII-- 735 (926)
T ss_pred -----------------------------CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEE--
Confidence 1388999999999999999999999999999999999999999999998
Q ss_pred ceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 444 VKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 444 ~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
.+|.. ..+..+|+||+||+||.|+ .|.|++++.+.
T Consensus 736 --i~~a~---~~gls~l~Qr~GRvGR~g~--~g~aill~~~~ 770 (926)
T TIGR00580 736 --IERAD---KFGLAQLYQLRGRVGRSKK--KAYAYLLYPHQ 770 (926)
T ss_pred --EecCC---CCCHHHHHHHhcCCCCCCC--CeEEEEEECCc
Confidence 55552 2355689999999999998 68999887553
No 52
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-38 Score=327.74 Aligned_cols=324 Identities=22% Similarity=0.330 Sum_probs=256.5
Q ss_pred CCCchhhhcccCCCCCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEE
Q 002183 49 ALTKDEAIHGTFANPVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIY 124 (955)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~ 124 (955)
..++++++++.|. |||+ |+.+|++||..+..|.|++.++++|+|||.+|..++++.+.. ...+++
T Consensus 31 m~L~e~LLrgiy~-----------yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qali 99 (397)
T KOG0327|consen 31 MNLKESLLRGIYA-----------YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALI 99 (397)
T ss_pred cCCCHHHHhHHHh-----------hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHH
Confidence 4566666666665 9999 999999999999999999999999999999999999988743 467999
Q ss_pred EccChhhHHHHHHHHHHhcC----CeeEEecccccC-------C-CCCEEEEeHHHHHHHHhcCCccCCccceEEEEccc
Q 002183 125 TSPLKALSNQKYRELHQEFK----DVGLMTGDVTLS-------P-NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192 (955)
Q Consensus 125 l~PtkaLa~Q~~~~l~~~~~----~vg~~tGd~~~~-------~-~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH 192 (955)
++|+++||.|.+.....++. .+..+.|+.... + .++|+|+||+++..|+.++....+.++++|+||++
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 99999999999988888776 344456655432 2 47999999999999999998888889999999999
Q ss_pred cCCCCCChHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeeccc
Q 002183 193 YMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEK 272 (955)
Q Consensus 193 ~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~ 272 (955)
.+...+|...+..++.++|+++|++++|||+|.. +...-......|+.+.......+ ++ +..+.|.-+...
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~--vl~vt~~f~~~pv~i~vkk~~lt-l~------gikq~~i~v~k~ 250 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSD--VLEVTKKFMREPVRILVKKDELT-LE------GIKQFYINVEKE 250 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHH--HHHHHHHhccCceEEEecchhhh-hh------heeeeeeecccc
Confidence 9999999999999999999999999999999843 22333333444544433222111 11 111111111111
Q ss_pred chhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccC
Q 002183 273 EQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL 352 (955)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~ 352 (955)
+++.-++.... ...+++||||+++.++.+...|...
T Consensus 251 ------------------------------------------~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~ 286 (397)
T KOG0327|consen 251 ------------------------------------------EKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH 286 (397)
T ss_pred ------------------------------------------ccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC
Confidence 12222333333 5578999999999999999999776
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccC
Q 002183 353 DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGL 432 (955)
Q Consensus 353 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gi 432 (955)
+++ +...||.|.+.+|..+...|+.|..+||+.|+.+|+|+
T Consensus 287 ~~~---------------------------------------~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argi 327 (397)
T KOG0327|consen 287 GFT---------------------------------------VSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGI 327 (397)
T ss_pred Cce---------------------------------------EEEeecccchhhhhHHHHHhhcCCceEEeecccccccc
Confidence 665 67899999999999999999999999999999999999
Q ss_pred CCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 433 NMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 433 dip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|+..++.|| +||. |.....|+||+||+||.|.. |.++.++.+.
T Consensus 328 dv~~~slvi----nydl----P~~~~~yihR~gr~gr~grk--g~~in~v~~~ 370 (397)
T KOG0327|consen 328 DVQQVSLVV----NYDL----PARKENYIHRIGRAGRFGRK--GVAINFVTEE 370 (397)
T ss_pred chhhcceee----eecc----ccchhhhhhhcccccccCCC--ceeeeeehHh
Confidence 999999999 9999 88999999999999999995 5555555443
No 53
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.3e-36 Score=364.69 Aligned_cols=310 Identities=20% Similarity=0.297 Sum_probs=222.1
Q ss_pred CchhhhhcCCCCCCHHHHHHHHHHhcC------CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHH
Q 002183 65 YNGEMAKTYSFELDPFQRVSVACLERN------ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~ 138 (955)
+...+...+||+||+.|++|++.+..+ .+++++||||||||++|++|++..+.+|.+++|++||++||.|+++.
T Consensus 250 ~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 250 LLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYEN 329 (681)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHH
Confidence 445677889999999999999998665 48999999999999999999999999999999999999999999999
Q ss_pred HHHhcC----CeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHH
Q 002183 139 LHQEFK----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (955)
Q Consensus 139 l~~~~~----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~ 203 (955)
+++++. ++++++|+.+. +.+++|+|+||+.+.. ...++++++||+||+|++... .
T Consensus 330 l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~-----q 399 (681)
T PRK10917 330 LKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE-----Q 399 (681)
T ss_pred HHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH-----H
Confidence 999875 57889998863 3369999999987743 234789999999999987433 3
Q ss_pred HHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEec-CCCcccceEEEeecCCCceEEeecccchhchhhHHH
Q 002183 204 EESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT-DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK 282 (955)
Q Consensus 204 ~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~-~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (955)
...+.......++++||||+... .++-.. .....+.++.. .....|+..++.. ...
T Consensus 400 r~~l~~~~~~~~iL~~SATp~pr-tl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~----------~~~---------- 456 (681)
T PRK10917 400 RLALREKGENPHVLVMTATPIPR-TLAMTA--YGDLDVSVIDELPPGRKPITTVVIP----------DSR---------- 456 (681)
T ss_pred HHHHHhcCCCCCEEEEeCCCCHH-HHHHHH--cCCCceEEEecCCCCCCCcEEEEeC----------ccc----------
Confidence 33344445568899999997532 222111 11111222211 1101122221110 000
Q ss_pred HHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHH--------HHHHhccCCC
Q 002183 283 LQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQ--------HAMSMSKLDF 354 (955)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~--------la~~L~~~~~ 354 (955)
...+...+.... ..+.+++|||+....++. ++..|...
T Consensus 457 -------------------------------~~~~~~~i~~~~-~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~-- 502 (681)
T PRK10917 457 -------------------------------RDEVYERIREEI-AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA-- 502 (681)
T ss_pred -------------------------------HHHHHHHHHHHH-HcCCcEEEEEcccccccchhHHHHHHHHHHHHHH--
Confidence 001111111111 245789999997654432 22222210
Q ss_pred CCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCC
Q 002183 355 NTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNM 434 (955)
Q Consensus 355 ~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidi 434 (955)
+. ...++.+||+|++.+|+.+++.|++|.++|||||+++++|||+
T Consensus 503 -------------------~~----------------~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDi 547 (681)
T PRK10917 503 -------------------FP----------------ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDV 547 (681)
T ss_pred -------------------CC----------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCccc
Confidence 00 1348999999999999999999999999999999999999999
Q ss_pred CCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 435 PAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 435 p~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|++++|| .||.. ......|.||+||+||.|. .|.||+++++.
T Consensus 548 p~v~~VI----i~~~~---r~gls~lhQ~~GRvGR~g~--~g~~ill~~~~ 589 (681)
T PRK10917 548 PNATVMV----IENAE---RFGLAQLHQLRGRVGRGAA--QSYCVLLYKDP 589 (681)
T ss_pred CCCcEEE----EeCCC---CCCHHHHHHHhhcccCCCC--ceEEEEEECCC
Confidence 9999999 67763 2356789999999999987 68999998543
No 54
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.7e-37 Score=339.36 Aligned_cols=334 Identities=15% Similarity=0.196 Sum_probs=268.9
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
......++-+|. |+++|..|||++..+.|+||+|..|+|||++|..+++..+.. ....+|++|||++|-|+...+.
T Consensus 35 ~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~ 114 (980)
T KOG4284|consen 35 EVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVR 114 (980)
T ss_pred HHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHH
Confidence 344555667898 999999999999999999999999999999999988888743 5789999999999999999999
Q ss_pred HhcC-----CeeEEecccccC------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCC-CCChHHHHHHHH
Q 002183 141 QEFK-----DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD-RERGVVWEESII 208 (955)
Q Consensus 141 ~~~~-----~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d-~~rg~~~~~ii~ 208 (955)
...+ ....+.||+... .+++|+|+||+++..+...+.....+++++|+||||.+.+ ..|...+..++.
T Consensus 115 ~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~ 194 (980)
T KOG4284|consen 115 KVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIIN 194 (980)
T ss_pred HhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHH
Confidence 8876 466788887653 3689999999999999999988899999999999999998 668888999999
Q ss_pred hCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCccc--ceEEEeecCCCceEEeecccchhchhhHHHHHHH
Q 002183 209 FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTP--LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDT 286 (955)
Q Consensus 209 ~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~p--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (955)
.+|...|++++|||.| ..+.+.|..++.+|..+......++- +.+|++. .... ......+..
T Consensus 195 slP~~rQv~a~SATYp--~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~---------~~s~-nnsveemrl---- 258 (980)
T KOG4284|consen 195 SLPQIRQVAAFSATYP--RNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVA---------KCSP-NNSVEEMRL---- 258 (980)
T ss_pred hcchhheeeEEeccCc--hhHHHHHHHHhcccceeecccCCceeechhheeee---------ccCC-cchHHHHHH----
Confidence 9999999999999998 44668888888888776555443332 2233321 1110 000011110
Q ss_pred HHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 002183 287 FLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366 (955)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~ 366 (955)
.+..|-..+..-+..++||||++...|+-+|..|...|+.
T Consensus 259 -----------------------------klq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d----------- 298 (980)
T KOG4284|consen 259 -----------------------------KLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLD----------- 298 (980)
T ss_pred -----------------------------HHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCC-----------
Confidence 1122223333345678999999999999999999998876
Q ss_pred HHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEeccee
Q 002183 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446 (955)
Q Consensus 367 ~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~ 446 (955)
+.++.|.|++.+|..+...++.-.++|||+||..+||||-|.++.|| +
T Consensus 299 ----------------------------~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVV----N 346 (980)
T KOG4284|consen 299 ----------------------------VTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVV----N 346 (980)
T ss_pred ----------------------------eEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEE----e
Confidence 57889999999999999999999999999999999999999999999 8
Q ss_pred ccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHH
Q 002183 447 WDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLK 492 (955)
Q Consensus 447 ~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~ 492 (955)
.|. |.+-..|.||+|||||.|. .|.++.++.+..+.+.+.
T Consensus 347 iD~----p~d~eTY~HRIGRAgRFG~--~G~aVT~~~~~~e~~~f~ 386 (980)
T KOG4284|consen 347 IDA----PADEETYFHRIGRAGRFGA--HGAAVTLLEDERELKGFT 386 (980)
T ss_pred cCC----CcchHHHHHHhhhcccccc--cceeEEEeccchhhhhhH
Confidence 888 9999999999999999998 577777776654544433
No 55
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.3e-36 Score=374.69 Aligned_cols=309 Identities=19% Similarity=0.248 Sum_probs=230.6
Q ss_pred CchhhhhcCCCCCCHHHHHHHHHHhcC------CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHH
Q 002183 65 YNGEMAKTYSFELDPFQRVSVACLERN------ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~ 138 (955)
+..++...|||+||+.|.+||+.+..+ .+++++|+||+|||.+|+.++..++..+.+++|++||++||.|+++.
T Consensus 589 ~~~~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHH
Confidence 677888999999999999999998776 89999999999999999999988888899999999999999999999
Q ss_pred HHHhcC----CeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHH
Q 002183 139 LHQEFK----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (955)
Q Consensus 139 l~~~~~----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~ 203 (955)
|++.+. .++.++|..+. +..++|+|+||+.+. ....+.+++++|+||+|++ |...
T Consensus 669 f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrf-----G~~~ 738 (1147)
T PRK10689 669 FRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRF-----GVRH 738 (1147)
T ss_pred HHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhc-----chhH
Confidence 998876 45567775432 246899999997542 2334689999999999997 3334
Q ss_pred HHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHH
Q 002183 204 EESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKL 283 (955)
Q Consensus 204 ~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (955)
.+.+..++.++|+++||||+.... +...+. ...++..+........++.+++.. .+. .
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprt-l~l~~~-gl~d~~~I~~~p~~r~~v~~~~~~---------~~~------~----- 796 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRT-LNMAMS-GMRDLSIIATPPARRLAVKTFVRE---------YDS------L----- 796 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHH-HHHHHh-hCCCcEEEecCCCCCCCceEEEEe---------cCc------H-----
Confidence 566777888999999999975332 111111 122333332222222233332211 000 0
Q ss_pred HHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHH
Q 002183 284 QDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV 363 (955)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i 363 (955)
.....++..+. .+++++|||+++..++.++..|.+....
T Consensus 797 -------------------------------~~k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~-------- 835 (1147)
T PRK10689 797 -------------------------------VVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPE-------- 835 (1147)
T ss_pred -------------------------------HHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCC--------
Confidence 00112222332 2468999999999999999998763211
Q ss_pred HHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEec
Q 002183 364 EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443 (955)
Q Consensus 364 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~ 443 (955)
.+++++||+|++.+|+.++..|++|+++|||||+++++|||+|++++||..
T Consensus 836 -----------------------------~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~ 886 (1147)
T PRK10689 836 -----------------------------ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 (1147)
T ss_pred -----------------------------CcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEe
Confidence 248899999999999999999999999999999999999999999998832
Q ss_pred ceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCC
Q 002183 444 VKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 444 ~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~ 484 (955)
+.. ..+...|+||+||+||.|. .|.|++++.+
T Consensus 887 ----~ad---~fglaq~~Qr~GRvGR~g~--~g~a~ll~~~ 918 (1147)
T PRK10689 887 ----RAD---HFGLAQLHQLRGRVGRSHH--QAYAWLLTPH 918 (1147)
T ss_pred ----cCC---CCCHHHHHHHhhccCCCCC--ceEEEEEeCC
Confidence 221 2244679999999999998 6888888754
No 56
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-36 Score=346.15 Aligned_cols=313 Identities=20% Similarity=0.248 Sum_probs=238.5
Q ss_pred hhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCC
Q 002183 67 GEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (955)
Q Consensus 67 ~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~ 145 (955)
.-+...|||. +++-|.++|..+.+|+++++..|||+|||+||++|.+.. .+-+||++|..+|+.++.+.++..+-.
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~G~TLVVSPLiSLM~DQV~~l~~~Gi~ 83 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---EGLTLVVSPLISLMKDQVDQLEAAGIR 83 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---CCCEEEECchHHHHHHHHHHHHHcCce
Confidence 3466778998 999999999999999999999999999999999997655 568999999999999999999998766
Q ss_pred eeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCC--ChHHHHHHHH---h
Q 002183 146 VGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE--RGVVWEESII---F 209 (955)
Q Consensus 146 vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~--rg~~~~~ii~---~ 209 (955)
+..+.+..+. ....+++..+||+|.+-.......--.+.++||||||++++|+ |.+.+..+-. .
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~ 163 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG 163 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhh
Confidence 6655554331 2357999999999864222111124478899999999999996 6676665543 3
Q ss_pred CCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEe-cCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHH
Q 002183 210 LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVY-TDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFL 288 (955)
Q Consensus 210 l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~-~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 288 (955)
+| ++++++||||.+... ..+.+..+......++. +-.||. +++.+.....
T Consensus 164 ~~-~~p~~AlTATA~~~v-~~DI~~~L~l~~~~~~~~sfdRpN-------------i~~~v~~~~~-------------- 214 (590)
T COG0514 164 LP-NPPVLALTATATPRV-RDDIREQLGLQDANIFRGSFDRPN-------------LALKVVEKGE-------------- 214 (590)
T ss_pred CC-CCCEEEEeCCCChHH-HHHHHHHhcCCCcceEEecCCCch-------------hhhhhhhccc--------------
Confidence 45 789999999987542 23444444333333333 333332 2211111100
Q ss_pred HhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Q 002183 289 KQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368 (955)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~ 368 (955)
....+..+.+ ......++.||||.||+.|+.+|..|...++.
T Consensus 215 ------------------------~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~------------- 256 (590)
T COG0514 215 ------------------------PSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGIS------------- 256 (590)
T ss_pred ------------------------HHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCc-------------
Confidence 0001111111 22345577999999999999999999886665
Q ss_pred HHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceecc
Q 002183 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448 (955)
Q Consensus 369 ~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d 448 (955)
++.|||||+..+|+.+++.|..+.++|+|||.+|+||||.|++..|| +||
T Consensus 257 --------------------------a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfVi----H~~ 306 (590)
T COG0514 257 --------------------------AGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI----HYD 306 (590)
T ss_pred --------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEE----Eec
Confidence 68999999999999999999999999999999999999999999999 999
Q ss_pred CCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 449 GDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 449 ~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
. |.|.+.|+|-+|||||.|. .+.|++++++.
T Consensus 307 l----P~s~EsYyQE~GRAGRDG~--~a~aill~~~~ 337 (590)
T COG0514 307 L----PGSIESYYQETGRAGRDGL--PAEAILLYSPE 337 (590)
T ss_pred C----CCCHHHHHHHHhhccCCCC--cceEEEeeccc
Confidence 9 9999999999999999999 57888887665
No 57
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=9e-37 Score=350.65 Aligned_cols=402 Identities=25% Similarity=0.370 Sum_probs=289.5
Q ss_pred chhhhhcCCCC-CCHHHHHHH--HHHhcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHH
Q 002183 66 NGEMAKTYSFE-LDPFQRVSV--ACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQ 141 (955)
Q Consensus 66 ~~~~~~~~~f~-l~~~Q~~ai--~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~ 141 (955)
....++..|-. ++.||.+++ +.++.+++.+.++|||+|||+++++-++..+ -.+..++.+.|..+.+..+...+..
T Consensus 212 ~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~ 291 (1008)
T KOG0950|consen 212 SHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSP 291 (1008)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhh
Confidence 33344455655 899999998 5678999999999999999999999887654 5678899999999999999988888
Q ss_pred hcCCeeEE----ecccc---cCCCCCEEEEeHHHHHHHHhcC--CccCCccceEEEEccccCCCCCChHHHHHHHHh---
Q 002183 142 EFKDVGLM----TGDVT---LSPNASCLVMTTEILRGMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF--- 209 (955)
Q Consensus 142 ~~~~vg~~----tGd~~---~~~~~~IlV~Tpe~L~~~l~~~--~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~--- 209 (955)
++-+.|+. .|... ..+.-++.|+|.|+-..++.+- ...+..+++||+||.|++.|.+||...|.++..
T Consensus 292 ~~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y 371 (1008)
T KOG0950|consen 292 FSIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILY 371 (1008)
T ss_pred hccccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHH
Confidence 87766653 33332 2235689999999876544321 233678999999999999999999999987653
Q ss_pred --CCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHH
Q 002183 210 --LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTF 287 (955)
Q Consensus 210 --l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (955)
....+|+|+||||++|...+++|+. ..+..+.+||+||..++.+.. .+|..- +. ..........
T Consensus 372 ~~~~~~~~iIGMSATi~N~~lL~~~L~------A~~y~t~fRPv~L~E~ik~G~--~i~~~~--r~----~~lr~ia~l~ 437 (1008)
T KOG0950|consen 372 ENLETSVQIIGMSATIPNNSLLQDWLD------AFVYTTRFRPVPLKEYIKPGS--LIYESS--RN----KVLREIANLY 437 (1008)
T ss_pred hccccceeEeeeecccCChHHHHHHhh------hhheecccCcccchhccCCCc--ccccch--hh----HHHHHhhhhh
Confidence 3445889999999999999999997 467888999999999885432 222211 11 1111111100
Q ss_pred HHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHH-HH
Q 002183 288 LKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVE-QV 366 (955)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~-~~ 366 (955)
... .+ ..+.+.+..++...... +..+||||++|+.|+.+|..+...-........... .-
T Consensus 438 ~~~----------------~g--~~dpD~~v~L~tet~~e-~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~ 498 (1008)
T KOG0950|consen 438 SSN----------------LG--DEDPDHLVGLCTETAPE-GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWE 498 (1008)
T ss_pred hhh----------------cc--cCCCcceeeehhhhhhc-CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHH
Confidence 000 00 11123444555544433 357999999999999999777542111110000000 00
Q ss_pred HHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEeccee
Q 002183 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446 (955)
Q Consensus 367 ~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~ 446 (955)
.......+......+..+ +...+..|+++||+|++.++|+.|+..|++|.+.|++||+|++.|+|.|++.|+|...
T Consensus 499 ~~s~s~~lr~~~~~ld~V--l~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP-- 574 (1008)
T KOG0950|consen 499 LLSISNLLRRIPGILDPV--LAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAP-- 574 (1008)
T ss_pred HHHHHhHhhcCCcccchH--HheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCC--
Confidence 001111222222222222 6677889999999999999999999999999999999999999999999999999442
Q ss_pred ccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCccccccc
Q 002183 447 WDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFR 507 (955)
Q Consensus 447 ~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~f~ 507 (955)
..+...++..+|.||+|||||.|.|+.|.+|+.+.+. +...+.+++.+..+++.|.+.
T Consensus 575 --~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~-e~~~~~~lv~~~~~~~~S~l~ 632 (1008)
T KOG0950|consen 575 --YVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSS-EKKRVRELVNSPLKPLNSCLS 632 (1008)
T ss_pred --ccccchhhhhhHHhhhhhhhhcccccCcceEEEeecc-chhHHHHHHhccccccccccc
Confidence 2344578899999999999999999999999999877 556666999999999988773
No 58
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-37 Score=356.87 Aligned_cols=317 Identities=22% Similarity=0.291 Sum_probs=253.0
Q ss_pred hhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh--------cCCeEEEEccChhhHHHHHHH
Q 002183 68 EMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--------DKQRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~--------~~~~vl~l~PtkaLa~Q~~~~ 138 (955)
...++++|. |+|+|.+|||++..|++||.+|-||||||+.|.+|++.+.. .|+.+|+++||++|+.|++++
T Consensus 378 ~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~ 457 (997)
T KOG0334|consen 378 ETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHRE 457 (997)
T ss_pred HHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHH
Confidence 334889998 99999999999999999999999999999999999997763 378999999999999999999
Q ss_pred HHHhcC----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCcc---CCccceEEEEccccCCCCCChHHHH
Q 002183 139 LHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEV---LKEVAWVIFDEIHYMKDRERGVVWE 204 (955)
Q Consensus 139 l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~---l~~l~~vIiDEaH~l~d~~rg~~~~ 204 (955)
+..+.. .+...+|+..+ ...+.|+|+||++..+++-.++.. ++++.++|+||||+|.|.+|.+...
T Consensus 458 ~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~ 537 (997)
T KOG0334|consen 458 VRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQIT 537 (997)
T ss_pred HHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccc
Confidence 988766 34456777643 346999999999999988765544 4455599999999999999999998
Q ss_pred HHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeec-ccchhchhhHHHH
Q 002183 205 ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVD-EKEQFREDNFVKL 283 (955)
Q Consensus 205 ~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 283 (955)
.++..+++..|++++|||+|.. +...-......|+.++.. .+. ++..+..+.+.++. +..
T Consensus 538 ~Ii~nlrpdrQtvlfSatfpr~--m~~la~~vl~~Pveiiv~-~~s------vV~k~V~q~v~V~~~e~e---------- 598 (997)
T KOG0334|consen 538 RILQNLRPDRQTVLFSATFPRS--MEALARKVLKKPVEIIVG-GRS------VVCKEVTQVVRVCAIENE---------- 598 (997)
T ss_pred hHHhhcchhhhhhhhhhhhhHH--HHHHHHHhhcCCeeEEEc-cce------eEeccceEEEEEecCchH----------
Confidence 8999999999999999999966 223333344466665544 221 12222233333333 221
Q ss_pred HHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHH-cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHH
Q 002183 284 QDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME-RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDT 362 (955)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~ 362 (955)
++..++..+.. .+..++||||.+...|+.+...|.+.++++.
T Consensus 599 --------------------------------Kf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~----- 641 (997)
T KOG0334|consen 599 --------------------------------KFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCD----- 641 (997)
T ss_pred --------------------------------HHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchh-----
Confidence 22233333322 1358999999999999999999998877752
Q ss_pred HHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEe
Q 002183 363 VEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 442 (955)
Q Consensus 363 i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~ 442 (955)
.+|||.++.+|..+++.|++|.+.+|+||+++++|+|++...+||
T Consensus 642 ----------------------------------slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvv- 686 (997)
T KOG0334|consen 642 ----------------------------------SLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVV- 686 (997)
T ss_pred ----------------------------------hhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEE-
Confidence 379999999999999999999999999999999999999999999
Q ss_pred cceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEe
Q 002183 443 AVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMV 482 (955)
Q Consensus 443 ~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~ 482 (955)
+||. |-...+|+||+||+||+|+.+.+++|+.+
T Consensus 687 ---nyd~----pnh~edyvhR~gRTgragrkg~AvtFi~p 719 (997)
T KOG0334|consen 687 ---NYDF----PNHYEDYVHRVGRTGRAGRKGAAVTFITP 719 (997)
T ss_pred ---Eccc----chhHHHHHHHhcccccCCccceeEEEeCh
Confidence 9999 77888899999999999997655555554
No 59
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.9e-36 Score=360.66 Aligned_cols=313 Identities=23% Similarity=0.284 Sum_probs=217.7
Q ss_pred chhhhhcCCCCCCHHHHHHHHHHhcC------CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHH
Q 002183 66 NGEMAKTYSFELDPFQRVSVACLERN------ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 66 ~~~~~~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l 139 (955)
...+...+||+|++.|++|++.+..+ .+.+++||||||||++|++|++..+.+|.+++|++||++|+.|+++.+
T Consensus 225 ~~~~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~ 304 (630)
T TIGR00643 225 LTKFLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSL 304 (630)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHH
Confidence 44566789999999999999998655 368999999999999999999999999999999999999999999999
Q ss_pred HHhcC----CeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHH
Q 002183 140 HQEFK----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204 (955)
Q Consensus 140 ~~~~~----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~ 204 (955)
+++++ ++++++|+.+. +.+++|+|+||+.+.. ...+.++++||+||+|++....+...+
T Consensus 305 ~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~qr~~l~- 378 (630)
T TIGR00643 305 RNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQRKKLR- 378 (630)
T ss_pred HHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHHHHHHH-
Confidence 99876 57889998753 3368999999997753 234789999999999987644333222
Q ss_pred HHHHhCC--CcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCc---ccceEEEeecCCCceEEeecccchhchhh
Q 002183 205 ESIIFLP--PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP---TPLQHYVFPVGGSGLYLVVDEKEQFREDN 279 (955)
Q Consensus 205 ~ii~~l~--~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp---~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (955)
.... ...++++||||+... .++.... + ...+..-...| .|+..++. ...
T Consensus 379 ---~~~~~~~~~~~l~~SATp~pr-tl~l~~~---~-~l~~~~i~~~p~~r~~i~~~~~-----------~~~------- 432 (630)
T TIGR00643 379 ---EKGQGGFTPHVLVMSATPIPR-TLALTVY---G-DLDTSIIDELPPGRKPITTVLI-----------KHD------- 432 (630)
T ss_pred ---HhcccCCCCCEEEEeCCCCcH-HHHHHhc---C-CcceeeeccCCCCCCceEEEEe-----------Ccc-------
Confidence 2222 257899999997532 2221111 1 11111111111 12221111 000
Q ss_pred HHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCCCCCH
Q 002183 280 FVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQ 357 (955)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~ 357 (955)
....++..+.+ ..+.+++|||+.....+.+.
T Consensus 433 ------------------------------------~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~----------- 465 (630)
T TIGR00643 433 ------------------------------------EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLD----------- 465 (630)
T ss_pred ------------------------------------hHHHHHHHHHHHHHhCCcEEEEEccccccccch-----------
Confidence 00111222211 13468999999875443220
Q ss_pred HHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCc
Q 002183 358 EEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAK 437 (955)
Q Consensus 358 ~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~ 437 (955)
...+...++.....+ ....++.+||+|++.+|+.+++.|++|+++|||||+++++|||+|++
T Consensus 466 --~~~a~~~~~~L~~~~----------------~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v 527 (630)
T TIGR00643 466 --LKAAEALYERLKKAF----------------PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNA 527 (630)
T ss_pred --HHHHHHHHHHHHhhC----------------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCC
Confidence 000011111100000 12358999999999999999999999999999999999999999999
Q ss_pred EEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCC
Q 002183 438 TVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 438 ~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~ 484 (955)
++|| .||.. ..+...|.||+||+||.|. .|.||+++.+
T Consensus 528 ~~VI----i~~~~---r~gls~lhQ~~GRvGR~g~--~g~~il~~~~ 565 (630)
T TIGR00643 528 TVMV----IEDAE---RFGLSQLHQLRGRVGRGDH--QSYCLLVYKN 565 (630)
T ss_pred cEEE----EeCCC---cCCHHHHHHHhhhcccCCC--CcEEEEEECC
Confidence 9999 67763 2367889999999999987 5888888843
No 60
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-36 Score=331.96 Aligned_cols=317 Identities=22% Similarity=0.317 Sum_probs=248.6
Q ss_pred hhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc--------CCeEEEEccChhhHHHHHHHHH
Q 002183 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD--------KQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~--------~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
....+|. |+|+|.+|+|.+..+++++.|||||||||++|.+|++..+.. |-+++|++|+|+|+.|.++++.
T Consensus 151 l~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~ 230 (593)
T KOG0344|consen 151 LQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMR 230 (593)
T ss_pred HhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHH
Confidence 3456898 999999999999999999999999999999999999988842 4689999999999999999999
Q ss_pred Hhc--CCeeE----Eecccc--------cCCCCCEEEEeHHHHHHHHhcCC--ccCCccceEEEEccccCCCC-CChHHH
Q 002183 141 QEF--KDVGL----MTGDVT--------LSPNASCLVMTTEILRGMLYRGS--EVLKEVAWVIFDEIHYMKDR-ERGVVW 203 (955)
Q Consensus 141 ~~~--~~vg~----~tGd~~--------~~~~~~IlV~Tpe~L~~~l~~~~--~~l~~l~~vIiDEaH~l~d~-~rg~~~ 203 (955)
++- ...+. +..... ....++|+|.||-++...+..+. ..+..+.|+|+||+|.+.+. .|....
T Consensus 231 k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Ql 310 (593)
T KOG0344|consen 231 KYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQL 310 (593)
T ss_pred hcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHH
Confidence 987 32222 222110 11247899999999999888776 56889999999999999998 677777
Q ss_pred HHHHHhC-CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHH
Q 002183 204 EESIIFL-PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK 282 (955)
Q Consensus 204 ~~ii~~l-~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (955)
..++..+ .+++.+-+||||.+.. +.+|...++.....++....... .. .++.+..|.
T Consensus 311 a~I~sac~s~~i~~a~FSat~~~~--VEE~~~~i~~~~~~vivg~~~sa-~~-------------~V~QelvF~------ 368 (593)
T KOG0344|consen 311 ADIYSACQSPDIRVALFSATISVY--VEEWAELIKSDLKRVIVGLRNSA-NE-------------TVDQELVFC------ 368 (593)
T ss_pred HHHHHHhcCcchhhhhhhccccHH--HHHHHHHhhccceeEEEecchhH-hh-------------hhhhhheee------
Confidence 7777776 4678899999998844 55999988777666655433111 00 000000000
Q ss_pred HHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhc-cCCCCCHHHHH
Q 002183 283 LQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMS-KLDFNTQEEKD 361 (955)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~-~~~~~~~~e~~ 361 (955)
......+.++...+...-..|++||+.+...|.++...|. -.+.
T Consensus 369 ----------------------------gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i------- 413 (593)
T KOG0344|consen 369 ----------------------------GSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNI------- 413 (593)
T ss_pred ----------------------------ecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCc-------
Confidence 0112234445555555455789999999999999999884 2111
Q ss_pred HHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEE
Q 002183 362 TVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441 (955)
Q Consensus 362 ~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi 441 (955)
.|+++||..++.+|+..++.|+.|+++||+||+++++|+|+.+++.||
T Consensus 414 --------------------------------~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI 461 (593)
T KOG0344|consen 414 --------------------------------NVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI 461 (593)
T ss_pred --------------------------------ceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE
Confidence 389999999999999999999999999999999999999999999999
Q ss_pred ecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 442 TAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 442 ~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
+||. |.+...|+||+||+||+|+ .|.+|.++++.
T Consensus 462 ----nyD~----p~s~~syihrIGRtgRag~--~g~Aitfytd~ 495 (593)
T KOG0344|consen 462 ----NYDF----PQSDLSYIHRIGRTGRAGR--SGKAITFYTDQ 495 (593)
T ss_pred ----ecCC----CchhHHHHHHhhccCCCCC--CcceEEEeccc
Confidence 8999 8899999999999999999 57777777663
No 61
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.5e-34 Score=343.65 Aligned_cols=314 Identities=20% Similarity=0.240 Sum_probs=233.1
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-C----eeEEe-cc
Q 002183 79 PFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-D----VGLMT-GD 152 (955)
Q Consensus 79 ~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~----vg~~t-Gd 152 (955)
.+-.+.+..+.++.+++++|+||||||+++.++++.....+.+++++.|+|++|.|+++.+.+.++ . ||... ++
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~ 84 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE 84 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc
Confidence 445566778889999999999999999999999998776678999999999999999999977665 3 44433 33
Q ss_pred cccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccc-cCCCCCChHHH-HHHHHhCCCcceEEEeccccCChHHHH
Q 002183 153 VTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH-YMKDRERGVVW-EESIIFLPPAIKMVFLSATMSNATQFA 230 (955)
Q Consensus 153 ~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH-~l~d~~rg~~~-~~ii~~l~~~~~~v~lSAT~~n~~~~~ 230 (955)
.....+.+|+|+||++|.+++.+. ..++++++|||||+| +..+.+++..+ ..+...++++.|+|+||||+++. .+.
T Consensus 85 ~~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~-~l~ 162 (819)
T TIGR01970 85 NKVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE-RLS 162 (819)
T ss_pred cccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH-HHH
Confidence 345567899999999999988764 468999999999999 46776666544 34555678899999999999754 355
Q ss_pred HHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCC
Q 002183 231 EWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGS 310 (955)
Q Consensus 231 ~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (955)
++++ .+.++....+..|++++..+ ...... +..
T Consensus 163 ~~l~-----~~~vI~~~gr~~pVe~~y~~---------~~~~~~-----~~~---------------------------- 195 (819)
T TIGR01970 163 SLLP-----DAPVVESEGRSFPVEIRYLP---------LRGDQR-----LED---------------------------- 195 (819)
T ss_pred HHcC-----CCcEEEecCcceeeeeEEee---------cchhhh-----HHH----------------------------
Confidence 5543 12334444555555543221 111100 000
Q ss_pred CCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHH
Q 002183 311 GSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPL 390 (955)
Q Consensus 311 ~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~ 390 (955)
.+...+..+.....+.+|||++++.+++.++..|.+....
T Consensus 196 -----~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~----------------------------------- 235 (819)
T TIGR01970 196 -----AVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDS----------------------------------- 235 (819)
T ss_pred -----HHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCC-----------------------------------
Confidence 0111222222233578999999999999999998652000
Q ss_pred hhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecce----eccCCC------CcccCHHHH
Q 002183 391 LKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK----KWDGDS------HRYIGSGEY 460 (955)
Q Consensus 391 l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~----~~d~~~------~~~~s~~ey 460 (955)
...+..+||+|++.+|..+++.|++|..+|||||+++++|||+|++++||++.. .||... ..++|.++|
T Consensus 236 -~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa 314 (819)
T TIGR01970 236 -DVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASA 314 (819)
T ss_pred -CcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHH
Confidence 012778999999999999999999999999999999999999999999997653 355432 246788999
Q ss_pred HHHhccCCCCCCCCceEEEEEeCCc
Q 002183 461 IQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 461 ~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
.||+|||||.+ .|.||.++++.
T Consensus 315 ~QR~GRAGR~~---~G~cyrL~t~~ 336 (819)
T TIGR01970 315 TQRAGRAGRLE---PGVCYRLWSEE 336 (819)
T ss_pred HhhhhhcCCCC---CCEEEEeCCHH
Confidence 99999999985 59999998765
No 62
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3e-34 Score=339.41 Aligned_cols=312 Identities=15% Similarity=0.159 Sum_probs=211.5
Q ss_pred CchhhhhcCCCCCCHHHHHHHHHHhcCC-cEEEEcCCCCchHHHHHHHHHHHH---hcCCeEEEEccChhhHHHHHHHHH
Q 002183 65 YNGEMAKTYSFELDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAF---RDKQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g~-~vlv~apTGsGKTl~~~~~i~~~l---~~~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
+...+....||+|+|+|.++++.+..|+ +++++||||||||.++....+... ....+++|++|||+|++|+++.+.
T Consensus 4 f~~ff~~~~G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~ 83 (844)
T TIGR02621 4 FDEWYQGLHGYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAE 83 (844)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHH
Confidence 3445666689999999999999999998 577889999999996543322111 123467778899999999999988
Q ss_pred HhcC---------------------------CeeEEecccccC-------CCCCEEEEeHHHHHHHH-hcC---------
Q 002183 141 QEFK---------------------------DVGLMTGDVTLS-------PNASCLVMTTEILRGML-YRG--------- 176 (955)
Q Consensus 141 ~~~~---------------------------~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l-~~~--------- 176 (955)
++.. .+..++|+...+ ..++|+|+|++.+.+-. .++
T Consensus 84 ~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~p 163 (844)
T TIGR02621 84 KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRP 163 (844)
T ss_pred HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCcccccccccccccc
Confidence 7653 245678887653 36799999976554321 111
Q ss_pred --CccCCccceEEEEccccCCCCCChHHHHHHHHhC--CCc---ceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCC
Q 002183 177 --SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL--PPA---IKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR 249 (955)
Q Consensus 177 --~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l--~~~---~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~r 249 (955)
...+.+++++|+|||| .+.+|...++.++..+ ++. .|+++||||++.. +.+....+...+..+.....+
T Consensus 164 i~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~e--i~~l~~~~~~~p~~i~V~~~~ 239 (844)
T TIGR02621 164 LHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTD--GPDRTTLLSAEDYKHPVLKKR 239 (844)
T ss_pred chhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCcc--HHHHHHHHccCCceeeccccc
Confidence 0126789999999999 5678889999998864 432 6999999999853 223222232233322211111
Q ss_pred ccc--ceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHc
Q 002183 250 PTP--LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER 327 (955)
Q Consensus 250 p~p--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 327 (955)
.+. +.++ ...+...+ .. .....+..+...
T Consensus 240 l~a~ki~q~----------v~v~~e~K-----l~----------------------------------~lv~~L~~ll~e 270 (844)
T TIGR02621 240 LAAKKIVKL----------VPPSDEKF-----LS----------------------------------TMVKELNLLMKD 270 (844)
T ss_pred ccccceEEE----------EecChHHH-----HH----------------------------------HHHHHHHHHHhh
Confidence 110 0111 01110000 00 001111122223
Q ss_pred CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHH
Q 002183 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (955)
Q Consensus 328 ~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R 407 (955)
..+++||||+|++.|+.++..|.+. |+..+||+|.+.+|
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~-----------------------------------------g~~lLHG~m~q~dR 309 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKE-----------------------------------------KFELLTGTLRGAER 309 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-----------------------------------------CCeEeeCCCCHHHH
Confidence 4578999999999999999999753 24688999999999
Q ss_pred H-----HHHHHHhc----CC-------ccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCC
Q 002183 408 E-----LVELLFQE----GL-------VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRG 471 (955)
Q Consensus 408 ~-----~v~~~F~~----g~-------i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G 471 (955)
+ .+++.|++ |. .+|||||+++++|||++. ++|| +++. | .+.|+||+||+||.|
T Consensus 310 ~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI----~d~a----P--~esyIQRiGRtgR~G 378 (844)
T TIGR02621 310 DDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLV----CDLA----P--FESMQQRFGRVNRFG 378 (844)
T ss_pred hhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEE----ECCC----C--HHHHHHHhcccCCCC
Confidence 9 78899987 54 789999999999999998 6777 3333 3 589999999999999
Q ss_pred CCCceEEEEE
Q 002183 472 KDDRGICIIM 481 (955)
Q Consensus 472 ~~~~g~~ii~ 481 (955)
..+.+.+.++
T Consensus 379 ~~~~~~i~vv 388 (844)
T TIGR02621 379 ELQACQIAVV 388 (844)
T ss_pred CCCCceEEEE
Confidence 8655534333
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=3.5e-33 Score=327.10 Aligned_cols=325 Identities=14% Similarity=0.070 Sum_probs=219.7
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC-CeEEEEccChhhHHHHHHHHHHhcC----CeeEE
Q 002183 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYTSPLKALSNQKYRELHQEFK----DVGLM 149 (955)
Q Consensus 75 f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~-~~vl~l~PtkaLa~Q~~~~l~~~~~----~vg~~ 149 (955)
+.|+++|.+|++.+..+++.+++||||+|||+++...+...+..+ .++||++||++|++|+.++|.++.. .++.+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 679999999999998899999999999999998765444444444 4999999999999999999998753 34345
Q ss_pred ecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccCChHH-
Q 002183 150 TGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQ- 228 (955)
Q Consensus 150 tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~- 228 (955)
.|+.....+.+|+|+||+++.+.. ...++++++||+||||++.. ..+..++..+++..++++||||+.+...
T Consensus 193 ~~g~~~~~~~~I~VaT~qsl~~~~---~~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~~~lGLTATp~~~~~~ 265 (501)
T PHA02558 193 YSGTAKDTDAPIVVSTWQSAVKQP---KEWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCKFKFGLTGSLRDGKAN 265 (501)
T ss_pred ecCcccCCCCCEEEeeHHHHhhch---hhhccccCEEEEEchhcccc----hhHHHHHHhhhccceEEEEeccCCCcccc
Confidence 555554567899999999987543 23578999999999999975 3467777778777889999999975432
Q ss_pred ---HHHHHhhhcCCCeEEEecC-----CCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCC
Q 002183 229 ---FAEWICHLHKQPCHVVYTD-----FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGK 300 (955)
Q Consensus 229 ---~~~~l~~~~~~~~~v~~~~-----~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 300 (955)
+..+++ ...+.+... ....+++.......... ..........+......+...
T Consensus 266 ~~~~~~~fG----~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~l~~~---------- 326 (501)
T PHA02558 266 ILQYVGLFG----DIFKPVTTSQLMEEGQVTDLKINSIFLRYPD-----EDRVKLKGEDYQEEIKYITSH---------- 326 (501)
T ss_pred HHHHHHhhC----CceEEecHHHHHhCCCcCCceEEEEeccCCH-----HHhhhhcccchHHHHHHHhcc----------
Confidence 112222 111111110 00111111110000000 000000001111111111100
Q ss_pred CCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCC
Q 002183 301 ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRN 380 (955)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 380 (955)
......+..++..+.+ .+.+++||+.++++|+.++..|.+.+.+
T Consensus 327 ----------~~Rn~~I~~~~~~~~~-~~~~~lV~~~~~~h~~~L~~~L~~~g~~------------------------- 370 (501)
T PHA02558 327 ----------TKRNKWIANLALKLAK-KGENTFVMFKYVEHGKPLYEMLKKVYDK------------------------- 370 (501)
T ss_pred ----------HHHHHHHHHHHHHHHh-cCCCEEEEEEEHHHHHHHHHHHHHcCCC-------------------------
Confidence 0001122333333333 3467899999999999999999875543
Q ss_pred chhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEc-ccccccCCCCCcEEEEecceeccCCCCcccCHHH
Q 002183 381 LPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFAT-ETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGE 459 (955)
Q Consensus 381 ~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT-~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~e 459 (955)
+.++||++++.+|+.+++.|++|...||||| +++++|+|+|.+++|| .+++ +.+...
T Consensus 371 --------------v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vI----l~~p----~~s~~~ 428 (501)
T PHA02558 371 --------------VYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVI----FAHP----SKSKII 428 (501)
T ss_pred --------------EEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEE----EecC----Ccchhh
Confidence 6899999999999999999999999999998 8999999999999999 4555 667889
Q ss_pred HHHHhccCCCCCCCCc-eEEEEEeC
Q 002183 460 YIQMSGRAGRRGKDDR-GICIIMVD 483 (955)
Q Consensus 460 y~Q~~GRaGR~G~~~~-g~~ii~~~ 483 (955)
|+||+||+||.+..+. +.++-+++
T Consensus 429 ~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 429 VLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred hhhhhhccccCCCCCceEEEEEeec
Confidence 9999999999876432 33333444
No 64
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.9e-35 Score=305.48 Aligned_cols=329 Identities=19% Similarity=0.207 Sum_probs=259.0
Q ss_pred chhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc----CCeEEEEccChhhHHHHHHHHH
Q 002183 66 NGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 66 ~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~----~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
..+....-||. |+|+|++.+|.++.+++++..|-||||||.+|++|+++.+.. |.|+++++||++|+.|..+-++
T Consensus 32 v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvk 111 (529)
T KOG0337|consen 32 VLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVK 111 (529)
T ss_pred HHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHH
Confidence 34445566888 999999999999999999999999999999999999999965 4599999999999999999998
Q ss_pred HhcC----CeeEEecccc-------cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh
Q 002183 141 QEFK----DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (955)
Q Consensus 141 ~~~~----~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~ 209 (955)
+... ...+++|+.+ ++.+++||++||+++..+.-.-...++.+.||||||++.+..++|.....+++..
T Consensus 112 dlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~r 191 (529)
T KOG0337|consen 112 DLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSR 191 (529)
T ss_pred HhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHh
Confidence 8766 3344555544 4678999999999998766655677899999999999999999999999999999
Q ss_pred CCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCC-Cccc-ceEEEeecCCCceEEeecccchhchhhHHHHHHHH
Q 002183 210 LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDF-RPTP-LQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTF 287 (955)
Q Consensus 210 l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~-rp~p-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (955)
+|...|+++||||+|+. +.++...-...|..+-..-. +-.+ ++.. +..+
T Consensus 192 l~~~~QTllfSatlp~~--lv~fakaGl~~p~lVRldvetkise~lk~~---------f~~~------------------ 242 (529)
T KOG0337|consen 192 LPESRQTLLFSATLPRD--LVDFAKAGLVPPVLVRLDVETKISELLKVR---------FFRV------------------ 242 (529)
T ss_pred CCCcceEEEEeccCchh--hHHHHHccCCCCceEEeehhhhcchhhhhh---------eeee------------------
Confidence 99999999999999954 44555443334444321110 0000 0000 0000
Q ss_pred HHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHc-CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 002183 288 LKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366 (955)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~ 366 (955)
...++...|+..+... ...+++||+.++.+++.+...|...++.
T Consensus 243 ------------------------~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~----------- 287 (529)
T KOG0337|consen 243 ------------------------RKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGE----------- 287 (529)
T ss_pred ------------------------ccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCC-----------
Confidence 0122333444444433 2357999999999999999998876654
Q ss_pred HHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEeccee
Q 002183 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446 (955)
Q Consensus 367 ~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~ 446 (955)
...++|.|++.-|..-...|+.++..+||.|+++++|+|+|-.+.|| +
T Consensus 288 ----------------------------~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi----n 335 (529)
T KOG0337|consen 288 ----------------------------GSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI----N 335 (529)
T ss_pred ----------------------------ccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc----c
Confidence 45679999999999999999999999999999999999999999999 8
Q ss_pred ccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHh
Q 002183 447 WDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDM 494 (955)
Q Consensus 447 ~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l 494 (955)
||. |.++.-|+||+||+.|+|..+..+.++..++.++.-.+.-.
T Consensus 336 yd~----p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lf 379 (529)
T KOG0337|consen 336 YDF----PPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLF 379 (529)
T ss_pred ccC----CCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhh
Confidence 999 88888999999999999998888888887776555555443
No 65
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.5e-33 Score=339.57 Aligned_cols=315 Identities=19% Similarity=0.250 Sum_probs=229.9
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-----CeeEEecc
Q 002183 78 DPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-----DVGLMTGD 152 (955)
Q Consensus 78 ~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-----~vg~~tGd 152 (955)
+.+-.+.+.++.++++++++||||||||+++.++++.....+++++++.|+|++|.|+++.+.+.++ .||..++.
T Consensus 7 ~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~ 86 (812)
T PRK11664 7 AAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRA 86 (812)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecC
Confidence 3444566777889999999999999999999999887655557999999999999999999977654 45554443
Q ss_pred c-ccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEcccc-CCCCCChH-HHHHHHHhCCCcceEEEeccccCChHHH
Q 002183 153 V-TLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHY-MKDRERGV-VWEESIIFLPPAIKMVFLSATMSNATQF 229 (955)
Q Consensus 153 ~-~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~-l~d~~rg~-~~~~ii~~l~~~~~~v~lSAT~~n~~~~ 229 (955)
. ......+|+|+||++|.+++... ..++++++|||||+|. ..+.+... ...+++..++++.|+|+||||++.. .+
T Consensus 87 ~~~~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~-~l 164 (812)
T PRK11664 87 ESKVGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND-RL 164 (812)
T ss_pred ccccCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH-HH
Confidence 3 35567799999999999988764 4689999999999996 33333222 1234556678899999999999753 45
Q ss_pred HHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCC
Q 002183 230 AEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGG 309 (955)
Q Consensus 230 ~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (955)
.+++. + ..++....+..|+.++..+. ..... +.
T Consensus 165 ~~~~~----~-~~~I~~~gr~~pV~~~y~~~---------~~~~~-----~~---------------------------- 197 (812)
T PRK11664 165 QQLLP----D-APVIVSEGRSFPVERRYQPL---------PAHQR-----FD---------------------------- 197 (812)
T ss_pred HHhcC----C-CCEEEecCccccceEEeccC---------chhhh-----HH----------------------------
Confidence 55543 2 22334444555555432211 00000 00
Q ss_pred CCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHH
Q 002183 310 SGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLP 389 (955)
Q Consensus 310 ~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~ 389 (955)
..+...+..+.....+.+|||++++++++.++..|......
T Consensus 198 -----~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~---------------------------------- 238 (812)
T PRK11664 198 -----EAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVAS---------------------------------- 238 (812)
T ss_pred -----HHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccC----------------------------------
Confidence 00111222222334578999999999999999999751100
Q ss_pred HhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecce----eccCCCC------cccCHHH
Q 002183 390 LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK----KWDGDSH------RYIGSGE 459 (955)
Q Consensus 390 ~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~----~~d~~~~------~~~s~~e 459 (955)
...+..+||+|++.+|..++..|++|..+|||||+++++|||+|++++||++.. .||.... .++|.++
T Consensus 239 --~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkas 316 (812)
T PRK11664 239 --DVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQAS 316 (812)
T ss_pred --CceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhh
Confidence 012778999999999999999999999999999999999999999999997653 3665422 3567889
Q ss_pred HHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 460 YIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 460 y~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|.||+|||||.+ .|.||.++++.
T Consensus 317 a~QR~GRaGR~~---~G~cyrL~t~~ 339 (812)
T PRK11664 317 MTQRAGRAGRLE---PGICLHLYSKE 339 (812)
T ss_pred hhhhccccCCCC---CcEEEEecCHH
Confidence 999999999985 59999998765
No 66
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=100.00 E-value=5.2e-34 Score=306.98 Aligned_cols=227 Identities=46% Similarity=0.788 Sum_probs=199.4
Q ss_pred HHHHHhhHHHHHhhcchhHHHHHHHHHHHHHhccccCChhhHHHHHHHHHHHHHHHHHHHHHhcCchhhhhccCCCcEEE
Q 002183 527 EHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPERVLYYLGSGRLIK 606 (955)
Q Consensus 527 ~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gr~v~ 606 (955)
|+||++||+|||..+.+|.+++++++++++++++...++.++.+||+++.++..++++++.++.+|.++++||+|||||+
T Consensus 1 E~mikrSF~qfq~~~~lP~~~~~~~~~e~~~~~i~~~~~~~v~~y~~l~~~l~~~~~~~~~~i~~p~~~~~fL~~GRlV~ 80 (268)
T PF13234_consen 1 EYMIKRSFSQFQNQRKLPELEKKLKELEEELDAIKIEDEEDVEEYYDLRQELEELRKELRKIITSPKYCLPFLQPGRLVV 80 (268)
T ss_dssp HHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHCS--TTCTCCHHHHHHHHHHHHHHHHHHHHHCTCCCHHHHS-TTEEEE
T ss_pred ChhHHHhHHHHcccccCHHHHHHHHHHHHHHHhcccccHhHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHhCCCCCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCccceeEEEEEeecCCCC--------------cceec---------------------C----CCCceEEEeecCC
Q 002183 607 VREGGTDWGWGVVVNVVKKPSA--------------GVGTL---------------------P----SRGGGYIVPVQLP 647 (955)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~---------------------~----~~~~~~~~~~~~~ 647 (955)
|++++.+||||||+++....+. .|+|| | +.+.+.+++|+++
T Consensus 81 v~~~~~~~~wgvvv~~~~~~~~~~~~~~~~~~~~~~vVdvL~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~vv~v~l~ 160 (268)
T PF13234_consen 81 VRDGDRDFGWGVVVNFAKKSNPKGNLGSSSSKEKSYVVDVLLPCSPDSKSAKNSSDLPEPVKPCSPGEKGEMEVVPVPLS 160 (268)
T ss_dssp EEETTCEEEEEEEEEEEE---SS--TT-SSSTCCCEEEEEECCCEETTS-CCGTTTGGCTS-BS-TT--EEEEEEEEECC
T ss_pred EecCCCccceeEEEeccccccccccccccCCCCCcEEEEEEeeccccccccccccCCCCCCCCCCCCCCCeEEEEEeeHH
Confidence 9999999999999998865411 15555 1 3467789999999
Q ss_pred ccceeceeeeecCCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHHcCCCCCC-C
Q 002183 648 LISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKS-Q 726 (955)
Q Consensus 648 ~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~ 726 (955)
+|..||++++++|+++++.++|+++.+.|.++.++||+|+|.+||++||+|+|.++.+.+.+++.|+++|.+||||.| +
T Consensus 161 ~I~~ISs~rl~lp~dl~~~~~r~~~~~~l~el~~r~~~giP~LDPi~DmkI~d~~~~e~~~k~~~Le~rl~~~~~~~~~~ 240 (268)
T PF13234_consen 161 CISSISSVRLKLPKDLRPQEARKQVLKSLQELLKRFPDGIPLLDPIKDMKIKDPEFVELVKKIEALEKRLSSHPLHKCPD 240 (268)
T ss_dssp GEEEEEEEE----TTTTSCCCHHHHHHHHHHHHHHSSS--TCHHCHHHH----HHHHHHHHHHHHHHHHHHHSCHCCSSS
T ss_pred HHHHhhceeeeCcccccchHHHHHHHHHHHHHHHhCCCCCCccChHHhCCCCcHHHHHHHHHHHHHHHHHHhCCCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002183 727 DENQIRCFQRKAEVNHEIQQLKSKMRD 753 (955)
Q Consensus 727 ~~~~~~~~~~~~~l~~~i~~l~~~i~~ 753 (955)
+++||..++++..|+.+++.|+++|++
T Consensus 241 ~~~~~~~~~~k~~l~~~i~~Lk~~l~~ 267 (268)
T PF13234_consen 241 FEEHYALYHEKAELQEEIKALKRQLSD 267 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999986
No 67
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=4.1e-33 Score=315.74 Aligned_cols=295 Identities=16% Similarity=0.202 Sum_probs=201.5
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHh--cCCeEEEEccChhhHHHHHHHHHHhcC-CeeEEeccccc--------------
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTL-------------- 155 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~--~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~tGd~~~-------------- 155 (955)
+++|+||||||||.+|+++++..+. .+.+++|++|+++|++|+++.+...|+ .+++++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 5899999999999999999998774 357999999999999999999999987 67776664431
Q ss_pred -------C----CCCCEEEEeHHHHHHHHhcCCc----cCC--ccceEEEEccccCCCCCChHHHHHHHHhCC-CcceEE
Q 002183 156 -------S----PNASCLVMTTEILRGMLYRGSE----VLK--EVAWVIFDEIHYMKDRERGVVWEESIIFLP-PAIKMV 217 (955)
Q Consensus 156 -------~----~~~~IlV~Tpe~L~~~l~~~~~----~l~--~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~-~~~~~v 217 (955)
+ ..++|+|+||+.+...+..+.. .+. ..++|||||+|.+.+..++. +..++..++ .+.|++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEE
Confidence 0 1367999999999877665211 011 23799999999999875555 444444443 578999
Q ss_pred EeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCcc
Q 002183 218 FLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRE 297 (955)
Q Consensus 218 ~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 297 (955)
++|||+| ..+.+|+......+.. ......+.... ....+.......
T Consensus 160 ~~SATlp--~~l~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~------------------------ 205 (358)
T TIGR01587 160 LMSATLP--KFLKEYAEKIGYVEFN---EPLDLKEERRF-----ERHRFIKIESDK------------------------ 205 (358)
T ss_pred EEecCch--HHHHHHHhcCCCcccc---cCCCCcccccc-----ccccceeecccc------------------------
Confidence 9999998 3455666543211100 00000000000 000000000000
Q ss_pred CCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccc
Q 002183 298 NGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEE 377 (955)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~ 377 (955)
......+..++..+ ....++||||++++.|+.++..|.+.+..
T Consensus 206 -------------~~~~~~l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~~~---------------------- 248 (358)
T TIGR01587 206 -------------VGEISSLERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENAPE---------------------- 248 (358)
T ss_pred -------------ccCHHHHHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhcCC----------------------
Confidence 00011122233222 23579999999999999999999764332
Q ss_pred cCCchhHHhHHHHhhcCeEeecCCCCHHHHHHH----HHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCc
Q 002183 378 DRNLPAIELMLPLLKRGIAVHHSGLLPVIKELV----ELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHR 453 (955)
Q Consensus 378 d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v----~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~ 453 (955)
..+..+||++++.+|..+ ++.|++|..+|||||+++++|||+| .++|| .++.
T Consensus 249 ---------------~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi----~~~~---- 304 (358)
T TIGR01587 249 ---------------EEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMI----TELA---- 304 (358)
T ss_pred ---------------CeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEE----EcCC----
Confidence 137899999999999764 7889999999999999999999997 45556 3333
Q ss_pred ccCHHHHHHHhccCCCCCCCC--ceEEEEEeCCc
Q 002183 454 YIGSGEYIQMSGRAGRRGKDD--RGICIIMVDEQ 485 (955)
Q Consensus 454 ~~s~~ey~Q~~GRaGR~G~~~--~g~~ii~~~~~ 485 (955)
++.+|+||+||+||.|+.. .|.++++....
T Consensus 305 --~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 305 --PIDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred --CHHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 4789999999999998753 35777776443
No 68
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=6e-32 Score=319.13 Aligned_cols=309 Identities=16% Similarity=0.162 Sum_probs=210.3
Q ss_pred HHHHHHHHHHhcCCcEEEEcCCCCchHHH---------HHHHHHHHH---h---cCCeEEEEccChhhHHHHHHHHHHhc
Q 002183 79 PFQRVSVACLERNESVLVSAHTSAGKTAV---------AEYAIAMAF---R---DKQRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 79 ~~Q~~ai~~l~~g~~vlv~apTGsGKTl~---------~~~~i~~~l---~---~~~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
.+|.++++.+.+|++++++|+||||||.+ |+++.+..+ . .+.++++++||++|+.|...++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 56889999999999999999999999997 333333333 2 35689999999999999999998754
Q ss_pred C-------CeeEEeccccc------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC
Q 002183 144 K-------DVGLMTGDVTL------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (955)
Q Consensus 144 ~-------~vg~~tGd~~~------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l 210 (955)
+ .+.+..|+.+. ....+|+|+|+... ...++++++||+||||.+... +.....++..+
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~--~DllL~llk~~ 317 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQI--GDIIIAVARKH 317 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccc--hhHHHHHHHHh
Confidence 4 35667787642 12468999997531 124789999999999998765 44554455443
Q ss_pred -CCcceEEEeccccCC-hHHHHHHHhhhcCCCeEEEecCCC-cccceEEEeecCCCceEEeecccchhchhhHHHHHHHH
Q 002183 211 -PPAIKMVFLSATMSN-ATQFAEWICHLHKQPCHVVYTDFR-PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTF 287 (955)
Q Consensus 211 -~~~~~~v~lSAT~~n-~~~~~~~l~~~~~~~~~v~~~~~r-p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (955)
+...|+++||||++. ...+.+|++ ++..+.. ..+ ..|++++...... ..... ..+..
T Consensus 318 ~~~~rq~ILmSATl~~dv~~l~~~~~----~p~~I~I-~grt~~pV~~~yi~~~~-------~~~~~---~~y~~----- 377 (675)
T PHA02653 318 IDKIRSLFLMTATLEDDRDRIKEFFP----NPAFVHI-PGGTLFPISEVYVKNKY-------NPKNK---RAYIE----- 377 (675)
T ss_pred hhhcCEEEEEccCCcHhHHHHHHHhc----CCcEEEe-CCCcCCCeEEEEeecCc-------ccccc---hhhhH-----
Confidence 334599999999984 345555543 3444433 333 2455543321110 00000 00000
Q ss_pred HHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHH---HcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHH
Q 002183 288 LKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIM---ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVE 364 (955)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~ 364 (955)
.....++..+. ....+++|||++++.+|+.++..|.+...
T Consensus 378 ---------------------------~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~---------- 420 (675)
T PHA02653 378 ---------------------------EEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP---------- 420 (675)
T ss_pred ---------------------------HHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC----------
Confidence 00011222222 22346899999999999999999976310
Q ss_pred HHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHH-hcCCccEEEEcccccccCCCCCcEEEEec
Q 002183 365 QVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLF-QEGLVKALFATETFAMGLNMPAKTVVFTA 443 (955)
Q Consensus 365 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F-~~g~i~VLvaT~~la~Gidip~~~vVi~~ 443 (955)
...+..+||+|++. +.+++.| ++|..+|||||+++++|||+|++++||++
T Consensus 421 ---------------------------~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 421 ---------------------------IYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred ---------------------------CceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEEC
Confidence 01267899999975 4566666 78999999999999999999999999966
Q ss_pred ceeccCC----CCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 444 VKKWDGD----SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 444 ~~~~d~~----~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
+..+.+. ...+.|.++|.||+|||||.+ .|.|+.++++.
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~---~G~c~rLyt~~ 514 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS---PGTYVYFYDLD 514 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCCC---CCeEEEEECHH
Confidence 5221111 234669999999999999994 49999998765
No 69
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.4e-31 Score=334.20 Aligned_cols=271 Identities=18% Similarity=0.140 Sum_probs=189.6
Q ss_pred hhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC---
Q 002183 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--- 144 (955)
Q Consensus 68 ~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~--- 144 (955)
-+.+.+||+|+++|+.+++.+..|+|++++||||+|||..++.++.....++.+++|++||++|+.|+++.++.++.
T Consensus 72 ~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~ 151 (1176)
T PRK09401 72 FFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVG 151 (1176)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcC
Confidence 45567799999999999999999999999999999999754443333334688999999999999999999999876
Q ss_pred -CeeEEeccccc-------------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCC-----------CC
Q 002183 145 -DVGLMTGDVTL-------------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR-----------ER 199 (955)
Q Consensus 145 -~vg~~tGd~~~-------------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~-----------~r 199 (955)
.+..++|+... +.+++|+|+||++|.+.+. ......++++|+||||.+.++ +|
T Consensus 152 ~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF 229 (1176)
T PRK09401 152 CGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGF 229 (1176)
T ss_pred ceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCC
Confidence 34445554321 2458999999999998765 233456999999999999974 34
Q ss_pred h-HHHHHHHHhCCC------------------------cceEEEeccccCCh-HHHHHHHhhhcCCCeEEEecCCCcccc
Q 002183 200 G-VVWEESIIFLPP------------------------AIKMVFLSATMSNA-TQFAEWICHLHKQPCHVVYTDFRPTPL 253 (955)
Q Consensus 200 g-~~~~~ii~~l~~------------------------~~~~v~lSAT~~n~-~~~~~~l~~~~~~~~~v~~~~~rp~pl 253 (955)
. ..++.++..++. ..|++++|||.+.. ... ..+.. ...+....... .+
T Consensus 230 ~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~-~l~~~----ll~~~v~~~~~-~~ 303 (1176)
T PRK09401 230 SEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV-KLFRE----LLGFEVGSPVF-YL 303 (1176)
T ss_pred CHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH-HHhhc----cceEEecCccc-cc
Confidence 2 345555555543 68999999999742 211 11111 11111111100 00
Q ss_pred eEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEE
Q 002183 254 QHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVI 333 (955)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~I 333 (955)
. +..+.|...+ .....+...+... +.++|
T Consensus 304 r------nI~~~yi~~~--------------------------------------------~k~~~L~~ll~~l-~~~~L 332 (1176)
T PRK09401 304 R------NIVDSYIVDE--------------------------------------------DSVEKLVELVKRL-GDGGL 332 (1176)
T ss_pred C------CceEEEEEcc--------------------------------------------cHHHHHHHHHHhc-CCCEE
Confidence 0 0011111111 0111223333322 35799
Q ss_pred EEEcChHH---HHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHH
Q 002183 334 VFSFSRRE---CEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELV 410 (955)
Q Consensus 334 VF~~s~~~---~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v 410 (955)
|||+++.. |+.++..|...++. +..+||+| +. .
T Consensus 333 IFv~t~~~~~~ae~l~~~L~~~gi~---------------------------------------v~~~hg~l----~~-~ 368 (1176)
T PRK09401 333 IFVPSDKGKEYAEELAEYLEDLGIN---------------------------------------AELAISGF----ER-K 368 (1176)
T ss_pred EEEecccChHHHHHHHHHHHHCCCc---------------------------------------EEEEeCcH----HH-H
Confidence 99999877 99999999887765 67899999 22 3
Q ss_pred HHHHhcCCccEEEE----cccccccCCCCC-cEEEE
Q 002183 411 ELLFQEGLVKALFA----TETFAMGLNMPA-KTVVF 441 (955)
Q Consensus 411 ~~~F~~g~i~VLva----T~~la~Gidip~-~~vVi 441 (955)
++.|++|+++|||| |++++||||+|+ +.+||
T Consensus 369 l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI 404 (1176)
T PRK09401 369 FEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAI 404 (1176)
T ss_pred HHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEE
Confidence 49999999999999 689999999999 78888
No 70
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.4e-31 Score=287.17 Aligned_cols=365 Identities=21% Similarity=0.239 Sum_probs=241.9
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEEccChhhHHHHHHHHHHhcC----CeeEEe
Q 002183 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQEFK----DVGLMT 150 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l~PtkaLa~Q~~~~l~~~~~----~vg~~t 150 (955)
+++.+|.......+.+ |.+|+.|||-|||++|.+-++..+.. ++++|+++|||.|+.|..+.+++.++ .+..+|
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~lt 93 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALT 93 (542)
T ss_pred cHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeec
Confidence 5889998887766555 89999999999999999999888765 44799999999999999999999887 688999
Q ss_pred cccccCC------CCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccC
Q 002183 151 GDVTLSP------NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 151 Gd~~~~~------~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
|.+..+. ..+|+|+||+.+.|-+..+...+.++.++||||||+-....-...+..-+..-.++..+++||||+.
T Consensus 94 Gev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG 173 (542)
T COG1111 94 GEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPG 173 (542)
T ss_pred CCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCC
Confidence 9987653 6899999999999999999999999999999999998754333334444445567788999999998
Q ss_pred Ch-HHHHHHHhhhcCCCeEEEecCCCcccceEEEeec---------C----------------------CCceEEeecc-
Q 002183 225 NA-TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPV---------G----------------------GSGLYLVVDE- 271 (955)
Q Consensus 225 n~-~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~---------~----------------------~~~~~~~~~~- 271 (955)
+. +.+.+.+..+.-..+.+-..+. + .+..|+... + ..+++....+
T Consensus 174 s~~ekI~eV~~nLgIe~vevrTE~d-~-DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~ 251 (542)
T COG1111 174 SDLEKIQEVVENLGIEKVEVRTEED-P-DVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPV 251 (542)
T ss_pred CCHHHHHHHHHhCCcceEEEecCCC-c-cHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcc
Confidence 54 5566666655443333322211 1 001111000 0 0011111110
Q ss_pred --------------------cchhchhhHHHHH-------------------HHHHHhhccCCccCCCCCCCc-------
Q 002183 272 --------------------KEQFREDNFVKLQ-------------------DTFLKQKIGGRRENGKASGRM------- 305 (955)
Q Consensus 272 --------------------~~~~~~~~~~~~~-------------------~~l~~~~~~~~~~~~~~~~~~------- 305 (955)
...|..-.+.... ..+.+-.... ..+.++..+.
T Consensus 252 ~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~-~~~~sk~a~~l~~d~~~ 330 (542)
T COG1111 252 SKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEA-TKGGSKAAKSLLADPYF 330 (542)
T ss_pred cHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHh-cccchHHHHHHhcChhh
Confidence 0000000000000 0000000000 0000000000
Q ss_pred --------cCCCCCCCCCcHHHHHHHHH----HcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhh
Q 002183 306 --------AKGGSGSGGSDIFKIVKMIM----ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDC 373 (955)
Q Consensus 306 --------~~~~~~~~~~~~~~l~~~l~----~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~ 373 (955)
.........+++..+.+.+. +.+..++|||++.|..++.++..|.+.+....
T Consensus 331 ~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~---------------- 394 (542)
T COG1111 331 KRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR---------------- 394 (542)
T ss_pred HHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce----------------
Confidence 00001112333333333322 34567999999999999999999988655421
Q ss_pred cccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCc
Q 002183 374 LNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHR 453 (955)
Q Consensus 374 l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~ 453 (955)
..+...+-.-+..||++.++..+++.|++|..+|||||++.+.|+|+|+++.|| .|++
T Consensus 395 --------------~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVi----fYEp---- 452 (542)
T COG1111 395 --------------VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVI----FYEP---- 452 (542)
T ss_pred --------------eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEE----EecC----
Confidence 000111112345899999999999999999999999999999999999999999 8998
Q ss_pred ccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 454 YIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 454 ~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
..|+.-++||.||+||.- .|.++++..+.
T Consensus 453 vpSeIR~IQR~GRTGR~r---~Grv~vLvt~g 481 (542)
T COG1111 453 VPSEIRSIQRKGRTGRKR---KGRVVVLVTEG 481 (542)
T ss_pred CcHHHHHHHhhCccccCC---CCeEEEEEecC
Confidence 668899999999999973 47777777555
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.98 E-value=2.5e-31 Score=322.43 Aligned_cols=333 Identities=20% Similarity=0.266 Sum_probs=247.1
Q ss_pred chhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCC--eEEEEccChhhHHHHHHHHHHhc
Q 002183 66 NGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ--RVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 66 ~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~--~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
...+.+..+..|+.+|.+|+..+.+|+|++|+.+||||||.+|++||+..+.+++ ++||+.||+||++++.++|+++.
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~ 139 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELI 139 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHH
Confidence 4455555566699999999999999999999999999999999999999986654 66999999999999999998875
Q ss_pred C------CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCC----ccCCccceEEEEccccCCCCCChHHHHHH
Q 002183 144 K------DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGS----EVLKEVAWVIFDEIHYMKDRERGVVWEES 206 (955)
Q Consensus 144 ~------~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~----~~l~~l~~vIiDEaH~l~d~~rg~~~~~i 206 (955)
. .++.++||+.. ...++|+++||.+|..++.+.. ..++++++||+||+|.+.. -+|..+.-+
T Consensus 140 ~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG-v~GS~vA~l 218 (851)
T COG1205 140 SDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG-VQGSEVALL 218 (851)
T ss_pred HhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc-cchhHHHHH
Confidence 4 45678999864 3478999999999998665543 3467899999999998865 357666555
Q ss_pred HHh-------CCCcceEEEeccccCChHHHHHHHhhhcCCCeEE-EecCCCcccceEEEeecCCCceEEeecccchhchh
Q 002183 207 IIF-------LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHV-VYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFRED 278 (955)
Q Consensus 207 i~~-------l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v-~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (955)
+.. .+.+.|+|+.|||+.|..+++.-+.. ..... +..+..|....+++..... + .+...
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~---~~f~~~v~~~g~~~~~~~~~~~~p~--~--------~~~~~ 285 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFG---RDFEVPVDEDGSPRGLRYFVRREPP--I--------RELAE 285 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChHHHHHHhcC---CcceeeccCCCCCCCceEEEEeCCc--c--------hhhhh
Confidence 543 35689999999999999887766543 33444 6666667666665543210 0 00000
Q ss_pred hHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHH
Q 002183 279 NFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQE 358 (955)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~ 358 (955)
. ...+.......++..+.. ++.++|+|+.|++.++.+.......-...
T Consensus 286 ~-----------------------------~r~s~~~~~~~~~~~~~~-~~~~tL~F~~sr~~~e~~~~~~~~~~~~~-- 333 (851)
T COG1205 286 S-----------------------------IRRSALAELATLAALLVR-NGIQTLVFFRSRKQVELLYLSPRRRLVRE-- 333 (851)
T ss_pred h-----------------------------cccchHHHHHHHHHHHHH-cCceEEEEEehhhhhhhhhhchhHHHhhc--
Confidence 0 000112223334444443 45789999999999999875443310000
Q ss_pred HHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcE
Q 002183 359 EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKT 438 (955)
Q Consensus 359 e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~ 438 (955)
...+...|..|||+|.+.+|..++..|++|.+.++++|.++..|||+-+++
T Consensus 334 -----------------------------~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ld 384 (851)
T COG1205 334 -----------------------------GGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLD 384 (851)
T ss_pred -----------------------------chhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhh
Confidence 001223488999999999999999999999999999999999999999999
Q ss_pred EEEecceeccCCCCccc-CHHHHHHHhccCCCCCCCCceEEEEEeC
Q 002183 439 VVFTAVKKWDGDSHRYI-GSGEYIQMSGRAGRRGKDDRGICIIMVD 483 (955)
Q Consensus 439 vVi~~~~~~d~~~~~~~-s~~ey~Q~~GRaGR~G~~~~g~~ii~~~ 483 (955)
.||.. .. |. +..+++|++|||||+++ .+.+++...
T Consensus 385 avi~~----g~----P~~s~~~~~Q~~GRaGR~~~--~~l~~~v~~ 420 (851)
T COG1205 385 AVIAY----GY----PGVSVLSFRQRAGRAGRRGQ--ESLVLVVLR 420 (851)
T ss_pred hHhhc----CC----CCchHHHHHHhhhhccCCCC--CceEEEEeC
Confidence 99933 22 66 88999999999999996 455555554
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.98 E-value=6.4e-31 Score=294.70 Aligned_cols=285 Identities=18% Similarity=0.205 Sum_probs=191.7
Q ss_pred HHHHHHHHHhcCCc--EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC--------CeeEE
Q 002183 80 FQRVSVACLERNES--VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--------DVGLM 149 (955)
Q Consensus 80 ~Q~~ai~~l~~g~~--vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~--------~vg~~ 149 (955)
+|.++++++.++.+ ++++||||||||.+|++|++. .+.+++|++|+++|++|+++++++++. .++.+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~ 77 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHV 77 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEe
Confidence 59999999987764 788999999999999998874 466899999999999999999999872 34556
Q ss_pred eccccc---------------------------CCCCCEEEEeHHHHHHHHhcC-----C---ccCCccceEEEEccccC
Q 002183 150 TGDVTL---------------------------SPNASCLVMTTEILRGMLYRG-----S---EVLKEVAWVIFDEIHYM 194 (955)
Q Consensus 150 tGd~~~---------------------------~~~~~IlV~Tpe~L~~~l~~~-----~---~~l~~l~~vIiDEaH~l 194 (955)
+|+... ...+.|+++||+++..++.+. . .++.++++|||||+|.+
T Consensus 78 ~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~ 157 (357)
T TIGR03158 78 SKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLY 157 (357)
T ss_pred cCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccccc
Confidence 675211 124678888999998765432 1 13578999999999998
Q ss_pred CCCCChHHH-----HHHHHhCCCcceEEEeccccCChHHHHHHHhhh--cCCCeEEEecC------------------CC
Q 002183 195 KDRERGVVW-----EESIIFLPPAIKMVFLSATMSNATQFAEWICHL--HKQPCHVVYTD------------------FR 249 (955)
Q Consensus 195 ~d~~rg~~~-----~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~--~~~~~~v~~~~------------------~r 249 (955)
..+.....+ ..++.......+++++|||++. .+.+++... .+.++.++... +|
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~ 235 (357)
T TIGR03158 158 DAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP--ALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFR 235 (357)
T ss_pred CcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH--HHHHHHHhccccCceeeeecCcccccCCChhhhccccccccc
Confidence 864432222 2233333445799999999974 455555543 23333222222 11
Q ss_pred cc--cceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHc
Q 002183 250 PT--PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER 327 (955)
Q Consensus 250 p~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 327 (955)
|+ ++.+.+.+ ...+........ ...+.+.+...
T Consensus 236 ~~~~~i~~~~~~------------~~~~~~~~l~~l---------------------------------~~~i~~~~~~~ 270 (357)
T TIGR03158 236 PVLPPVELELIP------------APDFKEEELSEL---------------------------------AEEVIERFRQL 270 (357)
T ss_pred eeccceEEEEEe------------CCchhHHHHHHH---------------------------------HHHHHHHHhcc
Confidence 11 11111110 001110000000 01122222233
Q ss_pred CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHH
Q 002183 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (955)
Q Consensus 328 ~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R 407 (955)
...++||||+|++.|+.++..|...+... .+..+||.+++..|
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~-------------------------------------~~~~l~g~~~~~~R 313 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGD-------------------------------------DIGRITGFAPKKDR 313 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCc-------------------------------------eEEeeecCCCHHHH
Confidence 55789999999999999999998643221 25789999999988
Q ss_pred HHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCC
Q 002183 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAG 468 (955)
Q Consensus 408 ~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaG 468 (955)
+.+ +..+|||||+++++|||+|.+.+|+ + |.+...|+||+||+|
T Consensus 314 ~~~------~~~~iLVaTdv~~rGiDi~~~~vi~------~-----p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 314 ERA------MQFDILLGTSTVDVGVDFKRDWLIF------S-----ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHh------ccCCEEEEecHHhcccCCCCceEEE------C-----CCCHHHHhhhcccCC
Confidence 754 4789999999999999999875543 1 567889999999998
No 73
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=3e-31 Score=278.42 Aligned_cols=339 Identities=23% Similarity=0.288 Sum_probs=229.4
Q ss_pred hhhhhcCCCC--CCHHHHHHHHHH-hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhc
Q 002183 67 GEMAKTYSFE--LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 67 ~~~~~~~~f~--l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
..+.+.|||. -++.|.+|+.++ ..++||.|++|||+||+++|++|.+.+ ++.+||++|..||..++...+..+-
T Consensus 9 eaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~gITIV~SPLiALIkDQiDHL~~LK 85 (641)
T KOG0352|consen 9 EALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---GGITIVISPLIALIKDQIDHLKRLK 85 (641)
T ss_pred HHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---CCeEEEehHHHHHHHHHHHHHHhcC
Confidence 4566789988 589999999986 667899999999999999999997766 6799999999999999999998764
Q ss_pred CCeeEEecccc-------------cCCCCCEEEEeHHHHHHH----HhcCCccCCccceEEEEccccCCCCCCh--HHHH
Q 002183 144 KDVGLMTGDVT-------------LSPNASCLVMTTEILRGM----LYRGSEVLKEVAWVIFDEIHYMKDRERG--VVWE 204 (955)
Q Consensus 144 ~~vg~~tGd~~-------------~~~~~~IlV~Tpe~L~~~----l~~~~~~l~~l~~vIiDEaH~l~d~~rg--~~~~ 204 (955)
-++.-+.+..+ ..++..++..|||....- +.++-..-.-++|+|+||||++..|++. +.+-
T Consensus 86 Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL 165 (641)
T KOG0352|consen 86 VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYL 165 (641)
T ss_pred CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchh
Confidence 43333333221 245778999999975321 1111122345789999999999988533 3332
Q ss_pred HH--HHhCCCcceEEEeccccCCh--HHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhH
Q 002183 205 ES--IIFLPPAIKMVFLSATMSNA--TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNF 280 (955)
Q Consensus 205 ~i--i~~l~~~~~~v~lSAT~~n~--~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (955)
.+ +...-+++..++||||.+.. +++..-+. ..+|+-++.+..- ..++|+.+.-+ .+..+.|
T Consensus 166 ~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~--L~~PVAiFkTP~F------------R~NLFYD~~~K-~~I~D~~ 230 (641)
T KOG0352|consen 166 TLGSLRSVCPGVPWVALTATANAKVQEDIAFQLK--LRNPVAIFKTPTF------------RDNLFYDNHMK-SFITDCL 230 (641)
T ss_pred hhhhHHhhCCCCceEEeecccChhHHHHHHHHHh--hcCcHHhccCcch------------hhhhhHHHHHH-HHhhhHh
Confidence 22 22223578999999998643 22222222 2345554443211 11122211111 1111111
Q ss_pred HHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHH
Q 002183 281 VKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360 (955)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~ 360 (955)
..+.....+..+. +. + ...-.+.-.+-.||||.||..|+++|-.|...|.+.
T Consensus 231 ~~LaDF~~~~LG~-~~----------~-------------~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A---- 282 (641)
T KOG0352|consen 231 TVLADFSSSNLGK-HE----------K-------------ASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPA---- 282 (641)
T ss_pred HhHHHHHHHhcCC-hh----------h-------------hhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcch----
Confidence 1111111110000 00 0 000000112457999999999999999998766653
Q ss_pred HHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEE
Q 002183 361 DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440 (955)
Q Consensus 361 ~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vV 440 (955)
..||+||...+|..|.+.+.+|++.|++||..|+||||-|++..|
T Consensus 283 -----------------------------------~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFV 327 (641)
T KOG0352|consen 283 -----------------------------------MAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFV 327 (641)
T ss_pred -----------------------------------HHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEE
Confidence 468999999999999999999999999999999999999999999
Q ss_pred EecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhC
Q 002183 441 FTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLG 497 (955)
Q Consensus 441 i~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~ 497 (955)
| +||. +-+..-|+|.+|||||.|+ ..+|=+.++.. +...+.-++.+
T Consensus 328 i----HW~~----~qn~AgYYQESGRAGRDGk--~SyCRLYYsR~-D~~~i~FLi~~ 373 (641)
T KOG0352|consen 328 I----HWSP----SQNLAGYYQESGRAGRDGK--RSYCRLYYSRQ-DKNALNFLVSG 373 (641)
T ss_pred E----ecCc----hhhhHHHHHhccccccCCC--ccceeeeeccc-chHHHHHHHhh
Confidence 9 9999 8899999999999999998 57887777654 44444444433
No 74
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=6.3e-31 Score=315.87 Aligned_cols=328 Identities=20% Similarity=0.282 Sum_probs=249.3
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhc
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
....+...||+. ++|.|.+||..++.|++++|.+|||+||+++|++|.+.. ++-+||++|..+|+..+...+....
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---~gitvVISPL~SLm~DQv~~L~~~~ 328 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---GGVTVVISPLISLMQDQVTHLSKKG 328 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---CCceEEeccHHHHHHHHHHhhhhcC
Confidence 344556678988 999999999999999999999999999999999997665 6689999999999999999996655
Q ss_pred CCeeEEeccccc-------------CCCCCEEEEeHHHHHH--HHhcCCccCCc---cceEEEEccccCCCCC--ChHHH
Q 002183 144 KDVGLMTGDVTL-------------SPNASCLVMTTEILRG--MLYRGSEVLKE---VAWVIFDEIHYMKDRE--RGVVW 203 (955)
Q Consensus 144 ~~vg~~tGd~~~-------------~~~~~IlV~Tpe~L~~--~l~~~~~~l~~---l~~vIiDEaH~l~d~~--rg~~~ 203 (955)
-....+.++.+. ++..+|+..|||.+.. .+......+.. +.++|+||||++..|+ |.+.+
T Consensus 329 I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Y 408 (941)
T KOG0351|consen 329 IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSY 408 (941)
T ss_pred cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHH
Confidence 566667776543 2357899999998863 12211222334 8899999999999885 33444
Q ss_pred HHHH---HhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhH
Q 002183 204 EESI---IFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNF 280 (955)
Q Consensus 204 ~~ii---~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (955)
..+- +..+ .+++|+||||.+... -.+.+..+.-..+.++.+.+.+..+...+.+...
T Consensus 409 k~l~~l~~~~~-~vP~iALTATAT~~v-~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~------------------ 468 (941)
T KOG0351|consen 409 KRLGLLRIRFP-GVPFIALTATATERV-REDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTD------------------ 468 (941)
T ss_pred HHHHHHHhhCC-CCCeEEeehhccHHH-HHHHHHHhCCCCcceecccCCCCCceEEEEeccC------------------
Confidence 3332 2233 489999999986332 1244444444556666666665555444332110
Q ss_pred HHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHH-cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHH
Q 002183 281 VKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME-RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEE 359 (955)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e 359 (955)
......+...... ....+.||||.++..|+.++..|.+.+..
T Consensus 469 ---------------------------------~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~---- 511 (941)
T KOG0351|consen 469 ---------------------------------KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKS---- 511 (941)
T ss_pred ---------------------------------ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchh----
Confidence 1111222222222 25678999999999999999999987644
Q ss_pred HHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEE
Q 002183 360 KDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTV 439 (955)
Q Consensus 360 ~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~v 439 (955)
.+.||+||++.+|+.|...|..++++|+|||=+|+||||.|+|..
T Consensus 512 -----------------------------------a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ 556 (941)
T KOG0351|consen 512 -----------------------------------AAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRF 556 (941)
T ss_pred -----------------------------------hHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeE
Confidence 468999999999999999999999999999999999999999999
Q ss_pred EEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCC
Q 002183 440 VFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGK 498 (955)
Q Consensus 440 Vi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~ 498 (955)
|| +|.. |.+.+.|+|-+|||||.|. ...|+++++.. +...++.++...
T Consensus 557 Vi----H~~l----Pks~E~YYQE~GRAGRDG~--~s~C~l~y~~~-D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 557 VI----HYSL----PKSFEGYYQEAGRAGRDGL--PSSCVLLYGYA-DISELRRLLTSG 604 (941)
T ss_pred EE----ECCC----chhHHHHHHhccccCcCCC--cceeEEecchh-HHHHHHHHHHcc
Confidence 99 8888 9999999999999999999 57888888666 666777777665
No 75
>PRK13766 Hef nuclease; Provisional
Probab=99.97 E-value=1.9e-29 Score=313.15 Aligned_cols=365 Identities=21% Similarity=0.245 Sum_probs=234.3
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHHHHHhcC----Cee
Q 002183 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFK----DVG 147 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~vg 147 (955)
..+++++||.+++..+..+ +++|++|||+|||++|.+++...+. .++++||++||++|++|+.+.++..++ .+.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 4567999999999887776 8999999999999999998887763 478999999999999999999998875 577
Q ss_pred EEecccccC------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEecc
Q 002183 148 LMTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSA 221 (955)
Q Consensus 148 ~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSA 221 (955)
.++|+.+.. .+++|+|+||+++.+.+..+...+.++++|||||||++........+...+....+..++++|||
T Consensus 91 ~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTa 170 (773)
T PRK13766 91 VFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTA 170 (773)
T ss_pred EEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEc
Confidence 888886532 36799999999999887777777889999999999998754333333333444455678999999
Q ss_pred ccC-ChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccch--------------------------
Q 002183 222 TMS-NATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQ-------------------------- 274 (955)
Q Consensus 222 T~~-n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~-------------------------- 274 (955)
|+. +...+...+..+....+.+ .+...+ .+..++.... ..+..+.-...
T Consensus 171 TP~~~~~~i~~~~~~L~i~~v~~-~~~~~~-~v~~~~~~~~--v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~ 246 (773)
T PRK13766 171 SPGSDEEKIKEVCENLGIEHVEV-RTEDDP-DVKPYVHKVK--IEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIV 246 (773)
T ss_pred CCCCCHHHHHHHHHhCCceEEEE-cCCCCh-hHHhhhccce--eEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 985 3344555555443222222 111111 0111110000 00000000000
Q ss_pred -----hchhhHHHHHHHHHHh------------------------------------------hccCCccCCCCCC----
Q 002183 275 -----FREDNFVKLQDTFLKQ------------------------------------------KIGGRRENGKASG---- 303 (955)
Q Consensus 275 -----~~~~~~~~~~~~l~~~------------------------------------------~~~~~~~~~~~~~---- 303 (955)
.....+......+... ..... ...+...
T Consensus 247 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~-~~~~~~~~~~~ 325 (773)
T PRK13766 247 SISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA-RSSGGSKASKR 325 (773)
T ss_pred cCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc-cccCCcHHHHH
Confidence 0000000000000000 00000 0000000
Q ss_pred -----Cc---c--CCCCCCCCCcHHHHHHHHHH----cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Q 002183 304 -----RM---A--KGGSGSGGSDIFKIVKMIME----RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN 369 (955)
Q Consensus 304 -----~~---~--~~~~~~~~~~~~~l~~~l~~----~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~ 369 (955)
+. . -.......+++..+.+.+.+ .+..++||||.+++.|+.++..|...++....
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~----------- 394 (773)
T PRK13766 326 LVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVR----------- 394 (773)
T ss_pred HHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEE-----------
Confidence 00 0 00001112334444444433 46789999999999999999999765544210
Q ss_pred HHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccC
Q 002183 370 AVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449 (955)
Q Consensus 370 ~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~ 449 (955)
+. ..+...-|+||++.+|..++..|++|.++|||||+++++|+|+|++++|| .||.
T Consensus 395 ----~~----------------g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI----~yd~ 450 (773)
T PRK13766 395 ----FV----------------GQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVI----FYEP 450 (773)
T ss_pred ----EE----------------ccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEE----EeCC
Confidence 00 00000124569999999999999999999999999999999999999999 8998
Q ss_pred CCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 450 DSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 450 ~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
+.++..|+||+||+||.|. |.++++....
T Consensus 451 ----~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~ 479 (773)
T PRK13766 451 ----VPSEIRSIQRKGRTGRQEE---GRVVVLIAKG 479 (773)
T ss_pred ----CCCHHHHHHHhcccCcCCC---CEEEEEEeCC
Confidence 8899999999999999875 6666666443
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=2.1e-29 Score=295.78 Aligned_cols=330 Identities=14% Similarity=0.113 Sum_probs=214.0
Q ss_pred cCCCCCCHHHHHHHHHHh-cC--CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----
Q 002183 72 TYSFELDPFQRVSVACLE-RN--ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK---- 144 (955)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~-~g--~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~---- 144 (955)
+..++|+|+|++|+..+. +| ++.++++|||+|||++++.++... +.++||++|+..|+.||.++|.+++.
T Consensus 251 ~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---~k~tLILvps~~Lv~QW~~ef~~~~~l~~~ 327 (732)
T TIGR00603 251 KPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS 327 (732)
T ss_pred ccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc
Confidence 345789999999998875 44 478999999999999998776544 57899999999999999999999863
Q ss_pred CeeEEecccccC--CCCCEEEEeHHHHHHHHhcCC------ccC--CccceEEEEccccCCCCCChHHHHHHHHhCCCcc
Q 002183 145 DVGLMTGDVTLS--PNASCLVMTTEILRGMLYRGS------EVL--KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 214 (955)
Q Consensus 145 ~vg~~tGd~~~~--~~~~IlV~Tpe~L~~~l~~~~------~~l--~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~ 214 (955)
.++.++|+.... ...+|+|+|+.++.+...+.. ..+ ..+++||+||||++. ...+..++..+.. .
T Consensus 328 ~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~fr~il~~l~a-~ 402 (732)
T TIGR00603 328 QICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMFRRVLTIVQA-H 402 (732)
T ss_pred eEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHHHHHHHhcCc-C
Confidence 577788875432 247899999998864322211 112 468999999999996 4556667766653 4
Q ss_pred eEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccC
Q 002183 215 KMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGG 294 (955)
Q Consensus 215 ~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 294 (955)
..++||||+...++....+..+.+..++. .++.-.--..++.+.. ..-..+. +....+...+. ... .
T Consensus 403 ~RLGLTATP~ReD~~~~~L~~LiGP~vye--~~~~eLi~~G~LA~~~--~~ev~v~----~t~~~~~~yl~---~~~-~- 469 (732)
T TIGR00603 403 CKLGLTATLVREDDKITDLNFLIGPKLYE--ANWMELQKKGFIANVQ--CAEVWCP----MTPEFYREYLR---ENS-R- 469 (732)
T ss_pred cEEEEeecCcccCCchhhhhhhcCCeeee--cCHHHHHhCCccccce--EEEEEec----CCHHHHHHHHH---hcc-h-
Confidence 57999999974332222233222222211 1110000001111000 0000011 11111111100 000 0
Q ss_pred CccCCCCCCCccCCCCCCCCCcHHH---HHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHH
Q 002183 295 RRENGKASGRMAKGGSGSGGSDIFK---IVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAV 371 (955)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~ 371 (955)
........+..++.. +++... ..+.++||||.+...++.++..|.
T Consensus 470 ----------~k~~l~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~--------------------- 517 (732)
T TIGR00603 470 ----------KRMLLYVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLG--------------------- 517 (732)
T ss_pred ----------hhhHHhhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcC---------------------
Confidence 000000011122222 333222 356799999999999888887763
Q ss_pred hhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcC-CccEEEEcccccccCCCCCcEEEEecceeccCC
Q 002183 372 DCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEG-LVKALFATETFAMGLNMPAKTVVFTAVKKWDGD 450 (955)
Q Consensus 372 ~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g-~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~ 450 (955)
+.++||++++.+|+.+++.|++| .+++||+|+++++|||+|++++|| .+++
T Consensus 518 -----------------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI----~~s~- 569 (732)
T TIGR00603 518 -----------------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLI----QISS- 569 (732)
T ss_pred -----------------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEE----EeCC-
Confidence 34689999999999999999975 889999999999999999999999 6666
Q ss_pred CCcc-cCHHHHHHHhccCCCCCCCCc-----eEEEEEeCCc
Q 002183 451 SHRY-IGSGEYIQMSGRAGRRGKDDR-----GICIIMVDEQ 485 (955)
Q Consensus 451 ~~~~-~s~~ey~Q~~GRaGR~G~~~~-----g~~ii~~~~~ 485 (955)
| -|..+|+||+||++|.+.++. +..+.+++..
T Consensus 570 ---~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 570 ---HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred ---CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 4 489999999999999987655 3445555544
No 77
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=1.7e-29 Score=289.97 Aligned_cols=365 Identities=19% Similarity=0.256 Sum_probs=229.9
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh--cCCeEEEEccChhhHHHHHHHHHHhcC---CeeE
Q 002183 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEFK---DVGL 148 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~--~~~~vl~l~PtkaLa~Q~~~~l~~~~~---~vg~ 148 (955)
.++|+++|.+.+...+ |+++||++|||+|||.+|.+.+...++ .++++|+++|++-|++|+...+..++. ..+.
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~~ 138 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTGQ 138 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccceee
Confidence 4569999999997777 999999999999999999999999885 468999999999999999977766653 3344
Q ss_pred EecccccC------CCCCEEEEeHHHHHHHHhcCCcc-CCccceEEEEccccCCCCC-ChHHHHHHHHhCCCcceEEEec
Q 002183 149 MTGDVTLS------PNASCLVMTTEILRGMLYRGSEV-LKEVAWVIFDEIHYMKDRE-RGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 149 ~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~-l~~l~~vIiDEaH~l~d~~-rg~~~~~ii~~l~~~~~~v~lS 220 (955)
++|.+... ...+|+|+||+.|.+.|..+... +..+.++||||||+-.... +..++...+..-....|+++||
T Consensus 139 l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLT 218 (746)
T KOG0354|consen 139 LGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLT 218 (746)
T ss_pred ccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEe
Confidence 44434332 25799999999999999876532 5889999999999887433 3333333333323344999999
Q ss_pred cccCCh-HHHHHHHhhhcCCCeEEEe--c-----------CCCcccceE-----------EEee----cCCCceEEeecc
Q 002183 221 ATMSNA-TQFAEWICHLHKQPCHVVY--T-----------DFRPTPLQH-----------YVFP----VGGSGLYLVVDE 271 (955)
Q Consensus 221 AT~~n~-~~~~~~l~~~~~~~~~v~~--~-----------~~rp~pl~~-----------~~~~----~~~~~~~~~~~~ 271 (955)
||+++. .++.+.+..+.-. ..+.. + ..-|+++.. ++-+ ....+++...+.
T Consensus 219 ASpG~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~ 297 (746)
T KOG0354|consen 219 ASPGSKLEQVQNVIDNLCAS-LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDK 297 (746)
T ss_pred cCCCccHHHHHHHHHhhhee-cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccc
Confidence 999844 5666666544211 00000 0 001111100 0000 000011111110
Q ss_pred c---------------------ch--hchhhHHHHHHHHHHhhc-c-----------CCc-cCCC--C--C---------
Q 002183 272 K---------------------EQ--FREDNFVKLQDTFLKQKI-G-----------GRR-ENGK--A--S--------- 302 (955)
Q Consensus 272 ~---------------------~~--~~~~~~~~~~~~l~~~~~-~-----------~~~-~~~~--~--~--------- 302 (955)
. .. |....+......+..... . .+. ..++ . .
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~ 377 (746)
T KOG0354|consen 298 STSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFT 377 (746)
T ss_pred cccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHH
Confidence 0 00 111000000000000000 0 000 0000 0 0
Q ss_pred ------CCccCCCCCCCCCcHHHHHHHHHH----cCCCcEEEEEcChHHHHHHHHHhccC-CC--CCHHHHHHHHHHHHH
Q 002183 303 ------GRMAKGGSGSGGSDIFKIVKMIME----RKFQPVIVFSFSRRECEQHAMSMSKL-DF--NTQEEKDTVEQVFQN 369 (955)
Q Consensus 303 ------~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~IVF~~s~~~~~~la~~L~~~-~~--~~~~e~~~i~~~~~~ 369 (955)
......+ ......+..+.+.+.+ ....++|||+.+|..++.+...|.+. .+ .+.
T Consensus 378 ~~m~~~~~l~~~~-~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~------------ 444 (746)
T KOG0354|consen 378 ENMNELEHLSLDP-PKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAE------------ 444 (746)
T ss_pred HHHHhhhhhhcCC-CccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccc------------
Confidence 0000001 1234556666555544 35678999999999999999998741 11 110
Q ss_pred HHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccC
Q 002183 370 AVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449 (955)
Q Consensus 370 ~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~ 449 (955)
.+.+.|-+.--.||++.++..+++.|++|.++|||||+++++|+|+|.+++|| +||.
T Consensus 445 -------------------~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVI----cYd~ 501 (746)
T KOG0354|consen 445 -------------------IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVI----CYDY 501 (746)
T ss_pred -------------------eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEE----EecC
Confidence 01112222233699999999999999999999999999999999999999999 9999
Q ss_pred CCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCC
Q 002183 450 DSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 450 ~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~ 484 (955)
..++...+||.|| ||+-. |.++++.++
T Consensus 502 ----~snpIrmIQrrGR-gRa~n---s~~vll~t~ 528 (746)
T KOG0354|consen 502 ----SSNPIRMVQRRGR-GRARN---SKCVLLTTG 528 (746)
T ss_pred ----CccHHHHHHHhcc-ccccC---CeEEEEEcc
Confidence 6789999999999 99764 888888873
No 78
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=5.6e-31 Score=259.34 Aligned_cols=286 Identities=21% Similarity=0.296 Sum_probs=218.2
Q ss_pred cCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHHHHH---HHhcC
Q 002183 72 TYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYREL---HQEFK 144 (955)
Q Consensus 72 ~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~~~l---~~~~~ 144 (955)
-.||+ |+.+|.++||...-|.+++++|..|.|||.+|.++-++.+.. ...+++++.||+||-|+.+++ .++.+
T Consensus 59 dcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP 138 (387)
T KOG0329|consen 59 DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMP 138 (387)
T ss_pred hccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCC
Confidence 47999 999999999999999999999999999999999999998865 346899999999999996655 45555
Q ss_pred --CeeEEecccccCC-------CCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCC-CChHHHHHHHHhCCCcc
Q 002183 145 --DVGLMTGDVTLSP-------NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR-ERGVVWEESIIFLPPAI 214 (955)
Q Consensus 145 --~vg~~tGd~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~-~rg~~~~~ii~~l~~~~ 214 (955)
++.++.|+..+.. -++|+|+||+++..+..+.+..++++..+|+|||+.|+++ .......++..+.|...
T Consensus 139 ~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~K 218 (387)
T KOG0329|consen 139 SVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEK 218 (387)
T ss_pred CceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 6788999998754 5799999999999999999999999999999999988642 23455778899999999
Q ss_pred eEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccC
Q 002183 215 KMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGG 294 (955)
Q Consensus 215 ~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 294 (955)
|++++|||+++ ++.-....++.+|..++..+.....| ..+...+-.+.+..
T Consensus 219 Qvmmfsatlsk--eiRpvC~kFmQdPmEi~vDdE~KLtL------------------------HGLqQ~YvkLke~e--- 269 (387)
T KOG0329|consen 219 QVMMFSATLSK--EIRPVCHKFMQDPMEIFVDDEAKLTL------------------------HGLQQYYVKLKENE--- 269 (387)
T ss_pred eeeeeeeecch--hhHHHHHhhhcCchhhhccchhhhhh------------------------hhHHHHHHhhhhhh---
Confidence 99999999984 34455566666666666555433222 11111121121110
Q ss_pred CccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhc
Q 002183 295 RRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCL 374 (955)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 374 (955)
...++..+++. ....+++||+.|.....
T Consensus 270 ------------------KNrkl~dLLd~---LeFNQVvIFvKsv~Rl~------------------------------- 297 (387)
T KOG0329|consen 270 ------------------KNRKLNDLLDV---LEFNQVVIFVKSVQRLS------------------------------- 297 (387)
T ss_pred ------------------hhhhhhhhhhh---hhhcceeEeeehhhhhh-------------------------------
Confidence 01223344443 35678999998765410
Q ss_pred ccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcc
Q 002183 375 NEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY 454 (955)
Q Consensus 375 ~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~ 454 (955)
| ..+ +|||+.+++|+|+..+++|| +||. |
T Consensus 298 ---------------------------------------f---~kr-~vat~lfgrgmdiervNi~~----NYdm----p 326 (387)
T KOG0329|consen 298 ---------------------------------------F---QKR-LVATDLFGRGMDIERVNIVF----NYDM----P 326 (387)
T ss_pred ---------------------------------------h---hhh-hHHhhhhccccCcccceeee----ccCC----C
Confidence 2 124 89999999999999999999 9999 8
Q ss_pred cCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHH
Q 002183 455 IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTL 491 (955)
Q Consensus 455 ~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~ 491 (955)
-++..|.||+|||||.|. .|.+|.+.++..+...+
T Consensus 327 ~~~DtYlHrv~rAgrfGt--kglaitfvs~e~da~iL 361 (387)
T KOG0329|consen 327 EDSDTYLHRVARAGRFGT--KGLAITFVSDENDAKIL 361 (387)
T ss_pred CCchHHHHHhhhhhcccc--ccceeehhcchhhHHHh
Confidence 999999999999999998 57777777665444333
No 79
>PRK14701 reverse gyrase; Provisional
Probab=99.97 E-value=7e-30 Score=324.87 Aligned_cols=305 Identities=14% Similarity=0.110 Sum_probs=214.6
Q ss_pred chhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-
Q 002183 66 NGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK- 144 (955)
Q Consensus 66 ~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~- 144 (955)
..-+.+.+||+|+++|+++++.+.+|++++++||||+|||++++++.+....++.+++|++||++|+.|++..++.++.
T Consensus 69 ~~~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~ 148 (1638)
T PRK14701 69 EEFFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEK 148 (1638)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhh
Confidence 3344556899999999999999999999999999999999976666555555688999999999999999999998754
Q ss_pred -----CeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCC-----------
Q 002183 145 -----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR----------- 197 (955)
Q Consensus 145 -----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~----------- 197 (955)
.+..++|+.+. +.+++|+|+||++|.+.+.... ..+++++|+||||+|+++
T Consensus 149 ~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~--~~~i~~iVVDEAD~ml~~~knid~~L~ll 226 (1638)
T PRK14701 149 ANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK--HLKFDFIFVDDVDAFLKASKNIDRSLQLL 226 (1638)
T ss_pred cCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh--hCCCCEEEEECceeccccccccchhhhcC
Confidence 34557777642 2358999999999887654321 267999999999999874
Q ss_pred CChHHHHH----HHH----------------------hCCCcce-EEEeccccCChHHHHHHHhhhcCCCeEEEecCCCc
Q 002183 198 ERGVVWEE----SII----------------------FLPPAIK-MVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP 250 (955)
Q Consensus 198 ~rg~~~~~----ii~----------------------~l~~~~~-~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp 250 (955)
+|...... ++. .+++..| ++++|||.+...+...++. .+..+.....++
T Consensus 227 GF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~----~~l~f~v~~~~~ 302 (1638)
T PRK14701 227 GFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYR----ELLGFEVGSGRS 302 (1638)
T ss_pred CChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhh----cCeEEEecCCCC
Confidence 44444432 221 2344555 6779999986444444443 233333333332
Q ss_pred ccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCC
Q 002183 251 TPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQ 330 (955)
Q Consensus 251 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 330 (955)
+ +... .+.|...+.. ....++..+... +.
T Consensus 303 ~-lr~i------~~~yi~~~~~-------------------------------------------~k~~L~~ll~~~-g~ 331 (1638)
T PRK14701 303 A-LRNI------VDVYLNPEKI-------------------------------------------IKEHVRELLKKL-GK 331 (1638)
T ss_pred C-CCCc------EEEEEECCHH-------------------------------------------HHHHHHHHHHhC-CC
Confidence 2 1110 0111111110 001233333333 36
Q ss_pred cEEEEEcChHH---HHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHH
Q 002183 331 PVIVFSFSRRE---CEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (955)
Q Consensus 331 ~~IVF~~s~~~---~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R 407 (955)
++||||++++. |+.++..|...++. +..+||+ |
T Consensus 332 ~gIVF~~t~~~~e~ae~la~~L~~~Gi~---------------------------------------a~~~h~~-----R 367 (1638)
T PRK14701 332 GGLIFVPIDEGAEKAEEIEKYLLEDGFK---------------------------------------IELVSAK-----N 367 (1638)
T ss_pred CeEEEEeccccchHHHHHHHHHHHCCCe---------------------------------------EEEecch-----H
Confidence 79999999886 58999999887765 5788986 8
Q ss_pred HHHHHHHhcCCccEEEEc----ccccccCCCCC-cEEEEecceeccCCCCcccCHHHHHHH-------------hccCCC
Q 002183 408 ELVELLFQEGLVKALFAT----ETFAMGLNMPA-KTVVFTAVKKWDGDSHRYIGSGEYIQM-------------SGRAGR 469 (955)
Q Consensus 408 ~~v~~~F~~g~i~VLvaT----~~la~Gidip~-~~vVi~~~~~~d~~~~~~~s~~ey~Q~-------------~GRaGR 469 (955)
..+++.|++|.++||||| ++++||||+|+ +.+|| +||.+.++ .+.+.|.|- .|||||
T Consensus 368 ~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi----~~~~Pk~~-~~~e~~~~~~~~~~~~~~~~~~~~~a~~ 442 (1638)
T PRK14701 368 KKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAV----FYGVPKFR-FRVDLEDPTIYRILGLLSEILKIEEELK 442 (1638)
T ss_pred HHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEE----EeCCCCCC-cchhhcccchhhhhcchHHHHHhhhhcc
Confidence 899999999999999999 48999999999 89999 78885433 255555554 499999
Q ss_pred CCCCCce
Q 002183 470 RGKDDRG 476 (955)
Q Consensus 470 ~G~~~~g 476 (955)
.|....+
T Consensus 443 ~g~~~~~ 449 (1638)
T PRK14701 443 EGIPIEG 449 (1638)
T ss_pred cCCcchh
Confidence 9975444
No 80
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.97 E-value=1.9e-29 Score=315.58 Aligned_cols=272 Identities=16% Similarity=0.156 Sum_probs=186.8
Q ss_pred hhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhcCC
Q 002183 67 GEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (955)
Q Consensus 67 ~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~ 145 (955)
.-+....+++|+++|+.+++.+..|++++++||||+|||+ |.++++..+ ..+.+++|++||++|+.|+++.++.++..
T Consensus 69 ~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~ 147 (1171)
T TIGR01054 69 EFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEK 147 (1171)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHh
Confidence 3445567889999999999999999999999999999997 445554443 45789999999999999999999987752
Q ss_pred -------eeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCC----------
Q 002183 146 -------VGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR---------- 197 (955)
Q Consensus 146 -------vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~---------- 197 (955)
++.++|+.+. +.+++|+|+||++|...+.+.. .+++++|+||||.|.+.
T Consensus 148 ~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~~~~~iVvDEaD~~L~~~k~vd~il~l 224 (1171)
T TIGR01054 148 AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---PKFDFIFVDDVDALLKASKNVDKLLKL 224 (1171)
T ss_pred cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---CCCCEEEEeChHhhhhccccHHHHHHH
Confidence 3456787643 2358999999999987765422 18999999999999984
Q ss_pred -CChH-HHHHH----------------------HHhCCCcce--EEEeccc-cCChHHHHHHHhhhcCCCeEEEecCCCc
Q 002183 198 -ERGV-VWEES----------------------IIFLPPAIK--MVFLSAT-MSNATQFAEWICHLHKQPCHVVYTDFRP 250 (955)
Q Consensus 198 -~rg~-~~~~i----------------------i~~l~~~~~--~v~lSAT-~~n~~~~~~~l~~~~~~~~~v~~~~~rp 250 (955)
+|.. .++.+ +..+++..| ++++||| .|.... ..++. ....+......
T Consensus 225 lGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~-~~l~r----~ll~~~v~~~~- 298 (1171)
T TIGR01054 225 LGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR-AKLFR----ELLGFEVGGGS- 298 (1171)
T ss_pred cCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH-HHHcc----cccceEecCcc-
Confidence 3433 23332 223445544 6778999 443211 11111 11111111111
Q ss_pred ccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCC
Q 002183 251 TPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQ 330 (955)
Q Consensus 251 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 330 (955)
..+.+.. +.|...+. ....+...+... +.
T Consensus 299 ~~~r~I~------~~~~~~~~--------------------------------------------~~~~L~~ll~~l-~~ 327 (1171)
T TIGR01054 299 DTLRNVV------DVYVEDED--------------------------------------------LKETLLEIVKKL-GT 327 (1171)
T ss_pred ccccceE------EEEEeccc--------------------------------------------HHHHHHHHHHHc-CC
Confidence 1111100 11111000 011223333332 35
Q ss_pred cEEEEEcCh---HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHH
Q 002183 331 PVIVFSFSR---RECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (955)
Q Consensus 331 ~~IVF~~s~---~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R 407 (955)
++||||+++ +.|+.++..|...++. +..+||+++
T Consensus 328 ~~IVFv~t~~~~~~a~~l~~~L~~~g~~---------------------------------------a~~lhg~~~---- 364 (1171)
T TIGR01054 328 GGIVYVSIDYGKEKAEEIAEFLENHGVK---------------------------------------AVAYHATKP---- 364 (1171)
T ss_pred CEEEEEeccccHHHHHHHHHHHHhCCce---------------------------------------EEEEeCCCC----
Confidence 799999999 9999999999876654 678999996
Q ss_pred HHHHHHHhcCCccEEEE----cccccccCCCCC-cEEEEe
Q 002183 408 ELVELLFQEGLVKALFA----TETFAMGLNMPA-KTVVFT 442 (955)
Q Consensus 408 ~~v~~~F~~g~i~VLva----T~~la~Gidip~-~~vVi~ 442 (955)
+.+++.|++|+++|||| |++++||||+|+ +++||.
T Consensus 365 ~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~ 404 (1171)
T TIGR01054 365 KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVF 404 (1171)
T ss_pred HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEE
Confidence 36889999999999999 589999999999 788884
No 81
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=2e-29 Score=309.45 Aligned_cols=315 Identities=21% Similarity=0.276 Sum_probs=216.6
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHH-HHHHhcC--CeEEEEccC----hhhHHHHHHHHHHhcC-CeeE
Q 002183 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAI-AMAFRDK--QRVIYTSPL----KALSNQKYRELHQEFK-DVGL 148 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i-~~~l~~~--~~vl~l~Pt----kaLa~Q~~~~l~~~~~-~vg~ 148 (955)
...+-.+.+.++..++.++|+|+||||||. .+|. +..+..+ ++++++.|. ++||.|+..++....+ .||.
T Consensus 75 i~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY 152 (1294)
T PRK11131 75 VSQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGY 152 (1294)
T ss_pred HHHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece
Confidence 355566677888888899999999999999 4663 3333333 467778885 5888888888876444 5665
Q ss_pred Ee-cccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccc-cCCCCCChHHHHHHHHhCC--CcceEEEeccccC
Q 002183 149 MT-GDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH-YMKDRERGVVWEESIIFLP--PAIKMVFLSATMS 224 (955)
Q Consensus 149 ~t-Gd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH-~l~d~~rg~~~~~ii~~l~--~~~~~v~lSAT~~ 224 (955)
-+ .+.....+++|+||||++|...+..+. .++++++||||||| ++.+.++-.. .+...++ ++.|+|++|||++
T Consensus 153 ~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg--~Lk~lL~~rpdlKvILmSATid 229 (1294)
T PRK11131 153 KVRFNDQVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILG--YLKELLPRRPDLKVIITSATID 229 (1294)
T ss_pred eecCccccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHH--HHHHhhhcCCCceEEEeeCCCC
Confidence 33 233445678999999999999887654 48999999999999 5777654432 2222232 4689999999995
Q ss_pred ChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCC
Q 002183 225 NATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGR 304 (955)
Q Consensus 225 n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 304 (955)
...|++++. +.++ +....+..|++.+..+.. ..........+
T Consensus 230 -~e~fs~~F~---~apv--I~V~Gr~~pVei~y~p~~--------~~~~~~~~d~l------------------------ 271 (1294)
T PRK11131 230 -PERFSRHFN---NAPI--IEVSGRTYPVEVRYRPIV--------EEADDTERDQL------------------------ 271 (1294)
T ss_pred -HHHHHHHcC---CCCE--EEEcCccccceEEEeecc--------cccchhhHHHH------------------------
Confidence 556666553 2333 333344445443322111 00000000000
Q ss_pred ccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhH
Q 002183 305 MAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAI 384 (955)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~ 384 (955)
..+...+..+.....+.+|||++++.+++.++..|...++..
T Consensus 272 ----------~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~---------------------------- 313 (1294)
T PRK11131 272 ----------QAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRH---------------------------- 313 (1294)
T ss_pred ----------HHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCc----------------------------
Confidence 011122222333456789999999999999999998755432
Q ss_pred HhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecc----eeccCCC------Ccc
Q 002183 385 ELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV----KKWDGDS------HRY 454 (955)
Q Consensus 385 ~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~----~~~d~~~------~~~ 454 (955)
..|..+||+|++.+|..++.. .|..+|||||+++++|||+|++++||++. ..||... ..|
T Consensus 314 --------~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~ 383 (1294)
T PRK11131 314 --------TEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEP 383 (1294)
T ss_pred --------ceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeee
Confidence 126789999999999999875 58899999999999999999999999764 3455532 235
Q ss_pred cCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 455 IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 455 ~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
.|.++|.||+|||||.+ .|+||.++++.
T Consensus 384 iSkasa~QRaGRAGR~~---~G~c~rLyte~ 411 (1294)
T PRK11131 384 ISQASANQRKGRCGRVS---EGICIRLYSED 411 (1294)
T ss_pred cCHhhHhhhccccCCCC---CcEEEEeCCHH
Confidence 67789999999999995 49999998764
No 82
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1.2e-27 Score=270.72 Aligned_cols=315 Identities=20% Similarity=0.299 Sum_probs=226.9
Q ss_pred CchhhhhcCCCCCCHHHHHHHHHHhcC------CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHH
Q 002183 65 YNGEMAKTYSFELDPFQRVSVACLERN------ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~ 138 (955)
....+....||+||..|++++.-|..+ .+=++++..|||||+||.++++.++..|.++..++||--||.|-|+.
T Consensus 251 l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 251 LLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYES 330 (677)
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHH
Confidence 456777889999999999999988543 46799999999999999999999999999999999999999999999
Q ss_pred HHHhcC----CeeEEecccc-----------cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHH
Q 002183 139 LHQEFK----DVGLMTGDVT-----------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (955)
Q Consensus 139 l~~~~~----~vg~~tGd~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~ 203 (955)
+.++++ .|+++||... .+.+.+|+|+|.--+ .....+.++.+||+||-|+. |+.-
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQHRF-----GV~Q 400 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQHRF-----GVHQ 400 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEeccccc-----cHHH
Confidence 999998 4888999775 245799999997544 44556899999999999965 6555
Q ss_pred HHHHHhCCC-cceEEEecccc-CChHHHHHHHhhhcCCCeEEEec-CCCcccceEEEeecCCCceEEeecccchhchhhH
Q 002183 204 EESIIFLPP-AIKMVFLSATM-SNATQFAEWICHLHKQPCHVVYT-DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNF 280 (955)
Q Consensus 204 ~~ii~~l~~-~~~~v~lSAT~-~n~~~~~~~l~~~~~~~~~v~~~-~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (955)
...+..-.. ...++.||||+ |..-.+..+-. -.+.++.. ..-..|+..++.+.
T Consensus 401 R~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgD----ldvS~IdElP~GRkpI~T~~i~~-------------------- 456 (677)
T COG1200 401 RLALREKGEQNPHVLVMTATPIPRTLALTAFGD----LDVSIIDELPPGRKPITTVVIPH-------------------- 456 (677)
T ss_pred HHHHHHhCCCCCcEEEEeCCCchHHHHHHHhcc----ccchhhccCCCCCCceEEEEecc--------------------
Confidence 555555555 57899999997 43322222211 11111111 11223444443321
Q ss_pred HHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHc--CCCcEEEEEcChHHHHHHHHHhccCCCCCHH
Q 002183 281 VKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER--KFQPVIVFSFSRRECEQHAMSMSKLDFNTQE 358 (955)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~ 358 (955)
.....+++.+.+. .+.++.|.|+-..+.+.+- +. +.
T Consensus 457 ----------------------------------~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~--l~-----~a- 494 (677)
T COG1200 457 ----------------------------------ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLE--LQ-----AA- 494 (677)
T ss_pred ----------------------------------ccHHHHHHHHHHHHHcCCEEEEEeccccccccch--hh-----hH-
Confidence 1111222222221 4578999999877666322 00 00
Q ss_pred HHHHHHHHHHHHHhhcccccCCchhHHhHHH-HhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCc
Q 002183 359 EKDTVEQVFQNAVDCLNEEDRNLPAIELMLP-LLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAK 437 (955)
Q Consensus 359 e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~-~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~ 437 (955)
...++ .+.. +-...|+.+||.|++.+|+.|+..|++|+++|||||.+.+.|||+|+.
T Consensus 495 -----~~~~~-----------------~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnA 552 (677)
T COG1200 495 -----EELYE-----------------ELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNA 552 (677)
T ss_pred -----HHHHH-----------------HHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCC
Confidence 00000 0011 112348999999999999999999999999999999999999999999
Q ss_pred EEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcc
Q 002183 438 TVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQM 486 (955)
Q Consensus 438 ~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~ 486 (955)
+++| -+|.. -...+...|..||.||.+. .++|++++.+..
T Consensus 553 TvMV----Ie~AE---RFGLaQLHQLRGRVGRG~~--qSyC~Ll~~~~~ 592 (677)
T COG1200 553 TVMV----IENAE---RFGLAQLHQLRGRVGRGDL--QSYCVLLYKPPL 592 (677)
T ss_pred eEEE----Eechh---hhhHHHHHHhccccCCCCc--ceEEEEEeCCCC
Confidence 9866 33332 3455789999999999887 699999998775
No 83
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=1e-27 Score=295.72 Aligned_cols=315 Identities=19% Similarity=0.222 Sum_probs=218.2
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHH-Hh--cCCeEEEEccChhhHHHHHHHHHHhcC-CeeEEec--
Q 002183 78 DPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMA-FR--DKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTG-- 151 (955)
Q Consensus 78 ~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~-l~--~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~tG-- 151 (955)
.....+.+..+..++.++|+|+||||||.. +|.+.. .. ..++++++.|.|--+..+.+.+.+.++ .+|...|
T Consensus 69 ~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 69 SAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 344456677788888999999999999995 453322 12 234788899999888888888877766 5555444
Q ss_pred ---ccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccc-cCCCCCChHH-HHHHHHhCCCcceEEEeccccCCh
Q 002183 152 ---DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH-YMKDRERGVV-WEESIIFLPPAIKMVFLSATMSNA 226 (955)
Q Consensus 152 ---d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH-~l~d~~rg~~-~~~ii~~l~~~~~~v~lSAT~~n~ 226 (955)
+...+++..|.|||+++|..++.... .+.++++||||||| +..+.++... +..++. ..++.++|+||||++ .
T Consensus 147 vR~~~~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~-~rpdLKlIlmSATld-~ 223 (1283)
T TIGR01967 147 VRFHDQVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP-RRPDLKIIITSATID-P 223 (1283)
T ss_pred EcCCcccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHh-hCCCCeEEEEeCCcC-H
Confidence 33456678999999999999887654 58999999999999 5777655543 333332 345789999999995 5
Q ss_pred HHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCcc
Q 002183 227 TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMA 306 (955)
Q Consensus 227 ~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 306 (955)
..|+++++. .+ ++....+..|+..+..+.. ........++
T Consensus 224 ~~fa~~F~~---ap--vI~V~Gr~~PVev~Y~~~~---------~~~~~~~~~~-------------------------- 263 (1283)
T TIGR01967 224 ERFSRHFNN---AP--IIEVSGRTYPVEVRYRPLV---------EEQEDDDLDQ-------------------------- 263 (1283)
T ss_pred HHHHHHhcC---CC--EEEECCCcccceeEEeccc---------ccccchhhhH--------------------------
Confidence 677777642 23 3333444444443221110 0000000000
Q ss_pred CCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHh
Q 002183 307 KGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIEL 386 (955)
Q Consensus 307 ~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~ 386 (955)
...+...+..+.....+.+|||++++.+++.++..|.+.++..
T Consensus 264 -------~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~------------------------------ 306 (1283)
T TIGR01967 264 -------LEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRH------------------------------ 306 (1283)
T ss_pred -------HHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCC------------------------------
Confidence 0112223333333455789999999999999999997643321
Q ss_pred HHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecc----eeccCCC------CcccC
Q 002183 387 MLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV----KKWDGDS------HRYIG 456 (955)
Q Consensus 387 ~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~----~~~d~~~------~~~~s 456 (955)
..|..+||+|++.+|..++..+ +..+||+||+++++|||+|++++||++. ..||... ..+.|
T Consensus 307 ------~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~IS 378 (1283)
T TIGR01967 307 ------TEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPIS 378 (1283)
T ss_pred ------cEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCC
Confidence 1267899999999999985543 3479999999999999999999999765 2455432 24668
Q ss_pred HHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 457 SGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 457 ~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
.++|.||+|||||.| .|+||.++++.
T Consensus 379 kasa~QRaGRAGR~~---~G~cyRLyte~ 404 (1283)
T TIGR01967 379 QASANQRKGRCGRVA---PGICIRLYSEE 404 (1283)
T ss_pred HHHHHHHhhhhCCCC---CceEEEecCHH
Confidence 899999999999998 49999998764
No 84
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=6.7e-28 Score=249.30 Aligned_cols=312 Identities=20% Similarity=0.277 Sum_probs=230.4
Q ss_pred hhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCe
Q 002183 68 EMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDV 146 (955)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~v 146 (955)
.+...|..+ ++|.|..+|.+...|+++++..|||.||+++|.+|.+-+ ++-+++++|...|+.++.-.++.++-+.
T Consensus 85 ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---dg~alvi~plislmedqil~lkqlgi~a 161 (695)
T KOG0353|consen 85 ILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---DGFALVICPLISLMEDQILQLKQLGIDA 161 (695)
T ss_pred HHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---CCceEeechhHHHHHHHHHHHHHhCcch
Confidence 344566666 999999999999999999999999999999999997665 7889999999999999999999887655
Q ss_pred eEEecccc-------------cCCCCCEEEEeHHHHHH---HHhc--CCccCCccceEEEEccccCCCCCC--hHHHH--
Q 002183 147 GLMTGDVT-------------LSPNASCLVMTTEILRG---MLYR--GSEVLKEVAWVIFDEIHYMKDRER--GVVWE-- 204 (955)
Q Consensus 147 g~~tGd~~-------------~~~~~~IlV~Tpe~L~~---~l~~--~~~~l~~l~~vIiDEaH~l~d~~r--g~~~~-- 204 (955)
..+....+ -+....++..|||.+.. ++.+ .......+.++-+||+|+-..|+. .+.+.
T Consensus 162 s~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l 241 (695)
T KOG0353|consen 162 SMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKAL 241 (695)
T ss_pred hhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHH
Confidence 44444332 12356789999998753 2221 123355678999999999998753 33333
Q ss_pred HHHHhCCCcceEEEeccccCCh--HHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHH
Q 002183 205 ESIIFLPPAIKMVFLSATMSNA--TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK 282 (955)
Q Consensus 205 ~ii~~l~~~~~~v~lSAT~~n~--~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (955)
.++...-++.++++|+||..|. .+..+.++- ..+..+...+....|.. .+..+.
T Consensus 242 ~ilkrqf~~~~iigltatatn~vl~d~k~il~i---e~~~tf~a~fnr~nl~y------------ev~qkp--------- 297 (695)
T KOG0353|consen 242 GILKRQFKGAPIIGLTATATNHVLDDAKDILCI---EAAFTFRAGFNRPNLKY------------EVRQKP--------- 297 (695)
T ss_pred HHHHHhCCCCceeeeehhhhcchhhHHHHHHhH---HhhheeecccCCCCcee------------EeeeCC---------
Confidence 2344444688999999998765 344444432 12334444433332322 111110
Q ss_pred HHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHH-cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHH
Q 002183 283 LQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME-RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKD 361 (955)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~ 361 (955)
......+..+.+.+.. ..+...||||+|++.|+.++..|..+|..
T Consensus 298 ----------------------------~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~------ 343 (695)
T KOG0353|consen 298 ----------------------------GNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIH------ 343 (695)
T ss_pred ----------------------------CChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCcc------
Confidence 0111223333333332 24567899999999999999999998776
Q ss_pred HHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEE
Q 002183 362 TVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441 (955)
Q Consensus 362 ~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi 441 (955)
.+.+|+.|.|++|..+-+.+..|++.|+|||-+|+||||-|++..||
T Consensus 344 ---------------------------------a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvi 390 (695)
T KOG0353|consen 344 ---------------------------------AGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVI 390 (695)
T ss_pred ---------------------------------ccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEE
Confidence 36899999999999999999999999999999999999999999999
Q ss_pred ecceeccCCCCcccCHHHHHH-------------------------------------------HhccCCCCCCCCceEE
Q 002183 442 TAVKKWDGDSHRYIGSGEYIQ-------------------------------------------MSGRAGRRGKDDRGIC 478 (955)
Q Consensus 442 ~~~~~~d~~~~~~~s~~ey~Q-------------------------------------------~~GRaGR~G~~~~g~~ 478 (955)
++.. |.+.+.|.| .+|||||.|. .+.|
T Consensus 391 ----hhsl----~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~--~a~c 460 (695)
T KOG0353|consen 391 ----HHSL----PKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDM--KADC 460 (695)
T ss_pred ----eccc----chhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCC--cccE
Confidence 5555 889999999 7899999988 5778
Q ss_pred EEEeC
Q 002183 479 IIMVD 483 (955)
Q Consensus 479 ii~~~ 483 (955)
|+.+.
T Consensus 461 ilyy~ 465 (695)
T KOG0353|consen 461 ILYYG 465 (695)
T ss_pred EEEec
Confidence 87764
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=7.3e-27 Score=281.02 Aligned_cols=355 Identities=19% Similarity=0.141 Sum_probs=215.5
Q ss_pred cCCCCCCHHHHHHHHHHhc---CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-Cee
Q 002183 72 TYSFELDPFQRVSVACLER---NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVG 147 (955)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~---g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg 147 (955)
..+++|++.|++|++.+.. +.++++.|+||||||.+|+.++...+..|.++||++|+++|+.|+++.|++.|+ .+.
T Consensus 140 ~~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~ 219 (679)
T PRK05580 140 FEPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVA 219 (679)
T ss_pred cCCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEE
Confidence 3467799999999999876 478999999999999999999999998899999999999999999999999887 788
Q ss_pred EEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCC-hHH--HHH--HHHhCC
Q 002183 148 LMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER-GVV--WEE--SIIFLP 211 (955)
Q Consensus 148 ~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~r-g~~--~~~--ii~~l~ 211 (955)
.++|+.+. +..++|+|+|+..+. ..+.++++||+||+|....++. ++. ... ......
T Consensus 220 ~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~ 292 (679)
T PRK05580 220 VLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKL 292 (679)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhc
Confidence 89988653 246899999998763 3478999999999998764421 211 112 223345
Q ss_pred CcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcc--cceEEEeecCCCceEEeecccchhchhhHHHHHHHHHH
Q 002183 212 PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT--PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLK 289 (955)
Q Consensus 212 ~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 289 (955)
.+.+++++|||++ .+ .|.....+ ....+....|+. ++-. +. +++.+.....
T Consensus 293 ~~~~~il~SATps-~~---s~~~~~~g-~~~~~~l~~r~~~~~~p~---------v~-~id~~~~~~~------------ 345 (679)
T PRK05580 293 ENIPVVLGSATPS-LE---SLANAQQG-RYRLLRLTKRAGGARLPE---------VE-IIDMRELLRG------------ 345 (679)
T ss_pred cCCCEEEEcCCCC-HH---HHHHHhcc-ceeEEEeccccccCCCCe---------EE-EEechhhhhh------------
Confidence 6789999999976 22 22222222 233333333321 1111 11 1111100000
Q ss_pred hhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCC---------CCCHH
Q 002183 290 QKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLD---------FNTQE 358 (955)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~---------~~~~~ 358 (955)
+....-. ..+++.+.+ ..+.++|||+|++..+..+...-+..- +.-+.
T Consensus 346 ------------------~~~~~ls---~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~ 404 (679)
T PRK05580 346 ------------------ENGSFLS---PPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHR 404 (679)
T ss_pred ------------------cccCCCC---HHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEEC
Confidence 0000001 122232222 144689999998765433322221100 00000
Q ss_pred HHHHHHHHHHHHHh-------hccccc--CCchhHHhHHHHh-----hcCeEeecCCCCH--HHHHHHHHHHhcCCccEE
Q 002183 359 EKDTVEQVFQNAVD-------CLNEED--RNLPAIELMLPLL-----KRGIAVHHSGLLP--VIKELVELLFQEGLVKAL 422 (955)
Q Consensus 359 e~~~i~~~~~~~~~-------~l~~~d--~~~~~~~~~~~~l-----~~gi~~~H~~l~~--~~R~~v~~~F~~g~i~VL 422 (955)
....+.--++.... ..+... ......+.+.+.+ ...|...|+++.+ ..++.++..|++|+++||
T Consensus 405 ~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~IL 484 (679)
T PRK05580 405 FQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADIL 484 (679)
T ss_pred CCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEE
Confidence 00000000000000 000000 0001122222222 2358889999874 678999999999999999
Q ss_pred EEcccccccCCCCCcEEEEecceeccCCCCcc------cCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 423 FATETFAMGLNMPAKTVVFTAVKKWDGDSHRY------IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 423 vaT~~la~Gidip~~~vVi~~~~~~d~~~~~~------~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|+|+++++|+|+|++++|+.- ..|...+.| .....|+|++|||||.+. .|.+++.+...
T Consensus 485 VgT~~iakG~d~p~v~lV~il--~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~--~g~viiqT~~p 549 (679)
T PRK05580 485 IGTQMLAKGHDFPNVTLVGVL--DADLGLFSPDFRASERTFQLLTQVAGRAGRAEK--PGEVLIQTYHP 549 (679)
T ss_pred EEChhhccCCCCCCcCEEEEE--cCchhccCCccchHHHHHHHHHHHHhhccCCCC--CCEEEEEeCCC
Confidence 999999999999999977411 223211111 134679999999999877 58888876443
No 86
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.4e-27 Score=274.19 Aligned_cols=123 Identities=19% Similarity=0.133 Sum_probs=101.7
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----Ce
Q 002183 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~v 146 (955)
...|..|+|+|..+++.+..|+ |+.+.||+|||++|.+|++.....|..++|++||++||.|.+..+..++. .+
T Consensus 98 R~lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv 175 (656)
T PRK12898 98 RVLGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTV 175 (656)
T ss_pred HHhCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEE
Confidence 4578899999999999999998 99999999999999999999988899999999999999999999988765 78
Q ss_pred eEEeccccc-----CCCCCEEEEeHHHH-----HHHHhc---------------------CCccCCccceEEEEccccCC
Q 002183 147 GLMTGDVTL-----SPNASCLVMTTEIL-----RGMLYR---------------------GSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 147 g~~tGd~~~-----~~~~~IlV~Tpe~L-----~~~l~~---------------------~~~~l~~l~~vIiDEaH~l~ 195 (955)
++++|+.+. ...++|+|+|..-+ ++.+.. .....+.+.++|+||||.++
T Consensus 176 ~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 176 GCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 888888653 23789999998655 222211 11224678899999999764
No 87
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=1.4e-26 Score=265.84 Aligned_cols=332 Identities=19% Similarity=0.192 Sum_probs=208.8
Q ss_pred hcCCCCCCHHHHHHHHHHhc----CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC--
Q 002183 71 KTYSFELDPFQRVSVACLER----NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~----g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-- 144 (955)
..+.++|+++|++|+.++.. ++..++++|||+|||+++..++... +.++||++|+++|+.||.+.+...+.
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~---~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL---KRSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh---cCCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 34567799999999999877 8999999999999999998888777 44599999999999999998888877
Q ss_pred -CeeEEecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEecccc
Q 002183 145 -DVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATM 223 (955)
Q Consensus 145 -~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~ 223 (955)
.+|.+.|+..-.....|.|+|...+...........+++++|||||||++.... ...+...+.....+++||||+
T Consensus 108 ~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~~~~~~~LGLTATp 183 (442)
T COG1061 108 DEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILELLSAAYPRLGLTATP 183 (442)
T ss_pred cccceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHhhhcccceeeeccCc
Confidence 367777765433226899999998875420011123379999999999998643 223333333333399999998
Q ss_pred CChH-HHHHHHhhhcCCCeEEEec-----CCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCcc
Q 002183 224 SNAT-QFAEWICHLHKQPCHVVYT-----DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRE 297 (955)
Q Consensus 224 ~n~~-~~~~~l~~~~~~~~~v~~~-----~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 297 (955)
+..+ .....+....+..++-+.. ..--.|...+... ......+........................
T Consensus 184 ~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~-------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (442)
T COG1061 184 EREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIK-------VTLTEDEEREYAKESARFRELLRARGTLRAE 256 (442)
T ss_pred eeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEE-------eccchHHHHHhhhhhhhhhhhhhhhhhhhHH
Confidence 7433 1111121111111111110 0111222211111 0001111000000000000000000000000
Q ss_pred CCCCCCCccCCCCCCCCCcHHHHHHHHHHc-CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhccc
Q 002183 298 NGKASGRMAKGGSGSGGSDIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376 (955)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~ 376 (955)
. ............+..+...+... ...+++||+.+..+++.++..+...+.
T Consensus 257 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~---------------------- 308 (442)
T COG1061 257 -----N-EARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI---------------------- 308 (442)
T ss_pred -----H-HHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc----------------------
Confidence 0 00000001112223333333333 367999999999999999999876332
Q ss_pred ccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccC
Q 002183 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIG 456 (955)
Q Consensus 377 ~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s 456 (955)
+..+.|..++.+|+.+++.|+.|.+++||++.++..|+|+|+++++|. -.+ ..|
T Consensus 309 ------------------~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~----~~~----t~S 362 (442)
T COG1061 309 ------------------VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII----LRP----TGS 362 (442)
T ss_pred ------------------eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE----eCC----CCc
Confidence 357899999999999999999999999999999999999999999883 223 668
Q ss_pred HHHHHHHhccCCCC
Q 002183 457 SGEYIQMSGRAGRR 470 (955)
Q Consensus 457 ~~ey~Q~~GRaGR~ 470 (955)
+..|+||+||.-|.
T Consensus 363 ~~~~~Q~lGR~LR~ 376 (442)
T COG1061 363 RRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHHHhhhhccC
Confidence 99999999999994
No 88
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.8e-27 Score=279.54 Aligned_cols=358 Identities=16% Similarity=0.176 Sum_probs=225.5
Q ss_pred hhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----C
Q 002183 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----D 145 (955)
Q Consensus 70 ~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~ 145 (955)
...+|..|+++|..+...+..|. ++.+.||+|||++|.+|++.....|..|.+++||+.||.|.+..+..++. .
T Consensus 72 ~R~~g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~ 149 (790)
T PRK09200 72 KRVLGMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLT 149 (790)
T ss_pred HHHhCCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 34578889999999999998886 99999999999999999997777899999999999999999999988776 6
Q ss_pred eeEEeccccc------CCCCCEEEEeHHHH-HHHHhc------CCccCCccceEEEEccccCC-CCCChH----------
Q 002183 146 VGLMTGDVTL------SPNASCLVMTTEIL-RGMLYR------GSEVLKEVAWVIFDEIHYMK-DRERGV---------- 201 (955)
Q Consensus 146 vg~~tGd~~~------~~~~~IlV~Tpe~L-~~~l~~------~~~~l~~l~~vIiDEaH~l~-d~~rg~---------- 201 (955)
+|+++|+.+. ...++|+++||+.+ .++|.. ....++.+.++|+||||.|+ |..+.+
T Consensus 150 v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~ 229 (790)
T PRK09200 150 VGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQ 229 (790)
T ss_pred EEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccc
Confidence 8888888762 23689999999888 333322 12356889999999999875 432222
Q ss_pred -----HHHHHHHhCCC--------cceEEEeccc----------cCC---h--HHHHHHHhhh-------cCCCeEEEec
Q 002183 202 -----VWEESIIFLPP--------AIKMVFLSAT----------MSN---A--TQFAEWICHL-------HKQPCHVVYT 246 (955)
Q Consensus 202 -----~~~~ii~~l~~--------~~~~v~lSAT----------~~n---~--~~~~~~l~~~-------~~~~~~v~~~ 246 (955)
.+..+...+.+ ..+.+.+|.. ++| . .++..|+..- ..+.-+++.
T Consensus 230 ~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~- 308 (790)
T PRK09200 230 SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVY- 308 (790)
T ss_pred cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEE-
Confidence 12223333322 1233444332 111 0 1233444321 111111211
Q ss_pred CCCcccceE--------EEeecCCCceEEeecccc------------hhchhhHHHHHHHHHHhhccCCc----------
Q 002183 247 DFRPTPLQH--------YVFPVGGSGLYLVVDEKE------------QFREDNFVKLQDTFLKQKIGGRR---------- 296 (955)
Q Consensus 247 ~~rp~pl~~--------~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~---------- 296 (955)
+..-.++.. ..|. .+++-.+..++ .....+|-+.+..+.--.+....
T Consensus 309 ~~~v~ivD~~TGr~~~gr~~s---~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~ 385 (790)
T PRK09200 309 DGEIVLVDRFTGRVLPGRKLQ---DGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN 385 (790)
T ss_pred CCEEEEEECCCCcCCCCCccC---hHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhC
Confidence 111111000 0000 01111111110 11122233333222110000000
Q ss_pred ------cCCCCCCCccCCC--CCCCCCcHHHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 002183 297 ------ENGKASGRMAKGG--SGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366 (955)
Q Consensus 297 ------~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~ 366 (955)
+...+..+..... -......+..++..+.. ..+.|+||||+|+..++.++..|.+.+++
T Consensus 386 l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~----------- 454 (790)
T PRK09200 386 MEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIP----------- 454 (790)
T ss_pred CcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCC-----------
Confidence 0000000000000 01223445566666654 36789999999999999999999887765
Q ss_pred HHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCC---CCcE-----
Q 002183 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNM---PAKT----- 438 (955)
Q Consensus 367 ~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidi---p~~~----- 438 (955)
+.++||.+.+.++..+...++.| +|+|||++++||+|+ |.+.
T Consensus 455 ----------------------------~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL 504 (790)
T PRK09200 455 ----------------------------HNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGL 504 (790)
T ss_pred ----------------------------EEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCc
Confidence 57899999998888888888777 799999999999999 7998
Q ss_pred EEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEe
Q 002183 439 VVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMV 482 (955)
Q Consensus 439 vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~ 482 (955)
+|| +||. |.+...|.||+|||||.|..|.+..|+..
T Consensus 505 ~VI----~~d~----p~s~r~y~qr~GRtGR~G~~G~s~~~is~ 540 (790)
T PRK09200 505 AVI----GTER----MESRRVDLQLRGRSGRQGDPGSSQFFISL 540 (790)
T ss_pred EEE----eccC----CCCHHHHHHhhccccCCCCCeeEEEEEcc
Confidence 999 8888 89999999999999999996544444443
No 89
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=7.4e-26 Score=233.11 Aligned_cols=310 Identities=23% Similarity=0.267 Sum_probs=227.4
Q ss_pred cCCCCCCHHHHHHHHH----HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC--C
Q 002183 72 TYSFELDPFQRVSVAC----LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--D 145 (955)
Q Consensus 72 ~~~f~l~~~Q~~ai~~----l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~--~ 145 (955)
.|+-+|+|.|+.+-.. +.+.++.+|.|-||||||-...-+|..+++.|.++.+.+|....+-+.+.+++..|. +
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~ 172 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCD 172 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCC
Confidence 3455699999988544 578899999999999999998889999999999999999999999999999999998 6
Q ss_pred eeEEecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccCC
Q 002183 146 VGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSN 225 (955)
Q Consensus 146 vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n 225 (955)
+.+++||....-.++++|+|+..|... -+.++++|+||+|-..-..-......+-......-.+|.||||+++
T Consensus 173 I~~Lyg~S~~~fr~plvVaTtHQLlrF-------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k 245 (441)
T COG4098 173 IDLLYGDSDSYFRAPLVVATTHQLLRF-------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTK 245 (441)
T ss_pred eeeEecCCchhccccEEEEehHHHHHH-------HhhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChH
Confidence 788999988777799999999988743 3467899999999654221122222233344556679999999985
Q ss_pred hHHHHHHHhhhcCCCeEEEecC----CCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCC
Q 002183 226 ATQFAEWICHLHKQPCHVVYTD----FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKA 301 (955)
Q Consensus 226 ~~~~~~~l~~~~~~~~~v~~~~----~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 301 (955)
. |.........+.+.-. .+|.|+-.+++..+ +.+.+. .
T Consensus 246 ~-----l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~------------------~~k~l~---r------------ 287 (441)
T COG4098 246 K-----LERKILKGNLRILKLPARFHGKPLPVPKFVWIGN------------------WNKKLQ---R------------ 287 (441)
T ss_pred H-----HHHHhhhCCeeEeecchhhcCCCCCCCceEEecc------------------HHHHhh---h------------
Confidence 3 3333333333333322 23444444444221 111110 0
Q ss_pred CCCccCCCCCCCCCcHHHHHHHHHHc--CCCcEEEEEcChHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHhhccccc
Q 002183 302 SGRMAKGGSGSGGSDIFKIVKMIMER--KFQPVIVFSFSRRECEQHAMSMSK-LDFNTQEEKDTVEQVFQNAVDCLNEED 378 (955)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~IVF~~s~~~~~~la~~L~~-~~~~~~~e~~~i~~~~~~~~~~l~~~d 378 (955)
..--..+.+.+.+. .+.|++||.++....+++|..|+. ....
T Consensus 288 ------------~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~----------------------- 332 (441)
T COG4098 288 ------------NKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKE----------------------- 332 (441)
T ss_pred ------------ccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCcc-----------------------
Confidence 00112455555443 458999999999999999999954 3222
Q ss_pred CCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHH
Q 002183 379 RNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSG 458 (955)
Q Consensus 379 ~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ 458 (955)
.|+..|+. ...|.+..+.|++|++++|++|.+++||+.+|.++|.+.. ..++..+-+
T Consensus 333 ---------------~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlg------aeh~vfTes 389 (441)
T COG4098 333 ---------------TIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLG------AEHRVFTES 389 (441)
T ss_pred ---------------ceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEec------CCcccccHH
Confidence 26777876 5667788889999999999999999999999999986632 344567889
Q ss_pred HHHHHhccCCCCCCCCceEEEEEeCC
Q 002183 459 EYIQMSGRAGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 459 ey~Q~~GRaGR~G~~~~g~~ii~~~~ 484 (955)
..+|++||+||.-....|.++.+-..
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEecc
Confidence 99999999999877777888777644
No 90
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.95 E-value=9.1e-27 Score=273.47 Aligned_cols=344 Identities=15% Similarity=0.146 Sum_probs=202.9
Q ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----Cee
Q 002183 72 TYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DVG 147 (955)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~vg 147 (955)
.+|..|++.|..+...+.+| .++.++||+|||++|.+|++.....|..++|++|+++||.|++..+..++. .++
T Consensus 66 ~lglrpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~ 143 (762)
T TIGR03714 66 VLGMFPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVS 143 (762)
T ss_pred hcCCCccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEE
Confidence 34544444444444444444 799999999999999999887777888999999999999999998876654 677
Q ss_pred EEecccc---c-------CCCCCEEEEeHHHH-HHHHhc------CCccCCccceEEEEccccCC-CCCChH--------
Q 002183 148 LMTGDVT---L-------SPNASCLVMTTEIL-RGMLYR------GSEVLKEVAWVIFDEIHYMK-DRERGV-------- 201 (955)
Q Consensus 148 ~~tGd~~---~-------~~~~~IlV~Tpe~L-~~~l~~------~~~~l~~l~~vIiDEaH~l~-d~~rg~-------- 201 (955)
+.+++.. . ...++|+++||++| .+.|.. ....++.+.++|+||||.|+ |..+-+
T Consensus 144 ~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~ 223 (762)
T TIGR03714 144 LGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPR 223 (762)
T ss_pred EEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCc
Confidence 7666521 1 13689999999999 343321 22346789999999999884 322211
Q ss_pred -------HHHHHHHhCCC--------cceEEEeccc----------cCC---h--HHHHHHHhhh-------cCCC----
Q 002183 202 -------VWEESIIFLPP--------AIKMVFLSAT----------MSN---A--TQFAEWICHL-------HKQP---- 240 (955)
Q Consensus 202 -------~~~~ii~~l~~--------~~~~v~lSAT----------~~n---~--~~~~~~l~~~-------~~~~---- 240 (955)
....+...|.+ ..+.+.||-. ++| . .++..|+..- ..+.
T Consensus 224 ~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV 303 (762)
T TIGR03714 224 VQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVV 303 (762)
T ss_pred cchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 11123333432 1233444321 111 1 1122222211 1111
Q ss_pred ----eEEEec-CCC----------------------ccc---------------ceEEEeecCCCceEEeecccchhchh
Q 002183 241 ----CHVVYT-DFR----------------------PTP---------------LQHYVFPVGGSGLYLVVDEKEQFRED 278 (955)
Q Consensus 241 ----~~v~~~-~~r----------------------p~p---------------l~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (955)
+.++.. ..| .++ +-..+.--.|... .+ ..
T Consensus 304 ~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~----~~-----~~ 374 (762)
T TIGR03714 304 TNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGK----VA-----EK 374 (762)
T ss_pred ECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCh----hH-----HH
Confidence 111111 000 000 0112222121100 00 01
Q ss_pred hHHHHHHHHHHhhccCCccCCCCCCCccCCC--CCCCCCcHHHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCCC
Q 002183 279 NFVKLQDTFLKQKIGGRRENGKASGRMAKGG--SGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDF 354 (955)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~~ 354 (955)
.|.+.+. -....-|.. .+..+..... -.....++..+++.+.+ ..+.|+||||+|+..++.++..|...++
T Consensus 375 Ef~~iY~---l~v~~IPt~--kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi 449 (762)
T TIGR03714 375 EFIETYS---LSVVKIPTN--KPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGI 449 (762)
T ss_pred HHHHHhC---CCEEEcCCC--CCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCC
Confidence 1111110 000000100 0000000000 00112345556666644 4568999999999999999999988766
Q ss_pred CCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCC
Q 002183 355 NTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNM 434 (955)
Q Consensus 355 ~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidi 434 (955)
. ..++||.+.+.++..+...++.| .|+|||++++||+|+
T Consensus 450 ~---------------------------------------~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI 488 (762)
T TIGR03714 450 P---------------------------------------HNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDI 488 (762)
T ss_pred C---------------------------------------EEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCC
Confidence 5 46889999999988888877777 699999999999999
Q ss_pred C---------CcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEE
Q 002183 435 P---------AKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIM 481 (955)
Q Consensus 435 p---------~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~ 481 (955)
| .+.||+ .|+. |....+ .||+|||||.|..|.+..|+.
T Consensus 489 ~l~~~v~~~GGL~vIi----t~~~----ps~rid-~qr~GRtGRqG~~G~s~~~is 535 (762)
T TIGR03714 489 KLGKGVAELGGLAVIG----TERM----ENSRVD-LQLRGRSGRQGDPGSSQFFVS 535 (762)
T ss_pred CCCccccccCCeEEEE----ecCC----CCcHHH-HHhhhcccCCCCceeEEEEEc
Confidence 9 899999 7777 555555 999999999999654444443
No 91
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.95 E-value=1.6e-25 Score=272.32 Aligned_cols=376 Identities=16% Similarity=0.141 Sum_probs=228.3
Q ss_pred CCCCHHHHHHHHHHhc--CCcEEEEcCCCCchHHHHHHHHHHHHhcC--CeEEEEccChhhHHHHHHHHHHhcC-CeeEE
Q 002183 75 FELDPFQRVSVACLER--NESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSNQKYRELHQEFK-DVGLM 149 (955)
Q Consensus 75 f~l~~~Q~~ai~~l~~--g~~vlv~apTGsGKTl~~~~~i~~~l~~~--~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~ 149 (955)
..|.|+|..+...+.. ...+|++..+|.|||+.+.+.+...+..| .++||++|. .|..||..++.++|+ +..++
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~ 229 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLF 229 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEE
Confidence 4599999999877633 35799999999999999977776665554 589999997 899999999998887 56665
Q ss_pred eccccc-------C--CCCCEEEEeHHHHHHHH-hcCCccCCccceEEEEccccCCCCC--ChHHHHHHHHhCC-CcceE
Q 002183 150 TGDVTL-------S--PNASCLVMTTEILRGML-YRGSEVLKEVAWVIFDEIHYMKDRE--RGVVWEESIIFLP-PAIKM 216 (955)
Q Consensus 150 tGd~~~-------~--~~~~IlV~Tpe~L~~~l-~~~~~~l~~l~~vIiDEaH~l~d~~--rg~~~~~ii~~l~-~~~~~ 216 (955)
.++... + ...+++|+|.+.+...- ......-..+++||+||||++.... ....+ ..+..+. ....+
T Consensus 230 ~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y-~~v~~La~~~~~~ 308 (956)
T PRK04914 230 DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY-QVVEQLAEVIPGV 308 (956)
T ss_pred cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH-HHHHHHhhccCCE
Confidence 544211 1 24689999999886421 0011112378999999999997321 12223 2333332 33468
Q ss_pred EEeccccC--ChHHHHHHHhhhcCCCeEE---Ee---cCCCcc-------------------cceEEEeecCCCceEEee
Q 002183 217 VFLSATMS--NATQFAEWICHLHKQPCHV---VY---TDFRPT-------------------PLQHYVFPVGGSGLYLVV 269 (955)
Q Consensus 217 v~lSAT~~--n~~~~~~~l~~~~~~~~~v---~~---~~~rp~-------------------pl~~~~~~~~~~~~~~~~ 269 (955)
++|||||- +..++-..+..+......- +. ..++|+ .+..++-......++-..
T Consensus 309 LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~ 388 (956)
T PRK04914 309 LLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAA 388 (956)
T ss_pred EEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhh
Confidence 99999986 3344333333221100000 00 000000 000000000000000000
Q ss_pred cccchhchhhHHHHHHHHHHhhccCC------c-cCCCCCCCcc------------------------------------
Q 002183 270 DEKEQFREDNFVKLQDTFLKQKIGGR------R-ENGKASGRMA------------------------------------ 306 (955)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~------~-~~~~~~~~~~------------------------------------ 306 (955)
.....-...........+........ + ...+...+..
T Consensus 389 ~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~~~ 468 (956)
T PRK04914 389 NSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQEF 468 (956)
T ss_pred cccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHHHH
Confidence 00000000000111111111000000 0 0000000000
Q ss_pred --CCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHhhcccccCCchh
Q 002183 307 --KGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMS-KLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPA 383 (955)
Q Consensus 307 --~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~-~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~ 383 (955)
.+.-.....++..+++.+......++||||+++..|..++..|. ..|+.
T Consensus 469 ~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~---------------------------- 520 (956)
T PRK04914 469 EDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIR---------------------------- 520 (956)
T ss_pred hhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCee----------------------------
Confidence 00000112345566776766667899999999999999999994 44443
Q ss_pred HHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhc--CCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHH
Q 002183 384 IELMLPLLKRGIAVHHSGLLPVIKELVELLFQE--GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYI 461 (955)
Q Consensus 384 ~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~--g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~ 461 (955)
+..+||+|++.+|+.+.+.|++ |..+|||||+++++|+|++.+++|| +||. |++|..|.
T Consensus 521 -----------~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VI----nfDl----P~nP~~~e 581 (956)
T PRK04914 521 -----------AAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLV----LFDL----PFNPDLLE 581 (956)
T ss_pred -----------EEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEE----EecC----CCCHHHHH
Confidence 5789999999999999999997 4699999999999999999999999 9999 99999999
Q ss_pred HHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCC
Q 002183 462 QMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKP 499 (955)
Q Consensus 462 Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~ 499 (955)
||+||+||.|+.+...+++.+.+....+.+.++.....
T Consensus 582 QRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 582 QRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred HHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 99999999999877777777666545556666655543
No 92
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.95 E-value=1.2e-26 Score=270.75 Aligned_cols=350 Identities=17% Similarity=0.142 Sum_probs=220.6
Q ss_pred hhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----C
Q 002183 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----D 145 (955)
Q Consensus 70 ~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~ 145 (955)
...+|..|++.|..+...+..|. ++.++||+|||++|.+|++.....|..|.+++||..||.|.++.+..++. .
T Consensus 50 ~R~lg~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLs 127 (745)
T TIGR00963 50 KRVLGMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLS 127 (745)
T ss_pred HHHhCCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCe
Confidence 35678889999999999988876 99999999999999999965545677899999999999999999998877 5
Q ss_pred eeEEecccccC-----CCCCEEEEeHHHH-HHHHhcC------CccCCccceEEEEccccCC-CCCChHHH---------
Q 002183 146 VGLMTGDVTLS-----PNASCLVMTTEIL-RGMLYRG------SEVLKEVAWVIFDEIHYMK-DRERGVVW--------- 203 (955)
Q Consensus 146 vg~~tGd~~~~-----~~~~IlV~Tpe~L-~~~l~~~------~~~l~~l~~vIiDEaH~l~-d~~rg~~~--------- 203 (955)
+++++|+.+.. -.++|+|+||.+| .+.+..+ ...++.+.++|+||+|.++ |..|.+.+
T Consensus 128 v~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~ 207 (745)
T TIGR00963 128 VGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKST 207 (745)
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCch
Confidence 77888876532 2579999999999 7766554 2457899999999999876 33322221
Q ss_pred ------HHHHHhCCC--------cceEEEeccc----------cCC-----hHHHHHHHhhh-------cCCC-------
Q 002183 204 ------EESIIFLPP--------AIKMVFLSAT----------MSN-----ATQFAEWICHL-------HKQP------- 240 (955)
Q Consensus 204 ------~~ii~~l~~--------~~~~v~lSAT----------~~n-----~~~~~~~l~~~-------~~~~------- 240 (955)
..+...|.. ..+.+.||.- ++| ..++..|+..- ..+.
T Consensus 208 ~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~ 287 (745)
T TIGR00963 208 ELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDG 287 (745)
T ss_pred HHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECC
Confidence 111122211 1223333321 011 11233333311 1111
Q ss_pred -eEEEec-CCC----------------------ccc---------------ceEEEeecCCCceEEeecccchhchhhHH
Q 002183 241 -CHVVYT-DFR----------------------PTP---------------LQHYVFPVGGSGLYLVVDEKEQFREDNFV 281 (955)
Q Consensus 241 -~~v~~~-~~r----------------------p~p---------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (955)
+.++.. ..| .+| +-..++--.|.-. .+ ...+.
T Consensus 288 ~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~----te-----~~E~~ 358 (745)
T TIGR00963 288 EVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAK----TE-----EEEFE 358 (745)
T ss_pred EEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcH----HH-----HHHHH
Confidence 111111 000 000 0111111111000 00 00011
Q ss_pred HHHHHHHHhhccCCccCCCCCCCccCCC--CCCCCCcHHHHHHHHH--HcCCCcEEEEEcChHHHHHHHHHhccCCCCCH
Q 002183 282 KLQDTFLKQKIGGRRENGKASGRMAKGG--SGSGGSDIFKIVKMIM--ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQ 357 (955)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~--~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~ 357 (955)
+.+. -....-|.. .+..+..... -......+.++++.+. ...+.|+||||+|+..++.++..|.+.++.
T Consensus 359 ~iY~---l~vv~IPtn--kp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~-- 431 (745)
T TIGR00963 359 KIYN---LEVVVVPTN--RPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIP-- 431 (745)
T ss_pred HHhC---CCEEEeCCC--CCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCC--
Confidence 1100 000000000 0000000000 0111234555655552 346789999999999999999999887665
Q ss_pred HHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCC-
Q 002183 358 EEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPA- 436 (955)
Q Consensus 358 ~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~- 436 (955)
..++||+ +..|+..+..|+.+...|+|||++++||+|++.
T Consensus 432 -------------------------------------~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~ 472 (745)
T TIGR00963 432 -------------------------------------HNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLE 472 (745)
T ss_pred -------------------------------------eEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCcc
Confidence 3678998 889999999999999999999999999999998
Q ss_pred ------cEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCC
Q 002183 437 ------KTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 437 ------~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~ 484 (955)
..+|| .++. |.+...|.|+.|||||.|..|.+..|+...+
T Consensus 473 ~V~~~GGl~VI----~t~~----p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 473 EVKELGGLYVI----GTER----HESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred chhhcCCcEEE----ecCC----CCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 44888 6666 8899999999999999999766666665544
No 93
>PRK09694 helicase Cas3; Provisional
Probab=99.94 E-value=1.1e-25 Score=271.98 Aligned_cols=323 Identities=15% Similarity=0.101 Sum_probs=197.5
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC--CeEEEEccChhhHHHHHHHHHH----hcC--C
Q 002183 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSNQKYRELHQ----EFK--D 145 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~--~~vl~l~PtkaLa~Q~~~~l~~----~~~--~ 145 (955)
+|.|+|+|+.+......+..+++.||||+|||.++++++...+..+ .+++|..||++++||+++++.+ .|+ +
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 6789999998865545567799999999999999988877655443 6899999999999999999875 443 5
Q ss_pred eeEEecccccC-------------------------------C---CCCEEEEeHHHHHHHHhc-CCccCCcc----ceE
Q 002183 146 VGLMTGDVTLS-------------------------------P---NASCLVMTTEILRGMLYR-GSEVLKEV----AWV 186 (955)
Q Consensus 146 vg~~tGd~~~~-------------------------------~---~~~IlV~Tpe~L~~~l~~-~~~~l~~l----~~v 186 (955)
+++.+|....+ . -++|+|+|+..+...... ....++.+ ++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 77777755321 0 168999999887743332 22233333 489
Q ss_pred EEEccccCCCCCChHHHHHHHHhC-CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCce
Q 002183 187 IFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGL 265 (955)
Q Consensus 187 IiDEaH~l~d~~rg~~~~~ii~~l-~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~ 265 (955)
||||+|-+ |......+..++..+ ..+.++|+||||+|... ...++..+.... .+. .....|+-...-... ..
T Consensus 444 IiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~-r~~L~~a~~~~~-~~~--~~~~YPlvt~~~~~~--~~ 516 (878)
T PRK09694 444 IVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATL-KQKLLDTYGGHD-PVE--LSSAYPLITWRGVNG--AQ 516 (878)
T ss_pred EEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHH-HHHHHHHhcccc-ccc--ccccccccccccccc--ce
Confidence 99999987 333444555555543 34678999999998542 112233221110 000 000111110000000 00
Q ss_pred EEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHH--cCCCcEEEEEcChHHHH
Q 002183 266 YLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECE 343 (955)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~ 343 (955)
......... ..+ ....- ...............++..+.+ ..+++++|||||++.|+
T Consensus 517 ~~~~~~~~~------------------~~~---~~~~v-~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq 574 (878)
T PRK09694 517 RFDLSAHPE------------------QLP---ARFTI-QLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQ 574 (878)
T ss_pred eeecccccc------------------ccC---cceEE-EEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 000000000 000 00000 0000000000111223333322 24578999999999999
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHH----HHHHHH-hcCC
Q 002183 344 QHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE----LVELLF-QEGL 418 (955)
Q Consensus 344 ~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~----~v~~~F-~~g~ 418 (955)
.++..|++..... ..+..+||++.+.+|. .+++.| ++|.
T Consensus 575 ~ly~~L~~~~~~~------------------------------------~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~ 618 (878)
T PRK09694 575 KLYQRLKELNNTQ------------------------------------VDIDLFHARFTLNDRREKEQRVIENFGKNGK 618 (878)
T ss_pred HHHHHHHhhCCCC------------------------------------ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 9999997532110 1278999999999995 456677 5665
Q ss_pred ---ccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCC
Q 002183 419 ---VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGK 472 (955)
Q Consensus 419 ---i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~ 472 (955)
.+|||||+++++|||++ .+++|+.. . | ...++||+||+||.|.
T Consensus 619 r~~~~ILVaTQViE~GLDId-~DvlItdl----a----P--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 619 RNQGRILVATQVVEQSLDLD-FDWLITQL----C----P--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred cCCCeEEEECcchhheeecC-CCeEEECC----C----C--HHHHHHHHhccCCCCC
Confidence 47999999999999995 68888432 2 3 5789999999999987
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=2.9e-25 Score=257.94 Aligned_cols=329 Identities=20% Similarity=0.167 Sum_probs=192.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-CeeEEeccccc-----------CCCCCEE
Q 002183 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTL-----------SPNASCL 162 (955)
Q Consensus 95 lv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~tGd~~~-----------~~~~~Il 162 (955)
++.||||||||.+|+.++...+..|.++||++|+++|+.|+++.|++.|+ ++.+++|+.+. +.+++|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 47899999999999988888888999999999999999999999999887 78889887642 2468999
Q ss_pred EEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCC-hHHH--H--HHHHhCCCcceEEEeccccCChHHHHHHHhhhc
Q 002183 163 VMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER-GVVW--E--ESIIFLPPAIKMVFLSATMSNATQFAEWICHLH 237 (955)
Q Consensus 163 V~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~r-g~~~--~--~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~ 237 (955)
|+|+..+. ..+.++++|||||+|....++. ++.+ . ..+.....+.++|++|||++ .+. |.....
T Consensus 81 VGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs-les---~~~~~~ 149 (505)
T TIGR00595 81 IGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS-LES---YHNAKQ 149 (505)
T ss_pred ECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC-HHH---HHHHhc
Confidence 99998763 2478999999999998774332 2111 1 12223345789999999965 322 222222
Q ss_pred CCCeEEEecCCCc----ccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCC
Q 002183 238 KQPCHVVYTDFRP----TPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSG 313 (955)
Q Consensus 238 ~~~~~v~~~~~rp----~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (955)
+ .........|+ .|..+. ++.+.... . ..-
T Consensus 150 g-~~~~~~l~~r~~~~~~p~v~v------------id~~~~~~-------------------------------~--~~l 183 (505)
T TIGR00595 150 K-AYRLLVLTRRVSGRKPPEVKL------------IDMRKEPR-------------------------------Q--SFL 183 (505)
T ss_pred C-CeEEeechhhhcCCCCCeEEE------------Eecccccc-------------------------------c--CCc
Confidence 2 22222222221 111111 11110000 0 000
Q ss_pred CCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccC---------CCCCHHHHHHHHHHHHHHHh-------hcccc
Q 002183 314 GSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL---------DFNTQEEKDTVEQVFQNAVD-------CLNEE 377 (955)
Q Consensus 314 ~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~---------~~~~~~e~~~i~~~~~~~~~-------~l~~~ 377 (955)
...+...+....+ .+.++|||+|++..+..+...=+.. .++-......+.--+..+.. .....
T Consensus 184 s~~l~~~i~~~l~-~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 184 SPELITAIEQTLA-AGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred cHHHHHHHHHHHH-cCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 1112222222222 3468999999987543322111000 00000000000000000000 00000
Q ss_pred c--CCchhHHhHHHHh-----hcCeEeecCCCCHHHH--HHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceecc
Q 002183 378 D--RNLPAIELMLPLL-----KRGIAVHHSGLLPVIK--ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448 (955)
Q Consensus 378 d--~~~~~~~~~~~~l-----~~gi~~~H~~l~~~~R--~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d 448 (955)
+ ..-...+.+.+.+ ...|...|+++....+ +.++..|++|+++|||+|+++++|+|+|++++|+.- .+|
T Consensus 263 ~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl--~aD 340 (505)
T TIGR00595 263 DLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVL--DAD 340 (505)
T ss_pred eeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEE--cCc
Confidence 0 0000111111111 2358889999987766 889999999999999999999999999999976411 333
Q ss_pred CCCCcc------cCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 449 GDSHRY------IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 449 ~~~~~~------~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
..-+.| .....|+|++|||||.+. .|.+++.....
T Consensus 341 ~~l~~pd~ra~E~~~~ll~q~~GRagR~~~--~g~viiqt~~p 381 (505)
T TIGR00595 341 SGLHSPDFRAAERGFQLLTQVAGRAGRAED--PGQVIIQTYNP 381 (505)
T ss_pred ccccCcccchHHHHHHHHHHHHhccCCCCC--CCEEEEEeCCC
Confidence 321112 135679999999999887 57888765443
No 95
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=8e-25 Score=261.02 Aligned_cols=307 Identities=21% Similarity=0.271 Sum_probs=236.8
Q ss_pred CCchhhhhcCCCCCCHHHHHHHHHHhc------CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHH
Q 002183 64 VYNGEMAKTYSFELDPFQRVSVACLER------NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYR 137 (955)
Q Consensus 64 ~~~~~~~~~~~f~l~~~Q~~ai~~l~~------g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~ 137 (955)
.+...++..|||+-||-|..||..+.+ ..|=+||+..|.|||-||+-|+..+..+|++|.+++||--||.|-|+
T Consensus 582 ~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~ 661 (1139)
T COG1197 582 EWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYE 661 (1139)
T ss_pred HHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHH
Confidence 378899999999999999999998733 36889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeeEEecccc---------------cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHH
Q 002183 138 ELHQEFKDVGLMTGDVT---------------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVV 202 (955)
Q Consensus 138 ~l~~~~~~vg~~tGd~~---------------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~ 202 (955)
.|++.|.+..+-.+..+ -+...+|+|+|.-.| .....+.+++++||||-|+. |+.
T Consensus 662 tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqRF-----GVk 731 (1139)
T COG1197 662 TFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQRF-----GVK 731 (1139)
T ss_pred HHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhhc-----Ccc
Confidence 99999985444333221 145789999997644 34556899999999999954 777
Q ss_pred HHHHHHhCCCcceEEEecccc-CChHHHHHHHhhhcCCCeEEEec-CCCcccceEEEeecCCCceEEeecccchhchhhH
Q 002183 203 WEESIIFLPPAIKMVFLSATM-SNATQFAEWICHLHKQPCHVVYT-DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNF 280 (955)
Q Consensus 203 ~~~ii~~l~~~~~~v~lSAT~-~n~~~~~~~l~~~~~~~~~v~~~-~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (955)
-.+-+..+..++-++-||||+ |..-. --+..+ +...++.+ ..+.-|++.|+.+.+ ..-+
T Consensus 732 ~KEkLK~Lr~~VDvLTLSATPIPRTL~--Msm~Gi--RdlSvI~TPP~~R~pV~T~V~~~d---------------~~~i 792 (1139)
T COG1197 732 HKEKLKELRANVDVLTLSATPIPRTLN--MSLSGI--RDLSVIATPPEDRLPVKTFVSEYD---------------DLLI 792 (1139)
T ss_pred HHHHHHHHhccCcEEEeeCCCCcchHH--HHHhcc--hhhhhccCCCCCCcceEEEEecCC---------------hHHH
Confidence 888999999999999999997 43321 112211 12333333 233445555543221 0000
Q ss_pred HHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHH
Q 002183 281 VKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360 (955)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~ 360 (955)
..++.+.+. .++++-.-.|..+..+..+..|+.+-...
T Consensus 793 ------------------------------------reAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEa---- 830 (1139)
T COG1197 793 ------------------------------------REAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEA---- 830 (1139)
T ss_pred ------------------------------------HHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCce----
Confidence 012333332 45788888999999999999998754332
Q ss_pred HHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEE
Q 002183 361 DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVV 440 (955)
Q Consensus 361 ~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vV 440 (955)
.|++-||.|++.+-+.++..|-+|..+|||||...+.|||+|+.+.+
T Consensus 831 ---------------------------------rI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTi 877 (1139)
T COG1197 831 ---------------------------------RIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTI 877 (1139)
T ss_pred ---------------------------------EEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceE
Confidence 38999999999999999999999999999999999999999999876
Q ss_pred E-ecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCC
Q 002183 441 F-TAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 441 i-~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~ 484 (955)
| ....+ ...++..|..||.||..+ .|+|++++.+
T Consensus 878 IIe~AD~--------fGLsQLyQLRGRVGRS~~--~AYAYfl~p~ 912 (1139)
T COG1197 878 IIERADK--------FGLAQLYQLRGRVGRSNK--QAYAYFLYPP 912 (1139)
T ss_pred EEecccc--------ccHHHHHHhccccCCccc--eEEEEEeecC
Confidence 6 22222 345889999999999987 7999999865
No 96
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.93 E-value=2.4e-25 Score=234.21 Aligned_cols=293 Identities=19% Similarity=0.221 Sum_probs=191.8
Q ss_pred eEEEEccChhhHHHHHHHHHH---hcC--Cee--EEecccc-------cCCCCCEEEEeHHHHHHHHhcCCccCCccceE
Q 002183 121 RVIYTSPLKALSNQKYRELHQ---EFK--DVG--LMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (955)
Q Consensus 121 ~vl~l~PtkaLa~Q~~~~l~~---~~~--~vg--~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (955)
.++++-|.++|+.|.+..+++ ... .+- ++.|++. .....+|+|+||+++..++..+...+.++.++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 689999999999999985544 332 222 4555442 34578999999999999999999889999999
Q ss_pred EEEccccCCCCCChHHHHHHHHhCC------CcceEEEeccccCCh--HHHHHHHhhhcCCCeEEEecCCC--cccceEE
Q 002183 187 IFDEIHYMKDRERGVVWEESIIFLP------PAIKMVFLSATMSNA--TQFAEWICHLHKQPCHVVYTDFR--PTPLQHY 256 (955)
Q Consensus 187 IiDEaH~l~d~~rg~~~~~ii~~l~------~~~~~v~lSAT~~n~--~~~~~~l~~~~~~~~~v~~~~~r--p~pl~~~ 256 (955)
|+||++.++..++...+......+| ...|.+..|||+.-- ..+++-+ +.-|..+-..... |....|+
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~erv---mhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERV---MHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhh---ccCceeEecccccccchhhccc
Confidence 9999999998777766666555554 357899999998622 1222222 2223333222222 2223333
Q ss_pred EeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCC--CCCCCCcHH------HHHHHHHHcC
Q 002183 257 VFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGG--SGSGGSDIF------KIVKMIMERK 328 (955)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~l~~~l~~~~ 328 (955)
+.... +. ....|......+......... ....+ .....+... .-+..+.+..
T Consensus 445 v~lv~---------p~---~d~sw~~lr~~i~td~vh~kd--------n~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~ 504 (725)
T KOG0349|consen 445 VKLVC---------PS---VDGSWCDLRQFIETDKVHTKD--------NLLPGQVSPENPSSATKILKGEYGVVAIRRHA 504 (725)
T ss_pred eeecC---------Cc---cCccHHHHhhhhccCCccccc--------ccccccCCCCChhhhhHHhcCchhhhhhhhhc
Confidence 32211 10 001112211111000000000 00000 001111111 1233455567
Q ss_pred CCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHH
Q 002183 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (955)
Q Consensus 329 ~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~ 408 (955)
..++||||.++..|+.+-+.+.+.+-.. .....+||+..|.+|.
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~------------------------------------~scvclhgDrkP~Erk 548 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKH------------------------------------YSCVCLHGDRKPDERK 548 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCcc------------------------------------ceeEEEecCCChhHHH
Confidence 8899999999999999999997754322 2267899999999999
Q ss_pred HHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEe
Q 002183 409 LVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMV 482 (955)
Q Consensus 409 ~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~ 482 (955)
.-++.|+++.++.|+||+++++|+|+..+-.+|+.+. |.+...|+||+||.||+-+ .|.+|-++
T Consensus 549 ~nle~Fkk~dvkflictdvaargldi~g~p~~invtl--------pd~k~nyvhrigrvgraer--mglaislv 612 (725)
T KOG0349|consen 549 ANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTL--------PDDKTNYVHRIGRVGRAER--MGLAISLV 612 (725)
T ss_pred HHHHhhhhcCeEEEEEehhhhccccccCCceEEEEec--------Ccccchhhhhhhccchhhh--cceeEEEe
Confidence 9999999999999999999999999999999994433 6677889999999999987 45555544
No 97
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.92 E-value=9.1e-24 Score=236.85 Aligned_cols=331 Identities=20% Similarity=0.284 Sum_probs=236.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHH-HHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-----CeeE
Q 002183 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAE-YAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-----DVGL 148 (955)
Q Consensus 75 f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~-~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-----~vg~ 148 (955)
.+...+-.+.+..+.+++-++|.++||||||..-- |.....+...+++.++.|.|--|.-+.++..+..+ .||.
T Consensus 50 LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 50 LPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred CCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 33455666788889999999999999999998532 22222234456699999999888888877777655 3443
Q ss_pred E-ecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC------CCcceEEEecc
Q 002183 149 M-TGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL------PPAIKMVFLSA 221 (955)
Q Consensus 149 ~-tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l------~~~~~~v~lSA 221 (955)
. .-+....+...|.+||.+.|+..+...+ .++++++||+|||| +|.....-++..| +++.++|.+||
T Consensus 130 ~IRFed~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAH-----ERsl~TDiLlGlLKki~~~R~~LklIimSA 203 (674)
T KOG0922|consen 130 TIRFEDSTSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAH-----ERSLHTDILLGLLKKILKKRPDLKLIIMSA 203 (674)
T ss_pred EEEecccCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechh-----hhhhHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 2 2244445688999999999987766555 48999999999999 5554444443332 45689999999
Q ss_pred ccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCC
Q 002183 222 TMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKA 301 (955)
Q Consensus 222 T~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 301 (955)
|+ |++.|.+++.. +.++.-..|.-|++.+.... +...+ .
T Consensus 204 Tl-da~kfS~yF~~-----a~i~~i~GR~fPVei~y~~~----------p~~dY-----v-------------------- 242 (674)
T KOG0922|consen 204 TL-DAEKFSEYFNN-----APILTIPGRTFPVEILYLKE----------PTADY-----V-------------------- 242 (674)
T ss_pred ee-cHHHHHHHhcC-----CceEeecCCCCceeEEeccC----------Cchhh-----H--------------------
Confidence 99 67788888863 55666667766666433211 11011 1
Q ss_pred CCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCc
Q 002183 302 SGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNL 381 (955)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~ 381 (955)
...+..+++.....+.+-++||.....+.+.+++.|.+..-. +.+....
T Consensus 243 ------------~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~------------------~~~~~~~- 291 (674)
T KOG0922|consen 243 ------------DAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKS------------------LPEDCPE- 291 (674)
T ss_pred ------------HHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhh------------------ccccCcc-
Confidence 112223333334456678999999999999999988763111 1111100
Q ss_pred hhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecc----eeccCCC------
Q 002183 382 PAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV----KKWDGDS------ 451 (955)
Q Consensus 382 ~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~----~~~d~~~------ 451 (955)
-+..+||+|+++++..|...-..|..||++||++++..|.||.+.+||++. ..|++..
T Consensus 292 ------------~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~ 359 (674)
T KOG0922|consen 292 ------------LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLI 359 (674)
T ss_pred ------------eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCcccee
Confidence 156799999999999999988899999999999999999999999999875 3576652
Q ss_pred CcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCcc
Q 002183 452 HRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPL 502 (955)
Q Consensus 452 ~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l 502 (955)
..|+|-++-.||+|||||.|. |.|+-++++. .+.++.....+.+
T Consensus 360 v~~ISkasA~QRaGRAGRt~p---GkcyRLYte~----~~~~~~~~~~PEI 403 (674)
T KOG0922|consen 360 VVPISKASANQRAGRAGRTGP---GKCYRLYTES----AYDKMPLQTVPEI 403 (674)
T ss_pred EEechHHHHhhhcccCCCCCC---ceEEEeeeHH----HHhhcccCCCCce
Confidence 357899999999999999985 9999999765 3455554444444
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=4.2e-23 Score=256.86 Aligned_cols=333 Identities=14% Similarity=0.128 Sum_probs=199.7
Q ss_pred CCCCHHHHHHHHHHh----c-CCcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccChhhHHHHHHHHHHhcCCee
Q 002183 75 FELDPFQRVSVACLE----R-NESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFKDVG 147 (955)
Q Consensus 75 f~l~~~Q~~ai~~l~----~-g~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg 147 (955)
+.++++|.+|+..+. + .+++++++|||||||.++...+...++. ..++|+++|+++|+.|....|.......+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 569999999998763 2 4679999999999999876666555543 47999999999999999999998643211
Q ss_pred ----EE---e--cccccCCCCCEEEEeHHHHHHHHhcC-----CccCCccceEEEEccccCCC--CC-------------
Q 002183 148 ----LM---T--GDVTLSPNASCLVMTTEILRGMLYRG-----SEVLKEVAWVIFDEIHYMKD--RE------------- 198 (955)
Q Consensus 148 ----~~---t--Gd~~~~~~~~IlV~Tpe~L~~~l~~~-----~~~l~~l~~vIiDEaH~l~d--~~------------- 198 (955)
-+ . ++........|+|+|...+.+.+... ...+..+++||+||||+-.. ..
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~ 571 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLD 571 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhh
Confidence 11 1 12223446899999999987765321 13467889999999998531 10
Q ss_pred ChHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEec-----CCCcc----cceEEEeecCCCceEEee
Q 002183 199 RGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT-----DFRPT----PLQHYVFPVGGSGLYLVV 269 (955)
Q Consensus 199 rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~-----~~rp~----pl~~~~~~~~~~~~~~~~ 269 (955)
+...|..++.... ...|+|||||... -.++++ .+++.+.. +.--+ |...... ....++....
T Consensus 572 ~~~~yr~iL~yFd--A~~IGLTATP~r~--t~~~FG----~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~-~~~~gi~~~~ 642 (1123)
T PRK11448 572 YVSKYRRVLDYFD--AVKIGLTATPALH--TTEIFG----EPVYTYSYREAVIDGYLIDHEPPIRIETR-LSQEGIHFEK 642 (1123)
T ss_pred HHHHHHHHHhhcC--ccEEEEecCCccc--hhHHhC----CeeEEeeHHHHHhcCCcccCcCCEEEEEE-eccccccccc
Confidence 1245777776553 4689999999621 122222 23332221 11111 1111100 0000010000
Q ss_pred cc-cchhc-----------hhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEc
Q 002183 270 DE-KEQFR-----------EDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSF 337 (955)
Q Consensus 270 ~~-~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~ 337 (955)
++ ...+. .+........+...... + .....-+..+++.+.....+++||||.
T Consensus 643 ~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~-~---------------~~~~~i~~~l~~~l~~~~~~KtiIF~~ 706 (1123)
T PRK11448 643 GEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVIT-E---------------SFNRVVCEELAKYLDPTGEGKTLIFAA 706 (1123)
T ss_pred cchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhh-H---------------HHHHHHHHHHHHHHhccCCCcEEEEEc
Confidence 00 00000 00000000000000000 0 000001123344443344579999999
Q ss_pred ChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcC
Q 002183 338 SRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEG 417 (955)
Q Consensus 338 s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g 417 (955)
++.+|+.++..|.... . .. .+. .-...+..+||+.. .+..+++.|+++
T Consensus 707 s~~HA~~i~~~L~~~f-~-------------~~---~~~-------------~~~~~v~~itg~~~--~~~~li~~Fk~~ 754 (1123)
T PRK11448 707 TDAHADMVVRLLKEAF-K-------------KK---YGQ-------------VEDDAVIKITGSID--KPDQLIRRFKNE 754 (1123)
T ss_pred CHHHHHHHHHHHHHHH-H-------------hh---cCC-------------cCccceEEEeCCcc--chHHHHHHHhCC
Confidence 9999999998886521 0 00 000 00012456788875 467799999998
Q ss_pred Cc-cEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCC
Q 002183 418 LV-KALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGK 472 (955)
Q Consensus 418 ~i-~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~ 472 (955)
.. +|+|+++++++|+|+|.+.+|| .++. +.|...|+||+||+.|...
T Consensus 755 ~~p~IlVsvdmL~TG~DvP~v~~vV----f~rp----vkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 755 RLPNIVVTVDLLTTGIDVPSICNLV----FLRR----VRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred CCCeEEEEecccccCCCcccccEEE----EecC----CCCHHHHHHHHhhhccCCc
Confidence 86 7999999999999999999988 4555 7789999999999999754
No 99
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.7e-23 Score=249.09 Aligned_cols=313 Identities=22% Similarity=0.268 Sum_probs=237.2
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhcC-C----eeE-E
Q 002183 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFK-D----VGL-M 149 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~----vg~-~ 149 (955)
.+....+.+.++.+++.++++||||||||...-..++..- ..++++.++-|.|--|..+.+++.+.++ + ||. +
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i 130 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI 130 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE
Confidence 4666777888899999999999999999987544444443 4467899999999888888888888776 3 444 4
Q ss_pred ecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHH-------HHhCCCcceEEEeccc
Q 002183 150 TGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES-------IIFLPPAIKMVFLSAT 222 (955)
Q Consensus 150 tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~i-------i~~l~~~~~~v~lSAT 222 (955)
..+....+...|-+||.++|..++...+. ++.+++|||||+| +|.....-+ +...+++.++|.||||
T Consensus 131 Rfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaH-----ERSl~tDilLgllk~~~~~rr~DLKiIimSAT 204 (845)
T COG1643 131 RFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAH-----ERSLNTDILLGLLKDLLARRRDDLKLIIMSAT 204 (845)
T ss_pred EeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchh-----hhhHHHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 45667788999999999999999987765 8999999999999 444443333 3345567999999999
Q ss_pred cCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCC
Q 002183 223 MSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKAS 302 (955)
Q Consensus 223 ~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 302 (955)
+ |.+.|+++++. +.++..+.|.-|++.+.-+... .+.. +
T Consensus 205 l-d~~rfs~~f~~-----apvi~i~GR~fPVei~Y~~~~~--------~d~~-----l---------------------- 243 (845)
T COG1643 205 L-DAERFSAYFGN-----APVIEIEGRTYPVEIRYLPEAE--------ADYI-----L---------------------- 243 (845)
T ss_pred c-CHHHHHHHcCC-----CCEEEecCCccceEEEecCCCC--------cchh-----H----------------------
Confidence 9 66778888863 5667777777777643321110 0000 0
Q ss_pred CCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCch
Q 002183 303 GRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLP 382 (955)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~ 382 (955)
...+...+........+.++||.+..++.+.++..|.+..+..
T Consensus 244 -----------~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~-------------------------- 286 (845)
T COG1643 244 -----------LDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGD-------------------------- 286 (845)
T ss_pred -----------HHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccC--------------------------
Confidence 1122333444444567889999999999999999997622210
Q ss_pred hHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecce----eccCCC------C
Q 002183 383 AIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK----KWDGDS------H 452 (955)
Q Consensus 383 ~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~----~~d~~~------~ 452 (955)
.--|..+||.|++.++..+++--..|..+|++||++++.+|.||++.+||.+.. .||... .
T Consensus 287 ---------~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~ 357 (845)
T COG1643 287 ---------DLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLET 357 (845)
T ss_pred ---------CcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeE
Confidence 012788999999999999888888888889999999999999999999997753 566652 3
Q ss_pred cccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 453 RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 453 ~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
.|+|-++..||+|||||.+. |+||-++++.
T Consensus 358 ~~ISqAsA~QRaGRAGR~~p---GicyRLyse~ 387 (845)
T COG1643 358 EPISKASADQRAGRAGRTGP---GICYRLYSEE 387 (845)
T ss_pred EEechhhhhhhccccccCCC---ceEEEecCHH
Confidence 57789999999999999985 9999999764
No 100
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.90 E-value=6.2e-23 Score=213.17 Aligned_cols=174 Identities=22% Similarity=0.251 Sum_probs=147.1
Q ss_pred hhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc-----CCeEEEEccChhhHHHHHHHHH
Q 002183 67 GEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-----KQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 67 ~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-----~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
.+....++|+ |+++|.++++.+.+|+++++++|||+|||++|.++++..+.. +.+++|++|+++|+.|+...+.
T Consensus 11 ~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~ 90 (203)
T cd00268 11 LRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVAR 90 (203)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHH
Confidence 3333447888 999999999999999999999999999999999998877753 4689999999999999999998
Q ss_pred HhcC----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh
Q 002183 141 QEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (955)
Q Consensus 141 ~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~ 209 (955)
.+.. .+..++|+... ..+++|+|+||+.+..++.++...+++++++|+||+|.+.+.+++..+..++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~ 170 (203)
T cd00268 91 KLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKL 170 (203)
T ss_pred HHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHh
Confidence 8754 56677887653 237899999999999988888778899999999999999988889999999999
Q ss_pred CCCcceEEEeccccCChHHHHHHHhhhcCCCeE
Q 002183 210 LPPAIKMVFLSATMSNATQFAEWICHLHKQPCH 242 (955)
Q Consensus 210 l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~ 242 (955)
++...|++++|||+++. +.+++.....+++.
T Consensus 171 l~~~~~~~~~SAT~~~~--~~~~~~~~~~~~~~ 201 (203)
T cd00268 171 LPKDRQTLLFSATMPKE--VRDLARKFLRNPVR 201 (203)
T ss_pred CCcccEEEEEeccCCHH--HHHHHHHHCCCCEE
Confidence 99999999999999943 55666665555443
No 101
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.90 E-value=1.6e-22 Score=236.64 Aligned_cols=360 Identities=25% Similarity=0.399 Sum_probs=266.1
Q ss_pred hhhhcCCCCCCHHHHHHHHHH-hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCC-
Q 002183 68 EMAKTYSFELDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD- 145 (955)
Q Consensus 68 ~~~~~~~f~l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~- 145 (955)
.+...|.+ .+|+|.++++.+ ..+++|+|.||+|||||.+++++++. -..-.+++|+.|..+.+..++++|...|+.
T Consensus 1136 ~~~~lf~~-~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1136 SFETLFQD-FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred chhhhccc-cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 33333433 499999999987 78899999999999999999999887 233578999999999999999999998884
Q ss_pred ----eeEEecccccC----CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHH------HhCC
Q 002183 146 ----VGLMTGDVTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESI------IFLP 211 (955)
Q Consensus 146 ----vg~~tGd~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii------~~l~ 211 (955)
+..++|+.+.+ ...+|+|+||+++..+ . ..+.+++.|.||.|.+++ ..|.+++-++ ..+.
T Consensus 1214 ~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~ 1287 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDLKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLE 1287 (1674)
T ss_pred cCceEEecCCccccchHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHH
Confidence 33477877665 3689999999998766 1 578899999999999984 4576655333 3456
Q ss_pred CcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhh
Q 002183 212 PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQK 291 (955)
Q Consensus 212 ~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 291 (955)
++++++++|..+.|+.++ ++... ..+.-+..+.||+|+...+...+ ...+...+....
T Consensus 1288 k~ir~v~ls~~lana~d~---ig~s~-~~v~Nf~p~~R~~Pl~i~i~~~~---------------~~~~~~~~~am~--- 1345 (1674)
T KOG0951|consen 1288 KKIRVVALSSSLANARDL---IGASS-SGVFNFSPSVRPVPLEIHIQSVD---------------ISHFESRMLAMT--- 1345 (1674)
T ss_pred hheeEEEeehhhccchhh---ccccc-cceeecCcccCCCceeEEEEEec---------------cchhHHHHHHhh---
Confidence 889999999999999876 55433 35667778899999986654211 112222221111
Q ss_pred ccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHH
Q 002183 292 IGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAV 371 (955)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~ 371 (955)
.....++.+... +..|++||+++++.|..+|..+-.......+ ..+ -...
T Consensus 1346 ----------------------~~~~~ai~~~a~--~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~--~~l----~~~~ 1395 (1674)
T KOG0951|consen 1346 ----------------------KPTYTAIVRHAG--NRKPAIVFLPTRKHARLVAVDLVTFSHADEP--DYL----LSEL 1395 (1674)
T ss_pred ----------------------hhHHHHHHHHhc--CCCCeEEEeccchhhhhhhhccchhhccCcH--HHH----HHHH
Confidence 112223333322 5679999999999999999888665444311 111 1111
Q ss_pred hhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCC
Q 002183 372 DCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS 451 (955)
Q Consensus 372 ~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~ 451 (955)
.. ....+.+.+..||+ |-||+....+.+-.+|..|.|.|+|...- .+|+-..+--||+.+...|||..
T Consensus 1396 e~---------~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e 1463 (1674)
T KOG0951|consen 1396 EE---------CDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKE 1463 (1674)
T ss_pred hc---------chHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeecccc
Confidence 00 23456778899999 99999999999999999999999999888 99999999999999999999985
Q ss_pred C--cccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCcccccc
Q 002183 452 H--RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTF 506 (955)
Q Consensus 452 ~--~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~f 506 (955)
+ .+.+..+..||.|+|.|. |.|++++... ....+++++. .+-|..|.+
T Consensus 1464 ~~~~~y~i~~ll~m~G~a~~~-----~k~vi~~~~~-~k~yykkfl~-e~lPves~l 1513 (1674)
T KOG0951|consen 1464 HSYEDYPIAELLQMVGLASGA-----GKCVIMCHTP-KKEYYKKFLY-EPLPVESHL 1513 (1674)
T ss_pred cccccCchhHHHHHhhhhcCC-----ccEEEEecCc-hHHHHHHhcc-CcCchHHHH
Confidence 4 466889999999999994 5678887655 4456666643 455666654
No 102
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=3.6e-21 Score=227.86 Aligned_cols=123 Identities=18% Similarity=0.185 Sum_probs=102.2
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----Ce
Q 002183 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~v 146 (955)
..+|..+++.|.-+--.+..|+ |+.++||+|||++|.+|++.....|..|.+++||+.||.|.+..+..++. .+
T Consensus 77 R~lg~~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv 154 (896)
T PRK13104 77 RTLGLRHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTV 154 (896)
T ss_pred HHcCCCcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceE
Confidence 4578788888987777777765 99999999999999999997777788899999999999999999998876 67
Q ss_pred eEEecccccC-----CCCCEEEEeHHHH-HHHHhcCC-ccC-----CccceEEEEccccCC
Q 002183 147 GLMTGDVTLS-----PNASCLVMTTEIL-RGMLYRGS-EVL-----KEVAWVIFDEIHYMK 195 (955)
Q Consensus 147 g~~tGd~~~~-----~~~~IlV~Tpe~L-~~~l~~~~-~~l-----~~l~~vIiDEaH~l~ 195 (955)
|+++|+.+.. -.++|+|+||++| .+.|..+. ..+ +.+.++|+||||.|+
T Consensus 155 ~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 155 GVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred EEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 8888886543 2689999999999 77776552 222 689999999999875
No 103
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.88 E-value=3.8e-22 Score=200.72 Aligned_cols=147 Identities=27% Similarity=0.420 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCC--eEEEEccChhhHHHHHHHHHHhcC----CeeEEec
Q 002183 78 DPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ--RVIYTSPLKALSNQKYRELHQEFK----DVGLMTG 151 (955)
Q Consensus 78 ~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~--~vl~l~PtkaLa~Q~~~~l~~~~~----~vg~~tG 151 (955)
||+|.++++.+.+|+++++.||||+|||+++.++++..+.++. +++|++|+++|++|.++++...+. ++..++|
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999999887654 999999999999999999999987 4677888
Q ss_pred ccccC--------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCC--CcceEEEecc
Q 002183 152 DVTLS--------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP--PAIKMVFLSA 221 (955)
Q Consensus 152 d~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~--~~~~~v~lSA 221 (955)
+.+.. .+++|+|+||+++.+++..+...+.++++|||||+|.+.+..++..+..++..+. .+.+++++||
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SA 160 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSA 160 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEES
T ss_pred cccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEee
Confidence 77532 4799999999999998887544667799999999999998878888888887763 3689999999
Q ss_pred ccC
Q 002183 222 TMS 224 (955)
Q Consensus 222 T~~ 224 (955)
|++
T Consensus 161 T~~ 163 (169)
T PF00270_consen 161 TLP 163 (169)
T ss_dssp SST
T ss_pred CCC
Confidence 998
No 104
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=5.5e-21 Score=211.59 Aligned_cols=360 Identities=20% Similarity=0.230 Sum_probs=235.2
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCchHHH-HHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-CeeEEec---
Q 002183 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAV-AEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTG--- 151 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~-~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~tG--- 151 (955)
....+.+.+..+..++-++|.+.||||||.. +.|........++.+-++.|.|.-|..+.+++.+..+ .+|.-.|
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsI 436 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSI 436 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEE
Confidence 3456677777778899999999999999984 3333333344567889999999999999999988765 3333332
Q ss_pred ---ccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHH------hCCCcceEEEeccc
Q 002183 152 ---DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII------FLPPAIKMVFLSAT 222 (955)
Q Consensus 152 ---d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~------~l~~~~~~v~lSAT 222 (955)
|++ .+...|-+||-++|+.-..... .+.++++||+||||.- .....-++. .-..+.++|..|||
T Consensus 437 RFEdvT-~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHER-----slNtDilfGllk~~larRrdlKliVtSAT 509 (1042)
T KOG0924|consen 437 RFEDVT-SEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHER-----SLNTDILFGLLKKVLARRRDLKLIVTSAT 509 (1042)
T ss_pred EeeecC-CCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhc-----ccchHHHHHHHHHHHHhhccceEEEeecc
Confidence 222 3667889999999876544333 4789999999999943 322222221 22457899999999
Q ss_pred cCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCC
Q 002183 223 MSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKAS 302 (955)
Q Consensus 223 ~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 302 (955)
+ |+..|++|++ .|..+.-..|.-|++..... .+. +.|....
T Consensus 510 m-~a~kf~nfFg-----n~p~f~IpGRTyPV~~~~~k----------~p~-----eDYVeaa------------------ 550 (1042)
T KOG0924|consen 510 M-DAQKFSNFFG-----NCPQFTIPGRTYPVEIMYTK----------TPV-----EDYVEAA------------------ 550 (1042)
T ss_pred c-cHHHHHHHhC-----CCceeeecCCccceEEEecc----------Cch-----HHHHHHH------------------
Confidence 9 7888999987 34445555565555432110 011 1111110
Q ss_pred CCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHHHhhccccc
Q 002183 303 GRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK----LDFNTQEEKDTVEQVFQNAVDCLNEED 378 (955)
Q Consensus 303 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~----~~~~~~~e~~~i~~~~~~~~~~l~~~d 378 (955)
+...+........+.++||.......+-.+..+.. +.... .
T Consensus 551 --------------vkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~---------------------~ 595 (1042)
T KOG0924|consen 551 --------------VKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP---------------------T 595 (1042)
T ss_pred --------------HhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC---------------------C
Confidence 00111111112346799999988766655554432 21110 0
Q ss_pred CCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecce----eccCC----
Q 002183 379 RNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK----KWDGD---- 450 (955)
Q Consensus 379 ~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~----~~d~~---- 450 (955)
+ ...|..+++.|+...+..+...-..|..+|+|||++++..+.+|.+.+||.... .|+..
T Consensus 596 ~------------~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D 663 (1042)
T KOG0924|consen 596 T------------DLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMD 663 (1042)
T ss_pred C------------ceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccc
Confidence 0 113778899999999999988888999999999999999999999999996542 34333
Q ss_pred --CCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCcccccccCcHHHHHHhhhc--ccch---
Q 002183 451 --SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSR--AEGQ--- 523 (955)
Q Consensus 451 --~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~f~~~~~~il~ll~~--~~~~--- 523 (955)
...|+|.+.-.||+|||||.|. |.|+-++++. .....++....+.++.. .-.|++|-|... .++.
T Consensus 664 ~L~~~pIS~AnA~QRaGRAGRt~p---G~cYRlYTe~---ay~~eml~stvPEIqRT--Nl~nvVLlLkslgV~dll~Fd 735 (1042)
T KOG0924|consen 664 ALQIVPISQANADQRAGRAGRTGP---GTCYRLYTED---AYKNEMLPSTVPEIQRT--NLSNVVLLLKSLGVDDLLKFD 735 (1042)
T ss_pred eeEEEechhccchhhccccCCCCC---cceeeehhhh---HHHhhcccCCCchhhhc--chhhHHHHHHhcChhhhhCCC
Confidence 3468889999999999999985 9999999764 34455665555555421 223566555432 1111
Q ss_pred ---hhHHHHHHhhHHHH
Q 002183 524 ---FTAEHVIKNSFHQF 537 (955)
Q Consensus 524 ---~~~~~~l~~sf~~~ 537 (955)
-.|++.|..|+++.
T Consensus 736 FmD~Pped~~~~sly~L 752 (1042)
T KOG0924|consen 736 FMDPPPEDNLLNSLYQL 752 (1042)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 13566666666543
No 105
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=6.8e-21 Score=225.53 Aligned_cols=350 Identities=15% Similarity=0.141 Sum_probs=218.3
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----Ce
Q 002183 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~v 146 (955)
..+|..|++.|.-+--.+.+|+ +..+.||+|||++|.+|++.....|..|-+++|+..||.|-+..+..+|. .+
T Consensus 76 R~lg~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv 153 (830)
T PRK12904 76 RVLGMRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSV 153 (830)
T ss_pred HHhCCCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeE
Confidence 4578889999998888888775 99999999999999999964444566788999999999999999998876 67
Q ss_pred eEEecccccCC-----CCCEEEEeHHHH-HHHHhcCC------ccCCccceEEEEccccCC-CCCChHH-----------
Q 002183 147 GLMTGDVTLSP-----NASCLVMTTEIL-RGMLYRGS------EVLKEVAWVIFDEIHYMK-DRERGVV----------- 202 (955)
Q Consensus 147 g~~tGd~~~~~-----~~~IlV~Tpe~L-~~~l~~~~------~~l~~l~~vIiDEaH~l~-d~~rg~~----------- 202 (955)
|+++|+.+... .++|+++|+..| .+.|.... ...+.+.++|+||||.|+ |..+.+.
T Consensus 154 ~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~ 233 (830)
T PRK12904 154 GVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSE 233 (830)
T ss_pred EEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccH
Confidence 88888765432 589999999999 77765443 236789999999999875 4322211
Q ss_pred ----HHHHHHhCCC--------cceEEEeccc-------------cCCh--HHHHHHHhhh-------cCCCeEEEec--
Q 002183 203 ----WEESIIFLPP--------AIKMVFLSAT-------------MSNA--TQFAEWICHL-------HKQPCHVVYT-- 246 (955)
Q Consensus 203 ----~~~ii~~l~~--------~~~~v~lSAT-------------~~n~--~~~~~~l~~~-------~~~~~~v~~~-- 246 (955)
+..+...+.. ..+.+.||.. +-+. .++..|+..- ..+.-+++..
T Consensus 234 ~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~ 313 (830)
T PRK12904 234 LYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGE 313 (830)
T ss_pred HHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCE
Confidence 1223333321 2233444421 1111 1233444321 1111111110
Q ss_pred -----C--CC----------------------ccc---------------ceEEEeecCCCceEEeecccchhchhhHHH
Q 002183 247 -----D--FR----------------------PTP---------------LQHYVFPVGGSGLYLVVDEKEQFREDNFVK 282 (955)
Q Consensus 247 -----~--~r----------------------p~p---------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (955)
. .| .+| +-..+.--.+.-. .+ ...|.+
T Consensus 314 V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~----te-----~~E~~~ 384 (830)
T PRK12904 314 VVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTAD----TE-----AEEFRE 384 (830)
T ss_pred EEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcH----HH-----HHHHHH
Confidence 0 00 000 0111211111000 00 001111
Q ss_pred HHHHHHHhhccCCccCCCCCCCccCCC--CCCCCCcHHHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCCCCCHH
Q 002183 283 LQDTFLKQKIGGRRENGKASGRMAKGG--SGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQE 358 (955)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~ 358 (955)
.+. -....-|. ..+..+..... -......+..+++.+.+ ..+.|+||||.|+..++.++..|...+++
T Consensus 385 iY~---l~vv~IPt--nkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~--- 456 (830)
T PRK12904 385 IYN---LDVVVIPT--NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIP--- 456 (830)
T ss_pred HhC---CCEEEcCC--CCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCc---
Confidence 110 00000000 00000000000 01122345566666644 56789999999999999999999887665
Q ss_pred HHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCc-
Q 002183 359 EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAK- 437 (955)
Q Consensus 359 e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~- 437 (955)
..++||. +.+|+..+..|+.|...|+|||++++||+|++--
T Consensus 457 ------------------------------------~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgG 498 (830)
T PRK12904 457 ------------------------------------HNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGG 498 (830)
T ss_pred ------------------------------------eEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCC
Confidence 4678995 8899999999999999999999999999999753
Q ss_pred -----------------------------E--------EEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEE
Q 002183 438 -----------------------------T--------VVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICII 480 (955)
Q Consensus 438 -----------------------------~--------vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii 480 (955)
. +|| ...++-|..-=-|..|||||-|..|.+..|+
T Consensus 499 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVi--------gTerhesrRid~QlrGRagRQGdpGss~f~l 570 (830)
T PRK12904 499 NPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVI--------GTERHESRRIDNQLRGRSGRQGDPGSSRFYL 570 (830)
T ss_pred chhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEE--------ecccCchHHHHHHhhcccccCCCCCceeEEE
Confidence 1 233 2445667777889999999999988888888
Q ss_pred EeCCc
Q 002183 481 MVDEQ 485 (955)
Q Consensus 481 ~~~~~ 485 (955)
...+.
T Consensus 571 SleD~ 575 (830)
T PRK12904 571 SLEDD 575 (830)
T ss_pred EcCcH
Confidence 77654
No 106
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=3e-21 Score=213.58 Aligned_cols=319 Identities=18% Similarity=0.263 Sum_probs=225.1
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHH-HHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhcC-CeeEEec
Q 002183 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVA-EYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTG 151 (955)
Q Consensus 75 f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~-~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~tG 151 (955)
.+..++-.+.+.++..++-+++.|.||||||... +|..-... ..|.++-++.|.|--|..+..+..+..+ +.|.-.|
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 3467778888999999999999999999999852 11111122 2345699999999999999888877655 4433333
Q ss_pred c-----cccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHH------HHhCCCcceEEEec
Q 002183 152 D-----VTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES------IIFLPPAIKMVFLS 220 (955)
Q Consensus 152 d-----~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~i------i~~l~~~~~~v~lS 220 (955)
- .......-|-+||.++|..-+...++ +..++++|+||||. |.....-+ |....++..++..|
T Consensus 344 YsIRFEdcTSekTvlKYMTDGmLlREfL~epd-LasYSViiiDEAHE-----RTL~TDILfgLvKDIar~RpdLKllIsS 417 (902)
T KOG0923|consen 344 YSIRFEDCTSEKTVLKYMTDGMLLREFLSEPD-LASYSVIIVDEAHE-----RTLHTDILFGLVKDIARFRPDLKLLISS 417 (902)
T ss_pred eEEEeccccCcceeeeeecchhHHHHHhcccc-ccceeEEEeehhhh-----hhhhhhHHHHHHHHHHhhCCcceEEeec
Confidence 1 12235567889999999877665554 88999999999993 33333322 23456789999999
Q ss_pred cccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCC
Q 002183 221 ATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGK 300 (955)
Q Consensus 221 AT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 300 (955)
||+ +++.|..|++ .+.|+....|.-|+..+.-. .+. .+|..+
T Consensus 418 AT~-DAekFS~fFD-----dapIF~iPGRRyPVdi~Yt~----------~PE-----AdYldA----------------- 459 (902)
T KOG0923|consen 418 ATM-DAEKFSAFFD-----DAPIFRIPGRRYPVDIFYTK----------APE-----ADYLDA----------------- 459 (902)
T ss_pred ccc-CHHHHHHhcc-----CCcEEeccCcccceeeeccc----------CCc-----hhHHHH-----------------
Confidence 999 7888999887 45666666676666543211 111 111111
Q ss_pred CCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCC
Q 002183 301 ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRN 380 (955)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 380 (955)
.+..++........+-+|||.....+.+.....|.. ....|...-++
T Consensus 460 ---------------ai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~------------------~~~~LGski~e 506 (902)
T KOG0923|consen 460 ---------------AIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKE------------------RCRRLGSKIRE 506 (902)
T ss_pred ---------------HHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHH------------------HHHHhccccce
Confidence 111122222234567899999999888877766643 12223322222
Q ss_pred chhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecce----eccCCC-----
Q 002183 381 LPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK----KWDGDS----- 451 (955)
Q Consensus 381 ~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~----~~d~~~----- 451 (955)
+- |..+|+.|+...+..|.+--..|-.+|++||++++..|.|+++..||.... .|++..
T Consensus 507 li------------v~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL 574 (902)
T KOG0923|consen 507 LI------------VLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESL 574 (902)
T ss_pred EE------------EeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeE
Confidence 22 778999999999999999999999999999999999999999999997642 355542
Q ss_pred -CcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 452 -HRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 452 -~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
..|.|-+.-.||+|||||.|. |.||-+++..
T Consensus 575 ~v~piSKAsA~QRaGRAGRtgP---GKCfRLYt~~ 606 (902)
T KOG0923|consen 575 LVTPISKASANQRAGRAGRTGP---GKCFRLYTAW 606 (902)
T ss_pred EEeeechhhhhhhccccCCCCC---CceEEeechh
Confidence 247788999999999999996 9999999765
No 107
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.86 E-value=6.8e-21 Score=207.65 Aligned_cols=307 Identities=22% Similarity=0.298 Sum_probs=222.4
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccC-----CCCCEEEEeH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLS-----PNASCLVMTT 166 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~-----~~~~IlV~Tp 166 (955)
+-++-++||.||||.-| ++.+....+.+|.-|.|-||.++|+++.+.+-...++||.-... ..+..+=+|.
T Consensus 192 kIi~H~GPTNSGKTy~A----Lqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~~~~~~~a~hvScTV 267 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRA----LQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFVLDNGNPAQHVSCTV 267 (700)
T ss_pred eEEEEeCCCCCchhHHH----HHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeecCCCCCcccceEEEE
Confidence 44667999999999754 45666678899999999999999999999988999999975432 1467778888
Q ss_pred HHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCC-CcceEEEeccccCChHHHHHHHhhhcCCCeEEEe
Q 002183 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP-PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVY 245 (955)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~-~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~ 245 (955)
|+.. .-..+++.|+||+++|.|+.||-.|...+..+. +.+.+.+=-|- .++-.-+....++.+. +.
T Consensus 268 EM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsv----ldlV~~i~k~TGd~ve-v~ 334 (700)
T KOG0953|consen 268 EMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSV----LDLVRKILKMTGDDVE-VR 334 (700)
T ss_pred EEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchH----HHHHHHHHhhcCCeeE-EE
Confidence 7552 234678999999999999999999988775443 33333332222 2233333333343333 22
Q ss_pred cCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHH
Q 002183 246 TDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIM 325 (955)
Q Consensus 246 ~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 325 (955)
...|-.||... ..++..+.
T Consensus 335 ~YeRl~pL~v~-------------------------------------------------------------~~~~~sl~ 353 (700)
T KOG0953|consen 335 EYERLSPLVVE-------------------------------------------------------------ETALGSLS 353 (700)
T ss_pred eecccCcceeh-------------------------------------------------------------hhhhhhhc
Confidence 33344443210 01112222
Q ss_pred HcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHH
Q 002183 326 ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPV 405 (955)
Q Consensus 326 ~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~ 405 (955)
.-..+-+ |.|||++....+...+.+.+.. .+++++|+|+|+
T Consensus 354 nlk~GDC-vV~FSkk~I~~~k~kIE~~g~~--------------------------------------k~aVIYGsLPPe 394 (700)
T KOG0953|consen 354 NLKPGDC-VVAFSKKDIFTVKKKIEKAGNH--------------------------------------KCAVIYGSLPPE 394 (700)
T ss_pred cCCCCCe-EEEeehhhHHHHHHHHHHhcCc--------------------------------------ceEEEecCCCCc
Confidence 2233445 4588999999988888664322 278999999999
Q ss_pred HHHHHHHHHhc--CCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCC-CceEEEEEe
Q 002183 406 IKELVELLFQE--GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD-DRGICIIMV 482 (955)
Q Consensus 406 ~R~~v~~~F~~--g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~-~~g~~ii~~ 482 (955)
.|..--.+|.+ +..+||||||+.+||+|+.-.++||.+..+|+|..-.+++..+..|.+|||||.|.. ..|.+-.+.
T Consensus 395 Tr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~ 474 (700)
T KOG0953|consen 395 TRLAQAALFNDPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLH 474 (700)
T ss_pred hhHHHHHHhCCCCCccceEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEee
Confidence 99999999997 899999999999999999999999999999999999999999999999999999753 346665554
Q ss_pred CCcccHHHHHHhHhCCCCccc-ccccCcHHHHHHhh
Q 002183 483 DEQMEMNTLKDMVLGKPAPLV-STFRLSYYSILNLM 517 (955)
Q Consensus 483 ~~~~~~~~~~~l~~~~~~~l~-s~f~~~~~~il~ll 517 (955)
.+ +...+++.+....+|+. ..+..++..+-.++
T Consensus 475 ~e--DL~~L~~~l~~p~epi~~agl~pt~eqie~fa 508 (700)
T KOG0953|consen 475 SE--DLKLLKRILKRPVEPIKNAGLWPTDEQIELFA 508 (700)
T ss_pred Hh--hHHHHHHHHhCCchHHHhccCCccHHHHHHHH
Confidence 33 57788888888888874 45566665554443
No 108
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.4e-20 Score=222.02 Aligned_cols=350 Identities=19% Similarity=0.183 Sum_probs=216.5
Q ss_pred hhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----C
Q 002183 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----D 145 (955)
Q Consensus 70 ~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~ 145 (955)
...+|..|++.|.-+--.+..|+ |....||+|||+++.+|++.....|..|-+++|+--||.|=+..+..+|. .
T Consensus 74 ~R~~g~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~ 151 (796)
T PRK12906 74 KRVLGLRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLT 151 (796)
T ss_pred HHHhCCCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCe
Confidence 35678889999998888888876 99999999999999999999999999999999999999999998888766 6
Q ss_pred eeEEecccccC-----CCCCEEEEeHHHH-----HHHHh--cCCccCCccceEEEEccccCC-CCCChHH----------
Q 002183 146 VGLMTGDVTLS-----PNASCLVMTTEIL-----RGMLY--RGSEVLKEVAWVIFDEIHYMK-DRERGVV---------- 202 (955)
Q Consensus 146 vg~~tGd~~~~-----~~~~IlV~Tpe~L-----~~~l~--~~~~~l~~l~~vIiDEaH~l~-d~~rg~~---------- 202 (955)
||+++|+.+.. -.++|+.+|..-+ ++-+. ......+.+.+.|+||||.++ |..+.+.
T Consensus 152 vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~ 231 (796)
T PRK12906 152 VGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKAT 231 (796)
T ss_pred EEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcch
Confidence 78888876443 2689999998654 33221 112234678899999999764 3222211
Q ss_pred -----HHHHHHhCCC-------------------cceEEEeccc----------cCC---h--HHHHHHHhhh-------
Q 002183 203 -----WEESIIFLPP-------------------AIKMVFLSAT----------MSN---A--TQFAEWICHL------- 236 (955)
Q Consensus 203 -----~~~ii~~l~~-------------------~~~~v~lSAT----------~~n---~--~~~~~~l~~~------- 236 (955)
+..+...+.. ..+.+.+|.. ++| . ..+..|+..-
T Consensus 232 ~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~ 311 (796)
T PRK12906 232 DLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIM 311 (796)
T ss_pred HHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHH
Confidence 1112222211 1122333310 111 1 1234555421
Q ss_pred cCC--------CeEEEec-CCC----------------------ccc---------------ceEEEeecCCCceEEeec
Q 002183 237 HKQ--------PCHVVYT-DFR----------------------PTP---------------LQHYVFPVGGSGLYLVVD 270 (955)
Q Consensus 237 ~~~--------~~~v~~~-~~r----------------------p~p---------------l~~~~~~~~~~~~~~~~~ 270 (955)
..+ .+.++.. ..| .+| +-..++--.|.-. .
T Consensus 312 ~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~----~ 387 (796)
T PRK12906 312 LKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK----T 387 (796)
T ss_pred hcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH----H
Confidence 111 1111110 000 000 0112221111100 0
Q ss_pred ccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCC--CCCCCCcHHHHHHHHHH--cCCCcEEEEEcChHHHHHHH
Q 002183 271 EKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGG--SGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHA 346 (955)
Q Consensus 271 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la 346 (955)
+ ...|.+.+. -....-|. ..+..+..... -......+..+++.+.. ..+.|+||||.|+..++.++
T Consensus 388 e-----~~Ef~~iY~---l~vv~IPt--nkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls 457 (796)
T PRK12906 388 E-----EEEFREIYN---MEVITIPT--NRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLS 457 (796)
T ss_pred H-----HHHHHHHhC---CCEEEcCC--CCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHH
Confidence 0 001111100 00000010 00000000000 00112344566666643 36789999999999999999
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcc
Q 002183 347 MSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATE 426 (955)
Q Consensus 347 ~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~ 426 (955)
..|.+.++. ..++||++...+++.+-..++.|. |+|||+
T Consensus 458 ~~L~~~gi~---------------------------------------~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATn 496 (796)
T PRK12906 458 HLLDEAGIP---------------------------------------HAVLNAKNHAKEAEIIMNAGQRGA--VTIATN 496 (796)
T ss_pred HHHHHCCCC---------------------------------------eeEecCCcHHHHHHHHHhcCCCce--EEEEec
Confidence 999887665 468999999888888888888887 999999
Q ss_pred cccccCCCC---CcE-----EEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCC
Q 002183 427 TFAMGLNMP---AKT-----VVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 427 ~la~Gidip---~~~-----vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~ 484 (955)
+++||+||+ ++. +|| .++. |.+...|.|+.|||||.|..|.+..|+...+
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI----~te~----pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVI----GTER----HESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEE----eeec----CCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 999999994 888 999 5555 8899999999999999999766666665544
No 109
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.4e-19 Score=212.86 Aligned_cols=357 Identities=19% Similarity=0.165 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHhcC----CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-CeeEEe
Q 002183 76 ELDPFQRVSVACLERN----ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMT 150 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g----~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~t 150 (955)
.+++.|..|+..+... ...++.+.||||||-+|+-+|...+..|+.+|+++|-.+|-.|...+|+..|+ ++++++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlH 277 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLH 277 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhc
Confidence 5899999999998544 67899999999999999999999999999999999999999999999999999 889998
Q ss_pred ccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCC---ChHHHHH--HHHhCCCcc
Q 002183 151 GDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE---RGVVWEE--SIIFLPPAI 214 (955)
Q Consensus 151 Gd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~---rg~~~~~--ii~~l~~~~ 214 (955)
++.+- +.++.|+|+|-..+. ..++++++||+||-|.-.-.. -...... ++..-..++
T Consensus 278 S~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~ 350 (730)
T COG1198 278 SGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENA 350 (730)
T ss_pred ccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCC
Confidence 87753 457899999966553 458899999999999654221 1111122 223334578
Q ss_pred eEEEeccccCChHHHHHHHhhhcCCCeEEEecCCC--cccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhc
Q 002183 215 KMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR--PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKI 292 (955)
Q Consensus 215 ~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (955)
++|+-|||++ +..|.....+....+..+..- ..+....+ +|.+.....
T Consensus 351 pvvLgSATPS----LES~~~~~~g~y~~~~L~~R~~~a~~p~v~i-----------iDmr~e~~~--------------- 400 (730)
T COG1198 351 PVVLGSATPS----LESYANAESGKYKLLRLTNRAGRARLPRVEI-----------IDMRKEPLE--------------- 400 (730)
T ss_pred CEEEecCCCC----HHHHHhhhcCceEEEEccccccccCCCcceE-----------Eeccccccc---------------
Confidence 9999999997 446665544433333332211 11111111 111110000
Q ss_pred cCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCCCCC---H------HHHH
Q 002183 293 GGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNT---Q------EEKD 361 (955)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~~~~---~------~e~~ 361 (955)
.+.. --..+++.+.+ ..+.++|+|.|.|..+-.+...=+..-+.+ + ...
T Consensus 401 ---------------~~~~----lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~- 460 (730)
T COG1198 401 ---------------TGRS----LSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKAT- 460 (730)
T ss_pred ---------------cCcc----CCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCC-
Confidence 0000 11233333322 245789999999876544432111100000 0 000
Q ss_pred HHHHHHHHHHhhcccccCC------------chhHHhH----HHHh-hcCeEeecCCCCHH--HHHHHHHHHhcCCccEE
Q 002183 362 TVEQVFQNAVDCLNEEDRN------------LPAIELM----LPLL-KRGIAVHHSGLLPV--IKELVELLFQEGLVKAL 422 (955)
Q Consensus 362 ~i~~~~~~~~~~l~~~d~~------------~~~~~~~----~~~l-~~gi~~~H~~l~~~--~R~~v~~~F~~g~i~VL 422 (955)
....+.+...-...-.. .+..+.+ ..++ ...|..+-++.... .-+..+..|.+|+++||
T Consensus 461 --~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dIL 538 (730)
T COG1198 461 --GQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADIL 538 (730)
T ss_pred --CeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCee
Confidence 00000000000000000 0011111 1111 23455666665443 34667889999999999
Q ss_pred EEcccccccCCCCCcEEE--EecceeccCCCCccc--CHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHh
Q 002183 423 FATETFAMGLNMPAKTVV--FTAVKKWDGDSHRYI--GSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDM 494 (955)
Q Consensus 423 vaT~~la~Gidip~~~vV--i~~~~~~d~~~~~~~--s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l 494 (955)
+.|.+++.|.|+|+++.| +..+.-....++|.. ...-++|-+|||||.++ .|.+++.+... +...++.+
T Consensus 539 iGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~--~G~VvIQT~~P-~hp~i~~~ 611 (730)
T COG1198 539 IGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGK--PGEVVIQTYNP-DHPAIQAL 611 (730)
T ss_pred ecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCC--CCeEEEEeCCC-CcHHHHHH
Confidence 999999999999999965 433333233333322 35678999999999987 57788776544 33344433
No 110
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.85 E-value=2.4e-19 Score=219.22 Aligned_cols=361 Identities=14% Similarity=0.106 Sum_probs=217.3
Q ss_pred CCCCHHHHHHHHHH----hcCCcEEEEcCCCCchHHHHHHHHHHHHh---cCCeEEEEccChhhHHHHHHHHHHhcC--C
Q 002183 75 FELDPFQRVSVACL----ERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFK--D 145 (955)
Q Consensus 75 f~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~~~~~i~~~l~---~~~~vl~l~PtkaLa~Q~~~~l~~~~~--~ 145 (955)
.+|.|||.+++..+ .+|.+.|++..+|.|||+.+...+..... ..+++||++|. +|..||.++|..+++ .
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~ 246 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLR 246 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCc
Confidence 36999999999886 46788999999999999977544433222 23578999996 778889999999988 4
Q ss_pred eeEEeccccc----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcce
Q 002183 146 VGLMTGDVTL----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK 215 (955)
Q Consensus 146 vg~~tGd~~~----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~ 215 (955)
+..++|+... ....+|+|+|++.+...... ..--.+++||+||||++.+. .......+..+.. ..
T Consensus 247 v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~a-~~ 321 (1033)
T PLN03142 247 AVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFST-NY 321 (1033)
T ss_pred eEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHHHHhhc-Cc
Confidence 5666775421 23578999999998754321 11235789999999999875 3445555666654 34
Q ss_pred EEEeccccC--ChHHHHHHHhhhcCCCeEE---------Eec-------------CCCcccceE------EEeecCCCce
Q 002183 216 MVFLSATMS--NATQFAEWICHLHKQPCHV---------VYT-------------DFRPTPLQH------YVFPVGGSGL 265 (955)
Q Consensus 216 ~v~lSAT~~--n~~~~~~~l~~~~~~~~~v---------~~~-------------~~rp~pl~~------~~~~~~~~~~ 265 (955)
.++||+|+- +..++...+..+......- ... -.+|.-+.. .-+|... ..
T Consensus 322 RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~-e~ 400 (1033)
T PLN03142 322 RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKK-ET 400 (1033)
T ss_pred EEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCce-eE
Confidence 689999973 3344444433221100000 000 000000000 0000000 00
Q ss_pred EEeecccchhchhhHHHHH--------------------HHHHHhhccCCccCCCC-CCCc-cCCC----CCCCCCcHHH
Q 002183 266 YLVVDEKEQFREDNFVKLQ--------------------DTFLKQKIGGRRENGKA-SGRM-AKGG----SGSGGSDIFK 319 (955)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~--------------------~~l~~~~~~~~~~~~~~-~~~~-~~~~----~~~~~~~~~~ 319 (955)
.+.+.. ......-|...+ ..+.. ....|.-..+. .... ..+. .......+..
T Consensus 401 iv~v~L-S~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk-~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdk 478 (1033)
T PLN03142 401 ILKVGM-SQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRK-CCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDK 478 (1033)
T ss_pred EEeeCC-CHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HhCCHHhhhcccccCcccchhHHhhhhhHHHHHHH
Confidence 000110 000001111111 01100 00011000000 0000 0000 0000111222
Q ss_pred HHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeec
Q 002183 320 IVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHH 399 (955)
Q Consensus 320 l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H 399 (955)
++..+.. .+.++|||+......+.+...|...++. +..+|
T Consensus 479 LL~~Lk~-~g~KVLIFSQft~~LdiLed~L~~~g~~---------------------------------------y~rId 518 (1033)
T PLN03142 479 LLPKLKE-RDSRVLIFSQMTRLLDILEDYLMYRGYQ---------------------------------------YCRID 518 (1033)
T ss_pred HHHHHHh-cCCeEEeehhHHHHHHHHHHHHHHcCCc---------------------------------------EEEEC
Confidence 3333332 4579999999988888888777654433 67889
Q ss_pred CCCCHHHHHHHHHHHhcC---CccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCce
Q 002183 400 SGLLPVIKELVELLFQEG---LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRG 476 (955)
Q Consensus 400 ~~l~~~~R~~v~~~F~~g---~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g 476 (955)
|+++..+|..+++.|.+. ..-+|++|.+++.|||+...++|| .||. +++|....|+.||+.|.|+....
T Consensus 519 Gsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VI----iyD~----dWNP~~d~QAidRaHRIGQkk~V 590 (1033)
T PLN03142 519 GNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVI----LYDS----DWNPQVDLQAQDRAHRIGQKKEV 590 (1033)
T ss_pred CCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEE----EeCC----CCChHHHHHHHHHhhhcCCCceE
Confidence 999999999999999753 345789999999999999999999 8998 99999999999999999998888
Q ss_pred EEEEEeCCc-ccHHHHH
Q 002183 477 ICIIMVDEQ-MEMNTLK 492 (955)
Q Consensus 477 ~~ii~~~~~-~~~~~~~ 492 (955)
.++.++... .+...+.
T Consensus 591 ~VyRLIt~gTIEEkIle 607 (1033)
T PLN03142 591 QVFRFCTEYTIEEKVIE 607 (1033)
T ss_pred EEEEEEeCCcHHHHHHH
Confidence 888877655 4444443
No 111
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.84 E-value=1.7e-19 Score=213.69 Aligned_cols=345 Identities=20% Similarity=0.214 Sum_probs=232.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHH-h--cCCeEEEEccChhhHHHHHHHHHHhc-C----Cee
Q 002183 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-R--DKQRVIYTSPLKALSNQKYRELHQEF-K----DVG 147 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l-~--~~~~vl~l~PtkaLa~Q~~~~l~~~~-~----~vg 147 (955)
..+..+.+.+.++.+++.+++++.||+|||...---|+... . ...+++++.|.|--|--++++....- . .||
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 35678888899999999999999999999986444444432 2 34679999999877777776665432 2 344
Q ss_pred EEec-ccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCC-CCCChHHHHHHHHhCCCcceEEEeccccCC
Q 002183 148 LMTG-DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK-DRERGVVWEESIIFLPPAIKMVFLSATMSN 225 (955)
Q Consensus 148 ~~tG-d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~-d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n 225 (955)
.-.+ +........+++||++.|+..+..+ ..+.++..||+||+|.=. +.++-...-..+....++.++|+||||+ |
T Consensus 253 Yqvrl~~~~s~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~-d 330 (924)
T KOG0920|consen 253 YQVRLESKRSRETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATL-D 330 (924)
T ss_pred EEEeeecccCCceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeec-c
Confidence 4222 2333446899999999999988774 458899999999999543 3333333334444556899999999999 5
Q ss_pred hHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCC-
Q 002183 226 ATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGR- 304 (955)
Q Consensus 226 ~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~- 304 (955)
++.|.++++ .+.++....+.-|+..+... ..+............ ..+....
T Consensus 331 ae~fs~YF~-----~~pvi~i~grtfpV~~~fLE----------------------Dil~~~~~~~~~~~~-~~~~~~~~ 382 (924)
T KOG0920|consen 331 AELFSDYFG-----GCPVITIPGRTFPVKEYFLE----------------------DILSKTGYVSEDDSA-RSGPERSQ 382 (924)
T ss_pred hHHHHHHhC-----CCceEeecCCCcchHHHHHH----------------------HHHHHhccccccccc-ccccccCc
Confidence 778888887 34555555555554432110 000000000000000 0000000
Q ss_pred -c---cCC-CCCCCCCcHHHHHHHHHHc-CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhccccc
Q 002183 305 -M---AKG-GSGSGGSDIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEED 378 (955)
Q Consensus 305 -~---~~~-~~~~~~~~~~~l~~~l~~~-~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d 378 (955)
. ..- ...-+..-+..++..+.+. ..+.+|||.++..++..+...|.......+.
T Consensus 383 ~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~-------------------- 442 (924)
T KOG0920|consen 383 LRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS-------------------- 442 (924)
T ss_pred cccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc--------------------
Confidence 0 000 0011223344555555554 3688999999999999999999653322110
Q ss_pred CCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecce----eccCCC---
Q 002183 379 RNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK----KWDGDS--- 451 (955)
Q Consensus 379 ~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~----~~d~~~--- 451 (955)
.+.-|-..|+.|+..+++.|...-..|..+|++||+.++.+|.||++..||.+.. .||...
T Consensus 443 ------------~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s 510 (924)
T KOG0920|consen 443 ------------LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVS 510 (924)
T ss_pred ------------cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcc
Confidence 0112678899999999999999999999999999999999999999999998764 577753
Q ss_pred ---CcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 452 ---HRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 452 ---~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
..|.+...-.||.|||||--. |+||-+++..
T Consensus 511 ~l~~~wvSkAna~QR~GRAGRv~~---G~cy~L~~~~ 544 (924)
T KOG0920|consen 511 CLLLSWVSKANAKQRRGRAGRVRP---GICYHLYTRS 544 (924)
T ss_pred hhheeeccccchHHhcccccCccC---CeeEEeechh
Confidence 246678899999999999864 9999998765
No 112
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.83 E-value=2.6e-19 Score=217.90 Aligned_cols=312 Identities=19% Similarity=0.190 Sum_probs=199.6
Q ss_pred CCCHHHHHHHHHHhc---CC-cEEEEcCCCCchHHHHHHHHHHHHhc----CCeEEEEccChhhHHHHHHHHHHhcCCee
Q 002183 76 ELDPFQRVSVACLER---NE-SVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVG 147 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~---g~-~vlv~apTGsGKTl~~~~~i~~~l~~----~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg 147 (955)
...++|..++..+.+ .. .+++.||||+|||.+++.+....+.. ..+++|+.|++++.+++++.+++.++.-+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 458999999988633 34 78899999999999998877666654 68999999999999999999999877322
Q ss_pred EE----eccccc---CC------------------CCCEEEEeHHHHHHHHhcCCcc--CC--ccceEEEEccccCCCCC
Q 002183 148 LM----TGDVTL---SP------------------NASCLVMTTEILRGMLYRGSEV--LK--EVAWVIFDEIHYMKDRE 198 (955)
Q Consensus 148 ~~----tGd~~~---~~------------------~~~IlV~Tpe~L~~~l~~~~~~--l~--~l~~vIiDEaH~l~d~~ 198 (955)
.. .|.... +. -..+.++||-....+....... +. -.+.+||||+|.+.+..
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 22 332211 00 1233444444443322222111 11 24789999999998763
Q ss_pred ChHHHHHHHHhC-CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhch
Q 002183 199 RGVVWEESIIFL-PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFRE 277 (955)
Q Consensus 199 rg~~~~~ii~~l-~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~ 277 (955)
--.....++..+ .-+..+|++|||+|.. +.+.+.........+..... ..|.... ..........
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~--~~~~l~~~~~~~~~~~~~~~-~~~~~~e--------~~~~~~~~~~--- 420 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPF--LKEKLKKALGKGREVVENAK-FCPKEDE--------PGLKRKERVD--- 420 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHH--HHHHHHHHHhcccceecccc-ccccccc--------cccccccchh---
Confidence 222333333333 3478899999999955 44555544433333222211 0000000 0000000000
Q ss_pred hhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHH--HHHcCCCcEEEEEcChHHHHHHHHHhccCCCC
Q 002183 278 DNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKM--IMERKFQPVIVFSFSRRECEQHAMSMSKLDFN 355 (955)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~ 355 (955)
+.. ......... ..-..+.+++|-|||+..|..+...|+..+.
T Consensus 421 --~~~--------------------------------~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~- 465 (733)
T COG1203 421 --VED--------------------------------GPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP- 465 (733)
T ss_pred --hhh--------------------------------hhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC-
Confidence 000 000001111 1112457899999999999999999987544
Q ss_pred CHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHh----cCCccEEEEccccccc
Q 002183 356 TQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQ----EGLVKALFATETFAMG 431 (955)
Q Consensus 356 ~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~----~g~i~VLvaT~~la~G 431 (955)
.+..+||.+....|...++.+. .+...|+|||++.+.|
T Consensus 466 --------------------------------------~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEag 507 (733)
T COG1203 466 --------------------------------------KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAG 507 (733)
T ss_pred --------------------------------------CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEE
Confidence 1789999999999999988654 5678899999999999
Q ss_pred CCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 432 LNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 432 idip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
+|+. .+++|+. +......+||+||++|.|.+..|.+++.....
T Consensus 508 vDid-fd~mITe----------~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 508 VDID-FDVLITE----------LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred eccc-cCeeeec----------CCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 9996 6777754 33566799999999999976677777776544
No 113
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.1e-17 Score=197.72 Aligned_cols=121 Identities=13% Similarity=0.202 Sum_probs=103.9
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----CeeEEe
Q 002183 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DVGLMT 150 (955)
Q Consensus 75 f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~vg~~t 150 (955)
|.++|+|.++++.+..++++++.|+||+|||++|.+|++..+..+..+++++||++||.|..+.+..++. .++.++
T Consensus 91 ~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~ 170 (970)
T PRK12899 91 WDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLV 170 (970)
T ss_pred CCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 3459999999999999999999999999999999999997776666799999999999999999988765 577888
Q ss_pred cccccCC-----CCCEEEEeHHHH-HHHHhcCCccCC-------ccceEEEEccccCC
Q 002183 151 GDVTLSP-----NASCLVMTTEIL-RGMLYRGSEVLK-------EVAWVIFDEIHYMK 195 (955)
Q Consensus 151 Gd~~~~~-----~~~IlV~Tpe~L-~~~l~~~~~~l~-------~l~~vIiDEaH~l~ 195 (955)
|+.+... .++|+|+||++| .+++..+...++ .+.++|+||||.|+
T Consensus 171 GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 171 SGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 8876532 589999999999 888887644443 56899999999876
No 114
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=4e-18 Score=201.47 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=99.8
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----Ce
Q 002183 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~v 146 (955)
..+|..|++.|.-+--.+.+|+ |..++||.|||++|.+|++.....|..|.|++|+..||.|-.+.+..+|. .+
T Consensus 77 R~lgm~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv 154 (908)
T PRK13107 77 RVFEMRHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTV 154 (908)
T ss_pred HHhCCCcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 4678888899987766666665 89999999999999999988878888899999999999999888887765 67
Q ss_pred eEEecccccCC-----CCCEEEEeHHHH-HHHHhcC-Cc-----cCCccceEEEEccccCC
Q 002183 147 GLMTGDVTLSP-----NASCLVMTTEIL-RGMLYRG-SE-----VLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 147 g~~tGd~~~~~-----~~~IlV~Tpe~L-~~~l~~~-~~-----~l~~l~~vIiDEaH~l~ 195 (955)
|+++|+.+... .++|+++||..| .+.|..+ .. ..+.+.++|+||||.++
T Consensus 155 ~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 155 GINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred EEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 77777765322 689999999998 6666544 21 23778999999999876
No 115
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=9.3e-19 Score=197.25 Aligned_cols=345 Identities=20% Similarity=0.238 Sum_probs=212.4
Q ss_pred HHHHHHHhcCCcEEEEcCCCCchHHH---HHHHHHHHH---hcCCeEEEEccChhhHHHHHHHHHHhcC----CeeE-Ee
Q 002183 82 RVSVACLERNESVLVSAHTSAGKTAV---AEYAIAMAF---RDKQRVIYTSPLKALSNQKYRELHQEFK----DVGL-MT 150 (955)
Q Consensus 82 ~~ai~~l~~g~~vlv~apTGsGKTl~---~~~~i~~~l---~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~vg~-~t 150 (955)
++.+.+|..+.-||||+.||||||.. |+|-.-.+- ..++-+-|+-|.|--|--+.++.....+ .|+. +.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR 341 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR 341 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE
Confidence 35567778888999999999999984 333211111 1245788999999666665555544333 5665 34
Q ss_pred cccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCC----------------Ccc
Q 002183 151 GDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP----------------PAI 214 (955)
Q Consensus 151 Gd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~----------------~~~ 214 (955)
-|.+++++..|.+||.++|+.-+.+.. .+..++.||+|||| +|.....-++.+|. ...
T Consensus 342 fd~ti~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAH-----ERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpL 415 (1172)
T KOG0926|consen 342 FDGTIGEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAH-----ERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPL 415 (1172)
T ss_pred eccccCCCceeEEecchHHHHHHHHhH-hhhhceeEEechhh-----hccchHHHHHHHHHHHHHHHHHHhhhhcccCce
Confidence 466788999999999999987776543 47899999999999 33433333333221 257
Q ss_pred eEEEeccccCChHHHHHHHhhh--cCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhc
Q 002183 215 KMVFLSATMSNATQFAEWICHL--HKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKI 292 (955)
Q Consensus 215 ~~v~lSAT~~n~~~~~~~l~~~--~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (955)
++|.||||+- +.+|-... ...+..++.-+.|.-|...+. -......+...
T Consensus 416 KLIIMSATLR----VsDFtenk~LFpi~pPlikVdARQfPVsIHF----------~krT~~DYi~e-------------- 467 (1172)
T KOG0926|consen 416 KLIIMSATLR----VSDFTENKRLFPIPPPLIKVDARQFPVSIHF----------NKRTPDDYIAE-------------- 467 (1172)
T ss_pred eEEEEeeeEE----ecccccCceecCCCCceeeeecccCceEEEe----------ccCCCchHHHH--------------
Confidence 8999999984 12222111 111222344444443333211 11111111111
Q ss_pred cCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCC---CCCHH-----------
Q 002183 293 GGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLD---FNTQE----------- 358 (955)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~---~~~~~----------- 358 (955)
...+.+....+.+.+.++||+....++++++..|++.. |....
T Consensus 468 -----------------------AfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~ 524 (1172)
T KOG0926|consen 468 -----------------------AFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKEL 524 (1172)
T ss_pred -----------------------HHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhcccc
Confidence 12234444555577889999999999999999997631 11000
Q ss_pred -H-HHHH---------------------HH-HHHH-------HHhhcccccCCchh-------HHhHHHHh-----hc--
Q 002183 359 -E-KDTV---------------------EQ-VFQN-------AVDCLNEEDRNLPA-------IELMLPLL-----KR-- 393 (955)
Q Consensus 359 -e-~~~i---------------------~~-~~~~-------~~~~l~~~d~~~~~-------~~~~~~~l-----~~-- 393 (955)
+ ...+ +. .++. +...+.+.+..... -.....-. ..
T Consensus 525 k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~p 604 (1172)
T KOG0926|consen 525 KENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGP 604 (1172)
T ss_pred ccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCc
Confidence 0 0000 00 0000 11111110000000 00000000 11
Q ss_pred -CeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecce----eccCCCC------cccCHHHHHH
Q 002183 394 -GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK----KWDGDSH------RYIGSGEYIQ 462 (955)
Q Consensus 394 -gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~----~~d~~~~------~~~s~~ey~Q 462 (955)
-|-.+++-|+.+.+..|...-..|..-++|||++++..+.||++.+||.... .||.... .++|-++--|
T Consensus 605 LyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQ 684 (1172)
T KOG0926|consen 605 LYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQ 684 (1172)
T ss_pred eEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccch
Confidence 1566788899999999999889999999999999999999999999997653 5666532 4778888899
Q ss_pred HhccCCCCCCCCceEEEEEeCCcc
Q 002183 463 MSGRAGRRGKDDRGICIIMVDEQM 486 (955)
Q Consensus 463 ~~GRaGR~G~~~~g~~ii~~~~~~ 486 (955)
|+|||||.|. |+|+-+++...
T Consensus 685 RAGRAGRtgp---GHcYRLYSSAV 705 (1172)
T KOG0926|consen 685 RAGRAGRTGP---GHCYRLYSSAV 705 (1172)
T ss_pred hccccCCCCC---CceeehhhhHH
Confidence 9999999996 99999997763
No 116
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.79 E-value=1.3e-17 Score=207.45 Aligned_cols=65 Identities=23% Similarity=0.185 Sum_probs=57.8
Q ss_pred CCCCCCHHHHHHHH----HHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHH
Q 002183 73 YSFELDPFQRVSVA----CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYR 137 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~----~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~ 137 (955)
.||+++|.|.+.+. .+.+++++++.||||+|||++|++|++....++.+++|.+||++|..|+..
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHH
Confidence 68999999998766 457789999999999999999999987766677899999999999999865
No 117
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.79 E-value=1.3e-17 Score=198.62 Aligned_cols=123 Identities=20% Similarity=0.269 Sum_probs=101.8
Q ss_pred HHHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcC
Q 002183 317 IFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (955)
Q Consensus 317 ~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~g 394 (955)
+..++..+.. ..+.++||||+|++.++.++..|...++.
T Consensus 428 i~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~--------------------------------------- 468 (655)
T TIGR00631 428 VDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIK--------------------------------------- 468 (655)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccc---------------------------------------
Confidence 3345555543 24578999999999999999999876654
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCC-cccCHHHHHHHhccCCCCCCC
Q 002183 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH-RYIGSGEYIQMSGRAGRRGKD 473 (955)
Q Consensus 395 i~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~-~~~s~~ey~Q~~GRaGR~G~~ 473 (955)
+.++||++.+.+|..++..|++|.+.|||||+.+++|+|+|++++|+ .+|...+ .|.+...|+||+|||||..
T Consensus 469 ~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVv----i~DadifG~p~~~~~~iqriGRagR~~-- 542 (655)
T TIGR00631 469 VRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA----ILDADKEGFLRSERSLIQTIGRAARNV-- 542 (655)
T ss_pred eeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEE----EeCcccccCCCCHHHHHHHhcCCCCCC--
Confidence 57899999999999999999999999999999999999999999888 5553221 3778999999999999974
Q ss_pred CceEEEEEeCCc
Q 002183 474 DRGICIIMVDEQ 485 (955)
Q Consensus 474 ~~g~~ii~~~~~ 485 (955)
.|.++++.+..
T Consensus 543 -~G~vi~~~~~~ 553 (655)
T TIGR00631 543 -NGKVIMYADKI 553 (655)
T ss_pred -CCEEEEEEcCC
Confidence 47888887654
No 118
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.76 E-value=9.5e-17 Score=193.64 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHH----hc------CCcEEEEcCCCCchHHHHHHHHHHHH--hcCCeEEEEccChhhHHHHHHHHHHhcC
Q 002183 77 LDPFQRVSVACL----ER------NESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 77 l~~~Q~~ai~~l----~~------g~~vlv~apTGsGKTl~~~~~i~~~l--~~~~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
++++|..|+..+ .+ .+..++..+||||||+++...+...+ ....++|+++|+++|..|+.+.|.....
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 788999999775 22 35799999999999999877765554 3467999999999999999999999764
Q ss_pred CeeEEeccc------ccCCCCCEEEEeHHHHHHHHhcCCc--cCCcc-ceEEEEccccCCCCCChHHHHHHH-HhCCCcc
Q 002183 145 DVGLMTGDV------TLSPNASCLVMTTEILRGMLYRGSE--VLKEV-AWVIFDEIHYMKDRERGVVWEESI-IFLPPAI 214 (955)
Q Consensus 145 ~vg~~tGd~------~~~~~~~IlV~Tpe~L~~~l~~~~~--~l~~l-~~vIiDEaH~l~d~~rg~~~~~ii-~~l~~~~ 214 (955)
......+.. -.+....|+|+|.+++.+.+..... ....- -+||+||||+... | .|...+ ..+| +.
T Consensus 319 ~~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~---~-~~~~~l~~~~p-~a 393 (667)
T TIGR00348 319 DCAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY---G-ELAKNLKKALK-NA 393 (667)
T ss_pred CCCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc---h-HHHHHHHhhCC-CC
Confidence 211111111 0123578999999999764332111 11111 2899999998753 2 344444 3555 57
Q ss_pred eEEEeccccCC
Q 002183 215 KMVFLSATMSN 225 (955)
Q Consensus 215 ~~v~lSAT~~n 225 (955)
.+++|||||-.
T Consensus 394 ~~lGfTaTP~~ 404 (667)
T TIGR00348 394 SFFGFTGTPIF 404 (667)
T ss_pred cEEEEeCCCcc
Confidence 89999999953
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.75 E-value=3.2e-17 Score=188.62 Aligned_cols=338 Identities=14% Similarity=0.102 Sum_probs=191.3
Q ss_pred CCCHHHHHHHHHH----hcC-CcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccChhhHHHHHHHHHHhcCC--e
Q 002183 76 ELDPFQRVSVACL----ERN-ESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFKD--V 146 (955)
Q Consensus 76 ~l~~~Q~~ai~~l----~~g-~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~PtkaLa~Q~~~~l~~~~~~--v 146 (955)
.++.+|..||..+ .+| ..+|+++.||+|||.+|.--|...++. -+|||+++-+++|.+|.+..|..+.+. .
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~ 244 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTK 244 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCccc
Confidence 4899999999775 444 459999999999999986666555554 479999999999999999999999882 3
Q ss_pred eEEecccccCCCCCEEEEeHHHHHHHHhcC-----CccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEecc
Q 002183 147 GLMTGDVTLSPNASCLVMTTEILRGMLYRG-----SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSA 221 (955)
Q Consensus 147 g~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~-----~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSA 221 (955)
-....+......+.|.|+|...+...+... ......+++||+||||+=. -..|..++..+.. -++++||
T Consensus 245 ~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~I~dYFdA--~~~gLTA 318 (875)
T COG4096 245 MNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSSILDYFDA--ATQGLTA 318 (875)
T ss_pred eeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHHHHHHHHH--HHHhhcc
Confidence 333334444446899999999998766543 1224568999999999654 3346677776643 3455699
Q ss_pred ccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCC
Q 002183 222 TMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKA 301 (955)
Q Consensus 222 T~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 301 (955)
|+.+..+...+ +.+.+.|++..+... .--..++.+...-.+-.-.+.. .+......+.. .+........ ....
T Consensus 319 TP~~~~d~~T~-~~F~g~Pt~~Yslee--AV~DGfLvpy~vi~i~~~~~~~-G~~~~~~sere-k~~g~~i~~d--d~~~ 391 (875)
T COG4096 319 TPKETIDRSTY-GFFNGEPTYAYSLEE--AVEDGFLVPYKVIRIDTDFDLD-GWKPDAGSERE-KLQGEAIDED--DQNF 391 (875)
T ss_pred Ccccccccccc-cccCCCcceeecHHH--HhhccccCCCCceEEeeecccc-CcCcCccchhh-hhhccccCcc--cccc
Confidence 99754332111 111133444332210 0000111111100011111111 01111100000 0000000000 0000
Q ss_pred CCCc--cCCCCCCCCCcHHHHHHHHHHc---C--CCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhc
Q 002183 302 SGRM--AKGGSGSGGSDIFKIVKMIMER---K--FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCL 374 (955)
Q Consensus 302 ~~~~--~~~~~~~~~~~~~~l~~~l~~~---~--~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 374 (955)
..+. +.-........+...+...... + .+++||||.+..+|+.++..+......-
T Consensus 392 ~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~------------------ 453 (875)
T COG4096 392 EARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY------------------ 453 (875)
T ss_pred cccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc------------------
Confidence 0000 0000011222333333333333 2 5789999999999999999997632110
Q ss_pred ccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHh--cCCccEEEEcccccccCCCCCcEEEEecceeccCCCC
Q 002183 375 NEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQ--EGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH 452 (955)
Q Consensus 375 ~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~--~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~ 452 (955)
+ .+=+..+.|.-...++ . +..|. +..-+|.++.+++..|||+|.+..++ .+-.
T Consensus 454 ---~-------------~~~a~~IT~d~~~~q~-~-Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV----F~r~--- 508 (875)
T COG4096 454 ---N-------------GRYAMKITGDAEQAQA-L-IDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV----FDRK--- 508 (875)
T ss_pred ---c-------------CceEEEEeccchhhHH-H-HHHHHhcCCCCceEEehhhhhcCCCchheeeee----ehhh---
Confidence 0 0113455555433332 2 33343 45678999999999999999988665 1111
Q ss_pred cccCHHHHHHHhccCCCC
Q 002183 453 RYIGSGEYIQMSGRAGRR 470 (955)
Q Consensus 453 ~~~s~~ey~Q~~GRaGR~ 470 (955)
-.|...|.||+||+-|.
T Consensus 509 -VrSktkF~QMvGRGTRl 525 (875)
T COG4096 509 -VRSKTKFKQMVGRGTRL 525 (875)
T ss_pred -hhhHHHHHHHhcCcccc
Confidence 45788999999999996
No 120
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.75 E-value=2.2e-16 Score=184.17 Aligned_cols=271 Identities=22% Similarity=0.254 Sum_probs=179.4
Q ss_pred chhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCC
Q 002183 66 NGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (955)
Q Consensus 66 ~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~ 145 (955)
..-+.+..||+|+..|+-....+..|+++-+.||||.|||.-..+..+.....|++++|++||..|+.|.++.+..+..+
T Consensus 72 ~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 72 EEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 34566777999999999999999999999999999999998665555545566899999999999999999999998754
Q ss_pred ee-----E-Eecccc-----------cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHH
Q 002183 146 VG-----L-MTGDVT-----------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208 (955)
Q Consensus 146 vg-----~-~tGd~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~ 208 (955)
.| + .+|..+ .+.+.+|+|+|..=|..-...-.. -++++|++|.+|-++-.++. ...++.
T Consensus 152 ~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~--~kFdfifVDDVDA~LkaskN--vDriL~ 227 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK--LKFDFIFVDDVDAILKASKN--VDRLLR 227 (1187)
T ss_pred cCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc--cCCCEEEEccHHHHHhcccc--HHHHHH
Confidence 33 1 334322 134789999998866533322111 26899999999977644322 111111
Q ss_pred hC--------------------------------------------CCcceEEEeccccCChH----HHHHHHhhhcCCC
Q 002183 209 FL--------------------------------------------PPAIKMVFLSATMSNAT----QFAEWICHLHKQP 240 (955)
Q Consensus 209 ~l--------------------------------------------~~~~~~v~lSAT~~n~~----~~~~~l~~~~~~~ 240 (955)
++ .+.-++|..|||..... -|.+.++.--+.
T Consensus 228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~- 306 (1187)
T COG1110 228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGS- 306 (1187)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCc-
Confidence 11 13356788888874322 222222211000
Q ss_pred eEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHH
Q 002183 241 CHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKI 320 (955)
Q Consensus 241 ~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (955)
...-+...+ ..|.. ......+
T Consensus 307 --------~~~~LRNIv------D~y~~---------------------------------------------~~~~e~~ 327 (1187)
T COG1110 307 --------GGEGLRNIV------DIYVE---------------------------------------------SESLEKV 327 (1187)
T ss_pred --------cchhhhhee------eeecc---------------------------------------------CccHHHH
Confidence 000000000 00000 1233344
Q ss_pred HHHHHHcCCCcEEEEEcC---hHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEe
Q 002183 321 VKMIMERKFQPVIVFSFS---RRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAV 397 (955)
Q Consensus 321 ~~~l~~~~~~~~IVF~~s---~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~ 397 (955)
++.+...+ .-.|||++. +..++.++..|.+.|++ +..
T Consensus 328 ~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~---------------------------------------a~~ 367 (1187)
T COG1110 328 VELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGIN---------------------------------------AEL 367 (1187)
T ss_pred HHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCce---------------------------------------EEE
Confidence 44444444 468999999 89999999999998887 456
Q ss_pred ecCCCCHHHHHHHHHHHhcCCccEEEEcc----cccccCCCCCcE--EEEecce
Q 002183 398 HHSGLLPVIKELVELLFQEGLVKALFATE----TFAMGLNMPAKT--VVFTAVK 445 (955)
Q Consensus 398 ~H~~l~~~~R~~v~~~F~~g~i~VLvaT~----~la~Gidip~~~--vVi~~~~ 445 (955)
+|++ ++..++.|.+|++++||+.. ++.+|||+|.+- +||.+.+
T Consensus 368 ~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 368 IHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred eecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 6764 36778899999999999864 689999999854 5664444
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.75 E-value=9.3e-16 Score=184.38 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=99.7
Q ss_pred HHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCe
Q 002183 318 FKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395 (955)
Q Consensus 318 ~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi 395 (955)
..++..+.. ..+.++||||++++.++.++..|...++. +
T Consensus 433 ~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~---------------------------------------~ 473 (652)
T PRK05298 433 DDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIK---------------------------------------V 473 (652)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhccee---------------------------------------E
Confidence 344444433 24578999999999999999999876654 6
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCC-cccCHHHHHHHhccCCCCCCCC
Q 002183 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH-RYIGSGEYIQMSGRAGRRGKDD 474 (955)
Q Consensus 396 ~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~-~~~s~~ey~Q~~GRaGR~G~~~ 474 (955)
.++||++++.+|..++..|++|.+.|||||+.+++|+|+|++++|| .+|...+ .|.+...|+||+||+||. .
T Consensus 474 ~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVi----i~d~eifG~~~~~~~yiqr~GR~gR~-~-- 546 (652)
T PRK05298 474 RYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVA----ILDADKEGFLRSERSLIQTIGRAARN-V-- 546 (652)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEE----EeCCcccccCCCHHHHHHHhccccCC-C--
Confidence 7899999999999999999999999999999999999999999888 4443211 256889999999999996 3
Q ss_pred ceEEEEEeCC
Q 002183 475 RGICIIMVDE 484 (955)
Q Consensus 475 ~g~~ii~~~~ 484 (955)
.|.++++++.
T Consensus 547 ~G~~i~~~~~ 556 (652)
T PRK05298 547 NGKVILYADK 556 (652)
T ss_pred CCEEEEEecC
Confidence 5888888864
No 122
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=1.3e-17 Score=179.38 Aligned_cols=301 Identities=17% Similarity=0.121 Sum_probs=201.7
Q ss_pred CCHHHHHHHHHHhcC---CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----CeeEE
Q 002183 77 LDPFQRVSVACLERN---ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DVGLM 149 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g---~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~vg~~ 149 (955)
++|+|..++..+..+ ++.+++.|.|+|||++..-|+... .+++|+++..-.-+.||...|+.+.. .++.+
T Consensus 303 iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti---kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rF 379 (776)
T KOG1123|consen 303 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI---KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRF 379 (776)
T ss_pred cCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee---cccEEEEecCccCHHHHHHHHHhhcccCccceEEe
Confidence 899999999987433 688999999999999987765544 67899999999999999999988754 67889
Q ss_pred eccccc--CCCCCEEEEeHHHHHHHHhcCC--------ccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEe
Q 002183 150 TGDVTL--SPNASCLVMTTEILRGMLYRGS--------EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFL 219 (955)
Q Consensus 150 tGd~~~--~~~~~IlV~Tpe~L~~~l~~~~--------~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~l 219 (955)
|.|..- ..++.|+|+|+.++..--.+.. ..-++|+++|+||+|.+...-|..++.-+-.++ .++|
T Consensus 380 Tsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc-----KLGL 454 (776)
T KOG1123|consen 380 TSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC-----KLGL 454 (776)
T ss_pred eccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHh-----hccc
Confidence 988764 3478999999987643222211 123579999999999998655555554444444 4799
Q ss_pred ccccCChHH--------------HHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHH
Q 002183 220 SATMSNATQ--------------FAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQD 285 (955)
Q Consensus 220 SAT~~n~~~--------------~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (955)
|||+-..++ =++|+....+..+--+.+.. ++ + ....+-|..-+.
T Consensus 455 TATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaE--------VW----------C----pMt~eFy~eYL~ 512 (776)
T KOG1123|consen 455 TATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAE--------VW----------C----PMTPEFYREYLR 512 (776)
T ss_pred eeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeee--------ee----------c----CCCHHHHHHHHh
Confidence 999742211 24566544332222111100 00 0 011111111111
Q ss_pred HHHHhhccCCccCCCCCCCccCCCC-CCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHH
Q 002183 286 TFLKQKIGGRRENGKASGRMAKGGS-GSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVE 364 (955)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~ 364 (955)
.-..+.. .-..+ +.....+.-|++.... .+.++|||..+.-....+|-.|.+
T Consensus 513 ~~t~kr~-------------lLyvMNP~KFraCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K------------- 565 (776)
T KOG1123|consen 513 ENTRKRM-------------LLYVMNPNKFRACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK------------- 565 (776)
T ss_pred hhhhhhh-------------eeeecCcchhHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC-------------
Confidence 0000000 00000 1112334455555544 568999999998888888887765
Q ss_pred HHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHh-cCCccEEEEcccccccCCCCCcEEEEec
Q 002183 365 QVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQ-EGLVKALFATETFAMGLNMPAKTVVFTA 443 (955)
Q Consensus 365 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~-~g~i~VLvaT~~la~Gidip~~~vVi~~ 443 (955)
.+++|..++.+|..|++.|+ +..+..+|-..+....||+|..+|+|.-
T Consensus 566 -------------------------------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQI 614 (776)
T KOG1123|consen 566 -------------------------------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQI 614 (776)
T ss_pred -------------------------------ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEE
Confidence 47899999999999999999 5689999999999999999999999954
Q ss_pred ceeccCCCCcccCHHHHHHHhccCCCCCC
Q 002183 444 VKKWDGDSHRYIGSGEYIQMSGRAGRRGK 472 (955)
Q Consensus 444 ~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~ 472 (955)
..++. |...-.||.||.-|+.+
T Consensus 615 SSH~G-------SRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 615 SSHGG-------SRRQEAQRLGRILRAKK 636 (776)
T ss_pred ccccc-------chHHHHHHHHHHHHHhh
Confidence 44433 34567899999888743
No 123
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.73 E-value=5.1e-16 Score=169.62 Aligned_cols=122 Identities=20% Similarity=0.279 Sum_probs=100.4
Q ss_pred HHHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcC
Q 002183 317 IFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (955)
Q Consensus 317 ~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~g 394 (955)
+..++..+.. ..+.+++|-+-|++.++.+..+|...|..
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gik--------------------------------------- 472 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIK--------------------------------------- 472 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCce---------------------------------------
Confidence 3445544443 23478999999999999999999987765
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCC-CcccCHHHHHHHhccCCCCCCC
Q 002183 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS-HRYIGSGEYIQMSGRAGRRGKD 473 (955)
Q Consensus 395 i~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~-~~~~s~~ey~Q~~GRaGR~G~~ 473 (955)
+.++|+++...+|..++...+.|.+.|||.-+.+-.|+|+|.++.|. -.|... .-..|-.+.+|-+|||+|.-.
T Consensus 473 v~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVA----IlDADKeGFLRse~SLIQtIGRAARN~~- 547 (663)
T COG0556 473 VRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA----ILDADKEGFLRSERSLIQTIGRAARNVN- 547 (663)
T ss_pred EEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEE----EeecCccccccccchHHHHHHHHhhccC-
Confidence 78999999999999999999999999999999999999999999876 333321 124477889999999999774
Q ss_pred CceEEEEEeCC
Q 002183 474 DRGICIIMVDE 484 (955)
Q Consensus 474 ~~g~~ii~~~~ 484 (955)
|.||+..+.
T Consensus 548 --GkvIlYAD~ 556 (663)
T COG0556 548 --GKVILYADK 556 (663)
T ss_pred --CeEEEEchh
Confidence 899988754
No 124
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.73 E-value=1.1e-16 Score=164.71 Aligned_cols=155 Identities=30% Similarity=0.370 Sum_probs=130.2
Q ss_pred CCCCCHHHHHHHHHHhcC-CcEEEEcCCCCchHHHHHHHHHHHHhcC--CeEEEEccChhhHHHHHHHHHHhcCC-----
Q 002183 74 SFELDPFQRVSVACLERN-ESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSNQKYRELHQEFKD----- 145 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g-~~vlv~apTGsGKTl~~~~~i~~~l~~~--~~vl~l~PtkaLa~Q~~~~l~~~~~~----- 145 (955)
+++++++|.+++..+..+ +++++.+|||+|||.++..++...+..+ .+++|++|+++++.|+...+...+..
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKV 85 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEE
Confidence 456999999999999888 9999999999999999999998888765 88999999999999999999988853
Q ss_pred eeEEecccc------cCCCC-CEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEE
Q 002183 146 VGLMTGDVT------LSPNA-SCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVF 218 (955)
Q Consensus 146 vg~~tGd~~------~~~~~-~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~ 218 (955)
...+.+... ..... +++++|++.+.+.+.........++++|+||+|.+....+...+..++..+++..++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~ 165 (201)
T smart00487 86 VGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLL 165 (201)
T ss_pred EEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEE
Confidence 333444332 23334 99999999999988776656778999999999999976678888888888888899999
Q ss_pred eccccCChHH
Q 002183 219 LSATMSNATQ 228 (955)
Q Consensus 219 lSAT~~n~~~ 228 (955)
+|||+++..+
T Consensus 166 ~saT~~~~~~ 175 (201)
T smart00487 166 LSATPPEEIE 175 (201)
T ss_pred EecCCchhHH
Confidence 9999985543
No 125
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=6.3e-17 Score=176.05 Aligned_cols=326 Identities=12% Similarity=0.042 Sum_probs=224.5
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHH--hcCCeEEEEccChhhHHHHHHHHHHhcC--------Ce
Q 002183 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFK--------DV 146 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l--~~~~~vl~l~PtkaLa~Q~~~~l~~~~~--------~v 146 (955)
...+|.+++..+.+|+++++.-.|.+||++++..+....+ .+....+|.+|+++++....+-+.-... -|
T Consensus 287 ~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V 366 (1034)
T KOG4150|consen 287 GIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYV 366 (1034)
T ss_pred hhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhccee
Confidence 7899999999999999999999999999999998876554 4466789999999999876554432211 12
Q ss_pred eEEeccccc------CCCCCEEEEeHHHHHHHHhcC----CccCCccceEEEEccccCCCCCChHHHHHHHHhC------
Q 002183 147 GLMTGDVTL------SPNASCLVMTTEILRGMLYRG----SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL------ 210 (955)
Q Consensus 147 g~~tGd~~~------~~~~~IlV~Tpe~L~~~l~~~----~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l------ 210 (955)
....|+... ..+++++++.|.........+ ..++-+..+++.||+|...-. +|......+..|
T Consensus 367 ~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~ 445 (1034)
T KOG4150|consen 367 EMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQDQLRALSDLIKG 445 (1034)
T ss_pred ecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHHHHHHHHHHHHH
Confidence 223344332 236789999998776544322 233456789999999977643 344433333222
Q ss_pred ---CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHH
Q 002183 211 ---PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTF 287 (955)
Q Consensus 211 ---~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (955)
..+.|++-.|||..+......-+..+ ..+..+..+..|+.-.+++...+. + .+...-...++
T Consensus 446 F~~~~~~~~~~~~~~~K~~~~~~~~~~~~--~E~~Li~~DGSPs~~K~~V~WNP~--~----~P~~~~~~~~~------- 510 (1034)
T KOG4150|consen 446 FEASINMGVYDGDTPYKDRTRLRSELANL--SELELVTIDGSPSSEKLFVLWNPS--A----PPTSKSEKSSK------- 510 (1034)
T ss_pred HHhhcCcceEeCCCCcCCHHHHHHHhcCC--cceEEEEecCCCCccceEEEeCCC--C----CCcchhhhhhH-------
Confidence 35789999999998876655544433 356777788888877776653221 0 00000000000
Q ss_pred HHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 002183 288 LKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF 367 (955)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~ 367 (955)
......++..+.. ++.++|.||.+|+-|+-+....+..-..+..
T Consensus 511 --------------------------i~E~s~~~~~~i~-~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~--------- 554 (1034)
T KOG4150|consen 511 --------------------------VVEVSHLFAEMVQ-HGLRCIAFCPSRKLCELVLCLTREILAETAP--------- 554 (1034)
T ss_pred --------------------------HHHHHHHHHHHHH-cCCcEEEeccHHHHHHHHHHHHHHHHHHhhH---------
Confidence 0111233333333 4478999999999999887766542211111
Q ss_pred HHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceec
Q 002183 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447 (955)
Q Consensus 368 ~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~ 447 (955)
-|...|..+.||...++|..++..+-.|++.-++||++++.|||+...+.|+ ..
T Consensus 555 ----------------------~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl----~~ 608 (1034)
T KOG4150|consen 555 ----------------------HLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVL----HL 608 (1034)
T ss_pred ----------------------HHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEE----Ec
Confidence 1222366789999999999999999999999999999999999999999999 44
Q ss_pred cCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCC
Q 002183 448 DGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 448 d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~ 484 (955)
.. |.|.+.++|.+|||||+.++.-.+.+....+
T Consensus 609 GF----P~S~aNl~QQ~GRAGRRNk~SLavyva~~~P 641 (1034)
T KOG4150|consen 609 GF----PGSIANLWQQAGRAGRRNKPSLAVYVAFLGP 641 (1034)
T ss_pred cC----chhHHHHHHHhccccccCCCceEEEEEeccc
Confidence 44 8899999999999999999766555555433
No 126
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.71 E-value=1.6e-15 Score=171.54 Aligned_cols=363 Identities=16% Similarity=0.151 Sum_probs=224.5
Q ss_pred CCCCCHHHHHHHHHH----hcCCcEEEEcCCCCchHHH--HHHHHHHHHhc-CCeEEEEccChhhHHHHHHHHHHhcC--
Q 002183 74 SFELDPFQRVSVACL----ERNESVLVSAHTSAGKTAV--AEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQEFK-- 144 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~--~~~~i~~~l~~-~~~vl~l~PtkaLa~Q~~~~l~~~~~-- 144 (955)
+.+++++|.+.+..+ .+|-+.|++...|-|||+. ++++.+..... .+.-+|++|.-.|.| |.++|+.+.+
T Consensus 165 ~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~rf~P~l 243 (971)
T KOG0385|consen 165 GGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDN-WMNEFKRFTPSL 243 (971)
T ss_pred CCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHH-HHHHHHHhCCCc
Confidence 457999999999886 7788999999999999985 33444444333 567999999888776 6799999999
Q ss_pred CeeEEecccc----------cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcc
Q 002183 145 DVGLMTGDVT----------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 214 (955)
Q Consensus 145 ~vg~~tGd~~----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~ 214 (955)
++-++.||.. .....+|+|+|+|+...-- ....--.|+++||||||++-+. ...+.+++..+.. .
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~~-~ 318 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREFKT-D 318 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcch--hhHHHHHHHHhcc-c
Confidence 5667888763 1237899999999886421 1111226789999999999876 4556667766653 3
Q ss_pred eEEEecccc--------------------CChHHHHHHHhhhcC-CCeEEEe---cCCCc--------------ccceEE
Q 002183 215 KMVFLSATM--------------------SNATQFAEWICHLHK-QPCHVVY---TDFRP--------------TPLQHY 256 (955)
Q Consensus 215 ~~v~lSAT~--------------------~n~~~~~~~l~~~~~-~~~~v~~---~~~rp--------------~pl~~~ 256 (955)
..+++|.|+ ++.++|..|+..... ..-.++. .-.+| .|....
T Consensus 319 nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~ 398 (971)
T KOG0385|consen 319 NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKEL 398 (971)
T ss_pred ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCccee
Confidence 467888885 244677777764210 0000000 00000 111111
Q ss_pred EeecCCC-------------ceEEeecccchhchhhHHHHHHHHHHhhccCCc--cCCCCCCCccCCC-----CCCCCCc
Q 002183 257 VFPVGGS-------------GLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRR--ENGKASGRMAKGG-----SGSGGSD 316 (955)
Q Consensus 257 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~~~ 316 (955)
....+.. .+..+ ...+......+..++.++.+ -...|- .+.- .+.....+ .......
T Consensus 399 ~iyvgms~mQkk~Y~~iL~kdl~~~-n~~~~~~k~kL~NI~mQLRK-ccnHPYLF~g~e-Pg~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 399 IIYVGMSSMQKKWYKAILMKDLDAL-NGEGKGEKTKLQNIMMQLRK-CCNHPYLFDGAE-PGPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred eEeccchHHHHHHHHHHHHhcchhh-cccccchhhHHHHHHHHHHH-hcCCccccCCCC-CCCCCCcchHHHhcCcceeh
Confidence 1111100 00000 00000000111111112211 001110 0000 00000000 0112233
Q ss_pred HHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeE
Q 002183 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIA 396 (955)
Q Consensus 317 ~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~ 396 (955)
+..++..+.+. +.+|+||..-.+..+-+-.++.-.++. ..
T Consensus 476 LDkLL~~Lk~~-GhRVLIFSQmt~mLDILeDyc~~R~y~---------------------------------------yc 515 (971)
T KOG0385|consen 476 LDKLLPKLKEQ-GHRVLIFSQMTRMLDILEDYCMLRGYE---------------------------------------YC 515 (971)
T ss_pred HHHHHHHHHhC-CCeEEEeHHHHHHHHHHHHHHHhcCce---------------------------------------eE
Confidence 44555555544 589999998887777776666443433 45
Q ss_pred eecCCCCHHHHHHHHHHHhcC---CccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCC
Q 002183 397 VHHSGLLPVIKELVELLFQEG---LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD 473 (955)
Q Consensus 397 ~~H~~l~~~~R~~v~~~F~~g---~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~ 473 (955)
-+.|.++.++|...++.|... ..-.|++|-+.+.|||+-+.++|| -||. .++|..=.|..-||.|.|+.
T Consensus 516 RiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVI----lyDS----DWNPQ~DLQAmDRaHRIGQ~ 587 (971)
T KOG0385|consen 516 RLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVI----LYDS----DWNPQVDLQAMDRAHRIGQK 587 (971)
T ss_pred eecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEE----EecC----CCCchhhhHHHHHHHhhCCc
Confidence 678999999999999999853 344688999999999999999999 7777 78888899999999999999
Q ss_pred CceEEEEEeCCc-ccHHHHHH
Q 002183 474 DRGICIIMVDEQ-MEMNTLKD 493 (955)
Q Consensus 474 ~~g~~ii~~~~~-~~~~~~~~ 493 (955)
....||-++++. .+...+++
T Consensus 588 K~V~V~RLitentVEe~IveR 608 (971)
T KOG0385|consen 588 KPVVVYRLITENTVEEKIVER 608 (971)
T ss_pred CceEEEEEeccchHHHHHHHH
Confidence 999999999776 34444443
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.67 E-value=1.7e-14 Score=176.98 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=56.0
Q ss_pred CCCCCCHHHHHHHHH----HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHH-HHHH
Q 002183 73 YSFELDPFQRVSVAC----LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKY-RELH 140 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~----l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~-~~l~ 140 (955)
-+|++++-|.+.... +.+++.+++.|+||+|||++|++|++... .+.++||.+||++|++|.. +++.
T Consensus 242 ~~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-~~~~vvI~t~T~~Lq~Ql~~~~i~ 313 (820)
T PRK07246 242 LGLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-DQRQIIVSVPTKILQDQIMAEEVK 313 (820)
T ss_pred CCCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHH
Confidence 378999999995443 57788999999999999999999977643 5789999999999999994 4443
No 128
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=3.6e-15 Score=160.58 Aligned_cols=323 Identities=19% Similarity=0.240 Sum_probs=199.8
Q ss_pred CchhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHH-HHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhc
Q 002183 65 YNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAV-AEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~-~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
+...+.++.....+..+.+-+..+.+++.+++++.||||||.. -...+...+.....|.++.|.|--+.++..+..+..
T Consensus 36 Y~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEM 115 (699)
T KOG0925|consen 36 YYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEM 115 (699)
T ss_pred HHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHh
Confidence 4444555555556666777778889999999999999999973 233333344445779999999999999998888765
Q ss_pred C-CeeEEecccccCC-----CCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHH-------HHHHhC
Q 002183 144 K-DVGLMTGDVTLSP-----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE-------ESIIFL 210 (955)
Q Consensus 144 ~-~vg~~tGd~~~~~-----~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~-------~ii~~l 210 (955)
. .+|--.|..-..+ +.-.-.||.+.|..-.... ..+..++++|+|||| +|..... +++..
T Consensus 116 Dv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeah-----ERtlATDiLmGllk~v~~~- 188 (699)
T KOG0925|consen 116 DVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAH-----ERTLATDILMGLLKEVVRN- 188 (699)
T ss_pred ccccchhccccccccccCChhHHHHHhcchHHHHHHhhC-cccccccEEEechhh-----hhhHHHHHHHHHHHHHHhh-
Confidence 5 4444333322111 2223356666654433222 458899999999999 3333222 22222
Q ss_pred CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHh
Q 002183 211 PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQ 290 (955)
Q Consensus 211 ~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (955)
.++.++|.+|||. ++..|..+.+. ...+-.....|+ +.+..+ +.. .+.+
T Consensus 189 rpdLk~vvmSatl-~a~Kfq~yf~n----~Pll~vpg~~Pv--Ei~Yt~----------e~e----rDyl---------- 237 (699)
T KOG0925|consen 189 RPDLKLVVMSATL-DAEKFQRYFGN----APLLAVPGTHPV--EIFYTP----------EPE----RDYL---------- 237 (699)
T ss_pred CCCceEEEeeccc-chHHHHHHhCC----CCeeecCCCCce--EEEecC----------CCC----hhHH----------
Confidence 3589999999998 45556666652 222222223333 222111 000 0011
Q ss_pred hccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q 002183 291 KIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNA 370 (955)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~ 370 (955)
...+..++........+-++||..+..+.+..++.+....
T Consensus 238 -----------------------EaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~----------------- 277 (699)
T KOG0925|consen 238 -----------------------EAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREV----------------- 277 (699)
T ss_pred -----------------------HHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHH-----------------
Confidence 1122334444455567889999999999988888775311
Q ss_pred HhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHh---cC--CccEEEEcccccccCCCCCcEEEEecc-
Q 002183 371 VDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQ---EG--LVKALFATETFAMGLNMPAKTVVFTAV- 444 (955)
Q Consensus 371 ~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~---~g--~i~VLvaT~~la~Gidip~~~vVi~~~- 444 (955)
..|...- ..-.|..+| |.++..+.+-.. +| ..+|+|+|..+...+.++.+.+||...
T Consensus 278 -~~L~~~~------------g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf 340 (699)
T KOG0925|consen 278 -DNLGPQV------------GPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGF 340 (699)
T ss_pred -Hhhcccc------------CCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCch
Confidence 0111000 011244555 444444333222 12 468999999999999999999999654
Q ss_pred ---eeccCC------CCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 445 ---KKWDGD------SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 445 ---~~~d~~------~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
.-|+++ --+|+|..+-.||+|||||... |.||.++++.
T Consensus 341 ~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~p---GkcfrLYte~ 387 (699)
T KOG0925|consen 341 SKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP---GKCFRLYTEE 387 (699)
T ss_pred hhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCC---CceEEeecHH
Confidence 245554 2358888999999999999764 9999998765
No 129
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.64 E-value=9.1e-14 Score=173.85 Aligned_cols=123 Identities=22% Similarity=0.264 Sum_probs=91.9
Q ss_pred CCCCCHHHHHHHHH----HhcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHH----HHHHhcC
Q 002183 74 SFELDPFQRVSVAC----LERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYR----ELHQEFK 144 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~----l~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~----~l~~~~~ 144 (955)
+|+++|-|.+.+.. +.+++.+++-||||+|||++|++|.+... .++.+++|-++|++|.+|... .+++.++
T Consensus 255 ~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~~ 334 (928)
T PRK08074 255 KYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQKIFP 334 (928)
T ss_pred CCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHHHcC
Confidence 68999999996554 46788899999999999999999987644 468999999999999999865 2444443
Q ss_pred ---CeeEE----------------------------------------ecccc----------------------cC---
Q 002183 145 ---DVGLM----------------------------------------TGDVT----------------------LS--- 156 (955)
Q Consensus 145 ---~vg~~----------------------------------------tGd~~----------------------~~--- 156 (955)
++.++ |||.. ..
T Consensus 335 ~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~~c~~~~c 414 (928)
T PRK08074 335 FPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGESDGGKQS 414 (928)
T ss_pred CCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCcccCCCCC
Confidence 11111 23321 00
Q ss_pred ---------------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCC
Q 002183 157 ---------------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 157 ---------------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
..++|+|+...-|...+..+...+.+.+++||||||++.+
T Consensus 415 p~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 415 PWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred CcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHH
Confidence 1478999999888776644445678899999999999864
No 130
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.63 E-value=4.9e-15 Score=150.93 Aligned_cols=141 Identities=23% Similarity=0.230 Sum_probs=103.5
Q ss_pred CCCCHHHHHHHHHHh-------cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCee
Q 002183 75 FELDPFQRVSVACLE-------RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG 147 (955)
Q Consensus 75 f~l~~~Q~~ai~~l~-------~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg 147 (955)
|+|+++|.+|+..+. .+.++++.+|||||||.++...+..... +++|++|++.|.+|+..+|........
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---~~l~~~p~~~l~~Q~~~~~~~~~~~~~ 78 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---KVLIVAPNISLLEQWYDEFDDFGSEKY 78 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---EEEEEESSHHHHHHHHHHHHHHSTTSE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---ceeEecCHHHHHHHHHHHHHHhhhhhh
Confidence 578999999998875 2689999999999999999876666655 999999999999999999976665322
Q ss_pred EEecc---------c-------------ccCCCCCEEEEeHHHHHHHHhcCC-----------ccCCccceEEEEccccC
Q 002183 148 LMTGD---------V-------------TLSPNASCLVMTTEILRGMLYRGS-----------EVLKEVAWVIFDEIHYM 194 (955)
Q Consensus 148 ~~tGd---------~-------------~~~~~~~IlV~Tpe~L~~~l~~~~-----------~~l~~l~~vIiDEaH~l 194 (955)
...+. . ......++++.|...+........ ......++||+||||++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~ 158 (184)
T PF04851_consen 79 NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHY 158 (184)
T ss_dssp EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCT
T ss_pred hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhc
Confidence 21110 0 113467899999999987764321 23456789999999988
Q ss_pred CCCCChHH-HHHHHHhCCCcceEEEeccccC
Q 002183 195 KDRERGVV-WEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 195 ~d~~rg~~-~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
.. .. |..++. .+...+|+||||+.
T Consensus 159 ~~----~~~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 159 PS----DSSYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp HH----HHHHHHHHH--SSCCEEEEEESS-S
T ss_pred CC----HHHHHHHHc--CCCCeEEEEEeCcc
Confidence 73 33 666666 55677999999985
No 131
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=4.2e-14 Score=168.20 Aligned_cols=119 Identities=20% Similarity=0.144 Sum_probs=94.8
Q ss_pred CcHHHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhh
Q 002183 315 SDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLK 392 (955)
Q Consensus 315 ~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~ 392 (955)
..+..+++.+.. ..+.|+||||+|+..++.++..|...++.
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~------------------------------------- 624 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIA------------------------------------- 624 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCC-------------------------------------
Confidence 345566666643 36789999999999999999999887765
Q ss_pred cCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC---CcEE-----EEecceeccCCCCcccCHHHHHHHh
Q 002183 393 RGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP---AKTV-----VFTAVKKWDGDSHRYIGSGEYIQMS 464 (955)
Q Consensus 393 ~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip---~~~v-----Vi~~~~~~d~~~~~~~s~~ey~Q~~ 464 (955)
..++|+ .+..|+..+..|..+...|+|||++++||+||+ .+.. || . ..++-+...|.|+.
T Consensus 625 --h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VI----g----terhes~Rid~Ql~ 692 (1025)
T PRK12900 625 --HNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFIL----G----SERHESRRIDRQLR 692 (1025)
T ss_pred --ceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceee----C----CCCCchHHHHHHHh
Confidence 357786 588999999999999999999999999999999 4432 35 2 33477888999999
Q ss_pred ccCCCCCCCCceEEEEEe
Q 002183 465 GRAGRRGKDDRGICIIMV 482 (955)
Q Consensus 465 GRaGR~G~~~~g~~ii~~ 482 (955)
|||||.|..|.+..|+..
T Consensus 693 GRtGRqGdpGsS~ffvSl 710 (1025)
T PRK12900 693 GRAGRQGDPGESVFYVSL 710 (1025)
T ss_pred hhhhcCCCCcceEEEech
Confidence 999999996555444443
No 132
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=2e-13 Score=158.24 Aligned_cols=124 Identities=19% Similarity=0.130 Sum_probs=100.5
Q ss_pred hhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----C
Q 002183 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----D 145 (955)
Q Consensus 70 ~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~ 145 (955)
...+|..|++.|.-+.-.+.+|+ +..+.||.|||+++.+|++.....|..|-+++|+--||.|-+..+..+|. .
T Consensus 72 ~R~lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLs 149 (764)
T PRK12326 72 ERTLGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLT 149 (764)
T ss_pred HHHcCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCE
Confidence 34678889999999999998885 78999999999999999998888999999999999999999999988776 6
Q ss_pred eeEEecccccC-----CCCCEEEEeHHH-----HHHHHh-c-CCccCCccceEEEEccccCC
Q 002183 146 VGLMTGDVTLS-----PNASCLVMTTEI-----LRGMLY-R-GSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 146 vg~~tGd~~~~-----~~~~IlV~Tpe~-----L~~~l~-~-~~~~l~~l~~vIiDEaH~l~ 195 (955)
+|+++++.+.. -.++|+.+|..- |++.+. . .....+.+.++|+||||.++
T Consensus 150 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 150 VGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 77787776532 268999999854 343332 1 22335678899999999765
No 133
>COG4889 Predicted helicase [General function prediction only]
Probab=99.58 E-value=1.1e-14 Score=165.85 Aligned_cols=360 Identities=20% Similarity=0.204 Sum_probs=196.4
Q ss_pred CCchhhhhcCCCCCCHHHHHHHHHHhc----CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHH
Q 002183 64 VYNGEMAKTYSFELDPFQRVSVACLER----NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 64 ~~~~~~~~~~~f~l~~~Q~~ai~~l~~----g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l 139 (955)
....++...-+.+|+|+|++|+.+... +...=+.+.+|+|||..++ -|.+++.. .++|+++|..+|..|..++|
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala~-~~iL~LvPSIsLLsQTlrew 226 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALAA-ARILFLVPSISLLSQTLREW 226 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHhh-hheEeecchHHHHHHHHHHH
Confidence 345555566788899999999998633 3445567779999999874 45555554 78999999999999999999
Q ss_pred HHhcC---CeeEEecccccCC--------------------------------CCCEEEEeHHHHHHHHhcCCccCCccc
Q 002183 140 HQEFK---DVGLMTGDVTLSP--------------------------------NASCLVMTTEILRGMLYRGSEVLKEVA 184 (955)
Q Consensus 140 ~~~~~---~vg~~tGd~~~~~--------------------------------~~~IlV~Tpe~L~~~l~~~~~~l~~l~ 184 (955)
...-. ....+++|..... +--|+++|++.+-..-.....-+..++
T Consensus 227 ~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fD 306 (1518)
T COG4889 227 TAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFD 306 (1518)
T ss_pred hhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCcc
Confidence 87543 2222333332111 234788888877654443334578999
Q ss_pred eEEEEccccCCCCCChHHHHHHHHhCC-----CcceEEEeccccCChHHHHHHHhhhcC-CCeEEEecCCCcc--cceEE
Q 002183 185 WVIFDEIHYMKDRERGVVWEESIIFLP-----PAIKMVFLSATMSNATQFAEWICHLHK-QPCHVVYTDFRPT--PLQHY 256 (955)
Q Consensus 185 ~vIiDEaH~l~d~~rg~~~~~ii~~l~-----~~~~~v~lSAT~~n~~~~~~~l~~~~~-~~~~v~~~~~rp~--pl~~~ 256 (955)
+||.||||+-........-...+.... +..+.+.||||+.-.. +-...... ....+.+-+...+ |.-|-
T Consensus 307 liicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~---eS~K~kAkd~s~~l~SMDDe~~fGeef~r 383 (1518)
T COG4889 307 LIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYS---ESSKAKAKDHSAELSSMDDELTFGEEFHR 383 (1518)
T ss_pred EEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhc---hhhhhhhhhccceeeccchhhhhchhhhc
Confidence 999999998653211111111111111 2345788999974211 11111110 1111111111000 00000
Q ss_pred E-ee--------cCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHc
Q 002183 257 V-FP--------VGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER 327 (955)
Q Consensus 257 ~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 327 (955)
+ |. ...+-+.+.++.. .....+.... ..+. ++-.......+.-...-+.+.
T Consensus 384 l~FgeAv~rdlLTDYKVmvlaVd~~------~i~~~~~~~~----~~~~----------~~L~~dd~~kIvG~wnGlakr 443 (1518)
T COG4889 384 LGFGEAVERDLLTDYKVMVLAVDKE------VIAGVLQSVL----SGPS----------KGLALDDVSKIVGCWNGLAKR 443 (1518)
T ss_pred ccHHHHHHhhhhccceEEEEEechh------hhhhhhhhhc----cCcc----------cccchhhhhhhhhhhhhhhhh
Confidence 0 00 0000011111111 0111100000 0000 000000111111111122211
Q ss_pred ---------------CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhh
Q 002183 328 ---------------KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLK 392 (955)
Q Consensus 328 ---------------~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~ 392 (955)
...++|-||.+.+....++..+.. +.+.+...+.++-..+
T Consensus 444 ~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~--------------Vve~Y~~Elk~d~~nL----------- 498 (1518)
T COG4889 444 NGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFET--------------VVEAYDEELKKDFKNL----------- 498 (1518)
T ss_pred ccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHH--------------HHHHHHHHHHhcCCCc-----------
Confidence 123567778777777777766543 2333332333222222
Q ss_pred cCeEeec--CCCCHHHHHHHHHH---HhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccC
Q 002183 393 RGIAVHH--SGLLPVIKELVELL---FQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRA 467 (955)
Q Consensus 393 ~gi~~~H--~~l~~~~R~~v~~~---F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRa 467 (955)
.+.+-| |.|...+|+..+.+ |....++||--...+++|||+|+.+-|| .||+ -.+.-+.+|.+||.
T Consensus 499 -~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsVi----Ff~p----r~smVDIVQaVGRV 569 (1518)
T COG4889 499 -KISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVI----FFDP----RSSMVDIVQAVGRV 569 (1518)
T ss_pred -eEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEE----EecC----chhHHHHHHHHHHH
Confidence 144444 78999999666554 4567899999999999999999999988 7888 45778999999999
Q ss_pred CCCCC-CCceEEEEEe
Q 002183 468 GRRGK-DDRGICIIMV 482 (955)
Q Consensus 468 GR~G~-~~~g~~ii~~ 482 (955)
-|... ...|++|+-.
T Consensus 570 MRKa~gK~yGYIILPI 585 (1518)
T COG4889 570 MRKAKGKKYGYIILPI 585 (1518)
T ss_pred HHhCcCCccceEEEEe
Confidence 99633 3368887754
No 134
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.56 E-value=4.8e-14 Score=136.31 Aligned_cols=132 Identities=29% Similarity=0.362 Sum_probs=104.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHh--cCCeEEEEccChhhHHHHHHHHHHhcC---CeeEEeccccc-------CCCC
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEFK---DVGLMTGDVTL-------SPNA 159 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~--~~~~vl~l~PtkaLa~Q~~~~l~~~~~---~vg~~tGd~~~-------~~~~ 159 (955)
+++++.+|||+|||.++...+..... ...+++|++|+++|++|+...+...+. .+..+.+.... ..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCC
Confidence 46899999999999999888887765 467999999999999999999988873 55566654432 3578
Q ss_pred CEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEecccc
Q 002183 160 SCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATM 223 (955)
Q Consensus 160 ~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~ 223 (955)
+|+++|++.+...+.........++++|+||+|.+....................+++++|||+
T Consensus 81 ~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 81 DIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 9999999998877665555566889999999999987654443322344456788999999996
No 135
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.55 E-value=3.8e-16 Score=182.01 Aligned_cols=279 Identities=24% Similarity=0.363 Sum_probs=190.5
Q ss_pred CCCHHHHHHHHHH-hcCCcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccChhhHHHHHHHHHHhcC----CeeE
Q 002183 76 ELDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFK----DVGL 148 (955)
Q Consensus 76 ~l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~PtkaLa~Q~~~~l~~~~~----~vg~ 148 (955)
.+.|.|.+.+.++ ..+.++++-+|||+|||++|+.++...+.. +.+++|++|-++|...-..+|...+. ++.-
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 3667888877664 556789999999999999999999998864 68999999999999999999988765 3556
Q ss_pred EecccccC----CCCCEEEEeHHHHHHHHh--cCCccCCccceEEEEccccCCCCCChHHHHHHHHh-------CCCcce
Q 002183 149 MTGDVTLS----PNASCLVMTTEILRGMLY--RGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF-------LPPAIK 215 (955)
Q Consensus 149 ~tGd~~~~----~~~~IlV~Tpe~L~~~l~--~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~-------l~~~~~ 215 (955)
.+||+.-. .+++|+|+||+++..... .....+++++.+|+||.|.+++ +||++++.+... +++.++
T Consensus 1007 ~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~vr 1085 (1230)
T KOG0952|consen 1007 LTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEPVR 1085 (1230)
T ss_pred ccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCccccCcchh
Confidence 78877654 368999999999877665 4456789999999999998876 689988755432 456789
Q ss_pred EEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCC
Q 002183 216 MVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGR 295 (955)
Q Consensus 216 ~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 295 (955)
.+++|--+.|+.++++|++.... +-+....||+|++.++-.-++ .+ +...+.+.
T Consensus 1086 ~~glsta~~na~dla~wl~~~~~---~nf~~svrpvp~~~~i~gfp~--~~-------------~cprm~sm-------- 1139 (1230)
T KOG0952|consen 1086 YLGLSTALANANDLADWLNIKDM---YNFRPSVRPVPLEVHIDGFPG--QH-------------YCPRMMSM-------- 1139 (1230)
T ss_pred hhhHhhhhhccHHHHHHhCCCCc---CCCCcccccCCceEeecCCCc--hh-------------cchhhhhc--------
Confidence 99999999999999999986432 445567899999877642221 11 11111110
Q ss_pred ccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHH---HHHHHHHHh
Q 002183 296 RENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV---EQVFQNAVD 372 (955)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i---~~~~~~~~~ 372 (955)
... .........+..|++||+.+++....-|..|....-.....+..+ ..-++..+.
T Consensus 1140 ------------------nkp--a~qaik~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~de~e~e~~~~ 1199 (1230)
T KOG0952|consen 1140 ------------------NKP--AFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMDELELEIIMS 1199 (1230)
T ss_pred ------------------ccH--HHHHHhcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCCHHHHHHHHH
Confidence 000 111111223568999999998876655555532111111000000 111222222
Q ss_pred hcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHH
Q 002183 373 CLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKEL 409 (955)
Q Consensus 373 ~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~ 409 (955)
..++ ..+.-.+..||+.||+|+...+|..
T Consensus 1200 ~~~d--------~~Lk~tl~Fgi~lhhagl~~~dr~~ 1228 (1230)
T KOG0952|consen 1200 KVRD--------TNLKLTLPFGIGLHHAGLIENDRKI 1228 (1230)
T ss_pred Hhcc--------cchhhhhhhhhhhhhhhcccccccc
Confidence 2222 2355568899999999998887754
No 136
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.55 E-value=2.6e-13 Score=146.74 Aligned_cols=360 Identities=20% Similarity=0.220 Sum_probs=209.8
Q ss_pred CCHHHHHHHHH-HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC---CeeEEecc
Q 002183 77 LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK---DVGLMTGD 152 (955)
Q Consensus 77 l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~---~vg~~tGd 152 (955)
|-|||++.+.. +.+|..++++...|-|||+.| ++|+...+.....+|++|- .|--.|.+.+..+++ .+.++.+.
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~~~ 276 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDKS 276 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEecc
Confidence 78999999876 789999999999999999988 5666666667779999996 677788899999888 44555554
Q ss_pred cccC----CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccC--Ch
Q 002183 153 VTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS--NA 226 (955)
Q Consensus 153 ~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~--n~ 226 (955)
...- ....|.|++++.+..+-.. ..-..+++||+||.|++.+.. ......+.-.+....++|+||.|+. .+
T Consensus 277 ~D~~~~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvILLSGTPavSRP 353 (689)
T KOG1000|consen 277 SDPLPDVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVILLSGTPAVSRP 353 (689)
T ss_pred cCCccccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheEEecCCcccCCc
Confidence 3322 2357899999987643221 223458999999999998742 3334444445555677999999974 22
Q ss_pred HH---------------HHHHHhhhcC-CCeEEEecCCCcccce-----------------EEE--eecCCCceEEeecc
Q 002183 227 TQ---------------FAEWICHLHK-QPCHVVYTDFRPTPLQ-----------------HYV--FPVGGSGLYLVVDE 271 (955)
Q Consensus 227 ~~---------------~~~~l~~~~~-~~~~v~~~~~rp~pl~-----------------~~~--~~~~~~~~~~~~~~ 271 (955)
.+ |.+|-..+.. +.+........-+.+. +.+ .|...+.+.++...
T Consensus 354 ~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~g 433 (689)
T KOG1000|consen 354 SELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGG 433 (689)
T ss_pred hhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCC
Confidence 22 2222222211 1111111111000000 000 00011111112111
Q ss_pred cchhchhhHHHHHHHHHH-hhccCCc-cCCCCCCCccCCCCCCCCCcHHHHHHHHHH------cCCCcEEEEEcChHHHH
Q 002183 272 KEQFREDNFVKLQDTFLK-QKIGGRR-ENGKASGRMAKGGSGSGGSDIFKIVKMIME------RKFQPVIVFSFSRRECE 343 (955)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~IVF~~s~~~~~ 343 (955)
...-......+......+ ....... .+. .. -......++..+++.+.. .+..+.+|||....-.+
T Consensus 434 r~da~~~~lv~~a~~~t~~~~~e~~~~~l~-----l~--y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd 506 (689)
T KOG1000|consen 434 RIDARMDDLVKAAADYTKVNSMERKHESLL-----LF--YSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLD 506 (689)
T ss_pred ccchHHHHHHHHhhhcchhhhhhhhhHHHH-----HH--HHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHH
Confidence 111111111111000000 0000000 000 00 000012233444555444 35678999999988888
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhc-CCccE-
Q 002183 344 QHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQE-GLVKA- 421 (955)
Q Consensus 344 ~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~-g~i~V- 421 (955)
.+...+++.+.. .--+.|..++..|+...+.|+. ..++|
T Consensus 507 ~Iq~~~~~r~vg---------------------------------------~IRIDGst~s~~R~ll~qsFQ~seev~VA 547 (689)
T KOG1000|consen 507 TIQVEVNKRKVG---------------------------------------SIRIDGSTPSHRRTLLCQSFQTSEEVRVA 547 (689)
T ss_pred HHHHHHHHcCCC---------------------------------------eEEecCCCCchhHHHHHHHhccccceEEE
Confidence 887777653322 2345799999999999999994 45554
Q ss_pred EEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhH
Q 002183 422 LFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMV 495 (955)
Q Consensus 422 LvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~ 495 (955)
+++-.+.++|+++.+.++|+..-. +++|+-.+|.--||.|.|+.....++.++-...-.+.+-.++
T Consensus 548 vlsItA~gvGLt~tAa~~VVFaEL--------~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l 613 (689)
T KOG1000|consen 548 VLSITAAGVGLTLTAASVVVFAEL--------HWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPML 613 (689)
T ss_pred EEEEeecccceeeeccceEEEEEe--------cCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHH
Confidence 456677889999999888773322 667788999999999999977666666664443333333333
No 137
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.55 E-value=4.2e-13 Score=153.09 Aligned_cols=353 Identities=16% Similarity=0.140 Sum_probs=210.6
Q ss_pred CCHHHHHHHHHH----hcCCcEEEEcCCCCchHHH--HHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhcC--Cee
Q 002183 77 LDPFQRVSVACL----ERNESVLVSAHTSAGKTAV--AEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFK--DVG 147 (955)
Q Consensus 77 l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~--~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~~--~vg 147 (955)
|.+||++++..+ .++...|+....|-|||.. +.++.+..- +--+++||++|. .+..||.++|..+++ .|.
T Consensus 206 Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~rv~ 284 (923)
T KOG0387|consen 206 LFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFRVF 284 (923)
T ss_pred hhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceEEE
Confidence 789999999886 5667789999999999963 334433332 223789999996 799999999999999 455
Q ss_pred EEecccc--------------------cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHH
Q 002183 148 LMTGDVT--------------------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (955)
Q Consensus 148 ~~tGd~~--------------------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii 207 (955)
+++|..+ ......|+|+|++.++-+ .....-..|+++|+||.|++.++. .......
T Consensus 285 ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn--s~islac 360 (923)
T KOG0387|consen 285 ILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN--SKISLAC 360 (923)
T ss_pred EEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc--cHHHHHH
Confidence 6655433 123567999999987532 222223478999999999999873 3344444
Q ss_pred HhCCCcceEEEeccccC--ChHHHHHHHhhhc-----------CCCeEEE-e-cCCCcccceE------------EE---
Q 002183 208 IFLPPAIKMVFLSATMS--NATQFAEWICHLH-----------KQPCHVV-Y-TDFRPTPLQH------------YV--- 257 (955)
Q Consensus 208 ~~l~~~~~~v~lSAT~~--n~~~~~~~l~~~~-----------~~~~~v~-~-~~~rp~pl~~------------~~--- 257 (955)
..++ ..+.|.||.|+= |-.++...+..+. ..-.+.+ . .....+|++. .+
T Consensus 361 kki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~Py 439 (923)
T KOG0387|consen 361 KKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPY 439 (923)
T ss_pred Hhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 4444 456778888873 4456554443321 0000111 1 1111111100 00
Q ss_pred ------------eecCCCceEEeecccchhchhhHHHHH-----HHHHHh-------------hccCCccCCCCCCCccC
Q 002183 258 ------------FPVGGSGLYLVVDEKEQFREDNFVKLQ-----DTFLKQ-------------KIGGRRENGKASGRMAK 307 (955)
Q Consensus 258 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~-------------~~~~~~~~~~~~~~~~~ 307 (955)
.........+.+.-. .....-|...+ ..+... ....|.-..+. ....+
T Consensus 440 lLRR~K~dv~~~~Lp~K~E~VlfC~LT-~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~-~~~~~ 517 (923)
T KOG0387|consen 440 LLRRMKSDVKGLKLPKKEEIVLFCRLT-KLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRR-DEDEK 517 (923)
T ss_pred HHHHHHHHhhhccCCCccceEEEEecc-HHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCc-ccccc
Confidence 000001111111100 00001111111 111110 01111100000 00111
Q ss_pred CCCCC--------CCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHhhccccc
Q 002183 308 GGSGS--------GGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK-LDFNTQEEKDTVEQVFQNAVDCLNEED 378 (955)
Q Consensus 308 ~~~~~--------~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~-~~~~~~~e~~~i~~~~~~~~~~l~~~d 378 (955)
.+.+. ....+..++....+ .+.++++|..++...+-+-..|.. .++.
T Consensus 518 ~~~D~~g~~k~sGKm~vl~~ll~~W~k-qg~rvllFsqs~~mLdilE~fL~~~~~ys----------------------- 573 (923)
T KOG0387|consen 518 QGPDYEGDPKRSGKMKVLAKLLKDWKK-QGDRVLLFSQSRQMLDILESFLRRAKGYS----------------------- 573 (923)
T ss_pred cCCCcCCChhhcchHHHHHHHHHHHhh-CCCEEEEehhHHHHHHHHHHHHHhcCCce-----------------------
Confidence 11111 11222333333333 346999999999998888877763 2222
Q ss_pred CCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCcc--EEEEcccccccCCCCCcEEEEecceeccCCCCcccC
Q 002183 379 RNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVK--ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIG 456 (955)
Q Consensus 379 ~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~--VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s 456 (955)
..-..|..+...|....+.|.++... .|++|.+.+.|+|+-..+-|| -||+ .++
T Consensus 574 ----------------ylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVI----IfDP----dWN 629 (923)
T KOG0387|consen 574 ----------------YLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVI----IFDP----DWN 629 (923)
T ss_pred ----------------EEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEE----EECC----CCC
Confidence 34567888889999999999976433 577999999999999988777 6888 788
Q ss_pred HHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 457 SGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 457 ~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|+.=.|..-||-|.|+.....+|-+.+..
T Consensus 630 PStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 630 PSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred CccchHHHHHHHhhcCccceEEEEEecCC
Confidence 88899999999999998888888887655
No 138
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=1.2e-12 Score=155.69 Aligned_cols=123 Identities=15% Similarity=0.170 Sum_probs=98.0
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----Ce
Q 002183 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~v 146 (955)
...|..++++|.-+--.+..|+ |..+.||+|||+++.+|++.....|..|-+++|+--||.|-+..+..+|. .|
T Consensus 77 R~lGm~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v 154 (913)
T PRK13103 77 RVMGMRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSV 154 (913)
T ss_pred HHhCCCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEE
Confidence 3567778899987766666664 89999999999999999998888999999999999999999999998886 67
Q ss_pred eEEecccccCC-----CCCEEEEeHHHH-----HHHHh--cCCccCCccceEEEEccccCC
Q 002183 147 GLMTGDVTLSP-----NASCLVMTTEIL-----RGMLY--RGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 147 g~~tGd~~~~~-----~~~IlV~Tpe~L-----~~~l~--~~~~~l~~l~~vIiDEaH~l~ 195 (955)
|+++|+.+... .++|+++|..-+ ++.+. ......+.+.++|+||+|.++
T Consensus 155 ~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 155 GIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred EEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 77877764322 589999999775 33222 112234789999999999875
No 139
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.51 E-value=3.9e-14 Score=122.52 Aligned_cols=73 Identities=29% Similarity=0.449 Sum_probs=68.9
Q ss_pred hhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCC
Q 002183 391 LKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRR 470 (955)
Q Consensus 391 l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~ 470 (955)
....+..+||++++.+|+.+++.|++|..+|||||+++++|||+|.+++|| .|+. |.++.+|.|++||+||.
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi----~~~~----~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVI----FYDP----PWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEE----ESSS----ESSHHHHHHHHTTSSTT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccc----cccc----CCCHHHHHHHhhcCCCC
Confidence 345689999999999999999999999999999999999999999999999 7777 99999999999999998
Q ss_pred C
Q 002183 471 G 471 (955)
Q Consensus 471 G 471 (955)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 140
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.48 E-value=2.1e-13 Score=130.53 Aligned_cols=104 Identities=31% Similarity=0.421 Sum_probs=92.1
Q ss_pred CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHH
Q 002183 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (955)
Q Consensus 328 ~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R 407 (955)
...++||||+++..++.++..|...+ .++.++||++++.+|
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~---------------------------------------~~~~~~~~~~~~~~~ 67 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPG---------------------------------------IKVAALHGDGSQEER 67 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcC---------------------------------------CcEEEEECCCCHHHH
Confidence 36799999999999999999987522 247899999999999
Q ss_pred HHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEE
Q 002183 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICII 480 (955)
Q Consensus 408 ~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii 480 (955)
..+...|.+|..++|++|.++++|+|+|..++|| .++. +.+..+|.|++||+||.|. .|.+++
T Consensus 68 ~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi----~~~~----~~~~~~~~Q~~GR~~R~~~--~~~~~~ 130 (131)
T cd00079 68 EEVLKDFREGEIVVLVATDVIARGIDLPNVSVVI----NYDL----PWSPSSYLQRIGRAGRAGQ--KGTAIL 130 (131)
T ss_pred HHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEE----EeCC----CCCHHHheecccccccCCC--CceEEe
Confidence 9999999999999999999999999999999888 5666 8899999999999999997 466554
No 141
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.47 E-value=2.4e-11 Score=142.84 Aligned_cols=58 Identities=24% Similarity=0.284 Sum_probs=50.4
Q ss_pred HHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh--cCCeEEEEccChhhHHHHHHHHHHhc
Q 002183 86 ACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 86 ~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~--~~~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
.++.+++.+++.|+||+|||++|++|++..+. .+.++||++||++|+.|+++++..+-
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 44578889999999999999999999877654 47899999999999999999877554
No 142
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.46 E-value=2e-12 Score=153.63 Aligned_cols=354 Identities=16% Similarity=0.163 Sum_probs=218.9
Q ss_pred CCCCCHHHHHHHHHH----hcCCcEEEEcCCCCchHH---HHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-C
Q 002183 74 SFELDPFQRVSVACL----ERNESVLVSAHTSAGKTA---VAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-D 145 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl---~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~ 145 (955)
|-+|+.||.+.+..+ ..+.++|++...|-|||+ +|+..+.....-.+..|+++|.-.+.+ |.++|..+.. +
T Consensus 368 g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~-W~~ef~~w~~mn 446 (1373)
T KOG0384|consen 368 GNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA-WEREFETWTDMN 446 (1373)
T ss_pred cchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH-HHHHHHHHhhhc
Confidence 467999999999876 678999999999999997 455555555545567899999866655 6788887775 5
Q ss_pred eeEEeccccc-----------CC-----CCCEEEEeHHHHHHHHhcCCccCC--ccceEEEEccccCCCCCChHHHHHHH
Q 002183 146 VGLMTGDVTL-----------SP-----NASCLVMTTEILRGMLYRGSEVLK--EVAWVIFDEIHYMKDRERGVVWEESI 207 (955)
Q Consensus 146 vg~~tGd~~~-----------~~-----~~~IlV~Tpe~L~~~l~~~~~~l~--~l~~vIiDEaH~l~d~~rg~~~~~ii 207 (955)
+-++.|+..- .. ..+++++|+|.++.- ...|+ .+.++++||||++-+.. ...|+ .+
T Consensus 447 ~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD----k~~L~~i~w~~~~vDeahrLkN~~-~~l~~-~l 520 (1373)
T KOG0384|consen 447 VIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD----KAELSKIPWRYLLVDEAHRLKNDE-SKLYE-SL 520 (1373)
T ss_pred eeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc----HhhhccCCcceeeecHHhhcCchH-HHHHH-HH
Confidence 6666776531 12 578999999988532 12222 56789999999998652 23333 34
Q ss_pred HhCCCcceEEEeccccC--ChHHHHHHHhhhcCCCeEEEe---cCC---------------Ccccc-------eEEEeec
Q 002183 208 IFLPPAIKMVFLSATMS--NATQFAEWICHLHKQPCHVVY---TDF---------------RPTPL-------QHYVFPV 260 (955)
Q Consensus 208 ~~l~~~~~~v~lSAT~~--n~~~~~~~l~~~~~~~~~v~~---~~~---------------rp~pl-------~~~~~~~ 260 (955)
..+.- -..+++|.|+- |..++...+..++......-. .++ +|--| +.. .+.
T Consensus 521 ~~f~~-~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdveks-lp~ 598 (1373)
T KOG0384|consen 521 NQFKM-NHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKS-LPP 598 (1373)
T ss_pred HHhcc-cceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccC-CCC
Confidence 44332 33578888874 456766666433211110000 000 00000 000 000
Q ss_pred CCCceEEe--------------------ecccchhchhhHHHHHHHHHHhhccCCcc--------CCCCCCCc----cCC
Q 002183 261 GGSGLYLV--------------------VDEKEQFREDNFVKLQDTFLKQKIGGRRE--------NGKASGRM----AKG 308 (955)
Q Consensus 261 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~----~~~ 308 (955)
..+++.-+ ......-...++..++..+.+- ...|-- ......+. -++
T Consensus 599 k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKc-cNHpyLi~gaee~~~~~~~~~~~d~~L~~ 677 (1373)
T KOG0384|consen 599 KEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKC-CNHPYLIKGAEEKILGDFRDKMRDEALQA 677 (1373)
T ss_pred CcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHh-cCCccccCcHHHHHHHhhhhcchHHHHHH
Confidence 00011000 0000000112333333333221 011100 00000000 000
Q ss_pred -CC-CCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHh
Q 002183 309 -GS-GSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIEL 386 (955)
Q Consensus 309 -~~-~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~ 386 (955)
.. ....--+.+|+-.|.+ ++.+||||..-.+..+-++.+|...+++-
T Consensus 678 lI~sSGKlVLLDKLL~rLk~-~GHrVLIFSQMVRmLDIL~eYL~~r~ypf------------------------------ 726 (1373)
T KOG0384|consen 678 LIQSSGKLVLLDKLLPRLKE-GGHRVLIFSQMVRMLDILAEYLSLRGYPF------------------------------ 726 (1373)
T ss_pred HHHhcCcEEeHHHHHHHHhc-CCceEEEhHHHHHHHHHHHHHHHHcCCcc------------------------------
Confidence 00 0111223334444433 56899999999999999999998877762
Q ss_pred HHHHhhcCeEeecCCCCHHHHHHHHHHHhc---CCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHH
Q 002183 387 MLPLLKRGIAVHHSGLLPVIKELVELLFQE---GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQM 463 (955)
Q Consensus 387 ~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~---g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~ 463 (955)
.-+-|++..+.|...+..|.. ...-.|.||-+.+.|||+-+.+.|| -||. .++|..=.|.
T Consensus 727 ---------QRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVI----IFDS----DWNPQNDLQA 789 (1373)
T KOG0384|consen 727 ---------QRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVI----IFDS----DWNPQNDLQA 789 (1373)
T ss_pred ---------eeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEE----EeCC----CCCcchHHHH
Confidence 346899999999999999984 4667899999999999999988887 6777 7888999999
Q ss_pred hccCCCCCCCCceEEEEEeCCc
Q 002183 464 SGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 464 ~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
..||.|.|+.....+|-+++..
T Consensus 790 qARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 790 QARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred HHHHHhhcccceEEEEEEecCC
Confidence 9999999999999999998765
No 143
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.45 E-value=1.8e-11 Score=143.79 Aligned_cols=384 Identities=14% Similarity=0.139 Sum_probs=211.8
Q ss_pred CCCHHHHHHHHHH---h-------cCCcEEEEcCCCCchHHHHHHHHHHHHhc--C-----CeEEEEccChhhHHHHHHH
Q 002183 76 ELDPFQRVSVACL---E-------RNESVLVSAHTSAGKTAVAEYAIAMAFRD--K-----QRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 76 ~l~~~Q~~ai~~l---~-------~g~~vlv~apTGsGKTl~~~~~i~~~l~~--~-----~~vl~l~PtkaLa~Q~~~~ 138 (955)
.++|+|++++..+ . .....|++-..|+|||+....-+...++. + .+.||++| ..|.+-|+++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHHH
Confidence 4899999999876 1 22346778889999999765555444443 4 67899999 4899999999
Q ss_pred HHHhcCC--eeE--Eeccccc--------------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCCh
Q 002183 139 LHQEFKD--VGL--MTGDVTL--------------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG 200 (955)
Q Consensus 139 l~~~~~~--vg~--~tGd~~~--------------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg 200 (955)
|.++.+. +.. ++|...- +-...|++.++|.++..... .....++++|+||.|++.+. .
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~--~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS--D 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch--h
Confidence 9999873 322 3443331 11346788899988743332 33567899999999999875 2
Q ss_pred HHHHHHHHhCCCcceEEEeccccC--ChHHHHHHHhhhcCCCeEEEe----------cCCCccc--------------c-
Q 002183 201 VVWEESIIFLPPAIKMVFLSATMS--NATQFAEWICHLHKQPCHVVY----------TDFRPTP--------------L- 253 (955)
Q Consensus 201 ~~~~~ii~~l~~~~~~v~lSAT~~--n~~~~~~~l~~~~~~~~~v~~----------~~~rp~p--------------l- 253 (955)
..+-..+..+. ..+.|+||.|+= |-.|+-..+......-..... ...|..+ |
T Consensus 393 s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~ 471 (776)
T KOG0390|consen 393 SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELR 471 (776)
T ss_pred hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHH
Confidence 33334444443 345789999973 445555555432110000000 0000000 0
Q ss_pred ---eEEEeec---------CCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHH
Q 002183 254 ---QHYVFPV---------GGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIV 321 (955)
Q Consensus 254 ---~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 321 (955)
..++... ++..-+.++-.........+.+..... ... ..+ .....++
T Consensus 472 ~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~-------------~~~-------~~~l~~~ 530 (776)
T KOG0390|consen 472 ELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMR-------------TLK-------GYALELI 530 (776)
T ss_pred HHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhh-------------hhh-------cchhhHH
Confidence 0000000 001111111111111112222222111 000 000 0012233
Q ss_pred HHHHHcCCCcEEEE-EcChHH--HHHH-HHHhccCCCCCHHHHHHHHHHHHHHHhhc--------------ccccCCchh
Q 002183 322 KMIMERKFQPVIVF-SFSRRE--CEQH-AMSMSKLDFNTQEEKDTVEQVFQNAVDCL--------------NEEDRNLPA 383 (955)
Q Consensus 322 ~~l~~~~~~~~IVF-~~s~~~--~~~l-a~~L~~~~~~~~~e~~~i~~~~~~~~~~l--------------~~~d~~~~~ 383 (955)
-.+...-..|.++. ++-... +... +..+....+........-..++...+..+ +.-...+..
T Consensus 531 ~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl 610 (776)
T KOG0390|consen 531 TKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDL 610 (776)
T ss_pred HHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHH
Confidence 33444445677774 322221 1111 11111111111100000011111111111 111112233
Q ss_pred HHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcC--Ccc-EEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHH
Q 002183 384 IELMLPLLKRGIAVHHSGLLPVIKELVELLFQEG--LVK-ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEY 460 (955)
Q Consensus 384 ~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g--~i~-VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey 460 (955)
+..+.....+.+..+||.|+..+|+.+.+.|.+. ..+ .|.+|.+.+.|||+=+.+-|| -||. .++|+.=
T Consensus 611 ~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRli----l~D~----dWNPa~d 682 (776)
T KOG0390|consen 611 FEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLI----LFDP----DWNPAVD 682 (776)
T ss_pred HHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEE----EeCC----CCCchhH
Confidence 4556666677788999999999999999999853 324 455777889999999999888 6787 8899999
Q ss_pred HHHhccCCCCCCCCceEEEEEeCC-cccHHHHHHh
Q 002183 461 IQMSGRAGRRGKDDRGICIIMVDE-QMEMNTLKDM 494 (955)
Q Consensus 461 ~Q~~GRaGR~G~~~~g~~ii~~~~-~~~~~~~~~l 494 (955)
.|.++||-|.|+....++|-+... .+|.+.+++-
T Consensus 683 ~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq 717 (776)
T KOG0390|consen 683 QQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQ 717 (776)
T ss_pred HHHHHHhccCCCcceEEEEEeecCCCchHHHHHHH
Confidence 999999999999888888888744 4566666553
No 144
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.44 E-value=4.4e-11 Score=145.28 Aligned_cols=63 Identities=24% Similarity=0.187 Sum_probs=53.5
Q ss_pred CCCCCHHHHHHHHHH----hc-----CCcEEEEcCCCCchHHHHHHHHHH-HHhcCCeEEEEccChhhHHHHH
Q 002183 74 SFELDPFQRVSVACL----ER-----NESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKY 136 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l----~~-----g~~vlv~apTGsGKTl~~~~~i~~-~l~~~~~vl~l~PtkaLa~Q~~ 136 (955)
+|+.++-|.+.+..+ .. ++.++|-||||+|||++|++|.+. +..++.+|||-+.|++|-+|..
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 699999999966554 33 367889999999999999998765 4457899999999999999985
No 145
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.41 E-value=6.2e-12 Score=149.84 Aligned_cols=123 Identities=12% Similarity=0.023 Sum_probs=95.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC--CeeEEeccccc-----------CCCCCE
Q 002183 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--DVGLMTGDVTL-----------SPNASC 161 (955)
Q Consensus 95 lv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~--~vg~~tGd~~~-----------~~~~~I 161 (955)
+..+.+|||||.+|+-.+...+..|+.+|+++|..+|..|..+.|++.|+ .+.+++++.+- +.+++|
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~I 243 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARV 243 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcE
Confidence 44455699999999999999999999999999999999999999999997 68888887642 456899
Q ss_pred EEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCC-ChH--HHHHH--HHhCCCcceEEEeccccC
Q 002183 162 LVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE-RGV--VWEES--IIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 162 lV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~-rg~--~~~~i--i~~l~~~~~~v~lSAT~~ 224 (955)
+|+|-.-+. ..+.++++||+||-|.-.-.+ .++ ....+ ......++.+|+-|||++
T Consensus 244 ViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 244 VVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred EEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 999965432 457899999999999554221 111 12222 222345789999999987
No 146
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.40 E-value=6.4e-11 Score=145.04 Aligned_cols=69 Identities=28% Similarity=0.273 Sum_probs=58.3
Q ss_pred CCCCCCHHHHHHHHHH----hcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHH
Q 002183 73 YSFELDPFQRVSVACL----ERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQ 141 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~ 141 (955)
-+|++++.|.+.+..+ .+++.+++.||||+|||+.|+.|++... ..+.+++|.++|++|-.|..++...
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcc
Confidence 4778999999998654 5666799999999999999999877665 4568999999999999999876654
No 147
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=8.9e-11 Score=138.37 Aligned_cols=123 Identities=14% Similarity=0.168 Sum_probs=89.2
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHH---hcC-Ce
Q 002183 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQ---EFK-DV 146 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~---~~~-~v 146 (955)
..+|..|++.|.-+--.+..|+ |.-+.||=|||+++.+|++.....|..|-+++..--||.-=...+.. ++| .|
T Consensus 73 R~lG~r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsv 150 (925)
T PRK12903 73 RVLGKRPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSV 150 (925)
T ss_pred HHhCCCcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCce
Confidence 4568889999988887787775 79999999999999999877666777787778888888754444444 444 77
Q ss_pred eEEecccccC-----CCCCEEEEeHHHH-----HHHHh--cCCccCCccceEEEEccccCC
Q 002183 147 GLMTGDVTLS-----PNASCLVMTTEIL-----RGMLY--RGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 147 g~~tGd~~~~-----~~~~IlV~Tpe~L-----~~~l~--~~~~~l~~l~~vIiDEaH~l~ 195 (955)
|++..+.+.. -.++|+++|..-| ++-+. ......+.+.+.|+||||.++
T Consensus 151 G~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 151 GINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred eeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 8777665432 1689999998653 33221 112335678899999999765
No 148
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.33 E-value=9.2e-11 Score=139.17 Aligned_cols=360 Identities=16% Similarity=0.144 Sum_probs=206.4
Q ss_pred CCCHHHHHHHHHH--hc--CCcEEEEcCCCCchHHHHHHHHHHHH--h-------cCCeEEEEccChhhHHHHHHHHHHh
Q 002183 76 ELDPFQRVSVACL--ER--NESVLVSAHTSAGKTAVAEYAIAMAF--R-------DKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 76 ~l~~~Q~~ai~~l--~~--g~~vlv~apTGsGKTl~~~~~i~~~l--~-------~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
+|+.||++.+..+ ++ +=+.|+|...|-|||+....-++... + +....||++|. .|+..|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 4899999999886 22 34789999999999997654443322 2 12347999996 7999999999999
Q ss_pred cC--CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCc
Q 002183 143 FK--DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPA 213 (955)
Q Consensus 143 ~~--~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~ 213 (955)
|+ +|-..+|.-.. -.+++|+|++++.+++-...- .-.++.|+|+||-|-+.+. ...+......+..+
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l--~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a~ 1129 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYL--IKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRAN 1129 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHH--HhcccceEEecCcceecch--HHHHHHHHHHHhhc
Confidence 99 45555554432 236799999999998644221 1236789999999999875 33333444445433
Q ss_pred ceEEEeccccC--ChHHHHHHHhhhcC--------------CCeEE----------------------------------
Q 002183 214 IKMVFLSATMS--NATQFAEWICHLHK--------------QPCHV---------------------------------- 243 (955)
Q Consensus 214 ~~~v~lSAT~~--n~~~~~~~l~~~~~--------------~~~~v---------------------------------- 243 (955)
. .+.||.|+- |..++...+..++. +|+--
T Consensus 1130 h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlK 1208 (1549)
T KOG0392|consen 1130 H-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLK 1208 (1549)
T ss_pred c-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3 467788862 44554443332210 00000
Q ss_pred --EecCCCcccceEEEeecCC--CceEEeeccc----------chhc-----hhhHHHHHHHHHHhhccCCccCCCC---
Q 002183 244 --VYTDFRPTPLQHYVFPVGG--SGLYLVVDEK----------EQFR-----EDNFVKLQDTFLKQKIGGRRENGKA--- 301 (955)
Q Consensus 244 --~~~~~rp~pl~~~~~~~~~--~~~~~~~~~~----------~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~--- 301 (955)
+..+.-|--++.|...-+. .++|..+..+ +.-. ..++-.++..+.+ -...|.--...
T Consensus 1209 edVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrK-LcnHpaLvlt~~hp 1287 (1549)
T KOG0392|consen 1209 EDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRK-LCNHPALVLTPVHP 1287 (1549)
T ss_pred HHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHH-hcCCcceeeCCCcc
Confidence 0000001111222111110 0111111000 0000 1111122222211 11111100000
Q ss_pred --------CCCccCCCC-CCCCCcHHHHHHHHHH----------------cCCCcEEEEEcChHHHHHHHHHhccCCCCC
Q 002183 302 --------SGRMAKGGS-GSGGSDIFKIVKMIME----------------RKFQPVIVFSFSRRECEQHAMSMSKLDFNT 356 (955)
Q Consensus 302 --------~~~~~~~~~-~~~~~~~~~l~~~l~~----------------~~~~~~IVF~~s~~~~~~la~~L~~~~~~~ 356 (955)
......+-. .....++.++-..+.+ -...+++|||.-+...+-+-..|-+.-+.+
T Consensus 1288 ~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mps 1367 (1549)
T KOG0392|consen 1288 DLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPS 1367 (1549)
T ss_pred hHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCc
Confidence 000000000 0111222222222222 134689999999999998887775422221
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcC-CccEEE-EcccccccCCC
Q 002183 357 QEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEG-LVKALF-ATETFAMGLNM 434 (955)
Q Consensus 357 ~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g-~i~VLv-aT~~la~Gidi 434 (955)
-...-+.|+.+|..|..+.++|.++ .|+||+ +|-+.+.|+|+
T Consensus 1368 ------------------------------------VtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNL 1411 (1549)
T KOG0392|consen 1368 ------------------------------------VTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNL 1411 (1549)
T ss_pred ------------------------------------eeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeecccccccc
Confidence 0023568999999999999999998 788876 66889999999
Q ss_pred CCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcc
Q 002183 435 PAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQM 486 (955)
Q Consensus 435 p~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~ 486 (955)
...+.||. ++- .++|-.=+|..-||.|-|+.....|+-+.+.+.
T Consensus 1412 TGADTVVF----vEH----DWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1412 TGADTVVF----VEH----DWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred CCCceEEE----Eec----CCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 98887773 333 455556699999999999998899999887763
No 149
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.32 E-value=3.3e-12 Score=119.56 Aligned_cols=133 Identities=22% Similarity=0.272 Sum_probs=84.1
Q ss_pred cCCcEEEEcCCCCchHHHHHH-HHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccc--ccCCCCCEEEEeH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY-AIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV--TLSPNASCLVMTT 166 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~-~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~--~~~~~~~IlV~Tp 166 (955)
+|+--++-.+||+|||.-.+- .+.+++.++.|+|++.|||.++..+++.++.. ++...+.-. ....+.-|-|||.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~--~~~~~t~~~~~~~~g~~~i~vMc~ 80 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL--PVRFHTNARMRTHFGSSIIDVMCH 80 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS--SEEEESTTSS----SSSSEEEEEH
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC--CcccCceeeeccccCCCccccccc
Confidence 456678899999999985443 35568889999999999999999999988654 233322211 2345677889999
Q ss_pred HHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC--CCcceEEEeccccCChH
Q 002183 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL--PPAIKMVFLSATMSNAT 227 (955)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l--~~~~~~v~lSAT~~n~~ 227 (955)
..+...+.+ .....++++||+||||..... .-...-.+..+ .....+|++|||+|...
T Consensus 81 at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~--sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 81 ATYGHFLLN-PCRLKNYDVIIMDECHFTDPT--SIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp HHHHHHHHT-SSCTTS-SEEEECTTT--SHH--HHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred HHHHHHhcC-cccccCccEEEEeccccCCHH--HHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 998877766 445789999999999975422 11111122222 23468999999999654
No 150
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.32 E-value=2.1e-10 Score=136.23 Aligned_cols=124 Identities=18% Similarity=0.178 Sum_probs=93.8
Q ss_pred hhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----C
Q 002183 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----D 145 (955)
Q Consensus 70 ~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~ 145 (955)
....|..|++.|.-+.-.+..| -++.+.||.|||+++.+|++.....|..|-|++++..||.+-+..+...|. .
T Consensus 70 ~R~lG~r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLs 147 (870)
T CHL00122 70 FRTLGLRHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLT 147 (870)
T ss_pred HHHhCCCCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCc
Confidence 3467888999998876666554 699999999999999999876556788899999999999998887776654 6
Q ss_pred eeEEecccccCC-----CCCEEEEeHHH-----HHHHHhc--CCccCCccceEEEEccccCC
Q 002183 146 VGLMTGDVTLSP-----NASCLVMTTEI-----LRGMLYR--GSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 146 vg~~tGd~~~~~-----~~~IlV~Tpe~-----L~~~l~~--~~~~l~~l~~vIiDEaH~l~ 195 (955)
||++.++.+... .++|+.+|..- |++.+.. .....+.+.+.|+||||.++
T Consensus 148 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 148 VGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred eeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 777776655322 57999999853 4443321 12235678899999999765
No 151
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.32 E-value=4.8e-11 Score=136.39 Aligned_cols=369 Identities=14% Similarity=0.140 Sum_probs=215.0
Q ss_pred CCCCCCHHHHHHHHHH----hcCCcEEEEcCCCCchHH--HHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCC-
Q 002183 73 YSFELDPFQRVSVACL----ERNESVLVSAHTSAGKTA--VAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD- 145 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl--~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~- 145 (955)
-+++|-++|.-.+..| ..+-+.|++...|-|||. ++.++.+......+.-||++|.-.|-| |.++|.++.|.
T Consensus 396 s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleN-WlrEf~kwCPsl 474 (941)
T KOG0389|consen 396 SGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLEN-WLREFAKWCPSL 474 (941)
T ss_pred CCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHH-HHHHHHHhCCce
Confidence 3678999999999886 567788999999999996 455666666666677899999977766 78999999994
Q ss_pred -eeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcC-CccCCccceEEEEccccCCCCCChHHHHHHHHhCCC
Q 002183 146 -VGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRG-SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPP 212 (955)
Q Consensus 146 -vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~ 212 (955)
|-..+|...- ....+|+++|+....+--... -..-.+++++|+||.|++-+.. ...|.. +..++
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~-LM~I~- 551 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKH-LMSIN- 551 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHH-hcccc-
Confidence 5556675431 236899999997653211000 0112367899999999998752 223332 22333
Q ss_pred cceEEEeccccC--ChHHHHHHHhhhcCC----------------Ce------------------EEEec----------
Q 002183 213 AIKMVFLSATMS--NATQFAEWICHLHKQ----------------PC------------------HVVYT---------- 246 (955)
Q Consensus 213 ~~~~v~lSAT~~--n~~~~~~~l~~~~~~----------------~~------------------~v~~~---------- 246 (955)
.-..++||.|+- |-.++...+..+... .. ..+..
T Consensus 552 An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~K~q 631 (941)
T KOG0389|consen 552 ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRLKSQ 631 (941)
T ss_pred ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 345678888862 445554444322000 00 00000
Q ss_pred --CCCcccceEEEee--c-----------------------C--CCc-------------------eEEe---------e
Q 002183 247 --DFRPTPLQHYVFP--V-----------------------G--GSG-------------------LYLV---------V 269 (955)
Q Consensus 247 --~~rp~pl~~~~~~--~-----------------------~--~~~-------------------~~~~---------~ 269 (955)
..-|...++.-+. . + ..+ .|-. +
T Consensus 632 VL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~i 711 (941)
T KOG0389|consen 632 VLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRI 711 (941)
T ss_pred HHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHH
Confidence 0000000000000 0 0 000 0000 0
Q ss_pred cccchhchhhHHHHH---HHHHHhh-----ccCCccCCC--CCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcCh
Q 002183 270 DEKEQFREDNFVKLQ---DTFLKQK-----IGGRRENGK--ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSR 339 (955)
Q Consensus 270 ~~~~~~~~~~~~~~~---~~l~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~ 339 (955)
-..+.|...+...+. ..+.... ...+.-... ....+.. ...-..+..++..+.+ ++.+++||..-.
T Consensus 712 l~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~md---SgK~r~L~~LLp~~k~-~G~RVLiFSQFT 787 (941)
T KOG0389|consen 712 LNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMD---SGKCRKLKELLPKIKK-KGDRVLIFSQFT 787 (941)
T ss_pred hCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhh---hhhHhHHHHHHHHHhh-cCCEEEEeeHHH
Confidence 011123333322222 1111110 000000000 0000000 0112233444444444 448999999877
Q ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcC--
Q 002183 340 RECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEG-- 417 (955)
Q Consensus 340 ~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g-- 417 (955)
...+-+-..|..+++. ..-+.|...-..|..++..|...
T Consensus 788 qmLDILE~~L~~l~~~---------------------------------------ylRLDGsTqV~~RQ~lId~Fn~d~d 828 (941)
T KOG0389|consen 788 QMLDILEVVLDTLGYK---------------------------------------YLRLDGSTQVNDRQDLIDEFNTDKD 828 (941)
T ss_pred HHHHHHHHHHHhcCce---------------------------------------EEeecCCccchHHHHHHHhhccCCc
Confidence 7777666666554432 44567888889999999999854
Q ss_pred CccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHh
Q 002183 418 LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVL 496 (955)
Q Consensus 418 ~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~ 496 (955)
..-.|.+|.+.+-|||+-+.++|| -||. ..+|-+=.|.--||.|.|+....+++-+.+...-.+.+.++..
T Consensus 829 ifVFLLSTKAGG~GINLt~An~VI----ihD~----dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~ 899 (941)
T KOG0389|consen 829 IFVFLLSTKAGGFGINLTCANTVI----IHDI----DFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAK 899 (941)
T ss_pred eEEEEEeeccCcceecccccceEE----Eeec----CCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHH
Confidence 334688999999999999999999 4554 4455556799999999999989999999877755555555544
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.27 E-value=3.4e-10 Score=136.00 Aligned_cols=148 Identities=20% Similarity=0.191 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHh--------cCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHHHHHHHhcC-
Q 002183 77 LDPFQRVSVACLE--------RNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFK- 144 (955)
Q Consensus 77 l~~~Q~~ai~~l~--------~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~~~l~~~~~- 144 (955)
-..||-+|++.+. .|-=++--|.||+|||++= .-|+.+|.. |.|..|..-.|.|--|.-..+++..+
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L 487 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNL 487 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCC
Confidence 4578999998762 2223555899999999863 334445543 56899999999999999999988776
Q ss_pred ---CeeEEeccccc----------------------------------------------------CC------CCCEEE
Q 002183 145 ---DVGLMTGDVTL----------------------------------------------------SP------NASCLV 163 (955)
Q Consensus 145 ---~vg~~tGd~~~----------------------------------------------------~~------~~~IlV 163 (955)
+..++.|+..+ ++ .++++|
T Consensus 488 ~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V 567 (1110)
T TIGR02562 488 SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLV 567 (1110)
T ss_pred CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEE
Confidence 55666654310 00 267999
Q ss_pred EeHHHHHHHH--hcCCc-cCC----ccceEEEEccccCCCCCChHHHHHHHHhC-CCcceEEEeccccCCh
Q 002183 164 MTTEILRGML--YRGSE-VLK----EVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLSATMSNA 226 (955)
Q Consensus 164 ~Tpe~L~~~l--~~~~~-~l~----~l~~vIiDEaH~l~d~~rg~~~~~ii~~l-~~~~~~v~lSAT~~n~ 226 (955)
+|+..+.... .++.. .+. .=+.|||||+|-+.... ...+..++..+ --+.++++||||+|..
T Consensus 568 ~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~ 637 (1110)
T TIGR02562 568 CTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPA 637 (1110)
T ss_pred ecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHH
Confidence 9999887655 23221 111 12589999999765432 22333333322 2367899999999954
No 153
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.25 E-value=1.8e-11 Score=106.53 Aligned_cols=72 Identities=35% Similarity=0.475 Sum_probs=66.5
Q ss_pred hcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCC
Q 002183 392 KRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRG 471 (955)
Q Consensus 392 ~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G 471 (955)
...+..+||++++.+|..++..|++|..+||++|+++++|+|+|.++.|| .++. +.++..|.|++||++|.|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi----~~~~----~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVI----IYDL----PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEE----EeCC----CCCHHHHHHhhcccccCC
Confidence 34588999999999999999999999999999999999999999999888 5666 889999999999999986
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=7.6e-10 Score=135.74 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=62.2
Q ss_pred hcCCCCC-CHHHHHHHHH----HhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cC--CeEEEEccChhhHHHHHHHHHHh
Q 002183 71 KTYSFEL-DPFQRVSVAC----LERNESVLVSAHTSAGKTAVAEYAIAMAFR-DK--QRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 71 ~~~~f~l-~~~Q~~ai~~----l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~--~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
-.|||++ +|.|.+.+.. +..++++++.||||+|||++.+.+.+.... .+ .+++|.+.|..=..|..++++..
T Consensus 4 v~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 4 VYFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred eecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 3589995 9999998765 578899999999999999999998887765 34 69999999999999999999883
No 155
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=1.1e-09 Score=129.67 Aligned_cols=123 Identities=17% Similarity=0.188 Sum_probs=96.3
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----Ce
Q 002183 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~v 146 (955)
..+|..|++.|.-+--.+..|+ |..+.||-|||+++.+|++.....|..|-++++.--||..=++.+...+. .|
T Consensus 80 R~lG~r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtv 157 (939)
T PRK12902 80 RVLGMRHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSV 157 (939)
T ss_pred HHhCCCcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeE
Confidence 4578889999988777777665 89999999999999999988777888899999999999987766665544 77
Q ss_pred eEEecccccCC-----CCCEEEEeHHHH-----HHHHhc--CCccCCccceEEEEccccCC
Q 002183 147 GLMTGDVTLSP-----NASCLVMTTEIL-----RGMLYR--GSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 147 g~~tGd~~~~~-----~~~IlV~Tpe~L-----~~~l~~--~~~~l~~l~~vIiDEaH~l~ 195 (955)
|++.++.+... .++|+++|...+ ++.+.. .....+.+.+.|+||||.++
T Consensus 158 g~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 158 GLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 77776654322 689999999765 554432 22346788999999999765
No 156
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.11 E-value=1.7e-09 Score=119.44 Aligned_cols=153 Identities=23% Similarity=0.200 Sum_probs=99.3
Q ss_pred HHHHHHHHH---h----------cCCcEEEEcCCCCchHHHHHHHHHHHHhcC-----CeEEEEccChhhHHHHHHHHHH
Q 002183 80 FQRVSVACL---E----------RNESVLVSAHTSAGKTAVAEYAIAMAFRDK-----QRVIYTSPLKALSNQKYRELHQ 141 (955)
Q Consensus 80 ~Q~~ai~~l---~----------~g~~vlv~apTGsGKTl~~~~~i~~~l~~~-----~~vl~l~PtkaLa~Q~~~~l~~ 141 (955)
||.+++..+ . ....++++..+|+|||+.+...+......+ ..+||++|. .+..||..++..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 688888776 2 446789999999999998876665443322 259999999 888999999999
Q ss_pred hcC----CeeEEeccc-------ccCCCCCEEEEeHHHHHHHHh-cCC--ccCCccceEEEEccccCCCCCChHHHHHHH
Q 002183 142 EFK----DVGLMTGDV-------TLSPNASCLVMTTEILRGMLY-RGS--EVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (955)
Q Consensus 142 ~~~----~vg~~tGd~-------~~~~~~~IlV~Tpe~L~~~l~-~~~--~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii 207 (955)
.++ ++-...|+. ......+++|+|++.+..... ... ..--++++||+||+|.+.+. .......+
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~~~l 157 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRYKAL 157 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHHHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccccccc
Confidence 983 455566665 234578999999999981100 000 01134899999999999654 33444455
Q ss_pred HhCCCcceEEEeccccC-C-hHHHHHHHhhh
Q 002183 208 IFLPPAIKMVFLSATMS-N-ATQFAEWICHL 236 (955)
Q Consensus 208 ~~l~~~~~~v~lSAT~~-n-~~~~~~~l~~~ 236 (955)
..+. ....++||||+- | ..++...+..+
T Consensus 158 ~~l~-~~~~~lLSgTP~~n~~~dl~~~l~~L 187 (299)
T PF00176_consen 158 RKLR-ARYRWLLSGTPIQNSLEDLYSLLRFL 187 (299)
T ss_dssp HCCC-ECEEEEE-SS-SSSGSHHHHHHHHHH
T ss_pred cccc-cceEEeeccccccccccccccchhee
Confidence 5565 667889999974 2 35666666544
No 157
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.08 E-value=1.9e-08 Score=109.44 Aligned_cols=124 Identities=16% Similarity=0.145 Sum_probs=91.6
Q ss_pred CCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHH
Q 002183 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (955)
Q Consensus 329 ~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~ 408 (955)
..+.|||..-....+-+.-.|.+.|+. ..-+-|+|+|..|.
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfs---------------------------------------cVkL~GsMs~~ard 678 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFS---------------------------------------CVKLVGSMSPAARD 678 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCce---------------------------------------EEEeccCCChHHHH
Confidence 346777776666666666666665554 24568999999999
Q ss_pred HHHHHHhcC-CccE-EEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcc
Q 002183 409 LVELLFQEG-LVKA-LFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQM 486 (955)
Q Consensus 409 ~v~~~F~~g-~i~V-LvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~ 486 (955)
..++.|++. .++| |++-.+.+..+|+-..+.|| ..|+ |++|+--+|.-.|..|.|+-....++.++-+..
T Consensus 679 atik~F~nd~~c~vfLvSLkAGGVALNLteASqVF----mmDP----WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 679 ATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVF----MMDP----WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred HHHHHhccCCCeEEEEEEeccCceEeeechhceeE----eecc----cccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 999999975 4554 56667888889999999999 5566 889999999999999999987788888885553
Q ss_pred cHHHHHHhHhCCC
Q 002183 487 EMNTLKDMVLGKP 499 (955)
Q Consensus 487 ~~~~~~~l~~~~~ 499 (955)
-.+.+-++-+.+.
T Consensus 751 iE~kIieLQeKKa 763 (791)
T KOG1002|consen 751 IEEKIIELQEKKA 763 (791)
T ss_pred HHHHHHHHHHHHh
Confidence 3334444444433
No 158
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.02 E-value=2.8e-08 Score=117.05 Aligned_cols=319 Identities=13% Similarity=0.122 Sum_probs=177.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhcC-Cee-EEe-cccccCC-CCCEEEEeH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFK-DVG-LMT-GDVTLSP-NASCLVMTT 166 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg-~~t-Gd~~~~~-~~~IlV~Tp 166 (955)
.-.+|-||.|||||.+..-.+...+ .++.++++++-.++|+.+...+|+...- +.. ... ++..++. ..+-++++.
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~rLivqI 129 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYDRLIVQI 129 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccCeEEEEe
Confidence 4568899999999987766655555 4578999999999999999999986532 111 111 1222322 456778887
Q ss_pred HHHHHHHhcCCccCCccceEEEEccccCCCCCCh-------HHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhc-C
Q 002183 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG-------VVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLH-K 238 (955)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg-------~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~-~ 238 (955)
+.|.... ...+.++++||+||+-.+...-+. .++..+...+.....+|++-||+.+. .-+++.... .
T Consensus 130 dSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~--tvdFl~~~Rp~ 204 (824)
T PF02399_consen 130 DSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ--TVDFLASCRPD 204 (824)
T ss_pred hhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH--HHHHHHHhCCC
Confidence 7775442 335778999999999766543332 23333333455677899999999844 456666554 3
Q ss_pred CCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCcc---CCCCCCCccCCCCCCCCC
Q 002183 239 QPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRE---NGKASGRMAKGGSGSGGS 315 (955)
Q Consensus 239 ~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 315 (955)
.+++++..++...-... +... +.. .+....... .+.........+ ........... ......
T Consensus 205 ~~i~vI~n~y~~~~fs~-------R~~~-~~~---~l~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 269 (824)
T PF02399_consen 205 ENIHVIVNTYASPGFSN-------RRCT-FLR---SLGTDTLAA---ALNPEDENADTSPTPKHSPDPTATAA-ISNDET 269 (824)
T ss_pred CcEEEEEeeeecCCccc-------ceEE-Eec---ccCcHHHHH---HhCCcccccccCCCcCCCCccccccc-cccchh
Confidence 45666655543322110 0011 111 111111111 111000000000 00000000000 011112
Q ss_pred cH-HHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcC
Q 002183 316 DI-FKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (955)
Q Consensus 316 ~~-~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~g 394 (955)
.. ..|...+. .+..+-||+.|...++.++....... ..
T Consensus 270 tF~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~---------------------------------------~~ 308 (824)
T PF02399_consen 270 TFFSELLARLN--AGKNICVFSSTVSFAEIVARFCARFT---------------------------------------KK 308 (824)
T ss_pred hHHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcC---------------------------------------Ce
Confidence 22 23333333 44678899999999998888776531 12
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCc--EEEEecceeccCCCCcccCHHHHHHHhccCCCCCC
Q 002183 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAK--TVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGK 472 (955)
Q Consensus 395 i~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~--~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~ 472 (955)
|..++|.-... .++. =++.+|++=|+++..|+++... +-|+..... . ..-.+..+..||+||.-.-..
T Consensus 309 Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~--~--~~gpd~~s~~Q~lgRvR~l~~ 378 (824)
T PF02399_consen 309 VLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKP--M--SYGPDMVSVYQMLGRVRSLLD 378 (824)
T ss_pred EEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEEecC--C--CCCCcHHHHHHHHHHHHhhcc
Confidence 56666654444 2321 3578999999999999999653 234422211 1 011244568999999977664
Q ss_pred CCceEEEEEeCC
Q 002183 473 DDRGICIIMVDE 484 (955)
Q Consensus 473 ~~~g~~ii~~~~ 484 (955)
..+++..+.
T Consensus 379 ---~ei~v~~d~ 387 (824)
T PF02399_consen 379 ---NEIYVYIDA 387 (824)
T ss_pred ---CeEEEEEec
Confidence 345555544
No 159
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.85 E-value=3.3e-07 Score=104.23 Aligned_cols=147 Identities=20% Similarity=0.243 Sum_probs=100.0
Q ss_pred CCCCCCHHHHHHHHHHh-----cCCcEEEEcCCCCchHHHHHHHHHHH-----Hhc-----CCeEEEEccChhhHHHHHH
Q 002183 73 YSFELDPFQRVSVACLE-----RNESVLVSAHTSAGKTAVAEYAIAMA-----FRD-----KQRVIYTSPLKALSNQKYR 137 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~-----~g~~vlv~apTGsGKTl~~~~~i~~~-----l~~-----~~~vl~l~PtkaLa~Q~~~ 137 (955)
+.+++-|+|+.++..+. .+...|+....|-|||+.-.-.|+.. .+. ...+||++|- .|..||+.
T Consensus 322 ~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~ 400 (901)
T KOG4439|consen 322 LKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEA 400 (901)
T ss_pred ceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHH
Confidence 44569999999999872 34568999999999999543333322 111 1259999995 79999999
Q ss_pred HHHHhcC----CeeEEecccc--cC----CCCCEEEEeHHHHHH----HHh--cCCccCC--ccceEEEEccccCCCCCC
Q 002183 138 ELHQEFK----DVGLMTGDVT--LS----PNASCLVMTTEILRG----MLY--RGSEVLK--EVAWVIFDEIHYMKDRER 199 (955)
Q Consensus 138 ~l~~~~~----~vg~~tGd~~--~~----~~~~IlV~Tpe~L~~----~l~--~~~~~l~--~l~~vIiDEaH~l~d~~r 199 (955)
++..... .|.+++|... +. ...+|||+|+..+.+ -+. .....+. .|..||+||||.+.+.
T Consensus 401 Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~-- 478 (901)
T KOG4439|consen 401 EVARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS-- 478 (901)
T ss_pred HHHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc--
Confidence 9998876 5777888763 22 268999999986654 111 1122233 3567999999999875
Q ss_pred hHHHHHHHHhCCCcceEEEecccc
Q 002183 200 GVVWEESIIFLPPAIKMVFLSATM 223 (955)
Q Consensus 200 g~~~~~ii~~l~~~~~~v~lSAT~ 223 (955)
...-...+..|.. .-..++|+|+
T Consensus 479 ~tq~S~AVC~L~a-~~RWclTGTP 501 (901)
T KOG4439|consen 479 NTQCSKAVCKLSA-KSRWCLTGTP 501 (901)
T ss_pred chhHHHHHHHHhh-cceeecccCc
Confidence 3333334444443 3357889996
No 160
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.80 E-value=1.6e-07 Score=106.15 Aligned_cols=123 Identities=12% Similarity=0.062 Sum_probs=97.1
Q ss_pred CcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcC
Q 002183 315 SDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (955)
Q Consensus 315 ~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~g 394 (955)
..+..++..+.. .+.++++|..-.+..+-+-.+|...+++
T Consensus 1031 ~~LDeLL~kLka-egHRvL~yfQMTkM~dl~EdYl~yr~Y~--------------------------------------- 1070 (1185)
T KOG0388|consen 1031 VVLDELLPKLKA-EGHRVLMYFQMTKMIDLIEDYLVYRGYT--------------------------------------- 1070 (1185)
T ss_pred eeHHHHHHHhhc-CCceEEehhHHHHHHHHHHHHHHhhccc---------------------------------------
Confidence 344455555543 4588999988888888777777655444
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCcc-EEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCC
Q 002183 395 IAVHHSGLLPVIKELVELLFQEGLVK-ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD 473 (955)
Q Consensus 395 i~~~H~~l~~~~R~~v~~~F~~g~i~-VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~ 473 (955)
..-+.|+.....|..+...|+...+- .|.+|.+.+.|||+.+.+.|| .||. .++|.-=.|...||.|.|+.
T Consensus 1071 ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTVi----FYdS----DWNPT~D~QAMDRAHRLGQT 1142 (1185)
T KOG0388|consen 1071 YLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVI----FYDS----DWNPTADQQAMDRAHRLGQT 1142 (1185)
T ss_pred eEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEE----EecC----CCCcchhhHHHHHHHhccCc
Confidence 23457888889999999999976544 578999999999999999999 7888 77888888999999999998
Q ss_pred CceEEEEEeCCc
Q 002183 474 DRGICIIMVDEQ 485 (955)
Q Consensus 474 ~~g~~ii~~~~~ 485 (955)
....|+-+....
T Consensus 1143 rdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1143 RDVTVYRLITRG 1154 (1185)
T ss_pred cceeeeeecccc
Confidence 888888877654
No 161
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.79 E-value=3e-08 Score=116.72 Aligned_cols=144 Identities=19% Similarity=0.146 Sum_probs=97.8
Q ss_pred CCCCCCHHHHHHHHHH----hcCCcEEEEcCCCCchHHHHHHHHHHH---HhcCCeEEEEccChhhHHHHHHHHHHhcCC
Q 002183 73 YSFELDPFQRVSVACL----ERNESVLVSAHTSAGKTAVAEYAIAMA---FRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~~~~~i~~~---l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~ 145 (955)
-|-++.+||...+..+ .++-+.|++..+|-|||..-.-.|... ....+.-+|++|+-.|.| |..+|..+.+.
T Consensus 391 ~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPS 469 (1157)
T KOG0386|consen 391 QGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPS 469 (1157)
T ss_pred cCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccccc
Confidence 3557999999999886 556689999999999998544333332 234567899999999998 45778888787
Q ss_pred eeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCC--ccceEEEEccccCCCCCChHHHHHHHHhCCC
Q 002183 146 VGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLK--EVAWVIFDEIHYMKDRERGVVWEESIIFLPP 212 (955)
Q Consensus 146 vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~--~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~ 212 (955)
+..+.+.-+. ...++|+++|+|-+.. ....+. ++.++||||-|+|.+. .-.+...+...-.
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~y~ 543 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTHYR 543 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccch--hhHHHHHhhcccc
Confidence 6654433221 2468999999997643 222333 4568999999999875 2233333332222
Q ss_pred cceEEEecccc
Q 002183 213 AIKMVFLSATM 223 (955)
Q Consensus 213 ~~~~v~lSAT~ 223 (955)
....+++|.|+
T Consensus 544 ~q~RLLLTGTP 554 (1157)
T KOG0386|consen 544 AQRRLLLTGTP 554 (1157)
T ss_pred chhhhhhcCCh
Confidence 34467788885
No 162
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.76 E-value=3.2e-08 Score=114.63 Aligned_cols=344 Identities=20% Similarity=0.215 Sum_probs=199.7
Q ss_pred HHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC-----CeEEEEccChhhHHHHHHHHHHhcC-CeeEEeccc----
Q 002183 84 SVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK-----QRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDV---- 153 (955)
Q Consensus 84 ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~-----~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~tGd~---- 153 (955)
.+..+..+..+++-+.||+|||.-+.--|+..+..+ ..+.+.-|++--+.-+.+++.+.-. .+|-..|..
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~ 465 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFD 465 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccc
Confidence 344556778889999999999998888888777543 2467778988777777776655332 344333322
Q ss_pred --ccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCC-CCCChHHHHHHHHhCCCcceEEEeccccCChHHHH
Q 002183 154 --TLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK-DRERGVVWEESIIFLPPAIKMVFLSATMSNATQFA 230 (955)
Q Consensus 154 --~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~-d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~ 230 (955)
...+...|+.+|-+.+.++++++ +..+.++|+||.|.-. +..+-..++.-++...+....+++|||+ |.+-|.
T Consensus 466 Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatI-dTd~f~ 541 (1282)
T KOG0921|consen 466 SATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATI-DTDLFT 541 (1282)
T ss_pred ccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhccc-chhhhh
Confidence 12345689999999999999876 5688899999999553 2222222333333445678899999998 444555
Q ss_pred HHHhhhcCCCeEEEecCCCcccceEEE-----------eecC-CCceEEeecccchhch---hhHHHHHHHHHHhhccCC
Q 002183 231 EWICHLHKQPCHVVYTDFRPTPLQHYV-----------FPVG-GSGLYLVVDEKEQFRE---DNFVKLQDTFLKQKIGGR 295 (955)
Q Consensus 231 ~~l~~~~~~~~~v~~~~~rp~pl~~~~-----------~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~ 295 (955)
.+++.. |.. ....|..|.+.+. +... ..+-+...+....... .+..... ++
T Consensus 542 ~~f~~~---p~~--~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~---------dd 607 (1282)
T KOG0921|consen 542 NFFSSI---PDV--TVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILC---------DP 607 (1282)
T ss_pred hhhccc---cce--eeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccccccccc---------Ch
Confidence 555532 111 1222222322110 0000 0000000000000000 0000000 00
Q ss_pred ccCCCCCCCccCCC--CCCCCCcHHHHHHH----HHHc-CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Q 002183 296 RENGKASGRMAKGG--SGSGGSDIFKIVKM----IMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368 (955)
Q Consensus 296 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~----l~~~-~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~ 368 (955)
. .....++. ..........+++. +... -.+-++||.+.-...-.+...|.....-.
T Consensus 608 ~-----~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg------------ 670 (1282)
T KOG0921|consen 608 S-----YNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFG------------ 670 (1282)
T ss_pred h-----hcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhc------------
Confidence 0 00000000 01112222233333 3222 23457889888887777776664321110
Q ss_pred HHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceecc
Q 002183 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448 (955)
Q Consensus 369 ~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d 448 (955)
.+-++.+...|+.+...+..+|.+....|..++++.|.+...-+.+.++..|+..+.-+-
T Consensus 671 --------------------~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~ 730 (1282)
T KOG0921|consen 671 --------------------QANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKE 730 (1282)
T ss_pred --------------------cchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeee
Confidence 111233667799988888888888889999999999999999999999887776554221
Q ss_pred CC----------CCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 449 GD----------SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 449 ~~----------~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
.. ...+.+.....|+.||+||.-. |.|+.+++..
T Consensus 731 ~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~---G~~f~lcs~a 774 (1282)
T KOG0921|consen 731 KLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP---GFCFHLCSRA 774 (1282)
T ss_pred eeeccccceeeeeeecccccchHhhcccCceecc---cccccccHHH
Confidence 10 2346678889999999999774 8899888654
No 163
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.68 E-value=1.2e-06 Score=105.75 Aligned_cols=123 Identities=17% Similarity=0.122 Sum_probs=81.9
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHH---hcC-Ce
Q 002183 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQ---EFK-DV 146 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~---~~~-~v 146 (955)
..|+..++++|.-+=-.|.+|+ |.-+.||=|||+++.+|++.....|..|-+++..--||.-=...+.. ++| .|
T Consensus 164 ~~W~m~~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsv 241 (1112)
T PRK12901 164 ITWDMVHYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSV 241 (1112)
T ss_pred ccCCCcccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCce
Confidence 3456667777766655566664 89999999999999999877766777777777777787654444443 444 67
Q ss_pred eEEec-ccccC-----CCCCEEEEeHHHH-----HH-HHhcC-CccCCccceEEEEccccCC
Q 002183 147 GLMTG-DVTLS-----PNASCLVMTTEIL-----RG-MLYRG-SEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 147 g~~tG-d~~~~-----~~~~IlV~Tpe~L-----~~-~l~~~-~~~l~~l~~vIiDEaH~l~ 195 (955)
|++.. +.+.. -.++|..+|..-+ ++ |..+. ....+.+.+.|+||||.++
T Consensus 242 g~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 242 DCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred eecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 76654 22211 2689999997543 32 22211 2235678899999999764
No 164
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.61 E-value=1.8e-06 Score=110.11 Aligned_cols=359 Identities=16% Similarity=0.130 Sum_probs=205.3
Q ss_pred CCCHHHHHHHHHHh-----cCCcEEEEcCCCCchHHHHHHHHHHHHhc----CCeEEEEccChhhHHHHHHHHHHhcCC-
Q 002183 76 ELDPFQRVSVACLE-----RNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKD- 145 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~-----~g~~vlv~apTGsGKTl~~~~~i~~~l~~----~~~vl~l~PtkaLa~Q~~~~l~~~~~~- 145 (955)
+++++|.+.+..+. .+.+.+++...|.|||+.....+...... .+.+++++|+ ++..+|.+++..+.+.
T Consensus 338 ~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~~ 416 (866)
T COG0553 338 ELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPDL 416 (866)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCccc
Confidence 48999999987754 36788999999999998766555442222 3578999997 6777888999777663
Q ss_pred --eeEEeccccc--------C--CC------CCEEEEeHHHHHHHH-hcCCccCCccceEEEEccccCCCCCChHHHHHH
Q 002183 146 --VGLMTGDVTL--------S--PN------ASCLVMTTEILRGML-YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES 206 (955)
Q Consensus 146 --vg~~tGd~~~--------~--~~------~~IlV~Tpe~L~~~l-~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~i 206 (955)
+-...|.... . .. .+++++|++.+...+ ..+...-..++++|+||+|.+.+.. +..+..+
T Consensus 417 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~~~~l 495 (866)
T COG0553 417 RLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSEGKAL 495 (866)
T ss_pred cceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHHHHHH
Confidence 4455665431 0 01 689999999998732 1111223467899999999987643 3333333
Q ss_pred HHhCCCcceEEEecccc-CCh-HHHHHHHh-hhcCCCeEEE---ecCCCcccce-----------------------EEE
Q 002183 207 IIFLPPAIKMVFLSATM-SNA-TQFAEWIC-HLHKQPCHVV---YTDFRPTPLQ-----------------------HYV 257 (955)
Q Consensus 207 i~~l~~~~~~v~lSAT~-~n~-~~~~~~l~-~~~~~~~~v~---~~~~rp~pl~-----------------------~~~ 257 (955)
. .+.... .+.+|.|+ .|. .++...+. .......... ....-..|.. .++
T Consensus 496 ~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~f~ 573 (866)
T COG0553 496 Q-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSPFI 573 (866)
T ss_pred H-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHh
Confidence 3 444333 38889997 322 34444444 2211000000 0000000000 000
Q ss_pred eecCCCc--eE----------EeecccchhchhhHHHHHH-------HHHHh--------------------------hc
Q 002183 258 FPVGGSG--LY----------LVVDEKEQFREDNFVKLQD-------TFLKQ--------------------------KI 292 (955)
Q Consensus 258 ~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~-------~l~~~--------------------------~~ 292 (955)
....... +. ..++..+ ....-|..... .+... ..
T Consensus 574 lrr~k~~~~v~~~Lp~k~e~~~~~~l~~-~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~ 652 (866)
T COG0553 574 LRRTKEDVEVLKELPPKIEKVLECELSE-EQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQIC 652 (866)
T ss_pred hcccccchhHHHhCChhhhhhhhhcccH-HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhc
Confidence 0000000 00 0000000 00000111110 00000 00
Q ss_pred cCCccCCCCCCCccCCC----------------CCCCC-CcHHHHHHHH---HHcCCC--cEEEEEcChHHHHHHHHHhc
Q 002183 293 GGRRENGKASGRMAKGG----------------SGSGG-SDIFKIVKMI---MERKFQ--PVIVFSFSRRECEQHAMSMS 350 (955)
Q Consensus 293 ~~~~~~~~~~~~~~~~~----------------~~~~~-~~~~~l~~~l---~~~~~~--~~IVF~~s~~~~~~la~~L~ 350 (955)
..|.............. ..... .....+.+.+ ....+. ++++|+......+-+...+.
T Consensus 653 ~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~ 732 (866)
T COG0553 653 NHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLK 732 (866)
T ss_pred cCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHH
Confidence 00000000000000000 00000 2233333333 122344 89999998888888888776
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcC--CccEEEEcccc
Q 002183 351 KLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEG--LVKALFATETF 428 (955)
Q Consensus 351 ~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g--~i~VLvaT~~l 428 (955)
..++ .+..++|+++...|...+..|.++ ..-.+++|.+.
T Consensus 733 ~~~~---------------------------------------~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kag 773 (866)
T COG0553 733 ALGI---------------------------------------KYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAG 773 (866)
T ss_pred hcCC---------------------------------------cEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEeccc
Confidence 6442 267889999999999999999985 55577788899
Q ss_pred cccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcc
Q 002183 429 AMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQM 486 (955)
Q Consensus 429 a~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~ 486 (955)
+.|+|.-..++|| .||. +++|....|...||.|.|++....++-+.....
T Consensus 774 g~glnLt~a~~vi----~~d~----~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 774 GLGLNLTGADTVI----LFDP----WWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ccceeecccceEE----Eecc----ccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 9999999999999 8888 999999999999999999988888888776653
No 165
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.52 E-value=2.1e-06 Score=107.61 Aligned_cols=129 Identities=16% Similarity=0.083 Sum_probs=89.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHH--hcCCeEEEEccChhhHHHHHHHHHHhcCCeeE--Eecccc-----cC-CCCCE
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFKDVGL--MTGDVT-----LS-PNASC 161 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l--~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~--~tGd~~-----~~-~~~~I 161 (955)
+..+|.=-||||||+.-.......+ ...+.+++++-.+.|-.|....|..+...... -..... +. ....|
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~~i 353 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKGKI 353 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCCcE
Confidence 5689999999999998766554444 34689999999999999999999987652211 111111 12 24589
Q ss_pred EEEeHHHHHHHHhcC-C-ccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccC
Q 002183 162 LVMTTEILRGMLYRG-S-EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 162 lV~Tpe~L~~~l~~~-~-~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
+|+|.+.+....... . ..-++==+||+||||+--. |..-..+-..+++ ...++||+||-
T Consensus 354 i~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~---G~~~~~~~~~~~~-a~~~gFTGTPi 414 (962)
T COG0610 354 IVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY---GELAKLLKKALKK-AIFIGFTGTPI 414 (962)
T ss_pred EEEEecccchhhhcccccccCCCcEEEEEechhhccc---cHHHHHHHHHhcc-ceEEEeeCCcc
Confidence 999999998777543 1 1122223789999997643 5444444445554 78999999984
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.40 E-value=7.8e-07 Score=96.94 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=59.8
Q ss_pred cCCCCCCHHHHHHH----HHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCC-----eEEEEccChhhHHHHHHHHHH
Q 002183 72 TYSFELDPFQRVSV----ACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQ-----RVIYTSPLKALSNQKYRELHQ 141 (955)
Q Consensus 72 ~~~f~l~~~Q~~ai----~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~-----~vl~l~PtkaLa~Q~~~~l~~ 141 (955)
.|||+++|.|.+.+ ..+..|.++++.||||+|||++++.|++..+. .+. +++|.++|.++..|...++++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 38999999999954 45688999999999999999999999875543 333 899999999999998888876
Q ss_pred h
Q 002183 142 E 142 (955)
Q Consensus 142 ~ 142 (955)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.40 E-value=7.8e-07 Score=96.94 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=59.8
Q ss_pred cCCCCCCHHHHHHH----HHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCC-----eEEEEccChhhHHHHHHHHHH
Q 002183 72 TYSFELDPFQRVSV----ACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQ-----RVIYTSPLKALSNQKYRELHQ 141 (955)
Q Consensus 72 ~~~f~l~~~Q~~ai----~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~-----~vl~l~PtkaLa~Q~~~~l~~ 141 (955)
.|||+++|.|.+.+ ..+..|.++++.||||+|||++++.|++..+. .+. +++|.++|.++..|...++++
T Consensus 4 ~FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 4 YFPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 38999999999954 45688999999999999999999999875543 333 899999999999998888876
Q ss_pred h
Q 002183 142 E 142 (955)
Q Consensus 142 ~ 142 (955)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 168
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.40 E-value=1.3e-06 Score=92.56 Aligned_cols=123 Identities=20% Similarity=0.258 Sum_probs=91.6
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----Ce
Q 002183 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~v 146 (955)
...|+.|++.|.-+.-.+..|+ |+...||=|||+++.++.+.....|..|=+++..--||..=+.++..+|. .+
T Consensus 72 r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv 149 (266)
T PF07517_consen 72 RTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSV 149 (266)
T ss_dssp HHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--E
T ss_pred HHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhcc
Confidence 4678899999999998888876 99999999999999888877777888899999999999988777776654 78
Q ss_pred eEEecccccCC-----CCCEEEEeHHHHH-----HHHhcCC--ccCCccceEEEEccccCC
Q 002183 147 GLMTGDVTLSP-----NASCLVMTTEILR-----GMLYRGS--EVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 147 g~~tGd~~~~~-----~~~IlV~Tpe~L~-----~~l~~~~--~~l~~l~~vIiDEaH~l~ 195 (955)
|+.+++.+... .++|+.+|...+- +.+.... ...+.+.++|+||||.+.
T Consensus 150 ~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 150 GIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 88888765432 5789999997764 2222222 225789999999999664
No 169
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.34 E-value=3.4e-06 Score=86.61 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHh-cCC-cEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecc
Q 002183 76 ELDPFQRVSVACLE-RNE-SVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD 152 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~-~g~-~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd 152 (955)
+|++-|++|+..+. ++. -.+|.+|.|+|||.+... +...+ ..+.++++++||...+....+.. +
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~~g~~v~~~apT~~Aa~~L~~~~----~-------- 67 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEAAGKRVIGLAPTNKAAKELREKT----G-------- 67 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHHTT--EEEEESSHHHHHHHHHHH----T--------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHhCCCeEEEECCcHHHHHHHHHhh----C--------
Confidence 37899999999984 343 477889999999987544 44444 45789999999988888755542 1
Q ss_pred cccCCCCCEEEEeHHHHHHHHhcCC----ccCCccceEEEEccccCCCCCChHHHHHHHHhCCC-cceEEEecc
Q 002183 153 VTLSPNASCLVMTTEILRGMLYRGS----EVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPP-AIKMVFLSA 221 (955)
Q Consensus 153 ~~~~~~~~IlV~Tpe~L~~~l~~~~----~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~-~~~~v~lSA 221 (955)
+-..|...+........ ..+...++||||||-++. ...+..++...+. +.++|++-=
T Consensus 68 --------~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvGD 129 (196)
T PF13604_consen 68 --------IEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVGD 129 (196)
T ss_dssp --------S-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE-
T ss_pred --------cchhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEECC
Confidence 22345444433222111 115566899999999886 4557777777765 677777643
No 170
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.30 E-value=0.00036 Score=78.95 Aligned_cols=292 Identities=12% Similarity=0.105 Sum_probs=166.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHHhcCC-------------ee------------------------EEecccc-------
Q 002183 119 KQRVIYTSPLKALSNQKYRELHQEFKD-------------VG------------------------LMTGDVT------- 154 (955)
Q Consensus 119 ~~~vl~l~PtkaLa~Q~~~~l~~~~~~-------------vg------------------------~~tGd~~------- 154 (955)
.++|||++|+|.-|-++.+.+.++.+. .| +..|+..
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 479999999999999988777665542 11 0112110
Q ss_pred -cC----------CCCCEEEEeHHHHHHHHhc------CCccCCccceEEEEccccCCC--CCChHHHHHHHHhCCC---
Q 002183 155 -LS----------PNASCLVMTTEILRGMLYR------GSEVLKEVAWVIFDEIHYMKD--RERGVVWEESIIFLPP--- 212 (955)
Q Consensus 155 -~~----------~~~~IlV~Tpe~L~~~l~~------~~~~l~~l~~vIiDEaH~l~d--~~rg~~~~~ii~~l~~--- 212 (955)
+. -++||||++|=-|+..+.. ..++++.+.++|+|-||.+.- |++-..+-+.+...|.
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~ 196 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSH 196 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCC
Confidence 00 1589999999888877763 457899999999999997763 2211111112222221
Q ss_pred ------------------cceEEEeccccCChHHHHHHHhhhcCC---CeEEEecCCCcccceEEEeecCCCceEEeecc
Q 002183 213 ------------------AIKMVFLSATMSNATQFAEWICHLHKQ---PCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDE 271 (955)
Q Consensus 213 ------------------~~~~v~lSAT~~n~~~~~~~l~~~~~~---~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~ 271 (955)
-.|+|++|+... .++...+.....+ .+.+.........+.. ...+..+++.-++.
T Consensus 197 ~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~--pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~--v~~~v~Q~F~r~~~ 272 (442)
T PF06862_consen 197 DTDFSRVRPWYLDGQAKYYRQTIIFSSFQT--PEINSLFNRHCQNYAGKVRLKPPYEASGVISQ--VVVQVRQVFQRFDC 272 (442)
T ss_pred CCCHHHHHHHHHcCcchheeEeEEecCCCC--HHHHHHHHhhCcCccceEEEeeccccceeeec--cccCCceEEEEecC
Confidence 259999999875 2344444432111 1111111110000111 11122344444332
Q ss_pred cchhc--hhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHH-HcCCCcEEEEEcChHHHHHHHHH
Q 002183 272 KEQFR--EDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIM-ERKFQPVIVFSFSRRECEQHAMS 348 (955)
Q Consensus 272 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~IVF~~s~~~~~~la~~ 348 (955)
..... ...|.-.. ..++-.+. ......++||++|=-.--.+-..
T Consensus 273 ~s~~~~~d~Rf~yF~---------------------------------~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~ 319 (442)
T PF06862_consen 273 SSPADDPDARFKYFT---------------------------------KKILPQLKRDSKMSGTLIFIPSYFDFVRLRNY 319 (442)
T ss_pred CCcchhhhHHHHHHH---------------------------------HHHHHHhhhccCCCcEEEEecchhhhHHHHHH
Confidence 21111 01111111 12223333 44567899999997776667777
Q ss_pred hccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccc
Q 002183 349 MSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETF 428 (955)
Q Consensus 349 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~l 428 (955)
|.+.+.. .+.+|-..++.+-...-..|..|..++|+-|+=+
T Consensus 320 lk~~~~s---------------------------------------F~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~ 360 (442)
T PF06862_consen 320 LKKENIS---------------------------------------FVQISEYTSNSDISRARSQFFHGRKPILLYTERF 360 (442)
T ss_pred HHhcCCe---------------------------------------EEEecccCCHHHHHHHHHHHHcCCceEEEEEhHH
Confidence 7643322 5677888888888888999999999999999865
Q ss_pred c--ccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhc---cCCC-CCCCCceEEEEEeCCcccHHHHHHhH
Q 002183 429 A--MGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSG---RAGR-RGKDDRGICIIMVDEQMEMNTLKDMV 495 (955)
Q Consensus 429 a--~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~G---RaGR-~G~~~~g~~ii~~~~~~~~~~~~~l~ 495 (955)
= +=..+..+..|| .|.. |..|.=|..+++ .... .+....+.|.++++.. +.-.+++++
T Consensus 361 HFfrRy~irGi~~vi----FY~~----P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~-D~~~LErIV 424 (442)
T PF06862_consen 361 HFFRRYRIRGIRHVI----FYGP----PENPQFYSELLNMLDESSGGEVDAADATVTVLYSKY-DALRLERIV 424 (442)
T ss_pred hhhhhceecCCcEEE----EECC----CCChhHHHHHHhhhcccccccccccCceEEEEecHh-HHHHHHHHh
Confidence 3 456677777777 6777 777765555443 3332 1223346666666554 444444443
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.27 E-value=6.5e-06 Score=100.34 Aligned_cols=130 Identities=16% Similarity=0.239 Sum_probs=84.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccChhhHHHHHHHHH---------HhcCC--e--eEEeccc---
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELH---------QEFKD--V--GLMTGDV--- 153 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~PtkaLa~Q~~~~l~---------~~~~~--v--g~~tGd~--- 153 (955)
.++.+.++||+|||.+|+-.|...... -.+.|+++|+.|.-..+..-+. ..+++ + ..+.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 378899999999999999988777654 3679999999988777654433 33332 2 2233221
Q ss_pred -------c----------cCC-CCCEEEEeHHHHHHHHh--c--------CC-ccCCcc----ceEEEEccccCCCCCCh
Q 002183 154 -------T----------LSP-NASCLVMTTEILRGMLY--R--------GS-EVLKEV----AWVIFDEIHYMKDRERG 200 (955)
Q Consensus 154 -------~----------~~~-~~~IlV~Tpe~L~~~l~--~--------~~-~~l~~l----~~vIiDEaH~l~d~~rg 200 (955)
+ .+. ...|+|+|.+.+.+-.. . +. ..+..+ -.||+||.|++... +
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~--~ 217 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD--N 217 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--h
Confidence 0 011 46899999998865211 1 11 111122 27999999999653 4
Q ss_pred HHHHHHHHhCCCcceEEEeccccCC
Q 002183 201 VVWEESIIFLPPAIKMVFLSATMSN 225 (955)
Q Consensus 201 ~~~~~ii~~l~~~~~~v~lSAT~~n 225 (955)
..|+.+ ..+.+.. ++.+|||.++
T Consensus 218 k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 218 KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred HHHHHH-HhcCccc-EEEEeeecCC
Confidence 467655 5555433 5669999986
No 172
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.22 E-value=6.8e-06 Score=83.75 Aligned_cols=122 Identities=20% Similarity=0.299 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC--CeEEEEccChhhHHHHHHHHHHhcCCeeEEecccc
Q 002183 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT 154 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~--~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~ 154 (955)
.++.|+.++.++.+..-+++.+|.|+|||+.+..+.+..+..+ .+++|+-|..+. ..++|.+.|+..
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~-----------~~~lGflpG~~~ 73 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA-----------GEDLGFLPGDLE 73 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T-----------T----SS-----
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC-----------ccccccCCCCHH
Confidence 6789999999999888999999999999999998888887665 589999898654 124455555432
Q ss_pred cC-------------------------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh
Q 002183 155 LS-------------------------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (955)
Q Consensus 155 ~~-------------------------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~ 209 (955)
-. .+..|-+..+.-+ ++.. ++ -.+||+|||+.+. -..+..++..
T Consensus 74 eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i-----RGrt-~~-~~~iIvDEaQN~t----~~~~k~ilTR 142 (205)
T PF02562_consen 74 EKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI-----RGRT-FD-NAFIIVDEAQNLT----PEELKMILTR 142 (205)
T ss_dssp ----TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG-----TT---B--SEEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh-----cCcc-cc-ceEEEEecccCCC----HHHHHHHHcc
Confidence 10 1233444444322 2322 22 2799999999887 5567778888
Q ss_pred CCCcceEEEec
Q 002183 210 LPPAIKMVFLS 220 (955)
Q Consensus 210 l~~~~~~v~lS 220 (955)
+..+.++|++-
T Consensus 143 ~g~~skii~~G 153 (205)
T PF02562_consen 143 IGEGSKIIITG 153 (205)
T ss_dssp B-TT-EEEEEE
T ss_pred cCCCcEEEEec
Confidence 88888888774
No 173
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.08 E-value=4.3e-05 Score=89.69 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=77.0
Q ss_pred eEeecCCCCHHHHHHHHHHHhcC----CccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCC
Q 002183 395 IAVHHSGLLPVIKELVELLFQEG----LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRR 470 (955)
Q Consensus 395 i~~~H~~l~~~~R~~v~~~F~~g----~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~ 470 (955)
..-+.|......|+.+...|.+- ..-.||+|-+.+.|||+-+.+-|| -||+ .++|.-=+|-+=|+-|.
T Consensus 1191 yyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVI----IfDa----sWNPSyDtQSIFRvyRf 1262 (1567)
T KOG1015|consen 1191 YYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVI----IFDA----SWNPSYDTQSIFRVYRF 1262 (1567)
T ss_pred eEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEE----EEec----ccCCccchHHHHHHHhh
Confidence 44567999999999999999853 234799999999999999999888 6788 78888889999999999
Q ss_pred CCCCceEEEEEeCC-cccHHHHHHhHhC
Q 002183 471 GKDDRGICIIMVDE-QMEMNTLKDMVLG 497 (955)
Q Consensus 471 G~~~~g~~ii~~~~-~~~~~~~~~l~~~ 497 (955)
|+....++|-+... .++...+++-+..
T Consensus 1263 GQtKPvyiYRfiAqGTmEeKIYkRQVTK 1290 (1567)
T KOG1015|consen 1263 GQTKPVYIYRFIAQGTMEEKIYKRQVTK 1290 (1567)
T ss_pred cCcCceeehhhhhcccHHHHHHHHHHhH
Confidence 99888888877644 4566666655443
No 174
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.03 E-value=6.4e-05 Score=80.03 Aligned_cols=147 Identities=23% Similarity=0.232 Sum_probs=99.5
Q ss_pred CCCHHHHHHHHHHh----------cCCcEEEEcCCCCchHHHHHHHHHHHHhcC-CeEEEEccChhhHHHHHHHHHHhcC
Q 002183 76 ELDPFQRVSVACLE----------RNESVLVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~----------~g~~vlv~apTGsGKTl~~~~~i~~~l~~~-~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
.|+.-|.+++-... ...-.++-..||.||.-...-.|+....+| .|.|+++.+-.|-.+..++|+....
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 38899999985541 245688899999999976655566665555 4699999999999999999999876
Q ss_pred C---eeE----EecccccCCCCCEEEEeHHHHHHHHhcC---CccC--------Cc-cceEEEEccccCCCCCCh-----
Q 002183 145 D---VGL----MTGDVTLSPNASCLVMTTEILRGMLYRG---SEVL--------KE-VAWVIFDEIHYMKDRERG----- 200 (955)
Q Consensus 145 ~---vg~----~tGd~~~~~~~~IlV~Tpe~L~~~l~~~---~~~l--------~~-l~~vIiDEaH~l~d~~rg----- 200 (955)
. +.. -.|+. ..-...|+++|+..|...-..+ ...+ .+ =.+|||||||...+..-+
T Consensus 117 ~~i~v~~l~~~~~~~~-~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~s 195 (303)
T PF13872_consen 117 DNIPVHPLNKFKYGDI-IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPS 195 (303)
T ss_pred CcccceechhhccCcC-CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCcccc
Confidence 2 111 11221 2235579999999988764321 1111 11 258999999999865432
Q ss_pred ---HHHHHHHHhCCCcceEEEeccccC
Q 002183 201 ---VVWEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 201 ---~~~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
....++-..|| +.+++..|||-.
T Consensus 196 k~g~avl~LQ~~LP-~ARvvY~SATga 221 (303)
T PF13872_consen 196 KTGIAVLELQNRLP-NARVVYASATGA 221 (303)
T ss_pred HHHHHHHHHHHhCC-CCcEEEeccccc
Confidence 22233334465 567999999964
No 175
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.99 E-value=1.6e-05 Score=90.24 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=59.3
Q ss_pred cCCCCCCHHHHHHHHHHhcC-CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHH
Q 002183 72 TYSFELDPFQRVSVACLERN-ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g-~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
.+++.+++-|++|+....+. .-.++.+|+|+|||.+-..-|.+++..+.++|+++||..-+..+.+++.
T Consensus 181 ~~~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cCCccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 34556999999999998666 4567899999999999989999999999999999999988888777543
No 176
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.95 E-value=0.0012 Score=81.08 Aligned_cols=80 Identities=9% Similarity=-0.027 Sum_probs=60.6
Q ss_pred CCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccCCh----HHHHHHH
Q 002183 158 NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNA----TQFAEWI 233 (955)
Q Consensus 158 ~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~----~~~~~~l 233 (955)
...|+++||.+|.+-+..+...+..+..+||||||++.+..-..-+-+++..-.+..-+.+|||.+..- ..+...+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vm 86 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKM 86 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHH
Confidence 467999999999988888888899999999999999986544444555555556667799999998642 3444444
Q ss_pred hhhc
Q 002183 234 CHLH 237 (955)
Q Consensus 234 ~~~~ 237 (955)
..+.
T Consensus 87 k~L~ 90 (814)
T TIGR00596 87 RNLF 90 (814)
T ss_pred HHhC
Confidence 4443
No 177
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.94 E-value=2.8e-05 Score=87.72 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=67.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHH--HhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMA--FRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~--l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (955)
-++|.+..|||||+++...+... ...+.+++|+++..+|.+...+.+.... ........+..+..+.
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~-----------~~~~~~~~~~~~~~~i 71 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY-----------NPKLKKSDFRKPTSFI 71 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc-----------ccchhhhhhhhhHHHH
Confidence 47899999999999987766666 5678899999999999999888887754 0111233344555554
Q ss_pred HHHhcCCccCCccceEEEEccccCCC
Q 002183 171 GMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 171 ~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
+...........+++||+||||++.+
T Consensus 72 ~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 72 NNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhcccccccCCcCCEEEEehhHhhhh
Confidence 43332223466899999999999987
No 178
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.92 E-value=0.0001 Score=90.40 Aligned_cols=128 Identities=16% Similarity=0.109 Sum_probs=85.6
Q ss_pred hhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cC--CeEEEEccChhhHHHHHHHHHHhcCC
Q 002183 69 MAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DK--QRVIYTSPLKALSNQKYRELHQEFKD 145 (955)
Q Consensus 69 ~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~--~~vl~l~PtkaLa~Q~~~~l~~~~~~ 145 (955)
.....++.+++.|++|+..+..++-+++.+++|+|||.+.- +++..+. .+ .++++++||---+... .+..+
T Consensus 316 ~~~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~~~~~~v~l~ApTg~AA~~L----~e~~g- 389 (720)
T TIGR01448 316 VEKKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEELGGLLPVGLAAPTGRAAKRL----GEVTG- 389 (720)
T ss_pred HHHhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHHcCCCceEEEEeCchHHHHHH----HHhcC-
Confidence 34557889999999999999888899999999999998764 3333333 34 6788999997777643 22211
Q ss_pred eeEEecccccCCCCCEEEEeHHHHHHHHhcC-----CccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEec
Q 002183 146 VGLMTGDVTLSPNASCLVMTTEILRGMLYRG-----SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 146 vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~-----~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lS 220 (955)
. --.|..++....... .......++||+|||+++. ...+..++..++.+.++|++-
T Consensus 390 ------~---------~a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~rlilvG 450 (720)
T TIGR01448 390 ------L---------TASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHARLLLVG 450 (720)
T ss_pred ------C---------ccccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCEEEEEC
Confidence 0 012333333221110 0112357899999999886 345667777788888888875
Q ss_pred c
Q 002183 221 A 221 (955)
Q Consensus 221 A 221 (955)
=
T Consensus 451 D 451 (720)
T TIGR01448 451 D 451 (720)
T ss_pred c
Confidence 3
No 179
>PRK10536 hypothetical protein; Provisional
Probab=97.85 E-value=0.00015 Score=75.95 Aligned_cols=133 Identities=17% Similarity=0.227 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC--CeEEEEccChhhHH----------HHHHHHHH-hc
Q 002183 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSN----------QKYRELHQ-EF 143 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~--~~vl~l~PtkaLa~----------Q~~~~l~~-~~ 143 (955)
.+..|...+.++.++..+++.+|+|+|||+.+.......+.++ .+++++-|+..... +++.-|-. .+
T Consensus 60 ~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~ 139 (262)
T PRK10536 60 RNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVY 139 (262)
T ss_pred CCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999887777665333 45677777765322 11111111 01
Q ss_pred CCeeEEeccccc----C-CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEE
Q 002183 144 KDVGLMTGDVTL----S-PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVF 218 (955)
Q Consensus 144 ~~vg~~tGd~~~----~-~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~ 218 (955)
.....+.|...+ . ....|-|....-+ ++.. + +-++||+|||+++. -.....++..++.+.++|+
T Consensus 140 D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ym-----RGrt-l-~~~~vIvDEaqn~~----~~~~k~~ltR~g~~sk~v~ 208 (262)
T PRK10536 140 DVLVRRLGASFMQYCLRPEIGKVEIAPFAYM-----RGRT-F-ENAVVILDEAQNVT----AAQMKMFLTRLGENVTVIV 208 (262)
T ss_pred HHHHHHhChHHHHHHHHhccCcEEEecHHHh-----cCCc-c-cCCEEEEechhcCC----HHHHHHHHhhcCCCCEEEE
Confidence 111111121111 1 1234445544433 2332 2 23799999999886 3556677778888887776
Q ss_pred ec
Q 002183 219 LS 220 (955)
Q Consensus 219 lS 220 (955)
+-
T Consensus 209 ~G 210 (262)
T PRK10536 209 NG 210 (262)
T ss_pred eC
Confidence 53
No 180
>PF13245 AAA_19: Part of AAA domain
Probab=97.83 E-value=5.8e-05 Score=64.31 Aligned_cols=56 Identities=23% Similarity=0.305 Sum_probs=43.4
Q ss_pred HHH-HHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc----CCeEEEEccChhhHHHHHHHH
Q 002183 84 SVA-CLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 84 ai~-~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~----~~~vl~l~PtkaLa~Q~~~~l 139 (955)
|+. ++..+.-++|.||+|||||.+..-.+...+.. +.++++++|++..++++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 444 44424445569999999998777777666654 789999999999999988887
No 181
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.0009 Score=80.35 Aligned_cols=123 Identities=16% Similarity=0.167 Sum_probs=85.1
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----Ce
Q 002183 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~v 146 (955)
...|+.+..+|.-+--.+..| -+.-+.||=|||+++.+|+...-..|..|-+++..--||.--...+...+. .|
T Consensus 75 Rvlg~~~~dVQliG~i~lh~g--~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsv 152 (822)
T COG0653 75 RVLGMRHFDVQLLGGIVLHLG--DIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSV 152 (822)
T ss_pred HhcCCChhhHHHhhhhhhcCC--ceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCce
Confidence 345666777776655555555 588999999999999999877766777787777777787765555555544 67
Q ss_pred eEEecccccCC-----CCCEEEEeHHHH-----H-HHHhcCC-ccCCccceEEEEccccCC
Q 002183 147 GLMTGDVTLSP-----NASCLVMTTEIL-----R-GMLYRGS-EVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 147 g~~tGd~~~~~-----~~~IlV~Tpe~L-----~-~~l~~~~-~~l~~l~~vIiDEaH~l~ 195 (955)
|+...+.+... .++|..+|-..| + +|.+... ...+.+.+.|+||++-++
T Consensus 153 G~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 153 GVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 77666654332 579999997654 2 3443322 334568899999998764
No 182
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.81 E-value=4.2e-05 Score=91.42 Aligned_cols=142 Identities=18% Similarity=0.228 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHH----hcCCcEEEEcCCCCchHHH--HHHHHHHHHh-cCCeEEEEccChhhHHHHHHHHHHhcCCeeE
Q 002183 76 ELDPFQRVSVACL----ERNESVLVSAHTSAGKTAV--AEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFKDVGL 148 (955)
Q Consensus 76 ~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~--~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~ 148 (955)
.|+.||+..++++ .++-|.|++...|-|||+. .++|-+.+-. +-+.-||++||-.+-| |.-+|+.+.+..-+
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn-WEMElKRwcPglKI 693 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKRWCPGLKI 693 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhh-hhHHHhhhCCcceE
Confidence 4889999999886 6788999999999999974 3344333322 2356789999976665 67889999885544
Q ss_pred --Eeccccc---------CCC-CCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceE
Q 002183 149 --MTGDVTL---------SPN-ASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKM 216 (955)
Q Consensus 149 --~tGd~~~---------~~~-~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~ 216 (955)
+.|...- .++ .+|.|+++..+..-+.. ..-.+|.|+|+||||++.++ ....|..++..- .-+.
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaqnIKnf-ksqrWQAllnfn--sqrR 768 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQNIKNF-KSQRWQALLNFN--SQRR 768 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH--HHhhccceeehhhhhhhcch-hHHHHHHHhccc--hhhe
Confidence 4454321 223 47778888766543322 12357899999999999885 467788776543 2456
Q ss_pred EEecccc
Q 002183 217 VFLSATM 223 (955)
Q Consensus 217 v~lSAT~ 223 (955)
++|+.|+
T Consensus 769 LLLtgTP 775 (1958)
T KOG0391|consen 769 LLLTGTP 775 (1958)
T ss_pred eeecCCc
Confidence 7888885
No 183
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.78 E-value=0.00021 Score=85.33 Aligned_cols=143 Identities=16% Similarity=0.190 Sum_probs=90.5
Q ss_pred hcCCCC--CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHH--HHHHhc--CCeEEEEccChhhHHHHHHHHHHhcC
Q 002183 71 KTYSFE--LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAI--AMAFRD--KQRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 71 ~~~~f~--l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i--~~~l~~--~~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
..|++. ..++|+.|+.....+.-.++++++|+|||.+....+ +..+.. ..++++++||.--+....+.+.....
T Consensus 145 ~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~ 224 (615)
T PRK10875 145 ALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR 224 (615)
T ss_pred HhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh
Confidence 344443 358999999998888899999999999998643332 222222 35788999998888777766654433
Q ss_pred CeeEEecccccCCCCCEEEEeHHHHHHHHhcC------CccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEE
Q 002183 145 DVGLMTGDVTLSPNASCLVMTTEILRGMLYRG------SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVF 218 (955)
Q Consensus 145 ~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~------~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~ 218 (955)
..++. .+ .......-..|..+|....... ....-.+++||+||+-++. -..+..++..++++.++|+
T Consensus 225 ~~~~~-~~--~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~rlIl 297 (615)
T PRK10875 225 QLPLT-DE--QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHARVIF 297 (615)
T ss_pred ccccc-hh--hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCCEEEE
Confidence 32211 00 0111112244555554332111 1122356899999999875 4566778888898888888
Q ss_pred ec
Q 002183 219 LS 220 (955)
Q Consensus 219 lS 220 (955)
+-
T Consensus 298 vG 299 (615)
T PRK10875 298 LG 299 (615)
T ss_pred ec
Confidence 74
No 184
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.78 E-value=0.00021 Score=85.10 Aligned_cols=136 Identities=18% Similarity=0.231 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHH--HHHHhc---CCeEEEEccChhhHHHHHHHHHHhcCCeeEEecc
Q 002183 78 DPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAI--AMAFRD---KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD 152 (955)
Q Consensus 78 ~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i--~~~l~~---~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd 152 (955)
.++|+.|+.....+.-.++++++|+|||.+....+ +..... +.++++++||---+....+.+.........- .
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-~- 224 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-E- 224 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc-h-
Confidence 37999999999999999999999999998654333 222222 2579999999877777666665543322210 0
Q ss_pred cccCCCCCEEEEeHHHHHHHHhc------CCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEec
Q 002183 153 VTLSPNASCLVMTTEILRGMLYR------GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 153 ~~~~~~~~IlV~Tpe~L~~~l~~------~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lS 220 (955)
.......+-..|..++...... .......+++||+|||-++. ...+..++..++++.++|++-
T Consensus 225 -~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~rlIlvG 293 (586)
T TIGR01447 225 -ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNTKLILLG 293 (586)
T ss_pred -hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCCEEEEEC
Confidence 0011112224455555432211 01122367999999999886 456777888889888888875
No 185
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.002 Score=72.09 Aligned_cols=128 Identities=18% Similarity=0.211 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcC-CCCchH--HHHHHHHHHHHh-------------------------------cCCe
Q 002183 76 ELDPFQRVSVACLERNESVLVSAH-TSAGKT--AVAEYAIAMAFR-------------------------------DKQR 121 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~ap-TGsGKT--l~~~~~i~~~l~-------------------------------~~~~ 121 (955)
++++.|.+.+..+.+-+|++..-. -+.|+- -+|.+-+++++- ..++
T Consensus 216 pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpk 295 (698)
T KOG2340|consen 216 PLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPK 295 (698)
T ss_pred cchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCce
Confidence 589999999999999999886322 245663 344444444430 1258
Q ss_pred EEEEccChhhHHHHHHHHHHh-cCC------e-------eEEeccccc--------------------------------
Q 002183 122 VIYTSPLKALSNQKYRELHQE-FKD------V-------GLMTGDVTL-------------------------------- 155 (955)
Q Consensus 122 vl~l~PtkaLa~Q~~~~l~~~-~~~------v-------g~~tGd~~~-------------------------------- 155 (955)
||+++|+|+-|-.+...+..+ +|. | |-..|++..
T Consensus 296 VLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkK 375 (698)
T KOG2340|consen 296 VLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKK 375 (698)
T ss_pred EEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHH
Confidence 999999999999999988887 441 1 112221110
Q ss_pred -------CCCCCEEEEeHHHHHHHHhc------CCccCCccceEEEEccccCCCCCChHHHHHHH
Q 002183 156 -------SPNASCLVMTTEILRGMLYR------GSEVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (955)
Q Consensus 156 -------~~~~~IlV~Tpe~L~~~l~~------~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii 207 (955)
-..++|+||+|=-|+-.+.+ ..++++.+.++|||-||-+.. ..|+.++
T Consensus 376 tikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~----QNwEhl~ 436 (698)
T KOG2340|consen 376 TIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM----QNWEHLL 436 (698)
T ss_pred HHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH----hhHHHHH
Confidence 01479999999888866652 236788999999999998763 3366554
No 186
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.62 E-value=0.0006 Score=83.99 Aligned_cols=124 Identities=16% Similarity=0.111 Sum_probs=80.4
Q ss_pred CCCCCCHHHHHHHHHHhc-CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEec
Q 002183 73 YSFELDPFQRVSVACLER-NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~-g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tG 151 (955)
.+|.|++-|++|+..+.. ++-+++.+++|+|||.+.-..+...-..|.++++++||---+.... +..+ +
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~----~~~g---~--- 418 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ----AESG---I--- 418 (744)
T ss_pred ccCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH----hccC---C---
Confidence 467899999999999866 4667899999999998754433333345889999999966555432 2111 0
Q ss_pred ccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh-CCCcceEEEec
Q 002183 152 DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF-LPPAIKMVFLS 220 (955)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~-l~~~~~~v~lS 220 (955)
--.|..++.....++...+...++||+||+-++... .+..++.. .+.+.++|++-
T Consensus 419 ----------~a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 419 ----------ESRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred ----------ceeeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCCEEEEEC
Confidence 112444442222233344667899999999988743 34455543 33567777765
No 187
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.59 E-value=0.00014 Score=76.93 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHhcCCc-EEEEcCCCCchHHHHHHHHHHH--------HhcCCeEEEEccChhhHHHHHHHHHH
Q 002183 77 LDPFQRVSVACLERNES-VLVSAHTSAGKTAVAEYAIAMA--------FRDKQRVIYTSPLKALSNQKYRELHQ 141 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~-vlv~apTGsGKTl~~~~~i~~~--------l~~~~~vl~l~PtkaLa~Q~~~~l~~ 141 (955)
|++.|.+|+..+..... .+|.||+|+|||.+....+... ...+.++++++|+.+-+++..+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 78999999999988888 9999999999997655555554 35688999999999999999999988
No 188
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.56 E-value=0.00049 Score=70.84 Aligned_cols=126 Identities=20% Similarity=0.209 Sum_probs=86.1
Q ss_pred hcCCCCCCHHHHHHHHHHh---cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCC--
Q 002183 71 KTYSFELDPFQRVSVACLE---RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD-- 145 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~---~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~-- 145 (955)
-..++-+++.|.+....+. .|++.+.+.-+|.|||.|..=.++..+.+|.+.+.++=.++|..|.+..+...++.
T Consensus 18 ~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 18 IESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred HHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHHHHHHh
Confidence 3456679999999988874 46789999999999999875555566667766554444479999999999998772
Q ss_pred ---eeEEe--ccccc---------------CCCCCEEEEeHHHHHHHHhcC-------C-----------ccCCccceEE
Q 002183 146 ---VGLMT--GDVTL---------------SPNASCLVMTTEILRGMLYRG-------S-----------EVLKEVAWVI 187 (955)
Q Consensus 146 ---vg~~t--Gd~~~---------------~~~~~IlV~Tpe~L~~~l~~~-------~-----------~~l~~l~~vI 187 (955)
+-.+. -+... .....|+++|||.+.++...+ . .++++-.-=|
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdi 177 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDI 177 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeE
Confidence 22111 11111 124679999999887643211 1 1234455679
Q ss_pred EEccccCCC
Q 002183 188 FDEIHYMKD 196 (955)
Q Consensus 188 iDEaH~l~d 196 (955)
+||+|.+..
T Consensus 178 lDEsDe~L~ 186 (229)
T PF12340_consen 178 LDESDEILS 186 (229)
T ss_pred eECchhccC
Confidence 999997765
No 189
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.52 E-value=0.0009 Score=83.54 Aligned_cols=126 Identities=15% Similarity=0.102 Sum_probs=82.9
Q ss_pred cCCCCCCHHHHHHHHHHhcCC-cEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHHHHHhcCCeeEE
Q 002183 72 TYSFELDPFQRVSVACLERNE-SVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFKDVGLM 149 (955)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g~-~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~ 149 (955)
..+|.|++-|++|+..+..+. -++|.++.|+|||.+. -++...+. .|.+|+.++||---+... .+ ..|+
T Consensus 342 ~~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~G~~V~~~ApTGkAA~~L----~e---~tGi- 412 (988)
T PRK13889 342 ARGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEAAGYEVRGAALSGIAAENL----EG---GSGI- 412 (988)
T ss_pred hcCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEecCcHHHHHHH----hh---ccCc-
Confidence 357889999999999987754 4788999999999873 34444443 588999999997555433 22 1111
Q ss_pred ecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC-CCcceEEEeccc
Q 002183 150 TGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLSAT 222 (955)
Q Consensus 150 tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l-~~~~~~v~lSAT 222 (955)
--.|...+..-...+...+...++|||||+-++.. ..+..++... +.+.++|++-=+
T Consensus 413 ------------~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 413 ------------ASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred ------------chhhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhhhCCCEEEEECCH
Confidence 11244444322223344466778999999998863 3456666543 557788877543
No 190
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.0044 Score=70.47 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=77.6
Q ss_pred EcCCCCchHHHHHHHHHHHHhcCC-eEEEEccChhhHHHHHHHHHH------hcCCeeEEecccc-----------cCCC
Q 002183 97 SAHTSAGKTAVAEYAIAMAFRDKQ-RVIYTSPLKALSNQKYRELHQ------EFKDVGLMTGDVT-----------LSPN 158 (955)
Q Consensus 97 ~apTGsGKTl~~~~~i~~~l~~~~-~vl~l~PtkaLa~Q~~~~l~~------~~~~vg~~tGd~~-----------~~~~ 158 (955)
.+.||||||++..-.|+.+...|- ..|+.+..-....-....|.. +|. -.+..+|.. -+..
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~-e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFS-ENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhh-hhhhcCCceeeeeeecccCccCCc
Confidence 478999999998888888887764 466666654333332222211 111 112222221 2345
Q ss_pred CCEEEEeHHHHHHHHhcCC------ccCCccce-EEEEccccCCCCCC---------hHHHHHHHHh-C--CCcceEEEe
Q 002183 159 ASCLVMTTEILRGMLYRGS------EVLKEVAW-VIFDEIHYMKDRER---------GVVWEESIIF-L--PPAIKMVFL 219 (955)
Q Consensus 159 ~~IlV~Tpe~L~~~l~~~~------~~l~~l~~-vIiDEaH~l~d~~r---------g~~~~~ii~~-l--~~~~~~v~l 219 (955)
..|.++|.+.|.+.+-+.. ..+.+..+ ++-||||++....- -..|+..+.. + .++--++.+
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~lef 161 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLEF 161 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeehh
Confidence 6799999999988775543 22444454 46799999974322 2346665543 2 345557888
Q ss_pred ccccCChH
Q 002183 220 SATMSNAT 227 (955)
Q Consensus 220 SAT~~n~~ 227 (955)
|||.+...
T Consensus 162 ~at~~k~k 169 (812)
T COG3421 162 SATIPKEK 169 (812)
T ss_pred hhcCCccc
Confidence 99998443
No 191
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.42 E-value=0.001 Score=66.42 Aligned_cols=120 Identities=22% Similarity=0.243 Sum_probs=75.2
Q ss_pred HHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCH
Q 002183 325 MERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLP 404 (955)
Q Consensus 325 ~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~ 404 (955)
.+...+.++||++|.+..+.+...+...... .++.++..+ .
T Consensus 5 ~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-------------------------------------~~~~v~~q~--~ 45 (167)
T PF13307_consen 5 ISAVPGGVLVFFPSYRRLEKVYERLKERLEE-------------------------------------KGIPVFVQG--S 45 (167)
T ss_dssp HHCCSSEEEEEESSHHHHHHHHTT-TSS-E--------------------------------------ETSCEEEST--C
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhhccc-------------------------------------ccceeeecC--c
Confidence 3444588999999999999999888763211 123344432 5
Q ss_pred HHHHHHHHHHhcCCccEEEEcc--cccccCCCCC--cE-EEEecceeccCCC------------------C----cccCH
Q 002183 405 VIKELVELLFQEGLVKALFATE--TFAMGLNMPA--KT-VVFTAVKKWDGDS------------------H----RYIGS 457 (955)
Q Consensus 405 ~~R~~v~~~F~~g~i~VLvaT~--~la~Gidip~--~~-vVi~~~~~~d~~~------------------~----~~~s~ 457 (955)
..+..+++.|+++.-.||+|+. .+++|||+|+ .+ +||... +|-... + .+...
T Consensus 46 ~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~gl-Pfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~ 124 (167)
T PF13307_consen 46 KSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGL-PFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAI 124 (167)
T ss_dssp CHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES------TTCHHHHHHHHHHHHCCTTCHHHHTHHHHH
T ss_pred chHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCC-CCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHH
Confidence 6778888999999999999999 9999999995 33 444433 332210 0 01123
Q ss_pred HHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 458 GEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 458 ~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
....|.+||+-|...| .|.++++-..-
T Consensus 125 ~~l~Qa~GR~iR~~~D-~g~i~llD~R~ 151 (167)
T PF13307_consen 125 RKLKQAIGRLIRSEDD-YGVIILLDSRF 151 (167)
T ss_dssp HHHHHHHHCC--STT--EEEEEEESGGG
T ss_pred HHHhhhcCcceeccCC-cEEEEEEcCcc
Confidence 4577999999998865 78888775443
No 192
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.36 E-value=0.00074 Score=80.02 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=56.1
Q ss_pred hhhcCCCCCCHHHHHHHH----HHhcCCcEEEEcCCCCchHHHHHHHHH---HHHh-----------c------------
Q 002183 69 MAKTYSFELDPFQRVSVA----CLERNESVLVSAHTSAGKTAVAEYAIA---MAFR-----------D------------ 118 (955)
Q Consensus 69 ~~~~~~f~l~~~Q~~ai~----~l~~g~~vlv~apTGsGKTl~~~~~i~---~~l~-----------~------------ 118 (955)
..-.|||+|++.|..-+. ++.+..+.++-.|||+|||+..+-..+ +.+. .
T Consensus 14 v~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~ 93 (945)
T KOG1132|consen 14 VPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSG 93 (945)
T ss_pred ceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCC
Confidence 345689999999987654 457788999999999999986554332 2221 0
Q ss_pred ----------------CCeEEEEccChhhHHHHHHHHHHhc
Q 002183 119 ----------------KQRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 119 ----------------~~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
-++++|-+-|..=..|+.++++...
T Consensus 94 g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 94 GEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred CCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 1368888889888999999998753
No 193
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.33 E-value=0.00045 Score=65.83 Aligned_cols=117 Identities=16% Similarity=0.135 Sum_probs=59.4
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhc-----CCeE-EEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEE
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRD-----KQRV-IYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLV 163 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~-----~~~v-l~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV 163 (955)
++..++|.||+|+|||.+........... ...+ .+.+|...-....+..+.+.++... .. -
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~--------~~-----~ 69 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL--------KS-----R 69 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS--------SS-----T
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc--------cc-----c
Confidence 45678999999999999877665554431 3344 4444544434555555555544110 00 1
Q ss_pred EeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEecccc
Q 002183 164 MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATM 223 (955)
Q Consensus 164 ~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~ 223 (955)
.|+..+.+.+...-.. ....+||+||+|++. ....++.+........-.+.+++|.
T Consensus 70 ~~~~~l~~~~~~~l~~-~~~~~lviDe~~~l~---~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 70 QTSDELRSLLIDALDR-RRVVLLVIDEADHLF---SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp S-HHHHHHHHHHHHHH-CTEEEEEEETTHHHH---THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHh-cCCeEEEEeChHhcC---CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 2444444433321111 112699999999984 1555665555444333344455554
No 194
>PRK06526 transposase; Provisional
Probab=97.32 E-value=0.0014 Score=69.91 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=63.7
Q ss_pred HHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEe
Q 002183 86 ACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMT 165 (955)
Q Consensus 86 ~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~T 165 (955)
..+..+.++++.||+|+|||..+......+...|.+|+|+... .|.++. ..... ..+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~-~l~~~l----~~~~~------------------~~~ 149 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAA-QWVARL----AAAHH------------------AGR 149 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHH-HHHHHH----HHHHh------------------cCc
Confidence 4457788999999999999998876666666778888775443 344443 22100 012
Q ss_pred HHHHHHHHhcCCccCCccceEEEEccccCCCCCCh-HHHHHHHHhCCCcceEEEeccccC
Q 002183 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG-VVWEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg-~~~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
...... .+.+.++|||||+|+....... ..+..++...-.+..+|+.|...+
T Consensus 150 ~~~~l~-------~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~ 202 (254)
T PRK06526 150 LQAELV-------KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPF 202 (254)
T ss_pred HHHHHH-------HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCH
Confidence 222111 1346789999999987532212 123333332222345777776653
No 195
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.29 E-value=0.0016 Score=74.58 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=61.9
Q ss_pred CCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHHHHHhcCCe
Q 002183 73 YSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFKDV 146 (955)
Q Consensus 73 ~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~~~~~~v 146 (955)
.++. |+.-|..|+.+.++..-.|+++|+|+|||++..--+++..+ .+.+||+++|..--++|..+.+.+..-+|
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKV 481 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKV 481 (935)
T ss_pred CCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceE
Confidence 4555 99999999999999999999999999999987655555443 47899999999999999999998865433
No 196
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.27 E-value=0.0033 Score=79.12 Aligned_cols=126 Identities=14% Similarity=0.068 Sum_probs=83.6
Q ss_pred CCCCCCHHHHHHHHHHh-cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEec
Q 002183 73 YSFELDPFQRVSVACLE-RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~-~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tG 151 (955)
.+|.|++-|++|+..+. .++-++|+++.|+|||.+.-......-..|.+|+-++||---+... .+..+
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L----~e~~G------- 446 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGL----EKEAG------- 446 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHH----HHhhC-------
Confidence 46889999999999874 4566889999999999876543333334688999999996655443 22211
Q ss_pred ccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCC-CcceEEEeccc
Q 002183 152 DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP-PAIKMVFLSAT 222 (955)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~-~~~~~v~lSAT 222 (955)
|--.|...+.--...+...+..-++|||||+.++. ...+..++...+ .+.++|++-=+
T Consensus 447 ---------i~a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 447 ---------IQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred ---------CCeeeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhcCCEEEEECCH
Confidence 11234444321112233446667899999999886 445666776664 56788877543
No 197
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.25 E-value=0.0025 Score=61.38 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=28.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccCh
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Ptk 129 (955)
+..+++.||+|+|||..+..........+..++++....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 678999999999999876655544444456666665543
No 198
>PRK08181 transposase; Validated
Probab=97.20 E-value=0.0044 Score=66.60 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=69.4
Q ss_pred CCHHHHHHHH----HHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecc
Q 002183 77 LDPFQRVSVA----CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD 152 (955)
Q Consensus 77 l~~~Q~~ai~----~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd 152 (955)
+++.|..++. .+..++++++.||+|+|||..+......+...|.+|+|+. ...|.++......+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-~~~L~~~l~~a~~~----------- 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-TTDLVQKLQVARRE----------- 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-HHHHHHHHHHHHhC-----------
Confidence 4677777773 3568899999999999999877655555566777787765 34455544221100
Q ss_pred cccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCCh-HHHHHHHHhCCCcceEEEecccc
Q 002183 153 VTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG-VVWEESIIFLPPAIKMVFLSATM 223 (955)
Q Consensus 153 ~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg-~~~~~ii~~l~~~~~~v~lSAT~ 223 (955)
.+.+.+.. .+.+.+++||||+++......+ ..+.+++...-....+|..|-..
T Consensus 156 -----------~~~~~~l~-------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 156 -----------LQLESAIA-------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred -----------CcHHHHHH-------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 12222222 2456789999999987643222 12333443322234555555443
No 199
>PRK04296 thymidine kinase; Provisional
Probab=97.14 E-value=0.00077 Score=68.89 Aligned_cols=87 Identities=11% Similarity=0.148 Sum_probs=52.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccC---hhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL---KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTE 167 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Pt---kaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe 167 (955)
|.-.++.+|+|+|||..+.-.+......+.+++|+.|. +....+ + ....| ..+ .+ +.+..++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~----i---~~~lg-----~~~--~~-~~~~~~~ 66 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGK----V---VSRIG-----LSR--EA-IPVSSDT 66 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCc----E---ecCCC-----Ccc--cc-eEeCChH
Confidence 34578899999999988877777777788899988763 211111 1 11111 111 11 2234444
Q ss_pred HHHHHHhcCCccCCccceEEEEccccCC
Q 002183 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
.+...+.. .-.++++||+||+|.+.
T Consensus 67 ~~~~~~~~---~~~~~dvviIDEaq~l~ 91 (190)
T PRK04296 67 DIFELIEE---EGEKIDCVLIDEAQFLD 91 (190)
T ss_pred HHHHHHHh---hCCCCCEEEEEccccCC
Confidence 44444433 23468899999999774
No 200
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.14 E-value=0.0022 Score=69.15 Aligned_cols=138 Identities=21% Similarity=0.263 Sum_probs=89.3
Q ss_pred hhhhcCCCC-CCHHHHHHHHHHhcCCc--EEEEcCCCCchHHHHHHHHHHHH---hcCCeEEEEccChhhHHHHHHHHHH
Q 002183 68 EMAKTYSFE-LDPFQRVSVACLERNES--VLVSAHTSAGKTAVAEYAIAMAF---RDKQRVIYTSPLKALSNQKYRELHQ 141 (955)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~~--vlv~apTGsGKTl~~~~~i~~~l---~~~~~vl~l~PtkaLa~Q~~~~l~~ 141 (955)
...+.||.. .+..|.-|++.++...- |.+.++.|+|||+.|+.|.+... +.-.++|++=|+..+-.
T Consensus 219 ~~~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~-------- 290 (436)
T COG1875 219 EDQEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE-------- 290 (436)
T ss_pred CchhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc--------
Confidence 444678888 57888999999877643 66789999999999887765554 23568999999977653
Q ss_pred hcCCeeEEeccccc--CC-------C----CCEEEEeHHHHHHHHhcCCccCCc----------cceEEEEccccCCCCC
Q 002183 142 EFKDVGLMTGDVTL--SP-------N----ASCLVMTTEILRGMLYRGSEVLKE----------VAWVIFDEIHYMKDRE 198 (955)
Q Consensus 142 ~~~~vg~~tGd~~~--~~-------~----~~IlV~Tpe~L~~~l~~~~~~l~~----------l~~vIiDEaH~l~d~~ 198 (955)
++|.+-|.-.- .| + .+.-=++.+.+..++.++...+.. =.+||+|||+.+.
T Consensus 291 ---dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT--- 364 (436)
T COG1875 291 ---DIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT--- 364 (436)
T ss_pred ---ccCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC---
Confidence 34444443210 00 0 001112345555555444322111 2589999999986
Q ss_pred ChHHHHHHHHhCCCcceEEEec
Q 002183 199 RGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 199 rg~~~~~ii~~l~~~~~~v~lS 220 (955)
...+.-++....++.++|++.
T Consensus 365 -pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 -PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred -HHHHHHHHHhccCCCEEEEcC
Confidence 455777788888888888764
No 201
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.04 E-value=0.0014 Score=72.78 Aligned_cols=114 Identities=19% Similarity=0.166 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC----CeEEEEccChhhHHHHHHHHHHhcCCeeEEecc
Q 002183 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK----QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD 152 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~----~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd 152 (955)
|++-|.+++.. ...+++|.|..|||||.+...-++..+..+ .+++++++|++.+.+...++...++..+...-+
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~~ 78 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESSD 78 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCTT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccccc
Confidence 57889999998 667899999999999999888777777654 589999999999999999998865421110000
Q ss_pred c-----ccCCCCCEEEEeHHHHHHHHhcCCccC--CccceEEEEccc
Q 002183 153 V-----TLSPNASCLVMTTEILRGMLYRGSEVL--KEVAWVIFDEIH 192 (955)
Q Consensus 153 ~-----~~~~~~~IlV~Tpe~L~~~l~~~~~~l--~~l~~vIiDEaH 192 (955)
. .......+.|+|-..+...+.+..... -.-.+-|+|+..
T Consensus 79 ~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 79 NERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0 001135678999887765333211111 122456666665
No 202
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.04 E-value=0.0025 Score=77.13 Aligned_cols=67 Identities=19% Similarity=0.198 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHhcC-CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHh
Q 002183 76 ELDPFQRVSVACLERN-ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g-~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
.+++.|++|+..+... ..++|.||+|+|||.+..-.+.+.+..|.+|++++||..-++++...+...
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 4899999999987665 678899999999998887777777888999999999999999999988764
No 203
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.01 E-value=0.0014 Score=62.59 Aligned_cols=93 Identities=19% Similarity=0.144 Sum_probs=51.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (955)
+..+++.+|+|+|||..+...+......+..++++.+................. . ......-+...+.+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~ 71 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVG------G----KKASGSGELRLRLAL 71 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhh------c----cCCCCCHHHHHHHHH
Confidence 567999999999999987554444323333688888776554433332200000 0 000111111223333
Q ss_pred HHHhcCCccCCccceEEEEccccCCCCC
Q 002183 171 GMLYRGSEVLKEVAWVIFDEIHYMKDRE 198 (955)
Q Consensus 171 ~~l~~~~~~l~~l~~vIiDEaH~l~d~~ 198 (955)
....... ..++++||++.+.+..
T Consensus 72 ~~~~~~~-----~~viiiDei~~~~~~~ 94 (148)
T smart00382 72 ALARKLK-----PDVLILDEITSLLDAE 94 (148)
T ss_pred HHHHhcC-----CCEEEEECCcccCCHH
Confidence 3333222 5899999999998754
No 204
>PHA02533 17 large terminase protein; Provisional
Probab=96.88 E-value=0.0089 Score=70.58 Aligned_cols=141 Identities=11% Similarity=0.159 Sum_probs=91.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHH-HHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhcCC-----
Q 002183 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAE-YAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKD----- 145 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~-~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~----- 145 (955)
.||.|+|+|+..+..+..++-.++..+=..|||.+.. +++..++ ..+..+++++|++.-|..+++.++..+..
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 5799999999999888667777899999999998766 4544444 55779999999999999999888765431
Q ss_pred -eeEEec-c--cccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCC--cceEEEe
Q 002183 146 -VGLMTG-D--VTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPP--AIKMVFL 219 (955)
Q Consensus 146 -vg~~tG-d--~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~--~~~~v~l 219 (955)
.++... . .....++.|.+.|... +...=.+..++|+||+|.+.+. ...|..+.-.+.. ..+++..
T Consensus 136 ~~~i~~~~~~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~~--~e~~~ai~p~lasg~~~r~iii 206 (534)
T PHA02533 136 QPGIVEWNKGSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPNF--IDFWLAIQPVISSGRSSKIIIT 206 (534)
T ss_pred hcceeecCccEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCCH--HHHHHHHHHHHHcCCCceEEEE
Confidence 122111 1 1123344554554321 1111225678999999988653 4566655544432 2355555
Q ss_pred ccc
Q 002183 220 SAT 222 (955)
Q Consensus 220 SAT 222 (955)
|.+
T Consensus 207 STp 209 (534)
T PHA02533 207 STP 209 (534)
T ss_pred ECC
Confidence 554
No 205
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.75 E-value=0.03 Score=63.34 Aligned_cols=125 Identities=13% Similarity=0.082 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCCchHHHHHH-HHHHHHh---cCCeEEEE-c-cChhhHHHHHHHHHHhcC-CeeEEecccccCCCCCEEE
Q 002183 91 NESVLVSAHTSAGKTAVAEY-AIAMAFR---DKQRVIYT-S-PLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLV 163 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~-~i~~~l~---~~~~vl~l-~-PtkaLa~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV 163 (955)
+..+++.+|||+|||.++.- +....+. .+.+|.++ + +.|.-+.++.+.+.+..+ ++ ..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--------------~~~ 239 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--------------KAI 239 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--------------Eee
Confidence 35688899999999987653 3222222 34454333 3 446666666666555432 21 123
Q ss_pred EeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHH---HHhCC-CcceEEEeccccCChHHHHHHHhhh
Q 002183 164 MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFLP-PAIKMVFLSATMSNATQFAEWICHL 236 (955)
Q Consensus 164 ~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~i---i~~l~-~~~~~v~lSAT~~n~~~~~~~l~~~ 236 (955)
.+++.+...+.. +.+.++||+|++.+.... ...+.++ +.... +.-.++.+|||.. ..++.+.+..+
T Consensus 240 ~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~~~~~~~~~~ 309 (388)
T PRK12723 240 ESFKDLKEEITQ----SKDFDLVLVDTIGKSPKD--FMKLAEMKELLNACGRDAEFHLAVSSTTK-TSDVKEIFHQF 309 (388)
T ss_pred CcHHHHHHHHHH----hCCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHHHHHHHHHh
Confidence 356666554443 457899999999987532 2223333 33333 3346899999985 44455666554
No 206
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.65 E-value=0.0036 Score=70.89 Aligned_cols=108 Identities=20% Similarity=0.270 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHH------hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHH--HHHHHHhcCCee
Q 002183 76 ELDPFQRVSVACL------ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK--YRELHQEFKDVG 147 (955)
Q Consensus 76 ~l~~~Q~~ai~~l------~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~--~~~l~~~~~~vg 147 (955)
+|++-|++++..+ ..+..++|.++-|+|||.+.-..+...-..+..+++++||-.-|..+ -..+...|+ ++
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~-i~ 79 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFG-IP 79 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcC-cc
Confidence 3788999998887 78899999999999999986554444434577899999997666544 233333333 11
Q ss_pred EEecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCC
Q 002183 148 LMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 148 ~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
+-. +....+ .++... .....++.++++|+||+-++..
T Consensus 80 ~~~-----~~~~~~---~~~~~~----~~~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 80 INN-----NEKSQC---KISKNS----RLRERLRKADVLIIDEISMVSA 116 (364)
T ss_pred ccc-----cccccc---cccccc----hhhhhhhhheeeecccccchhH
Confidence 100 011111 111111 1123477899999999988764
No 207
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.64 E-value=0.0073 Score=72.56 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=81.4
Q ss_pred CCCHHHHHHHHHH-hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCe---eE---
Q 002183 76 ELDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDV---GL--- 148 (955)
Q Consensus 76 ~l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~v---g~--- 148 (955)
.|+..|++|+... ......++.+=+|+|||.+....|-..+..|++||.++=|..-+..+.-.++.....+ |-
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~k 748 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEK 748 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccc
Confidence 4899999999765 5555688999999999998877777677789999999999988888877777653321 10
Q ss_pred ---------Eeccccc---------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCC
Q 002183 149 ---------MTGDVTL---------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR 197 (955)
Q Consensus 149 ---------~tGd~~~---------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~ 197 (955)
.+.+.+. -.++.||.+|=--+.+.++. .+.++++|+|||-.+.-+
T Consensus 749 ih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~----~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 749 IHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFV----NRQFDYCIIDEASQILLP 811 (1100)
T ss_pred cchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhh----ccccCEEEEccccccccc
Confidence 1222211 12456766664222222222 356899999999887643
No 208
>PRK08727 hypothetical protein; Validated
Probab=96.57 E-value=0.013 Score=61.95 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=27.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
..+++.||+|+|||..+..........+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 45899999999999877655555556677888875
No 209
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.55 E-value=0.031 Score=59.20 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHh-------c-CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEE
Q 002183 78 DPFQRVSVACLE-------R-NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLM 149 (955)
Q Consensus 78 ~~~Q~~ai~~l~-------~-g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~ 149 (955)
++.|+.++..+. . ...+++.+++|+|||..+..........+..++|+. . .++...++..+..
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-~----~~l~~~l~~~~~~---- 148 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-V----ADIMSAMKDTFSN---- 148 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-H----HHHHHHHHHHHhh----
Confidence 345666665442 1 147899999999999877544444445677777763 3 3334444443210
Q ss_pred ecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChH-HHHHHHHh-CCCcceEEEeccc
Q 002183 150 TGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGV-VWEESIIF-LPPAIKMVFLSAT 222 (955)
Q Consensus 150 tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~-~~~~ii~~-l~~~~~~v~lSAT 222 (955)
. -.+.+.+... +.+++++||||++......+.. .+..++.. .....+++..|--
T Consensus 149 ---------~---~~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 149 ---------S---ETSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred ---------c---cccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 0 0133344332 4578899999999876443232 22233332 2334556666543
No 210
>PRK08116 hypothetical protein; Validated
Probab=96.54 E-value=0.013 Score=63.24 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHh-----------cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhc
Q 002183 75 FELDPFQRVSVACLE-----------RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 75 f~l~~~Q~~ai~~l~-----------~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
|..++.|..++..+. .+..+++.|++|+|||..+.......+..+..++|+. ...|.+++...+..
T Consensus 87 f~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-~~~ll~~i~~~~~~-- 163 (268)
T PRK08116 87 FLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-FPQLLNRIKSTYKS-- 163 (268)
T ss_pred ccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHHHHHHhc--
Confidence 345677766654431 1234999999999999987643333444566676664 34454443333211
Q ss_pred CCeeEEecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccC--CCCCChHHHHHHHHh-CCCcceEEEec
Q 002183 144 KDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYM--KDRERGVVWEESIIF-LPPAIKMVFLS 220 (955)
Q Consensus 144 ~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l--~d~~rg~~~~~ii~~-l~~~~~~v~lS 220 (955)
+. -.+...+.+ .+.+.+++|||+++.- .++.....+ .++.. .....++|+.|
T Consensus 164 --------~~---------~~~~~~~~~-------~l~~~dlLviDDlg~e~~t~~~~~~l~-~iin~r~~~~~~~IiTs 218 (268)
T PRK08116 164 --------SG---------KEDENEIIR-------SLVNADLLILDDLGAERDTEWAREKVY-NIIDSRYRKGLPTIVTT 218 (268)
T ss_pred --------cc---------cccHHHHHH-------HhcCCCEEEEecccCCCCCHHHHHHHH-HHHHHHHHCCCCEEEEC
Confidence 00 001222222 2456789999999643 332222212 23322 23445667666
Q ss_pred cccC
Q 002183 221 ATMS 224 (955)
Q Consensus 221 AT~~ 224 (955)
-..+
T Consensus 219 N~~~ 222 (268)
T PRK08116 219 NLSL 222 (268)
T ss_pred CCCH
Confidence 5543
No 211
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.50 E-value=0.014 Score=70.94 Aligned_cols=130 Identities=13% Similarity=0.150 Sum_probs=98.6
Q ss_pred cHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCe
Q 002183 316 DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395 (955)
Q Consensus 316 ~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi 395 (955)
.+.-|+..|.. .+.+++||+.-.+..+-+-..|.-+++. .
T Consensus 1264 tLAiLLqQLk~-eghRvLIfTQMtkmLDVLeqFLnyHgyl---------------------------------------Y 1303 (1958)
T KOG0391|consen 1264 TLAILLQQLKS-EGHRVLIFTQMTKMLDVLEQFLNYHGYL---------------------------------------Y 1303 (1958)
T ss_pred HHHHHHHHHHh-cCceEEehhHHHHHHHHHHHHHhhcceE---------------------------------------E
Confidence 34444555544 4589999999998888888888765543 3
Q ss_pred EeecCCCCHHHHHHHHHHHhcC--CccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCC
Q 002183 396 AVHHSGLLPVIKELVELLFQEG--LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD 473 (955)
Q Consensus 396 ~~~H~~l~~~~R~~v~~~F~~g--~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~ 473 (955)
.-+.|...-++|...+++|... ....+.+|-..+.|||+-..+.|| .||. .++|.-=.|.--|+.|.|+.
T Consensus 1304 ~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVv----FYDs----DwNPtMDaQAQDrChRIGqt 1375 (1958)
T KOG0391|consen 1304 VRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVV----FYDS----DWNPTMDAQAQDRCHRIGQT 1375 (1958)
T ss_pred EEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEE----EecC----CCCchhhhHHHHHHHhhcCc
Confidence 3457888899999999999864 345678999999999999999888 7887 67777677777777777777
Q ss_pred CceEEEEEeCCc-ccHHHHHH
Q 002183 474 DRGICIIMVDEQ-MEMNTLKD 493 (955)
Q Consensus 474 ~~g~~ii~~~~~-~~~~~~~~ 493 (955)
...++|-+.++. ++.+.+++
T Consensus 1376 RDVHIYRLISe~TIEeniLkk 1396 (1958)
T KOG0391|consen 1376 RDVHIYRLISERTIEENILKK 1396 (1958)
T ss_pred cceEEEEeeccchHHHHHHhh
Confidence 778899988776 45544444
No 212
>PRK12377 putative replication protein; Provisional
Probab=96.43 E-value=0.025 Score=60.07 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=56.4
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (955)
..++++.+|+|+|||..+..........+..|+|+ +..+|..++...+.. +. +...+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i-~~~~l~~~l~~~~~~---------~~------------~~~~~l 158 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV-TVPDVMSRLHESYDN---------GQ------------SGEKFL 158 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE-EHHHHHHHHHHHHhc---------cc------------hHHHHH
Confidence 36799999999999987754444444556666555 445666655433311 00 111222
Q ss_pred HHHhcCCccCCccceEEEEccccCCCCCCh-HHHHHHHHh-CCCcceEEEecc
Q 002183 171 GMLYRGSEVLKEVAWVIFDEIHYMKDRERG-VVWEESIIF-LPPAIKMVFLSA 221 (955)
Q Consensus 171 ~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg-~~~~~ii~~-l~~~~~~v~lSA 221 (955)
+ .+.++++||+||++........ ..+..++.. .....+++..|-
T Consensus 159 ~-------~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 159 Q-------ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred H-------HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1 2568899999999765432212 122223322 233455666643
No 213
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.42 E-value=0.02 Score=60.64 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=27.4
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
+.++++.||+|+|||..+.........++.+++|+.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 3679999999999998776444444456777887755
No 214
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.38 E-value=0.069 Score=61.51 Aligned_cols=128 Identities=16% Similarity=0.134 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCchHHHHHH-HHHHH-HhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeH
Q 002183 91 NESVLVSAHTSAGKTAVAEY-AIAMA-FRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~-~i~~~-l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (955)
++.+++.+|||+|||....- +.... ...+.+|.++. |.+.-+.++.+.+.+..+ + +-..+.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~-v------------p~~~~~~~ 287 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMG-I------------PVEVVYDP 287 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhC-C------------ceEccCCH
Confidence 56788999999999976553 33333 34455555443 334334444444444322 1 11123455
Q ss_pred HHHHHHHhcCCccCCccceEEEEccccCCCC-CChHHHHHHHH-hCCCcceEEEeccccCChHHHHHHHhhh
Q 002183 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDR-ERGVVWEESII-FLPPAIKMVFLSATMSNATQFAEWICHL 236 (955)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~-~rg~~~~~ii~-~l~~~~~~v~lSAT~~n~~~~~~~l~~~ 236 (955)
+.+...+.. +.+.++||||.+-+.... ..-..+..++. ...+...++.+|||.. ..++.+.+..+
T Consensus 288 ~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~-~~~l~~~~~~f 354 (424)
T PRK05703 288 KELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK-YEDLKDIYKHF 354 (424)
T ss_pred HhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC-HHHHHHHHHHh
Confidence 656555543 346799999999764322 11122333333 1123345788999974 34455555544
No 215
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.36 E-value=0.052 Score=64.17 Aligned_cols=151 Identities=11% Similarity=0.156 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHH---hcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHHHHHhcCCee--
Q 002183 74 SFELDPFQRVSVACL---ERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFKDVG-- 147 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l---~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg-- 147 (955)
|.-|+|.=.+=|+.+ .+.+-.++.+|=|.|||.+..+.+...+. .+.+++|++|...-+.+.++.++..+...+
T Consensus 167 p~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~ 246 (752)
T PHA03333 167 PEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHK 246 (752)
T ss_pred cCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccc
Confidence 444677766666654 44566788999999999987765544443 688999999999999999988777654222
Q ss_pred -------E---Eecccc---c-C-C-----CCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHH
Q 002183 148 -------L---MTGDVT---L-S-P-----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (955)
Q Consensus 148 -------~---~tGd~~---~-~-~-----~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii 207 (955)
. ..|+.. + . + ...|...+.. .+...-..++++|+|||+.+.+ ..|..++
T Consensus 247 ~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~----~~l~aIl 315 (752)
T PHA03333 247 PWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP----GALLSVL 315 (752)
T ss_pred cccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH----HHHHHHH
Confidence 1 122110 0 0 0 0223332221 1111223578999999999975 5566666
Q ss_pred HhCC-CcceEEEeccccCChHHHHHHHhhh
Q 002183 208 IFLP-PAIKMVFLSATMSNATQFAEWICHL 236 (955)
Q Consensus 208 ~~l~-~~~~~v~lSAT~~n~~~~~~~l~~~ 236 (955)
-.+. .+.+++++|-+.. ...+..++..+
T Consensus 316 P~l~~~~~k~IiISS~~~-~~s~tS~L~nL 344 (752)
T PHA03333 316 PLMAVKGTKQIHISSPVD-ADSWISRVGEV 344 (752)
T ss_pred HHHccCCCceEEEeCCCC-cchHHHHhhhh
Confidence 5554 4677788887753 33333444443
No 216
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.34 E-value=0.0082 Score=71.22 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=78.0
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccChhhHHHHHH---HHHHhc-----CC--eeEEeccc-------
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYR---ELHQEF-----KD--VGLMTGDV------- 153 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~PtkaLa~Q~~~---~l~~~~-----~~--vg~~tGd~------- 153 (955)
++=|.+.||+|||.+|.-.|...-+. -.+.|+++|+.|.-.-++. ...+.| .+ .-.++-+.
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~~ 155 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFKF 155 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHHhh
Confidence 56689999999999998887766443 3578999999987655433 333334 22 11222211
Q ss_pred ccCCCCCEEEEeHHHHH------HHHhcCCccCCc-----------c----ceEEEEccccCCCCCChHHHHHHHHhCCC
Q 002183 154 TLSPNASCLVMTTEILR------GMLYRGSEVLKE-----------V----AWVIFDEIHYMKDRERGVVWEESIIFLPP 212 (955)
Q Consensus 154 ~~~~~~~IlV~Tpe~L~------~~l~~~~~~l~~-----------l----~~vIiDEaH~l~d~~rg~~~~~ii~~l~~ 212 (955)
..+..+.++++|..... +|+...+....+ + -.||+||=|++... ...|.. +..+.+
T Consensus 156 ~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~~-i~~l~p 232 (985)
T COG3587 156 KSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYGA-IKQLNP 232 (985)
T ss_pred ccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHHH-HHhhCc
Confidence 22446778888876553 234332211111 1 27999999999742 233333 333332
Q ss_pred cceEEEeccccCCh
Q 002183 213 AIKMVFLSATMSNA 226 (955)
Q Consensus 213 ~~~~v~lSAT~~n~ 226 (955)
.-++=+|||.++.
T Consensus 233 -l~ilRfgATfkd~ 245 (985)
T COG3587 233 -LLILRFGATFKDE 245 (985)
T ss_pred -eEEEEecccchhh
Confidence 3477899998744
No 217
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.31 E-value=0.038 Score=58.19 Aligned_cols=49 Identities=10% Similarity=0.062 Sum_probs=32.5
Q ss_pred HHHHHHHHHH----hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 79 PFQRVSVACL----ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 79 ~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
.....++..+ ..+..+++.||+|+|||..+..........+..++|+..
T Consensus 26 ~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 26 AELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred HHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 3444455444 234679999999999998776554455456666776654
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.089 Score=58.79 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=71.6
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEE-EEeHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCL-VMTTEI 168 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~Il-V~Tpe~ 168 (955)
..+.+.+|||+|||.....-.......+.++.++. |.|.-+.++.+.+.+.. +.+++ +.+|..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~l--------------gipv~v~~d~~~ 307 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI--------------GFEVIAVRDEAA 307 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhc--------------CCcEEecCCHHH
Confidence 56789999999999876554444445666665444 34433443334443322 23333 347777
Q ss_pred HHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHH---hCCCcceEEEeccccCChHHHHHHHhhh
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII---FLPPAIKMVFLSATMSNATQFAEWICHL 236 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~---~l~~~~~~v~lSAT~~n~~~~~~~l~~~ 236 (955)
+.+.+..... -.+.++|++|-+=+.... ...+.++.. ...++.-++.+|||... .+..+++..+
T Consensus 308 L~~aL~~lk~-~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~PdevlLVLsATtk~-~d~~~i~~~F 374 (436)
T PRK11889 308 MTRALTYFKE-EARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPDYICLTLSASMKS-KDMIEIITNF 374 (436)
T ss_pred HHHHHHHHHh-ccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcCCCeEEEEECCccCh-HHHHHHHHHh
Confidence 7766543211 125799999998665432 333444433 33344446679998643 3445565544
No 219
>PRK05642 DNA replication initiation factor; Validated
Probab=96.30 E-value=0.018 Score=60.87 Aligned_cols=36 Identities=8% Similarity=0.116 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
..+++.||+|+|||..+..........+.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH
Confidence 458899999999998754333333445778888764
No 220
>PRK09183 transposase/IS protein; Provisional
Probab=96.28 E-value=0.047 Score=58.67 Aligned_cols=56 Identities=29% Similarity=0.240 Sum_probs=38.1
Q ss_pred CHHHHHHHH---HHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHH
Q 002183 78 DPFQRVSVA---CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134 (955)
Q Consensus 78 ~~~Q~~ai~---~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q 134 (955)
+.-|...+. .+..+.++++.||+|+|||..+......+...|.+++|+. ...|..+
T Consensus 86 ~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 86 PQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLLLQ 144 (259)
T ss_pred CHHHHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHHHHH
Confidence 344444443 3578899999999999999887655445556677887764 3345444
No 221
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.18 E-value=0.037 Score=62.18 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=48.5
Q ss_pred hhhcCCCC-CCHHHHHHHHH----HhcCCcEEEEcCCCCchHHHHHHHHHHHHh----cCCeEEEEccChhhHHHHHHHH
Q 002183 69 MAKTYSFE-LDPFQRVSVAC----LERNESVLVSAHTSAGKTAVAEYAIAMAFR----DKQRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 69 ~~~~~~f~-l~~~Q~~ai~~----l~~g~~vlv~apTGsGKTl~~~~~i~~~l~----~~~~vl~l~PtkaLa~Q~~~~l 139 (955)
+.--|||. .+|-|-+=+.. +..+.+.++-+|+|+|||+..+-.+..... ...+.||.+-|..=..-...++
T Consensus 8 l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 8 LLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred eeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHH
Confidence 33457887 88999877654 466778999999999999875543332221 2357888887755444444444
Q ss_pred HH
Q 002183 140 HQ 141 (955)
Q Consensus 140 ~~ 141 (955)
+.
T Consensus 88 ~~ 89 (755)
T KOG1131|consen 88 KR 89 (755)
T ss_pred HH
Confidence 43
No 222
>PRK06893 DNA replication initiation factor; Validated
Probab=96.18 E-value=0.019 Score=60.65 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
..+++.||+|+|||..+.........++.+++|+.-
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH
Confidence 357899999999998776555555566777877664
No 223
>PRK06921 hypothetical protein; Provisional
Probab=96.18 E-value=0.041 Score=59.29 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=30.0
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEEccChhhHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQ 134 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l~PtkaLa~Q 134 (955)
.+.++++.++||+|||..+.......+.. +..|+|+.. ..+..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH-HHHHHH
Confidence 46789999999999998774333334444 677777764 344444
No 224
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.15 E-value=0.039 Score=61.15 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=32.5
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK 135 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~ 135 (955)
.+.++++.||||+|||..+.......+.+|..|+|++- ..|..+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~-~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA-DELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH-HHHHHHH
Confidence 46889999999999999776555555667777877653 4454443
No 225
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.08 E-value=0.058 Score=73.24 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=49.6
Q ss_pred cCCCCCCHHHHHHHHHHhcC--CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHH
Q 002183 72 TYSFELDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYR 137 (955)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~ 137 (955)
..+|.|++-|++|+..+... +-.+|.++.|+|||.+.-..+...-..|.+|+.++||-.-+....+
T Consensus 425 ~~~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e 492 (1960)
T TIGR02760 425 LSEFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQ 492 (1960)
T ss_pred cccCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 34788999999999987654 6688899999999987544333333468899999999765555433
No 226
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.08 E-value=0.028 Score=68.53 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc----CCeEEEEccChhhHHHHHHHHHHhcCCeeEE
Q 002183 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLM 149 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~----~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~ 149 (955)
++.|++-|++|+.. ...+++|.|..|||||.+...-+...+.. +.++++++.++..|+.+.+++.+..+
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg----- 266 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG----- 266 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC-----
Confidence 46799999999874 34578999999999999987777666643 35899999999999999999888653
Q ss_pred ecccccCCCCCEEEEeHHHHHH
Q 002183 150 TGDVTLSPNASCLVMTTEILRG 171 (955)
Q Consensus 150 tGd~~~~~~~~IlV~Tpe~L~~ 171 (955)
...|.|.|...+..
T Consensus 267 --------~~~v~v~TFHSlal 280 (684)
T PRK11054 267 --------TEDITARTFHALAL 280 (684)
T ss_pred --------CCCcEEEeHHHHHH
Confidence 14688999988764
No 227
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.99 E-value=0.028 Score=60.09 Aligned_cols=107 Identities=20% Similarity=0.187 Sum_probs=65.5
Q ss_pred CCCC-CCHHHHHHHHHH-------hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC
Q 002183 73 YSFE-LDPFQRVSVACL-------ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 73 ~~f~-l~~~Q~~ai~~l-------~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
+.|+ ....++.++..+ .++.++++.||+|+|||..+.......+..|.+ ++.+++.+|+.++...+..
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~s-v~f~~~~el~~~Lk~~~~~--- 154 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGIS-VLFITAPDLLSKLKAAFDE--- 154 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCe-EEEEEHHHHHHHHHHHHhc---
Confidence 4555 444566655443 467899999999999999875444444433444 4556677787776555533
Q ss_pred CeeEEecccccCCCCCEEEEe-HHHHHHHHhcCCccCCccceEEEEccccCCCCC-ChHHHHHHHHh
Q 002183 145 DVGLMTGDVTLSPNASCLVMT-TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE-RGVVWEESIIF 209 (955)
Q Consensus 145 ~vg~~tGd~~~~~~~~IlV~T-pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~-rg~~~~~ii~~ 209 (955)
.+ .+.|.. .+.+++++||||.=+..... ....|..+|..
T Consensus 155 -------------------~~~~~~l~~-------~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~ 195 (254)
T COG1484 155 -------------------GRLEEKLLR-------ELKKVDLLIIDDIGYEPFSQEEADLLFQLISR 195 (254)
T ss_pred -------------------CchHHHHHH-------HhhcCCEEEEecccCccCCHHHHHHHHHHHHH
Confidence 12 223322 25688999999998765332 22344444443
No 228
>PRK14974 cell division protein FtsY; Provisional
Probab=95.94 E-value=0.14 Score=56.85 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=65.2
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc--ChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeH-HH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP--LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT-EI 168 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P--tkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp-e~ 168 (955)
.-+++.+++|+|||.+..-........+.+++++.. .|+=+.++.+.+...++ +.++.+... . .| ..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lg-v~v~~~~~g----~-----dp~~v 210 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLG-VKVIKHKYG----A-----DPAAV 210 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcC-CceecccCC----C-----CHHHH
Confidence 347789999999998655444444455667766543 34444333444444433 111111110 0 12 12
Q ss_pred HHHHHhcCCccCCccceEEEEccccCCCC-CChHHHHHHHHhCCCcceEEEeccccCC
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDR-ERGVVWEESIIFLPPAIKMVFLSATMSN 225 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~d~-~rg~~~~~ii~~l~~~~~~v~lSAT~~n 225 (955)
+.+.+.... ..+.++|++|.++++... ..-..+..+.....++..++.++||..+
T Consensus 211 ~~~ai~~~~--~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 211 AYDAIEHAK--ARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred HHHHHHHHH--hCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 222222111 235679999999988632 2222233344445667778899998764
No 229
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.93 E-value=0.044 Score=57.63 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=27.1
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
..+.++++.||+|+|||..+..........+..++|+
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i 72 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYL 72 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 3456899999999999998866555555555566654
No 230
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.93 E-value=0.03 Score=68.66 Aligned_cols=86 Identities=20% Similarity=0.173 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc-C---CeEEEEccChhhHHHHHHHHHHhcCCeeEEec
Q 002183 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-K---QRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-~---~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tG 151 (955)
.|++-|++|+.. .+..++|.|..|||||.+...-+...+.. + .++++++.|+..|+++..++...++.-
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~----- 74 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK----- 74 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc-----
Confidence 378999999875 35679999999999999988888887753 3 479999999999999999998865420
Q ss_pred ccccCCCCCEEEEeHHHHHHHH
Q 002183 152 DVTLSPNASCLVMTTEILRGML 173 (955)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l 173 (955)
....+.|+|...+...+
T Consensus 75 -----~~~~v~i~TfHS~~~~i 91 (672)
T PRK10919 75 -----EARGLMISTFHTLGLDI 91 (672)
T ss_pred -----cccCcEEEcHHHHHHHH
Confidence 12357899998876543
No 231
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.84 E-value=0.053 Score=70.77 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=79.0
Q ss_pred hcCCCCCCHHHHHHHHHHhc--CCcEEEEcCCCCchHHHHH--HHHHHHH--hcCCeEEEEccChhhHHHHHHHHHHhcC
Q 002183 71 KTYSFELDPFQRVSVACLER--NESVLVSAHTSAGKTAVAE--YAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~--g~~vlv~apTGsGKTl~~~--~~i~~~l--~~~~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
....+.|++-|++|+..++. ++-+++++..|+|||.+.- +.++..+ ..+.+++.++||-.-+.... +.
T Consensus 830 ~~~~~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~----e~-- 903 (1623)
T PRK14712 830 GELMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR----SA-- 903 (1623)
T ss_pred hhhhcccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH----Hh--
Confidence 34456799999999998864 4678899999999998743 2223333 23677999999976665542 21
Q ss_pred CeeEEecccccCCCCCEEEEeHHHHHHHH----hcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCC-cceEEEe
Q 002183 145 DVGLMTGDVTLSPNASCLVMTTEILRGML----YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPP-AIKMVFL 219 (955)
Q Consensus 145 ~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l----~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~-~~~~v~l 219 (955)
|+ --.|..+|+... ..+......-++|||||+=++.. ..+..++..++. +.++|++
T Consensus 904 --Gi-------------~A~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASMV~~----~~m~~ll~~~~~~garvVLV 964 (1623)
T PRK14712 904 --GV-------------DAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYALIAAGGGRAVAS 964 (1623)
T ss_pred --Cc-------------hHhhHHHHhccccchhhcccCCCCCCcEEEEEccccccH----HHHHHHHHhhhhCCCEEEEE
Confidence 10 012333332210 01111223458999999998873 345566666653 5788887
Q ss_pred ccc
Q 002183 220 SAT 222 (955)
Q Consensus 220 SAT 222 (955)
-=+
T Consensus 965 GD~ 967 (1623)
T PRK14712 965 GDT 967 (1623)
T ss_pred cch
Confidence 644
No 232
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.84 E-value=0.013 Score=59.60 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=38.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHh
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
.++|.||+|+|||..+.--+...+.+|.+++|++.. +-..++.+.+...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHHc
Confidence 378999999999998877777777889999999764 5566666666554
No 233
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.68 E-value=0.077 Score=57.42 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHH----hcCC-cEEEEcCCCCchHHHHHHHHHHHHhcC-CeEEEEccChhhHHHHHHHHHHhc
Q 002183 77 LDPFQRVSVACL----ERNE-SVLVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 77 l~~~Q~~ai~~l----~~g~-~vlv~apTGsGKTl~~~~~i~~~l~~~-~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
+++.+.+++..+ ..+. .+++.||+|+|||..+... ...+..+ ..+.++.++..-..+....+...+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l-~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~l 95 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNL-LKRLDQERVVAAKLVNTRVDAEDLLRMVAADF 95 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH-HHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHc
Confidence 566777787765 2333 6889999999999887644 3333322 233344444333445555555444
No 234
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.62 E-value=0.056 Score=65.04 Aligned_cols=136 Identities=19% Similarity=0.221 Sum_probs=85.1
Q ss_pred CCCCCCHHHHHHHHHH----hcC-CcEEEEcCCCCchHHHHHHHHHHHHhcC--CeEEEEccChhhHHHHHHHHHHhcCC
Q 002183 73 YSFELDPFQRVSVACL----ERN-ESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSNQKYRELHQEFKD 145 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l----~~g-~~vlv~apTGsGKTl~~~~~i~~~l~~~--~~vl~l~PtkaLa~Q~~~~l~~~~~~ 145 (955)
+.-..+.-|.+++..+ ..+ .-+++.|.=|=|||.+.-+++..+...+ .+++|++|+++=+...+.-..+-+..
T Consensus 208 ~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~ 287 (758)
T COG1444 208 YELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEF 287 (758)
T ss_pred hhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHH
Confidence 3334677788877654 223 3688899999999999998875554444 49999999998887776655554433
Q ss_pred eeEE-----e--ccccc-C-CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceE
Q 002183 146 VGLM-----T--GDVTL-S-PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKM 216 (955)
Q Consensus 146 vg~~-----t--Gd~~~-~-~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~ 216 (955)
.|.- + |.... . ....|=+.+|.... ..-++||+|||=-+. -+.+..++. ..+.
T Consensus 288 lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~~----~~~r 349 (758)
T COG1444 288 LGYKRKVAPDALGEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLLR----RFPR 349 (758)
T ss_pred hCCccccccccccceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHHh----hcCc
Confidence 3221 1 11111 1 12234455665331 126799999998664 233333333 3467
Q ss_pred EEeccccCCh
Q 002183 217 VFLSATMSNA 226 (955)
Q Consensus 217 v~lSAT~~n~ 226 (955)
++||.|+...
T Consensus 350 v~~sTTIhGY 359 (758)
T COG1444 350 VLFSTTIHGY 359 (758)
T ss_pred eEEEeeeccc
Confidence 9999999754
No 235
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.069 Score=59.95 Aligned_cols=116 Identities=20% Similarity=0.205 Sum_probs=64.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHH-hcC-CeEEEEc-cC-hhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEe
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAF-RDK-QRVIYTS-PL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMT 165 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~-~~vl~l~-Pt-kaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~T 165 (955)
+|..+++.+|||+|||....--..... ..| .++.+++ -+ +.=+.++.+.+.+.++ + +-..+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~g-v------------~~~~~~~ 202 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG-V------------PVHAVKD 202 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcC-C------------ceEecCC
Confidence 467899999999999987655444433 334 3444333 22 3335555555555443 1 1122334
Q ss_pred HHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC----CCcceEEEeccccCC
Q 002183 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL----PPAIKMVFLSATMSN 225 (955)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l----~~~~~~v~lSAT~~n 225 (955)
++.+...+.+ +.+.++|+||.+=+... ...+.+.+..+ .+.-.++.+|||...
T Consensus 203 ~~~l~~~l~~----l~~~DlVLIDTaG~~~~---d~~l~e~La~L~~~~~~~~~lLVLsAts~~ 259 (374)
T PRK14722 203 GGDLQLALAE----LRNKHMVLIDTIGMSQR---DRTVSDQIAMLHGADTPVQRLLLLNATSHG 259 (374)
T ss_pred cccHHHHHHH----hcCCCEEEEcCCCCCcc---cHHHHHHHHHHhccCCCCeEEEEecCccCh
Confidence 4444444432 45678999999965431 22233333333 223458889999753
No 236
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.54 E-value=0.034 Score=59.01 Aligned_cols=119 Identities=15% Similarity=0.091 Sum_probs=60.6
Q ss_pred HHHHHHHHHHh------cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecc
Q 002183 79 PFQRVSVACLE------RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD 152 (955)
Q Consensus 79 ~~Q~~ai~~l~------~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd 152 (955)
..|..++.++. ..-+.+..+|.|+|||-++.....+.... +.+ +.|++.-.
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~----------------------~~~-~~rvl~ln 95 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCE----------------------QLF-PCRVLELN 95 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCc----------------------ccc-ccchhhhc
Confidence 35777766652 34578999999999999875543333110 111 11111111
Q ss_pred cccCCCCCEE---EEeHHHHHHHHh-cCCccCCccceEEEEccccCCCCCChHHHH---HHHHhCCCcceEEEeccccC
Q 002183 153 VTLSPNASCL---VMTTEILRGMLY-RGSEVLKEVAWVIFDEIHYMKDRERGVVWE---ESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 153 ~~~~~~~~Il---V~Tpe~L~~~l~-~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~---~ii~~l~~~~~~v~lSAT~~ 224 (955)
.+...+..++ |=.++.+..... ........+..+|+||||.|. ...|. .++...+.+.++++..--++
T Consensus 96 aSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt----sdaq~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 96 ASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT----SDAQAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred ccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh----HHHHHHHHHHHhccccceEEEEEcCChh
Confidence 1111111110 112222222221 112334567899999999997 33444 33444566777777765443
No 237
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.53 E-value=0.029 Score=55.21 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=32.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHH
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q 134 (955)
+++.||+|+|||..+...+......+.+++|+..-..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~ 42 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEEL 42 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHH
Confidence 68999999999998776666666678889998877655544
No 238
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.45 E-value=0.064 Score=60.20 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=23.6
Q ss_pred HHHHHHH-HhcCC--cEEEEcCCCCchHHHHHHHHHHH
Q 002183 81 QRVSVAC-LERNE--SVLVSAHTSAGKTAVAEYAIAMA 115 (955)
Q Consensus 81 Q~~ai~~-l~~g~--~vlv~apTGsGKTl~~~~~i~~~ 115 (955)
..+.+.. +..+. ++++.||+|+|||..+.......
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444433 45555 79999999999999875544333
No 239
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.41 E-value=0.092 Score=57.98 Aligned_cols=95 Identities=16% Similarity=0.184 Sum_probs=55.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG 171 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~ 171 (955)
.++|+.+|+|+|||.+|.+..-. .+....-++.+.+=..++...+.+ ...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~---~~~~f~~~sAv~~gvkdlr~i~e~---------------------------a~~ 98 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGT---TNAAFEALSAVTSGVKDLREIIEE---------------------------ARK 98 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHh---hCCceEEeccccccHHHHHHHHHH---------------------------HHH
Confidence 58999999999999987654332 255555555554444333222222 111
Q ss_pred HHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccCCh
Q 002183 172 MLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNA 226 (955)
Q Consensus 172 ~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~ 226 (955)
+...+ +=-++++||+|+++-. .-...+-++. +-.+++.-||-.|+
T Consensus 99 ~~~~g-----r~tiLflDEIHRfnK~----QQD~lLp~vE-~G~iilIGATTENP 143 (436)
T COG2256 99 NRLLG-----RRTILFLDEIHRFNKA----QQDALLPHVE-NGTIILIGATTENP 143 (436)
T ss_pred HHhcC-----CceEEEEehhhhcChh----hhhhhhhhhc-CCeEEEEeccCCCC
Confidence 22212 1237899999999743 1222333333 45688889997765
No 240
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.40 E-value=0.058 Score=52.04 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=58.5
Q ss_pred CeEeecCCCCHHHHHHHHHHHhcCC-ccEEEEcccccccCCCCCc---EEEEecceeccCC-------------------
Q 002183 394 GIAVHHSGLLPVIKELVELLFQEGL-VKALFATETFAMGLNMPAK---TVVFTAVKKWDGD------------------- 450 (955)
Q Consensus 394 gi~~~H~~l~~~~R~~v~~~F~~g~-i~VLvaT~~la~Gidip~~---~vVi~~~~~~d~~------------------- 450 (955)
+..++.-+..+.+...+++.|++.. ..||++|..+++|||+|+. .+||...+ |...
T Consensus 23 ~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP-fp~~~d~~~~~~~~~~~~~~~~~ 101 (141)
T smart00492 23 NLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP-FPYPDSPILKARLELLRDKGQIR 101 (141)
T ss_pred CCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC-CCCCCCHHHHHHHHHHHHhCCCC
Confidence 3455666666767788999998654 3799999889999999974 45554432 2111
Q ss_pred CCc----ccCHHHHHHHhccCCCCCCCCceEEEEE
Q 002183 451 SHR----YIGSGEYIQMSGRAGRRGKDDRGICIIM 481 (955)
Q Consensus 451 ~~~----~~s~~ey~Q~~GRaGR~G~~~~g~~ii~ 481 (955)
.+. |.......|.+||+-|...| .|.++++
T Consensus 102 ~~~~~~~~~a~~~l~Qa~GR~iR~~~D-~g~i~l~ 135 (141)
T smart00492 102 PFDFVSLPDAMRTLAQCVGRLIRGAND-YGVVVIA 135 (141)
T ss_pred chhHHHHHHHHHHHHHHhCccccCcCc-eEEEEEE
Confidence 111 12235688999999998765 6876665
No 241
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.39 E-value=0.078 Score=60.99 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=57.5
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccC-hhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~Pt-kaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (955)
.++++.||+|+|||.+.-...-..-.. +..++|+.-. ..-..+.+..+...+... ... ... .+.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~-----~~~-~~~-----~~~~~ 124 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGH-----PPP-SSG-----LSFDE 124 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCC-----CCC-CCC-----CCHHH
Confidence 679999999999999876554433332 3456666321 111223333333322110 000 000 12333
Q ss_pred HHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh---CCC-cceEEEecccc
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF---LPP-AIKMVFLSATM 223 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~---l~~-~~~~v~lSAT~ 223 (955)
+...+......-...-+|||||+|++........+..++.. ++. ++.+|+.+.+.
T Consensus 125 ~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 125 LFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCc
Confidence 33332211111123458999999999732222334444332 222 34466666554
No 242
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.39 E-value=0.074 Score=54.53 Aligned_cols=121 Identities=19% Similarity=0.164 Sum_probs=67.2
Q ss_pred cEEEEcCCCCchHHHHH-HHHHHHHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeH-HH
Q 002183 93 SVLVSAHTSAGKTAVAE-YAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT-EI 168 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~-~~i~~~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp-e~ 168 (955)
-+++++|||+|||.... +|...... +.++.+++ ..|.=+.++.+.+.+..+ +.+...... ..| +.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~-vp~~~~~~~---------~~~~~~ 71 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILG-VPFYVARTE---------SDPAEI 71 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHT-EEEEESSTT---------SCHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhc-cccchhhcc---------hhhHHH
Confidence 46789999999998655 34333334 65554443 456777777777777654 221111000 012 23
Q ss_pred HHHHHhcCCccCCccceEEEEccccCCCC-CChHHHHHHHHhCCCcceEEEeccccCCh
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDR-ERGVVWEESIIFLPPAIKMVFLSATMSNA 226 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~d~-~rg~~~~~ii~~l~~~~~~v~lSAT~~n~ 226 (955)
+...+... .-++.++|+||-+-+.... ..-..+..++....+.--++.+|||....
T Consensus 72 ~~~~l~~~--~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 72 AREALEKF--RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE 128 (196)
T ss_dssp HHHHHHHH--HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH
T ss_pred HHHHHHHH--hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH
Confidence 33333321 1245789999999765421 11233444555556666789999998643
No 243
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.35 E-value=0.068 Score=66.42 Aligned_cols=104 Identities=19% Similarity=0.123 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc----CCeEEEEccChhhHHHHHHHHHHhcCCeeEEec
Q 002183 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~----~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tG 151 (955)
.|+|-|++|+.. ....++|.|..|||||.+...-+...+.. ..++++++.|+..|++..+++.+..+.
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~------ 75 (715)
T TIGR01075 4 GLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGT------ 75 (715)
T ss_pred ccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcc------
Confidence 389999999974 34679999999999999988888777754 257999999999999999999887542
Q ss_pred ccccCCCCCEEEEeHHHHHHHHhcCC-ccC-CccceEEEEccc
Q 002183 152 DVTLSPNASCLVMTTEILRGMLYRGS-EVL-KEVAWVIFDEIH 192 (955)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l~~~~-~~l-~~l~~vIiDEaH 192 (955)
....+.|+|...+...+.+.. ..+ -.-.+-|+|+.+
T Consensus 76 -----~~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d 113 (715)
T TIGR01075 76 -----SARGMWIGTFHGLAHRLLRAHHLDAGLPQDFQILDSDD 113 (715)
T ss_pred -----cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHH
Confidence 113578999988765433221 100 011355777764
No 244
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.34 E-value=0.14 Score=67.99 Aligned_cols=129 Identities=13% Similarity=0.090 Sum_probs=79.8
Q ss_pred hhhcCCCCCCHHHHHHHHHHhcC--CcEEEEcCCCCchHHHHHH--HHHHHHh--cCCeEEEEccChhhHHHHHHHHHHh
Q 002183 69 MAKTYSFELDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEY--AIAMAFR--DKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 69 ~~~~~~f~l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~~--~i~~~l~--~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
......+.|++.|++|+..+..+ +-++|++..|+|||.+.-. .++..+. .+.+++.++||---+... .+.
T Consensus 960 ~~~~~~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L----~e~ 1035 (1747)
T PRK13709 960 VPGELMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEM----RSA 1035 (1747)
T ss_pred HHHHhcCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHH----Hhc
Confidence 34445678999999999998664 5788999999999987432 2222222 356789999997666543 221
Q ss_pred cCCeeEEecccccCCCCCEEEEeHHHHHHHHh----cCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCC-cceEE
Q 002183 143 FKDVGLMTGDVTLSPNASCLVMTTEILRGMLY----RGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPP-AIKMV 217 (955)
Q Consensus 143 ~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~----~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~-~~~~v 217 (955)
|+ --.|..+++.... .+......-++|||||+=++.. ..+..++...+. +.++|
T Consensus 1036 ----Gi-------------~A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~----~~m~~Ll~~~~~~garvV 1094 (1747)
T PRK13709 1036 ----GV-------------DAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYALIAAGGGRAV 1094 (1747)
T ss_pred ----Cc-------------chhhHHHHhcccccccccccCCCCCCcEEEEEccccccH----HHHHHHHHhhhcCCCEEE
Confidence 11 1124444432110 1111123458999999998874 345556666653 67888
Q ss_pred Eeccc
Q 002183 218 FLSAT 222 (955)
Q Consensus 218 ~lSAT 222 (955)
++-=+
T Consensus 1095 LVGD~ 1099 (1747)
T PRK13709 1095 SSGDT 1099 (1747)
T ss_pred Eecch
Confidence 77543
No 245
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.32 E-value=0.011 Score=58.89 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=58.3
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhcC-CeEEEEccChhhHHHHHHHHHHhcCCeeEEec------c--cccCCCCCEEEEe
Q 002183 95 LVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYTSPLKALSNQKYRELHQEFKDVGLMTG------D--VTLSPNASCLVMT 165 (955)
Q Consensus 95 lv~apTGsGKTl~~~~~i~~~l~~~-~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tG------d--~~~~~~~~IlV~T 165 (955)
++.|+=|-|||.+..+++...+..+ .++++++|..+=++..++.+..-....+.-.. . ........|-+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~ 80 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLRFNKQRIEFVA 80 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--------------------------CCC--B--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccccccceEEEEC
Confidence 5789999999999888777666554 48999999999888887766554443332110 0 0011245677778
Q ss_pred HHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccCChH
Q 002183 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNAT 227 (955)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~ 227 (955)
|+.+... -...+++|||||=.+. -+.+..+ +. +...+.||.|+...+
T Consensus 81 Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~l---l~-~~~~vv~stTi~GYE 127 (177)
T PF05127_consen 81 PDELLAE-------KPQADLLIVDEAAAIP----LPLLKQL---LR-RFPRVVFSTTIHGYE 127 (177)
T ss_dssp HHHHCCT-----------SCEEECTGGGS-----HHHHHHH---HC-CSSEEEEEEEBSSTT
T ss_pred CHHHHhC-------cCCCCEEEEechhcCC----HHHHHHH---Hh-hCCEEEEEeeccccc
Confidence 8766321 2245899999998774 2233333 32 334677888887553
No 246
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.32 E-value=0.088 Score=61.61 Aligned_cols=76 Identities=16% Similarity=0.334 Sum_probs=47.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (955)
..+++.||+|+|||..+.........+ +.+++|+.. ..+.++....+.. .+.+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~-~~~~~~~~~~~~~----------------------~~~~~~ 205 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS-EKFTNDFVNALRN----------------------NTMEEF 205 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHc----------------------CcHHHH
Confidence 458999999999998775444444333 567777754 4555554444321 022333
Q ss_pred HHHHhcCCccCCccceEEEEccccCCCC
Q 002183 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDR 197 (955)
Q Consensus 170 ~~~l~~~~~~l~~l~~vIiDEaH~l~d~ 197 (955)
... +.+.+++|+||+|.+...
T Consensus 206 ~~~-------~~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 206 KEK-------YRSVDVLLIDDIQFLAGK 226 (450)
T ss_pred HHH-------HhcCCEEEEehhhhhcCC
Confidence 322 346789999999998653
No 247
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.31 E-value=0.078 Score=65.87 Aligned_cols=104 Identities=21% Similarity=0.126 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc----CCeEEEEccChhhHHHHHHHHHHhcCCeeEEec
Q 002183 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~----~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tG 151 (955)
.|+|-|++|+.. ....++|.|..|||||.+...-+...+.. ..++++++-|+..|+++.+++.+..+.
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~------ 80 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGT------ 80 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhcc------
Confidence 499999999974 34579999999999999988888777753 357999999999999999999887542
Q ss_pred ccccCCCCCEEEEeHHHHHHHHhcCCc-cC-CccceEEEEccc
Q 002183 152 DVTLSPNASCLVMTTEILRGMLYRGSE-VL-KEVAWVIFDEIH 192 (955)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l~~~~~-~l-~~l~~vIiDEaH 192 (955)
....+.|+|...+...+.+... .+ -.-.+-|+|+.+
T Consensus 81 -----~~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d 118 (721)
T PRK11773 81 -----SQGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDD 118 (721)
T ss_pred -----CCCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHH
Confidence 1135789999887654432210 00 012345777664
No 248
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.25 E-value=0.094 Score=60.82 Aligned_cols=103 Identities=12% Similarity=0.219 Sum_probs=58.9
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG 171 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~ 171 (955)
..+++.||+|+|||..+..........+.+++|+.. ..+.++....+.. + +.+.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~~f~~~~~~~l~~---------~-------------~~~~f~~ 198 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-ELFTEHLVSAIRS---------G-------------EMQRFRQ 198 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-HHHHHHHHHHHhc---------c-------------hHHHHHH
Confidence 458999999999998775443333446788888875 3444443333321 0 1233332
Q ss_pred HHhcCCccCCccceEEEEccccCCCCCCh-HHHHHHHHhC-CCcceEEEeccccC
Q 002183 172 MLYRGSEVLKEVAWVIFDEIHYMKDRERG-VVWEESIIFL-PPAIKMVFLSATMS 224 (955)
Q Consensus 172 ~l~~~~~~l~~l~~vIiDEaH~l~d~~rg-~~~~~ii~~l-~~~~~~v~lSAT~~ 224 (955)
. +.+.+++++||+|.+...... ..+..++..+ ..+.++|+.|-+.|
T Consensus 199 ~-------~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p 246 (445)
T PRK12422 199 F-------YRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAP 246 (445)
T ss_pred H-------cccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCH
Confidence 1 346789999999998754221 1122222222 24456666665544
No 249
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.20 E-value=0.11 Score=60.11 Aligned_cols=76 Identities=16% Similarity=0.329 Sum_probs=46.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (955)
..+++.||+|+|||..+.........+ +.+++|+... .+.++....+.. + +.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~-~~~~~~~~~~~~---------~-------------~~~~~ 193 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE-KFTNDFVNALRN---------N-------------KMEEF 193 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH-HHHHHHHHHHHc---------C-------------CHHHH
Confidence 358899999999998774333333333 5678887543 444443333321 0 23333
Q ss_pred HHHHhcCCccCCccceEEEEccccCCCC
Q 002183 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDR 197 (955)
Q Consensus 170 ~~~l~~~~~~l~~l~~vIiDEaH~l~d~ 197 (955)
... +.+.+++|+||+|.+...
T Consensus 194 ~~~-------~~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 194 KEK-------YRSVDLLLIDDIQFLAGK 214 (405)
T ss_pred HHH-------HHhCCEEEEehhhhhcCC
Confidence 322 235689999999998754
No 250
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.09 E-value=0.17 Score=52.92 Aligned_cols=100 Identities=18% Similarity=0.272 Sum_probs=57.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHH---hcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAF---RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l---~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (955)
.+++.||+|+|||-. +.++...+ .++.+|+|+... +..+.....+.. ...+.+
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~----------------------~~~~~~ 91 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD----------------------GEIEEF 91 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT----------------------TSHHHH
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc----------------------ccchhh
Confidence 489999999999984 34444433 246778887653 344433333322 122333
Q ss_pred HHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHH----h-CCCcceEEEeccccCCh
Q 002183 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII----F-LPPAIKMVFLSATMSNA 226 (955)
Q Consensus 170 ~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~----~-l~~~~~~v~lSAT~~n~ 226 (955)
.+ .+...++++||.+|.+.+. ..|.+.+. . ...+.++|+.|...|+.
T Consensus 92 ~~-------~~~~~DlL~iDDi~~l~~~---~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 92 KD-------RLRSADLLIIDDIQFLAGK---QRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp HH-------HHCTSSEEEEETGGGGTTH---HHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred hh-------hhhcCCEEEEecchhhcCc---hHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 32 2457899999999999753 33433322 2 23456788888777643
No 251
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.09 E-value=0.43 Score=53.34 Aligned_cols=127 Identities=9% Similarity=0.096 Sum_probs=69.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE-c-cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCE-EEEeH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT-S-PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASC-LVMTT 166 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l-~-PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~I-lV~Tp 166 (955)
.++.+++++|||+|||..+.-........+.++.++ + |.|.=+..+.+.+.+..+ .++ ++.+|
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lg--------------vpv~~~~dp 270 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLD--------------VELIVATSP 270 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCC--------------CCEEecCCH
Confidence 356788999999999987655444455566666444 3 344433333333333221 122 23467
Q ss_pred HHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHH---HhCCCcceEEEeccccCChHHHHHHHh
Q 002183 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESI---IFLPPAIKMVFLSATMSNATQFAEWIC 234 (955)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii---~~l~~~~~~v~lSAT~~n~~~~~~~l~ 234 (955)
+.+...+.... ..++.++|++|=+=+.... ...++++- ....++.-++.+|||.. ..+..+.+.
T Consensus 271 ~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d--~~~l~EL~~l~~~~~p~~~~LVLsag~~-~~d~~~i~~ 337 (407)
T PRK12726 271 AELEEAVQYMT-YVNCVDHILIDTVGRNYLA--EESVSEISAYTDVVHPDLTCFTFSSGMK-SADVMTILP 337 (407)
T ss_pred HHHHHHHHHHH-hcCCCCEEEEECCCCCccC--HHHHHHHHHHhhccCCceEEEECCCccc-HHHHHHHHH
Confidence 77765543211 1246799999998654321 23333332 23344444667788754 334445554
No 252
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.05 E-value=0.37 Score=57.06 Aligned_cols=135 Identities=16% Similarity=0.269 Sum_probs=88.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHH--hcCCeEEEEccChhhHHHHHHHHHHhcC------CeeEEeccccc-----CCC
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFK------DVGLMTGDVTL-----SPN 158 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l--~~~~~vl~l~PtkaLa~Q~~~~l~~~~~------~vg~~tGd~~~-----~~~ 158 (955)
+-.++..|==.|||.+...-+...+ ..|.+++|++|.+.-++..++++...+. .+....|+ .+ +..
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~i~f~nG~ 333 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TISFSFPDGS 333 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEEEEecCCC
Confidence 5678899999999986653333333 3699999999999999999999988643 23334453 33 111
Q ss_pred -CCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC-CCcceEEEeccccCChHHHHHHHhhh
Q 002183 159 -ASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLSATMSNATQFAEWICHL 236 (955)
Q Consensus 159 -~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l-~~~~~~v~lSAT~~n~~~~~~~l~~~ 236 (955)
..|.++|. -..++..-..++++|+|||+.+.+ ..|..++-.+ ..+.++|++|-|-+. +.-..|+..+
T Consensus 334 kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~Ns~-~~sTSFL~nL 402 (738)
T PHA03368 334 RSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSSTNTG-KASTSFLYNL 402 (738)
T ss_pred ccEEEEEec------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEecCCCC-ccchHHHHhh
Confidence 24555432 112223334789999999999985 4566666443 357899999988642 2233566555
Q ss_pred cC
Q 002183 237 HK 238 (955)
Q Consensus 237 ~~ 238 (955)
++
T Consensus 403 k~ 404 (738)
T PHA03368 403 KG 404 (738)
T ss_pred cC
Confidence 44
No 253
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.98 E-value=1.4 Score=49.50 Aligned_cols=139 Identities=18% Similarity=0.200 Sum_probs=78.9
Q ss_pred CCcEEEEcCCCCchHHHHH-HHHHHH-HhcC-CeEEEEccC-hhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeH
Q 002183 91 NESVLVSAHTSAGKTAVAE-YAIAMA-FRDK-QRVIYTSPL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~-~~i~~~-l~~~-~~vl~l~Pt-kaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (955)
++.+.+.||||.|||..-. +|.... +... .-.|+++-| |-=|..+.+.+.+..+ =+=++|-+|
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~-------------vp~~vv~~~ 269 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMG-------------VPLEVVYSP 269 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhC-------------CceEEecCH
Confidence 6778899999999997533 333333 2223 334555554 3333444444444332 122455678
Q ss_pred HHHHHHHhcCCccCCccceEEEEccccCC-CCCChHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEe
Q 002183 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMK-DRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVY 245 (955)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vIiDEaH~l~-d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~ 245 (955)
.-|...+.. +.+.++|.+|=+-+=. |...-..+++.+....+--..+.+|||.. ..++.+.+..
T Consensus 270 ~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~---------- 334 (407)
T COG1419 270 KELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQ---------- 334 (407)
T ss_pred HHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHH----------
Confidence 777665543 6677999999885322 32222233444444444455788999974 4455555543
Q ss_pred cCCCcccceEEEee
Q 002183 246 TDFRPTPLQHYVFP 259 (955)
Q Consensus 246 ~~~rp~pl~~~~~~ 259 (955)
++..|+..+++.
T Consensus 335 --f~~~~i~~~I~T 346 (407)
T COG1419 335 --FSLFPIDGLIFT 346 (407)
T ss_pred --hccCCcceeEEE
Confidence 456677666653
No 254
>PRK04195 replication factor C large subunit; Provisional
Probab=94.97 E-value=0.12 Score=61.03 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
.+.+++.||+|+|||..+..
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999987643
No 255
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.97 E-value=0.1 Score=64.37 Aligned_cols=85 Identities=18% Similarity=0.161 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc----CCeEEEEccChhhHHHHHHHHHHhcCCeeEEecc
Q 002183 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD 152 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~----~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd 152 (955)
|+|-|++|+.. .+.+++|.|..|||||.+...-+...+.. ..++++++.|+..+.+..+++.+..+.-
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG------ 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc------
Confidence 78999999874 45689999999999999988888777753 2579999999999999999998866421
Q ss_pred cccCCCCCEEEEeHHHHHHHH
Q 002183 153 VTLSPNASCLVMTTEILRGML 173 (955)
Q Consensus 153 ~~~~~~~~IlV~Tpe~L~~~l 173 (955)
....+.|+|...|...+
T Consensus 74 ----~~~~v~v~TfHs~a~~i 90 (664)
T TIGR01074 74 ----EARGLTISTFHTLGLDI 90 (664)
T ss_pred ----ccCCeEEEeHHHHHHHH
Confidence 12468899999886544
No 256
>PRK05973 replicative DNA helicase; Provisional
Probab=94.91 E-value=0.15 Score=53.67 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=42.1
Q ss_pred HHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHh
Q 002183 87 CLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 87 ~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
-+..|.-++|.|++|+|||..++-.+.....+|.+++|++---. ..|+.+++...
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHc
Confidence 34677889999999999999888777777777889999875433 56666666654
No 257
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.15 Score=57.57 Aligned_cols=119 Identities=19% Similarity=0.201 Sum_probs=62.2
Q ss_pred CCHHHHHHHHH-----H--hcCCcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEE-ccChhhHHHHHHHHHHhcCCe
Q 002183 77 LDPFQRVSVAC-----L--ERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYT-SPLKALSNQKYRELHQEFKDV 146 (955)
Q Consensus 77 l~~~Q~~ai~~-----l--~~g~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l-~PtkaLa~Q~~~~l~~~~~~v 146 (955)
-+.-|.+.+.. + ....++++.++||+|||.+.-+.+-+.... +.-++|+ +..-.=..|++..+...++
T Consensus 21 ~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~-- 98 (366)
T COG1474 21 HREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG-- 98 (366)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC--
Confidence 45556555433 2 233579999999999999987765554433 2214444 2222223445555554443
Q ss_pred eEEecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh
Q 002183 147 GLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (955)
Q Consensus 147 g~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~ 209 (955)
+-+..-..+.+.+. .+...-......-+||+||++.|.+... ..+..++..
T Consensus 99 ----------~~p~~g~~~~~~~~-~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~ 149 (366)
T COG1474 99 ----------KVPLTGDSSLEILK-RLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRA 149 (366)
T ss_pred ----------CCCCCCCchHHHHH-HHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhh
Confidence 11122222333322 2222111234556899999999997643 444444433
No 258
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.87 E-value=0.11 Score=64.51 Aligned_cols=131 Identities=20% Similarity=0.174 Sum_probs=89.5
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHh------------------cCCeEEEEccChhhHHHHHHHHHHhcC---Cee
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFR------------------DKQRVIYTSPLKALSNQKYRELHQEFK---DVG 147 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~------------------~~~~vl~l~PtkaLa~Q~~~~l~~~~~---~vg 147 (955)
..|+.++++-..|.|||..-.......+. .-+-+|+++|. ++-.||+.++..-.+ .|-
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~ 450 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVL 450 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEE
Confidence 34678899999999999876554443321 12458999996 899999999988766 334
Q ss_pred EEecccccC-------CCCCEEEEeHHHHHHHHhcCC------------------ccCCccc--eEEEEccccCCCCCCh
Q 002183 148 LMTGDVTLS-------PNASCLVMTTEILRGMLYRGS------------------EVLKEVA--WVIFDEIHYMKDRERG 200 (955)
Q Consensus 148 ~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~------------------~~l~~l~--~vIiDEaH~l~d~~rg 200 (955)
+.-|-.... -++|||++|+.+|++-++... ..+-.+. -|++|||+++-.. .
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess--s 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS--S 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--H
Confidence 444432221 278999999999998765431 1111222 3899999988753 5
Q ss_pred HHHHHHHHhCCCcceEEEecccc
Q 002183 201 VVWEESIIFLPPAIKMVFLSATM 223 (955)
Q Consensus 201 ~~~~~ii~~l~~~~~~v~lSAT~ 223 (955)
....+.+.+|+ .+...+.|+|+
T Consensus 529 S~~a~M~~rL~-~in~W~VTGTP 550 (1394)
T KOG0298|consen 529 SAAAEMVRRLH-AINRWCVTGTP 550 (1394)
T ss_pred HHHHHHHHHhh-hhceeeecCCc
Confidence 55566666665 46789999995
No 259
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.86 E-value=0.33 Score=56.50 Aligned_cols=129 Identities=15% Similarity=0.171 Sum_probs=65.8
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHH-hc-CCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEE
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAF-RD-KQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVM 164 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~-~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~ 164 (955)
..|+.+.+++|||+|||..+........ .. +.++.++. +.+.-+.++.+.+... .|+.. ..+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~i---Lgv~v----------~~a~ 414 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQ---LGIAV----------HEAD 414 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcc---cCcee----------EecC
Confidence 4567888999999999987654333332 22 34454433 3344444333333221 11100 0122
Q ss_pred eHHHHHHHHhcCCccCCccceEEEEccccCCCCCC-hHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhh
Q 002183 165 TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER-GVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHL 236 (955)
Q Consensus 165 Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~r-g~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~ 236 (955)
+++.+...+.. +.+.++||||.+-+...... ...+.. +........++.++++.. ..++.+.+..+
T Consensus 415 d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~-L~aa~~~a~lLVLpAtss-~~Dl~eii~~f 481 (559)
T PRK12727 415 SAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNW-LRAARQVTSLLVLPANAH-FSDLDEVVRRF 481 (559)
T ss_pred cHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHH-HHHhhcCCcEEEEECCCC-hhHHHHHHHHH
Confidence 45556655543 45689999999976532110 111111 122223355788888864 34444555443
No 260
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.81 E-value=0.2 Score=60.95 Aligned_cols=93 Identities=20% Similarity=0.308 Sum_probs=47.4
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHh---c----CCeEEEEccCh-hhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEe
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFR---D----KQRVIYTSPLK-ALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMT 165 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~---~----~~~vl~l~Ptk-aLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~T 165 (955)
++|.|+||+|||++.-..+-..-. . ...++|+--.. .=..+.+..+...+. |.. + .--..+
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~------g~~---P--~~GlsS 852 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLF------NKK---P--PNALNS 852 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHc------CCC---C--CccccH
Confidence 469999999999987765433211 1 13456662211 223344444443221 110 1 101123
Q ss_pred HHHHHHHHhcCCccCCccceEEEEccccCCCC
Q 002183 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR 197 (955)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~ 197 (955)
-+.|..+..........+.+||+||+|++...
T Consensus 853 ~evLerLF~~L~k~~r~v~IIILDEID~L~kK 884 (1164)
T PTZ00112 853 FKILDRLFNQNKKDNRNVSILIIDEIDYLITK 884 (1164)
T ss_pred HHHHHHHHhhhhcccccceEEEeehHhhhCcc
Confidence 33333333222222345679999999999864
No 261
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.79 E-value=0.11 Score=53.44 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
.+++..+|+|.|||..|.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 4799999999999997754
No 262
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.79 E-value=0.21 Score=55.03 Aligned_cols=102 Identities=12% Similarity=0.123 Sum_probs=57.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE-ccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT-SPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l-~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (955)
.++.+++.||+|+|||..+..........|..+.|+ +| .|..+. +..+.+ .+.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~--~l~~~l----k~~~~~------------------~~~~~ 210 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP--EFIREL----KNSISD------------------GSVKE 210 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH--HHHHHH----HHHHhc------------------CcHHH
Confidence 356899999999999998765444555667666555 34 344443 332210 02222
Q ss_pred HHHHHhcCCccCCccceEEEEccccC--CCCCChHHHHHHHHh-CCCcceEEEeccc
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYM--KDRERGVVWEESIIF-LPPAIKMVFLSAT 222 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l--~d~~rg~~~~~ii~~-l~~~~~~v~lSAT 222 (955)
..+ .+.+++++||||...- .+|.+...+..++.. .....++++.|--
T Consensus 211 ~l~-------~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 211 KID-------AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HHH-------HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 221 2568899999999754 333333344444432 2345566666543
No 263
>PTZ00293 thymidine kinase; Provisional
Probab=94.76 E-value=0.13 Score=52.78 Aligned_cols=87 Identities=11% Similarity=0.057 Sum_probs=53.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (955)
|.-.++.+|.+||||.-.+-.+......+.+++++-|... ..+...+.+..-......+ +.|....-+.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~D----------tR~~~~~~I~Sh~g~~~~a-~~v~~~~e~~ 72 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKD----------TRYSDEQNISSHDKQMLKA-IKVSKLKEVL 72 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEeccc----------ccCCCCCcEEecCCCccee-EEcCCHHHHH
Confidence 4556889999999998777777777777899999999742 1231111111111111222 4444433333
Q ss_pred HHHhcCCccCCccceEEEEccccCC
Q 002183 171 GMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 171 ~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
.. +.++++|.|||+|.+.
T Consensus 73 ~~-------~~~~dvI~IDEaQFf~ 90 (211)
T PTZ00293 73 ET-------AKNYDVIAIDEGQFFP 90 (211)
T ss_pred Hh-------ccCCCEEEEEchHhhH
Confidence 22 2568999999999874
No 264
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.75 E-value=0.081 Score=55.69 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=38.6
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEEccChhhHHHHHHHHHHh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
.|..++|.+++|+|||..+.--+...+.+ |.+++|++- -+-..++.+.+..+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHc
Confidence 46789999999999999888878888888 999999984 34446666666654
No 265
>PHA00729 NTP-binding motif containing protein
Probab=94.75 E-value=0.15 Score=52.87 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=59.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG 171 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~ 171 (955)
.++++.|++|+|||..+... +..+.. . ...| ..++....+...+++.+.+.+..
T Consensus 18 ~nIlItG~pGvGKT~LA~aL-a~~l~~-----~---l~~l-----------------~~~~~~~d~~~~~~fid~~~Ll~ 71 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKV-ARDVFW-----K---LNNL-----------------STKDDAWQYVQNSYFFELPDALE 71 (226)
T ss_pred EEEEEECCCCCCHHHHHHHH-HHHHHh-----h---cccc-----------------cchhhHHhcCCcEEEEEHHHHHH
Confidence 47999999999999876432 222110 0 0001 11112223345677777777776
Q ss_pred HHhcCCccCCccceEEEEcc--ccCCC-CCC--hHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhh
Q 002183 172 MLYRGSEVLKEVAWVIFDEI--HYMKD-RER--GVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICH 235 (955)
Q Consensus 172 ~l~~~~~~l~~l~~vIiDEa--H~l~d-~~r--g~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~ 235 (955)
.+..........+++|+||+ |.... |.. -.....+...+.+.++++.+... +.+++...+..
T Consensus 72 ~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~l--s~edL~~~Lr~ 138 (226)
T PHA00729 72 KIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTP--SPEDLAFYLRE 138 (226)
T ss_pred HHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecC--CHHHHHHHHHh
Confidence 66432222234678999993 33221 000 01122334444445555555444 45666666654
No 266
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.71 E-value=0.086 Score=62.12 Aligned_cols=66 Identities=14% Similarity=0.240 Sum_probs=49.1
Q ss_pred HHHHHHHHHHh-----cC----CcEEEEcCCCCchHHHHHHHHH-HHHh---cCCeEEEEccChhhHHHHHHHHHHhcC
Q 002183 79 PFQRVSVACLE-----RN----ESVLVSAHTSAGKTAVAEYAIA-MAFR---DKQRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 79 ~~Q~~ai~~l~-----~g----~~vlv~apTGsGKTl~~~~~i~-~~l~---~~~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
|||+-.+..+. .| +.+++.-|=|.|||.......+ ..+. .+..++++++++.-|...+..++....
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 67887777653 22 3588888999999986554333 3332 367899999999999999999888765
No 267
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.69 E-value=0.2 Score=68.25 Aligned_cols=122 Identities=20% Similarity=0.196 Sum_probs=76.1
Q ss_pred CCCCCHHHHHHHHHHhcC--CcEEEEcCCCCchHHHHH---HHHHHHHh-cCCeEEEEccChhhHHHHHHHHHHhcCCee
Q 002183 74 SFELDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAE---YAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFKDVG 147 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~---~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg 147 (955)
.+.|++.|++|+..+..+ +-++|+++.|+|||.+.. -++...+. .+.+++.++||-.-+.+. ++. |
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L----~~~----g 1088 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGEL----KSA----G 1088 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHH----Hhc----C
Confidence 567999999999997544 567789999999998762 23444443 477899999996655544 221 1
Q ss_pred EEecccccCCCCCEEEEeHHHHHHH--HhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC-CCcceEEEec
Q 002183 148 LMTGDVTLSPNASCLVMTTEILRGM--LYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLS 220 (955)
Q Consensus 148 ~~tGd~~~~~~~~IlV~Tpe~L~~~--l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l-~~~~~~v~lS 220 (955)
+ -..|...++.- .+..........++|+||+=++.. ..+..++... +.+.++|++-
T Consensus 1089 ~-------------~a~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEasMv~~----~~~~~l~~~~~~~~ak~vlvG 1147 (1960)
T TIGR02760 1089 V-------------QAQTLDSFLTDISLYRNSGGDFRNTLFILDESSMVSN----FQLTHATELVQKSGSRAVSLG 1147 (1960)
T ss_pred C-------------chHhHHHHhcCcccccccCCCCcccEEEEEccccccH----HHHHHHHHhccCCCCEEEEeC
Confidence 1 01233333210 011112244568999999998873 3455555543 3456777664
No 268
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.68 E-value=0.67 Score=49.90 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=71.8
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc--Ch-hhHHHHHHHHHHhcCCeeEEecccccCCCCCEEE-Ee
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP--LK-ALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLV-MT 165 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P--tk-aLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV-~T 165 (955)
.+..+.+.+++|+|||..+.........++.++.+++- .+ +...|+. .+.... +.++.. .+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~----~~~~~~-----------~~~~~~~~~ 138 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ----DYVKTI-----------GFEVIAVRD 138 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH----HHhhhc-----------CceEEecCC
Confidence 55788999999999999876554444445555655443 22 4444443 222211 122222 35
Q ss_pred HHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHH---HhCCCcceEEEeccccCChHHHHHHHhhh
Q 002183 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESI---IFLPPAIKMVFLSATMSNATQFAEWICHL 236 (955)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii---~~l~~~~~~v~lSAT~~n~~~~~~~l~~~ 236 (955)
++.+...+..-. ...+.++||+|-+=+.... ...++++. ....+..-++.+|||.. ..+..+++..+
T Consensus 139 ~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~--~~~l~el~~~~~~~~~~~~~LVl~a~~~-~~d~~~~~~~f 208 (270)
T PRK06731 139 EAAMTRALTYFK-EEARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPDYICLTLSASMK-SKDMIEIITNF 208 (270)
T ss_pred HHHHHHHHHHHH-hcCCCCEEEEECCCCCcCC--HHHHHHHHHHHhhhCCCeEEEEEcCccC-HHHHHHHHHHh
Confidence 666665543211 1236799999999665321 33344443 33344445778999974 33455666654
No 269
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.66 E-value=0.29 Score=54.38 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHhc-C---CcEEEEcCCCCchHHHHHHHH
Q 002183 77 LDPFQRVSVACLER-N---ESVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 77 l~~~Q~~ai~~l~~-g---~~vlv~apTGsGKTl~~~~~i 112 (955)
+.|||...+..+.. | +..++++|.|.|||..+..-+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A 43 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLA 43 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHH
Confidence 46888888887643 3 358899999999998775543
No 270
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.65 E-value=0.051 Score=61.12 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=37.3
Q ss_pred CCCchhhhhcCCCCCCHHHHHH--------HHHHhcCCcEEEEcCCCCchHHHHHHHHHH-HHhcC
Q 002183 63 PVYNGEMAKTYSFELDPFQRVS--------VACLERNESVLVSAHTSAGKTAVAEYAIAM-AFRDK 119 (955)
Q Consensus 63 ~~~~~~~~~~~~f~l~~~Q~~a--------i~~l~~g~~vlv~apTGsGKTl~~~~~i~~-~l~~~ 119 (955)
..|..-+....||+|..+-.++ ++.+.++.|++..+|+|+|||.+|.---.. ++..|
T Consensus 173 dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG 238 (449)
T TIGR02688 173 EEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG 238 (449)
T ss_pred HHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC
Confidence 3355666666788765442211 256689999999999999999776542222 34444
No 271
>PF13871 Helicase_C_4: Helicase_C-like
Probab=94.62 E-value=0.044 Score=58.57 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=51.8
Q ss_pred HHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 409 LVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 409 ~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
..-+.|.+|...|+|-+++.+.||.+.+-.-+-+..+.....-..|+++...+|..||+.|.|+...-.-.++.++-
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 34567999999999999999999999764222211111000112389999999999999999986443333334443
No 272
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.61 E-value=0.55 Score=53.30 Aligned_cols=122 Identities=13% Similarity=0.095 Sum_probs=66.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHH-HHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~-~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (955)
..+++++|||+|||..+.--+.. ....|.++.++. +.++.+.++.+.+.+..+ +.+ +.+..+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lg-vp~------------~~~~~~~~ 290 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMG-MPF------------YPVKDIKK 290 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcC-CCe------------eehHHHHH
Confidence 44788999999999877654443 345666664443 446666665555544332 111 01111233
Q ss_pred HHHHHhcCCccCCccceEEEEccccCCCCCChHHHHH---HHHhC---CCcceEEEeccccCChHHHHHHHh
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEE---SIIFL---PPAIKMVFLSATMSNATQFAEWIC 234 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~---ii~~l---~~~~~~v~lSAT~~n~~~~~~~l~ 234 (955)
+...+. -.+.++||||=+-+.... ...+++ ++... .+.-.++.+|||.... +..+.+.
T Consensus 291 l~~~l~-----~~~~D~VLIDTaGr~~rd--~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~-~~~~~~~ 354 (432)
T PRK12724 291 FKETLA-----RDGSELILIDTAGYSHRN--LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH-HTLTVLK 354 (432)
T ss_pred HHHHHH-----hCCCCEEEEeCCCCCccC--HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH-HHHHHHH
Confidence 333332 146789999987665321 233333 33332 1234678899998642 3344444
No 273
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.61 E-value=0.17 Score=59.01 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=59.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHh---cCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~---~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (955)
..+++.|++|+|||... .++...+. .+.+++|+.+ ..+.++....+.... .+.+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~~--------------------~~~~~ 199 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKTH--------------------KEIEQ 199 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHhh--------------------hHHHH
Confidence 35889999999999765 45555442 4678888776 456666555543210 11222
Q ss_pred HHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHH---HHhC-CCcceEEEeccccC
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFL-PPAIKMVFLSATMS 224 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~i---i~~l-~~~~~~v~lSAT~~ 224 (955)
+.. .+.+.+++|+||+|.+... ....+++ +..+ ..+.|+|+.|-..|
T Consensus 200 ~~~-------~~~~~dvLiIDDiq~l~~k--~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 200 FKN-------EICQNDVLIIDDVQFLSYK--EKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred HHH-------HhccCCEEEEeccccccCC--HHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 221 2457789999999988643 2222222 2222 33456666655544
No 274
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.53 E-value=0.092 Score=50.75 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=53.8
Q ss_pred eecCCCCHHHHHHHHHHHhcCCc---cEEEEccc--ccccCCCCCc---EEEEecceeccCCC-----------------
Q 002183 397 VHHSGLLPVIKELVELLFQEGLV---KALFATET--FAMGLNMPAK---TVVFTAVKKWDGDS----------------- 451 (955)
Q Consensus 397 ~~H~~l~~~~R~~v~~~F~~g~i---~VLvaT~~--la~Gidip~~---~vVi~~~~~~d~~~----------------- 451 (955)
++.-+..+.+...+++.|++..- .||+++.- +++|||+|+- .|||...+ |-...
T Consensus 23 i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP-fp~~~d~~~~~~~~~~~~~~~~ 101 (142)
T smart00491 23 VFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP-FPNPDSPILRARLEYLDEKGGI 101 (142)
T ss_pred EEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC-CCCCCCHHHHHHHHHHHHhcCC
Confidence 34433434455778888987543 59999988 9999999983 45554443 21110
Q ss_pred --C----cccCHHHHHHHhccCCCCCCCCceEEEEEe
Q 002183 452 --H----RYIGSGEYIQMSGRAGRRGKDDRGICIIMV 482 (955)
Q Consensus 452 --~----~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~ 482 (955)
+ .+.......|.+||+-|...| .|.++++-
T Consensus 102 ~~~~~~~~~~a~~~~~Qa~GR~iR~~~D-~g~i~l~D 137 (142)
T smart00491 102 RPFDEVYLFDAMRALAQAIGRAIRHKND-YGVVVLLD 137 (142)
T ss_pred CcHHHHHHHHHHHHHHHHhCccccCccc-eEEEEEEe
Confidence 0 011234678999999998865 78776663
No 275
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.52 E-value=0.12 Score=54.55 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=39.3
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQ 141 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~ 141 (955)
..|..+++.+++|+|||..+...+...+.++.+++|++.. +-..|..+.+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e-~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ-LTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHH
Confidence 5578899999999999998766666666788899999844 344555555544
No 276
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.45 E-value=0.32 Score=56.57 Aligned_cols=102 Identities=16% Similarity=0.259 Sum_probs=55.2
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHH-hc--CCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAF-RD--KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l-~~--~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (955)
..+++.||+|+|||..+. ++...+ .. +.+++|+... .+.++....+.. + +.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~~-~f~~~~~~~~~~---------~-------------~~~~ 186 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITSE-KFLNDLVDSMKE---------G-------------KLNE 186 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEHH-HHHHHHHHHHhc---------c-------------cHHH
Confidence 368999999999998764 343333 22 4678888653 344443333321 0 1223
Q ss_pred HHHHHhcCCccCCccceEEEEccccCCCCCC-hHHHHHHHHhC-CCcceEEEecccc
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRER-GVVWEESIIFL-PPAIKMVFLSATM 223 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~r-g~~~~~ii~~l-~~~~~~v~lSAT~ 223 (955)
+...+. .+.+++++||+|.+.+... ...+..++..+ ..+.++|+.|-..
T Consensus 187 f~~~~~------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~ 237 (440)
T PRK14088 187 FREKYR------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_pred HHHHHH------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 332221 2578999999998875421 11232333332 2344555554433
No 277
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.44 E-value=0.15 Score=63.49 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC----CeEEEEccChhhHHHHHHHHHHhcCCeeEEec
Q 002183 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK----QRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~----~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tG 151 (955)
.|+|-|++|+.. ...+++|.|..|||||.+...-|...+..+ .++++++-|+..+.....++.+..+.
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~------ 75 (726)
T TIGR01073 4 HLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP------ 75 (726)
T ss_pred ccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc------
Confidence 389999999975 346799999999999999888888877542 47999999999999998888876542
Q ss_pred ccccCCCCCEEEEeHHHHHHHH
Q 002183 152 DVTLSPNASCLVMTTEILRGML 173 (955)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l 173 (955)
....+.|+|...+...+
T Consensus 76 -----~~~~~~i~TFHs~~~~i 92 (726)
T TIGR01073 76 -----VAEDIWISTFHSMCVRI 92 (726)
T ss_pred -----ccCCcEEEcHHHHHHHH
Confidence 12467899998876543
No 278
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.42 E-value=0.32 Score=55.28 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=18.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIA 113 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~ 113 (955)
.++++.||+|+|||.+......
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~ 62 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMK 62 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999988755443
No 279
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.34 E-value=0.16 Score=49.81 Aligned_cols=127 Identities=16% Similarity=0.048 Sum_probs=72.0
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc--CCCCCEEEEeHHHH-
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL--SPNASCLVMTTEIL- 169 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~--~~~~~IlV~Tpe~L- 169 (955)
-+.|-.++|.|||.++.--.+.+...|.+|+++.=.|.-...=...+-+.++.+-+...+... ... + ..+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~-~----~~~~~~ 78 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTE-N----DEEDIA 78 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCC-C----hHHHHH
Confidence 366778889999999988888888999999996555542111112223333444444332211 110 0 11211
Q ss_pred --HHHHhc--CCccCCccceEEEEccccCCCCCC--hHHHHHHHHhCCCcceEEEeccccC
Q 002183 170 --RGMLYR--GSEVLKEVAWVIFDEIHYMKDRER--GVVWEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 170 --~~~l~~--~~~~l~~l~~vIiDEaH~l~d~~r--g~~~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
...+.. ......++++||+||+=+..+.+. ...+.+++...|++.-+|+.+-.+|
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 111111 111235789999999987754432 2234445666677777777777766
No 280
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.25 E-value=0.39 Score=53.02 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHH----hcCC---cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHH-hcCCeeE
Q 002183 77 LDPFQRVSVACL----ERNE---SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQ-EFKDVGL 148 (955)
Q Consensus 77 l~~~Q~~ai~~l----~~g~---~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~-~~~~vg~ 148 (955)
++|||..++..+ .+|+ ..++.+|.|.||+..+..-+...+-.+... .+. -.-.+.+.. -.+++-.
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~---~~~----c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDP---AAA----QRTRQLIAAGTHPDLQL 77 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCC---CCc----chHHHHHhcCCCCCEEE
Confidence 778999988776 2443 588999999999987755433333222110 000 000111111 1234444
Q ss_pred Eeccc---ccCCCCCEEEEeHHHHHHHH---hcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC---CCcceEEEe
Q 002183 149 MTGDV---TLSPNASCLVMTTEILRGML---YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFL 219 (955)
Q Consensus 149 ~tGd~---~~~~~~~IlV~Tpe~L~~~l---~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l---~~~~~~v~l 219 (955)
+.... .......| +.+.++.+. +..+ .....+++|||+||.|... .-..+++.+ |+++.+|++
T Consensus 78 i~~~p~~~~~k~~~~I---~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~~----AaNaLLKtLEEPp~~~~fiL~ 149 (319)
T PRK08769 78 VSFIPNRTGDKLRTEI---VIEQVREISQKLALTP-QYGIAQVVIVDPADAINRA----ACNALLKTLEEPSPGRYLWLI 149 (319)
T ss_pred EecCCCcccccccccc---cHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCHH----HHHHHHHHhhCCCCCCeEEEE
Confidence 42100 00001122 234444433 3222 2457899999999999742 233334333 456666666
Q ss_pred cc
Q 002183 220 SA 221 (955)
Q Consensus 220 SA 221 (955)
|.
T Consensus 150 ~~ 151 (319)
T PRK08769 150 SA 151 (319)
T ss_pred EC
Confidence 64
No 281
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.25 E-value=0.24 Score=53.96 Aligned_cols=84 Identities=15% Similarity=0.181 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhc-C-CeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRD-K-QRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~-~-~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (955)
+..+++++|||+|||....--+.....+ + .+|.++. |.+.-+.++...+.+..+ +. -..+.++
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~-~p------------~~~~~~~ 260 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILG-VP------------VKVARDP 260 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhC-Cc------------eeccCCH
Confidence 4568889999999998765433333332 3 4554443 334444444444544322 00 0112356
Q ss_pred HHHHHHHhcCCccCCccceEEEEcc
Q 002183 167 EILRGMLYRGSEVLKEVAWVIFDEI 191 (955)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vIiDEa 191 (955)
..+...+.. +.+.++|+||.+
T Consensus 261 ~~l~~~l~~----~~~~d~vliDt~ 281 (282)
T TIGR03499 261 KELRKALDR----LRDKDLILIDTA 281 (282)
T ss_pred HHHHHHHHH----ccCCCEEEEeCC
Confidence 666655543 346789999975
No 282
>PF13173 AAA_14: AAA domain
Probab=94.19 E-value=0.39 Score=45.48 Aligned_cols=35 Identities=11% Similarity=0.298 Sum_probs=23.6
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
+++.+++.||.|+|||....-.+.... ...+++|+
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi 35 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYI 35 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc-ccccceee
Confidence 356789999999999987654443332 34455555
No 283
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.14 E-value=0.26 Score=53.17 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=17.6
Q ss_pred CcEEEEcCCCCchHHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i 112 (955)
.++++.+|+|+|||.++-...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 578999999999999875543
No 284
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.11 E-value=0.47 Score=51.33 Aligned_cols=119 Identities=12% Similarity=0.186 Sum_probs=66.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeH-HH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT-EI 168 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp-e~ 168 (955)
+-+++++|+|+|||.++.-........|.+++++. +.+.-+.+....+.+..+ +.++...... -| ..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~-i~~~~~~~~~---------dp~~~ 142 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG-VDVIKQKEGA---------DPAAV 142 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC-eEEEeCCCCC---------CHHHH
Confidence 45778899999999865544344445566776654 456555666666666544 3333322211 12 11
Q ss_pred HHHHHhcCCccCCccceEEEEccccCCCCCChHH---HHHHHHhCC------CcceEEEeccccC
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVV---WEESIIFLP------PAIKMVFLSATMS 224 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~---~~~ii~~l~------~~~~~v~lSAT~~ 224 (955)
....+.. ...+++++||+|=+-+.... ... +..+....+ ++-.++.++||..
T Consensus 143 ~~~~l~~--~~~~~~D~ViIDT~G~~~~d--~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~ 203 (272)
T TIGR00064 143 AFDAIQK--AKARNIDVVLIDTAGRLQNK--VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG 203 (272)
T ss_pred HHHHHHH--HHHCCCCEEEEeCCCCCcch--HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC
Confidence 2222211 11356789999999766421 222 223333333 5566889999864
No 285
>PLN03025 replication factor C subunit; Provisional
Probab=94.08 E-value=0.19 Score=56.00 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCchHHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i 112 (955)
.++++.||+|+|||..+....
T Consensus 35 ~~lll~Gp~G~GKTtla~~la 55 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALA 55 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 468999999999998775443
No 286
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.08 E-value=0.2 Score=53.18 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=31.5
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEEcc
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSP 127 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l~P 127 (955)
..|+-++++|+||+|||..+.--+.....+ +.+++|++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 457789999999999998877666666655 889999983
No 287
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.92 E-value=0.051 Score=58.89 Aligned_cols=67 Identities=24% Similarity=0.322 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC--CeEEEEccChhhHHHHHHHHHHhcCCeeEEecccc
Q 002183 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK--QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT 154 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~--~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~ 154 (955)
.++-|..=+.++.++.-++..+|-|+|||..+.-....++.++ .++|.+=|- -+.+.+.|.+-||..
T Consensus 129 kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRPa-----------VEAGEklGfLPGdl~ 197 (348)
T COG1702 129 KTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRPA-----------VEAGEKLGFLPGDLR 197 (348)
T ss_pred cChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCcc-----------hhcCcccCcCCCchh
Confidence 6899999999999999999999999999999888888888765 477777782 233447788888875
No 288
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.89 E-value=0.37 Score=55.78 Aligned_cols=148 Identities=15% Similarity=0.207 Sum_probs=89.3
Q ss_pred hcCCCCCCHHHHHHHHHHh------cC----CcEEEEcCCCCchHHHHH-HHHHHHH---hcCCeEEEEccChhhHHHHH
Q 002183 71 KTYSFELDPFQRVSVACLE------RN----ESVLVSAHTSAGKTAVAE-YAIAMAF---RDKQRVIYTSPLKALSNQKY 136 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~------~g----~~vlv~apTGsGKTl~~~-~~i~~~l---~~~~~vl~l~PtkaLa~Q~~ 136 (955)
..+||++-|||+-.+.+|. .| ..+++..|-+-|||..+. +.....+ ..+..+.+++|+.+-+.+.+
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhh
Confidence 5688999999999999984 22 358999999999997654 3322222 56888999999999998888
Q ss_pred HHHHHhcCCeeEEecccccCCCCCEEEEeHHHHHH---HHhcCCcc--CCccceEEEEccccCCCCCChHHHHHHHHhC-
Q 002183 137 RELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG---MLYRGSEV--LKEVAWVIFDEIHYMKDRERGVVWEESIIFL- 210 (955)
Q Consensus 137 ~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~---~l~~~~~~--l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l- 210 (955)
...+.......-++--..+ +.+-..++.....+ .+...+.. -.+..+.|+||.|...+.+ ..+..+...+
T Consensus 136 ~~ar~mv~~~~~l~~~~~~--q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~g~~ 211 (546)
T COG4626 136 NPARDMVKRDDDLRDLCNV--QTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKGGLG 211 (546)
T ss_pred HHHHHHHHhCcchhhhhcc--ccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHhhhc
Confidence 8777654422211111111 12222222222211 11122222 2356799999999888653 4444444333
Q ss_pred -CCcceEEEeccc
Q 002183 211 -PPAIKMVFLSAT 222 (955)
Q Consensus 211 -~~~~~~v~lSAT 222 (955)
.++.++++.|..
T Consensus 212 ar~~~l~~~ITT~ 224 (546)
T COG4626 212 ARPEGLVVYITTS 224 (546)
T ss_pred cCcCceEEEEecC
Confidence 345677777753
No 289
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.86 E-value=2.2 Score=47.21 Aligned_cols=123 Identities=12% Similarity=0.114 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE-ccC-hhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT-SPL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l-~Pt-kaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (955)
+.-+.+.+|+|+|||..+.--.......+.+|+++ +.+ ++-+.++...+....+ ++.+......++ ...
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~-i~~~~~~~~~dp--------a~~ 184 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVG-VPVIAQKEGADP--------ASV 184 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcC-ceEEEeCCCCCH--------HHH
Confidence 45677899999999986554333333456666655 343 5555454555544432 444333211111 011
Q ss_pred HHHHHhcCCccCCccceEEEEccccCCCCCC-hHHHHHHHHh------CCCcceEEEeccccC
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRER-GVVWEESIIF------LPPAIKMVFLSATMS 224 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~r-g~~~~~ii~~------l~~~~~~v~lSAT~~ 224 (955)
....+... ..+++++||+|=+-++..... -..+..+... ..++-.++.++||..
T Consensus 185 v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g 245 (318)
T PRK10416 185 AFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG 245 (318)
T ss_pred HHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC
Confidence 11111111 135689999999987653211 1122222221 124456889999965
No 290
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.82 E-value=0.62 Score=56.92 Aligned_cols=126 Identities=16% Similarity=0.146 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHH-HHHHhcC-CeEEEE-ccC-hhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAI-AMAFRDK-QRVIYT-SPL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i-~~~l~~~-~~vl~l-~Pt-kaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (955)
++-+.+.+|||+|||.+...-. ......| .++.++ .-+ +.=+.++.+.+.+..+ + +-.++.+|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~g-v------------pv~~~~~~ 251 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILG-V------------PVHAVKDA 251 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCC-C------------CccccCCH
Confidence 4557889999999987655433 3323444 354443 322 3223344444544432 1 11234478
Q ss_pred HHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHH---hCCCcceEEEeccccCChHHHHHHHhhh
Q 002183 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII---FLPPAIKMVFLSATMSNATQFAEWICHL 236 (955)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~---~l~~~~~~v~lSAT~~n~~~~~~~l~~~ 236 (955)
+.+...+.. +.+.++|+||=+=+.... ....+++.. ...+...++.+|||.. ..++.+.+..+
T Consensus 252 ~~l~~al~~----~~~~D~VLIDTAGRs~~d--~~l~eel~~l~~~~~p~e~~LVLsAt~~-~~~l~~i~~~f 317 (767)
T PRK14723 252 ADLRFALAA----LGDKHLVLIDTVGMSQRD--RNVSEQIAMLCGVGRPVRRLLLLNAASH-GDTLNEVVHAY 317 (767)
T ss_pred HHHHHHHHH----hcCCCEEEEeCCCCCccC--HHHHHHHHHHhccCCCCeEEEEECCCCc-HHHHHHHHHHH
Confidence 877776653 446689999999766432 223333322 2345566889999963 44555555444
No 291
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.79 E-value=0.094 Score=52.87 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=31.9
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK 135 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~ 135 (955)
+.+++++++.+|||+|||..+...+..++..|..|+|+. ..+|.+..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-ASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-HHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-cCceeccc
Confidence 467889999999999999988766666777787787764 34555543
No 292
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.76 E-value=0.092 Score=61.28 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHH----HhcCCcEEEEcCCCCchHHHHHHHHHHHHh
Q 002183 73 YSFELDPFQRVSVAC----LERNESVLVSAHTSAGKTAVAEYAIAMAFR 117 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~----l~~g~~vlv~apTGsGKTl~~~~~i~~~l~ 117 (955)
|||+|+.+|.+-+.. |..|+-.|.-+|||+|||+.-.-+.+..|.
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 678899999988755 588999999999999999987777666653
No 293
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.74 E-value=0.32 Score=56.58 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=56.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEE---eH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVM---TT 166 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~---Tp 166 (955)
.|.-+++.+++|+|||......+.....++.+++|++-. +-..|+..+...+.-+.. ++.+. ..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~rlg~~~~------------~l~~~~e~~l 145 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAERLGLPSD------------NLYLLAETNL 145 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHHHcCCChh------------cEEEeCCCCH
Confidence 456789999999999997766655555668899999854 444566555544321110 12222 22
Q ss_pred HHHHHHHhcCCccCCccceEEEEccccCCC
Q 002183 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
+.+...+.. .+.++||+|+++.+..
T Consensus 146 ~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 146 EAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 444444432 2568999999997754
No 294
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.68 E-value=0.23 Score=54.11 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
+.++++.+|+|+|||.+|..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 45799999999999998743
No 295
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.68 E-value=0.23 Score=55.15 Aligned_cols=40 Identities=8% Similarity=0.008 Sum_probs=23.8
Q ss_pred CccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEec
Q 002183 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 181 ~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lS 220 (955)
...++|||||+|.+........+..++...+.+.++|+.|
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 3567999999999843322222333344455666666644
No 296
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.67 E-value=0.12 Score=54.63 Aligned_cols=52 Identities=12% Similarity=0.224 Sum_probs=39.8
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
.|..+++.+++|+|||..+...+...+.++.+++|++=-.. ..+..+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHHC
Confidence 45778999999999999888777777788999999886543 34555555553
No 297
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.65 E-value=0.13 Score=62.10 Aligned_cols=36 Identities=19% Similarity=0.517 Sum_probs=24.0
Q ss_pred CccceEEEEccccCCCCCChHHHHHHHHhC---CCcceEEEec
Q 002183 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (955)
Q Consensus 181 ~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l---~~~~~~v~lS 220 (955)
...+++||||+|+|... .+..+++.+ ++++.+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~----A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH----AFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHH----HHHHHHHHHHhcCCCeEEEEEE
Confidence 46789999999999743 344444443 4566666655
No 298
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.65 E-value=0.67 Score=54.67 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=17.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAF 116 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l 116 (955)
.+++++|+|+|||.++.. ++..+
T Consensus 38 a~Lf~GppGtGKTTlA~~-lA~~l 60 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL-IAMAV 60 (504)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHH
Confidence 359999999999998754 34443
No 299
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.64 E-value=0.35 Score=57.57 Aligned_cols=38 Identities=16% Similarity=0.385 Sum_probs=26.1
Q ss_pred CCccceEEEEccccCCCCCChHHHHHHHHhC---CCcceEEEecc
Q 002183 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSA 221 (955)
Q Consensus 180 l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l---~~~~~~v~lSA 221 (955)
....+++||||+|+|.. ..++.+++.+ +.++.+|+.|-
T Consensus 122 ~gr~KViIIDEah~Ls~----~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTN----HAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCH----HHHHHHHHhhccCCCCceEEEEeC
Confidence 45688999999999974 3345555554 45676766653
No 300
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.61 E-value=0.24 Score=55.95 Aligned_cols=105 Identities=17% Similarity=0.257 Sum_probs=57.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCC--eEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQ--RVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~--~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (955)
..-+++.||+|+|||-.....-...+..++ +++|++.-.- .+.....+++ .+.+.
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f-~~~~v~a~~~----------------------~~~~~ 169 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDF-TNDFVKALRD----------------------NEMEK 169 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHH-HHHHHHHHHh----------------------hhHHH
Confidence 456899999999999876555555554444 6666654321 1111111111 01111
Q ss_pred HHHHHhcCCccCCccceEEEEccccCCCCCCh-HHHHHHHHhCC-CcceEEEeccccCCh
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERG-VVWEESIIFLP-PAIKMVFLSATMSNA 226 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg-~~~~~ii~~l~-~~~~~v~lSAT~~n~ 226 (955)
+. ... ++++++||.++.+.....- ..+-.++..+. .+.|+|+.|...|..
T Consensus 170 Fk-------~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 170 FK-------EKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred HH-------Hhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 11 124 7889999999998764211 12222333332 344888888777643
No 301
>PHA00350 putative assembly protein
Probab=93.61 E-value=0.51 Score=53.36 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=26.8
Q ss_pred EEEEcCCCCchHHHHHH-HHHHHHhcCCeEEEEccChhhH
Q 002183 94 VLVSAHTSAGKTAVAEY-AIAMAFRDKQRVIYTSPLKALS 132 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~-~i~~~l~~~~~vl~l~PtkaLa 132 (955)
.++.+..|||||+.+.. -|..+++.|. .+|+ ...-|-
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR-~V~T-NI~Gl~ 41 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR-KVIT-NIPGLN 41 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC-EEEE-CCCCCC
Confidence 57899999999998886 5777888885 3343 554444
No 302
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.59 E-value=0.17 Score=58.27 Aligned_cols=122 Identities=11% Similarity=0.165 Sum_probs=76.5
Q ss_pred cEEEEcCCCCchHHHHHHHHHH-HHh--cCCeEEEEccChh-hHHHHHHHHHHhcCCeeEE---e-ccc----ccCC-CC
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAM-AFR--DKQRVIYTSPLKA-LSNQKYRELHQEFKDVGLM---T-GDV----TLSP-NA 159 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~-~l~--~~~~vl~l~Ptka-La~Q~~~~l~~~~~~vg~~---t-Gd~----~~~~-~~ 159 (955)
-.++.+..|||||.+....++. ++. .+.+++++-|+.. |..-++.++.......|+. . .+. .... +.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g~ 82 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTGK 82 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCCe
Confidence 3578999999999887765544 444 5788999999876 7778888888765543321 1 111 1111 22
Q ss_pred CEEEEe----HHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCC--CcceEEEeccccCCh
Q 002183 160 SCLVMT----TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP--PAIKMVFLSATMSNA 226 (955)
Q Consensus 160 ~IlV~T----pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~--~~~~~v~lSAT~~n~ 226 (955)
.|++.. |+.+. ....+.++.+|||..+. ...|.+++..+. ...+.+++|.||++.
T Consensus 83 ~i~f~g~~d~~~~ik--------~~~~~~~~~idEa~~~~----~~~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 83 KFIFKGLNDKPNKLK--------SGAGIAIIWFEEASQLT----FEDIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred EEEeecccCChhHhh--------CcceeeeehhhhhhhcC----HHHHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 333322 22221 12346899999999885 346777776664 222358899998754
No 303
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.58 E-value=0.22 Score=57.52 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.5
Q ss_pred cEEEEcCCCCchHHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i 112 (955)
.++++||.|+|||.++-+.+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999999875543
No 304
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.58 E-value=0.3 Score=49.33 Aligned_cols=131 Identities=15% Similarity=0.028 Sum_probs=72.3
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccc--cCCCCCEEEEeH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT--LSPNASCLVMTT 166 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~--~~~~~~IlV~Tp 166 (955)
.....+.|..++|-|||.+++--.+.++..|.+|+++-=.|--..+=...+-+..+.+-+...+.. +.... ..
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~-----~~ 94 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQD-----RE 94 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCC-----cH
Confidence 355689999999999999998888899999999999876664321111222222333433332221 11100 11
Q ss_pred HH---HHHHHhcCCc--cCCccceEEEEccccCCCCCChH--HHHHHHHhCCCcceEEEeccccC
Q 002183 167 EI---LRGMLYRGSE--VLKEVAWVIFDEIHYMKDRERGV--VWEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 167 e~---L~~~l~~~~~--~l~~l~~vIiDEaH~l~d~~rg~--~~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
+. ..+.+..... .-..+++||+||+=...+.+.-. .+..++...|+..-+|+.--.+|
T Consensus 95 e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 95 RDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11 1111111111 12578999999998776543221 22234444566665665554444
No 305
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.55 E-value=0.16 Score=56.07 Aligned_cols=55 Identities=22% Similarity=0.324 Sum_probs=41.3
Q ss_pred CCHHHHHHHHH-HhcCCcEEEEcCCCCchHHHHHHHHHHHH---hcCCeEEEEccChhhH
Q 002183 77 LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAF---RDKQRVIYTSPLKALS 132 (955)
Q Consensus 77 l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~~~i~~~l---~~~~~vl~l~PtkaLa 132 (955)
+++.|.+.+.. +..+.+++++++||||||... .+++..+ ....+++++-.+.+|.
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~rivtIEd~~El~ 191 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTERVFIIEDTGEIQ 191 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCceEEEEcCCCccc
Confidence 67888888865 577889999999999999654 4454443 3456888888887773
No 306
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.54 E-value=0.31 Score=48.30 Aligned_cols=118 Identities=12% Similarity=0.079 Sum_probs=58.4
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHH-HhcCCeeEEecccccCCCCCEEEEeHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELH-QEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~-~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (955)
+.+|+.+|.|+||+..+..-+...+....... .+....-+. .+. ...+++..+..+..- -.| .-+.++
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c~~c~~c~----~~~~~~~~d~~~~~~~~~~---~~i---~i~~ir 88 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARALLCSNPNED-PCGECRSCR----RIEEGNHPDFIIIKPDKKK---KSI---KIDQIR 88 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT---SSSHHHH----HHHTT-CTTEEEEETTTSS---SSB---SHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCHHHH----HHHhccCcceEEEeccccc---chh---hHHHHH
Confidence 45799999999999887655444433221100 111111111 222 223355555433210 122 224444
Q ss_pred HHHhcC--CccCCccceEEEEccccCCCCCChHHHHHHH---HhCCCcceEEEeccccC
Q 002183 171 GMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVVWEESI---IFLPPAIKMVFLSATMS 224 (955)
Q Consensus 171 ~~l~~~--~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii---~~l~~~~~~v~lSAT~~ 224 (955)
.+...- ...-...+++||||||.|.. .....++ ..-|+++.++++|-.+.
T Consensus 89 ~i~~~~~~~~~~~~~KviiI~~ad~l~~----~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 89 EIIEFLSLSPSEGKYKVIIIDEADKLTE----EAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp HHHHHCTSS-TTSSSEEEEEETGGGS-H----HHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred HHHHHHHHHHhcCCceEEEeehHhhhhH----HHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 443321 12235789999999999973 3334444 33456777777775553
No 307
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.54 E-value=0.66 Score=46.54 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=56.5
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG 171 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~ 171 (955)
.=.++.+|..||||.--+-.+......|.++++..|-. -..|+ .+.+.+-.-...+ -++|-.+..+..
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~i----------D~R~~-~~~V~Sr~G~~~~-A~~i~~~~~i~~ 72 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAI----------DTRYG-VGKVSSRIGLSSE-AVVIPSDTDIFD 72 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccc----------ccccc-cceeeeccCCccc-ceecCChHHHHH
Confidence 34688999999999976666666666789999998862 22222 2222222222223 344445555555
Q ss_pred HHhcCCccCCccceEEEEccccCCC
Q 002183 172 MLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 172 ~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
.+....... .+++|.||||+.+..
T Consensus 73 ~i~~~~~~~-~~~~v~IDEaQF~~~ 96 (201)
T COG1435 73 EIAALHEKP-PVDCVLIDEAQFFDE 96 (201)
T ss_pred HHHhcccCC-CcCEEEEehhHhCCH
Confidence 544332212 288999999998864
No 308
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.51 E-value=0.68 Score=51.63 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHhc--C---CcEEEEcCCCCchHHHHHHHH
Q 002183 78 DPFQRVSVACLER--N---ESVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 78 ~~~Q~~ai~~l~~--g---~~vlv~apTGsGKTl~~~~~i 112 (955)
+|||...+..+.. + +..++.||.|.|||..+....
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 5777777776632 2 468899999999999875443
No 309
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.49 E-value=0.16 Score=53.91 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=41.5
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
.|..++|.||+|+|||..+.-.+...+.+|.+++|++- -+-..|..+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHHh
Confidence 46789999999999999888777777788999999984 45666666666553
No 310
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.49 E-value=0.18 Score=55.65 Aligned_cols=55 Identities=16% Similarity=0.302 Sum_probs=41.6
Q ss_pred CCHHHHHHHHH-HhcCCcEEEEcCCCCchHHHHHHHHHHHH---hcCCeEEEEccChhhH
Q 002183 77 LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAF---RDKQRVIYTSPLKALS 132 (955)
Q Consensus 77 l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~~~i~~~l---~~~~~vl~l~PtkaLa 132 (955)
+++.|.+.+.. +..+.+++++++||||||... .+++..+ ..+.+++.+=.+.+|.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCcccc
Confidence 67888888765 577789999999999999865 5555555 2456788877777764
No 311
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.45 E-value=0.72 Score=53.21 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=62.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (955)
..+++++++|+|||.++.-........|.+++++. +.+.-+.++.+.+.+..+ +.+ .+.. ...+ ..+.+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~g-vp~-~~~~---~~~d----~~~i~ 166 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIG-VPF-YGDP---DNKD----AVEIA 166 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcC-CcE-EecC---CccC----HHHHH
Confidence 45788999999999877544444445566665554 234444444455544332 111 1110 0000 12334
Q ss_pred HHHHhcCCccCCccceEEEEccccCCCCCChHHHHHH---HHhCCCcceEEEeccccC
Q 002183 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 170 ~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~i---i~~l~~~~~~v~lSAT~~ 224 (955)
.+.+... .+.++||+|.+-+.... ...++++ .....++.-++.++||..
T Consensus 167 ~~al~~~----~~~DvVIIDTAGr~~~d--~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 167 KEGLEKF----KKADVIIVDTAGRHALE--EDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred HHHHHHh----hcCCEEEEECCCcccch--HHHHHHHHHHHHHhcccceeEEEecccc
Confidence 4444332 23389999999554321 2333332 233445566788888875
No 312
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.41 E-value=0.4 Score=57.72 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=23.7
Q ss_pred CCccceEEEEccccCCCCCChHHHHHHHHhC---CCcceEEEe
Q 002183 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFL 219 (955)
Q Consensus 180 l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l---~~~~~~v~l 219 (955)
....+++||||||+|.. ...+.++..+ |+++.+|+.
T Consensus 117 ~g~~KV~IIDEah~Ls~----~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSR----HSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred cCCCEEEEEechHhCCH----HHHHHHHHHHHcCCCCeEEEEe
Confidence 35678999999999974 3344444443 455556665
No 313
>CHL00181 cbbX CbbX; Provisional
Probab=93.39 E-value=0.49 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=19.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAM 114 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~ 114 (955)
+.++++.+|+|+|||.+|-.-...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999988665433
No 314
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.39 E-value=0.26 Score=53.46 Aligned_cols=53 Identities=23% Similarity=0.132 Sum_probs=36.0
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEEccChhhHHHHHHHHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQ 141 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l~PtkaLa~Q~~~~l~~ 141 (955)
+..|..+++.|+||+|||..+...+...... +.+++|++-- .-..+..+.+..
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E-~~~~~~~~r~~~ 80 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE-EPVVRTARRLLG 80 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc-cCHHHHHHHHHH
Confidence 3567889999999999998666555554444 8889998743 223444444443
No 315
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.38 E-value=0.33 Score=58.40 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=24.4
Q ss_pred CCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEec
Q 002183 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 180 l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lS 220 (955)
..+.+++||||+|+|....+ ..+...+..-+.++.+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 45778999999998874211 11223333345667777655
No 316
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.38 E-value=0.38 Score=54.01 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=20.1
Q ss_pred HhcCC---cEEEEcCCCCchHHHHHHHHHHH
Q 002183 88 LERNE---SVLVSAHTSAGKTAVAEYAIAMA 115 (955)
Q Consensus 88 l~~g~---~vlv~apTGsGKTl~~~~~i~~~ 115 (955)
+.+|+ .+++.+|+|.|||..+...+...
T Consensus 39 ~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 39 YREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred HHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 34554 58999999999998875444333
No 317
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.34 E-value=0.15 Score=60.26 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=24.5
Q ss_pred CccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEec
Q 002183 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 181 ~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lS 220 (955)
.+.+++||||||+|....+. .+..++..-|+++.+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~n-aLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFN-ALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHHH-HHHHHHhccCCCeEEEEEE
Confidence 46789999999999743211 1223334445677777655
No 318
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.32 E-value=0.5 Score=56.26 Aligned_cols=101 Identities=20% Similarity=0.313 Sum_probs=57.6
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHH-h--cCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAF-R--DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l-~--~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (955)
.+++.+++|+|||.... +|...+ . .+.+++|+.- ..+.++....+.. ...+.+
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~~~~g~~V~Yita-eef~~el~~al~~----------------------~~~~~f 371 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARRLYPGTRVRYVSS-EEFTNEFINSIRD----------------------GKGDSF 371 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHh----------------------ccHHHH
Confidence 48999999999998654 333333 2 3677877764 4555554443322 012223
Q ss_pred HHHHhcCCccCCccceEEEEccccCCCCCCh-HHHHHHHHhC-CCcceEEEeccccC
Q 002183 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRERG-VVWEESIIFL-PPAIKMVFLSATMS 224 (955)
Q Consensus 170 ~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg-~~~~~ii~~l-~~~~~~v~lSAT~~ 224 (955)
.. .+.++++||||++|.+...... ..+..++..+ ..+.++|+.|-..+
T Consensus 372 ~~-------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P 421 (617)
T PRK14086 372 RR-------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPP 421 (617)
T ss_pred HH-------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCCh
Confidence 22 2456899999999999754321 1222333333 33566776555444
No 319
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.22 E-value=0.14 Score=60.30 Aligned_cols=146 Identities=20% Similarity=0.258 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHhc--------CC--cEEEEcCCCCchHH-HHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC
Q 002183 76 ELDPFQRVSVACLER--------NE--SVLVSAHTSAGKTA-VAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~--------g~--~vlv~apTGsGKTl-~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
.++..|.+|+-...+ |+ ..|+-...|-||-- +|.+..-..|+..+++|+++-...|--+..++++....
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA 343 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGA 343 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcCC
Confidence 388899999855422 22 24554455555543 22333445667778999999999999999999998765
Q ss_pred -Ce----------eEEecccccCCCCCEEEEeHHHHHHHHhc-CC----------ccC-Ccc-ceEEEEccccCCC----
Q 002183 145 -DV----------GLMTGDVTLSPNASCLVMTTEILRGMLYR-GS----------EVL-KEV-AWVIFDEIHYMKD---- 196 (955)
Q Consensus 145 -~v----------g~~tGd~~~~~~~~IlV~Tpe~L~~~l~~-~~----------~~l-~~l-~~vIiDEaH~l~d---- 196 (955)
.+ +-+.++..-+-.--++++|+-.|..--.. +. .++ .++ ++|||||||...+
T Consensus 344 ~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~ 423 (1300)
T KOG1513|consen 344 TGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPT 423 (1300)
T ss_pred CCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccccc
Confidence 21 22334444444557899999776532211 10 000 111 6899999998654
Q ss_pred -----CCChHHHHHHHHhCCCcceEEEeccc
Q 002183 197 -----RERGVVWEESIIFLPPAIKMVFLSAT 222 (955)
Q Consensus 197 -----~~rg~~~~~ii~~l~~~~~~v~lSAT 222 (955)
...|...-++-..|| +.++|.-|||
T Consensus 424 ~~~k~TKtG~tVLdLQk~LP-~ARVVYASAT 453 (1300)
T KOG1513|consen 424 AGAKSTKTGKTVLDLQKKLP-NARVVYASAT 453 (1300)
T ss_pred cCCCcCcccHhHHHHHHhCC-CceEEEeecc
Confidence 224555556666676 5789999999
No 320
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=93.06 E-value=0.058 Score=55.24 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=20.6
Q ss_pred EEEEcCCCCchHHHHHHH-HHHHHhcCCeEEEEccChhhH
Q 002183 94 VLVSAHTSAGKTAVAEYA-IAMAFRDKQRVIYTSPLKALS 132 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~-i~~~l~~~~~vl~l~PtkaLa 132 (955)
.+++|.+|||||+-+..- +..+++.|.+|+. ....|.
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t--ni~gL~ 40 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT--NIPGLN 40 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE----TTB-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE--ccCCcc
Confidence 578999999999988776 6666666554444 544443
No 321
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.96 E-value=0.97 Score=50.04 Aligned_cols=130 Identities=8% Similarity=0.061 Sum_probs=62.7
Q ss_pred CHHHHHHHHHH----hcC---CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHH-hcCCeeEE
Q 002183 78 DPFQRVSVACL----ERN---ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQ-EFKDVGLM 149 (955)
Q Consensus 78 ~~~Q~~ai~~l----~~g---~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~-~~~~vg~~ 149 (955)
.|||...+..+ .+| +-.++.||.|.||+..+..-....+-.+....--+-.- .-.+.+.. -.+++-.+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C----~sC~~~~~g~HPD~~~i 79 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQC----HSCHLFQAGNHPDFHIL 79 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCC----HHHHHHhcCCCCCEEEE
Confidence 46676666554 343 46779999999999887554433332221100000000 01111111 11233333
Q ss_pred ecccccCCCCCEEEEeHHHHHHHHhc--CCccCCccceEEEEccccCCCCCChHHHHHHHHhC---CCcceEEEeccc
Q 002183 150 TGDVTLSPNASCLVMTTEILRGMLYR--GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSAT 222 (955)
Q Consensus 150 tGd~~~~~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l---~~~~~~v~lSAT 222 (955)
... .+..| ..+.++.+... ....-...+++|||+||.|.. .....+++.+ |+++-+++.|..
T Consensus 80 ~p~----~~~~I---~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~----~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 80 EPI----DNKDI---GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTE----AAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred ccc----cCCCC---CHHHHHHHHHHHhhccccCCceEEEEechhhhCH----HHHHHHHHHhcCCCCCeEEEEEECC
Confidence 211 01112 23444443321 112245789999999999984 3344445444 445555555543
No 322
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.92 E-value=0.61 Score=56.52 Aligned_cols=150 Identities=18% Similarity=0.150 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhc-----CCcEEEEcCCCCchHHHHHHHHHHHHh---------cCCeEEEEccChhhHHHHHHHHHHhcC
Q 002183 79 PFQRVSVACLER-----NESVLVSAHTSAGKTAVAEYAIAMAFR---------DKQRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 79 ~~Q~~ai~~l~~-----g~~vlv~apTGsGKTl~~~~~i~~~l~---------~~~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
..|+..+-.+.. -.-.|++-.-|-|||+.....++..-. .+.-.++++|+ ++..||..++.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~ 213 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTE 213 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCC
Confidence 455555544421 134789999999999976555443321 23456888886 788899999944333
Q ss_pred ----CeeEEec---ccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEE
Q 002183 145 ----DVGLMTG---DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMV 217 (955)
Q Consensus 145 ----~vg~~tG---d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v 217 (955)
.+.++.| +...-...+||++||.++.+ .+..--.+-.+|+||+|.+.+.... .....-.+. ....-
T Consensus 214 ~~~l~v~v~~gr~kd~~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq--~~~a~~~L~-a~~RW 286 (674)
T KOG1001|consen 214 EDKLSIYVYHGRTKDKSELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQ--IFKAVCQLD-AKYRW 286 (674)
T ss_pred ccceEEEEecccccccchhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchH--hhhhheeec-cceee
Confidence 2445666 11222357799999999874 1111123456899999999876433 222222222 34457
Q ss_pred EeccccC--ChHHHHHHHhhh
Q 002183 218 FLSATMS--NATQFAEWICHL 236 (955)
Q Consensus 218 ~lSAT~~--n~~~~~~~l~~~ 236 (955)
.||+|+- +..++...++..
T Consensus 287 cLtgtPiqn~~~~lysl~~fl 307 (674)
T KOG1001|consen 287 CLTGTPIQNNLDELYSLFKFL 307 (674)
T ss_pred eecCChhhhhHHHHHHHHHHh
Confidence 8888874 334555554443
No 323
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.85 E-value=0.59 Score=44.01 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=21.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccC
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Pt 128 (955)
+++.+|+|+|||..+...+... +..++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhc---cccccccccc
Confidence 5899999999999875543332 4444444444
No 324
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.81 E-value=0.27 Score=64.56 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC---CeEEEEccChhhHHHHHHHHHHhcCCeeEEeccc
Q 002183 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK---QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV 153 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~---~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~ 153 (955)
+|+-|.+||. ..+.+++|+|..|||||.+..--++..+..+ .++++++=|++.+.++..++.+......--..+.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p~~ 79 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQEPNS 79 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 6889999998 5788999999999999999877777666544 3599999999999998888877554110000000
Q ss_pred -----ccCCCCCEEEEeHHHHHHHHhcCCccCCcc--ceEEEEcccc
Q 002183 154 -----TLSPNASCLVMTTEILRGMLYRGSEVLKEV--AWVIFDEIHY 193 (955)
Q Consensus 154 -----~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l--~~vIiDEaH~ 193 (955)
....-...-|+|...+...+-+.....-++ .+=|.||...
T Consensus 80 ~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 80 KHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 011123456889887765443322111112 4456787653
No 325
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.74 E-value=0.31 Score=55.08 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=55.5
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEE---e
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVM---T 165 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~---T 165 (955)
..|.-+++.+++|+|||......+......+.+++|++-.. -..|+..+...+.-.. .++.+. .
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE-s~~qi~~Ra~rlg~~~------------~~l~l~~e~~ 146 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE-SPEQIKLRADRLGIST------------ENLYLLAETN 146 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc-CHHHHHHHHHHcCCCc------------ccEEEEccCc
Confidence 34678899999999999987766555556678999987653 3455544443321110 112222 2
Q ss_pred HHHHHHHHhcCCccCCccceEEEEccccCC
Q 002183 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
.+.+.+.+.. .+.++||||+++.+.
T Consensus 147 le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 147 LEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred HHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 3444444432 256899999999774
No 326
>PHA02244 ATPase-like protein
Probab=92.73 E-value=1.2 Score=49.73 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.1
Q ss_pred HHHHhcCCcEEEEcCCCCchHHHHHHH
Q 002183 85 VACLERNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 85 i~~l~~g~~vlv~apTGsGKTl~~~~~ 111 (955)
...+..+.++++.+|||+|||..+...
T Consensus 113 ~r~l~~~~PVLL~GppGtGKTtLA~aL 139 (383)
T PHA02244 113 AKIVNANIPVFLKGGAGSGKNHIAEQI 139 (383)
T ss_pred HHHHhcCCCEEEECCCCCCHHHHHHHH
Confidence 345688899999999999999877543
No 327
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.71 E-value=0.46 Score=56.77 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=23.3
Q ss_pred CccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEec
Q 002183 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 181 ~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lS 220 (955)
...+++||||||+|....+ ..+..++..-++++.+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEEEE
Confidence 4678999999999974321 11223333345566666644
No 328
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.67 E-value=0.12 Score=58.15 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=22.8
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHhc
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRD 118 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~ 118 (955)
+-.|+.+++.||+|+|||..+.. +...+..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I~~ 194 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAITR 194 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhhcc
Confidence 36789999999999999986544 4454433
No 329
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.56 E-value=0.5 Score=53.62 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=23.6
Q ss_pred CCccceEEEEccccCCCCCChHHHHHHHHh---CCCcceEEEec
Q 002183 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIF---LPPAIKMVFLS 220 (955)
Q Consensus 180 l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~---l~~~~~~v~lS 220 (955)
..+..++||||+|.+.+ ..++.++.. -|+++.+|+.|
T Consensus 117 ~~~~kviIIDEa~~l~~----~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSR----HSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCH----HHHHHHHHHHhcCCCCeEEEEEc
Confidence 45678999999999974 233444433 34566666654
No 330
>PRK06620 hypothetical protein; Validated
Probab=92.50 E-value=0.28 Score=51.11 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCchHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (955)
..+++.||+|+|||..+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999999765
No 331
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.37 E-value=0.47 Score=49.79 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=56.5
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcC------CeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEE
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDK------QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLV 163 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~------~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV 163 (955)
.|+-+.+.+|+|+|||..+...+......+ .+++|+..-..+..+....+...++ .-.. ... .++.+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~---~~~~--~~~--~~i~~ 90 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFG---LDPE--EVL--DNIYV 90 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhc---cchh--hhh--ccEEE
Confidence 467789999999999998877666666665 7899988765433333222222111 1000 000 12333
Q ss_pred ---EeHHHHHHHHhcCCc--cCCccceEEEEccccCC
Q 002183 164 ---MTTEILRGMLYRGSE--VLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 164 ---~Tpe~L~~~l~~~~~--~l~~l~~vIiDEaH~l~ 195 (955)
.+++.+...+..-.. .-..+++||||-+-.+.
T Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~ 127 (226)
T cd01393 91 ARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALF 127 (226)
T ss_pred EeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhh
Confidence 355555544432211 12478899999986553
No 332
>PRK08506 replicative DNA helicase; Provisional
Probab=92.37 E-value=0.5 Score=55.44 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=63.2
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCee---EEeccccc----------
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL---------- 155 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg---~~tGd~~~---------- 155 (955)
..|.-+++.|.||.|||..++-.+......|.+|+|.+.- .=..|+..++-.....+. +..|+.+.
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~ 268 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDAC 268 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 5567788999999999998877666666778888888654 345555555544322211 12232210
Q ss_pred --CCCCCEEE-----EeHHHHHHHHhcCCccCCccceEEEEccccCCC
Q 002183 156 --SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 156 --~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
-.+.++.| .|+..+++.+.+-......+++||||=.+.|..
T Consensus 269 ~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 269 DELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 01234444 255655544332111123588999999998863
No 333
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.34 E-value=0.96 Score=50.18 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.2
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
++++.||+|+|||.++...
T Consensus 40 ~~ll~G~~G~GKt~~~~~l 58 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALAL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5999999999999887543
No 334
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.34 E-value=0.35 Score=53.10 Aligned_cols=93 Identities=24% Similarity=0.287 Sum_probs=58.2
Q ss_pred CCHHHHHHHHH-HhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHHHHHHHhcCC-eeEEec
Q 002183 77 LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFKD-VGLMTG 151 (955)
Q Consensus 77 l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~~~l~~~~~~-vg~~tG 151 (955)
+++.|.+.+.. +..+.+++++++||||||... .+++..+.. +.+++++-.+.+|.- ..++ +.+.++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El~~--------~~~~~v~~~~~ 187 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTRELQC--------AAPNVVQLRTS 187 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhhcC--------CCCCEEEEEec
Confidence 55667777655 566789999999999999875 455555533 578888888877632 1122 222222
Q ss_pred ccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccc
Q 002183 152 DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIH 192 (955)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH 192 (955)
. +. .|...+.....+ .+.+++|+.|+=
T Consensus 188 ~-----~~----~~~~~~l~~aLR-----~~pD~iivGEiR 214 (299)
T TIGR02782 188 D-----DA----ISMTRLLKATLR-----LRPDRIIVGEVR 214 (299)
T ss_pred C-----CC----CCHHHHHHHHhc-----CCCCEEEEeccC
Confidence 1 11 266655543322 245799999984
No 335
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.31 E-value=0.85 Score=54.27 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=25.0
Q ss_pred cCCccceEEEEccccCCCCCChHHHHHHHHh---CCCcceEEEec
Q 002183 179 VLKEVAWVIFDEIHYMKDRERGVVWEESIIF---LPPAIKMVFLS 220 (955)
Q Consensus 179 ~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~---l~~~~~~v~lS 220 (955)
...+.+++||||+|+|... ..+.++.. .|+++.+|+.|
T Consensus 116 ~~~~~kVvIIDEad~ls~~----a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 116 TRGRFKVYIIDEVHMLSKS----AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred ccCCceEEEEcCcccCCHH----HHHHHHHHHhCCCCCEEEEEEe
Confidence 3467889999999999742 23334433 35567677665
No 336
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.30 E-value=1.7 Score=48.06 Aligned_cols=131 Identities=11% Similarity=0.101 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHH----hcC---CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHH-hcCCeeE
Q 002183 77 LDPFQRVSVACL----ERN---ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQ-EFKDVGL 148 (955)
Q Consensus 77 l~~~Q~~ai~~l----~~g---~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~-~~~~vg~ 148 (955)
+.|||...+..+ .+| +..++++|.|.||+..+...+...+-.+... --+-.-.- .+.+.. ..+++-.
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-~~Cg~C~s----C~~~~~g~HPD~~~ 78 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-EACGFCHS----CELMQSGNHPDLHV 78 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCHH----HHHHHcCCCCCEEE
Confidence 456777776655 344 3689999999999987755443333222100 00000001 111111 1224433
Q ss_pred EecccccCCCCCEEEEeHHHHHHHHhc--CCccCCccceEEEEccccCCCCCChHHHHHHHHhC---CCcceEEEeccc
Q 002183 149 MTGDVTLSPNASCLVMTTEILRGMLYR--GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSAT 222 (955)
Q Consensus 149 ~tGd~~~~~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l---~~~~~~v~lSAT 222 (955)
+..+. .+..| +.+.++.+... ........+++|||+||+|.. .....+++.+ |++.-+|++|..
T Consensus 79 i~p~~---~~~~I---~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~----~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 79 IKPEK---EGKSI---TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE----SASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred EecCc---CCCcC---CHHHHHHHHHHHhhCcccCCceEEEecchhhhCH----HHHHHHHHHhcCCCCCeEEEEEECC
Confidence 32210 01122 33444443221 122346789999999999973 3344455544 445556655544
No 337
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.29 E-value=0.21 Score=61.49 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=23.9
Q ss_pred CccceEEEEccccCCCCCChHHHHHHHHhC---CCcceEEEe
Q 002183 181 KEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFL 219 (955)
Q Consensus 181 ~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l---~~~~~~v~l 219 (955)
....++||||||+|. ....+.++..+ |.++.+|+.
T Consensus 118 gk~KViIIDEAh~LT----~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLS----RSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcC----HHHHHHHHHHHhccCCCeEEEEE
Confidence 467899999999996 33445555444 456666665
No 338
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.26 E-value=0.51 Score=54.73 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=59.1
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHH-HhcCCeEEEEccChhhHHHHHHHHHHhcCCee---EEeccccc--------
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL-------- 155 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~-l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg---~~tGd~~~-------- 155 (955)
+..|.-+++.|+||+|||..++-.+... +..+.+|+|++.- .=..|+..++-.....+. +..|+.+.
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE-m~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~ 269 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE-MSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLN 269 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHH
Confidence 3567788999999999998776555444 3668889888732 233444444433222111 11222110
Q ss_pred ----CCCCCEEE-----EeHHHHHHHHhcCCccCCccceEEEEccccCCC
Q 002183 156 ----SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 156 ----~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
-.+.++.| .|++.+++...+-......+++||||=.|.+..
T Consensus 270 ~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 270 AVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 01234444 245555543332111122588999999888864
No 339
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.24 E-value=0.3 Score=49.67 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=37.1
Q ss_pred CCHHHHHHHHH-HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccC
Q 002183 77 LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (955)
Q Consensus 77 l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Pt 128 (955)
+++.|.+.+.. +..+..+++++|||||||... .+++..+....+++.+--.
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFIPPDERIITIEDT 61 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEECCc
Confidence 67888888876 577899999999999999875 3444555555566655433
No 340
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.22 E-value=0.74 Score=55.73 Aligned_cols=132 Identities=17% Similarity=0.128 Sum_probs=71.4
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccc---cc-CCCCCEEEEe
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV---TL-SPNASCLVMT 165 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~---~~-~~~~~IlV~T 165 (955)
..+=++++||.|+|||....-... ....+..|.+++=- +=-|+-++=+......++-.+.+. .. -.+.+.-+.-
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld-e~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l 113 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD-ESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSL 113 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC-CccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccH
Confidence 345688999999999986544333 34455556555421 122232222222222121111111 00 0001111111
Q ss_pred HHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccC
Q 002183 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
.+.+.+++..-. ...+-=++|+|.-|++.++.-...+...+.+.|+++.+|+.|=+-|
T Consensus 114 ~~l~~~L~~Ela-~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 114 ESLLSSLLNELA-SYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred HHHHHHHHHHHH-hhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 222222222101 1122248999999999998888888899999999999999997754
No 341
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.20 E-value=1.1 Score=52.53 Aligned_cols=109 Identities=15% Similarity=0.272 Sum_probs=54.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHH--HHHHHHH-hcCCeeEEecccccCCCCCEEEEeHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQ--KYRELHQ-EFKDVGLMTGDVTLSPNASCLVMTTE 167 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q--~~~~l~~-~~~~vg~~tGd~~~~~~~~IlV~Tpe 167 (955)
+..|++||.|+|||.++.+. +..+. ..+ |+-.-+.+ .++.+.. ...++-.+.+... ...+
T Consensus 36 ha~Lf~Gp~G~GKTT~Aril-Ak~LnC~~~------~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~---------~~vd 99 (491)
T PRK14964 36 QSILLVGASGVGKTTCARII-SLCLNCSNG------PTSDPCGTCHNCISIKNSNHPDVIEIDAASN---------TSVD 99 (491)
T ss_pred ceEEEECCCCccHHHHHHHH-HHHHcCcCC------CCCCCccccHHHHHHhccCCCCEEEEecccC---------CCHH
Confidence 46999999999999987543 33321 111 11111111 1112221 1123333322110 1223
Q ss_pred HHHHHHhc--CCccCCccceEEEEccccCCCCCChHHHHHHHHh---CCCcceEEEec
Q 002183 168 ILRGMLYR--GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF---LPPAIKMVFLS 220 (955)
Q Consensus 168 ~L~~~l~~--~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~---l~~~~~~v~lS 220 (955)
.++..+.. ......+.+++||||+|++... ..+.++.. -|+++.+|+.+
T Consensus 100 dIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~----A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 100 DIKVILENSCYLPISSKFKVYIIDEVHMLSNS----AFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHHHHHHHhccccCCceEEEEeChHhCCHH----HHHHHHHHHhCCCCCeEEEEEe
Confidence 44443321 1223568899999999999742 33444443 45566666654
No 342
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.18 E-value=0.28 Score=56.26 Aligned_cols=47 Identities=30% Similarity=0.417 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHhcC--CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEE
Q 002183 77 LDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIY 124 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~ 124 (955)
+++.|.+.+..+.+. .-++|.+|||||||..- |+++..+....+=|+
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~ln~~~~nI~ 290 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSELNTPERNII 290 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHhcCCCceEE
Confidence 488899898876443 34788999999999864 666666655443333
No 343
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.13 E-value=0.19 Score=56.26 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=21.7
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHh
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFR 117 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~ 117 (955)
-.|+..++.||.|+|||..+.. |+..+.
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~-Ian~I~ 194 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQN-IANSIT 194 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHH-HHHHHH
Confidence 6789999999999999976544 555443
No 344
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.13 E-value=1.5 Score=49.45 Aligned_cols=124 Identities=18% Similarity=0.242 Sum_probs=73.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHH--hcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l--~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (955)
.+.+.+.|+.|.|||...-+. ...+ .++.| +...+-+.++++++.+.-+ . .+- -+..
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f-~~~lp~~~k~R----~HFh~Fm~~vh~~l~~~~~-------~------~~~---l~~v 120 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLF-YDSLPIKRKRR----VHFHEFMLDVHSRLHQLRG-------Q------DDP---LPQV 120 (362)
T ss_pred CceEEEECCCCCchhHHHHHH-HHhCCcccccc----ccccHHHHHHHHHHHHHhC-------C------Ccc---HHHH
Confidence 467899999999999863332 1222 12223 2445777888888877541 0 000 1111
Q ss_pred HHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh-CCCcceEEEeccccCC--------hHHHHHHHhhhcCC
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF-LPPAIKMVFLSATMSN--------ATQFAEWICHLHKQ 239 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~-l~~~~~~v~lSAT~~n--------~~~~~~~l~~~~~~ 239 (955)
... ..++..++.|||.| +.|..-...+..++.. +..++-+|+.|-+.|+ .+.|.-+|..+..
T Consensus 121 a~~-------l~~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~- 191 (362)
T PF03969_consen 121 ADE-------LAKESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKR- 191 (362)
T ss_pred HHH-------HHhcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHh-
Confidence 211 24466799999998 4444334555555544 4678899999999873 2566667766543
Q ss_pred CeEEE
Q 002183 240 PCHVV 244 (955)
Q Consensus 240 ~~~v~ 244 (955)
.|.++
T Consensus 192 ~~~vv 196 (362)
T PF03969_consen 192 RCDVV 196 (362)
T ss_pred ceEEE
Confidence 34443
No 345
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.12 E-value=0.82 Score=49.18 Aligned_cols=133 Identities=21% Similarity=0.177 Sum_probs=71.4
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEEccChhhHHHHHHHHHHhcCCee---EEecccccC--------
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTLS-------- 156 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg---~~tGd~~~~-------- 156 (955)
..|.=+++.|+||.|||..+.-.+.....+ +..|+|++.-- =..++..++-.....+. +.+|.....
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm-~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~~~ 95 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEM-SEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQAA 95 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS--HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCC-CHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHHHH
Confidence 345668899999999999888777766665 68999998641 12223333322221110 111111100
Q ss_pred ----CCCCEEE-----EeHHHHHHHHhcCCccCCccceEEEEccccCCCC----CChHHHHHHHHhCC-----CcceEEE
Q 002183 157 ----PNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR----ERGVVWEESIIFLP-----PAIKMVF 218 (955)
Q Consensus 157 ----~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~----~rg~~~~~ii~~l~-----~~~~~v~ 218 (955)
.+..+.| +|++.+.+.+..-......+++||||=.|.+... .+...+..+...|. -++.+++
T Consensus 96 ~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~ 175 (259)
T PF03796_consen 96 AEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIA 175 (259)
T ss_dssp HHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 0122322 2666666655432222267899999999998763 23333334333221 2566777
Q ss_pred eccc
Q 002183 219 LSAT 222 (955)
Q Consensus 219 lSAT 222 (955)
+|-.
T Consensus 176 ~sQl 179 (259)
T PF03796_consen 176 LSQL 179 (259)
T ss_dssp EEEB
T ss_pred cccc
Confidence 6654
No 346
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.05 E-value=0.57 Score=57.59 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=26.3
Q ss_pred ccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccCCh
Q 002183 182 EVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNA 226 (955)
Q Consensus 182 ~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~ 226 (955)
...++|+||+|++.. .....++..+. +.++++.+||-+|.
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHhc-CceEEEEEecCCCh
Confidence 456899999999863 22333443343 45678888887654
No 347
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.04 E-value=0.49 Score=58.94 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=25.9
Q ss_pred CCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEec
Q 002183 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 180 l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lS 220 (955)
....+++||||+|+|.... ...+.+++...+.++.+|+.+
T Consensus 118 ~~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3578899999999998531 112333444455677777765
No 348
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.97 E-value=0.88 Score=54.45 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=25.2
Q ss_pred CCccceEEEEccccCCCCCChHHHHHHHHh---CCCcceEEEec
Q 002183 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIF---LPPAIKMVFLS 220 (955)
Q Consensus 180 l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~---l~~~~~~v~lS 220 (955)
..+.+++||||+|+|... ..+.++.. -|+++.+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~----A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA----GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH----HHHHHHHHHhcCCCCeEEEEEe
Confidence 467899999999999743 34444444 35566667665
No 349
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.93 E-value=0.92 Score=54.57 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=24.7
Q ss_pred CCccceEEEEccccCCCCCChHHHHHHHHhC---CCcceEEEec
Q 002183 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (955)
Q Consensus 180 l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l---~~~~~~v~lS 220 (955)
...++++||||+|+|.. ..++.++..+ |.++.+|+.|
T Consensus 122 ~g~~KV~IIDEvh~Ls~----~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTN----TAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cCCceEEEEEChhhCCH----HHHHHHHHhcccCCCCeEEEEEE
Confidence 35689999999999974 3355555544 4455666544
No 350
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.90 E-value=2.7 Score=48.17 Aligned_cols=118 Identities=10% Similarity=0.106 Sum_probs=62.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeH-HHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT-EIL 169 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp-e~L 169 (955)
-+++++++|+|||.++.--.......|.+|++++ |.|+-+.++.+.+.+..+ +.+..... . ..| ...
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~-vp~~~~~~----~-----~dp~~i~ 171 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKAR-IPFYGSYT----E-----SDPVKIA 171 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccC-CeEEeecC----C-----CCHHHHH
Confidence 4678999999998765433333334566666554 456666666666655422 11111000 0 012 112
Q ss_pred HHHHhcCCccCCccceEEEEccccCCCCCChHHHHHH---HHhCCCcceEEEeccccC
Q 002183 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 170 ~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~i---i~~l~~~~~~v~lSAT~~ 224 (955)
.+.+.... -...++||+|=+-++... ...++++ .....+..-++.++||..
T Consensus 172 ~~~l~~~~--~~~~DvViIDTaGr~~~d--~~lm~El~~i~~~~~p~e~lLVlda~~G 225 (429)
T TIGR01425 172 SEGVEKFK--KENFDIIIVDTSGRHKQE--DSLFEEMLQVAEAIQPDNIIFVMDGSIG 225 (429)
T ss_pred HHHHHHHH--hCCCCEEEEECCCCCcch--HHHHHHHHHHhhhcCCcEEEEEeccccC
Confidence 22221111 135789999999765422 2233333 333455666888999886
No 351
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.87 E-value=0.2 Score=52.78 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=15.8
Q ss_pred EEEcccccccCCCCCcEEEEe
Q 002183 422 LFATETFAMGLNMPAKTVVFT 442 (955)
Q Consensus 422 LvaT~~la~Gidip~~~vVi~ 442 (955)
-+.|-.-+.|..++.+.+++.
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~ 204 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLL 204 (234)
T ss_pred ceechHHcceEEeCCEEEEEC
Confidence 456666688999988887774
No 352
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.83 E-value=0.69 Score=54.09 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.1
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
.++++||+|+|||..+.+-
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999987654
No 353
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.82 E-value=0.87 Score=49.01 Aligned_cols=52 Identities=21% Similarity=0.288 Sum_probs=43.2
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQ 141 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~ 141 (955)
-.|..++|.+++|+|||.-+.-.+...+..|.+++|++- .+...++.+.+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~-~e~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVST-EESPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEe-cCCHHHHHHHHHH
Confidence 457899999999999999888888888888999999875 4667777777766
No 354
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.81 E-value=0.8 Score=52.93 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
.++++.||+|+|||..+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4799999999999988754
No 355
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.72 E-value=1.2 Score=52.57 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~ 111 (955)
+.++++||.|+|||.++-+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999987554
No 356
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=91.60 E-value=2 Score=47.29 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=26.3
Q ss_pred CCCCHHHHHHH-HHHhcCCcEEEEcCCCCchHHHHHHH
Q 002183 75 FELDPFQRVSV-ACLERNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 75 f~l~~~Q~~ai-~~l~~g~~vlv~apTGsGKTl~~~~~ 111 (955)
|.+++--.+++ -.+..++++++.+|+|+|||..+...
T Consensus 47 y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~l 84 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQI 84 (327)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHH
Confidence 44444444444 44677889999999999999976543
No 357
>PRK04328 hypothetical protein; Provisional
Probab=91.56 E-value=0.39 Score=51.29 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=39.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
.|..++|.+++|+|||..+.-.+...+.+|.+++|++ +-+-..+..+.+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 4678999999999999988777777888899999987 334455555555543
No 358
>PF05729 NACHT: NACHT domain
Probab=91.45 E-value=0.91 Score=44.59 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=26.0
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcC-----CeEEEEccChhhHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDK-----QRVIYTSPLKALSNQ 134 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~-----~~vl~l~PtkaLa~Q 134 (955)
-++|.|++|+|||......+......+ ..+++..+.+....+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 478999999999997654444433332 134555555555544
No 359
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.37 E-value=0.72 Score=51.29 Aligned_cols=120 Identities=14% Similarity=0.111 Sum_probs=56.1
Q ss_pred cCCc-EEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHHHHH-hcCCeeEEecccccCCCCCEEEEeH
Q 002183 90 RNES-VLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQ-EFKDVGLMTGDVTLSPNASCLVMTT 166 (955)
Q Consensus 90 ~g~~-vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~~-~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (955)
+..+ +++++|.|+|||.++.. ++..+. .+... .-.+... -....+.. ..+++-.++.... ...+ .+.
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~-lA~~l~~~~~~~-~~~~~~~---~~~~~~~~~~~~d~lel~~s~~--~~~~---i~~ 91 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALA-LAKELLCENPTG-LLPCGHC---RSCKLIPAGNHPDFLELNPSDL--RKID---IIV 91 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHH-HHHHHhCCCccc-CCcccch---hhhhHHhhcCCCceEEeccccc--CCCc---chH
Confidence 3456 99999999999998744 344332 21100 0001110 00001100 0112322222111 1111 344
Q ss_pred HHHHHHHhcCCcc--CCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEec
Q 002183 167 EILRGMLYRGSEV--LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 167 e~L~~~l~~~~~~--l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lS 220 (955)
+.++.+....... .....+||+|||+.|.. ..+.....++..-+.+..+++.+
T Consensus 92 ~~vr~~~~~~~~~~~~~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 92 EQVRELAEFLSESPLEGGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred HHHHHHHHHhccCCCCCCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEc
Confidence 4555444433222 36789999999999975 12333333444444555555554
No 360
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.32 E-value=0.31 Score=54.36 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=35.4
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa 132 (955)
+..+.+++|++|||||||... .+++..+....+++.+-.+.+|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHcccCCCCCEEEECCCcccc
Confidence 467899999999999999864 56666666777888888887764
No 361
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=91.30 E-value=4.4 Score=46.96 Aligned_cols=176 Identities=18% Similarity=0.163 Sum_probs=111.3
Q ss_pred HHHHHHHHHhhcCCccCCC---ccchhhhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCccc-----
Q 002183 762 ELKNRSRVLKKLGHIDADG---VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQ----- 833 (955)
Q Consensus 762 e~~~~~~VL~~lgyid~~~---~vt~KGrvA~eI~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~----- 833 (955)
+.++.+.-|+.+|+|+.+| .+|-.||+++-=.. .---+|.|.+|+..+++|-.||+-|.-|-...=+..-
T Consensus 618 ~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl--~p~~a~~Ir~~v~~~~~pl~i~~~l~pfE~ayls~~l~r~i~ 695 (830)
T COG1202 618 DPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFL--GPSEAEFIREGVLASMDPLRIAAELEPFENAYLSGFLKRAIE 695 (830)
T ss_pred CHHHHHHHHHhcCCeeccCCEeeeccccceeEEeec--CchHHHHHHHhhhccCChHhHhhccccccccccChHHHHHHH
Confidence 6788899999999999765 58999998865443 4556899999999999999999988877432111100
Q ss_pred ----cccchhHHH-HHHHHHH-----------HHHHHHHHHHHc--CCCCCchhhhhccCCccHHH-HHHHHhCCCCHHH
Q 002183 834 ----INLRMELAK-PLQQLQE-----------SARKIAEIQNEC--KLEVNVDEYVESTVRPFLMD-VIYCWSKGATFAE 894 (955)
Q Consensus 834 ----~~~~~~l~~-~~~~l~~-----------~~~~i~~~~~~~--~l~~~~~~~~~~~~~~~l~~-~v~~Wa~G~~f~~ 894 (955)
...|.++.. ++..+.+ +.+++..++.++ ....+..++.++ -+.+ ++..--.|.+-.+
T Consensus 696 ~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~df~~c~c~d~ce~~~~----~lse~ii~lR~~gk~p~~ 771 (830)
T COG1202 696 SALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYMDFLNCTCRDCCECAEQ----RLSEKIIELRIEGKDPSQ 771 (830)
T ss_pred HHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHhcCchhhhHHHHHH----HHHHHHHHHHhcCCCHHH
Confidence 111222211 2222211 122222232221 111111222222 1212 4445578999888
Q ss_pred HHhh------cCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhh
Q 002183 895 VIQM------TDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESL 943 (955)
Q Consensus 895 i~~~------t~~~EG~ivR~~rRl~ellrq~~~aa~~iG~~~L~~k~~~a~~~i 943 (955)
|-+. -..+.|||.-|+-.+..+|.-+...|++.+.++.++.+......|
T Consensus 772 Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ea~~lk~~i 826 (830)
T COG1202 772 ISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEAEAKALKKKI 826 (830)
T ss_pred HHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8876 257899999999988888888888899888888877666544433
No 362
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.29 E-value=0.35 Score=52.74 Aligned_cols=64 Identities=19% Similarity=0.129 Sum_probs=46.9
Q ss_pred hhcCCCC-CCHHHHHHHHHHhc-CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHH
Q 002183 70 AKTYSFE-LDPFQRVSVACLER-NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134 (955)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~-g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q 134 (955)
.....|. +++-|...+..+.. ..+++|++.||||||... .++...+....|+|.+--|-+|--+
T Consensus 150 ~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~~~i~~~eRvItiEDtaELql~ 215 (355)
T COG4962 150 LDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALSGFIDSDERVITIEDTAELQLA 215 (355)
T ss_pred HHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHHhcCCCcccEEEEeehhhhccC
Confidence 3444566 89999999887644 459999999999999853 4444455566799998888766443
No 363
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=91.25 E-value=0.7 Score=49.94 Aligned_cols=91 Identities=18% Similarity=0.204 Sum_probs=50.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHh---cC----CeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEE
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFR---DK----QRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVM 164 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~---~~----~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~ 164 (955)
.+++++|+|+-|||.+..--.-.+-. .+ +-+.+-+|..+=..-.|..+-..++- ...+..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga--------P~~~~~----- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA--------PYRPRD----- 128 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc--------ccCCCC-----
Confidence 58999999999999965432221110 01 23455567776666666666655431 111111
Q ss_pred eHHHHHHHHhcCCccCCccceEEEEccccCCC
Q 002183 165 TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 165 Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
+...+.+....- ..--.++++||||+|.+..
T Consensus 129 ~~~~~~~~~~~l-lr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 129 RVAKLEQQVLRL-LRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred CHHHHHHHHHHH-HHHcCCcEEEeechHHHhc
Confidence 222222211100 0123678999999999875
No 364
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.20 E-value=0.73 Score=54.86 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCchHHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i 112 (955)
+.+|++||.|+|||..|..-.
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458899999999999875543
No 365
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=91.13 E-value=0.44 Score=50.05 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=32.0
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccC
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Pt 128 (955)
.|.-+++.+++|+|||..+.-.+...+..+.+++|+.--
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 356789999999999998877777777778889988655
No 366
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.12 E-value=1.1 Score=50.98 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=16.7
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~ 111 (955)
+.+++.+|.|+|||..+...
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~l 56 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAF 56 (394)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 45899999999999887554
No 367
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.10 E-value=1.1 Score=57.49 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=33.0
Q ss_pred CCccHHHHHHHHhCCCCHHHHHhhcCCCcchHHHHHHHHHH
Q 002183 875 VRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDE 915 (955)
Q Consensus 875 ~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~e 915 (955)
+.+.=.+|+..=++|.|=.||-+.-.+++++|=--++++-.
T Consensus 839 lt~~e~~v~~~~~~g~~~~~ia~~l~~s~~tv~~h~~~~~~ 879 (903)
T PRK04841 839 LTQREWQVLGLIYSGYSNEQIAGELDVAATTIKTHIRNLYQ 879 (903)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 56666778888899999999999999999988776666543
No 368
>PRK10436 hypothetical protein; Provisional
Probab=91.07 E-value=0.43 Score=55.46 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHH--hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 77 LDPFQRVSVACL--ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 77 l~~~Q~~ai~~l--~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
+.+.|.+.+..+ ..+.-++|++|||||||... ++++..+.+..+-+++
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~~~~~i~T 251 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNTAQINICS 251 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCCCCCEEEE
Confidence 567788888765 34556899999999999875 5666666543333343
No 369
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.02 E-value=1.4 Score=53.17 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=25.7
Q ss_pred cCCccceEEEEccccCCCCCChHHHHHHHH---hCCCcceEEEec
Q 002183 179 VLKEVAWVIFDEIHYMKDRERGVVWEESII---FLPPAIKMVFLS 220 (955)
Q Consensus 179 ~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~---~l~~~~~~v~lS 220 (955)
.+.+.++|||||+|.|... ..+.++. ..|+++.+|+.+
T Consensus 129 ~~a~~KVvIIDEad~Ls~~----a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 129 VSARYKVYIIDEVHMLSTA----AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred hcCCcEEEEEEChHhCCHH----HHHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999999742 3334443 345667777755
No 370
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=90.94 E-value=1.1 Score=53.73 Aligned_cols=114 Identities=16% Similarity=0.266 Sum_probs=75.8
Q ss_pred CCCCCCHHHHHHHHHHhcC--CcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEEccChhhHHHHH-HHHHHhcCCe--
Q 002183 73 YSFELDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKY-RELHQEFKDV-- 146 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l~PtkaLa~Q~~-~~l~~~~~~v-- 146 (955)
|.++.+|||.+.++++... +.|.+..++-+|||.+.+..+...+.. ...++|+.||..++.... .+|.-.+...
T Consensus 13 w~~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~ 92 (557)
T PF05876_consen 13 WRTDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPV 92 (557)
T ss_pred CCCCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHH
Confidence 4557899999999999554 578999999999999877766665544 467999999999999876 3444443311
Q ss_pred --eEEec------ccccC----CCCCEEEEe---HHHHHHHHhcCCccCCccceEEEEccccCC
Q 002183 147 --GLMTG------DVTLS----PNASCLVMT---TEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 147 --g~~tG------d~~~~----~~~~IlV~T---pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
+.+.. +.++. ++..+.++. |..|. -..++++++||++.+.
T Consensus 93 l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~~l~---------s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 93 LRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPSNLR---------SRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHhCchhhcccCCchhheecCCCEEEEEeCCCCcccc---------cCCcCEEEEechhhcc
Confidence 11221 11111 123344432 22221 2367899999999885
No 371
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.85 E-value=1.5 Score=49.60 Aligned_cols=123 Identities=11% Similarity=0.046 Sum_probs=58.2
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCC----------eEEEEccChhhHHHHHHHHHH-hcCCeeEEeccccc---CC
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQ----------RVIYTSPLKALSNQKYRELHQ-EFKDVGLMTGDVTL---SP 157 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~----------~vl~l~PtkaLa~Q~~~~l~~-~~~~vg~~tGd~~~---~~ 157 (955)
+..++.+|.|.||+..+...+...+..+. ..+-+++.-. ..+.+.. -.+++-.+.-...- +.
T Consensus 42 HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~----~c~~i~~~~HPDl~~i~~~~~~~~~~~ 117 (365)
T PRK07471 42 HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP----VARRIAAGAHGGLLTLERSWNEKGKRL 117 (365)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh----HHHHHHccCCCCeEEEecccccccccc
Confidence 35899999999999887554444432211 1111222222 2222222 12244444311100 01
Q ss_pred CCCEEEEeHHHHHHHH---hcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEecccc
Q 002183 158 NASCLVMTTEILRGML---YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATM 223 (955)
Q Consensus 158 ~~~IlV~Tpe~L~~~l---~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~ 223 (955)
...|. .+.++.+. ... ..-....+|||||+|+|.... ...+-.++...|.+..+|++|..+
T Consensus 118 ~~~I~---VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 118 RTVIT---VDEVRELISFFGLT-AAEGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccccc---HHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCc
Confidence 13343 34444433 322 234567899999999997321 111223333334455566655544
No 372
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=90.79 E-value=2.8 Score=49.33 Aligned_cols=136 Identities=16% Similarity=0.221 Sum_probs=81.9
Q ss_pred CcEEEEcCCCCchHHHH--HHHHHHHHhcCCeEEEEccChhhHHHHHHHH----HHhcC--CeeEEeccc-cc---CCCC
Q 002183 92 ESVLVSAHTSAGKTAVA--EYAIAMAFRDKQRVIYTSPLKALSNQKYREL----HQEFK--DVGLMTGDV-TL---SPNA 159 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~--~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l----~~~~~--~vg~~tGd~-~~---~~~~ 159 (955)
+..+.--|=--|||..- +++++..--.|-++.|++..|--++-++.++ +.+|+ .+-...|++ .+ ...+
T Consensus 203 kaTVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~~s~pg~Ks 282 (668)
T PHA03372 203 KATVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVISIDHRGAKS 282 (668)
T ss_pred cceEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEEEecCCCcc
Confidence 34566678999999643 3343333345899999999998888777665 45666 221111111 00 1122
Q ss_pred CEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC-CCcceEEEeccccCChHHHHHHHhhhcC
Q 002183 160 SCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLSATMSNATQFAEWICHLHK 238 (955)
Q Consensus 160 ~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l-~~~~~~v~lSAT~~n~~~~~~~l~~~~~ 238 (955)
.++.+| ....++..-++.+++++||||.+. ...+..++-.+ .++.++|+.|-|-+. ++-..|+..+++
T Consensus 283 t~~fas------c~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~Nsg-~~sTSfL~~Lk~ 351 (668)
T PHA03372 283 TALFAS------CYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTNTT-NDATCFLTKLNN 351 (668)
T ss_pred eeeehh------hccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCCCC-CccchHHHhccC
Confidence 222222 223334445678999999999986 44555566544 568899999988431 223367765543
No 373
>PRK09087 hypothetical protein; Validated
Probab=90.66 E-value=0.94 Score=47.59 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (955)
..+++.+|+|+|||....
T Consensus 45 ~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 348999999999998765
No 374
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=90.55 E-value=0.57 Score=53.64 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHH
Q 002183 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF 116 (955)
Q Consensus 75 f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l 116 (955)
|-+.......+..+..++++++.+|+|+|||..+. .+...+
T Consensus 178 ~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~-~la~~l 218 (459)
T PRK11331 178 FIPETTIETILKRLTIKKNIILQGPPGVGKTFVAR-RLAYLL 218 (459)
T ss_pred cCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHh
Confidence 33555666777788899999999999999999875 333443
No 375
>PRK10867 signal recognition particle protein; Provisional
Probab=90.53 E-value=2.4 Score=48.83 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=61.1
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (955)
-+++++++|+|||.++.-.+...... |.+++++. +.|+-+..+.+.+.+..+ +.++..... ..|..+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~g-v~v~~~~~~---------~dp~~i 171 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIG-VPVFPSGDG---------QDPVDI 171 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcC-CeEEecCCC---------CCHHHH
Confidence 46789999999998765444433344 66665544 456666555555544332 222221110 123322
Q ss_pred H-HHHhcCCccCCccceEEEEccccCCCCCChHHHHH---HHHhCCCcceEEEeccccC
Q 002183 170 R-GMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEE---SIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 170 ~-~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~---ii~~l~~~~~~v~lSAT~~ 224 (955)
. ..+... ....+++||+|=+=++... .....+ +.....+.--++.++||..
T Consensus 172 ~~~a~~~a--~~~~~DvVIIDTaGrl~~d--~~lm~eL~~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 172 AKAALEEA--KENGYDVVIVDTAGRLHID--EELMDELKAIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred HHHHHHHH--HhcCCCEEEEeCCCCcccC--HHHHHHHHHHHHhhCCCeEEEEEecccH
Confidence 2 222211 1246789999998665421 222222 2223334334777788764
No 376
>PHA00012 I assembly protein
Probab=90.50 E-value=2.4 Score=46.20 Aligned_cols=31 Identities=29% Similarity=0.178 Sum_probs=26.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEE
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIY 124 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~ 124 (955)
-++.+..|||||+.+.--|...+++|.+|+-
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~Gr~VaT 34 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKGCIVAT 34 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcCCEEEe
Confidence 5789999999999999888888888875443
No 377
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.43 E-value=0.83 Score=53.04 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=47.5
Q ss_pred HHHHHHHHH--hcCCcEEEEcCCCCchHHHHHHHHHHHHhc------CCeEEEEccChhhHHHHHHHHHHhc
Q 002183 80 FQRVSVACL--ERNESVLVSAHTSAGKTAVAEYAIAMAFRD------KQRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 80 ~Q~~ai~~l--~~g~~vlv~apTGsGKTl~~~~~i~~~l~~------~~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
+|++-=..+ ..+.-++|++..|||||.+|+--++..+-+ ++.|+++.|.+-+..-+.+.+-+++
T Consensus 213 IQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 213 IQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred hhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhc
Confidence 344443333 456678999999999999998877666632 3459999999998888877776654
No 378
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.40 E-value=0.38 Score=51.77 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=32.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
.|.-++|++++|+|||..+.-.+...+.+|.+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 56789999999999999887777777777889999984
No 379
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=90.37 E-value=0.51 Score=51.33 Aligned_cols=101 Identities=23% Similarity=0.332 Sum_probs=61.7
Q ss_pred HhcC--CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEe
Q 002183 88 LERN--ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMT 165 (955)
Q Consensus 88 l~~g--~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~T 165 (955)
++++ .++|+.+|+|+|||..+-+.+...-.+.-+.|=++-|.+=.+++-.-|.+--
T Consensus 157 ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq---------------------- 214 (554)
T KOG2028|consen 157 IEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQ---------------------- 214 (554)
T ss_pred HHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHH----------------------
Confidence 4555 4799999999999998766554443444567777777776666544443310
Q ss_pred HHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCC--CcceEEEeccccCCh
Q 002183 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP--PAIKMVFLSATMSNA 226 (955)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~--~~~~~v~lSAT~~n~ 226 (955)
+.....++=..+.+||+|+.+.... . ..|| .+--+++..||-.|+
T Consensus 215 ---------~~~~l~krkTilFiDEiHRFNksQQ-----D--~fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 215 ---------NEKSLTKRKTILFIDEIHRFNKSQQ-----D--TFLPHVENGDITLIGATTENP 261 (554)
T ss_pred ---------HHHhhhcceeEEEeHHhhhhhhhhh-----h--cccceeccCceEEEecccCCC
Confidence 0011233345789999998864311 1 1222 234578888888776
No 380
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.33 E-value=0.75 Score=50.76 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCchHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (955)
.++++.+|+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 469999999999998764
No 381
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.28 E-value=0.6 Score=49.16 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=36.0
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l 139 (955)
..|..+++.+++|+|||..+...+...+.++..++|++-- .-..++.+..
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e-~~~~~i~~~~ 67 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE-ESRESIIRQA 67 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc-CCHHHHHHHH
Confidence 3578899999999999987766555666778889888753 3344544443
No 382
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=90.27 E-value=2.1 Score=47.29 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=29.3
Q ss_pred HHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC--CCcceEEEeccc
Q 002183 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL--PPAIKMVFLSAT 222 (955)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l--~~~~~~v~lSAT 222 (955)
.+.+.+...+ .....+++|||+||.|... ....++..+ |++..+|++|..
T Consensus 111 ~i~~~l~~~p-~~~~~kVvII~~ae~m~~~----aaNaLLK~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 111 EIKRFLSRPP-LEAPRKVVVIEDAETMNEA----AANALLKTLEEPGNGTLILIAPS 162 (314)
T ss_pred HHHHHHccCc-ccCCceEEEEEchhhcCHH----HHHHHHHHHhCCCCCeEEEEECC
Confidence 3444444333 3467899999999999742 334444443 335656665543
No 383
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.25 E-value=0.89 Score=48.19 Aligned_cols=72 Identities=24% Similarity=0.256 Sum_probs=43.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG 171 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~ 171 (955)
.++++.+|+|.|||..|.+-.... |..+- .|++-. +--|+-|..
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~Em---gvn~k-------------------------~tsGp~--------leK~gDlaa 96 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIANEL---GVNLK-------------------------ITSGPA--------LEKPGDLAA 96 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHHHh---cCCeE-------------------------eccccc--------ccChhhHHH
Confidence 579999999999999765432222 21111 122211 123444555
Q ss_pred HHhcCCccCCccceEEEEccccCCCCCChHHHHHHHH
Q 002183 172 MLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208 (955)
Q Consensus 172 ~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~ 208 (955)
++.+ +..=+++.+||+|++. +..++++-
T Consensus 97 iLt~----Le~~DVLFIDEIHrl~-----~~vEE~LY 124 (332)
T COG2255 97 ILTN----LEEGDVLFIDEIHRLS-----PAVEEVLY 124 (332)
T ss_pred HHhc----CCcCCeEEEehhhhcC-----hhHHHHhh
Confidence 5543 5566899999999995 34666553
No 384
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=90.17 E-value=0.82 Score=45.50 Aligned_cols=127 Identities=16% Similarity=0.096 Sum_probs=66.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHH-HHHHHHhcCCeeEEeccc--cc-CCCCCEEEEeHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK-YRELHQEFKDVGLMTGDV--TL-SPNASCLVMTTEI 168 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~-~~~l~~~~~~vg~~tGd~--~~-~~~~~IlV~Tpe~ 168 (955)
-+.+..++|-|||.++.--.+.+...|.+|+++.=.|.-...= ..-+... .+-+...+. .. ..+..- ....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~---~~~~ 81 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREA---DTAI 81 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHH---HHHH
Confidence 4677888999999999888888889999998874444321000 0111111 222222111 11 111000 0111
Q ss_pred HHHHHhcCC--ccCCccceEEEEccccCCCCCCh--HHHHHHHHhCCCcceEEEeccccC
Q 002183 169 LRGMLYRGS--EVLKEVAWVIFDEIHYMKDRERG--VVWEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 169 L~~~l~~~~--~~l~~l~~vIiDEaH~l~d~~rg--~~~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
..+.+.... ..-.++++||+||+=...+.+.- ..+..++...|++.-+|+..-.+|
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 111111111 11257899999999866544321 223345555677777777666555
No 385
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.01 E-value=6.2 Score=46.10 Aligned_cols=124 Identities=21% Similarity=0.239 Sum_probs=62.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHH-HHHhcCC-eEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIA-MAFRDKQ-RVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT 166 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~-~~l~~~~-~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp 166 (955)
|.-+.+.+|||+|||.+...... .....|. ++.++. +.+.=+.+..+.|.+.++ +... .+.++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilG-Vpv~------------~~~~~ 322 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILG-VPVH------------AVKDA 322 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhC-CCee------------ccCCc
Confidence 45678899999999987654333 3344443 443332 334445555566555543 1110 11122
Q ss_pred HHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCC----CcceEEEeccccCChHHHHHHHhh
Q 002183 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP----PAIKMVFLSATMSNATQFAEWICH 235 (955)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~----~~~~~v~lSAT~~n~~~~~~~l~~ 235 (955)
..+...+ ..+.+.+++++|.+=+.. +.....+.+..+. +.-.++.++||... ..+.+.+..
T Consensus 323 ~Dl~~aL----~~L~d~d~VLIDTaGr~~---~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-~~l~~i~~~ 387 (484)
T PRK06995 323 ADLRLAL----SELRNKHIVLIDTIGMSQ---RDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-DTLNEVVQA 387 (484)
T ss_pred hhHHHHH----HhccCCCeEEeCCCCcCh---hhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-HHHHHHHHH
Confidence 2222122 125566899999964332 1112222232221 22367888999753 334444443
No 386
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.01 E-value=1.3 Score=52.50 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCccceEEEEccccCCCCCChHHHHHHHHh---CCCcceEEEec
Q 002183 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIF---LPPAIKMVFLS 220 (955)
Q Consensus 180 l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~---l~~~~~~v~lS 220 (955)
..+..++||||||++... ..+.++.. -|+++.+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~----a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ----SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH----HHHHHHHHHhcCCCCceEEEEE
Confidence 457789999999999742 33344433 34566666655
No 387
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.91 E-value=0.78 Score=48.11 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=40.4
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
.|..+++.+++|+|||..+..-+...+.++.+++|++-.. -.+|..+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHc
Confidence 4677899999999999887777777778898999987654 456666666554
No 388
>PF12846 AAA_10: AAA-like domain
Probab=89.89 E-value=0.49 Score=51.85 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=35.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSN 133 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~ 133 (955)
+.++++.|+||||||......+...+..|..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 4579999999999999888777778888999999877755554
No 389
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.88 E-value=0.65 Score=50.05 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHh--cCCcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEEccChh
Q 002183 77 LDPFQRVSVACLE--RNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKA 130 (955)
Q Consensus 77 l~~~Q~~ai~~l~--~g~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l~Ptka 130 (955)
+.+.|.+.+..+. .+..+++++|||||||... .+++..+.. +.+++.+--..+
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~~~~~iitiEdp~E 119 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNTPEKNIITVEDPVE 119 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCCCCCeEEEECCCce
Confidence 4677888886653 3346899999999999875 445455543 455665543333
No 390
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=89.72 E-value=2 Score=48.01 Aligned_cols=127 Identities=14% Similarity=0.131 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHH----hcC---CcEEEEcCCCCchHHHHHHHHHHHHhcCC---eEEEEccChhhHHHHHHHHHH-hcCC
Q 002183 77 LDPFQRVSVACL----ERN---ESVLVSAHTSAGKTAVAEYAIAMAFRDKQ---RVIYTSPLKALSNQKYRELHQ-EFKD 145 (955)
Q Consensus 77 l~~~Q~~ai~~l----~~g---~~vlv~apTGsGKTl~~~~~i~~~l~~~~---~vl~l~PtkaLa~Q~~~~l~~-~~~~ 145 (955)
++|||..++..+ .+| +-.++.||.|.||+..+..-....+-.++ ...=.+|. .+.+.. -.++
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~s-------C~~~~~g~HPD 75 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRG-------CQLMQAGTHPD 75 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHH-------HHHHHcCCCCC
Confidence 456777776665 333 46789999999999887543332222111 00000111 111111 1224
Q ss_pred eeEEecccccCCCCCEEEEeHHHHHH---HHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC---CCcceEEEe
Q 002183 146 VGLMTGDVTLSPNASCLVMTTEILRG---MLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFL 219 (955)
Q Consensus 146 vg~~tGd~~~~~~~~IlV~Tpe~L~~---~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l---~~~~~~v~l 219 (955)
+..+..+.. ...| +.+.++. .++..+ .....+++|||+||.|.. .....+++.+ |++.-+|++
T Consensus 76 ~~~i~p~~~---~~~I---~idqiR~l~~~~~~~~-~~g~~kV~iI~~ae~m~~----~AaNaLLKtLEEPp~~t~fiL~ 144 (334)
T PRK07993 76 YYTLTPEKG---KSSL---GVDAVREVTEKLYEHA-RLGGAKVVWLPDAALLTD----AAANALLKTLEEPPENTWFFLA 144 (334)
T ss_pred EEEEecccc---cccC---CHHHHHHHHHHHhhcc-ccCCceEEEEcchHhhCH----HHHHHHHHHhcCCCCCeEEEEE
Confidence 444432210 0122 2333443 333322 346789999999999984 3344455554 344555555
Q ss_pred cc
Q 002183 220 SA 221 (955)
Q Consensus 220 SA 221 (955)
|.
T Consensus 145 t~ 146 (334)
T PRK07993 145 CR 146 (334)
T ss_pred EC
Confidence 54
No 391
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.71 E-value=1.4 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=17.6
Q ss_pred CcEEEEcCCCCchHHHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIA 113 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~ 113 (955)
+.+|+.||.|+|||.++...+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk 60 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAK 60 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHH
Confidence 5679999999999998755433
No 392
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=89.59 E-value=0.37 Score=56.81 Aligned_cols=55 Identities=22% Similarity=0.118 Sum_probs=43.6
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeE
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGL 148 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~ 148 (955)
.+++|.||||||||..+.+|-+. ..+..+||+-|-.+|.......+++.+.+|-+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll--~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~v 99 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL--NYPGSMIVTDPKGELYEKTAGYRKKRGYKVYV 99 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH--hccCCEEEEECCCcHHHHHHHHHHHCCCEEEE
Confidence 57999999999999999888653 34558999999999998877777665544433
No 393
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=89.58 E-value=1.2 Score=46.48 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=35.5
Q ss_pred HhcCC-cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHH
Q 002183 88 LERNE-SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK 135 (955)
Q Consensus 88 l~~g~-~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~ 135 (955)
+..|+ -+.|+++.|||||++.- ++...+..+..++++.|-..++.+-
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~~~~~s~~~ 94 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVIDKPTLSDAT 94 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEecCcchhHHH
Confidence 45566 67899999999999987 7777777777777666666555554
No 394
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.53 E-value=0.99 Score=54.03 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=17.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIA 113 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~ 113 (955)
+.+|+++|.|+|||.++.+...
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999998865443
No 395
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=89.51 E-value=1.9 Score=47.94 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHh--c---CCcEEEEcCCCCchHHHHHHHHH
Q 002183 78 DPFQRVSVACLE--R---NESVLVSAHTSAGKTAVAEYAIA 113 (955)
Q Consensus 78 ~~~Q~~ai~~l~--~---g~~vlv~apTGsGKTl~~~~~i~ 113 (955)
+|||..++..+. . .+..++.+|.|.|||..+.....
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~ 43 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQ 43 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHH
Confidence 577888877763 2 24688999999999988765433
No 396
>PRK05748 replicative DNA helicase; Provisional
Probab=89.50 E-value=1.3 Score=51.84 Aligned_cols=106 Identities=18% Similarity=0.183 Sum_probs=60.3
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhcCCee---EEeccccc---------
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL--------- 155 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg---~~tGd~~~--------- 155 (955)
..|.-++|.|+||.|||..++--+.... ..|..|+|++.- .=..|+..++....+.+. +..|..+.
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlE-ms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a 279 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLE-MGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIA 279 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCC-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 5567789999999999987765555543 457778877543 345566666543333211 12222211
Q ss_pred ---CCCCCEEE-----EeHHHHHHHHhcCCccCCccceEEEEccccCC
Q 002183 156 ---SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 156 ---~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
-.+.++.| .|++.+++.+.+-.....++++||||=.|.+.
T Consensus 280 ~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 280 MGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 01234444 24555554332211111268899999999885
No 397
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.44 E-value=0.47 Score=52.84 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=34.7
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSN 133 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~ 133 (955)
+..+.+++|+++||||||... .+++..+....+++.+=-+.+|.-
T Consensus 157 v~~~~nili~G~tgSGKTTll-~aL~~~ip~~~ri~tiEd~~El~l 201 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFT-NAALREIPAIERLITVEDAREIVL 201 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHH-HHHHhhCCCCCeEEEecCCCcccc
Confidence 467889999999999999864 566677777778877766666643
No 398
>PRK06904 replicative DNA helicase; Validated
Probab=89.42 E-value=1.6 Score=51.21 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=72.2
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHH-HhcCCeEEEEccChhhHHHHHHHHHHhcCCe---eEEec-ccc--------
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDV---GLMTG-DVT-------- 154 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~-l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~v---g~~tG-d~~-------- 154 (955)
+..|.=+++.|.||.|||..++-.+... ...+..|+|.+.- .=..|+..++-.....+ .+..| ..+
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~ 296 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKIS 296 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHH
Confidence 4567778889999999998765433333 3457788887654 44555655554443321 12233 111
Q ss_pred -----cCCCCCEEE-----EeHHHHHHHHhcCCccCCccceEEEEccccCCCCC----ChHHHHHHHHhC-----CCcce
Q 002183 155 -----LSPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE----RGVVWEESIIFL-----PPAIK 215 (955)
Q Consensus 155 -----~~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~----rg~~~~~ii~~l-----~~~~~ 215 (955)
+...+++.| .|+..++....+-......+++||||=.+.|...+ |...+.++...| .-+++
T Consensus 297 ~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ip 376 (472)
T PRK06904 297 STVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVP 376 (472)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCe
Confidence 112334555 35555554332211112357899999999886432 222333333332 12566
Q ss_pred EEEec
Q 002183 216 MVFLS 220 (955)
Q Consensus 216 ~v~lS 220 (955)
+|++|
T Consensus 377 Vi~ls 381 (472)
T PRK06904 377 VVALS 381 (472)
T ss_pred EEEEE
Confidence 77776
No 399
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=89.41 E-value=0.8 Score=47.41 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=36.8
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l 139 (955)
.|.-+.+.+|+|+|||..+...+......+.+++|+.-.. ...+...+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHH
Confidence 4577899999999999998777777777788999988764 333333333
No 400
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=89.34 E-value=2.9 Score=41.70 Aligned_cols=137 Identities=17% Similarity=0.113 Sum_probs=72.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-CeeEEe-c-cccc---CCCCCEEEEeHH
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMT-G-DVTL---SPNASCLVMTTE 167 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~t-G-d~~~---~~~~~IlV~Tpe 167 (955)
++|.--.|=|||.+++--+++++.+|.+|.|+.=.|-=...=.+.....|+ .+.... | +.+. +++.++ ....
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~~d~--~aa~ 108 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDREADI--AAAK 108 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcCcHHHH--HHHH
Confidence 556666677889999999999999999999987666543333333334443 222211 1 1111 122333 2222
Q ss_pred HHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh---CCCcceEEEeccccCC-hHHHHHHHh
Q 002183 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF---LPPAIKMVFLSATMSN-ATQFAEWIC 234 (955)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~---l~~~~~~v~lSAT~~n-~~~~~~~l~ 234 (955)
..+..... ...-..+++||+||.-+....+.- .+++++.. -|.+.-+|+.--..|. ..+.++.+.
T Consensus 109 ~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l-~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlVT 177 (198)
T COG2109 109 AGWEHAKE-ALADGKYDLVILDELNYALRYGLL-PLEEVVALLKARPEHTHVIITGRGAPPELIELADLVT 177 (198)
T ss_pred HHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCC-CHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 21111100 011126899999999877654322 24444443 3455555554433332 245555554
No 401
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=89.26 E-value=0.7 Score=55.56 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHh--cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEE
Q 002183 77 LDPFQRVSVACLE--RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIY 124 (955)
Q Consensus 77 l~~~Q~~ai~~l~--~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~ 124 (955)
+.+-|.+.+..+. .+..+++++|||||||... ++++..+.+..+-++
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~~~~~~i~ 348 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILNTEEVNIS 348 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhCCCCceEE
Confidence 4667777776653 3456889999999999875 666666654333333
No 402
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=89.25 E-value=0.66 Score=51.12 Aligned_cols=46 Identities=26% Similarity=0.241 Sum_probs=38.8
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q 134 (955)
..|.-+.+.+|+|+|||..++..+......+.+++|+..-.++..+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 98 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH
Confidence 3456788999999999999988888888889999999887766664
No 403
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.17 E-value=1.9 Score=49.55 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~ 111 (955)
+.+|+++|.|+|||.++...
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 34889999999999988554
No 404
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=89.11 E-value=1.7 Score=44.12 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=18.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMA 115 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~ 115 (955)
+.+++.+|+|+|||..+..-+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999998775544443
No 405
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.04 E-value=0.64 Score=50.37 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=36.3
Q ss_pred HHHHHHHHH-HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC-CeEEEEccChhh
Q 002183 79 PFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYTSPLKAL 131 (955)
Q Consensus 79 ~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~-~~vl~l~PtkaL 131 (955)
+...+.+.. +..+.+++++|+||||||... .+++..+... .+++++-.+.++
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHTTTSEEEEEESSS-S
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHH-HHHhhhccccccceEEeccccce
Confidence 334444443 356789999999999999876 5556666666 788888777665
No 406
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=89.01 E-value=3.1 Score=41.57 Aligned_cols=129 Identities=13% Similarity=0.026 Sum_probs=72.1
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccc--c-CCCCC-EEEEeHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT--L-SPNAS-CLVMTTEI 168 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~--~-~~~~~-IlV~Tpe~ 168 (955)
-+.|---.|=|||.+|+--.++++.+|.+|+++.=.|--...=...+.+.++.+.+...+.. . ..+.+ . ..+.
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~~g~~~~~~~~~~~~~---~~~~ 99 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVRCDLPRCLDTPHLDES---EKKA 99 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEECCCCCeeeCCCcCHH---HHHH
Confidence 35566667889999999889999999999999987765432222333344555555443321 1 01100 0 0011
Q ss_pred HHHHHhcCC--ccCCccceEEEEccccCCCCCChH--HHHHHHHhCCCcceEEEeccccC
Q 002183 169 LRGMLYRGS--EVLKEVAWVIFDEIHYMKDRERGV--VWEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 169 L~~~l~~~~--~~l~~l~~vIiDEaH~l~d~~rg~--~~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
....+.... ..-..+++||+||+=+..+.+.-. .+.+.+...|++.-+|+.--.+|
T Consensus 100 ~~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p 159 (178)
T PRK07414 100 LQELWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMP 159 (178)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 112221111 112578999999998776543221 23334455566666666655555
No 407
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=88.88 E-value=2.3 Score=50.45 Aligned_cols=130 Identities=18% Similarity=0.275 Sum_probs=0.0
Q ss_pred cCCcEEEEcCCCCchHH--HHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCC----------
Q 002183 90 RNESVLVSAHTSAGKTA--VAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSP---------- 157 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl--~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~---------- 157 (955)
.|-..|++-..|-|||+ +...-|+..--..+.||+++|...|-| |+.+|..+.++ +..|....+
T Consensus 281 sGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQN-WlsEfnmWiP~---y~sD~~vrpR~F~vf~LnD 356 (1387)
T KOG1016|consen 281 SGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQN-WLSEFNMWIPK---YFSDTGVRPRSFEVFLLND 356 (1387)
T ss_pred CCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHHH-HHHHhhhhcCC---CcccCCCccceeEEEEecC
Q ss_pred -----------------CCCEEEEeHHHHHHHHhc-------CCccCCccc-----------------------------
Q 002183 158 -----------------NASCLVMTTEILRGMLYR-------GSEVLKEVA----------------------------- 184 (955)
Q Consensus 158 -----------------~~~IlV~Tpe~L~~~l~~-------~~~~l~~l~----------------------------- 184 (955)
..-|+.+-+|.++-+... ....++.+.
T Consensus 357 ~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPD 436 (1387)
T KOG1016|consen 357 GVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPD 436 (1387)
T ss_pred chhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCC
Q ss_pred eEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccCC
Q 002183 185 WVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSN 225 (955)
Q Consensus 185 ~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n 225 (955)
+||.||-|++.+. ...+...+..+....++|+....+-|
T Consensus 437 lVICDEGHrIKN~--~A~iS~aLk~IrtrRRiVLTGYPLQN 475 (1387)
T KOG1016|consen 437 LVICDEGHRIKNI--TAEISMALKAIRTRRRIVLTGYPLQN 475 (1387)
T ss_pred eEEecCCceeccc--hHHHHHHHHHhhhceeEEEecccccc
No 408
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=88.83 E-value=0.76 Score=50.68 Aligned_cols=46 Identities=26% Similarity=0.212 Sum_probs=39.2
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK 135 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~ 135 (955)
.|.-+.+.+|+|+|||..++..+......+.+++|+.+-.++..+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~ 99 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVY 99 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHH
Confidence 3567889999999999999888888888899999999887777653
No 409
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.73 E-value=0.27 Score=52.62 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=18.3
Q ss_pred hcCCcEEEEcCCCCchHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~ 110 (955)
+...|+++.+|||||||+.|.-
T Consensus 95 L~KSNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHH
Confidence 3456899999999999998754
No 410
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=88.73 E-value=2.2 Score=51.95 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhcCCccCCC-ccchhhhhhhcccCCchhHHHHHHhhCC
Q 002183 759 FRDELKNRSRVLKKLGHIDADG-VVQLKGRAACLIDTGDELLVTELMFNGT 808 (955)
Q Consensus 759 ~~~e~~~~~~VL~~lgyid~~~-~vt~KGrvA~eI~s~~eLlltEll~~g~ 808 (955)
.-++|.....+|+.+..+-.++ -|.+- | -..+.+.++..++-++-
T Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~fi~~~----~-~~~~~~~~~~~~~~~~~ 648 (725)
T PRK07133 603 YDVEFMEIAHFLKDLKILASSDNFILFS----S-KRDEIDELIIKLNKNNY 648 (725)
T ss_pred ccHHHHHHHHHHhhhheeeecCceEEEe----c-CccchHHHHHHHHHhhH
Confidence 3478999999999999886543 22111 1 00245666777776654
No 411
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=88.72 E-value=1.1 Score=49.99 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
.++++.+|+|+|||..+..
T Consensus 52 ~~~ll~GppG~GKT~la~~ 70 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANI 70 (328)
T ss_pred CcEEEECCCCccHHHHHHH
Confidence 5799999999999998763
No 412
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.65 E-value=1.6 Score=54.34 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMA 115 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~ 115 (955)
..++++.+|+|+|||.++.......
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999876544433
No 413
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=88.55 E-value=2.5 Score=50.74 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCchHHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i 112 (955)
+..|++||.|+|||.++-...
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457889999999999876543
No 414
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=88.44 E-value=2.6 Score=46.96 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-CeeEEecccccCCC
Q 002183 80 FQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPN 158 (955)
Q Consensus 80 ~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~tGd~~~~~~ 158 (955)
...++-.....+..|++.+++|+||+.+|-..-... .+...-++.+.-.++...... ...|+ .-|.++|.....
T Consensus 11 ~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s-~r~~~pfv~vnc~~~~~~~l~--~~lfG~~~g~~~ga~~~~-- 85 (329)
T TIGR02974 11 VLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS-KRWQGPLVKLNCAALSENLLD--SELFGHEAGAFTGAQKRH-- 85 (329)
T ss_pred HHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc-CccCCCeEEEeCCCCChHHHH--HHHhccccccccCccccc--
Confidence 344444555778899999999999999875433222 222223344443344433222 12455 334455543211
Q ss_pred CCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCC
Q 002183 159 ASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 159 ~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
++ .....+=+.+++||+|.+..
T Consensus 86 -------~G---------~~~~a~gGtL~Ldei~~L~~ 107 (329)
T TIGR02974 86 -------QG---------RFERADGGTLFLDELATASL 107 (329)
T ss_pred -------CC---------chhhCCCCEEEeCChHhCCH
Confidence 11 11122346899999999873
No 415
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.39 E-value=0.81 Score=54.02 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=47.1
Q ss_pred HHHHHHH-----hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHh
Q 002183 82 RVSVACL-----ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 82 ~~ai~~l-----~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
...++.+ ..|..++|.+|+|+|||+.++..+...+++|.+++|++ .-+=..|..++...+
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 3455554 34578999999999999998888888888899999988 456677777777654
No 416
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=88.34 E-value=1.8 Score=51.11 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=54.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCC---eEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQ---RVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~---~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (955)
..|++||.|+|||.++..-+...+...+ .....++. .+.+...+ +..++.++... ++ ..+.+
T Consensus 38 ayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~-------C~~~~~~~-h~dv~eldaas----~~---gId~I 102 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ-------CQSALENR-HIDIIEMDAAS----NR---GIDDI 102 (535)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH-------HHHHhhcC-CCeEEEecccc----cc---CHHHH
Confidence 3589999999999887554333322111 11111111 11111111 22223332211 11 23556
Q ss_pred HHHHhcC--CccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEec
Q 002183 170 RGMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 170 ~~~l~~~--~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lS 220 (955)
++.+... ........++||||||+|.... ...+...+..-|+++.+|+.+
T Consensus 103 Relie~~~~~P~~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 103 RELIEQTKYKPSMARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred HHHHHHHhhCcccCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 6555331 2235678999999999997421 112223333345677777665
No 417
>PHA02542 41 41 helicase; Provisional
Probab=88.34 E-value=2.2 Score=49.89 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=29.2
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
.|.-++++|+||.|||..++--+......|..|+|++
T Consensus 189 ~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS 225 (473)
T PHA02542 189 RKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS 225 (473)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4566888999999999988766655556788888886
No 418
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=88.23 E-value=0.33 Score=55.59 Aligned_cols=55 Identities=18% Similarity=0.012 Sum_probs=41.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEE
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLM 149 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~ 149 (955)
+++|.||||||||..+.+|-+. ..+..+|++-|--++.....+..+..+.+|-++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll--~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~ 55 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLL--TWPGSVVVLDPKGENFELTSEHRRALGRKVFVF 55 (384)
T ss_pred CeeEecCCCCCCccEEEccchh--cCCCCEEEEccchhHHHHHHHHHHHcCCeEEEE
Confidence 5799999999999998877544 346789999999999987766665544444443
No 419
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=88.23 E-value=0.63 Score=48.55 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=31.0
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
.|.-+++.+++|+|||..+...+......+.+++|+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3567889999999999988877777777788999985
No 420
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=88.18 E-value=1.9 Score=46.45 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=60.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (955)
|.-+=|.+|-|||||.++.-++..+...+.+++|+---.+|--+-.+.+..-+ ..+++|..|....
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~--------------~d~l~v~~~~~~e 125 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL--------------LDNLLVSQPDTGE 125 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh--------------hcceeEecCCCHH
Confidence 34455899999999999999999999999999999888888776666555432 2345555553222
Q ss_pred ------HHHhcCCccCCccceEEEEccccC
Q 002183 171 ------GMLYRGSEVLKEVAWVIFDEIHYM 194 (955)
Q Consensus 171 ------~~l~~~~~~l~~l~~vIiDEaH~l 194 (955)
+.+.+.. .+.+++||+|=+=-+
T Consensus 126 ~q~~i~~~~~~~~--~~~i~LvVVDSvaa~ 153 (279)
T COG0468 126 QQLEIAEKLARSG--AEKIDLLVVDSVAAL 153 (279)
T ss_pred HHHHHHHHHHHhc--cCCCCEEEEecCccc
Confidence 1111111 116999999976433
No 421
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=88.15 E-value=1.5 Score=53.19 Aligned_cols=56 Identities=29% Similarity=0.290 Sum_probs=45.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChh--hHHHHHHHHHHhcCC
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKA--LSNQKYRELHQEFKD 145 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Ptka--La~Q~~~~l~~~~~~ 145 (955)
...+++|.|+||+|||..+...+.+.++.|..++++=|--. |....+...+..+..
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 45789999999999999998888889988988888888764 777766666665443
No 422
>PRK09354 recA recombinase A; Provisional
Probab=87.96 E-value=0.89 Score=50.58 Aligned_cols=45 Identities=29% Similarity=0.252 Sum_probs=39.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q 134 (955)
.|.-+.+.+|+|||||..++..+..+...|.+++|+..-.++...
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 103 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH
Confidence 356788999999999999999888888889999999988877764
No 423
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=87.95 E-value=1.2 Score=47.87 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=30.7
Q ss_pred CCHHHHHH----HHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 77 LDPFQRVS----VACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 77 l~~~Q~~a----i~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
.++..++. +..+..|.++++.+|+|+|||.++..- ...+ |..++.+
T Consensus 3 ~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~l-a~~l--g~~~~~i 52 (262)
T TIGR02640 3 ETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHV-ARKR--DRPVMLI 52 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHH-HHHh--CCCEEEE
Confidence 44444444 445678999999999999999988543 3332 4444444
No 424
>PRK07004 replicative DNA helicase; Provisional
Probab=87.93 E-value=1.5 Score=51.23 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=58.6
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHH-HHhcCCeEEEEccChhhHHHHHHHHHHhcCCee---EEeccccc--------
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL-------- 155 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~-~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg---~~tGd~~~-------- 155 (955)
+..|.-++|.|.||+|||..++--+.. ++..+..|+|.+.- .=..|...++-.....+. +..|..+.
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlE-M~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~ 288 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSME-MPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTH 288 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCC-CCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHH
Confidence 355677889999999999876643333 34567778777532 223444444433222111 11232210
Q ss_pred ----CCCCCEEE-----EeHHHHHHHHhcCCccCCccceEEEEccccCCC
Q 002183 156 ----SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 156 ----~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
-.+.++.| .|+..++....+-......+++||||=.+.|..
T Consensus 289 a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 289 AVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 01345555 355555443322111123578999999998863
No 425
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=87.75 E-value=1.6 Score=49.42 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=52.1
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-CeeEEecccccCCCCCEEEEeHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLVMTTE 167 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV~Tpe 167 (955)
-.|.+|++.++||+||++.|..--...-+....-+|.+.--++++.-.. . ++|| .-|.+||-..-.+ .
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~-~-eLFG~~kGaftGa~~~k~--G------- 167 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQE-A-ELFGHEKGAFTGAQGGKA--G------- 167 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHH-H-HHhccccceeecccCCcC--c-------
Confidence 5688999999999999998865443222211223444444444443322 2 2777 6688888322111 1
Q ss_pred HHHHHHhcCCccCCccceEEEEccccCCCC
Q 002183 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMKDR 197 (955)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~ 197 (955)
.+ -..+=+.+.+||+|.+.-.
T Consensus 168 lf---------e~A~GGtLfLDEI~~LP~~ 188 (403)
T COG1221 168 LF---------EQANGGTLFLDEIHRLPPE 188 (403)
T ss_pred hh---------eecCCCEEehhhhhhCCHh
Confidence 00 0123368999999999743
No 426
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=87.69 E-value=2.3 Score=49.62 Aligned_cols=89 Identities=12% Similarity=0.072 Sum_probs=56.5
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEE---Ee
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLV---MT 165 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV---~T 165 (955)
..|.-+++.+++|+|||..+...+.....++.+++|++.-- -..|+..+...+.-.. . .+.+ .+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE-s~~qi~~ra~rlg~~~----~--------~l~~~~e~~ 158 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE-SLQQIKMRAIRLGLPE----P--------NLYVLSETN 158 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC-CHHHHHHHHHHcCCCh----H--------HeEEcCCCC
Confidence 34678899999999999988776666666778899998653 3456555444321110 0 1111 13
Q ss_pred HHHHHHHHhcCCccCCccceEEEEccccCC
Q 002183 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
.+.+...+.. .+.++||||.+..+.
T Consensus 159 ~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 159 WEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred HHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 4555554432 246799999998764
No 427
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.68 E-value=2.4 Score=51.37 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCchHHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i 112 (955)
+.+|+.||.|+|||.++...+
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346899999999999876543
No 428
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=87.61 E-value=0.99 Score=49.64 Aligned_cols=49 Identities=27% Similarity=0.216 Sum_probs=37.9
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l 139 (955)
|+-+-+.+|+|+|||..++..+..+.+.+..++|+-|-.+|-....+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~l 101 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESL 101 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHT
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhc
Confidence 4567799999999999999988888888999999999998877655444
No 429
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=87.60 E-value=4.6 Score=46.54 Aligned_cols=118 Identities=15% Similarity=0.127 Sum_probs=59.8
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHH-H
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTE-I 168 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe-~ 168 (955)
.+++++++|+|||.++.--+.... ..|.+++++. +.|.-+.++.+.+.+..+ +..+..... ..|. .
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~g-vp~~~~~~~---------~~P~~i 170 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVG-VPVFALGKG---------QSPVEI 170 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcC-CceEecCCC---------CCHHHH
Confidence 477899999999987654443332 4566665554 345555555555544332 111111100 1232 2
Q ss_pred HHHHHhcCCccCCccceEEEEccccCCCCCChHHHH---HHHHhCCCcceEEEeccccC
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE---ESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~---~ii~~l~~~~~~v~lSAT~~ 224 (955)
..+.+.. ......++||+|=+-++... ...+. .+...+.+.--++.++||..
T Consensus 171 ~~~al~~--~~~~~~DvVIIDTaGr~~~d--~~l~~eL~~i~~~~~p~e~lLVvda~tg 225 (428)
T TIGR00959 171 ARRALEY--AKENGFDVVIVDTAGRLQID--EELMEELAAIKEILNPDEILLVVDAMTG 225 (428)
T ss_pred HHHHHHH--HHhcCCCEEEEeCCCccccC--HHHHHHHHHHHHhhCCceEEEEEeccch
Confidence 2222221 11245789999998766421 12222 22233334444667777754
No 430
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=87.59 E-value=0.9 Score=53.32 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (955)
.+.+++.+|+|+|||.++-
T Consensus 216 p~GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAK 234 (512)
T ss_pred CcceEEECCCCCcHHHHHH
Confidence 4679999999999999753
No 431
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.53 E-value=3.1 Score=51.61 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=22.7
Q ss_pred HHHHHHHh--cCCcEEEEcCCCCchHHHHHHHHH
Q 002183 82 RVSVACLE--RNESVLVSAHTSAGKTAVAEYAIA 113 (955)
Q Consensus 82 ~~ai~~l~--~g~~vlv~apTGsGKTl~~~~~i~ 113 (955)
.+.+..+. ...++++.+|+|+|||.++.....
T Consensus 196 ~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred HHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 34444443 356899999999999998765443
No 432
>PRK08840 replicative DNA helicase; Provisional
Probab=87.47 E-value=2.5 Score=49.41 Aligned_cols=107 Identities=20% Similarity=0.226 Sum_probs=58.1
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHH-HhcCCeEEEEccChhhHHHHHHHHHHhcCCe---eEEecccc---------
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDV---GLMTGDVT--------- 154 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~-l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~v---g~~tGd~~--------- 154 (955)
+..|+-+++.|.||.|||..++-.+... ...+..|+|.+.- .=..|+..++-.....+ .+..|..+
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~ 292 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLE-MPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISS 292 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHH
Confidence 3566778889999999998775443333 3457788888754 33455555544332211 11122111
Q ss_pred ----cCCCCCEEEE-----eHHHHHHHHhcCCccCCccceEEEEccccCC
Q 002183 155 ----LSPNASCLVM-----TTEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 155 ----~~~~~~IlV~-----Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
+....++.|- |+..++....+-......+++||||=.|.|.
T Consensus 293 a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 293 TMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 1112344442 4444443332211111257899999999885
No 433
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=87.36 E-value=1.3 Score=47.39 Aligned_cols=104 Identities=15% Similarity=0.196 Sum_probs=59.5
Q ss_pred HHHHHhcC-----CcEEEEcCCCCchHHHHHHHHHHHH-h-----cCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecc
Q 002183 84 SVACLERN-----ESVLVSAHTSAGKTAVAEYAIAMAF-R-----DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGD 152 (955)
Q Consensus 84 ai~~l~~g-----~~vlv~apTGsGKTl~~~~~i~~~l-~-----~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd 152 (955)
.++.++.| .-.=++++.|+|||..++-..+... . .+.+|+|+--......+-..++.+.++- ..+
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~----~~~ 101 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGL----DPE 101 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-----HH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcccc----ccc
Confidence 56666544 3455899999999986654433332 2 2578999987777777766666665530 000
Q ss_pred cccCCCCCEEE---EeHHHHHHHHhcCCcc--CCccceEEEEccccC
Q 002183 153 VTLSPNASCLV---MTTEILRGMLYRGSEV--LKEVAWVIFDEIHYM 194 (955)
Q Consensus 153 ~~~~~~~~IlV---~Tpe~L~~~l~~~~~~--l~~l~~vIiDEaH~l 194 (955)
... ..|.| .+.+.+...+..-... -.++++||||-+=.+
T Consensus 102 ~~l---~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 102 EIL---DNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp HHH---HTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred hhh---hceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 001 12322 3455555544322111 146899999997543
No 434
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=87.33 E-value=2.8 Score=45.57 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=66.4
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE--ccC--------hhhHHHHHHHHHHhcCCeeEEecccccCCCC
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT--SPL--------KALSNQKYRELHQEFKDVGLMTGDVTLSPNA 159 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l--~Pt--------kaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~ 159 (955)
.+.++++.+|-|||||..--..+...-..|.+.+++ -|+ +.++.|...++... +...|..+-
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~----~k~~gsfte---- 119 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI----VKSFGSFTE---- 119 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh----heeecccch----
Confidence 456899999999999976545444422234433332 222 34444444444332 111121110
Q ss_pred CEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC---CCcceEEEeccccC
Q 002183 160 SCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSATMS 224 (955)
Q Consensus 160 ~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l---~~~~~~v~lSAT~~ 224 (955)
+-+.|...+..+...-+.--.+|+||.|......|...+...+... ...+-++++|.-..
T Consensus 120 -----~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 120 -----NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred -----hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 2244555555554433333578999999887776666655554332 33455777776653
No 435
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.31 E-value=1.9 Score=52.16 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
+-+++.+|+|+|||.++-+
T Consensus 111 ~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKI 129 (637)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3489999999999997644
No 436
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.25 E-value=0.35 Score=50.64 Aligned_cols=97 Identities=15% Similarity=0.221 Sum_probs=48.7
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHHH--------------HHhcCCeeEEeccccc
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYREL--------------HQEFKDVGLMTGDVTL 155 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l--------------~~~~~~vg~~tGd~~~ 155 (955)
+..++|.||.|+|||...-.. ...+. .+..++|+.+...-.......+ ....+......- .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~ 95 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEF-INELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKI---S 95 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHH-HHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEE---E
T ss_pred CcEEEEEcCCcCCHHHHHHHH-HHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhh---h
Confidence 478999999999999864433 33332 2335677766554443333333 111111111000 0
Q ss_pred CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCC
Q 002183 156 SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 156 ~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
.........+...+...+..... + -+|||||+|++.
T Consensus 96 ~~~~~~~~~~l~~~~~~l~~~~~---~-~iiviDe~~~~~ 131 (234)
T PF01637_consen 96 KDLSEDSFSALERLLEKLKKKGK---K-VIIVIDEFQYLA 131 (234)
T ss_dssp CTS-GG-G--HHHHHHHHHHCHC---C-EEEEEETGGGGG
T ss_pred hcchhhHHHHHHHHHHHHHhcCC---c-EEEEEecHHHHh
Confidence 01112233344555555544322 1 589999999998
No 437
>PRK05595 replicative DNA helicase; Provisional
Probab=87.21 E-value=1.8 Score=50.46 Aligned_cols=106 Identities=21% Similarity=0.218 Sum_probs=57.6
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHH-HHhcCCeEEEEccChhhHHHHHHHHHHhcCCee---EEeccccc---------
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL--------- 155 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~-~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg---~~tGd~~~--------- 155 (955)
..|.-++|.|.||.|||..++--+.. +..+|.+|+|++.- .=..|+..++.....++. +..|..+.
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE-ms~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~ 277 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE-MSKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARA 277 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 45667888999999999877654443 45678889888654 223444444333222111 11222110
Q ss_pred ---CCCCCEEE-----EeHHHHHHHHhcCCccCCccceEEEEccccCCC
Q 002183 156 ---SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 156 ---~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
-.+.++.| .|++.++..+.+-.. -..+++||||=.|.|..
T Consensus 278 ~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 278 SGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSG 325 (444)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccC
Confidence 01123333 244445443322111 13588999999998864
No 438
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=87.20 E-value=0.58 Score=42.39 Aligned_cols=56 Identities=30% Similarity=0.426 Sum_probs=34.1
Q ss_pred HHHHhhcCCccCCCccchhhhhhhcccCCchhHHHHHHhhCCCCCCCH-HHHHHHhhc
Q 002183 767 SRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH-HQVAALASC 823 (955)
Q Consensus 767 ~~VL~~lgyid~~~~vt~KGrvA~eI~s~~eLlltEll~~g~f~~l~p-~eiaAllS~ 823 (955)
.+.|+.||.||+++.+|.-|+.++.+-. +.-+--.+++...|.-+++ --|||+||+
T Consensus 3 ~~~L~~Lgald~~~~lT~lG~~~~~lPl-~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~ 59 (102)
T PF04408_consen 3 LELLKSLGALDENGNLTPLGRKMSQLPL-DPRLAKMLLYGIQFGCLDEALIIAAILSV 59 (102)
T ss_dssp HHHHHHTTSB-TTS-B-HHHHHHTTSSS--HHHHHHHHHHHHCT-HHHHHHHHHHHTS
T ss_pred HHHHHHCCCCCCCCCcCHHHHHHHHCCC-chHhHhHhhhccccccHHHHHHHHHHHcC
Confidence 4679999999999999999999999985 4444444444444555333 334444443
No 439
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=87.15 E-value=0.49 Score=50.38 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=21.2
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAF 116 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l 116 (955)
+..|+.+++.+|.|+|||..+- .++..+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr-~I~n~l 40 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQ-SIANAI 40 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHH-HHHhcc
Confidence 4689999999999999997543 344433
No 440
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.13 E-value=8 Score=44.41 Aligned_cols=126 Identities=21% Similarity=0.226 Sum_probs=64.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHH-HhcC--CeEEEEccC-hhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEe
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMA-FRDK--QRVIYTSPL-KALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMT 165 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~-l~~~--~~vl~l~Pt-kaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~T 165 (955)
.|..+.+.+|||+|||.....-.... ...+ .-.+++..+ +.=+.++...+.+.++ +.. ..+.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilG-vp~------------~~v~~ 256 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLG-VSV------------RSIKD 256 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcC-Cce------------ecCCC
Confidence 45668899999999998754332222 2222 234455544 3333344444544432 111 12234
Q ss_pred HHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC----CCcceEEEeccccCChHHHHHHHhhh
Q 002183 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL----PPAIKMVFLSATMSNATQFAEWICHL 236 (955)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l----~~~~~~v~lSAT~~n~~~~~~~l~~~ 236 (955)
+..+...+.. +++.+.+++|.+=+.. +-..+.+-+..+ ++...++.+|||.. ..++.+++..+
T Consensus 257 ~~dl~~al~~----l~~~d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LVl~at~~-~~~~~~~~~~f 323 (420)
T PRK14721 257 IADLQLMLHE----LRGKHMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLLLNATSS-GDTLDEVISAY 323 (420)
T ss_pred HHHHHHHHHH----hcCCCEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEEEcCCCC-HHHHHHHHHHh
Confidence 4444433332 5677899999863221 112222222222 23456788999964 34455666544
No 441
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=87.06 E-value=1.7 Score=54.64 Aligned_cols=110 Identities=17% Similarity=0.180 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCCcEEEEcCCCCchHHHHHH---------------------------------HHHHHHhcCCeEEEEc
Q 002183 80 FQRVSVACLERNESVLVSAHTSAGKTAVAEY---------------------------------AIAMAFRDKQRVIYTS 126 (955)
Q Consensus 80 ~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~---------------------------------~i~~~l~~~~~vl~l~ 126 (955)
-|++.+..+..+-|||--..|=-=.|+---+ ||..-+.+|++|.|+.
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVH 810 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEe
Confidence 4777777777777777777676666663211 2344456799999999
Q ss_pred cChhhHHHHHHHHHHhcC--CeeEEecccc-----------cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEcccc
Q 002183 127 PLKALSNQKYRELHQEFK--DVGLMTGDVT-----------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHY 193 (955)
Q Consensus 127 PtkaLa~Q~~~~l~~~~~--~vg~~tGd~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~ 193 (955)
|..+=..++...++++.| .+++.+|... .+.+.+|+|||+ .+..| ..+.+...+||+-||+
T Consensus 811 NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----IIEtG-IDIPnANTiIIe~AD~ 884 (1139)
T COG1197 811 NRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----IIETG-IDIPNANTIIIERADK 884 (1139)
T ss_pred cchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----eeecC-cCCCCCceEEEecccc
Confidence 999999999999999999 7888888775 366899999997 23344 4578999999999998
Q ss_pred CC
Q 002183 194 MK 195 (955)
Q Consensus 194 l~ 195 (955)
++
T Consensus 885 fG 886 (1139)
T COG1197 885 FG 886 (1139)
T ss_pred cc
Confidence 75
No 442
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.00 E-value=0.92 Score=48.48 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcC-CeEEEE---------ccChhhHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYT---------SPLKALSNQK 135 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~-~~vl~l---------~PtkaLa~Q~ 135 (955)
.=++|.+|||||||..- .+++..+++. .+-|++ ...|.|.+|-
T Consensus 126 GLILVTGpTGSGKSTTl-AamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QR 178 (353)
T COG2805 126 GLILVTGPTGSGKSTTL-AAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQR 178 (353)
T ss_pred ceEEEeCCCCCcHHHHH-HHHHHHHhccCCcceEEecCchHhhhcchHhhhhHH
Confidence 34889999999999763 3455555442 222322 3457777773
No 443
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.98 E-value=2.6 Score=47.63 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~ 111 (955)
+.+++.||+|+|||..+...
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~l 56 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARIF 56 (355)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35789999999999876443
No 444
>PRK12608 transcription termination factor Rho; Provisional
Probab=86.97 E-value=1.1 Score=50.00 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHH---hcCCcEEEEcCCCCchHHHHHHHHHHHH
Q 002183 77 LDPFQRVSVACL---ERNESVLVSAHTSAGKTAVAEYAIAMAF 116 (955)
Q Consensus 77 l~~~Q~~ai~~l---~~g~~vlv~apTGsGKTl~~~~~i~~~l 116 (955)
+.+.-.++|+.+ -.|+..++.||.|+|||.+... ++..+
T Consensus 116 ~~~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~-la~~i 157 (380)
T PRK12608 116 SDDLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQ-IAAAV 157 (380)
T ss_pred CcchhHhhhhheeecCCCceEEEECCCCCCHHHHHHH-HHHHH
Confidence 335666788876 5899999999999999987654 34444
No 445
>PRK09165 replicative DNA helicase; Provisional
Probab=86.94 E-value=2.4 Score=50.18 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=57.4
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHh---------------cCCeEEEEccChhhHHHHHHHHHHhcCCe---eEEe
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFR---------------DKQRVIYTSPLKALSNQKYRELHQEFKDV---GLMT 150 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~---------------~~~~vl~l~PtkaLa~Q~~~~l~~~~~~v---g~~t 150 (955)
..|.-++|.|+||.|||..++--+..... .|..|+|++.- .=..|+..++......+ .+..
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~s~v~~~~i~~ 293 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQSEISSSKIRR 293 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhc
Confidence 45667889999999999876543333322 25678887543 33455555554432221 1122
Q ss_pred ccccc------------CCCCCEEE-----EeHHHHHHHHhcCCccCCccceEEEEccccCCC
Q 002183 151 GDVTL------------SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 151 Gd~~~------------~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
|..+- -...++.| .|++.+...+.+-.. -..+++||||=.|.|..
T Consensus 294 ~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 294 GKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRG 355 (497)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccC
Confidence 22210 01233443 255555544432211 13588999999998864
No 446
>PRK08760 replicative DNA helicase; Provisional
Probab=86.90 E-value=2.5 Score=49.63 Aligned_cols=131 Identities=20% Similarity=0.195 Sum_probs=71.1
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhcCCee---EEeccccc--------
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL-------- 155 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg---~~tGd~~~-------- 155 (955)
+..|.-++|.|.||.|||..++--+.... ..+..|+|.+.- .=..|+..++......+. +..|..+-
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~ 304 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME-MSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTG 304 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc-CCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHH
Confidence 35667788999999999987765554443 457778887653 234556666554433211 12222110
Q ss_pred ----CCCCCEEEE-----eHHHHHHHHhcCCccCCccceEEEEccccCCCC----CChHHHHHHHHhCC-----CcceEE
Q 002183 156 ----SPNASCLVM-----TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR----ERGVVWEESIIFLP-----PAIKMV 217 (955)
Q Consensus 156 ----~~~~~IlV~-----Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~----~rg~~~~~ii~~l~-----~~~~~v 217 (955)
-.+.++.|- |++.++....+-.. -..+++||||=.+.|... .+...+.++...|. -++.+|
T Consensus 305 a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi 383 (476)
T PRK08760 305 AIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVI 383 (476)
T ss_pred HHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCEEE
Confidence 012344433 55655544322111 135789999999988532 23333334433322 256666
Q ss_pred Eec
Q 002183 218 FLS 220 (955)
Q Consensus 218 ~lS 220 (955)
++|
T Consensus 384 ~ls 386 (476)
T PRK08760 384 ALS 386 (476)
T ss_pred Eee
Confidence 666
No 447
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.87 E-value=1.7 Score=49.71 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
...+++.+|+|+|||+.+-.
T Consensus 165 p~gvLL~GppGtGKT~lAka 184 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKA 184 (389)
T ss_pred CCceEEECCCCCChHHHHHH
Confidence 35799999999999997644
No 448
>CHL00176 ftsH cell division protein; Validated
Probab=86.87 E-value=2 Score=52.24 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~ 111 (955)
+.+++.+|+|+|||+.+-..
T Consensus 217 ~gVLL~GPpGTGKT~LAral 236 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAI 236 (638)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46999999999999987544
No 449
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=86.66 E-value=1.8 Score=44.07 Aligned_cols=54 Identities=28% Similarity=0.304 Sum_probs=35.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHh----------cCCeEEEEccChhhHHHHHHHHHHhcC
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFR----------DKQRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~----------~~~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
.|.-+++.||+|+|||....-.+..... .+.+|+|+..--. ..++.+.+...+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 5777999999999999876654444443 4568899877655 5567777776554
No 450
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.59 E-value=1 Score=54.25 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=24.8
Q ss_pred cCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEec
Q 002183 179 VLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 179 ~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lS 220 (955)
...+.+++||||+|+|.... ...+..++..-|+++.+|+.|
T Consensus 116 ~~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 116 SRSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred ccCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 35678999999999997421 112223333345566666655
No 451
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=86.53 E-value=2.9 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=19.0
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAF 116 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l 116 (955)
++..+++.+|+|+|||..+. +++..+
T Consensus 346 ~~~~lll~GppG~GKT~lAk-~iA~~l 371 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGK-SIAKAL 371 (775)
T ss_pred CCceEEEECCCCCCHHHHHH-HHHHHh
Confidence 35679999999999998763 334443
No 452
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=86.43 E-value=2 Score=45.30 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=29.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhc------CCeEEEEccCh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRD------KQRVIYTSPLK 129 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~------~~~vl~l~Ptk 129 (955)
.|.-+.+.+|+|+|||..+...++..... +..++|+.--.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 46778999999999999887665554433 36889987544
No 453
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.28 E-value=3.3 Score=50.04 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=24.7
Q ss_pred cCCccceEEEEccccCCCCCChHHHHHHHHhC---CCcceEEEec
Q 002183 179 VLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLS 220 (955)
Q Consensus 179 ~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l---~~~~~~v~lS 220 (955)
.+.+.++|||||+|.+.. ...+.++..+ |+..-+|+.+
T Consensus 124 ~~~~~KVvIIdEad~Lt~----~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLST----AAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred hcCCCEEEEEeChhhcCH----HHHHHHHHHHhCCCCCeEEEEEe
Confidence 467789999999999974 2344444444 3445555554
No 454
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=86.19 E-value=1.1 Score=52.72 Aligned_cols=48 Identities=23% Similarity=0.314 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhc-C-CcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEE
Q 002183 77 LDPFQRVSVACLER-N-ESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYT 125 (955)
Q Consensus 77 l~~~Q~~ai~~l~~-g-~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l 125 (955)
+.+.|.+.+..+.. . .-+++++|||||||... ++++..+.. +.+++.+
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~~~~~~iiTi 276 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLNTPERNILTV 276 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccCCCCCcEEEE
Confidence 56778888877643 3 34789999999999875 445555543 3344443
No 455
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=86.00 E-value=0.87 Score=48.18 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=53.9
Q ss_pred CCeEEEEccChhhHHHHHHHHHHhcC---CeeEEecc-ccc--------CCCCCEEEEeHHHHHHHHhcCCccCCccceE
Q 002183 119 KQRVIYTSPLKALSNQKYRELHQEFK---DVGLMTGD-VTL--------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (955)
Q Consensus 119 ~~~vl~l~PtkaLa~Q~~~~l~~~~~---~vg~~tGd-~~~--------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (955)
.+.+||++..--=|-++.+.++.+-+ .|+-+-+- ..+ ....+|.||||+|+..++..+...++++.+|
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~i 205 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKRI 205 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeEE
Confidence 36788888876667788888877632 22222111 111 2367899999999999999999999999999
Q ss_pred EEEccc
Q 002183 187 IFDEIH 192 (955)
Q Consensus 187 IiDEaH 192 (955)
|+|--|
T Consensus 206 vlD~s~ 211 (252)
T PF14617_consen 206 VLDWSY 211 (252)
T ss_pred EEcCCc
Confidence 999765
No 456
>COG1485 Predicted ATPase [General function prediction only]
Probab=85.92 E-value=4.5 Score=44.50 Aligned_cols=127 Identities=20% Similarity=0.244 Sum_probs=77.3
Q ss_pred cCCCCCCHHHHHHHHHHh------------cC-------------CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 72 TYSFELDPFQRVSVACLE------------RN-------------ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~------------~g-------------~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
.-.|.+++.|..++.++. .+ +.+-+.++.|.|||..- ........+.+ -.-+
T Consensus 21 ~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LM--D~Fy~~lp~~~-k~R~ 97 (367)
T COG1485 21 AGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLM--DLFYESLPGER-KRRL 97 (367)
T ss_pred cCCCCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHH--HHHHhhCCccc-cccc
Confidence 346778999998887651 11 46788999999999752 22222111111 1224
Q ss_pred cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHH
Q 002183 127 PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES 206 (955)
Q Consensus 127 PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~i 206 (955)
+..+-+.++++++...- |.. +.+ +.+.. ....+..++.|||.| +.|..-...+..+
T Consensus 98 HFh~FM~~vH~~l~~l~-------g~~------dpl---~~iA~-------~~~~~~~vLCfDEF~-VtDI~DAMiL~rL 153 (367)
T COG1485 98 HFHRFMARVHQRLHTLQ-------GQT------DPL---PPIAD-------ELAAETRVLCFDEFE-VTDIADAMILGRL 153 (367)
T ss_pred cHHHHHHHHHHHHHHHc-------CCC------Ccc---HHHHH-------HHHhcCCEEEeeeee-ecChHHHHHHHHH
Confidence 56677888888887753 222 110 11111 235678899999998 4554323344444
Q ss_pred HHh-CCCcceEEEeccccCC
Q 002183 207 IIF-LPPAIKMVFLSATMSN 225 (955)
Q Consensus 207 i~~-l~~~~~~v~lSAT~~n 225 (955)
+.. ++.++.++..|-|.|+
T Consensus 154 ~~~Lf~~GV~lvaTSN~~P~ 173 (367)
T COG1485 154 LEALFARGVVLVATSNTAPD 173 (367)
T ss_pred HHHHHHCCcEEEEeCCCChH
Confidence 433 4678999999999884
No 457
>PRK08006 replicative DNA helicase; Provisional
Probab=85.90 E-value=3.7 Score=48.12 Aligned_cols=132 Identities=20% Similarity=0.186 Sum_probs=70.4
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHH-HhcCCeEEEEccChhhHHHHHHHHHHhcCCee---EEecccc---------
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVT--------- 154 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~-l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg---~~tGd~~--------- 154 (955)
+..|.-+++.|.||.|||..++--+... ...+..|+|.+.- .=..|+..++-.....+. +..|..+
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~ 299 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE-MPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISG 299 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHH
Confidence 3556778889999999998776544443 3457788888654 334445444443322111 1122211
Q ss_pred ----cCCCCCEEEE-----eHHHHHHHHhcCCccCCccceEEEEccccCCCC----CChHHHHHHHHhCC-----CcceE
Q 002183 155 ----LSPNASCLVM-----TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR----ERGVVWEESIIFLP-----PAIKM 216 (955)
Q Consensus 155 ----~~~~~~IlV~-----Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~----~rg~~~~~ii~~l~-----~~~~~ 216 (955)
+-.+.++.|- |+..++....+-......+++||||=.|.+... .+...+.++...|. -++.+
T Consensus 300 a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipV 379 (471)
T PRK08006 300 TMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPV 379 (471)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeE
Confidence 1123445543 555554433221111135889999999988532 23333444433332 35667
Q ss_pred EEec
Q 002183 217 VFLS 220 (955)
Q Consensus 217 v~lS 220 (955)
|++|
T Consensus 380 i~Ls 383 (471)
T PRK08006 380 VALS 383 (471)
T ss_pred EEEE
Confidence 7776
No 458
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=85.53 E-value=1.1 Score=49.36 Aligned_cols=97 Identities=19% Similarity=0.171 Sum_probs=54.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHH------hcCCeEEEEccChhhHHHHHHHHHHhcC-CeeEEecccccCCCCCEE
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAF------RDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCL 162 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l------~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~Il 162 (955)
.|.-+.+.+++|+|||..+...+.... ..+.+++|+.---.+..+...++.+.++ +. +. . -.+|.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~-----~~-~--l~~i~ 166 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDP-----DA-V--LDNIL 166 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCCh-----HH-h--cCcEE
Confidence 346788999999999987765443332 1357899998766555444444444443 11 00 0 01233
Q ss_pred E---EeHHHHHHHHhcCCc--cCCccceEEEEccccC
Q 002183 163 V---MTTEILRGMLYRGSE--VLKEVAWVIFDEIHYM 194 (955)
Q Consensus 163 V---~Tpe~L~~~l~~~~~--~l~~l~~vIiDEaH~l 194 (955)
+ -+.+.+...+..-.. .-.++++||||=+-.+
T Consensus 167 ~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 167 YARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred EecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHh
Confidence 3 245554443322110 1136889999987644
No 459
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=85.51 E-value=3.1 Score=48.46 Aligned_cols=106 Identities=21% Similarity=0.216 Sum_probs=57.0
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhcCCee---EEeccccc---------
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL--------- 155 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg---~~tGd~~~--------- 155 (955)
..|.-++|.|+||+|||..+.--+.... ..|..|+|++.- .=..|+.+++.....++. +..|..+.
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE-m~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a 271 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE-MSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSA 271 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHH
Confidence 4567789999999999987765554443 457778888643 233444444433322111 11221110
Q ss_pred ---CCCCCEEE-----EeHHHHHHHHhcCCccCCccceEEEEccccCCC
Q 002183 156 ---SPNASCLV-----MTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 156 ---~~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
-.+.++.| .|++.+.+.+.+-.. -..+++||||=.+.+..
T Consensus 272 ~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~~ 319 (434)
T TIGR00665 272 AGKLSEAPLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMSG 319 (434)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCC
Confidence 01223444 244555443322111 12478999999888753
No 460
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.48 E-value=2.5 Score=53.60 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCCchHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~ 111 (955)
..+.++.+|+|+|||.++...
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~l 214 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGL 214 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHH
Confidence 468999999999999988643
No 461
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=85.48 E-value=3 Score=51.48 Aligned_cols=86 Identities=20% Similarity=0.147 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC----CeEEEEccChhhHHHHHHHHHHhcCCeeEEec
Q 002183 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK----QRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~----~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tG 151 (955)
.|++-|++|+... ...++|.|..|||||.+...-++..+..+ ..++.++=|+-.|.++..++.+..+.
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~~------ 73 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLGL------ 73 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhCc------
Confidence 4789999999866 56799999999999999888888887664 35777777777888888888887654
Q ss_pred ccccCCCCCEEEEeHHHHHHHH
Q 002183 152 DVTLSPNASCLVMTTEILRGML 173 (955)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l 173 (955)
.....+.|+|...+...+
T Consensus 74 ----~~~~~~~v~TfHs~~~~~ 91 (655)
T COG0210 74 ----PAAEGLTVGTFHSFALRI 91 (655)
T ss_pred ----ccccCcEEeeHHHHHHHH
Confidence 011117889988775433
No 462
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=85.41 E-value=0.88 Score=50.33 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=29.9
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhh
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKAL 131 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaL 131 (955)
+..+.++++++|||||||... .+++..+....+++++-.+.++
T Consensus 141 v~~~~~ili~G~tGsGKTTll-~al~~~~~~~~~iv~ied~~El 183 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL-KSLVDEIPKDERIITIEDTREI 183 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH-HHHHccCCccccEEEEcCcccc
Confidence 467899999999999999865 3344444455666666544443
No 463
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.41 E-value=9.6 Score=45.21 Aligned_cols=75 Identities=17% Similarity=0.103 Sum_probs=59.2
Q ss_pred CCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHH
Q 002183 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (955)
Q Consensus 329 ~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~ 408 (955)
+.++||.++++.-+.+++..|.+. +...++++||++++.+|.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~--------------------------------------f~~~v~vlhs~~~~~er~ 66 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYR--------------------------------------FGSQVAVLHSGLSDSEKL 66 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHH--------------------------------------hCCcEEEEECCCCHHHHH
Confidence 468999999999999988888642 112378999999999999
Q ss_pred HHHHHHhcCCccEEEEcccccccCCCCCcEEEEe
Q 002183 409 LVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 442 (955)
Q Consensus 409 ~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~ 442 (955)
.......+|..+|+|+|...-. ..+++..+||.
T Consensus 67 ~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIV 99 (505)
T TIGR00595 67 QAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIV 99 (505)
T ss_pred HHHHHHHcCCCCEEECChHHHc-CcccCCCEEEE
Confidence 9988889999999999976432 45667776663
No 464
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=85.35 E-value=1.9 Score=43.27 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=28.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccCh
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Ptk 129 (955)
.++.+|.+||||.-.+-.+...-..+.+++++-|..
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~ 39 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAI 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEEST
T ss_pred EEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 578899999999977666666666789999999974
No 465
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=85.08 E-value=1.1 Score=53.02 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=39.6
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEEccChhhHHHHHHHHHHh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
.|..++|.+++|+|||+.+.--+...+.+ |.+++|++-- +-..+..+....+
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~~ 72 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARSF 72 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHHc
Confidence 46789999999999999888777776665 7899999853 5555655555554
No 466
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=84.79 E-value=2.1 Score=51.38 Aligned_cols=54 Identities=31% Similarity=0.324 Sum_probs=43.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChh--hHHHHHHHHHHhc
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKA--LSNQKYRELHQEF 143 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Ptka--La~Q~~~~l~~~~ 143 (955)
...+.+|.++||+|||......+.+.++.|..++++=|-.. |..-++...+..+
T Consensus 179 ~~gHtlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD~el~~~~~~~~~~~G 234 (643)
T TIGR03754 179 RVGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDADLLKRMYAEAKRAG 234 (643)
T ss_pred ccCceEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhC
Confidence 35689999999999999999999999999999999999873 5555555554433
No 467
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=84.77 E-value=1.9 Score=48.21 Aligned_cols=96 Identities=14% Similarity=0.133 Sum_probs=52.7
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHH-Hh-----cCCeEEEEccChhhHHHHHHHHHHhcC-CeeEEecccccCCCCCEEE
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMA-FR-----DKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLV 163 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~-l~-----~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV 163 (955)
|.-+.+++++|+|||......++.. +. .+.+++|+..--.+..+...++.+.|+ +..-+ -.+|.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~--------l~~I~~ 197 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAV--------LDNIIY 197 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhh--------cCeEEE
Confidence 4567899999999998665443333 21 136899998866555554444444443 11000 012333
Q ss_pred E---eHHHHHHHHhcCCc--cCCccceEEEEccccC
Q 002183 164 M---TTEILRGMLYRGSE--VLKEVAWVIFDEIHYM 194 (955)
Q Consensus 164 ~---Tpe~L~~~l~~~~~--~l~~l~~vIiDEaH~l 194 (955)
. +++.+...+..-.. .-.++++||+|=+-.+
T Consensus 198 ~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital 233 (344)
T PLN03187 198 ARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIAL 233 (344)
T ss_pred ecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHh
Confidence 3 44544433322100 0135889999987644
No 468
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.64 E-value=4.6 Score=44.62 Aligned_cols=58 Identities=21% Similarity=0.337 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHH-HHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhH
Q 002183 73 YSFELDPFQRVSV-ACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132 (955)
Q Consensus 73 ~~f~l~~~Q~~ai-~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa 132 (955)
+++ +++.|..-+ .++..+++++++++||||||.. +.+++..+....+++.+=-|.++.
T Consensus 125 ~gt-~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~~rivtIEdt~E~~ 183 (312)
T COG0630 125 YGT-ISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPEERIVTIEDTPELK 183 (312)
T ss_pred cCC-CCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCchhcEEEEecccccc
Confidence 443 667776665 4468999999999999999974 467777777788888887776553
No 469
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=84.62 E-value=5.7 Score=47.66 Aligned_cols=88 Identities=22% Similarity=0.258 Sum_probs=46.7
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-CeeEEecccccCCCCCEEEEeH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLVMTT 166 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV~Tp 166 (955)
...+..|++.++||+|||.+|-+......+.+. -++.+.-.++...... ..+|+ .-|.++|..... +
T Consensus 216 a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~-pfv~i~c~~~~~~~~~--~~lfg~~~~~~~~~~~~~---------~ 283 (534)
T TIGR01817 216 ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKR-PFVKVNCAALSETLLE--SELFGHEKGAFTGAIAQR---------K 283 (534)
T ss_pred hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCC-CeEEeecCCCCHHHHH--HHHcCCCCCccCCCCcCC---------C
Confidence 356778999999999999987554333322222 3333333344333222 23455 223344432110 1
Q ss_pred HHHHHHHhcCCccCCccceEEEEccccCCC
Q 002183 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
+ .....+=+.+++||+|.+..
T Consensus 284 g---------~~~~a~~GtL~ldei~~L~~ 304 (534)
T TIGR01817 284 G---------RFELADGGTLFLDEIGEISP 304 (534)
T ss_pred C---------cccccCCCeEEEechhhCCH
Confidence 1 01112336899999999873
No 470
>PRK10865 protein disaggregation chaperone; Provisional
Probab=84.61 E-value=3 Score=52.77 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIA 113 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~ 113 (955)
..++++.+|+|+|||.++.....
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHH
Confidence 45899999999999998854433
No 471
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=84.53 E-value=0.94 Score=52.28 Aligned_cols=45 Identities=18% Similarity=0.204 Sum_probs=34.6
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSN 133 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~ 133 (955)
...++++|.|+||||||...-..+...+..+.+++++=|..++..
T Consensus 40 ~~~~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~~~ 84 (410)
T cd01127 40 AEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVS 84 (410)
T ss_pred hhhccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcchhH
Confidence 345799999999999998754344555567889999999877654
No 472
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.50 E-value=0.53 Score=51.41 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
...+.|++.+|+|+|||+.|
T Consensus 183 ~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCCceEeeCCCCCcHHHHH
Confidence 34578999999999999975
No 473
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=84.38 E-value=1.7 Score=48.52 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHH-hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhH
Q 002183 77 LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132 (955)
Q Consensus 77 l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa 132 (955)
+++.+.+.+..+ ..+.+++++++||||||... .++...+....+++++--+.+|.
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~~~riv~iEd~~El~ 218 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAPDERIVLVEDAAELR 218 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCCCCcEEEECCcceec
Confidence 556777777654 66789999999999999764 33444455567778877777763
No 474
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=84.35 E-value=3.9 Score=50.57 Aligned_cols=80 Identities=14% Similarity=0.054 Sum_probs=63.9
Q ss_pred CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHH
Q 002183 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (955)
Q Consensus 328 ~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R 407 (955)
.+.+++|.++|+.-|.+.+..+....-. +.-.++.+||+++..+|
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~-----------------------------------~~i~v~ll~G~~~~~~r 353 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEP-----------------------------------LGIRVALLTGSLKGKER 353 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-----------------------------------cCcEEEEEcCCCCHHHH
Confidence 4568999999999999998887652100 11237899999999999
Q ss_pred HHHHHHHhcCCccEEEEccc-ccccCCCCCcEEEEe
Q 002183 408 ELVELLFQEGLVKALFATET-FAMGLNMPAKTVVFT 442 (955)
Q Consensus 408 ~~v~~~F~~g~i~VLvaT~~-la~Gidip~~~vVi~ 442 (955)
..+.....+|...|+|+|.. +...++++.+.+||.
T Consensus 354 ~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 354 REILEAIASGEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred HHHHHHHhCCCCCEEEchHHHhcccchhcccceEEE
Confidence 99999999999999999964 455678888887663
No 475
>PRK13695 putative NTPase; Provisional
Probab=84.32 E-value=20 Score=35.74 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=20.2
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeE
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRV 122 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~v 122 (955)
.+++.+++|+|||..+...+......|.++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 578999999999998775433322235443
No 476
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=84.26 E-value=1.8 Score=43.13 Aligned_cols=45 Identities=22% Similarity=0.296 Sum_probs=33.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHH
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQ 141 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~ 141 (955)
++|.+++|||||..++-.+.. .+.+++|++..+++-..+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHH
Confidence 589999999999987765433 577999998888876555555433
No 477
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=84.24 E-value=2.3 Score=52.52 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=60.6
Q ss_pred CcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcC
Q 002183 315 SDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (955)
Q Consensus 315 ~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~g 394 (955)
.....+........+.++++.++|..-+.++++.|.+..-... .+.--
T Consensus 111 TTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--------------------------------~~~~~ 158 (1187)
T COG1110 111 TTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--------------------------------SLDVL 158 (1187)
T ss_pred hHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--------------------------------Cccee
Confidence 3444555555555668899999999999999998876321100 00111
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCccEEEEccccc
Q 002183 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFA 429 (955)
Q Consensus 395 i~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la 429 (955)
+. +||.|+..+|+.++++|.+|..+|||+|..|-
T Consensus 159 ~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 159 VV-YHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred ee-eccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 33 99999999999999999999999999998764
No 478
>PRK05636 replicative DNA helicase; Provisional
Probab=83.87 E-value=3.3 Score=48.95 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=26.8
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHH-HHhcCCeEEEEc
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTS 126 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~-~l~~~~~vl~l~ 126 (955)
..|.-+++.|.||.|||..++-.+.. +++++..++|.+
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fS 301 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFS 301 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44566788999999999876644433 345677777774
No 479
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=83.80 E-value=2.5 Score=51.16 Aligned_cols=46 Identities=13% Similarity=0.314 Sum_probs=28.1
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEE-EccChhhHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIY-TSPLKALSNQ 134 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~-l~PtkaLa~Q 134 (955)
+..|+.+-+++|||||||...-+-. .... ..+.+++ =.+.+.+...
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~-r~~~~~~G~I~idg~dI~~i~~~ 399 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLL-RLYDPTSGEILIDGIDIRDISLD 399 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh-ccCCCCCCeEEECCEehhhcCHH
Confidence 5788889999999999987653322 1222 2455555 2344444443
No 480
>PRK14873 primosome assembly protein PriA; Provisional
Probab=83.73 E-value=14 Score=45.32 Aligned_cols=138 Identities=14% Similarity=0.083 Sum_probs=85.9
Q ss_pred HHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeE
Q 002183 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIA 396 (955)
Q Consensus 317 ~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~ 396 (955)
...++...... +.++||.++....+.++...|....-. ..|+
T Consensus 177 yl~~i~~~l~~-Gk~vLvLvPEi~lt~q~~~rl~~~f~~-------------------------------------~~v~ 218 (665)
T PRK14873 177 LAAAAAATLRA-GRGALVVVPDQRDVDRLEAALRALLGA-------------------------------------GDVA 218 (665)
T ss_pred HHHHHHHHHHc-CCeEEEEecchhhHHHHHHHHHHHcCC-------------------------------------CcEE
Confidence 33444444443 467999999999999999888752110 1389
Q ss_pred eecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecce---eccCCCCcccCHHHHHHHhccCCCCCCC
Q 002183 397 VHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK---KWDGDSHRYIGSGEYIQMSGRAGRRGKD 473 (955)
Q Consensus 397 ~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~---~~d~~~~~~~s~~ey~Q~~GRaGR~G~~ 473 (955)
++||++++.+|........+|..+|+|.|-. +.=.-+++...||.... .|--......+..+..-+ ||-.
T Consensus 219 ~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS-AvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~--Ra~~---- 291 (665)
T PRK14873 219 VLSAGLGPADRYRRWLAVLRGQARVVVGTRS-AVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALL--RAHQ---- 291 (665)
T ss_pred EECCCCCHHHHHHHHHHHhCCCCcEEEEcce-eEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHH--HHHH----
Confidence 9999999999999999999999999999976 44456666666663222 121111111233332222 2222
Q ss_pred CceEEEEEeCCcccHHHHHHhHhCCCC
Q 002183 474 DRGICIIMVDEQMEMNTLKDMVLGKPA 500 (955)
Q Consensus 474 ~~g~~ii~~~~~~~~~~~~~l~~~~~~ 500 (955)
.|..+++.+..++.+.+.....|...
T Consensus 292 -~~~~lvLgSaTPSles~~~~~~g~~~ 317 (665)
T PRK14873 292 -HGCALLIGGHARTAEAQALVESGWAH 317 (665)
T ss_pred -cCCcEEEECCCCCHHHHHHHhcCcce
Confidence 35556666555556665555555433
No 481
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=83.68 E-value=1.5 Score=45.10 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=23.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHh-c-CCeEEEEccChhh
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFR-D-KQRVIYTSPLKAL 131 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~-~-~~~vl~l~PtkaL 131 (955)
-+++++|||||||... .+++..+. . +.+++.+--..++
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~~~~~~~i~t~e~~~E~ 42 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYINKNKTHHILTIEDPIEF 42 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhhhcCCcEEEEEcCCccc
Confidence 4789999999999886 34444443 2 3455555443343
No 482
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=83.61 E-value=2.7 Score=50.00 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=73.1
Q ss_pred CCCCCHHHHHHHHHH--------hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-
Q 002183 74 SFELDPFQRVSVACL--------ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK- 144 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l--------~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~- 144 (955)
-|-+..+-.+.+..+ .+|+-+..++|+|-|||-++ -.|+.++.+. +|.
T Consensus 413 HYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~-kSIA~ALnRk----------------------FfRf 469 (906)
T KOG2004|consen 413 HYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIA-KSIARALNRK----------------------FFRF 469 (906)
T ss_pred ccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHH-HHHHHHhCCc----------------------eEEE
Confidence 455778888888776 35677788999999999875 3444443332 122
Q ss_pred CeeEEecccccCCCCCEEEE-eHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC
Q 002183 145 DVGLMTGDVTLSPNASCLVM-TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (955)
Q Consensus 145 ~vg~~tGd~~~~~~~~IlV~-Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l 210 (955)
.+|-++--..+....+-.|+ -|+++.+.|.+-.. +=-++.+||+|.++....|.--..++..|
T Consensus 470 SvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t---~NPliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 470 SVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT---ENPLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred eccccccHHhhcccceeeeccCChHHHHHHHhhCC---CCceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 45555555555555555564 68999988865332 12389999999998655665555555555
No 483
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=83.42 E-value=1.2 Score=53.50 Aligned_cols=57 Identities=12% Similarity=-0.089 Sum_probs=44.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEE
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLM 149 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~ 149 (955)
..++++.||||||||..+.+|-+.. -+..+||+=|--++......-.++.+.+|-++
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~--~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vf 214 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLF--WEDSVVVHDIKLENYELTSGWREKQGQKVFVW 214 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHh--CCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEE
Confidence 3579999999999999999987655 35679999999999987776665543355544
No 484
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=83.29 E-value=8.7 Score=46.08 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~ 111 (955)
+.+|++||.|.|||.++..-
T Consensus 39 hayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34789999999999987553
No 485
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=83.22 E-value=9.3 Score=43.01 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=44.0
Q ss_pred EEEcCCCCchHHHHHHH-HHHHHhcCC-eEEEEccChhhHHHH----HHHHHHhcCC---eeEE-ecccc--cCCCCCEE
Q 002183 95 LVSAHTSAGKTAVAEYA-IAMAFRDKQ-RVIYTSPLKALSNQK----YRELHQEFKD---VGLM-TGDVT--LSPNASCL 162 (955)
Q Consensus 95 lv~apTGsGKTl~~~~~-i~~~l~~~~-~vl~l~PtkaLa~Q~----~~~l~~~~~~---vg~~-tGd~~--~~~~~~Il 162 (955)
++.++.|+|||.+.... +..++.... +.++++|+..-+.+. ...+.....+ ...- ..+.. ......|.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~i~ 80 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKIILPNGSRIQ 80 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEEETTS-EEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEEecCceEEE
Confidence 46789999999886654 444455443 444444665544442 2333333332 1111 11111 12334455
Q ss_pred EEeHHH---HHHHHhcCCccCCccceEEEEccccCCCC
Q 002183 163 VMTTEI---LRGMLYRGSEVLKEVAWVIFDEIHYMKDR 197 (955)
Q Consensus 163 V~Tpe~---L~~~l~~~~~~l~~l~~vIiDEaH~l~d~ 197 (955)
+.+... .... ++ ..++++|+||+-.+.+.
T Consensus 81 ~~~~~~~~~~~~~--~G----~~~~~i~iDE~~~~~~~ 112 (384)
T PF03237_consen 81 FRGADSPDSGDNI--RG----FEYDLIIIDEAAKVPDD 112 (384)
T ss_dssp EES-----SHHHH--HT----S--SEEEEESGGGSTTH
T ss_pred Eeccccccccccc--cc----cccceeeeeecccCchH
Confidence 555331 1111 12 46789999999888653
No 486
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=83.01 E-value=1.5 Score=44.99 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~ 111 (955)
-++++++|+|.|||......
T Consensus 49 P~liisGpPG~GKTTsi~~L 68 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCL 68 (333)
T ss_pred CceEeeCCCCCchhhHHHHH
Confidence 47999999999999986543
No 487
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=82.89 E-value=2.9 Score=41.72 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=23.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
+++.+++|+|||..+.-........+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 578999999999987655544445566776554
No 488
>PRK13764 ATPase; Provisional
Probab=82.87 E-value=1.7 Score=52.02 Aligned_cols=42 Identities=29% Similarity=0.476 Sum_probs=27.8
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEE-EEccChhh
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVI-YTSPLKAL 131 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl-~l~PtkaL 131 (955)
..+.++++++|||||||... .+++..+....+.+ .+--.+++
T Consensus 255 ~~~~~ILIsG~TGSGKTTll-~AL~~~i~~~~riV~TiEDp~El 297 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFA-QALAEFYADMGKIVKTMESPRDL 297 (602)
T ss_pred hcCCEEEEECCCCCCHHHHH-HHHHHHHhhCCCEEEEECCCccc
Confidence 45778999999999999865 45555555544544 44333444
No 489
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.62 E-value=8.7 Score=45.24 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=15.5
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 002183 94 VLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i 112 (955)
.+++||.|+|||.++.+-.
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999998875543
No 490
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=82.53 E-value=2.6 Score=51.72 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHH--HHhcCCeEEEEccChhhHHHHHHHHHHhcC
Q 002183 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAM--AFRDKQRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~--~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
.++|-|.+||..-.+.....|++|+|+|||-++.--+.. +-...+++++++...+-.||.++.+.+.--
T Consensus 738 ~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d~ 808 (1320)
T KOG1806|consen 738 KFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALDV 808 (1320)
T ss_pred ccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhccc
Confidence 378999999999888889999999999999887654433 324478999999999999998888876533
No 491
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.35 E-value=1.6 Score=48.26 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchHHHH
Q 002183 92 ESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~ 108 (955)
+|++..+|+|+|||+++
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999975
No 492
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=82.28 E-value=2.1 Score=48.91 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=32.2
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q 134 (955)
...+++++.|.||||||.+.--.+.....+|.++||.=|.-+....
T Consensus 13 ~e~~~~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKGEFTER 58 (386)
T ss_dssp GGGG-EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETTHHHHH
T ss_pred hhhCcEEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCchHHHH
Confidence 3457899999999999986554455556778899999898666443
No 493
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=82.24 E-value=17 Score=36.68 Aligned_cols=51 Identities=8% Similarity=0.148 Sum_probs=30.0
Q ss_pred cceEEEEccccCCCCCC-hHHHHHHHHhCCCcceEEEeccccCCh-HHHHHHH
Q 002183 183 VAWVIFDEIHYMKDRER-GVVWEESIIFLPPAIKMVFLSATMSNA-TQFAEWI 233 (955)
Q Consensus 183 l~~vIiDEaH~l~d~~r-g~~~~~ii~~l~~~~~~v~lSAT~~n~-~~~~~~l 233 (955)
-+++||--.|.....++ -.++.+-....+++.+++++|+.=... +++.+|+
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i 196 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFI 196 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHH
Confidence 45666555554433333 134455566778899999999986532 4444444
No 494
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.95 E-value=3.4 Score=49.50 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=33.1
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHh--cCCeEE-EEccChhhHHHHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFR--DKQRVI-YTSPLKALSNQKYR 137 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~--~~~~vl-~l~PtkaLa~Q~~~ 137 (955)
+..|+.+-+++|.|+|||.++-+ ++.+- ..++++ ==.|++.+-.++++
T Consensus 491 i~pGe~vALVGPSGsGKSTiasL--L~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASL--LLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHH--HHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 36788999999999999998644 33332 234433 23688887777665
No 495
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=81.62 E-value=1.5 Score=48.78 Aligned_cols=74 Identities=12% Similarity=0.020 Sum_probs=44.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRG 171 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~ 171 (955)
.-+++.+|.|+|||+.+....... +...+.++.. +|.. =.++-+|++..
T Consensus 149 lgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~-eL~s---------------------------k~vGEsEk~IR 197 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAG-ELES---------------------------ENAGEPGKLIR 197 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHH-Hhhc---------------------------CcCCcHHHHHH
Confidence 457889999999999876544333 4333443322 1111 13567777766
Q ss_pred HHhcCCcc----CCccceEEEEccccCCC
Q 002183 172 MLYRGSEV----LKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 172 ~l~~~~~~----l~~l~~vIiDEaH~l~d 196 (955)
.+++.... -..-.+|+|||+|-+..
T Consensus 198 ~~F~~A~~~a~~~~aPcVLFIDEIDA~~g 226 (413)
T PLN00020 198 QRYREAADIIKKKGKMSCLFINDLDAGAG 226 (413)
T ss_pred HHHHHHHHHhhccCCCeEEEEehhhhcCC
Confidence 55543221 12457999999997764
No 496
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=81.27 E-value=4.1 Score=45.49 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=25.1
Q ss_pred cCCccceEEEEccccCCCCCChHHHHHHHHhC---CCcceEEEecc
Q 002183 179 VLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSA 221 (955)
Q Consensus 179 ~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l---~~~~~~v~lSA 221 (955)
.....+++||||+|.+... ....++..+ |+++.+|+.|.
T Consensus 107 ~~~~~kvviI~~a~~~~~~----a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 107 VESNKKVYIIEHADKMTAS----AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred cccCceEEEeehHhhhCHH----HHHHHHHHhcCCCCCceEEEEeC
Confidence 4567899999999999743 233344433 45666666443
No 497
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=81.04 E-value=2.5 Score=46.92 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=25.2
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
.|+.+|+++|+|+|||..+ ++|++.|..+....-++
T Consensus 49 aGr~iLiaGppGtGKTAlA-~~ia~eLG~~~PF~~is 84 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALA-MAIAKELGEDVPFVSIS 84 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHH-HHHHHHCTTTS-EEEEE
T ss_pred cCcEEEEeCCCCCCchHHH-HHHHHHhCCCCCeeEcc
Confidence 5788999999999999876 67777776665444443
No 498
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=80.92 E-value=0.66 Score=46.57 Aligned_cols=42 Identities=29% Similarity=0.282 Sum_probs=27.4
Q ss_pred CCCCCEEEEeHHHHHHHHhcCCc--cCCccceEEEEccccCCCC
Q 002183 156 SPNASCLVMTTEILRGMLYRGSE--VLKEVAWVIFDEIHYMKDR 197 (955)
Q Consensus 156 ~~~~~IlV~Tpe~L~~~l~~~~~--~l~~l~~vIiDEaH~l~d~ 197 (955)
...++|+|+++.-|.+...+... ...+-.+|||||||.+.+.
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 34789999999877654332221 2234579999999998753
No 499
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=80.86 E-value=22 Score=39.00 Aligned_cols=128 Identities=13% Similarity=0.175 Sum_probs=76.1
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (955)
.+++++..|+|||....=.......+|.+|++.+ -.||=|.++.+.|.+..+ +.++.+... ...+.| ..
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~g-v~vI~~~~G-~DpAaV-------af 211 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLG-VPVISGKEG-ADPAAV-------AF 211 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhC-CeEEccCCC-CCcHHH-------HH
Confidence 4678999999999976555555556788877766 458888888888887754 334444211 111222 22
Q ss_pred HHHhcCCccCCccceEEEEccccCCCCCChHHHH---HHHHhCCC------cceEEEeccccC-ChHHHHHHH
Q 002183 171 GMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE---ESIIFLPP------AIKMVFLSATMS-NATQFAEWI 233 (955)
Q Consensus 171 ~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~---~ii~~l~~------~~~~v~lSAT~~-n~~~~~~~l 233 (955)
+-+... .-+++++|++|=|-+|-+. ...++ .+.+-+.+ +--++.+=||.. |+.+-+..+
T Consensus 212 DAi~~A--kar~~DvvliDTAGRLhnk--~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F 280 (340)
T COG0552 212 DAIQAA--KARGIDVVLIDTAGRLHNK--KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF 280 (340)
T ss_pred HHHHHH--HHcCCCEEEEeCcccccCc--hhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH
Confidence 222222 1457889999999988764 23333 33333322 234666689987 443333333
No 500
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=80.71 E-value=1.4 Score=35.64 Aligned_cols=19 Identities=21% Similarity=0.515 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~ 108 (955)
.|...++.+|+|||||.+.
T Consensus 22 ~g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3457999999999999874
Done!