Query 002183
Match_columns 955
No_of_seqs 475 out of 3751
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 15:55:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l9o_A ATP-dependent RNA helic 100.0 3E-152 1E-156 1437.3 72.8 907 38-955 154-1108(1108)
2 2xgj_A ATP-dependent RNA helic 100.0 2E-149 8E-154 1400.2 95.8 911 32-955 50-1010(1010)
3 4a4z_A Antiviral helicase SKI2 100.0 7E-143 2E-147 1342.2 86.6 880 65-955 28-997 (997)
4 4f92_B U5 small nuclear ribonu 100.0 3E-52 1E-56 543.6 38.1 420 67-538 68-527 (1724)
5 4f92_B U5 small nuclear ribonu 100.0 8.4E-52 2.9E-56 539.4 34.2 402 74-536 923-1360(1724)
6 2va8_A SSO2462, SKI2-type heli 100.0 4.5E-49 1.5E-53 485.4 53.5 396 62-507 15-431 (715)
7 2zj8_A DNA helicase, putative 100.0 6.7E-49 2.3E-53 483.7 44.6 425 60-540 6-447 (720)
8 2p6r_A Afuhel308 helicase; pro 100.0 3E-48 1E-52 476.5 37.2 414 67-539 15-447 (702)
9 2db3_A ATP-dependent RNA helic 100.0 9.6E-46 3.3E-50 428.4 39.1 339 62-503 63-428 (434)
10 2j0s_A ATP-dependent RNA helic 100.0 7.5E-44 2.6E-48 410.4 33.8 339 63-502 45-402 (410)
11 2i4i_A ATP-dependent RNA helic 100.0 3.1E-43 1.1E-47 406.0 33.4 319 65-485 25-383 (417)
12 1s2m_A Putative ATP-dependent 100.0 4.5E-43 1.5E-47 402.4 34.0 327 65-494 31-373 (400)
13 3eiq_A Eukaryotic initiation f 100.0 1.3E-43 4.5E-48 408.7 27.2 320 65-485 50-387 (414)
14 1xti_A Probable ATP-dependent 100.0 2.8E-42 9.4E-47 394.4 35.3 328 65-494 18-366 (391)
15 3pey_A ATP-dependent RNA helic 100.0 4.8E-42 1.6E-46 392.7 36.7 332 65-493 15-364 (395)
16 3fht_A ATP-dependent RNA helic 100.0 4.5E-42 1.6E-46 395.4 36.7 333 63-492 33-386 (412)
17 3i5x_A ATP-dependent RNA helic 100.0 2.1E-42 7.3E-47 414.9 34.3 341 63-495 80-458 (563)
18 1hv8_A Putative ATP-dependent 100.0 5.2E-42 1.8E-46 388.3 34.4 317 64-485 15-345 (367)
19 2z0m_A 337AA long hypothetical 100.0 4.1E-42 1.4E-46 384.4 31.6 304 68-483 7-321 (337)
20 3sqw_A ATP-dependent RNA helic 100.0 8.5E-42 2.9E-46 410.2 34.2 345 62-496 28-408 (579)
21 3fmp_B ATP-dependent RNA helic 100.0 4.4E-43 1.5E-47 412.2 19.4 323 66-485 103-446 (479)
22 2v1x_A ATP-dependent DNA helic 100.0 1.6E-41 5.4E-46 404.5 31.4 325 66-496 33-384 (591)
23 1oyw_A RECQ helicase, ATP-depe 100.0 4E-41 1.4E-45 397.2 32.6 321 66-496 14-353 (523)
24 1fuu_A Yeast initiation factor 100.0 6.5E-43 2.2E-47 400.0 15.9 322 65-485 31-366 (394)
25 3oiy_A Reverse gyrase helicase 100.0 1.5E-41 5.3E-46 391.5 26.0 317 66-495 11-375 (414)
26 3fho_A ATP-dependent RNA helic 100.0 6.6E-41 2.3E-45 395.3 21.9 338 71-503 135-491 (508)
27 4a2p_A RIG-I, retinoic acid in 100.0 5.4E-38 1.9E-42 376.1 31.9 370 73-485 4-508 (556)
28 4ddu_A Reverse gyrase; topoiso 100.0 5.9E-38 2E-42 396.3 29.6 317 68-493 70-500 (1104)
29 3tbk_A RIG-I helicase domain; 100.0 3.5E-37 1.2E-41 368.8 29.8 369 74-485 2-507 (555)
30 4gl2_A Interferon-induced heli 100.0 6.2E-37 2.1E-41 377.1 29.9 368 73-485 4-520 (699)
31 1wp9_A ATP-dependent RNA helic 100.0 2.7E-36 9.3E-41 354.3 34.0 357 74-485 7-475 (494)
32 2ykg_A Probable ATP-dependent 100.0 9.4E-37 3.2E-41 375.3 27.0 370 70-485 6-516 (696)
33 4a2q_A RIG-I, retinoic acid in 100.0 3.2E-36 1.1E-40 374.4 31.5 367 72-485 243-749 (797)
34 1gku_B Reverse gyrase, TOP-RG; 100.0 1.9E-36 6.4E-41 383.1 20.4 318 65-496 46-467 (1054)
35 1gm5_A RECG; helicase, replica 100.0 2.3E-36 7.8E-41 367.2 20.3 307 65-483 357-695 (780)
36 2fwr_A DNA repair protein RAD2 100.0 8.7E-36 3E-40 349.5 22.7 341 72-485 89-454 (472)
37 3rc3_A ATP-dependent RNA helic 100.0 3.3E-35 1.1E-39 351.8 27.7 319 65-504 117-462 (677)
38 2oca_A DAR protein, ATP-depend 100.0 1.1E-35 3.6E-40 352.3 23.0 323 74-474 111-446 (510)
39 2eyq_A TRCF, transcription-rep 100.0 1.2E-34 4E-39 368.7 32.4 308 66-485 593-922 (1151)
40 4a2w_A RIG-I, retinoic acid in 100.0 3.2E-35 1.1E-39 369.1 25.4 365 74-485 246-749 (936)
41 1tf5_A Preprotein translocase 100.0 2.6E-34 8.8E-39 341.5 22.8 356 72-484 79-546 (844)
42 2jlq_A Serine protease subunit 100.0 8.1E-35 2.8E-39 337.7 17.1 288 77-483 5-309 (451)
43 2xau_A PRE-mRNA-splicing facto 100.0 5.4E-34 1.8E-38 348.9 20.2 324 74-485 91-443 (773)
44 3o8b_A HCV NS3 protease/helica 100.0 2.5E-34 8.7E-39 339.6 16.4 288 70-485 211-514 (666)
45 2whx_A Serine protease/ntpase/ 100.0 4.8E-34 1.7E-38 341.0 17.6 285 77-483 172-476 (618)
46 2fsf_A Preprotein translocase 100.0 1.1E-32 3.7E-37 326.4 24.5 350 71-484 69-584 (853)
47 2wv9_A Flavivirin protease NS2 100.0 4.6E-33 1.6E-37 334.4 16.5 288 76-482 215-530 (673)
48 2v6i_A RNA helicase; membrane, 100.0 3E-32 1E-36 314.1 22.3 271 90-482 1-288 (431)
49 1yks_A Genome polyprotein [con 100.0 1.7E-32 5.8E-37 316.7 19.1 272 88-482 5-296 (440)
50 1nkt_A Preprotein translocase 100.0 6.8E-32 2.3E-36 319.6 24.5 350 71-483 106-617 (922)
51 2z83_A Helicase/nucleoside tri 100.0 1E-32 3.4E-37 320.6 14.9 278 85-484 15-312 (459)
52 3h1t_A Type I site-specific re 100.0 2.3E-31 8E-36 320.4 26.9 328 74-472 176-545 (590)
53 3dmq_A RNA polymerase-associat 100.0 7.2E-31 2.5E-35 329.9 32.4 378 74-499 151-629 (968)
54 1z63_A Helicase of the SNF2/RA 100.0 1.2E-28 4.2E-33 290.9 33.4 358 73-500 34-468 (500)
55 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 5.2E-26 1.8E-30 283.2 33.4 337 75-484 270-708 (1038)
56 3fe2_A Probable ATP-dependent 99.9 3.3E-27 1.1E-31 250.9 17.6 182 63-246 37-238 (242)
57 1q0u_A Bstdead; DEAD protein, 99.9 6.6E-27 2.2E-31 244.6 17.5 185 63-249 12-215 (219)
58 3iuy_A Probable ATP-dependent 99.9 1E-26 3.4E-31 244.8 18.9 175 68-244 33-227 (228)
59 1z3i_X Similar to RAD54-like; 99.9 3.1E-25 1E-29 268.1 33.8 357 74-485 53-528 (644)
60 1vec_A ATP-dependent RNA helic 99.9 2.4E-26 8.3E-31 237.8 20.4 179 63-243 11-205 (206)
61 3mwy_W Chromo domain-containin 99.9 3.2E-25 1.1E-29 274.7 33.0 364 73-491 233-691 (800)
62 2oxc_A Probable ATP-dependent 99.9 2.7E-26 9.2E-31 241.9 17.7 179 63-243 32-226 (230)
63 3bor_A Human initiation factor 99.9 2.5E-26 8.6E-31 243.2 17.3 178 65-244 40-233 (237)
64 3fmo_B ATP-dependent RNA helic 99.9 6.2E-26 2.1E-30 248.4 20.2 183 60-244 97-296 (300)
65 2gxq_A Heat resistant RNA depe 99.9 7.2E-26 2.5E-30 234.4 19.0 177 65-243 11-203 (207)
66 2pl3_A Probable ATP-dependent 99.9 7E-26 2.4E-30 239.7 18.9 180 63-244 33-231 (236)
67 1qde_A EIF4A, translation init 99.9 6.9E-26 2.4E-30 237.7 18.7 178 65-244 24-215 (224)
68 3ly5_A ATP-dependent RNA helic 99.9 4.2E-26 1.4E-30 245.1 17.1 167 68-236 67-253 (262)
69 1wrb_A DJVLGB; RNA helicase, D 99.9 2.4E-25 8.3E-30 238.2 22.6 181 63-245 31-239 (253)
70 3ber_A Probable ATP-dependent 99.9 1.5E-25 5.3E-30 238.8 18.8 180 63-244 51-246 (249)
71 3dkp_A Probable ATP-dependent 99.9 2.7E-25 9.4E-30 236.5 17.5 180 65-246 39-241 (245)
72 1t6n_A Probable ATP-dependent 99.9 3.1E-25 1.1E-29 232.1 17.4 177 65-243 24-218 (220)
73 3jux_A Protein translocase sub 99.9 1.2E-23 4.1E-28 243.9 28.7 119 317-484 460-588 (822)
74 1c4o_A DNA nucleotide excision 99.9 2.6E-22 9E-27 242.1 27.9 112 328-485 438-550 (664)
75 2d7d_A Uvrabc system protein B 99.9 1E-20 3.5E-25 228.2 29.6 112 328-485 444-556 (661)
76 2ipc_A Preprotein translocase 99.9 2.1E-19 7.2E-24 212.2 32.7 125 71-197 74-218 (997)
77 3b6e_A Interferon-induced heli 99.9 3.3E-21 1.1E-25 200.5 15.1 151 72-222 29-216 (216)
78 1rif_A DAR protein, DNA helica 99.8 1.6E-20 5.3E-25 204.1 16.0 146 75-227 112-266 (282)
79 2hjv_A ATP-dependent RNA helic 99.8 4.5E-20 1.5E-24 183.1 14.6 128 316-493 22-149 (163)
80 2vl7_A XPD; helicase, unknown 99.8 2.3E-19 7.8E-24 212.3 22.9 120 73-195 4-188 (540)
81 3llm_A ATP-dependent RNA helic 99.8 4.6E-20 1.6E-24 194.7 14.2 159 71-234 56-228 (235)
82 2rb4_A ATP-dependent RNA helic 99.8 8.6E-20 2.9E-24 183.3 14.3 118 319-485 24-147 (175)
83 1fuk_A Eukaryotic initiation f 99.8 8.7E-20 3E-24 181.4 13.4 139 317-504 18-158 (165)
84 3eaq_A Heat resistant RNA depe 99.8 3.8E-19 1.3E-23 184.3 17.9 123 314-485 16-138 (212)
85 1t5i_A C_terminal domain of A 99.8 1.1E-19 3.7E-24 181.9 13.2 121 316-485 18-138 (172)
86 2jgn_A DBX, DDX3, ATP-dependen 99.8 2.5E-19 8.5E-24 181.4 12.6 138 316-502 32-172 (185)
87 2fz4_A DNA repair protein RAD2 99.8 1.1E-18 3.7E-23 184.1 16.9 142 72-227 89-232 (237)
88 2p6n_A ATP-dependent RNA helic 99.8 6.4E-19 2.2E-23 179.1 13.3 136 316-501 42-180 (191)
89 3i32_A Heat resistant RNA depe 99.8 4E-18 1.4E-22 185.0 18.5 122 315-485 14-135 (300)
90 3crv_A XPD/RAD3 related DNA he 99.7 3.2E-16 1.1E-20 186.0 31.4 120 74-196 1-187 (551)
91 2yjt_D ATP-dependent RNA helic 99.6 1.9E-19 6.7E-24 179.8 0.0 118 319-485 20-137 (170)
92 4a15_A XPD helicase, ATP-depen 99.6 1.6E-14 5.5E-19 172.7 21.8 68 75-142 2-74 (620)
93 1z5z_A Helicase of the SNF2/RA 99.5 6.5E-14 2.2E-18 150.0 11.1 123 316-485 97-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.6 1.3E-07 4.5E-12 112.9 11.2 138 78-221 151-297 (608)
95 3e1s_A Exodeoxyribonuclease V, 98.3 2.4E-06 8.3E-11 100.9 13.9 123 74-220 187-313 (574)
96 3upu_A ATP-dependent DNA helic 98.3 5.1E-06 1.8E-10 95.9 13.9 124 73-220 21-162 (459)
97 4b3f_X DNA-binding protein smu 98.2 6.2E-06 2.1E-10 99.5 12.1 70 76-145 189-259 (646)
98 2gk6_A Regulator of nonsense t 98.0 2.8E-05 9.6E-10 93.2 13.8 68 76-143 180-248 (624)
99 2xzl_A ATP-dependent helicase 98.0 2.4E-05 8.2E-10 95.8 12.9 68 76-143 360-428 (802)
100 2wjy_A Regulator of nonsense t 97.9 6.8E-05 2.3E-09 91.8 13.4 68 76-143 356-424 (800)
101 3lfu_A DNA helicase II; SF1 he 97.5 0.00049 1.7E-08 83.1 13.5 67 76-144 9-79 (647)
102 2o0j_A Terminase, DNA packagin 97.4 0.0014 4.8E-08 72.7 14.8 126 73-209 160-298 (385)
103 3cpe_A Terminase, DNA packagin 97.2 0.0026 8.9E-08 75.6 14.8 140 73-224 160-314 (592)
104 3ec2_A DNA replication protein 96.9 0.0046 1.6E-07 61.0 11.0 118 78-225 16-145 (180)
105 2b8t_A Thymidine kinase; deoxy 96.8 0.0018 6.2E-08 66.3 7.3 93 89-195 10-102 (223)
106 3vkw_A Replicase large subunit 96.8 0.0035 1.2E-07 70.4 9.8 105 93-220 163-267 (446)
107 1xx6_A Thymidine kinase; NESG, 96.7 0.0038 1.3E-07 62.3 8.9 108 90-219 7-114 (191)
108 2orw_A Thymidine kinase; TMTK, 96.7 0.0026 8.7E-08 63.3 7.2 40 90-129 2-41 (184)
109 3te6_A Regulatory protein SIR3 96.6 0.014 4.8E-07 63.0 13.0 124 89-227 43-177 (318)
110 2kjq_A DNAA-related protein; s 96.3 0.0037 1.3E-07 59.8 5.2 37 90-126 35-71 (149)
111 2zpa_A Uncharacterized protein 96.1 0.016 5.3E-07 68.5 10.4 115 76-226 175-291 (671)
112 1uaa_A REP helicase, protein ( 96.1 0.013 4.5E-07 70.8 10.2 86 76-173 2-91 (673)
113 2v1u_A Cell division control p 95.9 0.013 4.5E-07 65.2 8.3 37 90-126 43-85 (387)
114 3u4q_A ATP-dependent helicase/ 95.9 0.0091 3.1E-07 77.1 7.8 99 73-173 7-116 (1232)
115 2j9r_A Thymidine kinase; TK1, 95.9 0.012 4.1E-07 59.3 7.0 40 91-130 28-67 (214)
116 1pjr_A PCRA; DNA repair, DNA r 95.9 0.017 5.9E-07 70.2 9.8 104 76-192 11-120 (724)
117 1l8q_A Chromosomal replication 95.8 0.026 9E-07 61.3 9.9 76 91-196 37-112 (324)
118 1w4r_A Thymidine kinase; type 95.8 0.011 3.7E-07 58.7 5.9 39 90-128 19-57 (195)
119 2qgz_A Helicase loader, putati 95.6 0.027 9.4E-07 60.8 8.9 36 91-126 152-188 (308)
120 2w58_A DNAI, primosome compone 95.5 0.059 2E-06 53.9 10.5 35 92-126 55-89 (202)
121 2qby_B CDC6 homolog 3, cell di 95.5 0.029 1E-06 62.4 9.0 36 91-126 45-88 (384)
122 3bos_A Putative DNA replicatio 95.4 0.019 6.6E-07 59.0 6.8 38 90-127 51-88 (242)
123 1a5t_A Delta prime, HOLB; zinc 95.4 0.061 2.1E-06 58.7 11.0 132 77-222 3-147 (334)
124 2orv_A Thymidine kinase; TP4A 95.2 0.032 1.1E-06 56.7 7.3 41 90-130 18-58 (234)
125 2p65_A Hypothetical protein PF 95.1 0.05 1.7E-06 53.2 8.5 22 91-112 43-64 (187)
126 1jbk_A CLPB protein; beta barr 95.0 0.27 9.4E-06 47.9 13.6 21 91-111 43-63 (195)
127 1fnn_A CDC6P, cell division co 95.0 0.12 4.3E-06 57.2 12.3 114 93-223 46-169 (389)
128 2z4s_A Chromosomal replication 95.0 0.071 2.4E-06 60.6 10.3 78 91-197 130-209 (440)
129 3kl4_A SRP54, signal recogniti 95.0 0.29 9.9E-06 55.0 15.1 131 92-234 98-235 (433)
130 2r2a_A Uncharacterized protein 94.9 0.047 1.6E-06 54.7 7.5 39 93-131 7-50 (199)
131 3n70_A Transport activator; si 94.8 0.013 4.6E-07 55.4 3.1 22 89-110 22-43 (145)
132 3e2i_A Thymidine kinase; Zn-bi 94.7 0.043 1.5E-06 55.2 6.6 42 89-130 26-67 (219)
133 1g5t_A COB(I)alamin adenosyltr 94.5 0.12 4.1E-06 51.2 9.1 128 90-224 27-164 (196)
134 1d2n_A N-ethylmaleimide-sensit 94.3 0.15 5.1E-06 53.7 10.1 19 92-110 65-83 (272)
135 2chg_A Replication factor C sm 94.2 0.32 1.1E-05 48.7 12.1 20 92-111 39-58 (226)
136 3co5_A Putative two-component 94.2 0.037 1.3E-06 52.2 4.5 23 87-109 23-45 (143)
137 2qby_A CDC6 homolog 1, cell di 94.1 0.074 2.5E-06 58.9 7.7 36 91-126 45-83 (386)
138 2bjv_A PSP operon transcriptio 94.1 0.12 4E-06 54.3 8.7 23 89-111 27-49 (265)
139 1sxj_A Activator 1 95 kDa subu 93.9 0.19 6.5E-06 58.4 10.7 34 92-128 78-111 (516)
140 2px0_A Flagellar biosynthesis 93.7 0.61 2.1E-05 49.7 13.5 125 91-235 105-235 (296)
141 3syl_A Protein CBBX; photosynt 93.5 0.11 3.7E-06 55.9 7.3 19 92-110 68-86 (309)
142 2q6t_A DNAB replication FORK h 93.3 0.18 6.3E-06 57.3 9.2 107 89-197 198-325 (444)
143 3u61_B DNA polymerase accessor 93.0 0.12 4E-06 56.1 6.6 41 180-220 103-143 (324)
144 2w0m_A SSO2452; RECA, SSPF, un 93.0 0.26 8.8E-06 50.1 8.9 51 89-140 21-71 (235)
145 1iqp_A RFCS; clamp loader, ext 92.9 0.38 1.3E-05 51.7 10.6 18 93-110 48-65 (327)
146 3bh0_A DNAB-like replicative h 92.9 0.39 1.3E-05 51.8 10.4 107 88-196 65-195 (315)
147 1ojl_A Transcriptional regulat 92.8 0.17 5.9E-06 54.3 7.4 23 89-111 23-45 (304)
148 1njg_A DNA polymerase III subu 92.7 0.71 2.4E-05 46.7 11.8 33 79-111 29-65 (250)
149 4a1f_A DNAB helicase, replicat 92.6 0.071 2.4E-06 58.0 4.1 107 89-196 44-170 (338)
150 2cvh_A DNA repair and recombin 92.6 0.21 7.3E-06 50.3 7.5 38 89-129 18-55 (220)
151 2r6a_A DNAB helicase, replicat 92.5 0.26 8.9E-06 56.2 8.9 107 89-197 201-328 (454)
152 1w5s_A Origin recognition comp 92.3 0.22 7.6E-06 55.6 7.9 36 91-126 50-93 (412)
153 1u94_A RECA protein, recombina 92.3 0.25 8.7E-06 54.1 8.1 90 90-195 62-154 (356)
154 3dm5_A SRP54, signal recogniti 92.2 0.8 2.7E-05 51.5 12.0 119 92-224 101-225 (443)
155 2gno_A DNA polymerase III, gam 92.1 0.51 1.8E-05 50.5 10.1 37 180-220 80-119 (305)
156 3pfi_A Holliday junction ATP-d 92.0 0.4 1.4E-05 52.1 9.3 20 92-111 56-75 (338)
157 3h4m_A Proteasome-activating n 91.9 0.28 9.7E-06 51.8 7.7 21 90-110 50-70 (285)
158 1sxj_E Activator 1 40 kDa subu 91.8 0.31 1.1E-05 53.3 8.3 44 180-224 132-175 (354)
159 3bgw_A DNAB-like replicative h 91.8 0.32 1.1E-05 55.1 8.4 106 89-196 195-324 (444)
160 2qz4_A Paraplegin; AAA+, SPG7, 91.8 0.82 2.8E-05 47.3 11.1 20 91-110 39-58 (262)
161 3eie_A Vacuolar protein sortin 91.8 0.48 1.6E-05 51.2 9.5 33 91-126 51-83 (322)
162 1sxj_D Activator 1 41 kDa subu 91.4 0.52 1.8E-05 51.4 9.4 24 87-110 52-77 (353)
163 1sxj_C Activator 1 40 kDa subu 91.4 0.23 8E-06 54.1 6.5 23 88-110 41-65 (340)
164 2zr9_A Protein RECA, recombina 91.2 0.33 1.1E-05 53.1 7.5 42 90-131 60-101 (349)
165 1xp8_A RECA protein, recombina 91.2 0.33 1.1E-05 53.4 7.5 89 90-195 73-165 (366)
166 3vfd_A Spastin; ATPase, microt 91.0 0.49 1.7E-05 52.7 8.8 34 91-127 148-181 (389)
167 3uk6_A RUVB-like 2; hexameric 90.9 0.71 2.4E-05 50.7 10.1 26 92-118 71-96 (368)
168 1n0w_A DNA repair protein RAD5 90.9 0.5 1.7E-05 48.3 8.2 41 89-129 22-68 (243)
169 3hgt_A HDA1 complex subunit 3; 90.2 1 3.5E-05 48.1 9.9 115 318-485 115-237 (328)
170 1nlf_A Regulatory protein REPA 90.2 1.3 4.6E-05 46.5 10.9 42 88-130 27-79 (279)
171 3hr8_A Protein RECA; alpha and 90.1 0.45 1.5E-05 52.0 7.2 45 90-134 60-104 (356)
172 3pvs_A Replication-associated 89.9 0.31 1.1E-05 55.3 6.0 19 92-110 51-69 (447)
173 3b9p_A CG5977-PA, isoform A; A 89.7 0.54 1.8E-05 49.9 7.4 20 91-110 54-73 (297)
174 1xwi_A SKD1 protein; VPS4B, AA 89.6 1 3.6E-05 48.5 9.6 18 92-109 46-63 (322)
175 1sxj_B Activator 1 37 kDa subu 89.6 0.84 2.9E-05 48.8 9.0 19 93-111 44-62 (323)
176 2qp9_X Vacuolar protein sortin 89.4 1.4 4.7E-05 48.3 10.6 32 91-125 84-115 (355)
177 1hqc_A RUVB; extended AAA-ATPa 88.8 0.66 2.2E-05 49.9 7.3 21 91-111 38-58 (324)
178 1jr3_A DNA polymerase III subu 88.7 1 3.6E-05 49.3 9.1 23 93-116 40-62 (373)
179 3cmu_A Protein RECA, recombina 88.5 0.63 2.1E-05 61.6 8.0 95 85-195 1415-1518(2050)
180 2dr3_A UPF0273 protein PH0284; 88.2 0.47 1.6E-05 48.7 5.5 51 89-140 21-71 (247)
181 2i3b_A HCR-ntpase, human cance 87.7 0.88 3E-05 44.9 6.8 44 180-224 103-146 (189)
182 2zj8_A DNA helicase, putative 87.2 2.7 9.3E-05 50.7 12.2 175 760-947 453-641 (720)
183 2p6r_A Afuhel308 helicase; pro 87.1 2.5 8.5E-05 50.9 11.8 155 760-930 452-614 (702)
184 2fna_A Conserved hypothetical 87.1 7.9 0.00027 41.6 15.0 45 78-126 18-62 (357)
185 1q57_A DNA primase/helicase; d 86.5 0.95 3.2E-05 52.2 7.3 50 89-139 240-290 (503)
186 2chq_A Replication factor C sm 86.0 3.4 0.00012 43.8 11.1 19 93-111 40-58 (319)
187 3hjh_A Transcription-repair-co 85.9 2.5 8.6E-05 48.1 10.2 53 90-145 13-65 (483)
188 1e9r_A Conjugal transfer prote 85.7 0.74 2.5E-05 52.0 5.8 44 90-133 52-95 (437)
189 1ls1_A Signal recognition part 85.0 3.3 0.00011 44.0 10.0 93 90-194 97-192 (295)
190 3cmw_A Protein RECA, recombina 84.7 1.6 5.3E-05 57.2 8.5 86 91-196 1431-1523(1706)
191 2zan_A Vacuolar protein sortin 84.2 1.4 4.8E-05 49.9 7.1 35 91-127 167-201 (444)
192 3hu3_A Transitional endoplasmi 83.9 1.4 5E-05 50.3 7.1 33 91-126 238-270 (489)
193 3i4u_A ATP-dependent RNA helic 83.8 8.5 0.00029 40.1 12.3 136 761-926 18-154 (270)
194 2ce7_A Cell division protein F 83.6 1 3.5E-05 51.2 5.6 19 92-110 50-68 (476)
195 3cmw_A Protein RECA, recombina 83.4 1.4 4.9E-05 57.5 7.4 94 90-196 33-126 (1706)
196 3m6a_A ATP-dependent protease 83.3 1.5 5.3E-05 50.9 7.1 21 90-110 107-127 (543)
197 4ag6_A VIRB4 ATPase, type IV s 81.5 1.4 4.8E-05 48.9 5.7 42 90-131 34-75 (392)
198 3io5_A Recombination and repai 81.5 1.2 4.1E-05 47.5 4.7 88 93-195 30-124 (333)
199 2zts_A Putative uncharacterize 81.3 1.4 4.6E-05 45.2 5.1 52 90-142 29-81 (251)
200 2oap_1 GSPE-2, type II secreti 80.5 1.4 4.9E-05 50.7 5.3 48 77-125 245-293 (511)
201 1qvr_A CLPB protein; coiled co 79.9 2.5 8.4E-05 52.2 7.5 23 91-113 191-213 (854)
202 1p9r_A General secretion pathw 78.5 2.2 7.5E-05 47.7 5.9 48 77-125 151-201 (418)
203 2z43_A DNA repair and recombin 78.3 2.1 7.3E-05 46.1 5.6 42 90-131 106-153 (324)
204 4dyq_A Gene 1 protein; GP1, oc 78.2 3.5 0.00012 38.3 6.3 65 875-940 13-79 (140)
205 2ffh_A Protein (FFH); SRP54, s 78.0 12 0.0004 41.8 11.6 120 91-224 98-223 (425)
206 2l8b_A Protein TRAI, DNA helic 77.7 2.4 8.2E-05 41.1 5.0 58 77-134 35-95 (189)
207 2eyu_A Twitching motility prot 77.0 1.8 6.3E-05 45.0 4.4 23 88-110 22-44 (261)
208 1r6b_X CLPA protein; AAA+, N-t 76.9 4.5 0.00015 49.1 8.6 22 90-111 206-227 (758)
209 2ehv_A Hypothetical protein PH 75.6 2.6 8.9E-05 43.0 5.2 41 88-128 27-68 (251)
210 1gm5_A RECG; helicase, replica 75.2 4.6 0.00016 49.0 7.8 79 329-442 417-496 (780)
211 1v5w_A DMC1, meiotic recombina 74.1 2.8 9.7E-05 45.5 5.2 42 90-131 121-168 (343)
212 1cr0_A DNA primase/helicase; R 73.2 3.5 0.00012 43.6 5.5 40 88-127 32-72 (296)
213 2r8r_A Sensor protein; KDPD, P 72.9 3.6 0.00012 41.6 5.2 129 93-238 8-141 (228)
214 1ny5_A Transcriptional regulat 72.2 8.2 0.00028 42.6 8.5 86 89-195 158-244 (387)
215 1vma_A Cell division protein F 72.0 6.3 0.00022 41.9 7.2 91 91-193 104-197 (306)
216 2ewv_A Twitching motility prot 71.5 3.2 0.00011 45.7 4.8 37 88-125 133-171 (372)
217 3b85_A Phosphate starvation-in 71.0 3.9 0.00013 40.9 4.9 33 78-110 9-41 (208)
218 2jgn_A DBX, DDX3, ATP-dependen 70.6 12 0.00041 36.3 8.4 81 101-188 29-120 (185)
219 3jvv_A Twitching mobility prot 70.3 3.8 0.00013 44.7 5.0 36 89-125 121-158 (356)
220 2yvu_A Probable adenylyl-sulfa 69.8 4.5 0.00015 39.3 5.0 36 90-125 12-47 (186)
221 1kgd_A CASK, peripheral plasma 69.7 2.8 9.5E-05 40.7 3.5 21 90-110 4-24 (180)
222 3vaa_A Shikimate kinase, SK; s 69.7 2.2 7.5E-05 42.1 2.8 23 89-111 23-45 (199)
223 4fcw_A Chaperone protein CLPB; 69.3 4.1 0.00014 43.2 5.0 34 92-125 48-81 (311)
224 3oiy_A Reverse gyrase helicase 69.1 13 0.00045 41.0 9.4 79 327-441 62-144 (414)
225 3u4q_B ATP-dependent helicase/ 68.8 8 0.00027 49.5 8.4 69 94-173 4-75 (1166)
226 1fuk_A Eukaryotic initiation f 68.4 23 0.00078 33.4 9.7 65 118-188 29-104 (165)
227 3tau_A Guanylate kinase, GMP k 67.9 3.1 0.00011 41.4 3.5 22 89-110 6-27 (208)
228 2gza_A Type IV secretion syste 67.8 3.3 0.00011 45.4 3.9 21 88-108 172-192 (361)
229 2hjv_A ATP-dependent RNA helic 67.3 37 0.0013 31.7 11.0 65 118-188 34-109 (163)
230 1qhx_A CPT, protein (chloramph 67.3 2.6 8.9E-05 40.5 2.7 20 91-110 3-22 (178)
231 3trf_A Shikimate kinase, SK; a 66.9 2.7 9.2E-05 40.7 2.7 21 91-111 5-25 (185)
232 3a8t_A Adenylate isopentenyltr 66.6 2.8 9.7E-05 45.1 3.0 18 91-108 40-57 (339)
233 2xau_A PRE-mRNA-splicing facto 66.3 33 0.0011 41.5 12.7 61 761-822 489-550 (773)
234 1c9k_A COBU, adenosylcobinamid 66.2 3.4 0.00012 40.2 3.2 38 94-135 2-39 (180)
235 3fkq_A NTRC-like two-domain pr 66.1 8.7 0.0003 42.1 6.9 31 96-126 149-179 (373)
236 4a74_A DNA repair and recombin 66.1 5.7 0.0002 39.7 5.1 42 89-130 23-70 (231)
237 1lvg_A Guanylate kinase, GMP k 66.0 3.4 0.00012 40.8 3.3 21 90-110 3-23 (198)
238 1xjc_A MOBB protein homolog; s 65.8 6.7 0.00023 37.7 5.2 34 93-126 6-39 (169)
239 3exa_A TRNA delta(2)-isopenten 65.8 2.7 9.3E-05 44.7 2.6 17 92-108 4-20 (322)
240 1zu4_A FTSY; GTPase, signal re 65.6 5.5 0.00019 42.7 5.0 94 91-194 105-203 (320)
241 1rj9_A FTSY, signal recognitio 65.5 6.2 0.00021 42.0 5.4 36 90-125 101-136 (304)
242 3foz_A TRNA delta(2)-isopenten 65.2 2.8 9.7E-05 44.5 2.6 16 93-108 12-27 (316)
243 3nbx_X ATPase RAVA; AAA+ ATPas 65.1 3.6 0.00012 47.1 3.7 29 82-110 32-60 (500)
244 2pt7_A CAG-ALFA; ATPase, prote 64.8 3.1 0.00011 44.9 2.9 21 88-108 168-188 (330)
245 3uie_A Adenylyl-sulfate kinase 64.7 6.4 0.00022 38.7 5.0 34 77-111 12-45 (200)
246 3lw7_A Adenylate kinase relate 64.6 2.9 0.0001 39.7 2.4 19 93-111 3-21 (179)
247 1ofh_A ATP-dependent HSL prote 64.5 6.3 0.00021 41.6 5.3 20 91-110 50-69 (310)
248 2r44_A Uncharacterized protein 64.4 3.2 0.00011 44.6 3.0 25 86-110 41-65 (331)
249 2qmh_A HPR kinase/phosphorylas 64.2 3.5 0.00012 40.8 2.8 19 90-108 33-51 (205)
250 4b4t_K 26S protease regulatory 64.2 13 0.00045 41.4 7.9 19 91-109 206-224 (428)
251 1zp6_A Hypothetical protein AT 63.8 2.8 9.7E-05 40.8 2.2 23 88-110 6-28 (191)
252 3hws_A ATP-dependent CLP prote 63.7 5.5 0.00019 43.5 4.7 21 90-110 50-70 (363)
253 3lda_A DNA repair protein RAD5 63.3 7.2 0.00025 43.2 5.5 52 90-141 177-234 (400)
254 3tr0_A Guanylate kinase, GMP k 63.2 4.1 0.00014 40.1 3.3 22 89-110 5-26 (205)
255 3b9q_A Chloroplast SRP recepto 63.1 6.6 0.00023 41.7 5.0 40 90-129 99-139 (302)
256 4b4t_M 26S protease regulatory 63.1 6.5 0.00022 44.0 5.1 19 91-109 215-233 (434)
257 2ze6_A Isopentenyl transferase 63.0 3.1 0.00011 43.0 2.4 17 93-109 3-19 (253)
258 2j41_A Guanylate kinase; GMP, 63.0 4.2 0.00014 40.0 3.3 22 89-110 4-25 (207)
259 4b4t_J 26S protease regulatory 62.8 6.9 0.00023 43.2 5.2 34 91-127 182-215 (405)
260 3t15_A Ribulose bisphosphate c 62.8 5.6 0.00019 42.0 4.4 32 92-126 37-68 (293)
261 3ney_A 55 kDa erythrocyte memb 62.7 4.6 0.00016 39.9 3.5 21 89-109 17-37 (197)
262 1lv7_A FTSH; alpha/beta domain 62.7 7.6 0.00026 39.8 5.4 20 91-110 45-64 (257)
263 2i1q_A DNA repair and recombin 62.5 6.3 0.00022 42.2 4.8 51 90-140 97-164 (322)
264 3cmu_A Protein RECA, recombina 62.5 6.1 0.00021 52.5 5.4 47 89-136 1079-1125(2050)
265 2c9o_A RUVB-like 1; hexameric 62.4 6.2 0.00021 44.6 5.0 33 91-124 63-95 (456)
266 1kag_A SKI, shikimate kinase I 62.1 4 0.00014 38.9 2.9 20 91-110 4-23 (173)
267 3bs4_A Uncharacterized protein 62.1 6.2 0.00021 40.8 4.4 52 90-142 20-71 (260)
268 2eyq_A TRCF, transcription-rep 61.8 23 0.00079 45.0 10.5 80 328-442 651-731 (1151)
269 2rb4_A ATP-dependent RNA helic 61.8 14 0.00049 35.2 6.8 65 118-188 33-108 (175)
270 4b4t_L 26S protease subunit RP 61.7 7.1 0.00024 43.7 5.1 20 91-110 215-234 (437)
271 2qor_A Guanylate kinase; phosp 61.7 5.5 0.00019 39.4 3.9 23 88-110 9-31 (204)
272 3eaq_A Heat resistant RNA depe 61.5 51 0.0018 32.5 11.2 66 117-188 29-105 (212)
273 1y63_A LMAJ004144AAA protein; 61.4 4.4 0.00015 39.3 3.1 22 90-111 9-30 (184)
274 3cf0_A Transitional endoplasmi 61.4 6.8 0.00023 41.5 4.8 21 90-110 48-68 (301)
275 1rz3_A Hypothetical protein rb 61.3 7.8 0.00027 38.2 4.9 35 91-125 22-56 (201)
276 2xxa_A Signal recognition part 61.3 13 0.00043 41.7 7.1 91 92-194 101-195 (433)
277 3iij_A Coilin-interacting nucl 61.1 4.3 0.00015 39.1 2.9 21 90-110 10-30 (180)
278 2vhj_A Ntpase P4, P4; non- hyd 60.9 2.5 8.4E-05 45.3 1.1 36 89-127 121-156 (331)
279 1tue_A Replication protein E1; 60.4 6.1 0.00021 39.3 3.8 41 74-116 38-82 (212)
280 1nks_A Adenylate kinase; therm 60.1 8.8 0.0003 37.0 5.1 32 93-125 3-35 (194)
281 1tf7_A KAIC; homohexamer, hexa 59.9 8.2 0.00028 44.5 5.5 42 88-129 278-319 (525)
282 1m7g_A Adenylylsulfate kinase; 59.7 9.5 0.00032 37.8 5.3 48 77-126 12-61 (211)
283 1z6g_A Guanylate kinase; struc 59.5 5.7 0.00019 39.9 3.6 23 88-110 20-42 (218)
284 3a00_A Guanylate kinase, GMP k 59.4 5.6 0.00019 38.7 3.4 20 91-110 1-20 (186)
285 2pez_A Bifunctional 3'-phospho 59.2 9.4 0.00032 36.6 5.0 21 90-110 4-24 (179)
286 3e70_C DPA, signal recognition 58.9 8.5 0.00029 41.4 5.0 124 90-224 128-254 (328)
287 3kb2_A SPBC2 prophage-derived 58.8 4.2 0.00014 38.6 2.4 19 93-111 3-21 (173)
288 4ddu_A Reverse gyrase; topoiso 58.8 20 0.00069 45.3 9.1 79 327-441 119-201 (1104)
289 1ex7_A Guanylate kinase; subst 58.4 6.9 0.00023 38.3 3.8 17 92-108 2-18 (186)
290 2z0h_A DTMP kinase, thymidylat 58.4 10 0.00036 36.7 5.3 32 94-125 3-34 (197)
291 1kht_A Adenylate kinase; phosp 58.3 4.7 0.00016 39.0 2.7 21 91-111 3-23 (192)
292 1ly1_A Polynucleotide kinase; 58.3 4.4 0.00015 38.8 2.4 18 93-110 4-21 (181)
293 2v3c_C SRP54, signal recogniti 58.3 6.2 0.00021 44.2 3.9 91 92-195 100-193 (432)
294 2og2_A Putative signal recogni 58.1 8.8 0.0003 41.8 5.0 38 91-128 157-195 (359)
295 3a4m_A L-seryl-tRNA(SEC) kinas 58.0 9.7 0.00033 39.3 5.2 35 91-125 4-38 (260)
296 3crm_A TRNA delta(2)-isopenten 58.0 5.8 0.0002 42.5 3.4 17 93-109 7-23 (323)
297 2v9p_A Replication protein E1; 57.9 5.7 0.00019 42.2 3.3 36 89-127 124-159 (305)
298 3d3q_A TRNA delta(2)-isopenten 57.8 5.9 0.0002 42.7 3.5 17 93-109 9-25 (340)
299 1znw_A Guanylate kinase, GMP k 57.7 5 0.00017 39.8 2.8 23 87-109 16-38 (207)
300 4eun_A Thermoresistant glucoki 57.7 5 0.00017 39.5 2.8 23 89-111 27-49 (200)
301 4gp7_A Metallophosphoesterase; 57.7 4.3 0.00015 38.9 2.2 22 89-110 7-28 (171)
302 4akg_A Glutathione S-transfera 57.6 12 0.00043 51.3 7.3 67 68-134 896-968 (2695)
303 3d8b_A Fidgetin-like protein 1 57.5 8.7 0.0003 41.8 4.9 34 91-127 117-150 (357)
304 3cm0_A Adenylate kinase; ATP-b 57.5 3.7 0.00013 39.7 1.7 22 90-111 3-24 (186)
305 1knq_A Gluconate kinase; ALFA/ 57.3 4.4 0.00015 38.8 2.2 21 90-110 7-27 (175)
306 2p6n_A ATP-dependent RNA helic 57.1 26 0.00088 34.1 7.9 65 118-188 53-128 (191)
307 1j8m_F SRP54, signal recogniti 56.9 7.9 0.00027 41.0 4.3 93 91-195 98-193 (297)
308 1s96_A Guanylate kinase, GMP k 56.2 6.8 0.00023 39.4 3.5 23 88-110 13-35 (219)
309 3eph_A TRNA isopentenyltransfe 55.5 6.8 0.00023 43.2 3.5 17 93-109 4-20 (409)
310 1p4x_A Staphylococcal accessor 55.3 39 0.0013 34.5 9.1 122 762-915 66-200 (250)
311 1pzn_A RAD51, DNA repair and r 55.0 7.7 0.00026 42.1 3.9 40 90-129 130-175 (349)
312 3idw_A Actin cytoskeleton-regu 54.7 7.8 0.00027 31.0 2.7 25 894-918 42-66 (72)
313 2c95_A Adenylate kinase 1; tra 54.5 6.2 0.00021 38.4 2.8 24 88-111 6-29 (196)
314 4b4t_H 26S protease regulatory 54.4 9.5 0.00032 42.8 4.5 19 91-109 243-261 (467)
315 1um8_A ATP-dependent CLP prote 54.1 5.9 0.0002 43.4 2.9 20 91-110 72-91 (376)
316 4b4t_I 26S protease regulatory 53.7 12 0.00041 41.5 5.2 19 91-109 216-234 (437)
317 2ius_A DNA translocase FTSK; n 53.5 14 0.00046 42.3 5.7 41 89-129 165-208 (512)
318 2o8x_A Probable RNA polymerase 53.3 16 0.00056 28.5 4.7 50 875-924 16-66 (70)
319 2rhm_A Putative kinase; P-loop 53.2 5.6 0.00019 38.6 2.2 21 91-111 5-25 (193)
320 3c8u_A Fructokinase; YP_612366 52.7 13 0.00045 36.7 4.9 20 90-109 21-40 (208)
321 2pbr_A DTMP kinase, thymidylat 52.6 15 0.0005 35.5 5.2 33 93-125 2-34 (195)
322 1np6_A Molybdopterin-guanine d 52.5 15 0.00052 35.3 5.2 19 92-110 7-25 (174)
323 1nn5_A Similar to deoxythymidy 52.3 16 0.00054 35.9 5.5 35 90-124 8-42 (215)
324 2bdt_A BH3686; alpha-beta prot 52.0 5.1 0.00017 38.9 1.7 20 92-111 3-22 (189)
325 1gvn_B Zeta; postsegregational 51.9 5.7 0.0002 41.8 2.2 19 92-110 34-52 (287)
326 2yhs_A FTSY, cell division pro 51.5 13 0.00043 42.2 5.0 38 91-128 293-331 (503)
327 2bwj_A Adenylate kinase 5; pho 51.4 7.2 0.00025 38.0 2.7 24 88-111 9-32 (199)
328 3t61_A Gluconokinase; PSI-biol 51.4 6.6 0.00023 38.6 2.4 19 92-110 19-37 (202)
329 1zuh_A Shikimate kinase; alpha 51.3 7.8 0.00027 36.7 2.9 20 92-111 8-27 (168)
330 1tc3_C Protein (TC3 transposas 51.1 12 0.00041 26.7 3.3 34 880-913 12-45 (51)
331 2iyv_A Shikimate kinase, SK; t 50.9 7.7 0.00026 37.4 2.8 20 92-111 3-22 (184)
332 3pxi_A Negative regulator of g 50.9 18 0.00061 43.8 6.6 33 93-125 523-555 (758)
333 1zd8_A GTP:AMP phosphotransfer 50.7 7.2 0.00025 39.2 2.6 21 90-110 6-26 (227)
334 1byi_A Dethiobiotin synthase; 50.6 16 0.00056 36.2 5.3 33 95-127 6-38 (224)
335 1via_A Shikimate kinase; struc 50.1 7.7 0.00026 37.1 2.6 19 93-111 6-24 (175)
336 1w36_B RECB, exodeoxyribonucle 50.0 21 0.00073 45.5 7.4 52 93-144 18-81 (1180)
337 2plr_A DTMP kinase, probable t 49.9 21 0.00072 34.8 6.0 22 90-111 3-24 (213)
338 2j37_W Signal recognition part 49.8 14 0.00048 42.2 5.1 118 93-224 103-226 (504)
339 1ixz_A ATP-dependent metallopr 49.8 7.5 0.00026 39.8 2.6 19 92-110 50-68 (254)
340 3asz_A Uridine kinase; cytidin 49.8 6.8 0.00023 38.8 2.2 21 90-110 5-25 (211)
341 3lnc_A Guanylate kinase, GMP k 49.6 6.9 0.00024 39.5 2.3 22 89-110 25-46 (231)
342 1c4o_A DNA nucleotide excision 49.5 58 0.002 38.6 10.6 77 112-194 432-519 (664)
343 1tev_A UMP-CMP kinase; ploop, 49.4 6.9 0.00023 37.9 2.2 20 91-110 3-22 (196)
344 2wwf_A Thymidilate kinase, put 49.1 19 0.00064 35.3 5.5 23 90-112 9-31 (212)
345 1aky_A Adenylate kinase; ATP:A 48.8 8.4 0.00029 38.4 2.8 22 90-111 3-24 (220)
346 3fb4_A Adenylate kinase; psych 48.7 11 0.00038 37.3 3.6 19 93-111 2-20 (216)
347 2d7d_A Uvrabc system protein B 48.7 51 0.0017 39.0 10.0 77 112-194 438-525 (661)
348 2i4i_A ATP-dependent RNA helic 48.5 35 0.0012 37.3 8.1 72 111-188 268-350 (417)
349 2cdn_A Adenylate kinase; phosp 48.4 8.7 0.0003 37.7 2.8 21 91-111 20-40 (201)
350 1z6t_A APAF-1, apoptotic prote 48.3 35 0.0012 39.6 8.5 37 75-111 126-167 (591)
351 3k1j_A LON protease, ATP-depen 48.0 9.7 0.00033 44.8 3.5 25 86-110 55-79 (604)
352 3zq6_A Putative arsenical pump 48.0 17 0.00057 38.9 5.1 35 93-127 16-50 (324)
353 1e6c_A Shikimate kinase; phosp 47.9 8.7 0.0003 36.4 2.6 20 92-111 3-22 (173)
354 3dl0_A Adenylate kinase; phosp 47.8 8.9 0.0003 38.1 2.7 19 93-111 2-20 (216)
355 2qt1_A Nicotinamide riboside k 47.8 8.5 0.00029 38.0 2.6 22 89-110 19-40 (207)
356 2r62_A Cell division protease 47.7 6.4 0.00022 40.6 1.7 20 91-110 44-63 (268)
357 2woo_A ATPase GET3; tail-ancho 47.5 17 0.00057 39.0 5.0 34 93-126 21-54 (329)
358 2v54_A DTMP kinase, thymidylat 47.4 10 0.00035 37.1 3.1 22 90-111 3-24 (204)
359 2elh_A CG11849-PA, LD40883P; s 47.4 2.6 9E-05 35.5 -1.1 49 875-923 23-72 (87)
360 3qf7_A RAD50; ABC-ATPase, ATPa 47.3 12 0.00041 40.8 3.9 18 93-110 25-42 (365)
361 3nwj_A ATSK2; P loop, shikimat 47.3 12 0.00041 38.5 3.6 22 90-111 47-68 (250)
362 1nij_A Hypothetical protein YJ 47.3 12 0.00042 39.9 3.9 34 93-128 6-39 (318)
363 1bg2_A Kinesin; motor protein, 47.2 9.5 0.00033 40.9 3.0 21 88-108 73-95 (325)
364 3i32_A Heat resistant RNA depe 47.2 43 0.0015 35.3 8.1 80 101-188 12-102 (300)
365 1u0j_A DNA replication protein 46.8 17 0.0006 37.5 4.8 33 77-109 84-122 (267)
366 1zak_A Adenylate kinase; ATP:A 46.6 13 0.00045 37.0 3.8 22 90-111 4-25 (222)
367 1cke_A CK, MSSA, protein (cyti 46.6 10 0.00035 37.9 3.0 21 91-111 5-25 (227)
368 2y65_A Kinesin, kinesin heavy 46.4 9.9 0.00034 41.4 3.0 32 77-108 61-102 (365)
369 1tf7_A KAIC; homohexamer, hexa 45.7 17 0.00059 41.8 5.1 39 89-127 37-76 (525)
370 3pxg_A Negative regulator of g 45.7 16 0.00054 41.4 4.7 21 90-110 200-220 (468)
371 1qf9_A UMP/CMP kinase, protein 45.6 10 0.00035 36.6 2.7 19 93-111 8-26 (194)
372 1g8p_A Magnesium-chelatase 38 45.5 5.9 0.0002 42.7 1.0 21 90-110 44-64 (350)
373 1ihu_A Arsenical pump-driving 45.4 19 0.00065 42.1 5.5 36 91-126 8-43 (589)
374 1gtv_A TMK, thymidylate kinase 45.4 8 0.00027 38.2 2.0 18 94-111 3-20 (214)
375 3t0q_A AGR253WP; kinesin, alph 45.1 11 0.00039 40.7 3.2 21 88-108 81-103 (349)
376 1ak2_A Adenylate kinase isoenz 45.0 14 0.00049 37.2 3.8 23 89-111 14-36 (233)
377 1qvr_A CLPB protein; coiled co 45.0 14 0.00049 45.3 4.5 34 92-125 589-622 (854)
378 2pt5_A Shikimate kinase, SK; a 44.8 11 0.00039 35.4 2.9 19 93-111 2-20 (168)
379 4etp_A Kinesin-like protein KA 44.8 12 0.0004 41.5 3.3 23 86-108 134-158 (403)
380 1hyq_A MIND, cell division inh 44.6 21 0.00073 36.4 5.2 33 94-126 6-38 (263)
381 1f9v_A Kinesin-like protein KA 44.5 12 0.00041 40.5 3.3 20 89-108 81-102 (347)
382 3dc4_A Kinesin-like protein NO 44.3 10 0.00035 41.0 2.6 32 77-108 71-112 (344)
383 1g3q_A MIND ATPase, cell divis 44.3 19 0.00064 36.1 4.6 32 95-126 7-38 (237)
384 3ug7_A Arsenical pump-driving 44.3 20 0.00069 38.7 5.1 33 94-126 29-61 (349)
385 4edh_A DTMP kinase, thymidylat 44.3 22 0.00075 35.4 5.0 36 90-125 5-40 (213)
386 4a14_A Kinesin, kinesin-like p 44.2 11 0.00038 40.7 3.0 32 77-108 60-101 (344)
387 1iy2_A ATP-dependent metallopr 44.2 10 0.00036 39.4 2.7 19 92-110 74-92 (278)
388 3of5_A Dethiobiotin synthetase 44.1 24 0.00081 35.6 5.3 35 93-127 6-41 (228)
389 1oyw_A RECQ helicase, ATP-depe 44.0 32 0.0011 39.5 7.0 74 329-441 65-144 (523)
390 3p32_A Probable GTPase RV1496/ 43.8 21 0.0007 38.7 5.1 34 93-126 81-114 (355)
391 1in4_A RUVB, holliday junction 43.8 13 0.00043 40.1 3.3 19 92-110 52-70 (334)
392 4e22_A Cytidylate kinase; P-lo 43.8 11 0.00037 38.7 2.7 23 89-111 25-47 (252)
393 3fht_A ATP-dependent RNA helic 43.7 89 0.003 33.8 10.5 65 118-188 265-340 (412)
394 1ukz_A Uridylate kinase; trans 43.6 10 0.00035 37.1 2.4 19 92-110 16-34 (203)
395 1f2t_A RAD50 ABC-ATPase; DNA d 43.5 11 0.00039 35.1 2.6 17 93-109 25-41 (149)
396 1x88_A Kinesin-like protein KI 43.4 11 0.00038 40.9 2.8 21 88-108 84-106 (359)
397 2vli_A Antibiotic resistance p 43.4 7.9 0.00027 37.1 1.5 20 91-110 5-24 (183)
398 3tlx_A Adenylate kinase 2; str 43.3 11 0.00036 38.6 2.5 23 90-112 28-50 (243)
399 3ice_A Transcription terminati 43.3 44 0.0015 36.6 7.4 34 77-110 157-193 (422)
400 3be4_A Adenylate kinase; malar 42.9 13 0.00044 37.0 3.0 21 91-111 5-25 (217)
401 4dzz_A Plasmid partitioning pr 42.9 18 0.0006 35.3 4.0 114 95-236 6-121 (206)
402 3nwn_A Kinesin-like protein KI 42.8 16 0.00055 39.7 3.9 21 88-108 100-122 (359)
403 2if2_A Dephospho-COA kinase; a 42.7 11 0.00036 37.1 2.3 19 93-111 3-21 (204)
404 3umf_A Adenylate kinase; rossm 42.7 15 0.00051 36.8 3.4 23 89-111 27-49 (217)
405 2v1x_A ATP-dependent DNA helic 42.6 31 0.0011 40.3 6.7 59 329-426 84-144 (591)
406 2jaq_A Deoxyguanosine kinase; 42.3 11 0.00038 36.7 2.4 19 93-111 2-20 (205)
407 2x8a_A Nuclear valosin-contain 42.3 11 0.00037 39.3 2.4 18 92-109 45-62 (274)
408 3tif_A Uncharacterized ABC tra 42.3 12 0.00042 38.0 2.8 20 89-108 29-48 (235)
409 1uf9_A TT1252 protein; P-loop, 42.1 12 0.00042 36.4 2.7 19 93-111 10-28 (203)
410 2p5t_B PEZT; postsegregational 42.0 7.9 0.00027 39.8 1.3 19 92-110 33-51 (253)
411 2ph1_A Nucleotide-binding prot 42.0 21 0.00071 36.7 4.6 32 95-126 23-54 (262)
412 3sr0_A Adenylate kinase; phosp 41.9 17 0.00057 36.1 3.6 20 93-112 2-21 (206)
413 3bfn_A Kinesin-like protein KI 41.8 12 0.00042 41.0 2.8 32 77-108 75-116 (388)
414 2rep_A Kinesin-like protein KI 41.8 13 0.00043 40.7 3.0 32 77-108 93-133 (376)
415 3kta_A Chromosome segregation 41.8 13 0.00043 35.7 2.7 17 93-109 28-44 (182)
416 2bbw_A Adenylate kinase 4, AK4 41.5 13 0.00043 37.9 2.8 21 90-110 26-46 (246)
417 1t5i_A C_terminal domain of A 41.3 58 0.002 30.8 7.4 79 102-188 16-105 (172)
418 1jjv_A Dephospho-COA kinase; P 41.2 13 0.00045 36.5 2.8 19 93-111 4-22 (206)
419 1g41_A Heat shock protein HSLU 41.2 13 0.00043 41.7 2.9 19 91-109 50-68 (444)
420 1ry6_A Internal kinesin; kines 41.0 13 0.00045 40.3 2.9 19 90-108 82-102 (360)
421 1ye8_A Protein THEP1, hypothet 40.9 13 0.00043 36.0 2.5 17 93-109 2-18 (178)
422 1e4v_A Adenylate kinase; trans 40.9 18 0.0006 35.8 3.7 19 93-111 2-20 (214)
423 2iut_A DNA translocase FTSK; n 40.7 28 0.00097 40.1 5.7 27 91-117 214-240 (574)
424 2wbe_C Bipolar kinesin KRP-130 40.7 12 0.00042 40.8 2.7 32 77-108 77-118 (373)
425 3q9l_A Septum site-determining 40.4 23 0.00078 36.0 4.6 31 95-125 7-37 (260)
426 3tqc_A Pantothenate kinase; bi 40.2 41 0.0014 35.8 6.6 18 93-110 94-111 (321)
427 1sq5_A Pantothenate kinase; P- 40.0 22 0.00074 37.7 4.4 21 90-110 79-99 (308)
428 1yrb_A ATP(GTP)binding protein 40.0 23 0.00078 36.1 4.5 33 93-126 16-48 (262)
429 1htw_A HI0065; nucleotide-bind 39.8 19 0.00066 33.9 3.5 20 89-108 31-50 (158)
430 3f9v_A Minichromosome maintena 39.7 12 0.0004 43.9 2.4 17 93-109 329-345 (595)
431 2f1r_A Molybdopterin-guanine d 39.5 10 0.00036 36.4 1.6 20 93-112 4-23 (171)
432 4eaq_A DTMP kinase, thymidylat 39.4 23 0.00078 35.7 4.3 35 90-125 25-59 (229)
433 3auy_A DNA double-strand break 39.3 13 0.00044 40.7 2.5 21 93-114 27-47 (371)
434 2cbz_A Multidrug resistance-as 38.9 15 0.0005 37.4 2.8 20 89-108 29-48 (237)
435 3qxc_A Dethiobiotin synthetase 38.8 33 0.0011 34.9 5.3 36 92-127 22-58 (242)
436 2vvg_A Kinesin-2; motor protei 38.7 21 0.00071 38.6 4.0 32 77-108 66-107 (350)
437 1goj_A Kinesin, kinesin heavy 38.7 20 0.00069 38.8 3.9 32 77-108 57-98 (355)
438 2h58_A Kinesin-like protein KI 38.5 21 0.00072 38.2 4.0 25 84-108 72-98 (330)
439 2jeo_A Uridine-cytidine kinase 38.3 12 0.00042 38.0 2.1 22 89-110 23-44 (245)
440 3b6u_A Kinesin-like protein KI 38.2 21 0.00071 38.9 3.9 32 77-108 78-119 (372)
441 1t5c_A CENP-E protein, centrom 38.2 21 0.00072 38.6 3.9 21 88-108 73-95 (349)
442 2nr8_A Kinesin-like protein KI 38.0 21 0.00072 38.7 3.9 21 88-108 99-121 (358)
443 3pey_A ATP-dependent RNA helic 37.9 61 0.0021 34.8 7.9 68 118-191 242-320 (395)
444 3hug_A RNA polymerase sigma fa 37.8 50 0.0017 27.6 5.6 48 875-922 38-86 (92)
445 3lre_A Kinesin-like protein KI 37.8 21 0.00072 38.7 3.9 32 77-108 82-123 (355)
446 1xsv_A Hypothetical UPF0122 pr 37.7 1.2E+02 0.0042 26.4 8.4 67 875-944 26-93 (113)
447 3cwq_A Para family chromosome 37.5 32 0.0011 33.9 4.9 38 94-132 4-43 (209)
448 3vkg_A Dynein heavy chain, cyt 37.4 24 0.00083 49.2 5.1 65 69-134 880-951 (3245)
449 1odf_A YGR205W, hypothetical 3 37.3 14 0.00049 38.8 2.4 18 93-110 33-50 (290)
450 2grj_A Dephospho-COA kinase; T 37.2 17 0.00058 35.6 2.8 20 93-112 14-33 (192)
451 3lv8_A DTMP kinase, thymidylat 37.2 38 0.0013 34.3 5.5 39 90-128 26-66 (236)
452 3i5x_A ATP-dependent RNA helic 37.2 1.2E+02 0.0042 34.6 10.8 68 117-190 337-418 (563)
453 3pxi_A Negative regulator of g 37.2 24 0.00082 42.7 4.7 21 90-110 200-220 (758)
454 2xb4_A Adenylate kinase; ATP-b 37.2 21 0.00073 35.6 3.6 19 93-111 2-20 (223)
455 3gbj_A KIF13B protein; kinesin 37.1 22 0.00076 38.5 3.9 22 87-108 87-110 (354)
456 3v9p_A DTMP kinase, thymidylat 37.1 28 0.00094 35.1 4.4 38 88-125 22-63 (227)
457 3gfo_A Cobalt import ATP-bindi 37.0 16 0.00054 38.1 2.7 20 89-108 32-51 (275)
458 1v8k_A Kinesin-like protein KI 37.0 24 0.00082 38.9 4.2 32 77-108 131-172 (410)
459 4akg_A Glutathione S-transfera 36.8 18 0.00062 49.8 3.8 23 88-110 1264-1286(2695)
460 1vht_A Dephospho-COA kinase; s 36.7 15 0.00052 36.4 2.4 20 92-111 5-24 (218)
461 3iqw_A Tail-anchored protein t 36.7 27 0.00093 37.5 4.5 35 92-126 17-51 (334)
462 3kjh_A CO dehydrogenase/acetyl 36.7 21 0.00073 35.9 3.6 32 94-125 3-34 (254)
463 1sgw_A Putative ABC transporte 36.7 17 0.0006 36.2 2.8 20 89-108 33-52 (214)
464 2ff7_A Alpha-hemolysin translo 36.6 17 0.00057 37.2 2.8 20 89-108 33-52 (247)
465 4tmk_A Protein (thymidylate ki 36.5 40 0.0014 33.5 5.5 40 90-129 2-43 (213)
466 2zfi_A Kinesin-like protein KI 36.5 23 0.0008 38.5 4.0 21 88-108 85-107 (366)
467 2ghi_A Transport protein; mult 36.4 17 0.00058 37.5 2.8 20 89-108 44-63 (260)
468 1wp9_A ATP-dependent RNA helic 36.4 96 0.0033 34.2 9.5 83 100-188 340-443 (494)
469 2pze_A Cystic fibrosis transme 36.1 17 0.00059 36.6 2.7 20 89-108 32-51 (229)
470 2qm8_A GTPase/ATPase; G protei 36.0 32 0.0011 36.9 5.0 38 89-126 53-90 (337)
471 2oca_A DAR protein, ATP-depend 35.9 92 0.0031 35.2 9.3 72 116-192 344-426 (510)
472 2woj_A ATPase GET3; tail-ancho 35.8 31 0.0011 37.3 4.9 35 93-127 20-56 (354)
473 1jr3_D DNA polymerase III, del 35.8 1.1E+02 0.0039 32.3 9.5 71 166-238 61-132 (343)
474 2p67_A LAO/AO transport system 35.5 32 0.0011 37.0 4.9 37 90-126 55-91 (341)
475 1hv8_A Putative ATP-dependent 35.5 58 0.002 34.6 7.1 65 118-188 237-312 (367)
476 2heh_A KIF2C protein; kinesin, 35.5 24 0.00082 38.6 3.9 32 77-108 111-152 (387)
477 2pcj_A ABC transporter, lipopr 35.4 18 0.00061 36.4 2.7 20 89-108 28-47 (224)
478 3cio_A ETK, tyrosine-protein k 35.4 35 0.0012 35.9 5.1 34 92-125 105-139 (299)
479 3cob_A Kinesin heavy chain-lik 35.2 22 0.00074 38.7 3.5 24 85-108 72-97 (369)
480 4g1u_C Hemin import ATP-bindin 35.1 18 0.00062 37.5 2.7 20 89-108 35-54 (266)
481 3aez_A Pantothenate kinase; tr 35.1 15 0.00053 39.0 2.3 21 90-110 89-109 (312)
482 2www_A Methylmalonic aciduria 35.1 35 0.0012 36.8 5.1 36 91-126 74-109 (349)
483 3tqf_A HPR(Ser) kinase; transf 35.0 21 0.0007 34.4 2.8 21 90-110 15-35 (181)
484 1ltq_A Polynucleotide kinase; 34.9 16 0.00056 38.3 2.4 18 93-110 4-21 (301)
485 1uj2_A Uridine-cytidine kinase 34.8 19 0.00063 36.8 2.8 18 93-110 24-41 (252)
486 3u06_A Protein claret segregat 34.8 26 0.00087 38.8 4.0 24 85-108 131-156 (412)
487 3nh6_A ATP-binding cassette SU 34.7 16 0.00054 38.8 2.2 20 89-108 78-97 (306)
488 3bfv_A CAPA1, CAPB2, membrane 34.6 32 0.0011 35.6 4.6 34 92-125 83-117 (271)
489 2ck3_A ATP synthase subunit al 34.5 42 0.0014 38.0 5.7 36 81-116 149-187 (510)
490 1xti_A Probable ATP-dependent 34.4 59 0.002 35.0 7.1 67 118-190 249-326 (391)
491 1ji0_A ABC transporter; ATP bi 34.4 19 0.00065 36.6 2.8 20 89-108 30-49 (240)
492 1g6h_A High-affinity branched- 34.4 19 0.00065 37.0 2.8 20 89-108 31-50 (257)
493 3fgn_A Dethiobiotin synthetase 34.4 39 0.0013 34.6 5.1 33 95-127 31-63 (251)
494 1mv5_A LMRA, multidrug resista 34.2 16 0.00056 37.1 2.2 20 89-108 26-45 (243)
495 2afh_E Nitrogenase iron protei 33.9 38 0.0013 35.2 5.1 32 94-125 5-36 (289)
496 3ea0_A ATPase, para family; al 33.7 34 0.0012 34.2 4.6 31 95-125 9-40 (245)
497 3sqw_A ATP-dependent RNA helic 33.7 1.3E+02 0.0045 34.6 10.3 69 117-191 286-368 (579)
498 3ake_A Cytidylate kinase; CMP 33.7 18 0.00063 35.2 2.4 19 93-111 4-22 (208)
499 1cp2_A CP2, nitrogenase iron p 33.6 39 0.0013 34.6 5.0 32 94-125 4-35 (269)
500 1s7o_A Hypothetical UPF0122 pr 33.6 2.1E+02 0.007 25.0 9.1 47 875-921 23-70 (113)
No 1
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-152 Score=1437.29 Aligned_cols=907 Identities=50% Similarity=0.873 Sum_probs=790.0
Q ss_pred cceeeecCCCCCCCchhhhcccCCCCCCchhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh
Q 002183 38 CVHEVAVPSGYALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR 117 (955)
Q Consensus 38 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~ 117 (955)
+.+....|+.|..... .+.....+...++|+|+|+|.+|++.+..|++++|+||||||||++|++|++..+.
T Consensus 154 ~~~~~~~~~~~~~~~l--------~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~ 225 (1108)
T 3l9o_A 154 VRHQVALPPNYDYTPI--------AEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK 225 (1108)
T ss_dssp EEEEECCSSCCCSSTT--------TTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCcccCCC--------ChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh
Confidence 4455555665433332 12344456788999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCC
Q 002183 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR 197 (955)
Q Consensus 118 ~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~ 197 (955)
++++++|++||++|++|++++|.+.++++|+++|+.+.+++++|+||||++|+++++++...++++++|||||||++.++
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~ 305 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK 305 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSH
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred CChHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhch
Q 002183 198 ERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFRE 277 (955)
Q Consensus 198 ~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~ 277 (955)
+|+..|+.++..+++++|+|+||||++|..++++|++.....++.++..+.+|+|+++++++.....++.+++..+.+..
T Consensus 306 ~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~ 385 (1108)
T 3l9o_A 306 ERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFRE 385 (1108)
T ss_dssp HHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECH
T ss_pred chHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999998888889999998888887
Q ss_pred hhHHHHHHHHHHhhccCCcc--CCCCCCCccCCCCC--CCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCC
Q 002183 278 DNFVKLQDTFLKQKIGGRRE--NGKASGRMAKGGSG--SGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLD 353 (955)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~ 353 (955)
.++...+..+.......+.. +.+...+...++.. .....+..++..+...+..++||||++++.|+.++..|...+
T Consensus 386 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~ 465 (1108)
T 3l9o_A 386 ENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD 465 (1108)
T ss_dssp HHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHH
T ss_pred hhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhcc
Confidence 77776664443222111110 00000001111100 113456667778877888899999999999999999998888
Q ss_pred CCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCC
Q 002183 354 FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLN 433 (955)
Q Consensus 354 ~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gid 433 (955)
+....+...+..++.+.+..+...|+.+++...+.+++.+||++|||+|++.+|+.+++.|++|.++|||||+++++|||
T Consensus 466 ~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GID 545 (1108)
T 3l9o_A 466 FNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLN 545 (1108)
T ss_dssp HHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCC
T ss_pred CCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCC
Confidence 88878888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCcccccccCcHHHH
Q 002183 434 MPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSI 513 (955)
Q Consensus 434 ip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~f~~~~~~i 513 (955)
+|++++||+...+||+..++|.++.+|+||+|||||+|.++.|+||+++++..+...+++++.+.++++.|+|+++|+|+
T Consensus 546 iP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~i 625 (1108)
T 3l9o_A 546 MPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMI 625 (1108)
T ss_dssp C--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_pred CCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHhhhcccchhhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHhccccCChhhHHHHHHHHHHHHHHHHHHHHHhcCch
Q 002183 514 LNLMSRAEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKLMSEITRPE 593 (955)
Q Consensus 514 l~ll~~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 593 (955)
+|+++..++. +++|+++||++||.....+.+++++++++++++.+..+++.++.+|++++.++...++.++..+.++.
T Consensus 626 lnll~~~~~~--~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 703 (1108)
T 3l9o_A 626 LNLMRVEGIS--PEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPA 703 (1108)
T ss_dssp HHHHHSTTCC--HHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHhcCCC--HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHHHHHHHHhChH
Confidence 9999998888 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCcEEEEccC-CccceeEEEEEeecCCC--------Cc-----ceec-------------------------C
Q 002183 594 RVLYYLGSGRLIKVREG-GTDWGWGVVVNVVKKPS--------AG-----VGTL-------------------------P 634 (955)
Q Consensus 594 ~~~~~l~~gr~v~~~~~-~~~~~~~~~~~~~~~~~--------~~-----~~~~-------------------------~ 634 (955)
++++||++||||.++++ +.+||||||+++....+ +. ++|+ |
T Consensus 704 ~~~~~l~~G~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1108)
T 3l9o_A 704 NALSFLQPGRLVEISVNGKDNYGWGAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRP 783 (1108)
T ss_dssp HHHHHCCTTEEEEECCTTCCEEEEEEEEEECCCC-----CCSSSSEEEEEECCCSTTCCSCCCSSCTTTTCCSGGGSSCC
T ss_pred HHHhhCCCCCEEEEecCCCcccceEEEEecccccccccccccCCCCCceeEEEEeccccccccccccccccccCCccccC
Confidence 99999999999999987 67899999999864321 11 3333 1
Q ss_pred ----CCCceEEEeecCCccceeceeeeecCCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHHHHHHHHH
Q 002183 635 ----SRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQI 710 (955)
Q Consensus 635 ----~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 710 (955)
+.+.+.++++++++|..|+++++.+|+++++...|+.+.+.+.++.+++|+|+|.++|+++|++++.++.+...++
T Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1108)
T 3l9o_A 784 AEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKI 863 (1108)
T ss_dssp SCC---CCCCCCCEESSCEEEEEEEECCCCTTTTSHHHHHHHHHHHHHHHHHCSSCCTTHHHHHHHCCCCHHHHHHHHHH
T ss_pred CCcccCCceEEEEechhheeeccceEEecCCCcCCHHHHHHHHHHHHHHHHhcCCCCcccChhhhcccCCHHHHHHHHHH
Confidence 1234567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccCCCccchhhhhh
Q 002183 711 EELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAA 789 (955)
Q Consensus 711 ~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~~~~~e~~~~~~VL~~lgyid~~~~vt~KGrvA 789 (955)
+.|+++|++||||.| ++++|+++++++.+++++++++++++++++++.++++|++|++||++|||||.+++||+|||||
T Consensus 864 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a 943 (1108)
T 3l9o_A 864 DVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVA 943 (1108)
T ss_dssp HHHHHHHHHSSCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHTSCTTTCCCSHHHHHH
T ss_pred HHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCcCCCCcCcHHhHHH
Confidence 999999999999999 9999999999999999999999999999889999999999999999999999999999999999
Q ss_pred hcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCCCchh
Q 002183 790 CLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDE 869 (955)
Q Consensus 790 ~eI~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~l~~~~~~ 869 (955)
|||+|+||||+|||||+|+|++|+|+||||||||||||+|+++.|.+++.|.+++.+++++|++|++++.+|++++++++
T Consensus 944 ~~i~~~~el~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 1023 (1108)
T 3l9o_A 944 CEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKD 1023 (1108)
T ss_dssp HC-CCTTHHHHHHHHHHHCCCSSCCTHHHHHTCC------------------CHHHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHhcCccHHHHHHHHHhCcccCCCHHHHHHHHhheeeecccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHH
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred hhhccCCccHHHHHHHHhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhcCCeee
Q 002183 870 YVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMF 949 (955)
Q Consensus 870 ~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ellrq~~~aa~~iG~~~L~~k~~~a~~~ikRdiVf 949 (955)
|+++ |+|+||+|||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++||++|+++|||||||
T Consensus 1024 ~~~~-~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~l~q~~~aa~~~g~~~l~~k~~~a~~~i~r~iv~ 1102 (1108)
T 3l9o_A 1024 YVES-FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVS 1102 (1108)
T ss_dssp HHHH-HCCSCHHHHHHHHC----CCGGGTC--CHHHHHHHHHHHHHHHSCCCC----CCCHHHHHHHHHHHHHHHHHTCC
T ss_pred hccC-CChHHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhcCCEEe
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 002183 950 SNSLYL 955 (955)
Q Consensus 950 ~~SLYl 955 (955)
++||||
T Consensus 1103 ~~slyl 1108 (1108)
T 3l9o_A 1103 AGSLYL 1108 (1108)
T ss_dssp CCCCC-
T ss_pred eccccC
Confidence 999997
No 2
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-149 Score=1400.20 Aligned_cols=911 Identities=50% Similarity=0.874 Sum_probs=827.0
Q ss_pred cccCCccceeeecCCCC--CCCchhhhcccCCCCCCchhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHH
Q 002183 32 RNLTRSCVHEVAVPSGY--ALTKDEAIHGTFANPVYNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 32 ~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~ 109 (955)
.....+|.|.+.+|+++ .++.+ . ..+.....|||+|+|+|.+|++.+.+|++++|+||||||||++|+
T Consensus 50 ~~~~~~~~h~~~~p~~~~~~~~~~---------~-~~p~~~~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~ 119 (1010)
T 2xgj_A 50 VRLSHQVRHQVALPPNYDYTPIAE---------H-KRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAE 119 (1010)
T ss_dssp EEEEEEEEEEEECCTTCCCCCGGG---------C-CCSSCSCCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHH
T ss_pred cccccCceeeecCCCCcccCCCCc---------c-cChhhHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHH
Confidence 34456899999999995 33333 1 112337889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEE
Q 002183 110 YAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFD 189 (955)
Q Consensus 110 ~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiD 189 (955)
++++..+.++.++||++||++|++|++++|.+.|+++|+++|+.+.+++++|+|||||+|.++++++...++++++||||
T Consensus 120 lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViD 199 (1010)
T 2xgj_A 120 YAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFD 199 (1010)
T ss_dssp HHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEE
T ss_pred HHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred ccccCCCCCChHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEee
Q 002183 190 EIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVV 269 (955)
Q Consensus 190 EaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~ 269 (955)
|||++.+++||..|+.++..+++++|+|+||||++|..++++|++...+.++.++..+.+|+|+.+++++.+.+.++.++
T Consensus 200 EaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~ 279 (1010)
T 2xgj_A 200 EVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVV 279 (1010)
T ss_dssp TGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEE
T ss_pred chhhhcccchhHHHHHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeee
Confidence 99999999999999999999999999999999999999999999998888999999999999999999987778889988
Q ss_pred cccchhchhhHHHHHHHHHHhhccCCcc--CCCCCCCccCCCCCC--CCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHH
Q 002183 270 DEKEQFREDNFVKLQDTFLKQKIGGRRE--NGKASGRMAKGGSGS--GGSDIFKIVKMIMERKFQPVIVFSFSRRECEQH 345 (955)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~l 345 (955)
+..+.+...++.+.+..+.......+.. ..+......+++... ....+..++..+...+..++||||+|++.|+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~l 359 (1010)
T 2xgj_A 280 DEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEEL 359 (1010)
T ss_dssp CTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHH
Confidence 8888887777776654332211100000 000000000000000 144567788888887878999999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEc
Q 002183 346 AMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFAT 425 (955)
Q Consensus 346 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT 425 (955)
+..|...++....++..+..++.+.+..+...|+.+++...+.+++.+||++|||||++.+|+.+++.|++|.++|||||
T Consensus 360 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT 439 (1010)
T 2xgj_A 360 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 439 (1010)
T ss_dssp HHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCccccc
Q 002183 426 ETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVST 505 (955)
Q Consensus 426 ~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~ 505 (955)
+++++|||+|++++||.+..+||+..++|.++.+|+||+|||||+|.+..|.||+++++..+...+.+++.+.++++.|+
T Consensus 440 ~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~ 519 (1010)
T 2xgj_A 440 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSA 519 (1010)
T ss_dssp GGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCC
T ss_pred hHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccc
Confidence 99999999999999998888899999999999999999999999999889999999988878889999999999999999
Q ss_pred ccCcHHHHHHhhhcccchhhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHhccccCChhhHHHHHHHHHHHHHHHHHH
Q 002183 506 FRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGEAEVAEYHKLKLDIAQLEKKL 585 (955)
Q Consensus 506 f~~~~~~il~ll~~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 585 (955)
|.++|+|++|+++..+++ +++++++||++|+.....+.++.++++++.+++.+...++.++.+|++++.++...++.+
T Consensus 520 f~~~~~~ilnll~~~~~~--~e~ll~rsf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 597 (1010)
T 2xgj_A 520 FHLGYNMILNLMRVEGIS--PEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDV 597 (1010)
T ss_dssp CCCCHHHHHHHHHSSSCC--HHHHHHHCHHHHHHHHHHHHHHHHC-CHHHHHHSSCCCSCTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCChhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888 999999999999999999999999999999999999888999999999999999999999
Q ss_pred HHHhcCchhhhhccCCCcEEEEcc-CCccceeEEEEEeecCC-CCc------------ceec------------------
Q 002183 586 MSEITRPERVLYYLGSGRLIKVRE-GGTDWGWGVVVNVVKKP-SAG------------VGTL------------------ 633 (955)
Q Consensus 586 ~~~~~~~~~~~~~l~~gr~v~~~~-~~~~~~~~~~~~~~~~~-~~~------------~~~~------------------ 633 (955)
+....++.++++||++||+|.++. ++.+++||||+++.+.. +++ ++|+
T Consensus 598 ~~~~~~~~~~~~~l~~Gr~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 677 (1010)
T 2xgj_A 598 RQVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNP 677 (1010)
T ss_dssp HHHHTSHHHHGGGCCTTEEEEEEETTTEEEEEEEEEEEEECCCSSCTTCCCCTTTTEEEEEEEEEEETTSCGGGCCTTCC
T ss_pred HHHHhccHHHHhhcCCCcEEEEEcCCCCcceeEEEEecccccCCCccccccccCCceeEEEEeecccccccccccccccc
Confidence 999999999999999999999998 56679999999875331 000 1221
Q ss_pred -------C----CCCceEEEeecCCccceeceeeeecCCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChH
Q 002183 634 -------P----SRGGGYIVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPE 702 (955)
Q Consensus 634 -------~----~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 702 (955)
| +++.+.++++++++|..|+.+++.+|+++++...|+.+.+.+.++.++++++.|.+||+++|++++.+
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 757 (1010)
T 2xgj_A 678 TLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDED 757 (1010)
T ss_dssp CCCTTCCBCCTTCCEEEEEEEECGGGEEEEEEEECCCCSSTTCSSSHHHHHHHHHHHHHHSSSCCCBCCTTTTSCCCCHH
T ss_pred ccccccCCCCCCcCCceEEEEechhhcceeeeeeEecccccCChHHHHHHHHHHHHHHHhcccCCcccCchhhhccccHH
Confidence 1 35578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccCCCc
Q 002183 703 VVDLVNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDADGV 781 (955)
Q Consensus 703 ~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~~~~~e~~~~~~VL~~lgyid~~~~ 781 (955)
+.+...+++.+++++++||||.| ++++|+++++++.+++++++++++++++.+++.+++||++|++||++|||||++++
T Consensus 758 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~ 837 (1010)
T 2xgj_A 758 FLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDI 837 (1010)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSBCTTCC
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCcCCCCc
Confidence 99999999999999999999999 99999999999999999999999999998889899999999999999999999899
Q ss_pred cchhhhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCccccccchhHHHHHHHHHHHHHHHHHHHHHc
Q 002183 782 VQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNEC 861 (955)
Q Consensus 782 vt~KGrvA~eI~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~ 861 (955)
||+||||||||+++||||+|||||+|+|++|+|+||||+|||||||+|.++.|.++++|.+++++++++|++|+++|.+|
T Consensus 838 v~~kGr~a~~i~~~~el~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 917 (1010)
T 2xgj_A 838 IELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDS 917 (1010)
T ss_dssp BCHHHHHHHTCCSSCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred CCCCCchhhhhccCCccHHHHHHHHhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Q 002183 862 KLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASE 941 (955)
Q Consensus 862 ~l~~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ellrq~~~aa~~iG~~~L~~k~~~a~~ 941 (955)
++++++++|+++ |+|+||+|||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++||++|++
T Consensus 918 ~~~~~~~~~~~~-~~~~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~~~l~~~~~~a~~ 996 (1010)
T 2xgj_A 918 KIEVVEKDYVES-FRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLK 996 (1010)
T ss_dssp TCCCCHHHHHHT-SCCTTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCCChhHhccc-CChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeecCCCC
Q 002183 942 SLRRGIMFSNSLYL 955 (955)
Q Consensus 942 ~ikRdiVf~~SLYl 955 (955)
+|||||||++||||
T Consensus 997 ~i~R~iv~~~sly~ 1010 (1010)
T 2xgj_A 997 LIHRDIVSAGSLYL 1010 (1010)
T ss_dssp HHSCGGGGCCCC-C
T ss_pred hccCCeEecccccC
Confidence 99999999999997
No 3
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=6.6e-143 Score=1342.20 Aligned_cols=880 Identities=35% Similarity=0.606 Sum_probs=761.2
Q ss_pred CchhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC
Q 002183 65 YNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
+.+.++..|||+|+|+|.++++.+.+|++++|+||||||||++|++++...+.++.++||++|+++|++|++++|++.++
T Consensus 28 l~~~~~~~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 28 LIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp HCSSCSCCCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred hhHhHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --CeeEEecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccc
Q 002183 145 --DVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSAT 222 (955)
Q Consensus 145 --~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT 222 (955)
.++.++|+.+.+++++|+|+||++|.++++++...+.++++|||||||++.+++||.+|++++.++++++|+|+||||
T Consensus 108 ~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT 187 (997)
T 4a4z_A 108 DVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSAT 187 (997)
T ss_dssp -CCEEEECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECC
T ss_pred CCeEEEEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCC
Confidence 899999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCC-------
Q 002183 223 MSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGR------- 295 (955)
Q Consensus 223 ~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 295 (955)
++|..+|++|++.....+++++.+..||+|+.++++.. ..++.+++....+...++......+........
T Consensus 188 ~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 265 (997)
T 4a4z_A 188 VPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAK--KELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNG 265 (997)
T ss_dssp CTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEET--TEEEEEECTTCCBCHHHHHHHHHHHC--------------
T ss_pred CCChHHHHHHHhcccCCceEEEecCCCCccceEEEecC--CcchhcccchhhhhHHHHHHHHHHhhcccccccccccccc
Confidence 99999999999998888999999999999999988763 467777888878877777766544432111000
Q ss_pred ------cc------CCCC--------CCCccCC-----------------CCCCCCCcHHHHHHHHHHcCCCcEEEEEcC
Q 002183 296 ------RE------NGKA--------SGRMAKG-----------------GSGSGGSDIFKIVKMIMERKFQPVIVFSFS 338 (955)
Q Consensus 296 ------~~------~~~~--------~~~~~~~-----------------~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s 338 (955)
.+ .++. .....++ ........+..++..+...+..++||||+|
T Consensus 266 ~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~s 345 (997)
T 4a4z_A 266 RGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFS 345 (997)
T ss_dssp ---------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECC
Confidence 00 0000 0000000 001233456788888888888999999999
Q ss_pred hHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCC
Q 002183 339 RRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGL 418 (955)
Q Consensus 339 ~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~ 418 (955)
++.|+.++..|...++.+..++..+..++++.+..+.++|+.++++..+.+++.+||++|||||++.+|+.+++.|++|.
T Consensus 346 r~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~ 425 (997)
T 4a4z_A 346 KKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGF 425 (997)
T ss_dssp HHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeC-CcccHHHHHHhHhC
Q 002183 419 VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVD-EQMEMNTLKDMVLG 497 (955)
Q Consensus 419 i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~-~~~~~~~~~~l~~~ 497 (955)
++|||||+++++|||+|++++|+.+..+||+..++|+++.+|+||+|||||+|.++.|.||+++. +..+...+++++.+
T Consensus 426 ~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~~ 505 (997)
T 4a4z_A 426 IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMG 505 (997)
T ss_dssp CSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHHS
T ss_pred CcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999984 55678889999999
Q ss_pred CCCcccccccCcHHHHHHhhhcccchhhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHhccccCCh----hhHHHHHH
Q 002183 498 KPAPLVSTFRLSYYSILNLMSRAEGQFTAEHVIKNSFHQFQYEKALPDIGKKVSKLEEEAASLDASGE----AEVAEYHK 573 (955)
Q Consensus 498 ~~~~l~s~f~~~~~~il~ll~~~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~y~~ 573 (955)
.++++.|+|+++|+|++|+++..... +++|+++||.+|+.....+..++.+.++++++..+....+ .++.+|++
T Consensus 506 ~~~~l~s~~~~~ynm~l~ll~~~~~~--~~~~l~~sf~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~c~~c~~~~~~~~~ 583 (997)
T 4a4z_A 506 VPTRLQSQFRLTYNMILNLLRIEALR--VEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDIEKFLE 583 (997)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHCTTH--HHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CHHH
T ss_pred CCcccccccccchHHHHHHHhhcccc--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhccccccccHHHHHH
Confidence 99999999999999999999888887 9999999999999999999999999999999877654332 58999999
Q ss_pred HHHHHHHHHHHHHHHhcCchhhhhccCCCcEEEEccCCccceeEEEEEeecCCC-CcceecC------------------
Q 002183 574 LKLDIAQLEKKLMSEITRPERVLYYLGSGRLIKVREGGTDWGWGVVVNVVKKPS-AGVGTLP------------------ 634 (955)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gr~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------------ 634 (955)
++.++.++++.+.....++.+++++|++||+|.+++++.+++||||+++...++ ..+.|+.
T Consensus 584 ~r~~~~~~~~~~~~~~~~~~~~~~~l~~gr~v~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 663 (997)
T 4a4z_A 584 LMLAYKEATVNLMQEMVKSPSILHILKEGRLVAFRDPNDCLKLGFVFKVSLKDAVCVIMTFTKPYKLPNGEPNHLIYFPK 663 (997)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTHHHHTCTTEEEEEECTTCCEEEEEEEEEETTTTEEEEEC-CCCCC----------CCTT
T ss_pred HHHHHHHHHHHHHHHHhcCHhHHhhCCCCCEEEEecCCCCeeEEEEEeeccCCCCCceEEEeccccccccCccccCCCcc
Confidence 999999999988666666777999999999999998877789999999875432 1222221
Q ss_pred ------------CCCceEEEeecCCccceeceeeeecC-CCCC--ChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCC
Q 002183 635 ------------SRGGGYIVPVQLPLISTLSKIRLSVP-PDLR--PLDARQSILLAVQELESRFPQGLPKLNPVKDMKIE 699 (955)
Q Consensus 635 ------------~~~~~~~~~~~~~~i~~i~~~~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~ 699 (955)
..+.+.++++++++|..|+++++.+| +++. +...++.+.+.+.++... |.++|+++|+++
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 738 (997)
T 4a4z_A 664 ADGYRRRNFPKFQKTDFYMEEVPVTAIEVITKRKFAAPLGKVIKKDVAALNEFNAETNNILDG-----KTLKEAINIEKQ 738 (997)
T ss_dssp CHHHHHHHCCCCCCCCCCEEEEECC-CCEEEEEECC-CHHHHHHTCHHHHHHHHHHHHHHHHS-----CCCCCC------
T ss_pred cccccccccCcccCCceEEEEeccchhhhhhcccccCChHhhhcCCHHHHHHHHHHHHHHhcc-----CCCCchhhcccc
Confidence 34556788899999999999998887 4332 556677777777777553 778999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCccC
Q 002183 700 DPEVVDLVNQIEELEHKLFAHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHIDA 778 (955)
Q Consensus 700 ~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~~~~~e~~~~~~VL~~lgyid~ 778 (955)
+.++.+...+++.++.++++||||+| ++++|+++++++.++++++++|++++++ +++.++++|++|++||++|||||+
T Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~vL~~l~~~~~ 817 (997)
T 4a4z_A 739 GLKIHQILLDRTNIRDEIFKLKSIKCPNLSQHIVPKFKAHVIKKKIEELYHLMSD-QNLSLLPDYEKRLAVLKDTEFIDQ 817 (997)
T ss_dssp CCHHHHHHHHHHHHHHC------------CCSHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHTTSBCT
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHcCCcCC
Confidence 99999999999999999999999999 9999999999999999999999999999 788899999999999999999999
Q ss_pred CCccchhhhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCC--ccccccchhHHHHHHHHHHHHHHHHH
Q 002183 779 DGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKS--SEQINLRMELAKPLQQLQESARKIAE 856 (955)
Q Consensus 779 ~~~vt~KGrvA~eI~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~--~~~~~~~~~l~~~~~~l~~~~~~i~~ 856 (955)
+++||+||||||||+|+|||++|||||+|+|++|+|+||||||||||||+|. ++.|.++++|++++.+++++|.+|++
T Consensus 818 ~~~v~~kgr~a~~i~~~~el~~te~~~~~~~~~l~~~~~~a~ls~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 897 (997)
T 4a4z_A 818 NHNVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEPPIVTPRLAKGKQRIEEIYKKMLC 897 (997)
T ss_dssp TCCBCHHHHHHTTCCSSCHHHHHHHHHSSGGGGCCHHHHHHHHGGGSCCCCCSSCCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHhHHHhhhcCccHHHHHHHHHhCcccCCCHHHHHHHHhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 44578899999999999999999999
Q ss_pred HHHHcCCCCC--chhhhhccCCccHHHHHHHHhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Q 002183 857 IQNECKLEVN--VDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEK 934 (955)
Q Consensus 857 ~~~~~~l~~~--~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ellrq~~~aa~~iG~~~L~~ 934 (955)
++.+|+++++ +++|+++ |+|+||+|||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++
T Consensus 898 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~~~q~~~aa~~~g~~~l~~ 976 (997)
T 4a4z_A 898 VFNTHQIPLTQDEAEFLDR-KRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKTASIIIGNSTLHM 976 (997)
T ss_dssp HHHHTTCCCCHHHHHGGGS-CTTTTHHHHHHHHHTCCHHHHHHTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCCCccchhhhccC-CChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999986 4789999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCeeeecCCCC
Q 002183 935 KFAAASESLRRGIMFSNSLYL 955 (955)
Q Consensus 935 k~~~a~~~ikRdiVf~~SLYl 955 (955)
||++|+++|||||||++||||
T Consensus 977 k~~~a~~~i~R~iv~~~slyl 997 (997)
T 4a4z_A 977 KMSRAQELIKRDIVFAASLYL 997 (997)
T ss_dssp HHHHHHHHHSCGGGGCCCTTC
T ss_pred HHHHHHHHhcCCeeecccccC
Confidence 999999999999999999997
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=3e-52 Score=543.60 Aligned_cols=420 Identities=25% Similarity=0.367 Sum_probs=315.0
Q ss_pred hhhhhcC-CCC-CCHHHHHHHHHH-hcCCcEEEEcCCCCchHHHHHHHHHHHHh-----------cCCeEEEEccChhhH
Q 002183 67 GEMAKTY-SFE-LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFR-----------DKQRVIYTSPLKALS 132 (955)
Q Consensus 67 ~~~~~~~-~f~-l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~~~i~~~l~-----------~~~~vl~l~PtkaLa 132 (955)
......| ||+ |+++|.++++.+ ..++|++|+||||||||++|++||+..+. .+.++||++|+|||+
T Consensus 68 ~~~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa 147 (1724)
T 4f92_B 68 KYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLV 147 (1724)
T ss_dssp GGGSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHH
Confidence 3333445 588 999999999985 67899999999999999999999999984 257899999999999
Q ss_pred HHHHHHHHHhcC----CeeEEecccccCC----CCCEEEEeHHHHHHHHhcCC--ccCCccceEEEEccccCCCCCChHH
Q 002183 133 NQKYRELHQEFK----DVGLMTGDVTLSP----NASCLVMTTEILRGMLYRGS--EVLKEVAWVIFDEIHYMKDRERGVV 202 (955)
Q Consensus 133 ~Q~~~~l~~~~~----~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~~~--~~l~~l~~vIiDEaH~l~d~~rg~~ 202 (955)
+|++++|.+.++ .|+.+|||.+.++ +++|+|||||++..+++++. ..++++++||+||+|++.| +||.+
T Consensus 148 ~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~ 226 (1724)
T 4f92_B 148 QEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPV 226 (1724)
T ss_dssp HHHHHHHHHHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHH
Confidence 999999999876 5788999998765 58999999999988887654 3578999999999999988 69999
Q ss_pred HHHHHH-------hCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchh
Q 002183 203 WEESII-------FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQF 275 (955)
Q Consensus 203 ~~~ii~-------~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~ 275 (955)
||.++. .+++++|+|+||||+||.+++++|++......+.++.+++||+||+++++... .....
T Consensus 227 lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~---------~~~~~ 297 (1724)
T 4f92_B 227 LEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGIT---------EKKAI 297 (1724)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEEC---------CCCHH
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccC---------Ccchh
Confidence 998775 35788999999999999999999998766566788999999999987653211 11111
Q ss_pred chhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHH-cCCCcEEEEEcChHHHHHHHHHhccCCC
Q 002183 276 REDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME-RKFQPVIVFSFSRRECEQHAMSMSKLDF 354 (955)
Q Consensus 276 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~IVF~~s~~~~~~la~~L~~~~~ 354 (955)
. .+. .+.. .+...+.+ ...+++||||+||+.|+.+|..|.+...
T Consensus 298 ~--~~~-~~~~--------------------------------~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~ 342 (1724)
T 4f92_B 298 K--RFQ-IMNE--------------------------------IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCL 342 (1724)
T ss_dssp H--HHH-HHHH--------------------------------HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHH
T ss_pred h--hhH-HHHH--------------------------------HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHh
Confidence 0 000 0000 01111111 2356899999999999999998854100
Q ss_pred CCHHHHHHHHHHH--HHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccC
Q 002183 355 NTQEEKDTVEQVF--QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGL 432 (955)
Q Consensus 355 ~~~~e~~~i~~~~--~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gi 432 (955)
..... ..+. ..........+........+.+++.+||++|||||++.+|..||+.|++|.++|||||+|+|+||
T Consensus 343 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GV 418 (1724)
T 4f92_B 343 EKDTL----GLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGV 418 (1724)
T ss_dssp HTTST----TCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHS
T ss_pred hccch----hhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhC
Confidence 00000 0000 00000000011222334578899999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecceeccCCCC--cccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCcccccccCcH
Q 002183 433 NMPAKTVVFTAVKKWDGDSH--RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSY 510 (955)
Q Consensus 433 dip~~~vVi~~~~~~d~~~~--~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~f~~~~ 510 (955)
|+|+++|||.++..||+... .|+++.+|.||+|||||+|.|..|.+|++++.. +...+..++.+ ..|+.|+|....
T Consensus 419 NlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~-~~~~~~~ll~~-~~pieS~l~~~l 496 (1724)
T 4f92_B 419 NLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHG-ELQYYLSLLNQ-QLPIESQMVSKL 496 (1724)
T ss_dssp CCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEEST-TCCHHHHHTTT-CSCCCCCTTTTH
T ss_pred CCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecch-hHHHHHHHHcC-CCcchhhccccH
Confidence 99999999999999998643 578999999999999999999999999998765 33445566554 568999997765
Q ss_pred HHHHHhhh----cccchhhHHHHHHhhHHHHH
Q 002183 511 YSILNLMS----RAEGQFTAEHVIKNSFHQFQ 538 (955)
Q Consensus 511 ~~il~ll~----~~~~~~~~~~~l~~sf~~~~ 538 (955)
...+|..- +.+.. +..+.++.+|...+
T Consensus 497 ~d~L~aeI~~g~i~~~~-~a~~~l~~T~~~~r 527 (1724)
T 4f92_B 497 PDMLNAEIVLGNVQNAK-DAVNWLGYAYLYIR 527 (1724)
T ss_dssp HHHHHHHHHHTSCCBHH-HHHHHHHHSHHHHH
T ss_pred HHHHHHHHHHhhcCCHH-HHHHHHhccHHHHH
Confidence 54444321 12222 34556777776433
No 5
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.4e-52 Score=539.39 Aligned_cols=402 Identities=25% Similarity=0.370 Sum_probs=312.6
Q ss_pred CCC-CCHHHHHHHHHH-hcCCcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccChhhHHHHHHHHHHhcC-----
Q 002183 74 SFE-LDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFK----- 144 (955)
Q Consensus 74 ~f~-l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~PtkaLa~Q~~~~l~~~~~----- 144 (955)
+|+ |+|+|.++++.+ ..++|++|+||||||||++|++||+..+.+ ++++||++|+|||++|++++|.+.|+
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 577 999999999998 567889999999999999999999999853 67999999999999999999998775
Q ss_pred CeeEEecccccC----CCCCEEEEeHHHHHHHHhcC--CccCCccceEEEEccccCCCCCChHHHHHHHHh-------CC
Q 002183 145 DVGLMTGDVTLS----PNASCLVMTTEILRGMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF-------LP 211 (955)
Q Consensus 145 ~vg~~tGd~~~~----~~~~IlV~Tpe~L~~~l~~~--~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~-------l~ 211 (955)
.|+.++||.+.+ .+++|+|||||++..++.+. ...++++++||+||+|++.+ .||..|+.++.. ++
T Consensus 1003 ~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~ 1081 (1724)
T 4f92_B 1003 KVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIE 1081 (1724)
T ss_dssp CEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTS
T ss_pred EEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhhcC
Confidence 588899988754 46899999999998888654 34578999999999999988 589999987754 46
Q ss_pred CcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhh
Q 002183 212 PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQK 291 (955)
Q Consensus 212 ~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 291 (955)
+++|+|+||||++|+.++++|++... ..++.+..++||+|++.++...+.. +.......
T Consensus 1082 ~~~riI~lSATl~N~~dla~WL~~~~-~~~~~~~~~~RPvpL~~~i~~~~~~---------------~~~~~~~~----- 1140 (1724)
T 4f92_B 1082 RPIRIVALSSSLSNAKDVAHWLGCSA-TSTFNFHPNVRPVPLELHIQGFNIS---------------HTQTRLLS----- 1140 (1724)
T ss_dssp SCCEEEEEESCBTTHHHHHHHHTCCS-TTEEECCGGGCSSCEEEEEEEECCC---------------SHHHHHHT-----
T ss_pred CCceEEEEeCCCCCHHHHHHHhCCCC-CCeEEeCCCCCCCCeEEEEEeccCC---------------Cchhhhhh-----
Confidence 78999999999999999999998543 4678889999999999877532210 00000000
Q ss_pred ccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHH-HcCCCcEEEEEcChHHHHHHHHHhccCC--------CCCHHHHHH
Q 002183 292 IGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIM-ERKFQPVIVFSFSRRECEQHAMSMSKLD--------FNTQEEKDT 362 (955)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~IVF~~s~~~~~~la~~L~~~~--------~~~~~e~~~ 362 (955)
....+...+. ....+|+||||+||+.|+.+|..|.... +.....
T Consensus 1141 ------------------------~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~--- 1193 (1724)
T 4f92_B 1141 ------------------------MAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTE--- 1193 (1724)
T ss_dssp ------------------------THHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCH---
T ss_pred ------------------------hcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccH---
Confidence 0011111222 2356799999999999999998874310 100000
Q ss_pred HHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEe
Q 002183 363 VEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFT 442 (955)
Q Consensus 363 i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~ 442 (955)
......+..+. ...+..++.+||++|||||++.+|+.|+++|++|.++|||||+++++|||+|+++|||.
T Consensus 1194 --~~l~~~l~~~~--------d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~ 1263 (1724)
T 4f92_B 1194 --KDLIPYLEKLS--------DSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIM 1263 (1724)
T ss_dssp --HHHHHHHTTCC--------CHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEE
T ss_pred --HHHHHHHhhcc--------cHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEe
Confidence 11111222221 24578899999999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCC--cccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCcccccccCcHHHHHHh-hhc
Q 002183 443 AVKKWDGDSH--RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNL-MSR 519 (955)
Q Consensus 443 ~~~~~d~~~~--~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~f~~~~~~il~l-l~~ 519 (955)
++.+||+..+ .|.++.+|.||+|||||+|.|+.|.|++++++. +...+++++. .+.|+.|.+.......++. +..
T Consensus 1264 ~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~-~~~~~~~ll~-~~~pveS~L~~~l~~~l~~eI~~ 1341 (1724)
T 4f92_B 1264 DTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS-KKDFFKKFLY-EPLPVESHLDHCMHDHFNAEIVT 1341 (1724)
T ss_dssp CSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG-GHHHHHHHTT-SCBCCCCCGGGSCHHHHHHHHHT
T ss_pred cCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch-HHHHHHHHhC-CCCceeeecccchHHHHHHHHHh
Confidence 9999999754 478999999999999999999999999999765 5566777764 5689999997665444443 322
Q ss_pred ccch--hhHHHHHHhhHHH
Q 002183 520 AEGQ--FTAEHVIKNSFHQ 536 (955)
Q Consensus 520 ~~~~--~~~~~~l~~sf~~ 536 (955)
..+. .+..+.+..+|..
T Consensus 1342 ~~i~~~~d~~~~l~~Tfl~ 1360 (1724)
T 4f92_B 1342 KTIENKQDAVDYLTWTFLY 1360 (1724)
T ss_dssp TSCCBHHHHHHHHTTSSHH
T ss_pred cccCCHHHHHHHHHhhHHH
Confidence 2222 2466778888764
No 6
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.5e-49 Score=485.41 Aligned_cols=396 Identities=30% Similarity=0.449 Sum_probs=301.6
Q ss_pred CCCCchhhhhcCCCC-CCHHHHHHHHH-HhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHH
Q 002183 62 NPVYNGEMAKTYSFE-LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 62 ~~~~~~~~~~~~~f~-l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~ 138 (955)
.+.........+||. |+|+|.++++. +.++++++++||||||||++|.++++..+. ++.+++|++|+++|++|++++
T Consensus 15 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~ 94 (715)
T 2va8_A 15 LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLT 94 (715)
T ss_dssp SCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHH
Confidence 344455555668995 99999999999 788999999999999999999999998876 789999999999999999999
Q ss_pred HHHhc--C-CeeEEecccccCC----CCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCC
Q 002183 139 LHQEF--K-DVGLMTGDVTLSP----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP 211 (955)
Q Consensus 139 l~~~~--~-~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~ 211 (955)
++.+. + .++..+|+..... +++|+|+|||+|..++.+....++++++||+||||.+.+..||..++.++..++
T Consensus 95 ~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~ 174 (715)
T 2va8_A 95 FKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK 174 (715)
T ss_dssp HGGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH
T ss_pred HHHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc
Confidence 95432 2 7889999876554 689999999999999988777789999999999999999899999999888776
Q ss_pred CcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCce--EEeeccc--chhchhhHHHHHHHH
Q 002183 212 PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGL--YLVVDEK--EQFREDNFVKLQDTF 287 (955)
Q Consensus 212 ~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~l 287 (955)
+.|+|+||||++|..++++|++ +.++..+.||+|+...++..+.... ....... ..+.
T Consensus 175 -~~~ii~lSATl~n~~~~~~~l~------~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 236 (715)
T 2va8_A 175 -RRNLLALSATISNYKQIAKWLG------AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVH----------- 236 (715)
T ss_dssp -TSEEEEEESCCTTHHHHHHHHT------CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEE-----------
T ss_pred -cCcEEEEcCCCCCHHHHHHHhC------CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcc-----------
Confidence 7999999999999999999996 3567888999999866543321111 0000000 0000
Q ss_pred HHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCC---CCCHHHHHHHH
Q 002183 288 LKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLD---FNTQEEKDTVE 364 (955)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~---~~~~~e~~~i~ 364 (955)
.......++..+.. ..+++||||++++.|+.++..|.... +....+...+.
T Consensus 237 -------------------------~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 290 (715)
T 2va8_A 237 -------------------------GDDAIIAYTLDSLS-KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEIL 290 (715)
T ss_dssp -------------------------SSSHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHH
T ss_pred -------------------------cchHHHHHHHHHHh-cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHH
Confidence 01122233332222 45899999999999999999997642 22333332222
Q ss_pred HHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecc
Q 002183 365 QVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV 444 (955)
Q Consensus 365 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~ 444 (955)
.....+ .+........+..++..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||.+.
T Consensus 291 ----~~~~~i--~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~ 364 (715)
T 2va8_A 291 ----KQLDDI--EEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDI 364 (715)
T ss_dssp ----HHHHTC--CSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC
T ss_pred ----HHHHHh--hhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCC
Confidence 222222 12222334567788889999999999999999999999999999999999999999999999999877
Q ss_pred eecc---CCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccH-HHHHHhHhCCCCccccccc
Q 002183 445 KKWD---GDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEM-NTLKDMVLGKPAPLVSTFR 507 (955)
Q Consensus 445 ~~~d---~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~-~~~~~l~~~~~~~l~s~f~ 507 (955)
..|| +....|.+..+|.||+|||||.|.+..|.||+++++..+. ..+++++.+.++++.|.+.
T Consensus 365 ~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~ 431 (715)
T 2va8_A 365 YRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLG 431 (715)
T ss_dssp --------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCC
T ss_pred eeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCC
Confidence 7798 3334689999999999999999998899999999776432 3456777888888887653
No 7
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=6.7e-49 Score=483.66 Aligned_cols=425 Identities=28% Similarity=0.384 Sum_probs=328.8
Q ss_pred CCCCCCchhhhhcCCCC-CCHHHHHHHHH-HhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHH
Q 002183 60 FANPVYNGEMAKTYSFE-LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKY 136 (955)
Q Consensus 60 ~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~ 136 (955)
++++.........+||. |+|+|.++++. +..+++++++||||||||++|.++++..+. ++.+++|++|+++|++|++
T Consensus 6 l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~ 85 (720)
T 2zj8_A 6 LRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKF 85 (720)
T ss_dssp CCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHH
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHH
Confidence 33344455556668995 99999999998 889999999999999999999999998775 6899999999999999999
Q ss_pred HHHHHh--cC-CeeEEecccccCC----CCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh
Q 002183 137 RELHQE--FK-DVGLMTGDVTLSP----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (955)
Q Consensus 137 ~~l~~~--~~-~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~ 209 (955)
++|+.+ ++ .++.++|+...+. +++|+|+|||++..++.+....++++++||+||||++.+++||..++.++..
T Consensus 86 ~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~ 165 (720)
T 2zj8_A 86 QEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAH 165 (720)
T ss_dssp HHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHH
Confidence 999643 23 8899999887654 6899999999999998887777899999999999999999999999999988
Q ss_pred CCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHH
Q 002183 210 LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLK 289 (955)
Q Consensus 210 l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 289 (955)
++++.|+|+||||++|..++++|++ ...+..+.||+|+...++..+ .++ ..+....
T Consensus 166 l~~~~~ii~lSATl~n~~~~~~~l~------~~~~~~~~rp~~l~~~~~~~~--~~~-~~~~~~~--------------- 221 (720)
T 2zj8_A 166 MLGKAQIIGLSATIGNPEELAEWLN------AELIVSDWRPVKLRRGVFYQG--FVT-WEDGSID--------------- 221 (720)
T ss_dssp HBTTBEEEEEECCCSCHHHHHHHTT------EEEEECCCCSSEEEEEEEETT--EEE-ETTSCEE---------------
T ss_pred hhcCCeEEEEcCCcCCHHHHHHHhC------CcccCCCCCCCcceEEEEeCC--eee-ccccchh---------------
Confidence 8778999999999999999999986 456778899999987654321 111 1110000
Q ss_pred hhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccC--CCCCHHHHHHHHHHH
Q 002183 290 QKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL--DFNTQEEKDTVEQVF 367 (955)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~--~~~~~~e~~~i~~~~ 367 (955)
. ......++..+.. ..+++||||++++.|+.++..|.+. .+....+...+.
T Consensus 222 ----------------------~-~~~~~~~~~~~~~-~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~--- 274 (720)
T 2zj8_A 222 ----------------------R-FSSWEELVYDAIR-KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALN--- 274 (720)
T ss_dssp ----------------------E-CSSTTHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHH---
T ss_pred ----------------------h-hhHHHHHHHHHHh-CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHH---
Confidence 0 0111222222222 3489999999999999999999652 122222222221
Q ss_pred HHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceec
Q 002183 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447 (955)
Q Consensus 368 ~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~ 447 (955)
.....+. ..+....+.+++..||++|||+|++.+|+.+++.|++|.++|||||+++++|||+|++++||.+...|
T Consensus 275 -~~~~~i~----~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~y 349 (720)
T 2zj8_A 275 -ELADSLE----ENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRY 349 (720)
T ss_dssp -HHHHTSC----SCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEEC
T ss_pred -HHHHHHh----cccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeee
Confidence 1222221 22334457888899999999999999999999999999999999999999999999999999888889
Q ss_pred cCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCcccccccCcHH---HHHHhhhcccc-h
Q 002183 448 DGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYY---SILNLMSRAEG-Q 523 (955)
Q Consensus 448 d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~f~~~~~---~il~ll~~~~~-~ 523 (955)
|+.+..|.++.+|.||+|||||.|.+..|.||+++++......+++++.+.++++.|.+....+ .++..+..... .
T Consensus 350 d~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~ 429 (720)
T 2zj8_A 350 SDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYST 429 (720)
T ss_dssp CSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCS
T ss_pred cCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCC
Confidence 9655679999999999999999999889999999977643445667888999999998865333 34444332221 1
Q ss_pred -hhHHHHHHhhHHHHHhh
Q 002183 524 -FTAEHVIKNSFHQFQYE 540 (955)
Q Consensus 524 -~~~~~~l~~sf~~~~~~ 540 (955)
.++.+++..+|...+..
T Consensus 430 ~~d~~~~l~~~~~~~~~~ 447 (720)
T 2zj8_A 430 VEEILKFISNTFYAYQRK 447 (720)
T ss_dssp HHHHHHHHHTSHHHHHCS
T ss_pred HHHHHHHHHhChHHHhcc
Confidence 13667788888876643
No 8
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=3e-48 Score=476.46 Aligned_cols=414 Identities=28% Similarity=0.418 Sum_probs=315.8
Q ss_pred hhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhc--
Q 002183 67 GEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEF-- 143 (955)
Q Consensus 67 ~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~-- 143 (955)
....+.+||. |+|+|.++++.+.++++++++||||||||++|.++++..+.++.+++|++|+++|++|++++++.+.
T Consensus 15 ~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 94 (702)
T 2p6r_A 15 VGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKI 94 (702)
T ss_dssp HHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTT
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhc
Confidence 3444568995 9999999999999999999999999999999999999998889999999999999999999995432
Q ss_pred C-CeeEEecccccCC----CCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC---CCcce
Q 002183 144 K-DVGLMTGDVTLSP----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIK 215 (955)
Q Consensus 144 ~-~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l---~~~~~ 215 (955)
+ .++.++|+..... +++|+|+|||+|..++.+....++++++||+||||.+.+++||..++.++..+ .++.|
T Consensus 95 g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ 174 (702)
T 2p6r_A 95 GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALR 174 (702)
T ss_dssp TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCE
T ss_pred CCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCce
Confidence 2 7899999887554 68999999999999998877778999999999999999999999999887665 57899
Q ss_pred EEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCC
Q 002183 216 MVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGR 295 (955)
Q Consensus 216 ~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 295 (955)
+|+||||++|..++++|++ +.++..+.||+|+...++..+ .............
T Consensus 175 ii~lSATl~n~~~~~~~l~------~~~~~~~~r~~~l~~~~~~~~--~~~~~~~~~~~~~------------------- 227 (702)
T 2p6r_A 175 VIGLSATAPNVTEIAEWLD------ADYYVSDWRPVPLVEGVLCEG--TLELFDGAFSTSR------------------- 227 (702)
T ss_dssp EEEEECCCTTHHHHHHHTT------CEEEECCCCSSCEEEEEECSS--EEEEEETTEEEEE-------------------
T ss_pred EEEECCCcCCHHHHHHHhC------CCcccCCCCCccceEEEeeCC--eeeccCcchhhhh-------------------
Confidence 9999999999999999986 456788899999987654321 1111110000000
Q ss_pred ccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccC--C-CCCHHHHHHHHHHHHHHHh
Q 002183 296 RENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKL--D-FNTQEEKDTVEQVFQNAVD 372 (955)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~--~-~~~~~e~~~i~~~~~~~~~ 372 (955)
......++..... ..+++||||++++.|+.++..|... . +.... .. +...
T Consensus 228 ------------------~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~---~~----~~i~- 280 (702)
T 2p6r_A 228 ------------------RVKFEELVEECVA-ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEG---LE----KAIL- 280 (702)
T ss_dssp ------------------ECCHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSS---HH----HHHH-
T ss_pred ------------------hhhHHHHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHH---HH----HHHH-
Confidence 0002223322222 4579999999999999999998652 1 11111 00 0000
Q ss_pred hcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCC
Q 002183 373 CLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH 452 (955)
Q Consensus 373 ~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~ 452 (955)
. .........+..++..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||.+...||+. .
T Consensus 281 --~--~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~-~ 355 (702)
T 2p6r_A 281 --E--ENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY-S 355 (702)
T ss_dssp --T--TCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSS-E
T ss_pred --h--hccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCC-C
Confidence 0 1112234567778889999999999999999999999999999999999999999999999999888889943 5
Q ss_pred cccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCCCcccccccCcHH---HHHHhhhcccc-h-hhHH
Q 002183 453 RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYY---SILNLMSRAEG-Q-FTAE 527 (955)
Q Consensus 453 ~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s~f~~~~~---~il~ll~~~~~-~-~~~~ 527 (955)
.|.+..+|.||+|||||.|.+..|.|++++++......+++++.+.++++.|.+..... .++.++....+ + .+..
T Consensus 356 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~ 435 (702)
T 2p6r_A 356 KRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELE 435 (702)
T ss_dssp EECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHH
T ss_pred CcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999889999999987643334556788899999998865322 34444333212 1 1355
Q ss_pred HHHHhhHHHHHh
Q 002183 528 HVIKNSFHQFQY 539 (955)
Q Consensus 528 ~~l~~sf~~~~~ 539 (955)
+++..+|...+.
T Consensus 436 ~~l~~t~~~~~~ 447 (702)
T 2p6r_A 436 DFFADTFFFKQN 447 (702)
T ss_dssp HHHHTSTTHHHH
T ss_pred HHHHhhhHHHhh
Confidence 667777765543
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=9.6e-46 Score=428.40 Aligned_cols=339 Identities=19% Similarity=0.274 Sum_probs=268.6
Q ss_pred CCCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc--------CCeEEEEccChhhH
Q 002183 62 NPVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD--------KQRVIYTSPLKALS 132 (955)
Q Consensus 62 ~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~--------~~~vl~l~PtkaLa 132 (955)
++..........||. |+|+|++||+.+.+|++++++||||||||++|++|++..+.. +.++||++||++|+
T Consensus 63 l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa 142 (434)
T 2db3_A 63 LRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELA 142 (434)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHH
Confidence 344444455668998 999999999999999999999999999999999999887742 56899999999999
Q ss_pred HHHHHHHHHhcC----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChH
Q 002183 133 NQKYRELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGV 201 (955)
Q Consensus 133 ~Q~~~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~ 201 (955)
.|++++++++.. .++.++|+... ..+++|+|+||++|.+++.++...+.++++||+||||++.+++++.
T Consensus 143 ~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~ 222 (434)
T 2db3_A 143 IQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSE 222 (434)
T ss_dssp HHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHH
T ss_pred HHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHH
Confidence 999999998765 57788888753 4578999999999999999888789999999999999999999999
Q ss_pred HHHHHHHhC--CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCc--ccceEEEeecCCCceEEeecccchhch
Q 002183 202 VWEESIIFL--PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP--TPLQHYVFPVGGSGLYLVVDEKEQFRE 277 (955)
Q Consensus 202 ~~~~ii~~l--~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~ 277 (955)
.+..++..+ ++..|++++|||+++. +.++.......+..+....... ..+.+.++ .+..
T Consensus 223 ~~~~i~~~~~~~~~~q~l~~SAT~~~~--~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~---------~~~~------ 285 (434)
T 2db3_A 223 DMRRIMTHVTMRPEHQTLMFSATFPEE--IQRMAGEFLKNYVFVAIGIVGGACSDVKQTIY---------EVNK------ 285 (434)
T ss_dssp HHHHHHHCTTSCSSCEEEEEESCCCHH--HHHHHHTTCSSCEEEEESSTTCCCTTEEEEEE---------ECCG------
T ss_pred HHHHHHHhcCCCCCceEEEEeccCCHH--HHHHHHHhccCCEEEEeccccccccccceEEE---------EeCc------
Confidence 999998874 6789999999999854 4566666655555544332221 11222111 1111
Q ss_pred hhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCH
Q 002183 278 DNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQ 357 (955)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~ 357 (955)
......+++.+.... .++||||++++.|+.++..|...++.
T Consensus 286 ------------------------------------~~k~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~~~~-- 326 (434)
T 2db3_A 286 ------------------------------------YAKRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEKEFP-- 326 (434)
T ss_dssp ------------------------------------GGHHHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHTTCC--
T ss_pred ------------------------------------HHHHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhCCCC--
Confidence 112234455555444 45999999999999999999875543
Q ss_pred HHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCc
Q 002183 358 EEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAK 437 (955)
Q Consensus 358 ~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~ 437 (955)
+..+||++++.+|+.+++.|++|..+|||||+++++|||+|++
T Consensus 327 -------------------------------------~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v 369 (434)
T 2db3_A 327 -------------------------------------TTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNI 369 (434)
T ss_dssp -------------------------------------EEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTC
T ss_pred -------------------------------------EEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccC
Confidence 7899999999999999999999999999999999999999999
Q ss_pred EEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc---ccHHHHHHhHhCCCCccc
Q 002183 438 TVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ---MEMNTLKDMVLGKPAPLV 503 (955)
Q Consensus 438 ~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~---~~~~~~~~l~~~~~~~l~ 503 (955)
++|| +||. |.++.+|+||+|||||.|.. |.+++++++. .-...+.+++.....+++
T Consensus 370 ~~VI----~~d~----p~~~~~y~qriGR~gR~g~~--G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp 428 (434)
T 2db3_A 370 KHVI----NYDM----PSKIDDYVHRIGRTGRVGNN--GRATSFFDPEKDRAIAADLVKILEGSGQTVP 428 (434)
T ss_dssp CEEE----ESSC----CSSHHHHHHHHTTSSCTTCC--EEEEEEECTTTCGGGHHHHHHHHHHTTCCCC
T ss_pred CEEE----EECC----CCCHHHHHHHhcccccCCCC--CEEEEEEeccccHHHHHHHHHHHHHcCCCCC
Confidence 9999 8898 89999999999999999985 6666666532 234455566555444444
No 10
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=7.5e-44 Score=410.35 Aligned_cols=339 Identities=17% Similarity=0.276 Sum_probs=265.6
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh---cCCeEEEEccChhhHHHHHHH
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~---~~~~vl~l~PtkaLa~Q~~~~ 138 (955)
+.........+||. |+|+|.++++.+.+|++++++||||+|||++|+++++..+. .+.++||++|+++|+.|++++
T Consensus 45 ~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 124 (410)
T 2j0s_A 45 REDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKG 124 (410)
T ss_dssp CHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHH
Confidence 33344445668998 99999999999999999999999999999999999998774 468999999999999999999
Q ss_pred HHHhcC----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHH
Q 002183 139 LHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (955)
Q Consensus 139 l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii 207 (955)
+..++. .++.++|+... ...++|+|+||++|.+++.++...+.++++||+||||++.++++...+..++
T Consensus 125 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~ 204 (410)
T 2j0s_A 125 LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVY 204 (410)
T ss_dssp HHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHH
T ss_pred HHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHH
Confidence 998765 56677787643 2367999999999999998887778899999999999999999999999999
Q ss_pred HhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCC--cccceEEEeecCCCceEEeecccchhchhhHHHHHH
Q 002183 208 IFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR--PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQD 285 (955)
Q Consensus 208 ~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (955)
..+++..|++++|||+++. +.+++......+..+...... +..+.++. ..+...
T Consensus 205 ~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~------------- 260 (410)
T 2j0s_A 205 RYLPPATQVVLISATLPHE--ILEMTNKFMTDPIRILVKRDELTLEGIKQFF---------VAVERE------------- 260 (410)
T ss_dssp TTSCTTCEEEEEESCCCHH--HHTTGGGTCSSCEEECCCGGGCSCTTEEEEE---------EEESST-------------
T ss_pred HhCccCceEEEEEcCCCHH--HHHHHHHHcCCCEEEEecCccccCCCceEEE---------EEeCcH-------------
Confidence 9999999999999999853 445555555555544332211 11111111 111110
Q ss_pred HHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHH
Q 002183 286 TFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQ 365 (955)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~ 365 (955)
......+...+......++||||++++.|+.++..|...++.
T Consensus 261 ----------------------------~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~---------- 302 (410)
T 2j0s_A 261 ----------------------------EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFT---------- 302 (410)
T ss_dssp ----------------------------THHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCC----------
T ss_pred ----------------------------HhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCc----------
Confidence 011223444444445679999999999999999999775443
Q ss_pred HHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecce
Q 002183 366 VFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK 445 (955)
Q Consensus 366 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~ 445 (955)
+..+||++++.+|+.+++.|++|.++|||||+++++|+|+|++++||
T Consensus 303 -----------------------------~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi---- 349 (410)
T 2j0s_A 303 -----------------------------VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII---- 349 (410)
T ss_dssp -----------------------------CEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEE----
T ss_pred -----------------------------eEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEE----
Confidence 78999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc--ccHHHHHHhHhCCCCcc
Q 002183 446 KWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ--MEMNTLKDMVLGKPAPL 502 (955)
Q Consensus 446 ~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~--~~~~~~~~l~~~~~~~l 502 (955)
.||. |.++..|+||+|||||.|+. |.+++++++. .....+.+......+++
T Consensus 350 ~~~~----p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (410)
T 2j0s_A 350 NYDL----PNNRELYIHRIGRSGRYGRK--GVAINFVKNDDIRILRDIEQYYSTQIDEM 402 (410)
T ss_dssp ESSC----CSSHHHHHHHHTTSSGGGCC--EEEEEEEEGGGHHHHHHHHHHTTCCCEEC
T ss_pred EECC----CCCHHHHHHhcccccCCCCc--eEEEEEecHHHHHHHHHHHHHhCCCceec
Confidence 7888 89999999999999999984 6777766544 22334445455444443
No 11
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.1e-43 Score=405.98 Aligned_cols=319 Identities=18% Similarity=0.213 Sum_probs=248.3
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---------------------CCeE
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---------------------KQRV 122 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---------------------~~~v 122 (955)
.........+|. |+|+|.++++.+..|++++++||||||||++|++|++..+.. ++++
T Consensus 25 ~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (417)
T 2i4i_A 25 IIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPIS 104 (417)
T ss_dssp HHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSE
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccE
Confidence 444445567886 999999999999999999999999999999999999877632 2579
Q ss_pred EEEccChhhHHHHHHHHHHhcC----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEcc
Q 002183 123 IYTSPLKALSNQKYRELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEI 191 (955)
Q Consensus 123 l~l~PtkaLa~Q~~~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEa 191 (955)
||++||++|++|+++++++++. .++.++|+... ..+++|+|+||++|.+++..+...+.++++||+|||
T Consensus 105 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEa 184 (417)
T 2i4i_A 105 LVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEA 184 (417)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSH
T ss_pred EEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEECh
Confidence 9999999999999999998764 56778887643 457899999999999999888777899999999999
Q ss_pred ccCCCCCChHHHHHHHHh--CCC--cceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCc--ccceEEEeecCCCce
Q 002183 192 HYMKDRERGVVWEESIIF--LPP--AIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP--TPLQHYVFPVGGSGL 265 (955)
Q Consensus 192 H~l~d~~rg~~~~~ii~~--l~~--~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp--~pl~~~~~~~~~~~~ 265 (955)
|++.+++++..+..++.. +++ ..|++++|||+++. +..++......+..+....... ..+.+...
T Consensus 185 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------- 255 (417)
T 2i4i_A 185 DRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKE--IQMLARDFLDEYIFLAVGRVGSTSENITQKVV------- 255 (417)
T ss_dssp HHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHH--HHHHHHHHCSSCEEEEEC----CCSSEEEEEE-------
T ss_pred hHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHH--HHHHHHHHcCCCEEEEeCCCCCCccCceEEEE-------
Confidence 999998899998888774 333 68999999999854 3345544444454443322211 11121111
Q ss_pred EEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHc-CCCcEEEEEcChHHHHH
Q 002183 266 YLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER-KFQPVIVFSFSRRECEQ 344 (955)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~IVF~~s~~~~~~ 344 (955)
.+... .....+.+.+... ...++||||++++.|+.
T Consensus 256 --~~~~~------------------------------------------~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~ 291 (417)
T 2i4i_A 256 --WVEES------------------------------------------DKRSFLLDLLNATGKDSLTLVFVETKKGADS 291 (417)
T ss_dssp --ECCGG------------------------------------------GHHHHHHHHHHTCCTTCEEEEECSSHHHHHH
T ss_pred --EeccH------------------------------------------hHHHHHHHHHHhcCCCCeEEEEECCHHHHHH
Confidence 11111 0112233333332 45789999999999999
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEE
Q 002183 345 HAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFA 424 (955)
Q Consensus 345 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLva 424 (955)
++..|...++ .+..+||++++.+|..+++.|++|..+||||
T Consensus 292 l~~~L~~~~~---------------------------------------~~~~~h~~~~~~~r~~~~~~f~~g~~~vlva 332 (417)
T 2i4i_A 292 LEDFLYHEGY---------------------------------------ACTSIHGDRSQRDREEALHQFRSGKSPILVA 332 (417)
T ss_dssp HHHHHHHTTC---------------------------------------CEEEECTTSCHHHHHHHHHHHHHTSSCEEEE
T ss_pred HHHHHHHCCC---------------------------------------CeeEecCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 9999976543 3789999999999999999999999999999
Q ss_pred cccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 425 TETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 425 T~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|+++++|+|+|++++|| .||. |.++.+|+||+|||||.|. .|.+++++++.
T Consensus 333 T~~~~~Gidip~v~~Vi----~~~~----p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~ 383 (417)
T 2i4i_A 333 TAVAARGLDISNVKHVI----NFDL----PSDIEEYVHRIGRTGRVGN--LGLATSFFNER 383 (417)
T ss_dssp CHHHHTTSCCCCEEEEE----ESSC----CSSHHHHHHHHTTBCC--C--CEEEEEEECGG
T ss_pred CChhhcCCCcccCCEEE----EEcC----CCCHHHHHHhcCccccCCC--CceEEEEEccc
Confidence 99999999999999999 7888 8999999999999999997 47777777554
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.5e-43 Score=402.44 Aligned_cols=327 Identities=20% Similarity=0.285 Sum_probs=259.2
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh---cCCeEEEEccChhhHHHHHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~---~~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
.........||+ |+|+|.++++.+.+|++++++||||+|||++|+++++..+. .+.+++|++|+++|+.|+++.++
T Consensus 31 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 110 (400)
T 1s2m_A 31 ELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVR 110 (400)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHH
Confidence 333444557898 99999999999999999999999999999999999988875 45689999999999999999999
Q ss_pred HhcC----CeeEEecccc-------cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh
Q 002183 141 QEFK----DVGLMTGDVT-------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (955)
Q Consensus 141 ~~~~----~vg~~tGd~~-------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~ 209 (955)
.++. .++..+|+.. ....++|+|+||++|.+++.+....+.++++||+||||++.+..++..+..++..
T Consensus 111 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~ 190 (400)
T 1s2m_A 111 TLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSF 190 (400)
T ss_dssp HHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTT
T ss_pred HHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHh
Confidence 9875 5677888764 2467899999999999988887777899999999999999988778888888888
Q ss_pred CCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCC-cccceEEEeecCCCceEEeecccchhchhhHHHHHHHHH
Q 002183 210 LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR-PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFL 288 (955)
Q Consensus 210 l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~r-p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 288 (955)
+++..|++++|||++.. +.+++......+..+...... ...+.++. ......
T Consensus 191 ~~~~~~~i~lSAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~---------------- 243 (400)
T 1s2m_A 191 LPPTHQSLLFSATFPLT--VKEFMVKHLHKPYEINLMEELTLKGITQYY---------AFVEER---------------- 243 (400)
T ss_dssp SCSSCEEEEEESCCCHH--HHHHHHHHCSSCEEESCCSSCBCTTEEEEE---------EECCGG----------------
T ss_pred CCcCceEEEEEecCCHH--HHHHHHHHcCCCeEEEeccccccCCceeEE---------EEechh----------------
Confidence 88899999999999843 556776665555443322211 11112111 111111
Q ss_pred HhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Q 002183 289 KQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368 (955)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~ 368 (955)
.....+...+......++||||++++.++.++..|...++
T Consensus 244 --------------------------~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-------------- 283 (400)
T 1s2m_A 244 --------------------------QKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGY-------------- 283 (400)
T ss_dssp --------------------------GHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTC--------------
T ss_pred --------------------------hHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCC--------------
Confidence 1122333344444567999999999999999999876332
Q ss_pred HHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceecc
Q 002183 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448 (955)
Q Consensus 369 ~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d 448 (955)
++..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++|| .||
T Consensus 284 -------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi----~~~ 334 (400)
T 1s2m_A 284 -------------------------SCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI----NFD 334 (400)
T ss_dssp -------------------------CEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE----ESS
T ss_pred -------------------------CeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE----EeC
Confidence 378999999999999999999999999999999999999999999999 788
Q ss_pred CCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHh
Q 002183 449 GDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDM 494 (955)
Q Consensus 449 ~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l 494 (955)
. |.++.+|+||+|||||.|+ .|.|++++++. +...++++
T Consensus 335 ~----p~s~~~~~Qr~GR~gR~g~--~g~~~~l~~~~-~~~~~~~i 373 (400)
T 1s2m_A 335 F----PKTAETYLHRIGRSGRFGH--LGLAINLINWN-DRFNLYKI 373 (400)
T ss_dssp C----CSSHHHHHHHHCBSSCTTC--CEEEEEEECGG-GHHHHHHH
T ss_pred C----CCCHHHHHHhcchhcCCCC--CceEEEEeccc-hHHHHHHH
Confidence 8 8999999999999999997 47777777655 33334433
No 13
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-43 Score=408.67 Aligned_cols=320 Identities=20% Similarity=0.261 Sum_probs=244.3
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh---cCCeEEEEccChhhHHHHHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~---~~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
........++|. |+++|.++++.+.+|++++++||||||||++|.++++..+. .+.+++|++|+++|+.|+++.++
T Consensus 50 ~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 129 (414)
T 3eiq_A 50 SLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVM 129 (414)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHH
Confidence 344445568887 99999999999999999999999999999999999998875 46789999999999999999999
Q ss_pred HhcC----CeeEEeccccc--------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHH
Q 002183 141 QEFK----DVGLMTGDVTL--------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208 (955)
Q Consensus 141 ~~~~----~vg~~tGd~~~--------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~ 208 (955)
.++. .++..+|+... ...++|+|+||++|.+++.++...+.++++||+||||++.+++++..+..++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 209 (414)
T 3eiq_A 130 ALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 209 (414)
T ss_dssp HHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHT
T ss_pred HHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHH
Confidence 9764 55666676543 25789999999999999988877788999999999999999899999999999
Q ss_pred hCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcc--cceEEEeecCCCceEEeecccchhchhhHHHHHHH
Q 002183 209 FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT--PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDT 286 (955)
Q Consensus 209 ~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (955)
.++++.|+++||||+++. ...++......+..+........ .+.++. ......
T Consensus 210 ~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-------------- 264 (414)
T 3eiq_A 210 KLNSNTQVVLLSATMPSD--VLEVTKKFMRDPIRILVKKEELTLEGIRQFY---------INVERE-------------- 264 (414)
T ss_dssp TSCTTCEEEEECSCCCHH--HHHHHTTTCSSCEEECCCCCCCCTTSCCEEE---------EECSSS--------------
T ss_pred hCCCCCeEEEEEEecCHH--HHHHHHHHcCCCEEEEecCCccCCCCceEEE---------EEeChH--------------
Confidence 999999999999999843 44566655555554433222111 111111 111100
Q ss_pred HHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 002183 287 FLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366 (955)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~ 366 (955)
......+...+......++||||++++.|+.++..|...++.
T Consensus 265 ---------------------------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~----------- 306 (414)
T 3eiq_A 265 ---------------------------EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFT----------- 306 (414)
T ss_dssp ---------------------------TTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCC-----------
T ss_pred ---------------------------HhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCe-----------
Confidence 112334445555556679999999999999999999875443
Q ss_pred HHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEeccee
Q 002183 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446 (955)
Q Consensus 367 ~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~ 446 (955)
+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++|| .
T Consensus 307 ----------------------------~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi----~ 354 (414)
T 3eiq_A 307 ----------------------------VSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI----N 354 (414)
T ss_dssp ----------------------------CEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE----E
T ss_pred ----------------------------EEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE----E
Confidence 78999999999999999999999999999999999999999999999 7
Q ss_pred ccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 447 WDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 447 ~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
||. |.++.+|+||+|||||.|++ |.+++++++.
T Consensus 355 ~~~----p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 387 (414)
T 3eiq_A 355 YDL----PTNRENYIHRIGRGGRFGRK--GVAINMVTEE 387 (414)
T ss_dssp SSC----CSSTHHHHHHSCCC---------CEEEEECST
T ss_pred eCC----CCCHHHhhhhcCcccCCCCC--ceEEEEEcHH
Confidence 888 88999999999999999985 6666666554
No 14
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.8e-42 Score=394.44 Aligned_cols=328 Identities=21% Similarity=0.261 Sum_probs=258.1
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
........+||+ |+|+|.++++.+..|++++++||||+|||++|+++++..+.. +.++||++|+++|++|+++++.
T Consensus 18 ~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~ 97 (391)
T 1xti_A 18 ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYE 97 (391)
T ss_dssp HHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHH
Confidence 344445567998 999999999999999999999999999999999999888653 5689999999999999999998
Q ss_pred HhcC-----CeeEEecccccC--------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCC-CChHHHHHH
Q 002183 141 QEFK-----DVGLMTGDVTLS--------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR-ERGVVWEES 206 (955)
Q Consensus 141 ~~~~-----~vg~~tGd~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~-~rg~~~~~i 206 (955)
++.. .++.++|+.... ..++|+|+||+++.+++.+....+.++++||+||||++.++ ++...+..+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~ 177 (391)
T 1xti_A 98 RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEI 177 (391)
T ss_dssp HHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHH
T ss_pred HHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHH
Confidence 8742 678888886532 34799999999999998887777899999999999999874 555667777
Q ss_pred HHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCc---ccceEEEeecCCCceEEeecccchhchhhHHHH
Q 002183 207 IIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRP---TPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKL 283 (955)
Q Consensus 207 i~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp---~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (955)
+..+++..|++++|||+++.. ...+......+..+....... ..+.++.. ....
T Consensus 178 ~~~~~~~~~~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~------------ 234 (391)
T 1xti_A 178 FRMTPHEKQVMMFSATLSKEI--RPVCRKFMQDPMEIFVDDETKLTLHGLQQYYV---------KLKD------------ 234 (391)
T ss_dssp HHTSCSSSEEEEEESSCCSTH--HHHHHHHCSSCEEEECCCCCCCCCTTCEEEEE---------ECCG------------
T ss_pred HhhCCCCceEEEEEeeCCHHH--HHHHHHHcCCCeEEEecCccccCcccceEEEE---------EcCc------------
Confidence 778888999999999998652 244444445555554333211 11122111 1111
Q ss_pred HHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHH
Q 002183 284 QDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV 363 (955)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i 363 (955)
......+...+......++||||++++.|+.++..|...++.
T Consensus 235 ------------------------------~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~-------- 276 (391)
T 1xti_A 235 ------------------------------NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFP-------- 276 (391)
T ss_dssp ------------------------------GGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCC--------
T ss_pred ------------------------------hhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCc--------
Confidence 111223444445556689999999999999999999775443
Q ss_pred HHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEec
Q 002183 364 EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443 (955)
Q Consensus 364 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~ 443 (955)
+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 277 -------------------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi-- 323 (391)
T 1xti_A 277 -------------------------------AIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF-- 323 (391)
T ss_dssp -------------------------------EEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEE--
T ss_pred -------------------------------EEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEE--
Confidence 68899999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHh
Q 002183 444 VKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDM 494 (955)
Q Consensus 444 ~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l 494 (955)
.||. |.++.+|+||+|||||.|. .|.+++++++..+...+..+
T Consensus 324 --~~~~----p~s~~~~~Qr~GR~~R~g~--~g~~~~~~~~~~~~~~~~~~ 366 (391)
T 1xti_A 324 --NYDM----PEDSDTYLHRVARAGRFGT--KGLAITFVSDENDAKILNDV 366 (391)
T ss_dssp --ESSC----CSSHHHHHHHHCBCSSSCC--CCEEEEEECSHHHHHHHHHH
T ss_pred --EeCC----CCCHHHHHHhcccccCCCC--ceEEEEEEcccchHHHHHHH
Confidence 7888 8899999999999999997 57777777665444433333
No 15
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.8e-42 Score=392.65 Aligned_cols=332 Identities=18% Similarity=0.268 Sum_probs=250.9
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcC--CcEEEEcCCCCchHHHHHHHHHHHHh---cCCeEEEEccChhhHHHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~~~i~~~l~---~~~~vl~l~PtkaLa~Q~~~~ 138 (955)
........++|. |+|+|.++++.+..+ ++++++||||+|||++|.++++..+. .+.++||++|+++|++|+++.
T Consensus 15 ~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 94 (395)
T 3pey_A 15 ELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEV 94 (395)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHH
Confidence 334444557887 999999999999887 99999999999999999999988875 467899999999999999999
Q ss_pred HHHhcC----CeeEEeccccc---CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCC-CCChHHHHHHHHhC
Q 002183 139 LHQEFK----DVGLMTGDVTL---SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD-RERGVVWEESIIFL 210 (955)
Q Consensus 139 l~~~~~----~vg~~tGd~~~---~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d-~~rg~~~~~ii~~l 210 (955)
+++++. .++..+|+... ..+++|+|+||+++.+++.+....+.++++||+||||++.+ .++...+..+...+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~ 174 (395)
T 3pey_A 95 VQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFL 174 (395)
T ss_dssp HHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTS
T ss_pred HHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhC
Confidence 999765 45556665432 23689999999999999988777789999999999999876 56777788888888
Q ss_pred CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecC--CCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHH
Q 002183 211 PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTD--FRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFL 288 (955)
Q Consensus 211 ~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~--~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 288 (955)
+++.|++++|||+++. +..+.......+..+.... .....+.+... .....
T Consensus 175 ~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---------------- 227 (395)
T 3pey_A 175 PKDTQLVLFSATFADA--VRQYAKKIVPNANTLELQTNEVNVDAIKQLYM---------DCKNE---------------- 227 (395)
T ss_dssp CTTCEEEEEESCCCHH--HHHHHHHHSCSCEEECCCGGGCSCTTEEEEEE---------ECSSH----------------
T ss_pred CCCcEEEEEEecCCHH--HHHHHHHhCCCCeEEEccccccccccccEEEE---------EcCch----------------
Confidence 9999999999999854 3344444444333332211 11111111111 11100
Q ss_pred HhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Q 002183 289 KQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQ 368 (955)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~ 368 (955)
......+...+......++||||++++.|+.++..|...++.
T Consensus 228 -------------------------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~------------- 269 (395)
T 3pey_A 228 -------------------------ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHE------------- 269 (395)
T ss_dssp -------------------------HHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCC-------------
T ss_pred -------------------------HHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCc-------------
Confidence 000112222222334578999999999999999999875443
Q ss_pred HHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceecc
Q 002183 369 NAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWD 448 (955)
Q Consensus 369 ~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d 448 (955)
+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++|| .||
T Consensus 270 --------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi----~~~ 319 (395)
T 3pey_A 270 --------------------------VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVV----NYD 319 (395)
T ss_dssp --------------------------CEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEE----ESS
T ss_pred --------------------------EEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEE----EcC
Confidence 78999999999999999999999999999999999999999999999 677
Q ss_pred CCC--CcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHH
Q 002183 449 GDS--HRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKD 493 (955)
Q Consensus 449 ~~~--~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~ 493 (955)
... ..+.++.+|+||+|||||.|. .|.+++++++..+...+..
T Consensus 320 ~p~~~~~~~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~~~~~~~~~ 364 (395)
T 3pey_A 320 LPTLANGQADPATYIHRIGRTGRFGR--KGVAISFVHDKNSFNILSA 364 (395)
T ss_dssp CCBCTTSSBCHHHHHHHHTTSSCTTC--CEEEEEEECSHHHHHHHHH
T ss_pred CCCCCcCCCCHHHhhHhccccccCCC--CceEEEEEechHHHHHHHH
Confidence 621 112399999999999999997 5778877766544433333
No 16
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.5e-42 Score=395.41 Aligned_cols=333 Identities=18% Similarity=0.228 Sum_probs=252.9
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcC--CcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHH
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKY 136 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~ 136 (955)
+.........+||. |+|+|.++++.+..+ ++++++||||+|||++|++|++..+.. +.++||++|+++|+.|++
T Consensus 33 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 112 (412)
T 3fht_A 33 KPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTG 112 (412)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHH
Confidence 33344445567887 999999999999887 999999999999999999999988754 458999999999999999
Q ss_pred HHHHHhcC-----CeeEEecccccCC----CCCEEEEeHHHHHHHHhc-CCccCCccceEEEEccccCCC-CCChHHHHH
Q 002183 137 RELHQEFK-----DVGLMTGDVTLSP----NASCLVMTTEILRGMLYR-GSEVLKEVAWVIFDEIHYMKD-RERGVVWEE 205 (955)
Q Consensus 137 ~~l~~~~~-----~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~-~~~~l~~l~~vIiDEaH~l~d-~~rg~~~~~ 205 (955)
+.+.++.. .++...|+..... .++|+|+||+++.+++.+ +...+.++++||+||||++.+ ..+...+..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 192 (412)
T 3fht_A 113 KVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIR 192 (412)
T ss_dssp HHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHH
T ss_pred HHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHH
Confidence 98888653 5666777665433 579999999999998865 445578999999999999876 667777888
Q ss_pred HHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCC--cccceEEEeecCCCceEEeecccchhchhhHHHH
Q 002183 206 SIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR--PTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKL 283 (955)
Q Consensus 206 ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (955)
+...++++.|++++|||+++. ...+.......+..+...... ...+.++.. .....
T Consensus 193 ~~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~----------- 250 (412)
T 3fht_A 193 IQRMLPRNCQMLLFSATFEDS--VWKFAQKVVPDPNVIKLKREEETLDTIKQYYV---------LCSSR----------- 250 (412)
T ss_dssp HHHTSCTTCEEEEEESCCCHH--HHHHHHHHSSSCEEECCCGGGSSCTTEEEEEE---------ECSSH-----------
T ss_pred HHhhCCCCceEEEEEeecCHH--HHHHHHHhcCCCeEEeeccccccccCceEEEE---------EcCCh-----------
Confidence 888889999999999999854 334444444444433322211 111222111 11100
Q ss_pred HHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHH
Q 002183 284 QDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV 363 (955)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i 363 (955)
......+...+......++||||++++.|+.++..|...+.
T Consensus 251 ------------------------------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~--------- 291 (412)
T 3fht_A 251 ------------------------------DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGH--------- 291 (412)
T ss_dssp ------------------------------HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTC---------
T ss_pred ------------------------------HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCC---------
Confidence 01122344444455667999999999999999999987543
Q ss_pred HHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEec
Q 002183 364 EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443 (955)
Q Consensus 364 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~ 443 (955)
++..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||
T Consensus 292 ------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi-- 339 (412)
T 3fht_A 292 ------------------------------QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI-- 339 (412)
T ss_dssp ------------------------------CCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEE--
T ss_pred ------------------------------eEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEE--
Confidence 378999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCc--ccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHH
Q 002183 444 VKKWDGDSHR--YIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLK 492 (955)
Q Consensus 444 ~~~~d~~~~~--~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~ 492 (955)
.||..... ..+..+|+||+|||||.|. .|.+++++++..+...++
T Consensus 340 --~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~~~~~~~~ 386 (412)
T 3fht_A 340 --NFDLPVDKDGNPDNETYLHRIGRTGRFGK--RGLAVNMVDSKHSMNILN 386 (412)
T ss_dssp --ESSCCBCSSSSBCHHHHHHHHTTSSCTTC--CEEEEEEECSHHHHHHHH
T ss_pred --EECCCCCCCCCcchheeecccCcccCCCC--CceEEEEEcChhhHHHHH
Confidence 67762111 1578999999999999997 578888887654333333
No 17
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.1e-42 Score=414.91 Aligned_cols=341 Identities=16% Similarity=0.184 Sum_probs=251.7
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHh--cCCcEEEEcCCCCchHHHHHHHHHHHHhcC-------CeEEEEccChhhH
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLE--RNESVLVSAHTSAGKTAVAEYAIAMAFRDK-------QRVIYTSPLKALS 132 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~--~g~~vlv~apTGsGKTl~~~~~i~~~l~~~-------~~vl~l~PtkaLa 132 (955)
+.........+||. |+|+|.++++.+. .+++++++||||||||++|++|++..+..+ .++||++||++|+
T Consensus 80 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La 159 (563)
T 3i5x_A 80 DKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLA 159 (563)
T ss_dssp CHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHH
Confidence 33444445667998 9999999999988 678999999999999999999999888543 4899999999999
Q ss_pred HHHHHHHHHhcC--------CeeEEeccccc--------CCCCCEEEEeHHHHHHHHhcC-CccCCccceEEEEccccCC
Q 002183 133 NQKYRELHQEFK--------DVGLMTGDVTL--------SPNASCLVMTTEILRGMLYRG-SEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 133 ~Q~~~~l~~~~~--------~vg~~tGd~~~--------~~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~~vIiDEaH~l~ 195 (955)
.|++++++.++. .+..++|+... ...++|+|+||++|.+++.+. ...++++++||+||||++.
T Consensus 160 ~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~ 239 (563)
T 3i5x_A 160 LQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLL 239 (563)
T ss_dssp HHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHT
T ss_pred HHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHh
Confidence 999999998632 35667776642 236899999999999888764 3357889999999999999
Q ss_pred CCCChHHHHHHHHhC-------CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCC-C--cccceEEEeecCCCce
Q 002183 196 DRERGVVWEESIIFL-------PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDF-R--PTPLQHYVFPVGGSGL 265 (955)
Q Consensus 196 d~~rg~~~~~ii~~l-------~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~-r--p~pl~~~~~~~~~~~~ 265 (955)
+++|+..++.++..+ ++++|+++||||+++.. ...+......+..+..... . +....... ..
T Consensus 240 ~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 311 (563)
T 3i5x_A 240 EIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKV--QKLANNIMNKKECLFLDTVDKNEPEAHERID------QS 311 (563)
T ss_dssp STTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHH--HHHTTTTCCSSEEEEEESSCSSSCSSCTTEE------EE
T ss_pred ccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHH--HHHHHHhcCCCceEEEeccCCCCccccccCc------eE
Confidence 999999999887665 34789999999999752 2444444444444332211 1 11110000 01
Q ss_pred EEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHH-cCCCcEEEEEcChHHHHH
Q 002183 266 YLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME-RKFQPVIVFSFSRRECEQ 344 (955)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~IVF~~s~~~~~~ 344 (955)
+........ .... .+..+...+.. ....++||||+|++.|+.
T Consensus 312 ~~~~~~~~~----~~~~---------------------------------~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~ 354 (563)
T 3i5x_A 312 VVISEKFAN----SIFA---------------------------------AVEHIKKQIKERDSNYKAIIFAPTVKFTSF 354 (563)
T ss_dssp EEEESSTTH----HHHH---------------------------------HHHHHHHHHHHTTTCCEEEEECSCHHHHHH
T ss_pred EEECchhHh----hHHH---------------------------------HHHHHHHHHhhcCCCCcEEEEcCcHHHHHH
Confidence 111111000 0000 01122233332 345799999999999999
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEE
Q 002183 345 HAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFA 424 (955)
Q Consensus 345 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLva 424 (955)
++..|..... -...+..|||+|++.+|+.+++.|++|.++||||
T Consensus 355 l~~~L~~~~~------------------------------------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 355 LCSILKNEFK------------------------------------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp HHHHHHHHHT------------------------------------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHhcc------------------------------------CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 9999875200 0124788999999999999999999999999999
Q ss_pred cccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhH
Q 002183 425 TETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMV 495 (955)
Q Consensus 425 T~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~ 495 (955)
|+++++|||+|++++|| +||. |.++.+|+||+|||||.|.. |.+++++.+. +...++.+.
T Consensus 399 T~~~~~GiDip~v~~VI----~~~~----p~s~~~y~Qr~GRagR~g~~--g~~i~~~~~~-e~~~~~~l~ 458 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVL----QIGV----PSELANYIHRIGRTARSGKE--GSSVLFICKD-ELPFVRELE 458 (563)
T ss_dssp CGGGTSSCCCTTCCEEE----EESC----CSSTTHHHHHHTTSSCTTCC--EEEEEEEEGG-GHHHHHHHH
T ss_pred cchhhcCCCcccCCEEE----EECC----CCchhhhhhhcCccccCCCC--ceEEEEEchh-HHHHHHHHH
Confidence 99999999999999999 8888 88999999999999999974 6666666544 445555554
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.2e-42 Score=388.29 Aligned_cols=317 Identities=19% Similarity=0.243 Sum_probs=250.3
Q ss_pred CCchhhhhcCCCC-CCHHHHHHHHHHhcC-CcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccChhhHHHHHHHH
Q 002183 64 VYNGEMAKTYSFE-LDPFQRVSVACLERN-ESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 64 ~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g-~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~PtkaLa~Q~~~~l 139 (955)
..........||. |+|+|.++++.+.++ ++++++||||+|||++|.++++..+.. +.+++|++|+++|+.|+++++
T Consensus 15 ~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 94 (367)
T 1hv8_A 15 DNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEI 94 (367)
T ss_dssp HHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHH
Confidence 3444455567886 999999999998777 799999999999999999999887754 779999999999999999999
Q ss_pred HHhcC----CeeEEecccccC------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh
Q 002183 140 HQEFK----DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (955)
Q Consensus 140 ~~~~~----~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~ 209 (955)
...++ .++.++|+.... .+++|+|+||+++.+.+..+...+.++++||+||||.+.++++...+..++..
T Consensus 95 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~ 174 (367)
T 1hv8_A 95 ESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNA 174 (367)
T ss_dssp HHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHT
T ss_pred HHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHh
Confidence 99876 466677776532 26899999999999998887777899999999999999998888889999989
Q ss_pred CCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHH
Q 002183 210 LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLK 289 (955)
Q Consensus 210 l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 289 (955)
+++..+++++|||+++. ..+++......+..+. ... +..+.+... .....
T Consensus 175 ~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~---------~~~~~----------------- 224 (367)
T 1hv8_A 175 CNKDKRILLFSATMPRE--ILNLAKKYMGDYSFIK-AKI-NANIEQSYV---------EVNEN----------------- 224 (367)
T ss_dssp SCSSCEEEEECSSCCHH--HHHHHHHHCCSEEEEE-CCS-SSSSEEEEE---------ECCGG-----------------
T ss_pred CCCCceEEEEeeccCHH--HHHHHHHHcCCCeEEE-ecC-CCCceEEEE---------EeChH-----------------
Confidence 99999999999999854 3344444443322222 111 112222111 11111
Q ss_pred hhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Q 002183 290 QKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN 369 (955)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~ 369 (955)
..+..+.+.+. ....++||||++++.++.++..|...++
T Consensus 225 -------------------------~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~--------------- 263 (367)
T 1hv8_A 225 -------------------------ERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGF--------------- 263 (367)
T ss_dssp -------------------------GHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTC---------------
T ss_pred -------------------------HHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCC---------------
Confidence 11222333332 4557899999999999999999976543
Q ss_pred HHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccC
Q 002183 370 AVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDG 449 (955)
Q Consensus 370 ~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~ 449 (955)
++..+||++++.+|+.+++.|++|..+|||||+++++|+|+|++++|| .||.
T Consensus 264 ------------------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi----~~~~ 315 (367)
T 1hv8_A 264 ------------------------KAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI----NYHL 315 (367)
T ss_dssp ------------------------CEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE----ESSC
T ss_pred ------------------------CeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE----EecC
Confidence 378999999999999999999999999999999999999999999999 7777
Q ss_pred CCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 450 DSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 450 ~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|.++.+|+||+|||||.|++ |.+++++++.
T Consensus 316 ----~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 345 (367)
T 1hv8_A 316 ----PQNPESYMHRIGRTGRAGKK--GKAISIINRR 345 (367)
T ss_dssp ----CSCHHHHHHHSTTTCCSSSC--CEEEEEECTT
T ss_pred ----CCCHHHhhhcccccccCCCc--cEEEEEEcHH
Confidence 89999999999999999985 5555555443
No 19
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.1e-42 Score=384.44 Aligned_cols=304 Identities=20% Similarity=0.228 Sum_probs=244.3
Q ss_pred hhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC--
Q 002183 68 EMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-- 144 (955)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-- 144 (955)
.....+||. |+|+|+++++.+.+++++++++|||+|||++|.++++.. +.+++|++|+++|++|+++++++++.
T Consensus 7 ~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~ 83 (337)
T 2z0m_A 7 QAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---GMKSLVVTPTRELTRQVASHIRDIGRYM 83 (337)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---cCCEEEEeCCHHHHHHHHHHHHHHhhhc
Confidence 444568988 999999999999999999999999999999999988764 88999999999999999999998764
Q ss_pred --CeeEEecccccC------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceE
Q 002183 145 --DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKM 216 (955)
Q Consensus 145 --~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~ 216 (955)
.++.++|+.... .+++|+|+||++|.+++.++...+.++++||+||||++.++++...+..++..++...++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 163 (337)
T 2z0m_A 84 DTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKIT 163 (337)
T ss_dssp CCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEE
T ss_pred CCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEE
Confidence 677788876432 358999999999999888777778899999999999999988899999999999999999
Q ss_pred EEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCc
Q 002183 217 VFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRR 296 (955)
Q Consensus 217 v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (955)
+++|||+++. ..+++......+..+ ........+.+.... +..
T Consensus 164 ~~~SAT~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~------------------------- 206 (337)
T 2z0m_A 164 GLFSATIPEE--IRKVVKDFITNYEEI-EACIGLANVEHKFVH---------VKD------------------------- 206 (337)
T ss_dssp EEEESCCCHH--HHHHHHHHSCSCEEE-ECSGGGGGEEEEEEE---------CSS-------------------------
T ss_pred EEEeCcCCHH--HHHHHHHhcCCceee-ecccccCCceEEEEE---------eCh-------------------------
Confidence 9999999854 334444444433333 222222222221111 100
Q ss_pred cCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhccc
Q 002183 297 ENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376 (955)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~ 376 (955)
.....+..+......++||||++++.++.++..|..
T Consensus 207 -------------------~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~------------------------- 242 (337)
T 2z0m_A 207 -------------------DWRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFDN------------------------- 242 (337)
T ss_dssp -------------------SSHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCTT-------------------------
T ss_pred -------------------HHHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhhh-------------------------
Confidence 011223344445668999999999999999887752
Q ss_pred ccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccC
Q 002183 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIG 456 (955)
Q Consensus 377 ~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s 456 (955)
+..+||++++.+|..+++.|++|.++|||||+++++|+|+|++++|| .||. |.+
T Consensus 243 ------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi----~~~~----~~s 296 (337)
T 2z0m_A 243 ------------------AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVI----NFDA----PQD 296 (337)
T ss_dssp ------------------EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEE----ESSC----CSS
T ss_pred ------------------hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEE----EecC----CCC
Confidence 67899999999999999999999999999999999999999999999 7887 889
Q ss_pred HHHHHHHhccCCCCCCCCceEEEEEeC
Q 002183 457 SGEYIQMSGRAGRRGKDDRGICIIMVD 483 (955)
Q Consensus 457 ~~ey~Q~~GRaGR~G~~~~g~~ii~~~ 483 (955)
+.+|+||+|||||.|++ |.++++..
T Consensus 297 ~~~~~Q~~GR~gR~g~~--g~~~~~~~ 321 (337)
T 2z0m_A 297 LRTYIHRIGRTGRMGRK--GEAITFIL 321 (337)
T ss_dssp HHHHHHHHTTBCGGGCC--EEEEEEES
T ss_pred HHHhhHhcCccccCCCC--ceEEEEEe
Confidence 99999999999999985 55555554
No 20
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.5e-42 Score=410.17 Aligned_cols=345 Identities=16% Similarity=0.173 Sum_probs=253.4
Q ss_pred CCCCchhhhhcCCCC-CCHHHHHHHHHHh--cCCcEEEEcCCCCchHHHHHHHHHHHHhcC-------CeEEEEccChhh
Q 002183 62 NPVYNGEMAKTYSFE-LDPFQRVSVACLE--RNESVLVSAHTSAGKTAVAEYAIAMAFRDK-------QRVIYTSPLKAL 131 (955)
Q Consensus 62 ~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~--~g~~vlv~apTGsGKTl~~~~~i~~~l~~~-------~~vl~l~PtkaL 131 (955)
++.........+||+ |+|+|.++++.+. .|++++++||||+|||++|++|++..+..+ .++||++||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 344455556678998 9999999999998 788999999999999999999999887543 489999999999
Q ss_pred HHHHHHHHHHhcC--------CeeEEecccccC--------CCCCEEEEeHHHHHHHHhcC-CccCCccceEEEEccccC
Q 002183 132 SNQKYRELHQEFK--------DVGLMTGDVTLS--------PNASCLVMTTEILRGMLYRG-SEVLKEVAWVIFDEIHYM 194 (955)
Q Consensus 132 a~Q~~~~l~~~~~--------~vg~~tGd~~~~--------~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~~vIiDEaH~l 194 (955)
+.|+++++..++. .+..+.|+.... ..++|+|+||++|.+++.+. ...++.+++||+||||++
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 9999999998652 355666765432 26899999999999888764 345788999999999999
Q ss_pred CCCCChHHHHHHHHhCC-------CcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCC-CcccceEEEeecCCCceE
Q 002183 195 KDRERGVVWEESIIFLP-------PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDF-RPTPLQHYVFPVGGSGLY 266 (955)
Q Consensus 195 ~d~~rg~~~~~ii~~l~-------~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~-rp~pl~~~~~~~~~~~~~ 266 (955)
.+++|+..++.++..++ +.+|+++||||+++. +..++......+..+..... ...+.... .....+
T Consensus 188 ~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~--v~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~i~~~~ 261 (579)
T 3sqw_A 188 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDK--VQKLANNIMNKKECLFLDTVDKNEPEAHE----RIDQSV 261 (579)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTH--HHHHTTTTCCSSEEEEEESSCSSSCSSCT----TEEEEE
T ss_pred hcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChH--HHHHHHHHcCCCceEEEeecCcccccccc----ccceEE
Confidence 99999999988876653 378999999999975 23444444444444333221 11110000 000011
Q ss_pred EeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHH-cCCCcEEEEEcChHHHHHH
Q 002183 267 LVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME-RKFQPVIVFSFSRRECEQH 345 (955)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~IVF~~s~~~~~~l 345 (955)
........ ... ..+..+...+.. ....++||||+|+..|+.+
T Consensus 262 ~~~~~~~~----~~~---------------------------------~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l 304 (579)
T 3sqw_A 262 VISEKFAN----SIF---------------------------------AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFL 304 (579)
T ss_dssp EEESSTTH----HHH---------------------------------HHHHHHHHHHHHTTTCCEEEEECSSHHHHHHH
T ss_pred EEecchhh----hHH---------------------------------HHHHHHHHHHhhcCCCCcEEEECCcHHHHHHH
Confidence 11111000 000 011122333333 3457899999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEc
Q 002183 346 AMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFAT 425 (955)
Q Consensus 346 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT 425 (955)
+..|..... -...+..+||+|++.+|..+++.|++|.++|||||
T Consensus 305 ~~~L~~~~~------------------------------------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT 348 (579)
T 3sqw_A 305 CSILKNEFK------------------------------------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT 348 (579)
T ss_dssp HHHHHHHHT------------------------------------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHhhc------------------------------------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc
Confidence 999865200 01247889999999999999999999999999999
Q ss_pred ccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHh
Q 002183 426 ETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVL 496 (955)
Q Consensus 426 ~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~ 496 (955)
+++++|||+|++++|| +||. |.++..|+||+|||||.|.. |.+++++.+. +...++.+..
T Consensus 349 ~~~~~GiDip~v~~VI----~~~~----p~s~~~y~Qr~GRagR~g~~--g~~i~~~~~~-e~~~~~~l~~ 408 (579)
T 3sqw_A 349 DVGARGMDFPNVHEVL----QIGV----PSELANYIHRIGRTARSGKE--GSSVLFICKD-ELPFVRELED 408 (579)
T ss_dssp GGGTSSCCCTTCCEEE----EESC----CSSTTHHHHHHTTSSCTTCC--EEEEEEEEGG-GHHHHHHHHH
T ss_pred chhhcCCCcccCCEEE----EcCC----CCCHHHhhhhccccccCCCC--ceEEEEEccc-HHHHHHHHHH
Confidence 9999999999999999 8888 88999999999999999984 6666666544 4455555543
No 21
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.4e-43 Score=412.24 Aligned_cols=323 Identities=18% Similarity=0.233 Sum_probs=140.0
Q ss_pred chhhhhcCCCC-CCHHHHHHHHHHhcC--CcEEEEcCCCCchHHHHHHHHHHHHhcC---CeEEEEccChhhHHHHHHHH
Q 002183 66 NGEMAKTYSFE-LDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFRDK---QRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 66 ~~~~~~~~~f~-l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~~~i~~~l~~~---~~vl~l~PtkaLa~Q~~~~l 139 (955)
.......++|. |+|+|.+|++.+..+ ++++++||||||||++|++|++..+..+ +++||++|+++|+.|+++.+
T Consensus 103 l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~ 182 (479)
T 3fmp_B 103 LLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVI 182 (479)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHH
Confidence 33344568998 999999999999876 9999999999999999999999887543 48999999999999998888
Q ss_pred HHhcC-----CeeEEecccccCC----CCCEEEEeHHHHHHHHhc-CCccCCccceEEEEccccCCC-CCChHHHHHHHH
Q 002183 140 HQEFK-----DVGLMTGDVTLSP----NASCLVMTTEILRGMLYR-GSEVLKEVAWVIFDEIHYMKD-RERGVVWEESII 208 (955)
Q Consensus 140 ~~~~~-----~vg~~tGd~~~~~----~~~IlV~Tpe~L~~~l~~-~~~~l~~l~~vIiDEaH~l~d-~~rg~~~~~ii~ 208 (955)
.++.. .++...|+..... .++|+|+||++|.+++.+ +...+.++++||+||||++.+ .++...+..+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~ 262 (479)
T 3fmp_B 183 EQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQR 262 (479)
T ss_dssp HHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHT
T ss_pred HHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHh
Confidence 87643 4566666655433 568999999999998865 344568999999999999886 566666777778
Q ss_pred hCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcc--cceEEEeecCCCceEEeecccchhchhhHHHHHHH
Q 002183 209 FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPT--PLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDT 286 (955)
Q Consensus 209 ~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~--pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (955)
.+++++|++++|||+++.. ..+.......+..+........ .+.+ .+.....
T Consensus 263 ~~~~~~~~i~~SAT~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~~--------------- 316 (479)
T 3fmp_B 263 MLPRNCQMLLFSATFEDSV--WKFAQKVVPDPNVIKLKREEETLDTIKQ---------YYVLCSS--------------- 316 (479)
T ss_dssp TSCTTSEEEEEESCCCHHH--HHHHHHHSSSEEEEEEC------------------------------------------
T ss_pred hCCccceEEEEeCCCCHHH--HHHHHHHcCCCeEEeccccccCcCCceE---------EEEEeCC---------------
Confidence 8889999999999998643 3444444443333322211110 0010 0000000
Q ss_pred HHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 002183 287 FLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366 (955)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~ 366 (955)
.......+...+......++||||+++..|+.++..|...++
T Consensus 317 --------------------------~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~------------ 358 (479)
T 3fmp_B 317 --------------------------RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGH------------ 358 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCc------------
Confidence 011122233333333457899999999999999999976432
Q ss_pred HHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEeccee
Q 002183 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446 (955)
Q Consensus 367 ~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~ 446 (955)
++.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++|| +
T Consensus 359 ---------------------------~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI----~ 407 (479)
T 3fmp_B 359 ---------------------------QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI----N 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------cEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEE----E
Confidence 378999999999999999999999999999999999999999999999 7
Q ss_pred ccCCCCc--ccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 447 WDGDSHR--YIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 447 ~d~~~~~--~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
||..... ..+..+|+||+|||||.|. .|.+++++++.
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~--~G~~i~~~~~~ 446 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGK--RGLAVNMVDSK 446 (479)
T ss_dssp -----------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCC--CceEEEEEcCc
Confidence 7772111 1466899999999999997 46777776554
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.6e-41 Score=404.49 Aligned_cols=325 Identities=21% Similarity=0.286 Sum_probs=246.3
Q ss_pred chhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC
Q 002183 66 NGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 66 ~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
...+...|||. |+|+|.++|+.+..|+++++++|||+|||++|++|++. .++++||++|+++|+.|+++.+....-
T Consensus 33 ~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~~~~l~~~gi 109 (591)
T 2v1x_A 33 KDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQLMVLKQLGI 109 (591)
T ss_dssp HHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHHHhcCC
Confidence 34455568997 99999999999999999999999999999999999865 477999999999999999999999866
Q ss_pred CeeEEeccccc-------------CCCCCEEEEeHHHHHH------HHhcCCccCCccceEEEEccccCCCCC--ChHHH
Q 002183 145 DVGLMTGDVTL-------------SPNASCLVMTTEILRG------MLYRGSEVLKEVAWVIFDEIHYMKDRE--RGVVW 203 (955)
Q Consensus 145 ~vg~~tGd~~~-------------~~~~~IlV~Tpe~L~~------~l~~~~~~l~~l~~vIiDEaH~l~d~~--rg~~~ 203 (955)
.++.++|+... +...+|+|+|||+|.. .+.+ ...+.++++|||||||++.+++ |.+.+
T Consensus 110 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViDEAH~is~~g~dfr~~~ 188 (591)
T 2v1x_A 110 SATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDEVHCCSQWGHDFRPDY 188 (591)
T ss_dssp CEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEETGGGGSTTCTTCCGGG
T ss_pred cEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEECcccccccccccHHHH
Confidence 88888887642 4578999999998742 2222 2336789999999999999886 55554
Q ss_pred HH--HHHhCCCcceEEEeccccCCh--HHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhh
Q 002183 204 EE--SIIFLPPAIKMVFLSATMSNA--TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDN 279 (955)
Q Consensus 204 ~~--ii~~l~~~~~~v~lSAT~~n~--~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (955)
.. .+....+++++++||||+++. .++..|++. ....++........+...+. .....
T Consensus 189 ~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~---~~~~~~~~~~~r~nl~~~v~------------~~~~~---- 249 (591)
T 2v1x_A 189 KALGILKRQFPNASLIGLTATATNHVLTDAQKILCI---EKCFTFTASFNRPNLYYEVR------------QKPSN---- 249 (591)
T ss_dssp GGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTC---CSCEEEECCCCCTTEEEEEE------------ECCSS----
T ss_pred HHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCC---CCcEEEecCCCCcccEEEEE------------eCCCc----
Confidence 43 333444579999999999864 344444432 22333333332222222111 10000
Q ss_pred HHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHc-CCCcEEEEEcChHHHHHHHHHhccCCCCCHH
Q 002183 280 FVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQE 358 (955)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~ 358 (955)
. ...+..+++.+... ...++||||+|++.|+.++..|...++.
T Consensus 250 ~---------------------------------~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~--- 293 (591)
T 2v1x_A 250 T---------------------------------EDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIH--- 293 (591)
T ss_dssp H---------------------------------HHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCC---
T ss_pred H---------------------------------HHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCC---
Confidence 0 01122333444322 4578999999999999999999875443
Q ss_pred HHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcE
Q 002183 359 EKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKT 438 (955)
Q Consensus 359 e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~ 438 (955)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 294 ------------------------------------~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~ 337 (591)
T 2v1x_A 294 ------------------------------------AGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVR 337 (591)
T ss_dssp ------------------------------------EEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEE
T ss_pred ------------------------------------EEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCccccc
Confidence 78999999999999999999999999999999999999999999
Q ss_pred EEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHh
Q 002183 439 VVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVL 496 (955)
Q Consensus 439 vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~ 496 (955)
+|| +||. |.+...|+||+|||||.|. .|.|+++++.. +...+..++.
T Consensus 338 ~VI----~~~~----p~s~~~y~Qr~GRaGR~G~--~g~~i~l~~~~-D~~~~~~~~~ 384 (591)
T 2v1x_A 338 FVI----HHSM----SKSMENYYQESGRAGRDDM--KADCILYYGFG-DIFRISSMVV 384 (591)
T ss_dssp EEE----ESSC----CSSHHHHHHHHTTSCTTSS--CEEEEEEECHH-HHHHHHHHTT
T ss_pred EEE----EeCC----CCCHHHHHHHhccCCcCCC--CceEEEEEChH-HHHHHHHHHh
Confidence 999 8888 8999999999999999997 58888887654 4445555543
No 23
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4e-41 Score=397.17 Aligned_cols=321 Identities=19% Similarity=0.243 Sum_probs=245.8
Q ss_pred chhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC
Q 002183 66 NGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 66 ~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
...+...|||. |+|+|.++++.+.+|++++++||||+|||++|++|++. .++++||++|+++|++|+++.+.....
T Consensus 14 ~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~---~~g~~lvi~P~~aL~~q~~~~l~~~gi 90 (523)
T 1oyw_A 14 KQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL---LNGLTVVVSPLISLMKDQVDQLQANGV 90 (523)
T ss_dssp HHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH---SSSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHH---hCCCEEEECChHHHHHHHHHHHHHcCC
Confidence 34455568997 99999999999999999999999999999999999764 367899999999999999999998777
Q ss_pred CeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCC--ChHHHHHH---HH
Q 002183 145 DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE--RGVVWEES---II 208 (955)
Q Consensus 145 ~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~--rg~~~~~i---i~ 208 (955)
.++.++|+.+. ....+|+|+|||+|.+..........++++||+||||++.+++ +.+.+..+ ..
T Consensus 91 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~ 170 (523)
T 1oyw_A 91 AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQ 170 (523)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHH
T ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHH
Confidence 88888887642 2468999999999964322211224689999999999999876 44444332 33
Q ss_pred hCCCcceEEEeccccCCh--HHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHH
Q 002183 209 FLPPAIKMVFLSATMSNA--TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDT 286 (955)
Q Consensus 209 ~l~~~~~~v~lSAT~~n~--~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (955)
.+ ++.++++||||+++. .++..|++. ..+...+....+| .+...+. ..
T Consensus 171 ~~-~~~~~i~lSAT~~~~~~~~i~~~l~~--~~~~~~~~~~~r~-~l~~~v~-----------~~--------------- 220 (523)
T 1oyw_A 171 RF-PTLPFMALTATADDTTRQDIVRLLGL--NDPLIQISSFDRP-NIRYMLM-----------EK--------------- 220 (523)
T ss_dssp HC-TTSCEEEEESCCCHHHHHHHHHHHTC--CSCEEEECCCCCT-TEEEEEE-----------EC---------------
T ss_pred hC-CCCCEEEEeCCCCHHHHHHHHHHhCC--CCCeEEeCCCCCC-ceEEEEE-----------eC---------------
Confidence 34 468999999999865 455666642 2232222222222 2221111 00
Q ss_pred HHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 002183 287 FLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366 (955)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~ 366 (955)
......+++.+......++||||+|++.|+.++..|...++.
T Consensus 221 ---------------------------~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~----------- 262 (523)
T 1oyw_A 221 ---------------------------FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGIS----------- 262 (523)
T ss_dssp ---------------------------SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCC-----------
T ss_pred ---------------------------CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCC-----------
Confidence 112334555565556679999999999999999999875443
Q ss_pred HHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEeccee
Q 002183 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK 446 (955)
Q Consensus 367 ~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~ 446 (955)
+..|||+|++.+|+.+++.|++|.++|||||+++++|||+|++++|| +
T Consensus 263 ----------------------------~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI----~ 310 (523)
T 1oyw_A 263 ----------------------------AAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV----H 310 (523)
T ss_dssp ----------------------------EEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEE----E
T ss_pred ----------------------------EEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEE----E
Confidence 78999999999999999999999999999999999999999999999 8
Q ss_pred ccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHh
Q 002183 447 WDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVL 496 (955)
Q Consensus 447 ~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~ 496 (955)
||. |.++.+|+||+|||||.|. .|.+++++++. +...++.++.
T Consensus 311 ~~~----p~s~~~y~Qr~GRaGR~g~--~~~~~l~~~~~-d~~~~~~~~~ 353 (523)
T 1oyw_A 311 FDI----PRNIESYYQETGRAGRDGL--PAEAMLFYDPA-DMAWLRRCLE 353 (523)
T ss_dssp SSC----CSSHHHHHHHHTTSCTTSS--CEEEEEEECHH-HHHHHHHHHH
T ss_pred ECC----CCCHHHHHHHhccccCCCC--CceEEEEeCHH-HHHHHHHHHh
Confidence 888 8999999999999999998 47888877654 4444555544
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=6.5e-43 Score=399.97 Aligned_cols=322 Identities=20% Similarity=0.256 Sum_probs=150.4
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh---cCCeEEEEccChhhHHHHHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~---~~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
........+||. |+|+|+++++.+..|++++++||||+|||++|.+|++..+. .+.++||++|+++|++|+++++.
T Consensus 31 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~ 110 (394)
T 1fuu_A 31 NLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVM 110 (394)
T ss_dssp HHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHH
Confidence 344444567886 99999999999999999999999999999999999988774 36799999999999999999999
Q ss_pred HhcC----CeeEEecccccC------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC
Q 002183 141 QEFK----DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (955)
Q Consensus 141 ~~~~----~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l 210 (955)
+++. .++.++|+.... .+++|+|+||++|.+.+.++...+.++++||+||||++.++++...+..++..+
T Consensus 111 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~ 190 (394)
T 1fuu_A 111 ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 190 (394)
T ss_dssp HHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhC
Confidence 8865 567788876532 257999999999999988877778899999999999998888899999999999
Q ss_pred CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHh
Q 002183 211 PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQ 290 (955)
Q Consensus 211 ~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 290 (955)
++..|++++|||+++. +.+++......+..+........+-. ....+......
T Consensus 191 ~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~------------------ 243 (394)
T 1fuu_A 191 PPTTQVVLLSATMPND--VLEVTTKFMRNPVRILVKKDELTLEG-------IKQFYVNVEEE------------------ 243 (394)
T ss_dssp CTTCEEEEECSSCCHH--HHHHHHHHCCSCEEEEECC-------------------------------------------
T ss_pred CCCceEEEEEEecCHH--HHHHHHHhcCCCeEEEecCccccCCC-------ceEEEEEcCch------------------
Confidence 9999999999999854 34555555555554433221111000 00000000000
Q ss_pred hccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH
Q 002183 291 KIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNA 370 (955)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~ 370 (955)
......+...+......++||||++++.++.++..|...++
T Consensus 244 -----------------------~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~---------------- 284 (394)
T 1fuu_A 244 -----------------------EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKF---------------- 284 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------hhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCC----------------
Confidence 00111122222223456899999999999999999876433
Q ss_pred HhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCC
Q 002183 371 VDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGD 450 (955)
Q Consensus 371 ~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~ 450 (955)
++..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++|| .||.
T Consensus 285 -----------------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi----~~~~- 336 (394)
T 1fuu_A 285 -----------------------TVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI----NYDL- 336 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------eEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEE----EeCC-
Confidence 267899999999999999999999999999999999999999999999 7777
Q ss_pred CCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 451 SHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 451 ~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|.++.+|+||+|||||.|++ |.+++++++.
T Consensus 337 ---p~s~~~~~Qr~GR~~R~g~~--g~~~~~~~~~ 366 (394)
T 1fuu_A 337 ---PANKENYIHRIGRGGRFGRK--GVAINFVTNE 366 (394)
T ss_dssp -----------------------------------
T ss_pred ---CCCHHHHHHHcCcccCCCCC--ceEEEEEchh
Confidence 88999999999999999985 5666665443
No 25
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.5e-41 Score=391.53 Aligned_cols=317 Identities=17% Similarity=0.184 Sum_probs=238.3
Q ss_pred chhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-
Q 002183 66 NGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK- 144 (955)
Q Consensus 66 ~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~- 144 (955)
...+.+.++|+|+|+|.++++.+.+|++++++||||||||++|+++++..+..++++||++||++|+.|+++.++.+++
T Consensus 11 ~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 90 (414)
T 3oiy_A 11 RSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADE 90 (414)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccC
Confidence 3455667899999999999999999999999999999999999999988888899999999999999999999999754
Q ss_pred --CeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCC-----------CCCh
Q 002183 145 --DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD-----------RERG 200 (955)
Q Consensus 145 --~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d-----------~~rg 200 (955)
.++.++|+.+. +.+++|+|+||++|.+++.. ..+.++++||+||||++.+ .++.
T Consensus 91 ~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~ 168 (414)
T 3oiy_A 91 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIP 168 (414)
T ss_dssp SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCC
T ss_pred CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCCc
Confidence 78889998765 23489999999999877764 4467899999999998754 3444
Q ss_pred HH-HHHHHHhCC-----------CcceEEEeccc-cCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEE
Q 002183 201 VV-WEESIIFLP-----------PAIKMVFLSAT-MSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYL 267 (955)
Q Consensus 201 ~~-~~~ii~~l~-----------~~~~~v~lSAT-~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~ 267 (955)
.. +..++..++ +..|++++||| .|.... ..+...... ..+......+..+.+..+.
T Consensus 169 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~~~~~~-------- 237 (414)
T 3oiy_A 169 EEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR-PLLFRDLLN--FTVGRLVSVARNITHVRIS-------- 237 (414)
T ss_dssp HHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSST-THHHHHHHS--CCSSCCCCCCCSEEEEEES--------
T ss_pred HHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhH-HHHHHHhhc--cCcCccccccccchheeec--------
Confidence 44 677777766 78999999999 443311 122222111 0000011111112221110
Q ss_pred eecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHH
Q 002183 268 VVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAM 347 (955)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~ 347 (955)
. .....+...+.. ...++||||+++..|+.++.
T Consensus 238 -~---------------------------------------------~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~ 270 (414)
T 3oiy_A 238 -S---------------------------------------------RSKEKLVELLEI-FRDGILIFAQTEEEGKELYE 270 (414)
T ss_dssp -S---------------------------------------------CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHH
T ss_pred -c---------------------------------------------CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHH
Confidence 0 112233333333 23789999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeE-eecCCCCHHHHHHHHHHHhcCCccEEEE--
Q 002183 348 SMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIA-VHHSGLLPVIKELVELLFQEGLVKALFA-- 424 (955)
Q Consensus 348 ~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~-~~H~~l~~~~R~~v~~~F~~g~i~VLva-- 424 (955)
.|...++. +. .+||. .|+ ++.|++|.++||||
T Consensus 271 ~L~~~~~~---------------------------------------~~~~~h~~----~r~--~~~f~~g~~~vLvat~ 305 (414)
T 3oiy_A 271 YLKRFKFN---------------------------------------VGETWSEF----EKN--FEDFKVGKINILIGVQ 305 (414)
T ss_dssp HHHHTTCC---------------------------------------EEESSSCH----HHH--HHHHHTTSCSEEEEEC
T ss_pred HHHHcCCc---------------------------------------eehhhcCc----chH--HHHHhCCCCeEEEEec
Confidence 99875544 55 78885 444 99999999999999
Q ss_pred --cccccccCCCCC-cEEEEecceeccCCCCcc--cCHHHHHHHhccCCCCCCC--CceEEEEEeCCcccHHHHHHhH
Q 002183 425 --TETFAMGLNMPA-KTVVFTAVKKWDGDSHRY--IGSGEYIQMSGRAGRRGKD--DRGICIIMVDEQMEMNTLKDMV 495 (955)
Q Consensus 425 --T~~la~Gidip~-~~vVi~~~~~~d~~~~~~--~s~~ey~Q~~GRaGR~G~~--~~g~~ii~~~~~~~~~~~~~l~ 495 (955)
|+++++|+|+|+ +++|| +||. | .++.+|+||+|||||.|.+ ..|.+++++++......+++.+
T Consensus 306 s~T~~~~~GiDip~~v~~VI----~~~~----p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~ 375 (414)
T 3oiy_A 306 AYYGKLTRGVDLPERIKYVI----FWGT----PSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRL 375 (414)
T ss_dssp CTTCCCCCCCCCTTTCCEEE----EESC----CTTTCHHHHHHHHGGGCCEETTEECCEEEEEECCCHHHHHHHHHHH
T ss_pred CcCchhhccCccccccCEEE----EECC----CCCCCHHHHHHHhCccccCCCCCCcceEEEEEEccHHHHHHHHHHh
Confidence 999999999999 99999 8888 8 8999999999999999975 4799999985443333444433
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.6e-41 Score=395.32 Aligned_cols=338 Identities=18% Similarity=0.234 Sum_probs=223.9
Q ss_pred hcCCCC-CCHHHHHHHHHHhcC--CcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHHHHHHHhcC
Q 002183 71 KTYSFE-LDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 71 ~~~~f~-l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
...+|. |+++|.+|++.+.++ ++++++||||||||++|+++++..+.. +.++||++|+++|++|++++++++++
T Consensus 135 ~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~ 214 (508)
T 3fho_A 135 XXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGK 214 (508)
T ss_dssp ----CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHST
T ss_pred ccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCC
Confidence 345776 999999999999887 999999999999999999999988754 45899999999999999999999876
Q ss_pred C--e--eEEecccc---cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCC-CCChHHHHHHHHhCCCcceE
Q 002183 145 D--V--GLMTGDVT---LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD-RERGVVWEESIIFLPPAIKM 216 (955)
Q Consensus 145 ~--v--g~~tGd~~---~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d-~~rg~~~~~ii~~l~~~~~~ 216 (955)
. + ....++.. ...+++|+|+||+++.+.+.+....+.++++||+||||++.+ .++...+..+...++++.|+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~ 294 (508)
T 3fho_A 215 YTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI 294 (508)
T ss_dssp TSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEE
T ss_pred ccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeE
Confidence 3 2 22233322 223689999999999998888777789999999999999987 67888888899999999999
Q ss_pred EEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCc
Q 002183 217 VFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRR 296 (955)
Q Consensus 217 v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (955)
+++|||+++..+ .+.......+..+..... ..+.. .....+......
T Consensus 295 i~lSAT~~~~~~--~~~~~~~~~~~~i~~~~~-~~~~~------~~~~~~~~~~~~------------------------ 341 (508)
T 3fho_A 295 VLFSATFSERVE--KYAERFAPNANEIRLKTE-ELSVE------GIKQLYMDCQSE------------------------ 341 (508)
T ss_dssp EEEESCCSTHHH--HHHHHHSTTCEEECCCCC-C----------CCCCEEEEC--C------------------------
T ss_pred EEEeCCCCHHHH--HHHHHhcCCCeEEEeccc-cCCcc------cceEEEEECCch------------------------
Confidence 999999987422 333333333333322111 11000 001111111100
Q ss_pred cCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhccc
Q 002183 297 ENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNE 376 (955)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~ 376 (955)
......+...+......++||||++++.|+.++..|...+.
T Consensus 342 -----------------~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~---------------------- 382 (508)
T 3fho_A 342 -----------------EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGH---------------------- 382 (508)
T ss_dssp -----------------HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTC----------------------
T ss_pred -----------------HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCC----------------------
Confidence 00111233333333557999999999999999999977443
Q ss_pred ccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcc--
Q 002183 377 EDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY-- 454 (955)
Q Consensus 377 ~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~-- 454 (955)
++..|||++++.+|+.+++.|++|.++|||||+++++|+|+|++++|| .||....+.
T Consensus 383 -----------------~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI----~~~~p~~~~~~ 441 (508)
T 3fho_A 383 -----------------TVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVV----NYDMPLDQAGR 441 (508)
T ss_dssp -----------------CCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEE----C----CC----
T ss_pred -----------------cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEE----EECCCCcccCC
Confidence 378999999999999999999999999999999999999999999999 677621111
Q ss_pred cCHHHHHHHhccCCCCCCCCceEEEEEeCCc---ccHHHHHHhHhCCCCccc
Q 002183 455 IGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ---MEMNTLKDMVLGKPAPLV 503 (955)
Q Consensus 455 ~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~---~~~~~~~~l~~~~~~~l~ 503 (955)
.++.+|+||+|||||.|.+ |.+++++++. .....+++++.....++.
T Consensus 442 ~s~~~~~Qr~GRagR~g~~--g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~ 491 (508)
T 3fho_A 442 PDPQTYLHRIGRTGRFGRV--GVSINFVHDKKSWEEMNAIQEYFQRPITRVP 491 (508)
T ss_dssp -CTHHHHHTTSCCC-------CEEEEEECTTTSSSSHHHHHHHSCCCCC---
T ss_pred CCHHHHHHHhhhcCCCCCC--cEEEEEEeChHHHHHHHHHHHHHCCCcccCC
Confidence 6889999999999999985 5555555433 235556666555444443
No 27
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.4e-38 Score=376.10 Aligned_cols=370 Identities=17% Similarity=0.194 Sum_probs=195.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc-----CCeEEEEccChhhHHHHHHHHHHhcC---
Q 002183 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-----KQRVIYTSPLKALSNQKYRELHQEFK--- 144 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-----~~~vl~l~PtkaLa~Q~~~~l~~~~~--- 144 (955)
.+|+|+|+|.++++.+..|+++++++|||+|||++|.+|++..+.. +.++||++|+++|+.|++++|+.+++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3578999999999999999999999999999999999999988865 78999999999999999999999864
Q ss_pred -CeeEEecccccCC-------CCCEEEEeHHHHHHHHhcCCc-cCCccceEEEEccccCCCCCChHHHH-HHHHh-C---
Q 002183 145 -DVGLMTGDVTLSP-------NASCLVMTTEILRGMLYRGSE-VLKEVAWVIFDEIHYMKDRERGVVWE-ESIIF-L--- 210 (955)
Q Consensus 145 -~vg~~tGd~~~~~-------~~~IlV~Tpe~L~~~l~~~~~-~l~~l~~vIiDEaH~l~d~~rg~~~~-~ii~~-l--- 210 (955)
.++.++|+..... .++|+|+||++|.+++..+.. .+.++++||+||||++.+++....+. ..+.. +
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhccc
Confidence 6788889886543 589999999999999988766 78999999999999998765322221 11111 1
Q ss_pred CCcceEEEeccccC--ChHHHHHHHhhhcC-----CCeEEEecCCC--------cccceEEEeecC-CCceEE-----e-
Q 002183 211 PPAIKMVFLSATMS--NATQFAEWICHLHK-----QPCHVVYTDFR--------PTPLQHYVFPVG-GSGLYL-----V- 268 (955)
Q Consensus 211 ~~~~~~v~lSAT~~--n~~~~~~~l~~~~~-----~~~~v~~~~~r--------p~pl~~~~~~~~-~~~~~~-----~- 268 (955)
++..++++||||++ +..++.+|+..+.. ....+...... +.|...+..... ....+. .
T Consensus 164 ~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (556)
T 4a2p_A 164 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 243 (556)
T ss_dssp --CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHH
Confidence 45689999999994 44566666653210 00111111111 111111111100 000000 0
Q ss_pred -----------------ecccchhchhhHHHHHHHHHH------------------------------------------
Q 002183 269 -----------------VDEKEQFREDNFVKLQDTFLK------------------------------------------ 289 (955)
Q Consensus 269 -----------------~~~~~~~~~~~~~~~~~~l~~------------------------------------------ 289 (955)
......+....+......+.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (556)
T 4a2p_A 244 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 323 (556)
T ss_dssp HHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 000000000000000000000
Q ss_pred ------------hhccCC-ccC-----CCCCCCc-----cCCCCCCCCCcHHHHHHHHHH----cCCCcEEEEEcChHHH
Q 002183 290 ------------QKIGGR-REN-----GKASGRM-----AKGGSGSGGSDIFKIVKMIME----RKFQPVIVFSFSRREC 342 (955)
Q Consensus 290 ------------~~~~~~-~~~-----~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~----~~~~~~IVF~~s~~~~ 342 (955)
...... ... ....... ..........++..+++.+.+ ....++||||+++..+
T Consensus 324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~ 403 (556)
T 4a2p_A 324 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 403 (556)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHH
Confidence 000000 000 0000000 000000113344455555543 4668999999999999
Q ss_pred HHHHHHhccCC----CCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhc-C
Q 002183 343 EQHAMSMSKLD----FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQE-G 417 (955)
Q Consensus 343 ~~la~~L~~~~----~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~-g 417 (955)
+.++..|.... +.. ..+...+...+||+|++.+|..+++.|++ |
T Consensus 404 ~~l~~~L~~~~~~~~~~~-------------------------------~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g 452 (556)
T 4a2p_A 404 SALKKCMEENPILNYIKP-------------------------------GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 452 (556)
T ss_dssp HHHHHHHTTCSGGGSCCE-------------------------------EC-----------------------------
T ss_pred HHHHHHHHhCCCcceeee-------------------------------eEEEccCCcccccccCHHHHHHHHHHhcccC
Confidence 99999997641 110 01123345678999999999999999999 9
Q ss_pred CccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 418 LVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 418 ~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
.++|||||+++++|||+|++++|| +||. |.++..|+||+|| ||.+ .|.+++++++.
T Consensus 453 ~~~vLvaT~~~~~GiDip~v~~VI----~~d~----p~s~~~~~Qr~GR-gR~~---~g~~~~l~~~~ 508 (556)
T 4a2p_A 453 DNRLLIATSVADEGIDIVQCNLVV----LYEY----SGNVTKMIQVRGR-GRAA---GSKCILVTSKT 508 (556)
T ss_dssp -CCEEEEEC-----------CEEE----EETC----CSCHHHHHHC------------CCEEEEESCH
T ss_pred ceEEEEEcCchhcCCCchhCCEEE----EeCC----CCCHHHHHHhcCC-CCCC---CceEEEEEeCc
Confidence 999999999999999999999999 8999 9999999999999 9983 47888887665
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.9e-38 Score=396.27 Aligned_cols=317 Identities=17% Similarity=0.183 Sum_probs=237.1
Q ss_pred hhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC---
Q 002183 68 EMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK--- 144 (955)
Q Consensus 68 ~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~--- 144 (955)
.+...+||+|+|+|.+|++.+..|++++++||||||||++|+.+++..+..+.++||++||++|++|+++.++++..
T Consensus 70 ~~~~~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i 149 (1104)
T 4ddu_A 70 FFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKV 149 (1104)
T ss_dssp HHHHHSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTS
T ss_pred HHHHhcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCC
Confidence 44567899999999999999999999999999999999999999998888899999999999999999999999542
Q ss_pred CeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCC-----------CCChHH
Q 002183 145 DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD-----------RERGVV 202 (955)
Q Consensus 145 ~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d-----------~~rg~~ 202 (955)
.++.++|+.+. +..++|+|+||++|.+++.. ..+.++++||+||||++.+ +++...
T Consensus 150 ~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~ 227 (1104)
T 4ddu_A 150 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 227 (1104)
T ss_dssp CEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHH
T ss_pred eEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHH
Confidence 78899998865 23589999999999877664 4467899999999998775 445555
Q ss_pred -HHHHHHhCC-----------CcceEEEecccc-CChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEee
Q 002183 203 -WEESIIFLP-----------PAIKMVFLSATM-SNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVV 269 (955)
Q Consensus 203 -~~~ii~~l~-----------~~~~~v~lSAT~-~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~ 269 (955)
+..++..++ ++.|++++|||+ |.... ..++..... +.+......+..+.+.... .
T Consensus 228 ~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~-~~~~~~~l~--i~v~~~~~~~~~i~~~~~~---------~ 295 (1104)
T 4ddu_A 228 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR-PLLFRDLLN--FTVGRLVSVARNITHVRIS---------S 295 (1104)
T ss_dssp HHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSST-THHHHHHTC--CCCCBCCCCCCCEEEEEES---------C
T ss_pred HHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHH-HHHhhccee--EEeccCCCCcCCceeEEEe---------c
Confidence 677777777 789999999994 43311 122222211 1111111111222222110 0
Q ss_pred cccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHh
Q 002183 270 DEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSM 349 (955)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L 349 (955)
.....+...+... ..++||||++++.|+.++..|
T Consensus 296 ---------------------------------------------~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L 329 (1104)
T 4ddu_A 296 ---------------------------------------------RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYL 329 (1104)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHH
T ss_pred ---------------------------------------------CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHH
Confidence 1122333333333 379999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeE-eecCCCCHHHHHHHHHHHhcCCccEEEE----
Q 002183 350 SKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIA-VHHSGLLPVIKELVELLFQEGLVKALFA---- 424 (955)
Q Consensus 350 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~-~~H~~l~~~~R~~v~~~F~~g~i~VLva---- 424 (955)
...++. +. .+||. |+. ++.|++|.++||||
T Consensus 330 ~~~g~~---------------------------------------~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~ 364 (1104)
T 4ddu_A 330 KRFKFN---------------------------------------VGETWSEF-----EKN-FEDFKVGKINILIGVQAY 364 (1104)
T ss_dssp HHTTCC---------------------------------------EEESSSSH-----HHH-HHHHHHTSCSEEEEETTT
T ss_pred HhCCCC---------------------------------------eeeEecCc-----HHH-HHHHHCCCCCEEEEecCC
Confidence 876554 56 78882 555 99999999999999
Q ss_pred cccccccCCCCC-cEEEEecceeccCCCCc--------------------------------------------------
Q 002183 425 TETFAMGLNMPA-KTVVFTAVKKWDGDSHR-------------------------------------------------- 453 (955)
Q Consensus 425 T~~la~Gidip~-~~vVi~~~~~~d~~~~~-------------------------------------------------- 453 (955)
|+++++|||+|+ +++|| +||...++
T Consensus 365 TdvlarGIDip~~V~~VI----~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~ 440 (1104)
T 4ddu_A 365 YGKLTRGVDLPERIKYVI----FWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEK 440 (1104)
T ss_dssp HHHHCCSCCCTTTCCEEE----EESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_pred CCeeEecCcCCCCCCEEE----EECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999 99999 77774300
Q ss_pred ------------------ccCHHHHHHHhccCCCCC--CCCceEEEEEeCCcccHHHHHH
Q 002183 454 ------------------YIGSGEYIQMSGRAGRRG--KDDRGICIIMVDEQMEMNTLKD 493 (955)
Q Consensus 454 ------------------~~s~~ey~Q~~GRaGR~G--~~~~g~~ii~~~~~~~~~~~~~ 493 (955)
..++..|+||+|||||.| ..+.|.+|+++++......+++
T Consensus 441 i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~ 500 (1104)
T 4ddu_A 441 VKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKT 500 (1104)
T ss_dssp HHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHH
T ss_pred HhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHH
Confidence 017789999999999954 4457999999976533444433
No 29
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.5e-37 Score=368.80 Aligned_cols=369 Identities=16% Similarity=0.198 Sum_probs=216.3
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc-----CCeEEEEccChhhHHHHHHHHHHhcC----
Q 002183 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-----KQRVIYTSPLKALSNQKYRELHQEFK---- 144 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-----~~~vl~l~PtkaLa~Q~~~~l~~~~~---- 144 (955)
+|+|+|+|.++++.+..|+++++++|||+|||++|.++++..+.. +.++||++|+++|+.|++++|..+++
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 578999999999999999999999999999999999999998865 78999999999999999999999864
Q ss_pred CeeEEecccccCC-------CCCEEEEeHHHHHHHHhcCCc-cCCccceEEEEccccCCCCCChHHHHHHH----Hh-C-
Q 002183 145 DVGLMTGDVTLSP-------NASCLVMTTEILRGMLYRGSE-VLKEVAWVIFDEIHYMKDRERGVVWEESI----IF-L- 210 (955)
Q Consensus 145 ~vg~~tGd~~~~~-------~~~IlV~Tpe~L~~~l~~~~~-~l~~l~~vIiDEaH~l~d~~rg~~~~~ii----~~-l- 210 (955)
.++.++|+..... +++|+|+||++|.+++..+.. .+.++++||+||||++.+.. . +..++ .. +
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~--~-~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH--P-YNQIMFRYLDHKLG 158 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC--H-HHHHHHHHHHHHTS
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc--h-HHHHHHHHHHhhhc
Confidence 6888999986654 489999999999999987766 68899999999999998763 2 33322 11 1
Q ss_pred ---CCcceEEEeccccCCh--HHHHHHHhh------hcCCCeEEEecC--------CCcccceEEEeecCCC-ceEE-ee
Q 002183 211 ---PPAIKMVFLSATMSNA--TQFAEWICH------LHKQPCHVVYTD--------FRPTPLQHYVFPVGGS-GLYL-VV 269 (955)
Q Consensus 211 ---~~~~~~v~lSAT~~n~--~~~~~~l~~------~~~~~~~v~~~~--------~rp~pl~~~~~~~~~~-~~~~-~~ 269 (955)
.+..++++||||+++. .++.+++.. ... ...+.... +.+.|...+....... ..+. ..
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALD-ASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCII 237 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTT-CSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcC-CeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHH
Confidence 2567999999999642 222222211 111 01111111 1111222211111000 0000 00
Q ss_pred -----------------------cccchhchhhHHHHHHH----------------------------------------
Q 002183 270 -----------------------DEKEQFREDNFVKLQDT---------------------------------------- 286 (955)
Q Consensus 270 -----------------------~~~~~~~~~~~~~~~~~---------------------------------------- 286 (955)
.....+....+......
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (555)
T 3tbk_A 238 SQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIIS 317 (555)
T ss_dssp HHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00000000000000000
Q ss_pred -----------HHHhhccCCccCCCCC---------CCc-----cCCCCCCCCCcHHHHHHHHHH----cCCCcEEEEEc
Q 002183 287 -----------FLKQKIGGRRENGKAS---------GRM-----AKGGSGSGGSDIFKIVKMIME----RKFQPVIVFSF 337 (955)
Q Consensus 287 -----------l~~~~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~~~~l~~~l~~----~~~~~~IVF~~ 337 (955)
+............... ... ..........++..+.+.+.. ....++||||+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~ 397 (555)
T 3tbk_A 318 EDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVK 397 (555)
T ss_dssp HHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeC
Confidence 0000000000000000 000 000000012234444444433 35689999999
Q ss_pred ChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhc-
Q 002183 338 SRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQE- 416 (955)
Q Consensus 338 s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~- 416 (955)
++..++.++..|...+.... +. ...+...+...+||+|++.+|..+++.|++
T Consensus 398 ~~~~~~~l~~~L~~~~~~~~----------------~~-----------~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 398 TRALVDALKKWIEENPALSF----------------LK-----------PGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp SHHHHHHHHHHHHHCGGGTT----------------CC-----------EEECCC-------------------------
T ss_pred cHHHHHHHHHHHhhCcCcCc----------------ee-----------eeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 99999999999976432100 00 000112346678999999999999999999
Q ss_pred CCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 417 GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 417 g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|.++|||||+++++|||+|++++|| +||. |.++..|+||+|| ||. . .|.+++++++.
T Consensus 451 g~~~vLvaT~~~~~GlDlp~v~~VI----~~d~----p~s~~~~~Qr~GR-gR~-~--~g~~~~l~~~~ 507 (555)
T 3tbk_A 451 GDNNILIATSVADEGIDIAECNLVI----LYEY----VGNVIKMIQTRGR-GRA-R--DSKCFLLTSSA 507 (555)
T ss_dssp -CCSEEEECCCTTCCEETTSCSEEE----EESC----CSSCCCEECSSCC-CTT-T--SCEEEEEESCH
T ss_pred CCeeEEEEcchhhcCCccccCCEEE----EeCC----CCCHHHHHHhcCc-CcC-C--CceEEEEEcCC
Confidence 9999999999999999999999999 8998 8999999999999 887 3 58888888665
No 30
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6.2e-37 Score=377.10 Aligned_cols=368 Identities=15% Similarity=0.177 Sum_probs=225.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC------CeEEEEccChhhHHHH-HHHHHHhcC-
Q 002183 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK------QRVIYTSPLKALSNQK-YRELHQEFK- 144 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~------~~vl~l~PtkaLa~Q~-~~~l~~~~~- 144 (955)
-+|+|+|+|.++++.+..|+++++++|||+|||++|++++...+..+ +++||++|+++|+.|+ +++|+++++
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 36789999999999999999999999999999999999998877543 8899999999999999 999999986
Q ss_pred --CeeEEecccccC-------CCCCEEEEeHHHHHHHHh------cCCccCCccceEEEEccccCCCCC-ChHHHHHHHH
Q 002183 145 --DVGLMTGDVTLS-------PNASCLVMTTEILRGMLY------RGSEVLKEVAWVIFDEIHYMKDRE-RGVVWEESII 208 (955)
Q Consensus 145 --~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~------~~~~~l~~l~~vIiDEaH~l~d~~-rg~~~~~ii~ 208 (955)
.++.++|+.... ..++|+|+||++|.+.+. .....+.++++|||||||++.... +.......+.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 788899988765 368999999999998883 334567899999999999986532 2222322222
Q ss_pred h----C---------CCcceEEEeccccCCh---------HHHHHHHhhhcCCCeEEEecC------CCcccceEEEeec
Q 002183 209 F----L---------PPAIKMVFLSATMSNA---------TQFAEWICHLHKQPCHVVYTD------FRPTPLQHYVFPV 260 (955)
Q Consensus 209 ~----l---------~~~~~~v~lSAT~~n~---------~~~~~~l~~~~~~~~~v~~~~------~rp~pl~~~~~~~ 260 (955)
. . .+..++++||||+++. ..+.++...+....+...... +.+.|...+....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 1 1 1567999999999862 233333333221111111100 0011222221111
Q ss_pred CCCc-eE--------------EeecccchhchhhHHH-------------------------------------------
Q 002183 261 GGSG-LY--------------LVVDEKEQFREDNFVK------------------------------------------- 282 (955)
Q Consensus 261 ~~~~-~~--------------~~~~~~~~~~~~~~~~------------------------------------------- 282 (955)
.... .+ ...+....+....+..
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 0000000000000000
Q ss_pred -----HHHHHHHhhccCCccCCCCCC---------------------C-ccC-CCCCCCCCcHHHHHHH-HHHcC-CCcE
Q 002183 283 -----LQDTFLKQKIGGRRENGKASG---------------------R-MAK-GGSGSGGSDIFKIVKM-IMERK-FQPV 332 (955)
Q Consensus 283 -----~~~~l~~~~~~~~~~~~~~~~---------------------~-~~~-~~~~~~~~~~~~l~~~-l~~~~-~~~~ 332 (955)
...............+..... . ... .........+..++.. +...+ ..++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 000000000000000000000 0 000 0011223344444443 33334 6899
Q ss_pred EEEEcChHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCC--------CC
Q 002183 333 IVFSFSRRECEQHAMSMSKLD-FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSG--------LL 403 (955)
Q Consensus 333 IVF~~s~~~~~~la~~L~~~~-~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~--------l~ 403 (955)
||||++++.++.++..|.... +.. ....+..+||+ |+
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~l~~----------------------------------~g~~~~~lhg~~~~~~~~~~~ 449 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEKFAE----------------------------------VGVKAHHLIGAGHSSEFKPMT 449 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCSCC---------------------------------------CEECCCSCCCTTCCCCC
T ss_pred EEEECcHHHHHHHHHHHHhCccccc----------------------------------cCcceEEEECCCCccCCCCCC
Confidence 999999999999999998641 110 01236789999 99
Q ss_pred HHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeC
Q 002183 404 PVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVD 483 (955)
Q Consensus 404 ~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~ 483 (955)
+.+|..+++.|++|.++|||||+++++|||+|++++|| +||. |.++..|+||+|||||.| .+++++...
T Consensus 450 ~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI----~~d~----p~s~~~~~Qr~GRArr~g---~~~~l~~~~ 518 (699)
T 4gl2_A 450 QNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI----RYGL----VTNEIAMVQARGRARADE---STYVLVAHS 518 (699)
T ss_dssp HHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCE----EESC----CCCHHHHHHHHTTSCSSS---CEEEEEEES
T ss_pred HHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEE----EeCC----CCCHHHHHHHcCCCCCCC---ceEEEEEeC
Confidence 99999999999999999999999999999999999999 8998 999999999999987766 355555554
Q ss_pred Cc
Q 002183 484 EQ 485 (955)
Q Consensus 484 ~~ 485 (955)
+.
T Consensus 519 ~~ 520 (699)
T 4gl2_A 519 GS 520 (699)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-36 Score=354.29 Aligned_cols=357 Identities=20% Similarity=0.225 Sum_probs=243.2
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHHHHHhcC----CeeE
Q 002183 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFK----DVGL 148 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~vg~ 148 (955)
+|+|+|+|.++++.+..+ ++++++|||+|||+++..++...+. .+.++||++|+++|+.|+++++.++++ .++.
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 468999999999999888 9999999999999999999887764 678999999999999999999999975 6888
Q ss_pred EecccccC------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccc
Q 002183 149 MTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSAT 222 (955)
Q Consensus 149 ~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT 222 (955)
++|+.... ..++|+|+||+++.+.+..+...+.++++||+||||++.+......+...+....+..++++||||
T Consensus 86 ~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaT 165 (494)
T 1wp9_A 86 LTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTAS 165 (494)
T ss_dssp ECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESC
T ss_pred eeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecC
Confidence 88887532 267999999999999888777778899999999999998654444444445555678899999999
Q ss_pred cCC-hHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhch--hhHHHH----HHHHHHhhccCC
Q 002183 223 MSN-ATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFRE--DNFVKL----QDTFLKQKIGGR 295 (955)
Q Consensus 223 ~~n-~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~l~~~~~~~~ 295 (955)
+.+ ..++.+++..+........ ....+. +..+... ....+........... ..+... ...+.......+
T Consensus 166 p~~~~~~~~~l~~~l~~~~~~~~-~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
T 1wp9_A 166 PGSTPEKIMEVINNLGIEHIEYR-SENSPD-VRPYVKG--IRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241 (494)
T ss_dssp SCSSHHHHHHHHHHTTCCEEEEC-CTTSTT-TGGGCCC--CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred CCCCcHHHHHHHHhcChheeecc-CCCcHH-HHHhcCC--CceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 984 4566666665543222221 111111 0000000 0000000110000000 000000 000000000000
Q ss_pred ccC-------------------CCCCCCc--------------------------------------cCC----------
Q 002183 296 REN-------------------GKASGRM--------------------------------------AKG---------- 308 (955)
Q Consensus 296 ~~~-------------------~~~~~~~--------------------------------------~~~---------- 308 (955)
... ....... ..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhh
Confidence 000 0000000 000
Q ss_pred ---------------CCCCCCCcHHHHHHHHHH----cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Q 002183 309 ---------------GSGSGGSDIFKIVKMIME----RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQN 369 (955)
Q Consensus 309 ---------------~~~~~~~~~~~l~~~l~~----~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~ 369 (955)
.......++..+.+.+.. ....++||||+++..++.++..|...++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~-------------- 387 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIK-------------- 387 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCC--------------
T ss_pred hHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCC--------------
Confidence 000112234445555544 46789999999999999999999875443
Q ss_pred HHhhcccccCCchhHHhHHHHhhcCeEeecC--------CCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEE
Q 002183 370 AVDCLNEEDRNLPAIELMLPLLKRGIAVHHS--------GLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVF 441 (955)
Q Consensus 370 ~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~--------~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi 441 (955)
+..+|| +|++.+|..+++.|++|.++|||||+++++|+|+|++++||
T Consensus 388 -------------------------~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi 442 (494)
T 1wp9_A 388 -------------------------AKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV 442 (494)
T ss_dssp -------------------------EEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEE
T ss_pred -------------------------cEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEE
Confidence 678888 99999999999999999999999999999999999999999
Q ss_pred ecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 442 TAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 442 ~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
.||. |.++..|.||+|||||.|. |.++.+..+.
T Consensus 443 ----~~d~----~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~ 475 (494)
T 1wp9_A 443 ----FYEP----VPSAIRSIQRRGRTGRHMP---GRVIILMAKG 475 (494)
T ss_dssp ----ESSC----CHHHHHHHHHHTTSCSCCC---SEEEEEEETT
T ss_pred ----EeCC----CCCHHHHHHHHhhccCCCC---ceEEEEEecC
Confidence 8888 8899999999999999997 7777776554
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=9.4e-37 Score=375.33 Aligned_cols=370 Identities=16% Similarity=0.211 Sum_probs=201.9
Q ss_pred hhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC-----CeEEEEccChhhHHHHHHHHHHhc
Q 002183 70 AKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK-----QRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 70 ~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~-----~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
...+||. |+|+|.++++.+..|+++++++|||+|||++|.++++..+..+ +++||++||++|+.|+++++++++
T Consensus 6 l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~ 85 (696)
T 2ykg_A 6 TNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF 85 (696)
T ss_dssp -CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred ccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 3457776 9999999999999999999999999999999999999877543 789999999999999999999987
Q ss_pred C----CeeEEecccccC-------CCCCEEEEeHHHHHHHHhcCCc-cCCccceEEEEccccCCCCCChHHHH-HHHHh-
Q 002183 144 K----DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGSE-VLKEVAWVIFDEIHYMKDRERGVVWE-ESIIF- 209 (955)
Q Consensus 144 ~----~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~~-~l~~l~~vIiDEaH~l~d~~rg~~~~-~ii~~- 209 (955)
+ .++.++|+.... ..++|+|+||++|.+.+..+.. .+.++++|||||||++.+......+. ..+..
T Consensus 86 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~ 165 (696)
T 2ykg_A 86 ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQK 165 (696)
T ss_dssp TTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHh
Confidence 4 678899987643 3689999999999999987765 68899999999999998653211111 11111
Q ss_pred ----CCCcceEEEeccccCCh-----HHHHHHHhhh-cCCCeEEEecCCCcc-cceEEEeecCCCceEEeecccc--hhc
Q 002183 210 ----LPPAIKMVFLSATMSNA-----TQFAEWICHL-HKQPCHVVYTDFRPT-PLQHYVFPVGGSGLYLVVDEKE--QFR 276 (955)
Q Consensus 210 ----l~~~~~~v~lSAT~~n~-----~~~~~~l~~~-~~~~~~v~~~~~rp~-pl~~~~~~~~~~~~~~~~~~~~--~~~ 276 (955)
.++..++++||||+.+. .+..+++... ..-...++.+..... .+..+.+.. ...+....... .|.
T Consensus 166 ~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p--~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 166 LGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKP--QKFFRKVESRISDKFK 243 (696)
T ss_dssp HTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCC--EEEEEECCCCSCCHHH
T ss_pred hcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCC--ceeEEecCcccCChHH
Confidence 24678999999999731 1222222111 111111222211100 000000000 00000000000 000
Q ss_pred hhhHH---HHHHHHHHhhccCCcc--------------------------------------------------------
Q 002183 277 EDNFV---KLQDTFLKQKIGGRRE-------------------------------------------------------- 297 (955)
Q Consensus 277 ~~~~~---~~~~~l~~~~~~~~~~-------------------------------------------------------- 297 (955)
..+. .....+.......+..
T Consensus 244 -~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 322 (696)
T 2ykg_A 244 -YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 322 (696)
T ss_dssp -HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHH
Confidence 0000 0000000000000000
Q ss_pred ------------------------CCCCCC--C-cc-------------CCCCCCCCCcHHHHHHHHHHc----CCCcEE
Q 002183 298 ------------------------NGKASG--R-MA-------------KGGSGSGGSDIFKIVKMIMER----KFQPVI 333 (955)
Q Consensus 298 ------------------------~~~~~~--~-~~-------------~~~~~~~~~~~~~l~~~l~~~----~~~~~I 333 (955)
...... . .. ..........+..+...+... ...++|
T Consensus 323 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~I 402 (696)
T 2ykg_A 323 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 402 (696)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred HhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEE
Confidence 000000 0 00 000000123344555555543 567899
Q ss_pred EEEcChHHHHHHHHHhccCC----CCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHH
Q 002183 334 VFSFSRRECEQHAMSMSKLD----FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKEL 409 (955)
Q Consensus 334 VF~~s~~~~~~la~~L~~~~----~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~ 409 (955)
|||+++..|+.++..|...+ +... .+...|...+||+|++.+|..
T Consensus 403 IF~~~~~~~~~l~~~L~~~~~~~~~~~~-------------------------------~l~G~~~~~~h~~~~~~eR~~ 451 (696)
T 2ykg_A 403 LFVKTRALVDALKNWIEGNPKLSFLKPG-------------------------------ILTGRGKTNQNTGMTLPAQKC 451 (696)
T ss_dssp EECSCHHHHHHHHHHHHHCTTCCSCCEE-------------------------------C--------------------
T ss_pred EEeCcHHHHHHHHHHHHhCCCcccccee-------------------------------EEEccCCCccccCCCHHHHHH
Confidence 99999999999999998755 2210 111234455588999999999
Q ss_pred HHHHHhc-CCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 410 VELLFQE-GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 410 v~~~F~~-g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
+++.|++ |.++|||||+++++|||+|++++|| +||. |.++..|+||+|| ||.+ .|.+++++++.
T Consensus 452 v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI----~~d~----p~s~~~~~Qr~GR-GR~~---~g~~~~l~~~~ 516 (696)
T 2ykg_A 452 ILDAFKASGDHNILIATSVADEGIDIAQCNLVI----LYEY----VGNVIKMIQTRGR-GRAR---GSKCFLLTSNA 516 (696)
T ss_dssp ---------CCSCSEEEESSCCC---CCCSEEE----EESC----C--CCCC----------C---CCEEEEEESCH
T ss_pred HHHHHHhcCCccEEEEechhhcCCcCccCCEEE----EeCC----CCCHHHHHHhhcc-CcCC---CceEEEEecCC
Confidence 9999998 9999999999999999999999999 8998 8899999999999 9973 48888888654
No 33
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3.2e-36 Score=374.43 Aligned_cols=367 Identities=17% Similarity=0.208 Sum_probs=198.2
Q ss_pred cCCC-CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc-----CCeEEEEccChhhHHHHHHHHHHhcC-
Q 002183 72 TYSF-ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-----KQRVIYTSPLKALSNQKYRELHQEFK- 144 (955)
Q Consensus 72 ~~~f-~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-----~~~vl~l~PtkaLa~Q~~~~l~~~~~- 144 (955)
.+|| +|+|+|.++++.+..|+++++++|||+|||++|.++++..+.. ++++||++|+++|+.|++++|+++++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 3444 4999999999999999999999999999999999999998866 78999999999999999999999864
Q ss_pred ---CeeEEecccccCC-------CCCEEEEeHHHHHHHHhcCCc-cCCccceEEEEccccCCCCCChHHHHHHHH----h
Q 002183 145 ---DVGLMTGDVTLSP-------NASCLVMTTEILRGMLYRGSE-VLKEVAWVIFDEIHYMKDRERGVVWEESII----F 209 (955)
Q Consensus 145 ---~vg~~tGd~~~~~-------~~~IlV~Tpe~L~~~l~~~~~-~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~----~ 209 (955)
.++.++|+...+. +++|+|+||++|.+++.++.. .+.++++||+||||++.+... +..++. .
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~---~~~i~~~~~~~ 399 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMTRYLEQ 399 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH---HHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc---HHHHHHHHHHH
Confidence 7888999886543 689999999999999887765 688999999999999987532 333221 1
Q ss_pred ----CCCcceEEEeccccCC--hHHHHHHHhhh------cCCCeEEEecCCC--------cccceEEEeecCCC-c----
Q 002183 210 ----LPPAIKMVFLSATMSN--ATQFAEWICHL------HKQPCHVVYTDFR--------PTPLQHYVFPVGGS-G---- 264 (955)
Q Consensus 210 ----l~~~~~~v~lSAT~~n--~~~~~~~l~~~------~~~~~~v~~~~~r--------p~pl~~~~~~~~~~-~---- 264 (955)
..+..++++||||++. ..++.+++..+ .. ...+...... ..|...+....... .
T Consensus 400 ~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~-~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHT-CSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred hhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcC-CcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 1456899999999952 22222222111 11 0111111111 11111111100000 0
Q ss_pred ---------------eEE---ee-cccchhchhhHHHHHH----------------------------------------
Q 002183 265 ---------------LYL---VV-DEKEQFREDNFVKLQD---------------------------------------- 285 (955)
Q Consensus 265 ---------------~~~---~~-~~~~~~~~~~~~~~~~---------------------------------------- 285 (955)
.+. .. .....+....+.....
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 000 00 0000000000000000
Q ss_pred -----------HHHH---hhccCCcc-C-----CCCCCCc-----cCCCCCCCCCcHHHHHHHHHH----cCCCcEEEEE
Q 002183 286 -----------TFLK---QKIGGRRE-N-----GKASGRM-----AKGGSGSGGSDIFKIVKMIME----RKFQPVIVFS 336 (955)
Q Consensus 286 -----------~l~~---~~~~~~~~-~-----~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~----~~~~~~IVF~ 336 (955)
.+.. ........ . ....... ..........++..++..+.+ ....++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~ 638 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 0000 00000000 0 0000000 000000113344555555543 5668999999
Q ss_pred cChHHHHHHHHHhccCC----CCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHH
Q 002183 337 FSRRECEQHAMSMSKLD----FNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVEL 412 (955)
Q Consensus 337 ~s~~~~~~la~~L~~~~----~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~ 412 (955)
+++..++.++..|.... +.. ..+...+...+||+|++.+|..+++
T Consensus 639 ~~~~~~~~L~~~L~~~~~~~~~~~-------------------------------~~l~G~~~~~~hg~~~~~eR~~~l~ 687 (797)
T 4a2q_A 639 KTRALVSALKKCMEENPILNYIKP-------------------------------GVLMGRGRRDQTTGMTLPSQKGVLD 687 (797)
T ss_dssp SSHHHHHHHHHHHHTCSTTCSCCC-------------------------------EEC----------------------
T ss_pred CcHHHHHHHHHHHHhCcccccccc-------------------------------eEEEecCCcccCCCCCHHHHHHHHH
Confidence 99999999999997631 110 0112234667899999999999999
Q ss_pred HHhc-CCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 413 LFQE-GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 413 ~F~~-g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
.|++ |.++|||||+++++|||+|++++|| +||. |.++..|+||+|| ||. . .|.+++++++.
T Consensus 688 ~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI----~yd~----p~s~~~~iQr~GR-GR~-~--~g~~i~l~~~~ 749 (797)
T 4a2q_A 688 AFKTSKDNRLLIATSVADEGIDIVQCNLVV----LYEY----SGNVTKMIQVRGR-GRA-A--GSKCILVTSKT 749 (797)
T ss_dssp ------CCSEEEEECC-------CCCSEEE----EESC----CSCHHHHHTC-----------CCCEEEEECCH
T ss_pred HhhccCCceEEEEcCchhcCCCchhCCEEE----EeCC----CCCHHHHHHhcCC-CCC-C--CceEEEEEeCC
Confidence 9999 9999999999999999999999999 8999 9999999999999 998 3 47788887665
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.9e-36 Score=383.13 Aligned_cols=318 Identities=16% Similarity=0.181 Sum_probs=227.4
Q ss_pred CchhhhhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhc
Q 002183 65 YNGEMAKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
+...+...+||+| |+|.++++.+..|++++++||||||||+ |.++++..+ .++.++||++||++|+.|+++.++.++
T Consensus 46 ~~~~~~~~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 46 FVEFFRKCVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp HHHHHHTTTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 3345667789999 9999999999999999999999999998 666666554 568899999999999999999999887
Q ss_pred C--------CeeEEecccccCC---------CCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHH
Q 002183 144 K--------DVGLMTGDVTLSP---------NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES 206 (955)
Q Consensus 144 ~--------~vg~~tGd~~~~~---------~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~i 206 (955)
. .++.++|+.+... +++|+|+||++|.+++.+ ++++++||+||||++.+ ++..++.+
T Consensus 124 ~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~i 197 (1054)
T 1gku_B 124 EKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDKL 197 (1054)
T ss_dssp TTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHHH
T ss_pred hhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHHH
Confidence 5 4677888765321 289999999999987765 67999999999999998 47888888
Q ss_pred HHhC-----------CCcceEEEeccccCChHHHHHHHh-hhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccch
Q 002183 207 IIFL-----------PPAIKMVFLSATMSNATQFAEWIC-HLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQ 274 (955)
Q Consensus 207 i~~l-----------~~~~~~v~lSAT~~n~~~~~~~l~-~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~ 274 (955)
+..+ +...|++++|||+++..++..++. .... +.+.........+.+... + .
T Consensus 198 ~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~--i~v~~~~~~~~~i~~~~~-----------~-~-- 261 (1054)
T 1gku_B 198 LHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN--FDIGSSRITVRNVEDVAV-----------N-D-- 261 (1054)
T ss_dssp HHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC--CCCSCCEECCCCEEEEEE-----------S-C--
T ss_pred HHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE--EEccCcccCcCCceEEEe-----------c-h--
Confidence 7765 356789999999986643333332 1111 000000000111111111 0 0
Q ss_pred hchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCC
Q 002183 275 FREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDF 354 (955)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~ 354 (955)
.....+..++ .. ...++||||++++.|+.++..|... +
T Consensus 262 -------------------------------------~k~~~L~~ll---~~-~~~~~LVF~~t~~~a~~l~~~L~~~-~ 299 (1054)
T 1gku_B 262 -------------------------------------ESISTLSSIL---EK-LGTGGIIYARTGEEAEEIYESLKNK-F 299 (1054)
T ss_dssp -------------------------------------CCTTTTHHHH---TT-SCSCEEEEESSHHHHHHHHHTTTTS-S
T ss_pred -------------------------------------hHHHHHHHHH---hh-cCCCEEEEEcCHHHHHHHHHHHhhc-c
Confidence 0011122222 22 2478999999999999999999764 2
Q ss_pred CCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEE----cccccc
Q 002183 355 NTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFA----TETFAM 430 (955)
Q Consensus 355 ~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLva----T~~la~ 430 (955)
. ++.+||++ +.+++.|++|.++|||| |+++++
T Consensus 300 ~---------------------------------------v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~r 335 (1054)
T 1gku_B 300 R---------------------------------------IGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVR 335 (1054)
T ss_dssp C---------------------------------------EEECTTSS-----SHHHHHHHHTSCSEEEEECC------C
T ss_pred C---------------------------------------eeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEe
Confidence 2 78999998 37788899999999999 999999
Q ss_pred cCCCCCc-EEEEecceeccCCC-------------------------------------------------------C--
Q 002183 431 GLNMPAK-TVVFTAVKKWDGDS-------------------------------------------------------H-- 452 (955)
Q Consensus 431 Gidip~~-~vVi~~~~~~d~~~-------------------------------------------------------~-- 452 (955)
|||+|++ ++|| +||... +
T Consensus 336 GIDip~VI~~VI----~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 411 (1054)
T 1gku_B 336 GLDLPERIRFAV----FVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQA 411 (1054)
T ss_dssp CSCCTTTCCEEE----EESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSC
T ss_pred ccccCCcccEEE----EeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999995 9999 666620 0
Q ss_pred ----------cccCHHHHHHHhccCCCCCCCC--ceEEEEEeCCcccHHHHHHhHh
Q 002183 453 ----------RYIGSGEYIQMSGRAGRRGKDD--RGICIIMVDEQMEMNTLKDMVL 496 (955)
Q Consensus 453 ----------~~~s~~ey~Q~~GRaGR~G~~~--~g~~ii~~~~~~~~~~~~~l~~ 496 (955)
...+...|+||+|||||.|..+ .|++|++.++......+.+.+.
T Consensus 412 ~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~ 467 (1054)
T 1gku_B 412 KDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAK 467 (1054)
T ss_dssp SSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHH
T ss_pred cceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHh
Confidence 0058999999999999987764 5888888776533344444443
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.3e-36 Score=367.16 Aligned_cols=307 Identities=21% Similarity=0.286 Sum_probs=218.6
Q ss_pred CchhhhhcCCCCCCHHHHHHHHHHhcC------CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHH
Q 002183 65 YNGEMAKTYSFELDPFQRVSVACLERN------ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~l~~g------~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~ 138 (955)
+...+...+||+|+++|++|++.+..+ .+++++||||||||++|.+|++..+..|.+++|++||++|+.|+++.
T Consensus 357 ~~~~~~~~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~ 436 (780)
T 1gm5_A 357 LAEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRR 436 (780)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHH
Confidence 445667789999999999999998654 58999999999999999999999999999999999999999999999
Q ss_pred HHHhcC----CeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHH
Q 002183 139 LHQEFK----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (955)
Q Consensus 139 l~~~~~----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~ 203 (955)
+.++++ .+++++|+.+. +..++|+|+||+.+.+ ...+.++++||+||+|++....+
T Consensus 437 l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~qr---- 507 (780)
T 1gm5_A 437 TVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQR---- 507 (780)
T ss_dssp HHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC---------
T ss_pred HHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHHH----
Confidence 999875 67889998753 2368999999998754 24578999999999999754332
Q ss_pred HHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEec-CCCcccceEEEeecCCCceEEeecccchhchhhHHH
Q 002183 204 EESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT-DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVK 282 (955)
Q Consensus 204 ~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~-~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (955)
..+.......++++||||+... .++.... ......++.. .....|+..++. .
T Consensus 508 -~~l~~~~~~~~vL~mSATp~p~-tl~~~~~--g~~~~s~i~~~p~~r~~i~~~~~-----------~------------ 560 (780)
T 1gm5_A 508 -EALMNKGKMVDTLVMSATPIPR-SMALAFY--GDLDVTVIDEMPPGRKEVQTMLV-----------P------------ 560 (780)
T ss_dssp -CCCCSSSSCCCEEEEESSCCCH-HHHHHHT--CCSSCEEECCCCSSCCCCEECCC-----------C------------
T ss_pred -HHHHHhCCCCCEEEEeCCCCHH-HHHHHHh--CCcceeeeeccCCCCcceEEEEe-----------c------------
Confidence 2222334568999999998543 2222221 1111222211 000111211110 0
Q ss_pred HHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHH--cCCCcEEEEEcChHHH--------HHHHHHhccC
Q 002183 283 LQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIME--RKFQPVIVFSFSRREC--------EQHAMSMSKL 352 (955)
Q Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~--------~~la~~L~~~ 352 (955)
......++..+.+ ..+.+++|||++...+ +.++..|...
T Consensus 561 -------------------------------~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~ 609 (780)
T 1gm5_A 561 -------------------------------MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE 609 (780)
T ss_dssp -------------------------------SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGS
T ss_pred -------------------------------cchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh
Confidence 0111222222222 2457899999977553 3344443320
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccC
Q 002183 353 DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGL 432 (955)
Q Consensus 353 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gi 432 (955)
.+ -..+++.+||+|++.+|+.+++.|++|.++|||||+++++||
T Consensus 610 ~~------------------------------------~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GI 653 (780)
T 1gm5_A 610 VF------------------------------------PEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGI 653 (780)
T ss_dssp CC---------------------------------------CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCS
T ss_pred hc------------------------------------CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccc
Confidence 00 013589999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeC
Q 002183 433 NMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVD 483 (955)
Q Consensus 433 dip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~ 483 (955)
|+|++++|| .||.. ..+...|.||+||+||.|. .|.|+++++
T Consensus 654 DiP~v~~VI----i~d~~---r~~l~~l~Qr~GRaGR~g~--~g~~ill~~ 695 (780)
T 1gm5_A 654 DVPRANVMV----IENPE---RFGLAQLHQLRGRVGRGGQ--EAYCFLVVG 695 (780)
T ss_dssp CCTTCCEEE----BCSCS---SSCTTHHHHHHHTSCCSST--TCEEECCCC
T ss_pred cCCCCCEEE----EeCCC---CCCHHHHHHHhcccCcCCC--CCEEEEEEC
Confidence 999999999 67762 2367889999999999997 588888876
No 36
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=8.7e-36 Score=349.49 Aligned_cols=341 Identities=17% Similarity=0.140 Sum_probs=230.7
Q ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-C-eeEE
Q 002183 72 TYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-D-VGLM 149 (955)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~-vg~~ 149 (955)
.++++|+|+|.+|++.+..+.++++++|||+|||++|+.++... +.++||++|+++|+.|++++|.+ |+ . ++.+
T Consensus 89 ~~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~ 164 (472)
T 2fwr_A 89 DAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEF 164 (472)
T ss_dssp CCCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEB
T ss_pred cCCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEE
Confidence 35778999999999999999999999999999999999988766 78999999999999999999999 66 6 8999
Q ss_pred ecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccCChHHH
Q 002183 150 TGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQF 229 (955)
Q Consensus 150 tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~ 229 (955)
+|+.. ..++|+|+||+.+...+.. ...++++||+||||++.+..+.. ++..++ ..++++||||+.+....
T Consensus 165 ~g~~~--~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~~-~~~~l~lSATp~~~~~~ 234 (472)
T 2fwr_A 165 SGRIK--ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFRLGLTATFEREDGR 234 (472)
T ss_dssp SSSCB--CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTCC-CSEEEEEESCCCCTTSG
T ss_pred CCCcC--CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhcC-CCeEEEEecCccCCCCH
Confidence 98875 3578999999998765532 12468999999999999876553 444454 57899999999854432
Q ss_pred HHHHhhhcCCCeEEEecCCCcccc-eEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCc---cCCCCCCCc
Q 002183 230 AEWICHLHKQPCHVVYTDFRPTPL-QHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRR---ENGKASGRM 305 (955)
Q Consensus 230 ~~~l~~~~~~~~~v~~~~~rp~pl-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~ 305 (955)
..++....+.... .... ..+ ..++.+.....+......... ..+......+........- .........
T Consensus 235 ~~~l~~~~~~~~~--~~~~--~~l~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 307 (472)
T 2fwr_A 235 HEILKEVVGGKVF--ELFP--DSLAGKHLAKYTIKRIFVPLAEDER---VEYEKREKVYKQFLRARGITLRRAEDFNKIV 307 (472)
T ss_dssp GGSHHHHTCCEEE--ECCH--HHHTSCCCCSEEECCEEECCCHHHH---HHTTTTTHHHHSCSSSCCCTTTCCSSSTTTT
T ss_pred HHHHHHHhCCeEe--ecCH--HHHhcCcCCCeEEEEEEcCCCHHHH---HHHHHHHHHHHHHHHhcCccccchhhHHHHH
Confidence 2333333221111 1000 000 000000000000000000000 0000000011000000000 000000000
Q ss_pred cCCC-C-----------------CCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 002183 306 AKGG-S-----------------GSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF 367 (955)
Q Consensus 306 ~~~~-~-----------------~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~ 367 (955)
.... . ......+..+.+.+......++||||+++..++.++..|.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~----------------- 370 (472)
T 2fwr_A 308 MASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL----------------- 370 (472)
T ss_dssp TTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----------------
T ss_pred HHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----------------
Confidence 0000 0 0012234455566666667899999999999999988773
Q ss_pred HHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceec
Q 002183 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKW 447 (955)
Q Consensus 368 ~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~ 447 (955)
+..+||++++.+|+.+++.|++|.++|||||+++++|+|+|++++|| .|
T Consensus 371 ---------------------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi----~~ 419 (472)
T 2fwr_A 371 ---------------------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGV----IM 419 (472)
T ss_dssp ---------------------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEE----EE
T ss_pred ---------------------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEE----EE
Confidence 45789999999999999999999999999999999999999999999 78
Q ss_pred cCCCCcccCHHHHHHHhccCCCCCCC-CceEEEEEeCCc
Q 002183 448 DGDSHRYIGSGEYIQMSGRAGRRGKD-DRGICIIMVDEQ 485 (955)
Q Consensus 448 d~~~~~~~s~~ey~Q~~GRaGR~G~~-~~g~~ii~~~~~ 485 (955)
|. |.++..|+||+|||||.|.. +.+.++.+++..
T Consensus 420 ~~----~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 420 SG----SGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp CC----SSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CC----CCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 88 88999999999999999976 577787777654
No 37
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=3.3e-35 Score=351.79 Aligned_cols=319 Identities=19% Similarity=0.231 Sum_probs=237.2
Q ss_pred CchhhhhcCCCCCCHHHHHHHHH------------HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhH
Q 002183 65 YNGEMAKTYSFELDPFQRVSVAC------------LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALS 132 (955)
Q Consensus 65 ~~~~~~~~~~f~l~~~Q~~ai~~------------l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa 132 (955)
+.+.....||+.-+.-|.+++.- ..++++++++||||||||+.++. .+....+.+|++||++||
T Consensus 117 f~~~~~~~fp~~e~~d~l~~i~dl~~p~~~~p~ar~l~rk~vlv~apTGSGKT~~al~----~l~~~~~gl~l~PtR~LA 192 (677)
T 3rc3_A 117 FLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQ----KYFSAKSGVYCGPLKLLA 192 (677)
T ss_dssp HHHHHHHHCGGGGCHHHHHHHTBCCCGGGGCHHHHTSCCEEEEEECCTTSSHHHHHHH----HHHHSSSEEEEESSHHHH
T ss_pred HHHHHHhhCCCcCCHHHHHHHhhccChhhhCHHHHhcCCCEEEEEcCCCCCHHHHHHH----HHHhcCCeEEEeCHHHHH
Confidence 44445566776667777777532 25788999999999999994433 333345679999999999
Q ss_pred HHHHHHHHHhcCCeeEEecccccCC-----CCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHH
Q 002183 133 NQKYRELHQEFKDVGLMTGDVTLSP-----NASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (955)
Q Consensus 133 ~Q~~~~l~~~~~~vg~~tGd~~~~~-----~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii 207 (955)
.|+++++.+.+..+++++|+..... ..+++++|++.+. ....+++|||||||++.+.+||..|+.++
T Consensus 193 ~Qi~~~l~~~g~~v~lltG~~~~iv~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l 264 (677)
T 3rc3_A 193 HEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRAL 264 (677)
T ss_dssp HHHHHHHHHTTCCEEEECSSCEECCSTTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEEECCeeEEecCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHH
Confidence 9999999998779999999976532 3789999997542 35688999999999999999999999999
Q ss_pred HhCC-CcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHH
Q 002183 208 IFLP-PAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDT 286 (955)
Q Consensus 208 ~~l~-~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (955)
..++ +.++++++|||.+....+..+. +..+.+ ....++.++..... .+
T Consensus 265 ~~l~~~~i~il~~SAT~~~i~~l~~~~----~~~~~v-~~~~r~~~l~~~~~---------------~l----------- 313 (677)
T 3rc3_A 265 LGLCAEEVHLCGEPAAIDLVMELMYTT----GEEVEV-RDYKRLTPISVLDH---------------AL----------- 313 (677)
T ss_dssp HHCCEEEEEEEECGGGHHHHHHHHHHH----TCCEEE-EECCCSSCEEECSS---------------CC-----------
T ss_pred HccCccceEEEeccchHHHHHHHHHhc----CCceEE-EEeeecchHHHHHH---------------HH-----------
Confidence 9888 7899999999976444333333 333433 33344444332100 00
Q ss_pred HHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHH
Q 002183 287 FLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQV 366 (955)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~ 366 (955)
.. +.. -....||||++++.|+.++..|...++
T Consensus 314 ----------------------------~~-------l~~-~~~g~iIf~~s~~~ie~la~~L~~~g~------------ 345 (677)
T 3rc3_A 314 ----------------------------ES-------LDN-LRPGDCIVCFSKNDIYSVSRQIEIRGL------------ 345 (677)
T ss_dssp ----------------------------CS-------GGG-CCTTEEEECSSHHHHHHHHHHHHHTTC------------
T ss_pred ----------------------------HH-------HHh-cCCCCEEEEcCHHHHHHHHHHHHhcCC------------
Confidence 00 000 123468999999999999999976432
Q ss_pred HHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhc--CCccEEEEcccccccCCCCCcEEEE-ec
Q 002183 367 FQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQE--GLVKALFATETFAMGLNMPAKTVVF-TA 443 (955)
Q Consensus 367 ~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~--g~i~VLvaT~~la~Gidip~~~vVi-~~ 443 (955)
+++++||+|++.+|+.+++.|++ |.++|||||+++++|||+ .+++|| ..
T Consensus 346 ---------------------------~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~ 397 (677)
T 3rc3_A 346 ---------------------------ESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYS 397 (677)
T ss_dssp ---------------------------CCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESC
T ss_pred ---------------------------CeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECC
Confidence 48999999999999999999999 999999999999999999 555555 33
Q ss_pred ceec--cC---CCCcccCHHHHHHHhccCCCCCCCC-ceEEEEEeCCcccHHHHHHhHhCCCCcccc
Q 002183 444 VKKW--DG---DSHRYIGSGEYIQMSGRAGRRGKDD-RGICIIMVDEQMEMNTLKDMVLGKPAPLVS 504 (955)
Q Consensus 444 ~~~~--d~---~~~~~~s~~ey~Q~~GRaGR~G~~~-~g~~ii~~~~~~~~~~~~~l~~~~~~~l~s 504 (955)
..+| |. ...+|.+..+|+||+|||||.|.++ .|.|++++.+ +...+++++....+++.+
T Consensus 398 ~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~--d~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 398 LIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE--DLSLLKEILKRPVDPIRA 462 (677)
T ss_dssp SBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT--HHHHHHHHHHSCCCCCCC
T ss_pred ccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc--hHHHHHHHHhcCcchhhh
Confidence 3343 21 1245899999999999999999874 5998888755 345778888888888876
No 38
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.1e-35 Score=352.29 Aligned_cols=323 Identities=13% Similarity=0.105 Sum_probs=223.4
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCC-eEEEEccChhhHHHHHHHHHHh--cC--CeeE
Q 002183 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ-RVIYTSPLKALSNQKYRELHQE--FK--DVGL 148 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~-~vl~l~PtkaLa~Q~~~~l~~~--~~--~vg~ 148 (955)
+++|+|+|.+|++.+..++++++++|||+|||++|+.++...+..+. ++||++|+++|+.|++++|.++ ++ .++.
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 45899999999999988899999999999999999999888876554 9999999999999999999887 43 5777
Q ss_pred EecccccC----CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccC
Q 002183 149 MTGDVTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 149 ~tGd~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
++|+.+.. ..++|+|+||+.+.. .....+.++++||+||||++.+ ..+..++..+++..++++||||++
T Consensus 191 ~~~~~~~~~~~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp CGGGCCTTGGGCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGG
T ss_pred EecCCccccccccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCC
Confidence 88887665 679999999997643 2335578899999999999975 557777788888899999999997
Q ss_pred ChH-HHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccch--hchhhHHHHHHHHHHhhccCCccCCCC
Q 002183 225 NAT-QFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQ--FREDNFVKLQDTFLKQKIGGRRENGKA 301 (955)
Q Consensus 225 n~~-~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~ 301 (955)
+.. +........ + +.. .........-..++.+............... .....+......+....
T Consensus 264 ~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 330 (510)
T 2oca_A 264 DGKANIMQYVGMF-G-EIF-KPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLS---------- 330 (510)
T ss_dssp GCSSCHHHHHHHH-C-SEE-CCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCH----------
T ss_pred CCcccHHHhHHhh-C-CeE-EeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccH----------
Confidence 552 211211111 1 111 1110000000000000000000000110000 00012222111111100
Q ss_pred CCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCc
Q 002183 302 SGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNL 381 (955)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~ 381 (955)
.....+..++......+..++|||++ .+.|+.++..|...+.
T Consensus 331 ----------~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~--------------------------- 372 (510)
T 2oca_A 331 ----------KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYD--------------------------- 372 (510)
T ss_dssp ----------HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCS---------------------------
T ss_pred ----------HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCC---------------------------
Confidence 00111223333333335556677766 8899999999877432
Q ss_pred hhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEc-ccccccCCCCCcEEEEecceeccCCCCcccCHHHH
Q 002183 382 PAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFAT-ETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEY 460 (955)
Q Consensus 382 ~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT-~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey 460 (955)
.+..+||++++.+|+.+++.|++|.++||||| +++++|+|+|++++|| .+|. |.++..|
T Consensus 373 ------------~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi----~~~~----~~s~~~~ 432 (510)
T 2oca_A 373 ------------KVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVV----LAHG----VKSKIIV 432 (510)
T ss_dssp ------------SEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEE----ESSC----CCSCCHH
T ss_pred ------------CeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEE----EeCC----CCCHHHH
Confidence 27899999999999999999999999999999 9999999999999999 7777 7899999
Q ss_pred HHHhccCCCCCCCC
Q 002183 461 IQMSGRAGRRGKDD 474 (955)
Q Consensus 461 ~Q~~GRaGR~G~~~ 474 (955)
+|++||+||.|..+
T Consensus 433 ~Q~~GR~gR~g~~~ 446 (510)
T 2oca_A 433 LQTIGRVLRKHGSK 446 (510)
T ss_dssp HHHHHHHHTTTCCC
T ss_pred HHHHhcccccCCCC
Confidence 99999999999865
No 39
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.2e-34 Score=368.68 Aligned_cols=308 Identities=19% Similarity=0.251 Sum_probs=231.0
Q ss_pred chhhhhcCCCCCCHHHHHHHHHHhc----CC--cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHH
Q 002183 66 NGEMAKTYSFELDPFQRVSVACLER----NE--SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 66 ~~~~~~~~~f~l~~~Q~~ai~~l~~----g~--~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l 139 (955)
...+...+||+++|+|.+|++.+.. |+ +++++||||+|||++|+.++...+..+.+++|++||++|++|+++.|
T Consensus 593 ~~~~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~ 672 (1151)
T 2eyq_A 593 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 672 (1151)
T ss_dssp HHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHH
Confidence 3456678999999999999998754 65 99999999999999999999998889999999999999999999999
Q ss_pred HHhcC----CeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHH
Q 002183 140 HQEFK----DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204 (955)
Q Consensus 140 ~~~~~----~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~ 204 (955)
.+.++ .++.++|..+. +..++|+|+||+.+. ....+.++++||+||||++ |....
T Consensus 673 ~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~-----g~~~~ 742 (1151)
T 2eyq_A 673 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF-----GVRHK 742 (1151)
T ss_dssp HHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS-----CHHHH
T ss_pred HHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhc-----ChHHH
Confidence 99886 56777765432 336899999998764 2345789999999999985 55667
Q ss_pred HHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEec-CCCcccceEEEeecCCCceEEeecccchhchhhHHHH
Q 002183 205 ESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT-DFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKL 283 (955)
Q Consensus 205 ~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~-~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (955)
+.+..++.+.++++||||+.... +...+.... ...++.. .....++..++... .. .. .
T Consensus 743 ~~l~~l~~~~~vl~lSATp~p~~-l~~~~~~~~--~~~~i~~~~~~r~~i~~~~~~~----------~~-----~~---i 801 (1151)
T 2eyq_A 743 ERIKAMRANVDILTLTATPIPRT-LNMAMSGMR--DLSIIATPPARRLAVKTFVREY----------DS-----MV---V 801 (1151)
T ss_dssp HHHHHHHTTSEEEEEESSCCCHH-HHHHHTTTS--EEEECCCCCCBCBCEEEEEEEC----------CH-----HH---H
T ss_pred HHHHHhcCCCCEEEEcCCCChhh-HHHHHhcCC--CceEEecCCCCccccEEEEecC----------CH-----HH---H
Confidence 77777778899999999986432 223332221 1222211 11111222221110 00 00 0
Q ss_pred HHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHH
Q 002183 284 QDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTV 363 (955)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i 363 (955)
...++..+ ..+++++|||+++..|+.++..|.....
T Consensus 802 ---------------------------------~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p--------- 837 (1151)
T 2eyq_A 802 ---------------------------------REAILREI--LRGGQVYYLYNDVENIQKAAERLAELVP--------- 837 (1151)
T ss_dssp ---------------------------------HHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCT---------
T ss_pred ---------------------------------HHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCC---------
Confidence 11122222 1357899999999999999998876311
Q ss_pred HHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEec
Q 002183 364 EQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA 443 (955)
Q Consensus 364 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~ 443 (955)
..+++++||+|++.+|+.++..|++|.++|||||+++++|||+|++++||
T Consensus 838 ----------------------------~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VI-- 887 (1151)
T 2eyq_A 838 ----------------------------EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII-- 887 (1151)
T ss_dssp ----------------------------TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEE--
T ss_pred ----------------------------CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEE--
Confidence 12489999999999999999999999999999999999999999999988
Q ss_pred ceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 444 VKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 444 ~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
.++.. +.+...|+||+||+||.|. .|.|++++.+.
T Consensus 888 --i~~~~---~~~l~~l~Qr~GRvgR~g~--~g~~~ll~~~~ 922 (1151)
T 2eyq_A 888 --IERAD---HFGLAQLHQLRGRVGRSHH--QAYAWLLTPHP 922 (1151)
T ss_dssp --ETTTT---SSCHHHHHHHHTTCCBTTB--CEEEEEEECCG
T ss_pred --EeCCC---CCCHHHHHHHHhccCcCCC--ceEEEEEECCc
Confidence 44442 4577899999999999997 58888887553
No 40
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.2e-35 Score=369.09 Aligned_cols=365 Identities=16% Similarity=0.187 Sum_probs=199.9
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc-----CCeEEEEccChhhHHHHHHHHHHhcC----
Q 002183 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-----KQRVIYTSPLKALSNQKYRELHQEFK---- 144 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-----~~~vl~l~PtkaLa~Q~~~~l~~~~~---- 144 (955)
.++|+|+|.++++.+..|+++++++|||+|||++|.++++..+.. ++++||++|+++|+.|++++|+.+++
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 446999999999999999999999999999999999999888765 78899999999999999999999864
Q ss_pred CeeEEecccccCC-------CCCEEEEeHHHHHHHHhcCCc-cCCccceEEEEccccCCCCCChHHHHHHHHh-------
Q 002183 145 DVGLMTGDVTLSP-------NASCLVMTTEILRGMLYRGSE-VLKEVAWVIFDEIHYMKDRERGVVWEESIIF------- 209 (955)
Q Consensus 145 ~vg~~tGd~~~~~-------~~~IlV~Tpe~L~~~l~~~~~-~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~------- 209 (955)
.++.++|+.+... .++|+|+||++|.+++.++.. .+.++++||+||||++.+.. . +..++..
T Consensus 326 ~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~--~-~~~i~~~~~~~~~~ 402 (936)
T 4a2w_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH--P-YNVLMTRYLEQKFN 402 (936)
T ss_dssp CEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTC--H-HHHHHHHHHHHHHT
T ss_pred eEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCc--c-HHHHHHHHHHHhhc
Confidence 6888999886543 579999999999999887765 68899999999999998753 2 3333221
Q ss_pred -CCCcceEEEeccccC--ChHHHHHHHhhh------cCCCeEEEecCCC--------cccceEEEeecCC-Cce------
Q 002183 210 -LPPAIKMVFLSATMS--NATQFAEWICHL------HKQPCHVVYTDFR--------PTPLQHYVFPVGG-SGL------ 265 (955)
Q Consensus 210 -l~~~~~~v~lSAT~~--n~~~~~~~l~~~------~~~~~~v~~~~~r--------p~pl~~~~~~~~~-~~~------ 265 (955)
..+..++++||||++ +..++.+++..+ .. ...+...... +.|...+...... ...
T Consensus 403 ~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~-~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~ 481 (936)
T 4a2w_A 403 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLD-IQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (936)
T ss_dssp TCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHT-CSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcC-CceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHH
Confidence 145689999999995 222222222211 11 0011111100 1111111110000 000
Q ss_pred -------------EE---e-ecccchhchhhHHHHH--------------------------------------------
Q 002183 266 -------------YL---V-VDEKEQFREDNFVKLQ-------------------------------------------- 284 (955)
Q Consensus 266 -------------~~---~-~~~~~~~~~~~~~~~~-------------------------------------------- 284 (955)
.. + ......+....+....
T Consensus 482 ~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~ 561 (936)
T 4a2w_A 482 NLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (936)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 00 0 0000000000000000
Q ss_pred -------HHHHHhhccCCccCCCCCC------------C--ccCCCCCCCCCcHHHHHHHHHH----cCCCcEEEEEcCh
Q 002183 285 -------DTFLKQKIGGRRENGKASG------------R--MAKGGSGSGGSDIFKIVKMIME----RKFQPVIVFSFSR 339 (955)
Q Consensus 285 -------~~l~~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~~l~~~l~~----~~~~~~IVF~~s~ 339 (955)
..+..........+..... . ...........++..+.+.+.+ ....++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~ 641 (936)
T 4a2w_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (936)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCH
Confidence 0000000000000000000 0 0000001123455566666665 3568999999999
Q ss_pred HHHHHHHHHhccC----CCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHh
Q 002183 340 RECEQHAMSMSKL----DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQ 415 (955)
Q Consensus 340 ~~~~~la~~L~~~----~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~ 415 (955)
+.++.++..|... ++... .+...+...+||+|++.+|..+++.|+
T Consensus 642 ~~ae~L~~~L~~~~~l~~ik~~-------------------------------~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 642 ALVSALKKCMEENPILNYIKPG-------------------------------VLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp HHHHHHHHHHHHCSTTSSCCCE-------------------------------EC-------------------------
T ss_pred HHHHHHHHHHhhCcccccccee-------------------------------EEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 9999999999764 11110 011234567899999999999999999
Q ss_pred c-CCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 416 E-GLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 416 ~-g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
+ |.++|||||+++++|||+|++++|| +||. |.++..|+||+|| ||.+ .|.++++++..
T Consensus 691 ~~g~~~VLVaT~~~~eGIDlp~v~~VI----~yD~----p~s~~~~iQr~GR-GR~~---~g~vi~Li~~~ 749 (936)
T 4a2w_A 691 TSKDNRLLIATSVADEGIDIVQCNLVV----LYEY----SGNVTKMIQVRGR-GRAA---GSKCILVTSKT 749 (936)
T ss_dssp ---CCSEEEEECC------CCCCSEEE----EESC----CSCSHHHHCC-----------CCCEEEEESCH
T ss_pred ccCCeeEEEEeCchhcCCcchhCCEEE----EeCC----CCCHHHHHHhcCC-CCCC---CCEEEEEEeCC
Confidence 9 9999999999999999999999999 8998 9999999999999 9983 47788777665
No 41
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2.6e-34 Score=341.46 Aligned_cols=356 Identities=15% Similarity=0.099 Sum_probs=232.4
Q ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----Cee
Q 002183 72 TYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DVG 147 (955)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~vg 147 (955)
.+||.|+|+|..+++.+..|+ ++.|+||+|||++|.+|++.....|..++|++||++||.|.++.+..++. .++
T Consensus 79 ~lG~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~ 156 (844)
T 1tf5_A 79 VTGMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVG 156 (844)
T ss_dssp HHSCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HcCCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 579999999999999999998 99999999999999999985555688899999999999999988877654 788
Q ss_pred EEecccccC-----CCCCEEEEeHHHH-HHHHhc------CCccCCccceEEEEccccCC-CCCC---------------
Q 002183 148 LMTGDVTLS-----PNASCLVMTTEIL-RGMLYR------GSEVLKEVAWVIFDEIHYMK-DRER--------------- 199 (955)
Q Consensus 148 ~~tGd~~~~-----~~~~IlV~Tpe~L-~~~l~~------~~~~l~~l~~vIiDEaH~l~-d~~r--------------- 199 (955)
+++|+.+.. ..++|+|+||++| .+++.. +...++.+.++|+||||.|+ |..+
T Consensus 157 ~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~ 236 (844)
T 1tf5_A 157 LNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKL 236 (844)
T ss_dssp ECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHH
T ss_pred EEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhH
Confidence 899986532 2589999999999 444432 23457899999999999987 7643
Q ss_pred hHHHHHHHHhCC---------CcceEE-----------------EeccccCCh-HHHHHHHhh--h-cCCCeEEEe----
Q 002183 200 GVVWEESIIFLP---------PAIKMV-----------------FLSATMSNA-TQFAEWICH--L-HKQPCHVVY---- 245 (955)
Q Consensus 200 g~~~~~ii~~l~---------~~~~~v-----------------~lSAT~~n~-~~~~~~l~~--~-~~~~~~v~~---- 245 (955)
...+..++..++ +..|++ ++|||.+.. ..+...+.. + ..+.-+++.
T Consensus 237 ~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v 316 (844)
T 1tf5_A 237 YVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQV 316 (844)
T ss_dssp HHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEE
T ss_pred HHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCee
Confidence 345667777786 367777 899997521 112222111 1 111222221
Q ss_pred ---cC--CCc-------------------ccc-------eEEE---eecCCCceEEeecccchhchhhHHHHHHHHHHhh
Q 002183 246 ---TD--FRP-------------------TPL-------QHYV---FPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQK 291 (955)
Q Consensus 246 ---~~--~rp-------------------~pl-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 291 (955)
.. .|. +.+ .... |..-...+.-..... .-....+...+. -..
T Consensus 317 ~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa-~te~~e~~~iY~---l~v 392 (844)
T 1tf5_A 317 VIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTA-KTEEEEFRNIYN---MQV 392 (844)
T ss_dssp EEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCC-GGGHHHHHHHHC---CCE
T ss_pred EEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCccc-chhHHHHHHHhC---Cce
Confidence 00 010 000 0000 000000011111111 001112211110 000
Q ss_pred ccCCccCCCCCCCccCCC--CCCCCCcHHHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHH
Q 002183 292 IGGRRENGKASGRMAKGG--SGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVF 367 (955)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~ 367 (955)
..-|. . ....+..... ......+...+++.+.. ..+.|+||||+|+..|+.++..|...++.
T Consensus 393 v~IPt-n-~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~------------ 458 (844)
T 1tf5_A 393 VTIPT-N-RPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIP------------ 458 (844)
T ss_dssp EECCC-S-SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCC------------
T ss_pred EEecC-C-CCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCC------------
Confidence 00000 0 0000000000 00112234455555543 24579999999999999999999987776
Q ss_pred HHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC--------CcEE
Q 002183 368 QNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP--------AKTV 439 (955)
Q Consensus 368 ~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip--------~~~v 439 (955)
..++||++.+.+|+.+...|+.| .|+|||++++||+|++ +..+
T Consensus 459 ---------------------------~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~ 509 (844)
T 1tf5_A 459 ---------------------------HQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLA 509 (844)
T ss_dssp ---------------------------CEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEE
T ss_pred ---------------------------EEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcE
Confidence 46899999888888777777666 6999999999999999 7899
Q ss_pred EEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCC
Q 002183 440 VFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 440 Vi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~ 484 (955)
|| +||. |.+...|.||+||+||.|..|.+..|+...+
T Consensus 510 VI----n~d~----p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 510 VV----GTER----HESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp EE----ESSC----CSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred EE----EecC----CCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 99 8888 8999999999999999999655555555444
No 42
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=8.1e-35 Score=337.73 Aligned_cols=288 Identities=15% Similarity=0.103 Sum_probs=200.9
Q ss_pred CCHHHHHHHHHHhcCCcE-EEEcCCCCchHHHHHHHHHHH-HhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccc-
Q 002183 77 LDPFQRVSVACLERNESV-LVSAHTSAGKTAVAEYAIAMA-FRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV- 153 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~v-lv~apTGsGKTl~~~~~i~~~-l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~- 153 (955)
++|+|+ +++.+.+++++ +++||||||||++|++|++.. +..+.+++|++||++|++|+++.+... .++...+..
T Consensus 5 ~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~ 81 (451)
T 2jlq_A 5 GEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL--PIRYQTPAVK 81 (451)
T ss_dssp CSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECCTTCS
T ss_pred CCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc--eeeeeecccc
Confidence 788885 78888877776 999999999999999988754 456789999999999999999988522 343333222
Q ss_pred -ccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHH-hCCCcceEEEeccccCChHHHHH
Q 002183 154 -TLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII-FLPPAIKMVFLSATMSNATQFAE 231 (955)
Q Consensus 154 -~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~-~l~~~~~~v~lSAT~~n~~~~~~ 231 (955)
...+...|.++|++.+.+.+.+. ..+.++++||+||||++ +..+...+..+.. ..+++.|+++||||+++... .
T Consensus 82 ~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~--~ 157 (451)
T 2jlq_A 82 SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD--P 157 (451)
T ss_dssp CCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC--S
T ss_pred ccCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccch--h
Confidence 22345679999999998877655 45789999999999987 4333333333322 24567999999999975311 1
Q ss_pred HHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCC
Q 002183 232 WICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSG 311 (955)
Q Consensus 232 ~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (955)
+ ....+..+... ++.|.. .+
T Consensus 158 ~---~~~~~~~~~~~--~~~p~~-------------------~~------------------------------------ 177 (451)
T 2jlq_A 158 F---PQSNSPIEDIE--REIPER-------------------SW------------------------------------ 177 (451)
T ss_dssp S---CCCSSCEEEEE--CCCCSS-------------------CC------------------------------------
T ss_pred h---hcCCCceEecC--ccCCch-------------------hh------------------------------------
Confidence 1 01111111100 111100 00
Q ss_pred CCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHh
Q 002183 312 SGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLL 391 (955)
Q Consensus 312 ~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l 391 (955)
. .+...+.+ ..+++||||+|++.|+.++..|...++.
T Consensus 178 ---~---~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g~~------------------------------------ 214 (451)
T 2jlq_A 178 ---N---TGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKR------------------------------------ 214 (451)
T ss_dssp ---S---SSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHTTTCC------------------------------------
T ss_pred ---H---HHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcCCe------------------------------------
Confidence 0 01112222 3468999999999999999999875443
Q ss_pred hcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecce----e--ccCCC------CcccCHHH
Q 002183 392 KRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK----K--WDGDS------HRYIGSGE 459 (955)
Q Consensus 392 ~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~----~--~d~~~------~~~~s~~e 459 (955)
+..+||++ ++.+++.|++|.++|||||+++++|||+|+ ++||+.+. . |++.. ..|.+..+
T Consensus 215 ---~~~lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~ 286 (451)
T 2jlq_A 215 ---VIQLSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPAS 286 (451)
T ss_dssp ---EEEECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHH
T ss_pred ---EEECCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHH
Confidence 67788875 467899999999999999999999999999 98984331 1 11111 14889999
Q ss_pred HHHHhccCCCCCCCCceEEEEEeC
Q 002183 460 YIQMSGRAGRRGKDDRGICIIMVD 483 (955)
Q Consensus 460 y~Q~~GRaGR~G~~~~g~~ii~~~ 483 (955)
|+||+|||||.|.+ .|.++++..
T Consensus 287 y~Qr~GRaGR~g~~-~g~~~~~~~ 309 (451)
T 2jlq_A 287 AAQRRGRIGRNPAQ-EDDQYVFSG 309 (451)
T ss_dssp HHHHHTTSSCCTTC-CCEEEEECS
T ss_pred HHHhccccCCCCCC-CccEEEEeC
Confidence 99999999999973 366666653
No 43
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=5.4e-34 Score=348.95 Aligned_cols=324 Identities=18% Similarity=0.203 Sum_probs=226.5
Q ss_pred CCCCCHHHHHHHHHH-hcCCcEEEEcCCCCchHHHHHHHHHHHH---hc--CCeEEEEccChhhHHHHHHHHHHhcC-Ce
Q 002183 74 SFELDPFQRVSVACL-ERNESVLVSAHTSAGKTAVAEYAIAMAF---RD--KQRVIYTSPLKALSNQKYRELHQEFK-DV 146 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l-~~g~~vlv~apTGsGKTl~~~~~i~~~l---~~--~~~vl~l~PtkaLa~Q~~~~l~~~~~-~v 146 (955)
+..|.+.|+++|+.+ ..+++++++||||||||+. +|++... .. +.+++|++|+++|+.|+++.+...++ .+
T Consensus 91 ~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v 168 (773)
T 2xau_A 91 RELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKL 168 (773)
T ss_dssp TTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCB
T ss_pred hcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCch
Confidence 445888899998775 6678899999999999993 4433221 22 67899999999999999999988765 44
Q ss_pred eEEec-----ccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEcccc-CCCCCCh-HHHHHHHHhCCCcceEEEe
Q 002183 147 GLMTG-----DVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHY-MKDRERG-VVWEESIIFLPPAIKMVFL 219 (955)
Q Consensus 147 g~~tG-----d~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~-l~d~~rg-~~~~~ii~~l~~~~~~v~l 219 (955)
+...| +.....+.+|+|+||+++...+... ..+.++++||+||+|. ..+.... ..+..+. ...++.|++++
T Consensus 169 ~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~-~~~~~~~iIl~ 246 (773)
T 2xau_A 169 GEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLLKQVV-KRRPDLKIIIM 246 (773)
T ss_dssp TTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHH-HHCTTCEEEEE
T ss_pred hheecceeccccccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHHHHHH-HhCCCceEEEE
Confidence 33333 2233467899999999998877654 3588999999999995 4432111 1222333 33457899999
Q ss_pred ccccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCC
Q 002183 220 SATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENG 299 (955)
Q Consensus 220 SAT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 299 (955)
|||+ +...+++|++. ..++....+..|+..+..... ... +..
T Consensus 247 SAT~-~~~~l~~~~~~-----~~vi~v~gr~~pv~~~~~~~~----------~~~-----~~~----------------- 288 (773)
T 2xau_A 247 SATL-DAEKFQRYFND-----APLLAVPGRTYPVELYYTPEF----------QRD-----YLD----------------- 288 (773)
T ss_dssp ESCS-CCHHHHHHTTS-----CCEEECCCCCCCEEEECCSSC----------CSC-----HHH-----------------
T ss_pred eccc-cHHHHHHHhcC-----CCcccccCcccceEEEEecCC----------chh-----HHH-----------------
Confidence 9999 56678888752 334445556666654332111 000 000
Q ss_pred CCCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccC
Q 002183 300 KASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDR 379 (955)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~ 379 (955)
..+..++..+.....+++||||++++.|+.++..|.... ..... ..
T Consensus 289 ---------------~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~----------~~l~~------~~--- 334 (773)
T 2xau_A 289 ---------------SAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEG----------DQLVR------EE--- 334 (773)
T ss_dssp ---------------HHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHH----------HHHHH------HH---
T ss_pred ---------------HHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHH----------Hhhcc------cc---
Confidence 011223333334456899999999999999999886410 00000 00
Q ss_pred CchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHh-----cCCccEEEEcccccccCCCCCcEEEEecce----eccCC
Q 002183 380 NLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQ-----EGLVKALFATETFAMGLNMPAKTVVFTAVK----KWDGD 450 (955)
Q Consensus 380 ~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~-----~g~i~VLvaT~~la~Gidip~~~vVi~~~~----~~d~~ 450 (955)
......+..+||+|++.+|..+++.|+ +|.++|||||+++++|||+|++++||+... .||+.
T Consensus 335 ---------~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~ 405 (773)
T 2xau_A 335 ---------GCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPR 405 (773)
T ss_dssp ---------CCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETT
T ss_pred ---------cCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccc
Confidence 001123889999999999999999999 999999999999999999999999997543 36664
Q ss_pred CC------cccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 451 SH------RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 451 ~~------~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
.. .|.+..+|+||+|||||.+ .|.||.++++.
T Consensus 406 ~g~~~L~~~p~S~~s~~QR~GRaGR~~---~G~~~~l~~~~ 443 (773)
T 2xau_A 406 IRVESLLVSPISKASAQQRAGRAGRTR---PGKCFRLYTEE 443 (773)
T ss_dssp TTEEEEEEEECCHHHHHHHHHGGGSSS---SEEEEESSCHH
T ss_pred cCccccccccCCHHHHHhhccccCCCC---CCEEEEEecHH
Confidence 22 2789999999999999983 59999998653
No 44
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=2.5e-34 Score=339.57 Aligned_cols=288 Identities=18% Similarity=0.117 Sum_probs=210.8
Q ss_pred hhcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-CeeE
Q 002183 70 AKTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGL 148 (955)
Q Consensus 70 ~~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~ 148 (955)
..+..+.+.++|+++++.+..+++++++||||||||++|.++++. ++.+++|++|||+|+.|+++.+.+.++ .++.
T Consensus 211 ~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~ 287 (666)
T 3o8b_A 211 ETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNI 287 (666)
T ss_dssp HHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEE
T ss_pred hhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeE
Confidence 334445566777777777889999999999999999999888765 477999999999999999999988877 8899
Q ss_pred EecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcce--EEEeccccCCh
Q 002183 149 MTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIK--MVFLSATMSNA 226 (955)
Q Consensus 149 ~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~--~v~lSAT~~n~ 226 (955)
.+|+.....+++|+|+||++| +.+....++++++|||||||++ +.++...+..++..++...+ ++++|||+++.
T Consensus 288 ~vG~~~~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~ 363 (666)
T 3o8b_A 288 RTGVRTITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLATATPPGS 363 (666)
T ss_dssp ECSSCEECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC
T ss_pred EECcEeccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEEECCCCCcc
Confidence 999988889999999999998 3455566788999999999865 44555567777877876555 78889999863
Q ss_pred HHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCcc
Q 002183 227 TQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMA 306 (955)
Q Consensus 227 ~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 306 (955)
.. ...|. .+.+.......+... ...
T Consensus 364 i~------------------~~~p~--i~~v~~~~~~~i~~~-~~~---------------------------------- 388 (666)
T 3o8b_A 364 VT------------------VPHPN--IEEVALSNTGEIPFY-GKA---------------------------------- 388 (666)
T ss_dssp CC------------------CCCTT--EEEEECBSCSSEEET-TEE----------------------------------
T ss_pred cc------------------cCCcc--eEEEeecccchhHHH-Hhh----------------------------------
Confidence 10 00010 000000000000000 000
Q ss_pred CCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHh
Q 002183 307 KGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIEL 386 (955)
Q Consensus 307 ~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~ 386 (955)
.. +.....+++||||++++.|+.++..|...++.
T Consensus 389 --------~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~------------------------------- 422 (666)
T 3o8b_A 389 --------IP-------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGIN------------------------------- 422 (666)
T ss_dssp --------EC-------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTCC-------------------------------
T ss_pred --------hh-------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCCc-------------------------------
Confidence 00 01114578999999999999999999876544
Q ss_pred HHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecc------eecc--CCC-----Cc
Q 002183 387 MLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV------KKWD--GDS-----HR 453 (955)
Q Consensus 387 ~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~------~~~d--~~~-----~~ 453 (955)
+..+||+|++.+ |+++..+|||||+++++|||+| +++||+.. .+|| +.. ..
T Consensus 423 --------v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~ 486 (666)
T 3o8b_A 423 --------AVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTV 486 (666)
T ss_dssp --------EEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEE
T ss_pred --------EEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccC
Confidence 789999999875 5567779999999999999998 88887432 2566 110 13
Q ss_pred ccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 454 YIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 454 ~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
|.+..+|+||+||||| |.. |. +.++++.
T Consensus 487 P~s~~syiQRiGRtGR-g~~--G~-i~lvt~~ 514 (666)
T 3o8b_A 487 PQDAVSRSQRRGRTGR-GRR--GI-YRFVTPG 514 (666)
T ss_dssp ECBHHHHHHHHTTBCS-SSC--EE-EEESCCC
T ss_pred cCCHHHHHHHhccCCC-CCC--CE-EEEEecc
Confidence 8899999999999999 764 66 6666543
No 45
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.8e-34 Score=340.96 Aligned_cols=285 Identities=13% Similarity=0.073 Sum_probs=209.5
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccc--
Q 002183 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV-- 153 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~-- 153 (955)
++|+|+.+++.+.+|++++++||||||||++|.+|++..+ ..+.++||++||++|+.|+++.+.. ..++...+..
T Consensus 172 ~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~--~~v~~~~~~l~~ 249 (618)
T 2whx_A 172 GEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRG--LPIRYQTPAVKS 249 (618)
T ss_dssp CCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT--SCEEECCTTSSC
T ss_pred CCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcC--CceeEeccccee
Confidence 7788888899999999999999999999999999988765 4577999999999999999988863 2455322211
Q ss_pred ccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCC-CcceEEEeccccCChHHHHHH
Q 002183 154 TLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP-PAIKMVFLSATMSNATQFAEW 232 (955)
Q Consensus 154 ~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~-~~~~~v~lSAT~~n~~~~~~~ 232 (955)
...+...+.++|.+.+...+... ..+.++++||+||||++ +.++...+..++..++ ++.|+++||||+++... .+
T Consensus 250 ~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~--~~ 325 (618)
T 2whx_A 250 DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD--PF 325 (618)
T ss_dssp CCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCC--SS
T ss_pred ccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhh--hh
Confidence 22345678889999988766655 34889999999999998 5556666777776665 68999999999985421 11
Q ss_pred HhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCC
Q 002183 233 ICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGS 312 (955)
Q Consensus 233 l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (955)
.. ..+. ...+. .. .. ...
T Consensus 326 ~~---~~~~------------~~~v~-~~-------~~-~~~-------------------------------------- 343 (618)
T 2whx_A 326 PQ---SNSP------------IEDIE-RE-------IP-ERS-------------------------------------- 343 (618)
T ss_dssp CC---CSSC------------EEEEE-CC-------CC-SSC--------------------------------------
T ss_pred hc---cCCc------------eeeec-cc-------CC-HHH--------------------------------------
Confidence 00 0000 00000 00 00 000
Q ss_pred CCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhh
Q 002183 313 GGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLK 392 (955)
Q Consensus 313 ~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~ 392 (955)
.. .++..+.+ ...++||||+|++.|+.++..|...++.
T Consensus 344 -~~---~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~------------------------------------- 381 (618)
T 2whx_A 344 -WN---TGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKR------------------------------------- 381 (618)
T ss_dssp -CS---SSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTCC-------------------------------------
T ss_pred -HH---HHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcCCc-------------------------------------
Confidence 00 11222233 3578999999999999999999875543
Q ss_pred cCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecc----------------eeccCCCCcccC
Q 002183 393 RGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV----------------KKWDGDSHRYIG 456 (955)
Q Consensus 393 ~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~----------------~~~d~~~~~~~s 456 (955)
+..+||+ +|+.+++.|++|.++|||||+++++|||+| +++||... .+||. |.+
T Consensus 382 --v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~----P~s 450 (618)
T 2whx_A 382 --VIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPI----PVT 450 (618)
T ss_dssp --EEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEE----ECC
T ss_pred --EEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccc----cCC
Confidence 6788984 788899999999999999999999999998 77775433 24455 899
Q ss_pred HHHHHHHhccCCCCCCCCceEEEEEeC
Q 002183 457 SGEYIQMSGRAGRRGKDDRGICIIMVD 483 (955)
Q Consensus 457 ~~ey~Q~~GRaGR~G~~~~g~~ii~~~ 483 (955)
..+|+||+|||||.|.. .|.++++.+
T Consensus 451 ~~~yiQR~GRaGR~g~~-~G~ai~l~~ 476 (618)
T 2whx_A 451 PASAAQRRGRIGRNPAQ-EDDQYVFSG 476 (618)
T ss_dssp HHHHHHHHTTSSCCTTC-CCEEEEECS
T ss_pred HHHHHHhccccCCCCCC-CCeEEEEcc
Confidence 99999999999999742 477777775
No 46
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.1e-32 Score=326.45 Aligned_cols=350 Identities=16% Similarity=0.112 Sum_probs=211.3
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----Ce
Q 002183 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~v 146 (955)
..+|..|+|+|..+++.+..|+ ++.++||+|||++|.+|++.....|..++|++||++||.|.+..+..++. .+
T Consensus 69 R~lg~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v 146 (853)
T 2fsf_A 69 RVFGMRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTV 146 (853)
T ss_dssp HHHSCCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHcCCCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 3478899999999999999998 99999999999999999987666788999999999999999988887654 78
Q ss_pred eEEecccccC-----CCCCEEEEeHHHH-HHHHhcC------CccCCccceEEEEccccCC-CCCC--------------
Q 002183 147 GLMTGDVTLS-----PNASCLVMTTEIL-RGMLYRG------SEVLKEVAWVIFDEIHYMK-DRER-------------- 199 (955)
Q Consensus 147 g~~tGd~~~~-----~~~~IlV~Tpe~L-~~~l~~~------~~~l~~l~~vIiDEaH~l~-d~~r-------------- 199 (955)
++++|+.+.. ..++|+|+||++| .+++..+ ...++++.++|+||||.|+ |..+
T Consensus 147 ~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~ 226 (853)
T 2fsf_A 147 GINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSE 226 (853)
T ss_dssp EECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC------
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchh
Confidence 8899987532 2589999999999 6666543 2456899999999999988 5543
Q ss_pred -hHHHHHHHHhCCC--------------------cceEE------------------------EeccccCCh-HHHHHHH
Q 002183 200 -GVVWEESIIFLPP--------------------AIKMV------------------------FLSATMSNA-TQFAEWI 233 (955)
Q Consensus 200 -g~~~~~ii~~l~~--------------------~~~~v------------------------~lSAT~~n~-~~~~~~l 233 (955)
...+..++..+++ ..|++ ++|||.+.. ..+...+
T Consensus 227 ~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al 306 (853)
T 2fsf_A 227 MYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAAL 306 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHH
Confidence 2345566666653 34543 789986531 1111100
Q ss_pred hh---hcCCCeE------------------------------------EEecCCCcccceEEEe---------ecCCCce
Q 002183 234 CH---LHKQPCH------------------------------------VVYTDFRPTPLQHYVF---------PVGGSGL 265 (955)
Q Consensus 234 ~~---~~~~~~~------------------------------------v~~~~~rp~pl~~~~~---------~~~~~~~ 265 (955)
.. +..+.-+ +...... ..+....+ ..+..+.
T Consensus 307 ~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~-~tla~It~qnyfr~Y~kl~GmTGT 385 (853)
T 2fsf_A 307 RAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNEN-QTLASITFQNYFRLYEKLAGMTGT 385 (853)
T ss_dssp --------------------------------------------------CCCCC-EEEEEEEHHHHHTTSSEEEEEECT
T ss_pred HHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccc-cccceeehHHHHhhhhhhhcCCCC
Confidence 00 0000000 0000000 00000000 0000000
Q ss_pred EEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCC--CCCCCCcHHHHHHHHHH--cCCCcEEEEEcChHH
Q 002183 266 YLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGG--SGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRE 341 (955)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~ 341 (955)
. ..+. ..|.+.+. -....-|. . .+..+..... ......++..+++.+.. ..+.|+||||.|+..
T Consensus 386 a--~te~-----~ef~~iY~---l~vv~IPt-n-~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~ 453 (853)
T 2fsf_A 386 A--DTEA-----FEFSSIYK---LDTVVVPT-N-RPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEK 453 (853)
T ss_dssp T--CCCH-----HHHHHHHC---CEEEECCC-S-SCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHH
T ss_pred c--hhHH-----HHHHHHhC---CcEEEcCC-C-CCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHH
Confidence 0 0000 01111110 00000000 0 0000000000 00112234455665543 356799999999999
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccE
Q 002183 342 CEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKA 421 (955)
Q Consensus 342 ~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~V 421 (955)
++.++..|...++. ..++||++.+.+++.+...|+.| .|
T Consensus 454 se~Ls~~L~~~gi~---------------------------------------~~vLnak~~~rEa~iia~agr~G--~V 492 (853)
T 2fsf_A 454 SELVSNELTKAGIK---------------------------------------HNVLNAKFHANEAAIVAQAGYPA--AV 492 (853)
T ss_dssp HHHHHHHHHHTTCC---------------------------------------CEECCTTCHHHHHHHHHTTTSTT--CE
T ss_pred HHHHHHHHHHCCCC---------------------------------------EEEecCChhHHHHHHHHhcCCCC--eE
Confidence 99999999987776 46899999988998899999988 69
Q ss_pred EEEcccccccCCCCCc-------------------------------------EEEEecceeccCCCCcccCHHHHHHHh
Q 002183 422 LFATETFAMGLNMPAK-------------------------------------TVVFTAVKKWDGDSHRYIGSGEYIQMS 464 (955)
Q Consensus 422 LvaT~~la~Gidip~~-------------------------------------~vVi~~~~~~d~~~~~~~s~~ey~Q~~ 464 (955)
+|||++++||+|++.. .+|| +||. |.+...|.||+
T Consensus 493 tIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI----~te~----pes~riy~qr~ 564 (853)
T 2fsf_A 493 TIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHII----GTER----HESRRIDNQLR 564 (853)
T ss_dssp EEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEE----ESSC----CSSHHHHHHHH
T ss_pred EEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEE----EccC----CCCHHHHHhhc
Confidence 9999999999999973 6899 7777 88999999999
Q ss_pred ccCCCCCCCCceEEEEEeCC
Q 002183 465 GRAGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 465 GRaGR~G~~~~g~~ii~~~~ 484 (955)
||+||.|..|.+..|+...+
T Consensus 565 GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 565 GRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp TTSSGGGCCEEEEEEEETTS
T ss_pred cccccCCCCeeEEEEecccH
Confidence 99999999655555554443
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.6e-33 Score=334.44 Aligned_cols=288 Identities=17% Similarity=0.139 Sum_probs=197.5
Q ss_pred CCCHHHH-----HHHHHHh------cCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhc
Q 002183 76 ELDPFQR-----VSVACLE------RNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 76 ~l~~~Q~-----~ai~~l~------~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
.|+++|+ ++|+.+. .|++++++||||||||++|++|++..+ .++.+++|++||++|+.|+++.+..+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~- 293 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGL- 293 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcC-
Confidence 4889999 9998877 899999999999999999999998764 56789999999999999999988754
Q ss_pred CCeeEEecccc--cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC-CCcceEEEec
Q 002183 144 KDVGLMTGDVT--LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLS 220 (955)
Q Consensus 144 ~~vg~~tGd~~--~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l-~~~~~~v~lS 220 (955)
.++..++... ..++.-+-+++.+.+...+... ..+.++++||+||||++ +..+......+...+ +...|+++||
T Consensus 294 -~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~S 370 (673)
T 2wv9_A 294 -PVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMT 370 (673)
T ss_dssp -CCEECCC---CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred -CeeeecccccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEc
Confidence 3343333221 1233445667777776555543 45889999999999998 221112222222333 3679999999
Q ss_pred cccCChHHHHHHHhhhcCCCeEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCC
Q 002183 221 ATMSNATQFAEWICHLHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGK 300 (955)
Q Consensus 221 AT~~n~~~~~~~l~~~~~~~~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 300 (955)
||++.... .+.. ...|+...... .... .
T Consensus 371 AT~~~~i~------~~~~----------~~~~i~~v~~~---------~~~~-~-------------------------- 398 (673)
T 2wv9_A 371 ATPPGTSD------PFPD----------TNSPVHDVSSE---------IPDR-A-------------------------- 398 (673)
T ss_dssp SSCTTCCC------SSCC----------CSSCEEEEECC---------CCSS-C--------------------------
T ss_pred CCCChhhh------hhcc----------cCCceEEEeee---------cCHH-H--------------------------
Confidence 99974310 0000 01111111000 0000 0
Q ss_pred CCCCccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCC
Q 002183 301 ASGRMAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRN 380 (955)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~ 380 (955)
... ++..+.+ ...++||||++++.|+.++..|...++.
T Consensus 399 ------------~~~----~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~------------------------- 436 (673)
T 2wv9_A 399 ------------WSS----GFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKR------------------------- 436 (673)
T ss_dssp ------------CSS----CCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCC-------------------------
T ss_pred ------------HHH----HHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCe-------------------------
Confidence 000 1122222 4579999999999999999999875443
Q ss_pred chhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEeccee------ccCC----
Q 002183 381 LPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKK------WDGD---- 450 (955)
Q Consensus 381 ~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~------~d~~---- 450 (955)
+..+||+ +|+.+++.|++|.++|||||+++++|||+| +++||+.... ||..
T Consensus 437 --------------v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ 497 (673)
T 2wv9_A 437 --------------VIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVI 497 (673)
T ss_dssp --------------EEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEE
T ss_pred --------------EEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccce
Confidence 7889994 899999999999999999999999999999 8888853211 1211
Q ss_pred --CCcccCHHHHHHHhccCCCC-CCCCceEEEEEe
Q 002183 451 --SHRYIGSGEYIQMSGRAGRR-GKDDRGICIIMV 482 (955)
Q Consensus 451 --~~~~~s~~ey~Q~~GRaGR~-G~~~~g~~ii~~ 482 (955)
-..|.++.+|+||+|||||. |. .|.|++++
T Consensus 498 ll~d~P~s~~~y~Qr~GRaGR~~g~--~G~ai~l~ 530 (673)
T 2wv9_A 498 LSVPSAITSASAAQRRGRVGRNPSQ--IGDEYHYG 530 (673)
T ss_dssp ECCSEECCHHHHHHHHTTSSCCSSC--CCEEEEEC
T ss_pred ecccCCCCHHHHHHHhhccCCCCCC--CCEEEEEE
Confidence 12389999999999999999 55 46777774
No 48
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=3e-32 Score=314.06 Aligned_cols=271 Identities=16% Similarity=0.132 Sum_probs=186.6
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHH-HHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccc--cCCCCCEEEEeH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIA-MAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT--LSPNASCLVMTT 166 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~-~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~--~~~~~~IlV~Tp 166 (955)
+|++++++||||||||++|++|++ ..+.++.+++|++||++|+.|+++.+. .-.+++.+|... ..++.-+.++|.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQSERTGNEIVDFMCH 78 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC---------CCCSEEEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCccccCCCCceEEEEch
Confidence 478999999999999999999888 556778899999999999999998886 226777777533 234567778899
Q ss_pred HHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh-CCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEe
Q 002183 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF-LPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVY 245 (955)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~-l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~ 245 (955)
+.+...+.. ...+.++++||+||+|++. ..+......+... .+++.|+++||||+++... .+.
T Consensus 79 ~~l~~~l~~-~~~~~~l~~vViDEaH~~~-~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~------~~~-------- 142 (431)
T 2v6i_A 79 STFTMKLLQ-GVRVPNYNLYIMDEAHFLD-PASVAARGYIETRVSMGDAGAIFMTATPPGTTE------AFP-------- 142 (431)
T ss_dssp HHHHHHHHH-TCCCCCCSEEEEESTTCCS-HHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCC------SSC--------
T ss_pred HHHHHHHhc-CccccCCCEEEEeCCccCC-ccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchh------hhc--------
Confidence 988776665 4458899999999999973 2111222222222 2568999999999985210 000
Q ss_pred cCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHHHH
Q 002183 246 TDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKMIM 325 (955)
Q Consensus 246 ~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 325 (955)
.. ..|+...... ... .... .++..+.
T Consensus 143 ~~--~~~i~~~~~~---------~~~----------------------------------------~~~~---~~~~~l~ 168 (431)
T 2v6i_A 143 PS--NSPIIDEETR---------IPD----------------------------------------KAWN---SGYEWIT 168 (431)
T ss_dssp CC--SSCCEEEECC---------CCS----------------------------------------SCCS---SCCHHHH
T ss_pred CC--CCceeecccc---------CCH----------------------------------------HHHH---HHHHHHH
Confidence 00 0111110000 000 0000 1112222
Q ss_pred HcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHH
Q 002183 326 ERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPV 405 (955)
Q Consensus 326 ~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~ 405 (955)
+ ..+++||||++++.|+.++..|...++. ++.+||+
T Consensus 169 ~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~---------------------------------------v~~lhg~---- 204 (431)
T 2v6i_A 169 E-FDGRTVWFVHSIKQGAEIGTCLQKAGKK---------------------------------------VLYLNRK---- 204 (431)
T ss_dssp S-CSSCEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------EEEESTT----
T ss_pred c-CCCCEEEEeCCHHHHHHHHHHHHHcCCe---------------------------------------EEEeCCc----
Confidence 2 3468999999999999999999775332 7899997
Q ss_pred HHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEec-------------ceeccCCCCcccCHHHHHHHhccCCCCCC
Q 002183 406 IKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTA-------------VKKWDGDSHRYIGSGEYIQMSGRAGRRGK 472 (955)
Q Consensus 406 ~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~-------------~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~ 472 (955)
+|+.+++.|++|.++|||||+++++|||+| +..||.. ...|+. |.+..+|+||+||+||.|.
T Consensus 205 ~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~----p~~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 205 TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPI----AITPASAAQRRGRIGRNPE 279 (431)
T ss_dssp THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEE----ECCHHHHHHHHTTSSCCTT
T ss_pred cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccc----cCCHHHHHHhhhccCCCCC
Confidence 688899999999999999999999999999 4444322 225565 8899999999999999985
Q ss_pred CCceEEEEEe
Q 002183 473 DDRGICIIMV 482 (955)
Q Consensus 473 ~~~g~~ii~~ 482 (955)
. .|.++++.
T Consensus 280 ~-~~~~~~~~ 288 (431)
T 2v6i_A 280 K-LGDIYAYS 288 (431)
T ss_dssp C-CCCEEEEC
T ss_pred C-CCeEEEEc
Confidence 4 34455554
No 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.7e-32 Score=316.75 Aligned_cols=272 Identities=18% Similarity=0.150 Sum_probs=179.9
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccc--cCCCCCEEEE
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT--LSPNASCLVM 164 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~--~~~~~~IlV~ 164 (955)
+.+|++++++||||||||++|++|++..+ .++.+++|++||++|+.|+++.+... .++..++... ..++.-+-.+
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~--~v~~~~~~~~~v~Tp~~l~~~l 82 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGL--DVKFHTQAFSAHGSGREVIDAM 82 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEEESSCCCCCCCSSCCEEEE
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcC--CeEEecccceeccCCccceeee
Confidence 56899999999999999999999988855 45679999999999999999988743 4444444321 1222233445
Q ss_pred eHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC-CCcceEEEeccccCChHHHHHHHhhhcCCCeEE
Q 002183 165 TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL-PPAIKMVFLSATMSNATQFAEWICHLHKQPCHV 243 (955)
Q Consensus 165 Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l-~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v 243 (955)
+.+.+...+.. ...+.++++||+||||++ +..+......+...+ +.+.|+++||||++.... .+. .
T Consensus 83 ~~~~l~~~~~~-~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~--~~~----~----- 149 (440)
T 1yks_A 83 CHATLTYRMLE-PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSD--EFP----H----- 149 (440)
T ss_dssp EHHHHHHHHTS-SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC--SSC----C-----
T ss_pred cccchhHhhhC-cccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhh--hhh----h-----
Confidence 55555444333 244789999999999998 433322222222222 467999999999974311 000 0
Q ss_pred EecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHHHH
Q 002183 244 VYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIVKM 323 (955)
Q Consensus 244 ~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 323 (955)
.+.++..... .+... .... ++..
T Consensus 150 -----~~~~~~~~~~---------~~~~~---------------------------------------~~~~----~~~~ 172 (440)
T 1yks_A 150 -----SNGEIEDVQT---------DIPSE---------------------------------------PWNT----GHDW 172 (440)
T ss_dssp -----CSSCEEEEEC---------CCCSS---------------------------------------CCSS----SCHH
T ss_pred -----cCCCeeEeee---------ccChH---------------------------------------HHHH----HHHH
Confidence 0111111000 00000 0001 1122
Q ss_pred HHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCC
Q 002183 324 IMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLL 403 (955)
Q Consensus 324 l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~ 403 (955)
+.+ ...++||||++++.|+.++..|...++. +..+||
T Consensus 173 l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~---------------------------------------v~~lhg--- 209 (440)
T 1yks_A 173 ILA-DKRPTAWFLPSIRAANVMAASLRKAGKS---------------------------------------VVVLNR--- 209 (440)
T ss_dssp HHH-CCSCEEEECSCHHHHHHHHHHHHHTTCC---------------------------------------EEECCS---
T ss_pred HHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCC---------------------------------------EEEecc---
Confidence 222 2478999999999999999999875433 789999
Q ss_pred HHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecc---------------eeccCCCCcccCHHHHHHHhccCC
Q 002183 404 PVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAV---------------KKWDGDSHRYIGSGEYIQMSGRAG 468 (955)
Q Consensus 404 ~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~---------------~~~d~~~~~~~s~~ey~Q~~GRaG 468 (955)
.+|+.++..|++|.++|||||+++++|||+| +++||++. ..||. |.++.+|+||+||||
T Consensus 210 -~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~----p~~~~~~~Qr~GR~G 283 (440)
T 1yks_A 210 -KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL----RISASSAAQRRGRIG 283 (440)
T ss_dssp -SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE----ECCHHHHHHHHTTSS
T ss_pred -hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc----ccCHHHHHHhccccC
Confidence 4688999999999999999999999999999 99888422 13555 899999999999999
Q ss_pred CC-CCCCceEEEEEe
Q 002183 469 RR-GKDDRGICIIMV 482 (955)
Q Consensus 469 R~-G~~~~g~~ii~~ 482 (955)
|. |. .|.|++++
T Consensus 284 R~g~~--~g~~~~l~ 296 (440)
T 1yks_A 284 RNPNR--DGDSYYYS 296 (440)
T ss_dssp CCTTC--CCEEEEEC
T ss_pred CCCCC--CceEEEEe
Confidence 98 45 57777775
No 50
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=6.8e-32 Score=319.58 Aligned_cols=350 Identities=15% Similarity=0.111 Sum_probs=232.4
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----Ce
Q 002183 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~v 146 (955)
..+|+.|+|+|..+++.+.+|+ ++.++||+|||++|.+|++.....|..|+|++||++||.|.+..+..++. .+
T Consensus 106 R~lG~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv 183 (922)
T 1nkt_A 106 RVLDQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQV 183 (922)
T ss_dssp HHHSCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHcCCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 4589999999999999999998 99999999999999999976555678899999999999999888877654 78
Q ss_pred eEEecccccC-----CCCCEEEEeHHHH-HHHHhcC------CccCCccceEEEEccccCC-CCC---------------
Q 002183 147 GLMTGDVTLS-----PNASCLVMTTEIL-RGMLYRG------SEVLKEVAWVIFDEIHYMK-DRE--------------- 198 (955)
Q Consensus 147 g~~tGd~~~~-----~~~~IlV~Tpe~L-~~~l~~~------~~~l~~l~~vIiDEaH~l~-d~~--------------- 198 (955)
++++|+.+.. ..++|+|+||++| .++|..+ ...++.+.++|+||||.|+ |..
T Consensus 184 ~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~ 263 (922)
T 1nkt_A 184 GVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASN 263 (922)
T ss_dssp EECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHH
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchh
Confidence 8999987532 1589999999998 5655433 3557889999999999987 532
Q ss_pred ChHHHHHHHHhCC---------CcceEE-----------------EeccccCCh-HHHHHHHhh---hcCCCeEEEe---
Q 002183 199 RGVVWEESIIFLP---------PAIKMV-----------------FLSATMSNA-TQFAEWICH---LHKQPCHVVY--- 245 (955)
Q Consensus 199 rg~~~~~ii~~l~---------~~~~~v-----------------~lSAT~~n~-~~~~~~l~~---~~~~~~~v~~--- 245 (955)
+...+..++..++ +..|++ ++|||.+.. ..+...+.. +..+.-+++.
T Consensus 264 ~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~ 343 (922)
T 1nkt_A 264 WYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGE 343 (922)
T ss_dssp HHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSC
T ss_pred HHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCc
Confidence 3356777888887 678888 899998742 222222211 1111111211
Q ss_pred ----cC--CCc-------------------cc-------ceEEE---e------ecCCCceEEeecccchhchhhHHHHH
Q 002183 246 ----TD--FRP-------------------TP-------LQHYV---F------PVGGSGLYLVVDEKEQFREDNFVKLQ 284 (955)
Q Consensus 246 ----~~--~rp-------------------~p-------l~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (955)
.. .|. +. +.... | ..+..+.. ..+ ...|.+.+
T Consensus 344 vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa--~te-----~~Ef~~iY 416 (922)
T 1nkt_A 344 VLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTA--QTE-----AAELHEIY 416 (922)
T ss_dssp EEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCC--GGG-----HHHHHHHH
T ss_pred eEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCc--hhH-----HHHHHHHh
Confidence 11 010 00 00000 0 00000000 000 00111111
Q ss_pred HHHHHhhccCCccCCCCCCCccCCC--CCCCCCcHHHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHH
Q 002183 285 DTFLKQKIGGRRENGKASGRMAKGG--SGSGGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEK 360 (955)
Q Consensus 285 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~ 360 (955)
. -....-|. . ....+..... ......+...++..+.. ..+.|+||||.|+..++.++..|...++.
T Consensus 417 ~---l~vv~IPt-n-~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~----- 486 (922)
T 1nkt_A 417 K---LGVVSIPT-N-MPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIP----- 486 (922)
T ss_dssp C---CEEEECCC-S-SCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCC-----
T ss_pred C---CCeEEeCC-C-CCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCC-----
Confidence 0 00000000 0 0000000000 00112234455555543 35679999999999999999999987776
Q ss_pred HHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCc---
Q 002183 361 DTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAK--- 437 (955)
Q Consensus 361 ~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~--- 437 (955)
..++||++.+.+++.+...|+.| .|+|||++++||+|++..
T Consensus 487 ----------------------------------~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~ 530 (922)
T 1nkt_A 487 ----------------------------------HNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNV 530 (922)
T ss_dssp ----------------------------------CEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCH
T ss_pred ----------------------------------EEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCH
Confidence 46899999888888888888888 699999999999999974
Q ss_pred -------------------------------------------------EEEEecceeccCCCCcccCHHHHHHHhccCC
Q 002183 438 -------------------------------------------------TVVFTAVKKWDGDSHRYIGSGEYIQMSGRAG 468 (955)
Q Consensus 438 -------------------------------------------------~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaG 468 (955)
.+|| +||. |.+...|.|++||+|
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI----~te~----pes~riy~qr~GRTG 602 (922)
T 1nkt_A 531 DFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVL----GTER----HESRRIDNQLRGRSG 602 (922)
T ss_dssp HHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEE----ECSC----CSSHHHHHHHHHTSS
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEE----eccC----CCCHHHHHHHhcccc
Confidence 6899 7777 889999999999999
Q ss_pred CCCCCCceEEEEEeC
Q 002183 469 RRGKDDRGICIIMVD 483 (955)
Q Consensus 469 R~G~~~~g~~ii~~~ 483 (955)
|.|..|.+..|+...
T Consensus 603 RqGdpG~s~fflSle 617 (922)
T 1nkt_A 603 RQGDPGESRFYLSLG 617 (922)
T ss_dssp GGGCCEEEEEEEETT
T ss_pred cCCCCeeEEEEechh
Confidence 999965555555443
No 51
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.98 E-value=1e-32 Score=320.62 Aligned_cols=278 Identities=17% Similarity=0.136 Sum_probs=187.0
Q ss_pred HHHHhcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccc--cCCCCCE
Q 002183 85 VACLERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT--LSPNASC 161 (955)
Q Consensus 85 i~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~--~~~~~~I 161 (955)
...+.++++++++||||||||++|.+|++..+ ..+.++||++||++|++|+++.+... .++...+... ..+...+
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~~~~t~~~~i 92 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL--PVRYQTSAVQREHQGNEIV 92 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS--CEEECC--------CCCSE
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc--eEeEEecccccCCCCCcEE
Confidence 44568899999999999999999999988765 46889999999999999999998622 3443333222 1345567
Q ss_pred EEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHH-hCCCcceEEEeccccCChHHHHHHHhhhcCCC
Q 002183 162 LVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII-FLPPAIKMVFLSATMSNATQFAEWICHLHKQP 240 (955)
Q Consensus 162 lV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~-~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~ 240 (955)
.++|.+.+...+... ..+.++++||+||||.+. ......+..+.. ..+++.|+++||||++.... .+ ..
T Consensus 93 ~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~--~~----~~-- 162 (459)
T 2z83_A 93 DVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTD-PASIAARGYIATKVELGEAAAIFMTATPPGTTD--PF----PD-- 162 (459)
T ss_dssp EEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC--SS----CC--
T ss_pred EEEchHHHHHHhhcc-ccccCCcEEEEECCccCC-chhhHHHHHHHHHhccCCccEEEEEcCCCcchh--hh----cc--
Confidence 889999988776654 347899999999999752 111122221111 22468999999999984311 00 00
Q ss_pred eEEEecCCCcccceEEEeecCCCceEEeecccchhchhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHH
Q 002183 241 CHVVYTDFRPTPLQHYVFPVGGSGLYLVVDEKEQFREDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKI 320 (955)
Q Consensus 241 ~~v~~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (955)
...|+...... .... . ... +
T Consensus 163 --------~~~pi~~~~~~---------~~~~-~---------------------------------------~~~---~ 182 (459)
T 2z83_A 163 --------SNAPIHDLQDE---------IPDR-A---------------------------------------WSS---G 182 (459)
T ss_dssp --------CSSCEEEEECC---------CCSS-C---------------------------------------CSS---C
T ss_pred --------CCCCeEEeccc---------CCcc-h---------------------------------------hHH---H
Confidence 01111110000 0000 0 000 0
Q ss_pred HHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecC
Q 002183 321 VKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHS 400 (955)
Q Consensus 321 ~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~ 400 (955)
+..+.+ ..+++||||+|++.|+.++..|...++. +..+||
T Consensus 183 ~~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~~---------------------------------------v~~lh~ 222 (459)
T 2z83_A 183 YEWITE-YAGKTVWFVASVKMGNEIAMCLQRAGKK---------------------------------------VIQLNR 222 (459)
T ss_dssp CHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCC---------------------------------------EEEEST
T ss_pred HHHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCCc---------------------------------------EEecCH
Confidence 112222 2578999999999999999999875443 678898
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecce------e----------ccCCCCcccCHHHHHHHh
Q 002183 401 GLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVK------K----------WDGDSHRYIGSGEYIQMS 464 (955)
Q Consensus 401 ~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~------~----------~d~~~~~~~s~~ey~Q~~ 464 (955)
. +|+.+++.|++|.++|||||+++++|||+|+ ++||+... . ||. |.++.+|+||+
T Consensus 223 ~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~----p~s~~~~~QR~ 293 (459)
T 2z83_A 223 K----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPS----PITSASAAQRR 293 (459)
T ss_dssp T----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCE----ECCHHHHHHHH
T ss_pred H----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCC----CCCHHHHHHhc
Confidence 4 7888999999999999999999999999999 88885321 1 344 89999999999
Q ss_pred ccCCCCCCCCceEEEEEeCC
Q 002183 465 GRAGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 465 GRaGR~G~~~~g~~ii~~~~ 484 (955)
|||||.|.. .|.+++++.+
T Consensus 294 GRaGR~g~~-~G~~~~~~~~ 312 (459)
T 2z83_A 294 GRVGRNPNQ-VGDEYHYGGA 312 (459)
T ss_dssp TTSSCCTTC-CCEEEEECSC
T ss_pred cccCCCCCC-CCeEEEEEcc
Confidence 999999961 3555555543
No 52
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.98 E-value=2.3e-31 Score=320.41 Aligned_cols=328 Identities=15% Similarity=0.142 Sum_probs=192.4
Q ss_pred CCCCCHHHHHHHHHHhc-----CCcEEEEcCCCCchHHHHHHHHHHHHh---------cCCeEEEEccChhhHHHHH-HH
Q 002183 74 SFELDPFQRVSVACLER-----NESVLVSAHTSAGKTAVAEYAIAMAFR---------DKQRVIYTSPLKALSNQKY-RE 138 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~-----g~~vlv~apTGsGKTl~~~~~i~~~l~---------~~~~vl~l~PtkaLa~Q~~-~~ 138 (955)
++.|+|+|.+|++.+.. ++++++++|||+|||++++..+...+. .+.++||++|+++|+.|++ +.
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 34799999999998754 467999999999999998777766665 4589999999999999999 77
Q ss_pred HHHhcCCeeEEecccccCCCCCEEEEeHHHHHHHHhcC----CccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcc
Q 002183 139 LHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGMLYRG----SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 214 (955)
Q Consensus 139 l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~----~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~ 214 (955)
|+.+...++.+.++ ....+.+|+|+||++|.+..... ......+++||+||||++.+.. +..|..++..++ ..
T Consensus 256 ~~~~~~~~~~~~~~-~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~ 332 (590)
T 3h1t_A 256 FTPFGDARHKIEGG-KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE-PA 332 (590)
T ss_dssp CTTTCSSEEECCC---CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHST-TS
T ss_pred HHhcchhhhhhhcc-CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC-cc
Confidence 77665566665544 34567899999999998765321 1234678999999999997642 356777777776 47
Q ss_pred eEEEeccccCChH--HHHHHHhhhcCCCeEEEec-----CCCcccceEEEeecCCC--ceEEe---ec------ccchhc
Q 002183 215 KMVFLSATMSNAT--QFAEWICHLHKQPCHVVYT-----DFRPTPLQHYVFPVGGS--GLYLV---VD------EKEQFR 276 (955)
Q Consensus 215 ~~v~lSAT~~n~~--~~~~~l~~~~~~~~~v~~~-----~~rp~pl~~~~~~~~~~--~~~~~---~~------~~~~~~ 276 (955)
++++||||+.+.. +...+++ .++..... +....|........... ..... .+ ....+.
T Consensus 333 ~~l~lTATP~~~~~~~~~~~f~----~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (590)
T 3h1t_A 333 FQIGMTATPLREDNRDTYRYFG----NPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQ 408 (590)
T ss_dssp EEEEEESSCSCTTTHHHHHHSC----SCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------
T ss_pred eEEEeccccccccchhHHHHcC----CceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCC
Confidence 8999999987543 3333332 22222111 00111211111110000 00000 00 000000
Q ss_pred hhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHH-HHHHHHHH-cCCCcEEEEEcChHHHHHHHHHhccCCC
Q 002183 277 EDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIF-KIVKMIME-RKFQPVIVFSFSRRECEQHAMSMSKLDF 354 (955)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~-~~~~~~IVF~~s~~~~~~la~~L~~~~~ 354 (955)
...+.+...... ....+. .+...+.. ....++||||+++..|+.++..|...+.
T Consensus 409 ~~~~~~~~~~~~------------------------r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~ 464 (590)
T 3h1t_A 409 TKDFERVIALKA------------------------RTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNS 464 (590)
T ss_dssp CCSHHHHHHHHH------------------------THHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTH
T ss_pred HHHhhhHhcChH------------------------HHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhh
Confidence 000100000000 000111 12222332 2457899999999999999999976321
Q ss_pred CCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCcc---EEEEccccccc
Q 002183 355 NTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVK---ALFATETFAMG 431 (955)
Q Consensus 355 ~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~---VLvaT~~la~G 431 (955)
.. .......+..+||+++ .+|+.+++.|++|..+ |||||+++++|
T Consensus 465 ~~-------------------------------~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~G 512 (590)
T 3h1t_A 465 DL-------------------------------SRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTG 512 (590)
T ss_dssp HH-------------------------------HTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTT
T ss_pred hh-------------------------------hccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcC
Confidence 10 0000122677888875 4799999999998766 89999999999
Q ss_pred CCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCC
Q 002183 432 LNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGK 472 (955)
Q Consensus 432 idip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~ 472 (955)
||+|++++|| .|+. +.++..|+||+||+||.|.
T Consensus 513 iDip~v~~Vi----~~~~----~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 513 VDAPTCKNVV----LARV----VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp CCCTTEEEEE----EESC----CCCHHHHHHHHTTSCCCBG
T ss_pred ccchheeEEE----EEec----CCChHHHHHHHhhhcccCc
Confidence 9999999999 7777 8899999999999999885
No 53
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.98 E-value=7.2e-31 Score=329.87 Aligned_cols=378 Identities=15% Similarity=0.091 Sum_probs=238.2
Q ss_pred CCCCCHHHHHHHHHHhc--CCcEEEEcCCCCchHHHHHHHHHHHHhcCC--eEEEEccChhhHHHHHHHHHHhcC-CeeE
Q 002183 74 SFELDPFQRVSVACLER--NESVLVSAHTSAGKTAVAEYAIAMAFRDKQ--RVIYTSPLKALSNQKYRELHQEFK-DVGL 148 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~--g~~vlv~apTGsGKTl~~~~~i~~~l~~~~--~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~ 148 (955)
.++|+|+|.+++..+.. +.+++++++||+|||+++..++...+..+. ++||++|+ +|+.||..++.+.|+ ++.+
T Consensus 151 ~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v 229 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFAL 229 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEE
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEE
Confidence 46799999999988754 458999999999999999888888776655 89999999 999999999988887 6777
Q ss_pred Eecccc---------cCCCCCEEEEeHHHHHHHHhc-CCccCCccceEEEEccccCCCCCCh--HHHHHHHHhCCCcceE
Q 002183 149 MTGDVT---------LSPNASCLVMTTEILRGMLYR-GSEVLKEVAWVIFDEIHYMKDRERG--VVWEESIIFLPPAIKM 216 (955)
Q Consensus 149 ~tGd~~---------~~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~~vIiDEaH~l~d~~rg--~~~~~ii~~l~~~~~~ 216 (955)
++|+.. .....+|+|+|++.+...... ......++++||+||||++.+.... ..+..+........++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~ 309 (968)
T 3dmq_A 230 FDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGV 309 (968)
T ss_dssp CCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSE
T ss_pred EccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcE
Confidence 766541 223579999999988642211 1122457899999999999865422 2233333333345579
Q ss_pred EEeccccC--ChHHHHHHHhhhcCCCeEEE--------------------ecCC--Cc---ccceEEEeecCCCceEEee
Q 002183 217 VFLSATMS--NATQFAEWICHLHKQPCHVV--------------------YTDF--RP---TPLQHYVFPVGGSGLYLVV 269 (955)
Q Consensus 217 v~lSAT~~--n~~~~~~~l~~~~~~~~~v~--------------------~~~~--rp---~pl~~~~~~~~~~~~~~~~ 269 (955)
++||||+. +..++..++........... .... .+ ..+...+.......+....
T Consensus 310 L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~ 389 (968)
T 3dmq_A 310 LLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAA 389 (968)
T ss_dssp EESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGT
T ss_pred EEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcc
Confidence 99999984 22333333332211100000 0000 00 0000000000000000000
Q ss_pred cccchhchhhHHHHHHHHHHhhccCC------c-cCCCC-----------------------------------------
Q 002183 270 DEKEQFREDNFVKLQDTFLKQKIGGR------R-ENGKA----------------------------------------- 301 (955)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~------~-~~~~~----------------------------------------- 301 (955)
.................+........ . ...+.
T Consensus 390 ~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 469 (968)
T 3dmq_A 390 NSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLY 469 (968)
T ss_dssp CCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHC
T ss_pred cchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcC
Confidence 00000000001111111111000000 0 00000
Q ss_pred ----CCC--ccCCCCCCCCCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHhhc
Q 002183 302 ----SGR--MAKGGSGSGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSK-LDFNTQEEKDTVEQVFQNAVDCL 374 (955)
Q Consensus 302 ----~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~-~~~~~~~e~~~i~~~~~~~~~~l 374 (955)
... ...........+...+.+.+......++||||+++..++.++..|.. .++.
T Consensus 470 pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~------------------- 530 (968)
T 3dmq_A 470 PERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIR------------------- 530 (968)
T ss_dssp SGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCC-------------------
T ss_pred hHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCc-------------------
Confidence 000 00000111233456667777766788999999999999999999974 3433
Q ss_pred ccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCC--ccEEEEcccccccCCCCCcEEEEecceeccCCCC
Q 002183 375 NEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGL--VKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH 452 (955)
Q Consensus 375 ~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~--i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~ 452 (955)
+..+||+|++.+|+.++..|++|. ++|||||+++++|+|+|++++|| .||.
T Consensus 531 --------------------~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI----~~d~--- 583 (968)
T 3dmq_A 531 --------------------AAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMV----MFDL--- 583 (968)
T ss_dssp --------------------EEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEE----CSSC---
T ss_pred --------------------EEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEE----EecC---
Confidence 789999999999999999999998 99999999999999999999999 8888
Q ss_pred cccCHHHHHHHhccCCCCCCCCceEEEEEeCCcccHHHHHHhHhCCC
Q 002183 453 RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQMEMNTLKDMVLGKP 499 (955)
Q Consensus 453 ~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~~~~~~~~~l~~~~~ 499 (955)
|.++..|.|++||+||.|+.+...++.+.......+.+.+++..+.
T Consensus 584 -p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~ 629 (968)
T 3dmq_A 584 -PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGL 629 (968)
T ss_dssp -CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTT
T ss_pred -CCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCC
Confidence 8999999999999999999887788777766544455555554333
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=1.2e-28 Score=290.92 Aligned_cols=358 Identities=14% Similarity=0.119 Sum_probs=227.9
Q ss_pred CCCCCCHHHHHHHHHH----hcCCcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccChhhHHHHHHHHHHhcC--
Q 002183 73 YSFELDPFQRVSVACL----ERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFK-- 144 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l----~~g~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~PtkaLa~Q~~~~l~~~~~-- 144 (955)
+...|+|+|.+++..+ ..+.+++++++||+|||+++...+...... ..++||++| .+|+.||.+++.++++
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~ 112 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHL 112 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTS
T ss_pred hhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCc
Confidence 4456999999999876 567899999999999999987666655543 368999999 5799999999999987
Q ss_pred CeeEEecccccC--CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccc
Q 002183 145 DVGLMTGDVTLS--PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSAT 222 (955)
Q Consensus 145 ~vg~~tGd~~~~--~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT 222 (955)
.+.+++|+.... ...+|+|+|++.+.+... .....+++||+||||++.+.. ......+..++ ..+.++||||
T Consensus 113 ~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~l~LTaT 186 (500)
T 1z63_A 113 RFAVFHEDRSKIKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRIALTGT 186 (500)
T ss_dssp CEEECSSSTTSCCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEEEECSS
T ss_pred eEEEEecCchhccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcEEEEecC
Confidence 566677765322 357899999999875432 123468999999999998753 33445555664 4678999999
Q ss_pred cC--ChHHHHHHHhhhcC--------------------------------CCeEEEecC-------CCcccceEEEeecC
Q 002183 223 MS--NATQFAEWICHLHK--------------------------------QPCHVVYTD-------FRPTPLQHYVFPVG 261 (955)
Q Consensus 223 ~~--n~~~~~~~l~~~~~--------------------------------~~~~v~~~~-------~rp~pl~~~~~~~~ 261 (955)
+. +..++...+..+.. .+..+..+. .-|......+
T Consensus 187 P~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v---- 262 (500)
T 1z63_A 187 PIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNV---- 262 (500)
T ss_dssp CSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEE----
T ss_pred CCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEE----
Confidence 84 33444333322211 011111110 0011111111
Q ss_pred CCceEEeecccchhchhhHHHHHHHHH--------------------H--hhccCCccCCCCCCCccCCCCCCCCCcHHH
Q 002183 262 GSGLYLVVDEKEQFREDNFVKLQDTFL--------------------K--QKIGGRRENGKASGRMAKGGSGSGGSDIFK 319 (955)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~l~--------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (955)
+....+ .....|........ . .....+.-... .........++..
T Consensus 263 ----~~~l~~---~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~------~~~~~~~s~K~~~ 329 (500)
T 1z63_A 263 ----YCNLTP---EQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKG------GEQSVRRSGKMIR 329 (500)
T ss_dssp ----EECCCH---HHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHC------SCCCSTTCHHHHH
T ss_pred ----EcCCCH---HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcC------ccchhhcchhHHH
Confidence 000010 00111111111100 0 00000000000 0000011233444
Q ss_pred HHHHHHHc--CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEe
Q 002183 320 IVKMIMER--KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAV 397 (955)
Q Consensus 320 l~~~l~~~--~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~ 397 (955)
+.+.+.+. .+.++||||.++..++.++..|... ....+..
T Consensus 330 l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~--------------------------------------~~~~~~~ 371 (500)
T 1z63_A 330 TMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKE--------------------------------------LNTEVPF 371 (500)
T ss_dssp HHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHH--------------------------------------HTCCCCE
T ss_pred HHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHh--------------------------------------hCCCeEE
Confidence 44444432 5679999999999999998888642 1123678
Q ss_pred ecCCCCHHHHHHHHHHHhcC-Ccc-EEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCc
Q 002183 398 HHSGLLPVIKELVELLFQEG-LVK-ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDR 475 (955)
Q Consensus 398 ~H~~l~~~~R~~v~~~F~~g-~i~-VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~ 475 (955)
+||++++.+|+.+++.|++| ..+ +|++|+++++|+|+|++++|| .||. |+++..|.|++||++|.|+...
T Consensus 372 ~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi----~~d~----~~~~~~~~Q~~gR~~R~Gq~~~ 443 (500)
T 1z63_A 372 LYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----HFDR----WWNPAVEDQATDRVYRIGQTRN 443 (500)
T ss_dssp EETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE----ESSC----CSCC---CHHHHTTTTTTTTSC
T ss_pred EECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE----EeCC----CCCcchHHHHHHHHHHcCCCCe
Confidence 99999999999999999998 565 799999999999999999999 8888 8999999999999999999888
Q ss_pred eEEEEEeCCcccHHHHHHhHhCCCC
Q 002183 476 GICIIMVDEQMEMNTLKDMVLGKPA 500 (955)
Q Consensus 476 g~~ii~~~~~~~~~~~~~l~~~~~~ 500 (955)
..++.++....-.+.+.+++..+..
T Consensus 444 v~v~~lv~~~tiee~i~~~~~~K~~ 468 (500)
T 1z63_A 444 VIVHKLISVGTLEEKIDQLLAFKRS 468 (500)
T ss_dssp EEEEEEEETTSHHHHTHHHHTTCSS
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 8887777555333444455554433
No 55
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=5.2e-26 Score=283.17 Aligned_cols=337 Identities=15% Similarity=0.105 Sum_probs=207.4
Q ss_pred CCCCHHHHHHHHHHhc--------------CCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHHH
Q 002183 75 FELDPFQRVSVACLER--------------NESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYR 137 (955)
Q Consensus 75 f~l~~~Q~~ai~~l~~--------------g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~~ 137 (955)
+.|+|+|.+|++.+.. +++++++++||||||+++ ++++..+.. ..++||++|+++|+.|+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 3599999999998743 368999999999999998 555555542 3699999999999999999
Q ss_pred HHHHhcCCeeEEecccc-------c-CCCCCEEEEeHHHHHHHHhcCC--ccCCccceEEEEccccCCCCCChHHHHHHH
Q 002183 138 ELHQEFKDVGLMTGDVT-------L-SPNASCLVMTTEILRGMLYRGS--EVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (955)
Q Consensus 138 ~l~~~~~~vg~~tGd~~-------~-~~~~~IlV~Tpe~L~~~l~~~~--~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii 207 (955)
+|..+.+.. +.|..+ + ...++|+|+||++|..++.... ..+....+||+||||++.. +..+..+.
T Consensus 349 ~f~~f~~~~--v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~ 423 (1038)
T 2w00_A 349 EYQRFSPDS--VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQKNLK 423 (1038)
T ss_dssp HHHTTSTTC--SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHHHHH
T ss_pred HHHHhcccc--cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHHHHH
Confidence 998876531 112211 1 3468999999999998776432 2356788999999999753 45566666
Q ss_pred HhCCCcceEEEeccccCChH------HHHHHHhhhcCCCeEEEec-----CCCcccceEEEeecCCCceEEeecccchhc
Q 002183 208 IFLPPAIKMVFLSATMSNAT------QFAEWICHLHKQPCHVVYT-----DFRPTPLQHYVFPVGGSGLYLVVDEKEQFR 276 (955)
Q Consensus 208 ~~l~~~~~~v~lSAT~~n~~------~~~~~l~~~~~~~~~v~~~-----~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~ 276 (955)
..+| +.++++||||+.... ....+++ .+++...- +.--+|+...... +.. .+.
T Consensus 424 ~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG----~~i~~Y~l~~AI~dg~l~p~~v~y~~---------v~~--~~~ 487 (1038)
T 2w00_A 424 KKFK-RYYQFGFTGTPIFPENALGSETTASVFG----RELHSYVITDAIRDEKVLKFKVDYND---------VRP--QFK 487 (1038)
T ss_dssp HHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHC----SEEEEECHHHHHHHTSSCCEEEEECC---------CCG--GGH
T ss_pred HhCC-cccEEEEeCCccccccchhhhHHHHHhC----CeeEeecHHHHHhCCCcCCeEEEEEe---------ccc--hhh
Confidence 7776 479999999997432 2334443 22222210 1111222211100 000 010
Q ss_pred hhhHHHHHHHHHHhhccCCccCCCCCCCccCCCCCCCCCcHHHHH----HHHHHc--------CCCcEEEEEcChHHHHH
Q 002183 277 EDNFVKLQDTFLKQKIGGRRENGKASGRMAKGGSGSGGSDIFKIV----KMIMER--------KFQPVIVFSFSRRECEQ 344 (955)
Q Consensus 277 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~l~~~--------~~~~~IVF~~s~~~~~~ 344 (955)
.............. . . ... -.....+..++ ...... .+.++||||.|+..|..
T Consensus 488 ~~~~e~d~~~~~~i--~-----------~-~~~-l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~ 552 (1038)
T 2w00_A 488 SLETETDEKKLSAA--E-----------N-QQA-FLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKA 552 (1038)
T ss_dssp HHHTCCCHHHHHHT--C-----------S-TTT-TTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHH
T ss_pred hccccccHHHHHHH--H-----------H-HHH-hcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHH
Confidence 00000000000000 0 0 000 00111222332 333221 23579999999999999
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCe-EeecCC----------C----------C
Q 002183 345 HAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI-AVHHSG----------L----------L 403 (955)
Q Consensus 345 la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi-~~~H~~----------l----------~ 403 (955)
++..|...+. +...... .... ..+ .++||+ + +
T Consensus 553 ~~~~l~~~~~--------------~~~~~~~-~~~~------------~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~ 605 (1038)
T 2w00_A 553 YYATFKRLQE--------------EAANKSA-TYKP------------LRIATIFSFAANEEQNAIGEISDETFDTSAMD 605 (1038)
T ss_dssp HHHHHHHHHH--------------HHTTTSS-SCCC------------CCEEEECCCCC------CCCCCCCCSCGGGSC
T ss_pred HHHHHHhhhh--------------hhccccc-cccc------------CcEEEEEeCCCccccccccccccccccccccc
Confidence 9998865210 0000000 0000 012 223321 1 2
Q ss_pred -----------------------------HHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcc
Q 002183 404 -----------------------------PVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY 454 (955)
Q Consensus 404 -----------------------------~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~ 454 (955)
+..|..++..|++|.++|||+|+++.+|+|+|.+++++ +|. |
T Consensus 606 ~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tly-----lDk----p 676 (1038)
T 2w00_A 606 SSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLF-----VDK----N 676 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEE-----EES----C
T ss_pred hhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEE-----Ecc----C
Confidence 22588899999999999999999999999999996654 565 8
Q ss_pred cCHHHHHHHhccCCCCCCC--CceEEEEEeCC
Q 002183 455 IGSGEYIQMSGRAGRRGKD--DRGICIIMVDE 484 (955)
Q Consensus 455 ~s~~ey~Q~~GRaGR~G~~--~~g~~ii~~~~ 484 (955)
++...|+|++||++|.+.+ ..|.++.+.+.
T Consensus 677 l~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 677 LRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp CCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred CCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 8999999999999999863 46888877754
No 56
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.95 E-value=3.3e-27 Score=250.88 Aligned_cols=182 Identities=15% Similarity=0.137 Sum_probs=155.2
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh--------cCCeEEEEccChhhHH
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR--------DKQRVIYTSPLKALSN 133 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~--------~~~~vl~l~PtkaLa~ 133 (955)
+.........+||. |+|+|.++++.+.+|++++++||||||||++|++|++..+. .+.++||++||++|+.
T Consensus 37 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~ 116 (242)
T 3fe2_A 37 PANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQ 116 (242)
T ss_dssp CHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHH
Confidence 33444445567998 99999999999999999999999999999999999998875 3678999999999999
Q ss_pred HHHHHHHHhcC----CeeEEecccccC-------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHH
Q 002183 134 QKYRELHQEFK----DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVV 202 (955)
Q Consensus 134 Q~~~~l~~~~~----~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~ 202 (955)
|+++.++.++. .++.++|+.... .+++|+|+||++|.+++.++...+.++++||+||||++.+++++..
T Consensus 117 Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~ 196 (242)
T 3fe2_A 117 QVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQ 196 (242)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHH
Confidence 99999988643 677788876532 3689999999999999988887889999999999999999999999
Q ss_pred HHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEec
Q 002183 203 WEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT 246 (955)
Q Consensus 203 ~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~ 246 (955)
+..++..++++.|++++|||+++. +.+++..+..+++.+...
T Consensus 197 ~~~i~~~~~~~~q~~~~SAT~~~~--~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 197 IRKIVDQIRPDRQTLMWSATWPKE--VRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp HHHHHTTSCSSCEEEEEESCCCHH--HHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHhCCccceEEEEEeecCHH--HHHHHHHHCCCCEEEEec
Confidence 999999999999999999999854 446676666666665543
No 57
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.94 E-value=6.6e-27 Score=244.62 Aligned_cols=185 Identities=18% Similarity=0.209 Sum_probs=155.9
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh---cCCeEEEEccChhhHHHHHHH
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~---~~~~vl~l~PtkaLa~Q~~~~ 138 (955)
+.........+||. |+|+|.++++.+.+|++++++||||||||++|.++++..+. .+.+++|++||++|++|++++
T Consensus 12 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 91 (219)
T 1q0u_A 12 QPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHE 91 (219)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHH
Confidence 33444455667887 99999999999999999999999999999999999998875 357899999999999999999
Q ss_pred HHHhcC--------CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHH
Q 002183 139 LHQEFK--------DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVW 203 (955)
Q Consensus 139 l~~~~~--------~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~ 203 (955)
+++.+. .++.++|+... ..+++|+|+||+++.+++.++...+.++++||+||||++.+++++..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l 171 (219)
T 1q0u_A 92 TLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDV 171 (219)
T ss_dssp HHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHH
T ss_pred HHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHH
Confidence 988753 45667777642 246799999999999998887777889999999999999999999999
Q ss_pred HHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEEecCCC
Q 002183 204 EESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYTDFR 249 (955)
Q Consensus 204 ~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~~~r 249 (955)
..++..++++.|++++|||+++ ++.+|+..+..+|..+.....+
T Consensus 172 ~~i~~~~~~~~~~l~~SAT~~~--~~~~~~~~~~~~p~~~~~~~~~ 215 (219)
T 1q0u_A 172 DQIAARMPKDLQMLVFSATIPE--KLKPFLKKYMENPTFVHVLEHH 215 (219)
T ss_dssp HHHHHTSCTTCEEEEEESCCCG--GGHHHHHHHCSSCEEEECC---
T ss_pred HHHHHhCCcccEEEEEecCCCH--HHHHHHHHHcCCCeEEEeeccc
Confidence 9999999999999999999985 4668888888888776655443
No 58
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.94 E-value=1e-26 Score=244.85 Aligned_cols=175 Identities=17% Similarity=0.156 Sum_probs=147.9
Q ss_pred hhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh---------cCCeEEEEccChhhHHHHHH
Q 002183 68 EMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---------DKQRVIYTSPLKALSNQKYR 137 (955)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~---------~~~~vl~l~PtkaLa~Q~~~ 137 (955)
.....+||. |+|+|.++++.+.+|++++++||||||||++|++|++..+. .+.++||++||++|++|+++
T Consensus 33 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 112 (228)
T 3iuy_A 33 KSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEA 112 (228)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHH
Confidence 334456886 99999999999999999999999999999999999988764 57789999999999999999
Q ss_pred HHHHhcC---CeeEEecccccC-------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHH
Q 002183 138 ELHQEFK---DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (955)
Q Consensus 138 ~l~~~~~---~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii 207 (955)
++..+.. .+..++|+.... .+++|+|+||+++.+++......+.++++||+||||++.+++++..+..++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~ 192 (228)
T 3iuy_A 113 ECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL 192 (228)
T ss_dssp HHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHH
T ss_pred HHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHH
Confidence 9999743 677788876543 357999999999999988887778999999999999999999999999999
Q ss_pred HhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEE
Q 002183 208 IFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (955)
Q Consensus 208 ~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~ 244 (955)
..++++.|++++|||+++. +.+++..+..+|..+.
T Consensus 193 ~~~~~~~~~l~~SAT~~~~--~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 193 LDVRPDRQTVMTSATWPDT--VRQLALSYLKDPMIVY 227 (228)
T ss_dssp HHSCSSCEEEEEESCCCHH--HHHHHHTTCSSCEEEE
T ss_pred HhCCcCCeEEEEEeeCCHH--HHHHHHHHCCCCEEEe
Confidence 9999999999999999854 4466766666665543
No 59
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.94 E-value=3.1e-25 Score=268.14 Aligned_cols=357 Identities=15% Similarity=0.116 Sum_probs=218.4
Q ss_pred CCCCCHHHHHHHHHH---------hcCCcEEEEcCCCCchHHHHHHHHHHHHhcC-------CeEEEEccChhhHHHHHH
Q 002183 74 SFELDPFQRVSVACL---------ERNESVLVSAHTSAGKTAVAEYAIAMAFRDK-------QRVIYTSPLKALSNQKYR 137 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l---------~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~-------~~vl~l~PtkaLa~Q~~~ 137 (955)
...|+|+|.+++..+ ..+...|++.+||+|||+.+...+...+..+ .++||++|+ +|..||.+
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHH
Confidence 446999999999886 3456799999999999999988777766543 469999996 89999999
Q ss_pred HHHHhcC---CeeEEeccccc---------------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCC
Q 002183 138 ELHQEFK---DVGLMTGDVTL---------------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRER 199 (955)
Q Consensus 138 ~l~~~~~---~vg~~tGd~~~---------------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~r 199 (955)
++.++++ .+..+.|+... ....+|+|+|++.+...... .....+++||+||||++.+..
T Consensus 132 E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~--l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV--LHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT--TTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH--hhcCCccEEEEECceecCChh-
Confidence 9999876 23444444321 12478999999999764322 223478899999999998753
Q ss_pred hHHHHHHHHhCCCcceEEEeccccC--ChHHHHHHHhhhc----------------------C-----------------
Q 002183 200 GVVWEESIIFLPPAIKMVFLSATMS--NATQFAEWICHLH----------------------K----------------- 238 (955)
Q Consensus 200 g~~~~~ii~~l~~~~~~v~lSAT~~--n~~~~~~~l~~~~----------------------~----------------- 238 (955)
......+..++ ....++||||+- +..++...+..+. .
T Consensus 209 -~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 33334444454 356899999983 2122211111000 0
Q ss_pred -----CCeEEEe-----cCCCcccceEEEeecCC---CceEEeec---------ccchhchhhHHHHHHHHHHhhccCC-
Q 002183 239 -----QPCHVVY-----TDFRPTPLQHYVFPVGG---SGLYLVVD---------EKEQFREDNFVKLQDTFLKQKIGGR- 295 (955)
Q Consensus 239 -----~~~~v~~-----~~~rp~pl~~~~~~~~~---~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~- 295 (955)
.++.+.. ...-|....+.++..-. ..+|...- ..+.... .....+..+.+. ...|
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~-~~l~~l~~Lrk~-c~hp~ 364 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISV-SSLSSITSLKKL-CNHPA 364 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCH-HHHHHHHHHHHH-HHCTH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccch-hHHHHHHHHHHH-hCCHH
Confidence 0000000 00111111111110000 00000000 0000000 000000000000 0000
Q ss_pred ----------ccCCCC-----CCCccCCCCCCCC---CcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCH
Q 002183 296 ----------RENGKA-----SGRMAKGGSGSGG---SDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQ 357 (955)
Q Consensus 296 ----------~~~~~~-----~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~ 357 (955)
...... ............. ..+..++..+......++||||.++..++.++..|...++.
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~-- 442 (644)
T 1z3i_X 365 LIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYL-- 442 (644)
T ss_dssp HHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCC--
Confidence 000000 0000000000001 11233444444445789999999999999999888654433
Q ss_pred HHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCcc---EEEEcccccccCCC
Q 002183 358 EEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLVK---ALFATETFAMGLNM 434 (955)
Q Consensus 358 ~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i~---VLvaT~~la~Gidi 434 (955)
+..+||++++.+|+.+++.|++|... +|++|.++++|+|+
T Consensus 443 -------------------------------------~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl 485 (644)
T 1z3i_X 443 -------------------------------------YVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL 485 (644)
T ss_dssp -------------------------------------EEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCC
T ss_pred -------------------------------------EEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccc
Confidence 67899999999999999999998654 89999999999999
Q ss_pred CCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 435 PAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 435 p~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
+++++|| .||. |++|..|.|++||++|.|+.....++.+....
T Consensus 486 ~~a~~Vi----~~d~----~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 486 IGANRLV----MFDP----DWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp TTEEEEE----ECSC----CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred ccCCEEE----EECC----CCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 9999999 8998 99999999999999999998878887777554
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=2.4e-26 Score=237.77 Aligned_cols=179 Identities=17% Similarity=0.218 Sum_probs=152.5
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh---cCCeEEEEccChhhHHHHHHH
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~---~~~~vl~l~PtkaLa~Q~~~~ 138 (955)
+.........+||. |+|+|.++++.+.+|++++++||||+|||++|.++++..+. .+.++||++|+++|++|+++.
T Consensus 11 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 90 (206)
T 1vec_A 11 KRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQI 90 (206)
T ss_dssp CHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHH
Confidence 33444445568997 99999999999999999999999999999999999988764 356899999999999999999
Q ss_pred HHHhcC-----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHH
Q 002183 139 LHQEFK-----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES 206 (955)
Q Consensus 139 l~~~~~-----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~i 206 (955)
+...+. .++.++|+... ...++|+|+||+++.+++.++...+.++++||+||||++.+.+++..++.+
T Consensus 91 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i 170 (206)
T 1vec_A 91 CIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDI 170 (206)
T ss_dssp HHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHH
T ss_pred HHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHH
Confidence 998763 56778887653 457899999999999999887777899999999999999999999999999
Q ss_pred HHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEE
Q 002183 207 IIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHV 243 (955)
Q Consensus 207 i~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v 243 (955)
+..++++.|++++|||+++ ++.+++.....+|..+
T Consensus 171 ~~~~~~~~~~l~~SAT~~~--~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 171 ILTLPKNRQILLYSATFPL--SVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHSCTTCEEEEEESCCCH--HHHHHHHHHCSSCEEE
T ss_pred HHhCCccceEEEEEeeCCH--HHHHHHHHHcCCCeEe
Confidence 9999989999999999984 4557777666666543
No 61
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.2e-25 Score=274.67 Aligned_cols=364 Identities=15% Similarity=0.142 Sum_probs=227.8
Q ss_pred CCCCCCHHHHHHHHHHh----cCCcEEEEcCCCCchHHHHHHHHHHHH---hcCCeEEEEccChhhHHHHHHHHHHhcC-
Q 002183 73 YSFELDPFQRVSVACLE----RNESVLVSAHTSAGKTAVAEYAIAMAF---RDKQRVIYTSPLKALSNQKYRELHQEFK- 144 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~----~g~~vlv~apTGsGKTl~~~~~i~~~l---~~~~~vl~l~PtkaLa~Q~~~~l~~~~~- 144 (955)
.+.+|+|+|.+++..+. .+.++|++.+||+|||++++..+...+ ...+++||++| .+|..||.++|.++++
T Consensus 233 ~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~ 311 (800)
T 3mwy_W 233 KGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPD 311 (800)
T ss_dssp CSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTT
T ss_pred CCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCC
Confidence 35679999999998664 889999999999999999877665543 33677999999 7899999999999987
Q ss_pred -CeeEEecccc-------------------cCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHH
Q 002183 145 -DVGLMTGDVT-------------------LSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE 204 (955)
Q Consensus 145 -~vg~~tGd~~-------------------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~ 204 (955)
.+.+.+|+.. .....+|+|+|++.+...... ..-..+++||+||||++.+. .....
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~--~s~~~ 387 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA--ESSLY 387 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS--SSHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc--hhHHH
Confidence 5666666542 123578999999998754321 11236889999999999764 34455
Q ss_pred HHHHhCCCcceEEEeccccC--ChHHHHHHHhhhcCCCeEEEec-CCCcc-------------cceEEEeec--------
Q 002183 205 ESIIFLPPAIKMVFLSATMS--NATQFAEWICHLHKQPCHVVYT-DFRPT-------------PLQHYVFPV-------- 260 (955)
Q Consensus 205 ~ii~~l~~~~~~v~lSAT~~--n~~~~~~~l~~~~~~~~~v~~~-~~rp~-------------pl~~~~~~~-------- 260 (955)
..+..++ ....++||||+- +..++...+..+.......... ..... -+..++...
T Consensus 388 ~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~ 466 (800)
T 3mwy_W 388 ESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKS 466 (800)
T ss_dssp HHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTT
T ss_pred HHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhc
Confidence 5565564 455789999983 4456665555443211110000 00000 000000000
Q ss_pred -CCCc-eEEeecccchhchhhHHHH----------------------HHHHHHhhccCCccCCCCCC---CccCCCCCC-
Q 002183 261 -GGSG-LYLVVDEKEQFREDNFVKL----------------------QDTFLKQKIGGRRENGKASG---RMAKGGSGS- 312 (955)
Q Consensus 261 -~~~~-~~~~~~~~~~~~~~~~~~~----------------------~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~- 312 (955)
+... ....+... ......|... +..+... ...|.-...... .....+...
T Consensus 467 LP~k~~~~v~v~ls-~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~-~~hp~l~~~~~~~~~~~~~~~~~~~ 544 (800)
T 3mwy_W 467 LPSKTERILRVELS-DVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKA-SNHPYLFDNAEERVLQKFGDGKMTR 544 (800)
T ss_dssp SCCEEEEEEEECCC-HHHHHHHHHHHHHCCC----------CTHHHHHHHHHHH-HHCGGGSSSHHHHHCCCC----CCS
T ss_pred cCCcEEEEEEeCCC-HHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHH-hcChhhhcchHHHHHHhcccccccH
Confidence 0000 00000000 0000111111 1111100 000000000000 000000000
Q ss_pred ---------CCCcHHHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCc
Q 002183 313 ---------GGSDIFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNL 381 (955)
Q Consensus 313 ---------~~~~~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~ 381 (955)
...++..+.+.+.. ..+.++||||..+..++.++..|...++.
T Consensus 545 ~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~-------------------------- 598 (800)
T 3mwy_W 545 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGIN-------------------------- 598 (800)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCC--------------------------
T ss_pred HHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCC--------------------------
Confidence 11223333333333 24579999999999999999998764443
Q ss_pred hhHHhHHHHhhcCeEeecCCCCHHHHHHHHHHHhcCCc---cEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHH
Q 002183 382 PAIELMLPLLKRGIAVHHSGLLPVIKELVELLFQEGLV---KALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSG 458 (955)
Q Consensus 382 ~~~~~~~~~l~~gi~~~H~~l~~~~R~~v~~~F~~g~i---~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ 458 (955)
+..+||++++.+|..+++.|++|.. .+|++|.+++.|||+|++++|| .||. +++|.
T Consensus 599 -------------~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI----~~D~----~wnp~ 657 (800)
T 3mwy_W 599 -------------FQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVV----IFDS----DWNPQ 657 (800)
T ss_dssp -------------CEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEE----ESSC----CSCSH
T ss_pred -------------EEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEE----EecC----CCChh
Confidence 6789999999999999999998654 4999999999999999999999 8888 99999
Q ss_pred HHHHHhccCCCCCCCCceEEEEEeCCc-ccHHHH
Q 002183 459 EYIQMSGRAGRRGKDDRGICIIMVDEQ-MEMNTL 491 (955)
Q Consensus 459 ey~Q~~GRaGR~G~~~~g~~ii~~~~~-~~~~~~ 491 (955)
.+.|++||++|.|+.....++.+.... .+...+
T Consensus 658 ~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~ 691 (800)
T 3mwy_W 658 ADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVL 691 (800)
T ss_dssp HHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHH
T ss_pred hHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHH
Confidence 999999999999998888888777555 344333
No 62
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.94 E-value=2.7e-26 Score=241.85 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=153.1
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh---cCCeEEEEccChhhHHHHHHH
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~---~~~~vl~l~PtkaLa~Q~~~~ 138 (955)
+.........+||. |+++|.++++.+.+|++++++||||+|||++|.++++..+. .+.++||++|+++|++|++++
T Consensus 32 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 111 (230)
T 2oxc_A 32 SRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSV 111 (230)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHH
Confidence 33444455678998 99999999999999999999999999999999999988763 357999999999999999999
Q ss_pred HHHhcC-----CeeEEeccccc------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCC-ChHHHHHH
Q 002183 139 LHQEFK-----DVGLMTGDVTL------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE-RGVVWEES 206 (955)
Q Consensus 139 l~~~~~-----~vg~~tGd~~~------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~-rg~~~~~i 206 (955)
++.++. .++.++|+... ..+++|+|+||+++.+++..+...+.++++||+||||++.+++ ++..+..+
T Consensus 112 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i 191 (230)
T 2oxc_A 112 ITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWI 191 (230)
T ss_dssp HHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHH
T ss_pred HHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHH
Confidence 998753 57788887653 2468999999999999988777778899999999999999886 89999999
Q ss_pred HHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEE
Q 002183 207 IIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHV 243 (955)
Q Consensus 207 i~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v 243 (955)
+..+++..|++++|||+++ ++.+++..+.++|..+
T Consensus 192 ~~~~~~~~~~l~lSAT~~~--~~~~~~~~~~~~p~~i 226 (230)
T 2oxc_A 192 YSSLPASKQMLAVSATYPE--FLANALTKYMRDPTFV 226 (230)
T ss_dssp HHHSCSSCEEEEEESCCCH--HHHHHHTTTCSSCEEE
T ss_pred HHhCCCCCeEEEEEeccCH--HHHHHHHHHcCCCeEE
Confidence 9999999999999999984 4668888776666554
No 63
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.94 E-value=2.5e-26 Score=243.21 Aligned_cols=178 Identities=20% Similarity=0.186 Sum_probs=148.3
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh---cCCeEEEEccChhhHHHHHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~---~~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
........+||. |+++|.++++.+.+|++++++||||||||++|.++++..+. .+.++||++|+++|++|+++.++
T Consensus 40 ~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 119 (237)
T 3bor_A 40 SLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVIL 119 (237)
T ss_dssp HHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHH
Confidence 334444568998 99999999999999999999999999999999999998875 46799999999999999999999
Q ss_pred HhcC----CeeEEecccccC--------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHH
Q 002183 141 QEFK----DVGLMTGDVTLS--------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208 (955)
Q Consensus 141 ~~~~----~vg~~tGd~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~ 208 (955)
.++. .++..+|+.... ..++|+|+||++|.+++.++...+.++++||+||||++.+++++..+..++.
T Consensus 120 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~ 199 (237)
T 3bor_A 120 ALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 199 (237)
T ss_dssp HHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred HHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHH
Confidence 8865 466677766532 2389999999999999988777788999999999999998889999999999
Q ss_pred hCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEE
Q 002183 209 FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (955)
Q Consensus 209 ~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~ 244 (955)
.+++..|++++|||+++. +.+++..+..+|..+.
T Consensus 200 ~~~~~~~~i~~SAT~~~~--~~~~~~~~l~~p~~i~ 233 (237)
T 3bor_A 200 KLNTSIQVVLLSATMPTD--VLEVTKKFMRDPIRIL 233 (237)
T ss_dssp HSCTTCEEEEECSSCCHH--HHHHHHHHCSSCEEEC
T ss_pred hCCCCCeEEEEEEecCHH--HHHHHHHHCCCCEEEE
Confidence 999999999999999854 4466666656665543
No 64
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.94 E-value=6.2e-26 Score=248.35 Aligned_cols=183 Identities=14% Similarity=0.110 Sum_probs=149.5
Q ss_pred CCCCCCchhhhhcCCCC-CCHHHHHHHHHHhcC--CcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHH
Q 002183 60 FANPVYNGEMAKTYSFE-LDPFQRVSVACLERN--ESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSN 133 (955)
Q Consensus 60 ~~~~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g--~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~ 133 (955)
+.++.........+||. |+++|.++|+.+..| ++++++||||||||++|++|++..+.. ++++||++||++|+.
T Consensus 97 l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~ 176 (300)
T 3fmo_B 97 LRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 176 (300)
T ss_dssp GTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred cCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHH
Confidence 33333344444568998 999999999999887 999999999999999999999988753 458999999999999
Q ss_pred HHHHHHHHhcC-----CeeEEecccccC----CCCCEEEEeHHHHHHHHhc-CCccCCccceEEEEccccCCC-CCChHH
Q 002183 134 QKYRELHQEFK-----DVGLMTGDVTLS----PNASCLVMTTEILRGMLYR-GSEVLKEVAWVIFDEIHYMKD-RERGVV 202 (955)
Q Consensus 134 Q~~~~l~~~~~-----~vg~~tGd~~~~----~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~~vIiDEaH~l~d-~~rg~~ 202 (955)
|+++.+..+.. .++...|+.... ..++|+|+||++|.+++.+ +...+.++++|||||||++.+ .+++..
T Consensus 177 Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~ 256 (300)
T 3fmo_B 177 QTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQ 256 (300)
T ss_dssp HHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHH
T ss_pred HHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHH
Confidence 99999988753 466777776543 3578999999999999865 445688999999999999987 678888
Q ss_pred HHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEE
Q 002183 203 WEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (955)
Q Consensus 203 ~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~ 244 (955)
+..++..+++++|+++||||+++. +..+...+..+|..+.
T Consensus 257 ~~~i~~~~~~~~q~i~~SAT~~~~--v~~~a~~~l~~p~~i~ 296 (300)
T 3fmo_B 257 SIRIQRMLPRNCQMLLFSATFEDS--VWKFAQKVVPDPNVIK 296 (300)
T ss_dssp HHHHHTTSCTTCEEEEEESCCCHH--HHHHHHHHSSSCEEEE
T ss_pred HHHHHHhCCCCCEEEEEeccCCHH--HHHHHHHHCCCCeEEE
Confidence 888888899999999999999964 4466666666665543
No 65
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.94 E-value=7.2e-26 Score=234.37 Aligned_cols=177 Identities=21% Similarity=0.174 Sum_probs=150.6
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh------cCCeEEEEccChhhHHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLKALSNQKYR 137 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~------~~~~vl~l~PtkaLa~Q~~~ 137 (955)
........++|. |+|+|.++++.+.+|+++++++|||+|||++|.++++..+. .+.+++|++|+++|+.|+++
T Consensus 11 ~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~ 90 (207)
T 2gxq_A 11 EILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVAS 90 (207)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHH
Confidence 344445567886 99999999999999999999999999999999999998874 46789999999999999999
Q ss_pred HHHHhcC--CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHH
Q 002183 138 ELHQEFK--DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESII 208 (955)
Q Consensus 138 ~l~~~~~--~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~ 208 (955)
++...++ .++.++|+... ..+++|+|+||+++.+++.++...+.++++||+||||++.+.+++..+..++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~ 170 (207)
T 2gxq_A 91 ELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLS 170 (207)
T ss_dssp HHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHH
Confidence 9999876 57778887653 23689999999999999888777789999999999999998889999999999
Q ss_pred hCCCcceEEEeccccCChHHHHHHHhhhcCCCeEE
Q 002183 209 FLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHV 243 (955)
Q Consensus 209 ~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v 243 (955)
.++++.|++++|||+++. +.+....+.++|..+
T Consensus 171 ~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~p~~i 203 (207)
T 2gxq_A 171 ATPPSRQTLLFSATLPSW--AKRLAERYMKNPVLI 203 (207)
T ss_dssp TSCTTSEEEEECSSCCHH--HHHHHHHHCSSCEEE
T ss_pred hCCccCeEEEEEEecCHH--HHHHHHHHcCCCeEE
Confidence 999999999999999854 334455555556544
No 66
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.94 E-value=7e-26 Score=239.71 Aligned_cols=180 Identities=22% Similarity=0.208 Sum_probs=149.1
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh-------cCCeEEEEccChhhHHH
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-------DKQRVIYTSPLKALSNQ 134 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-------~~~~vl~l~PtkaLa~Q 134 (955)
+.........++|. |+|+|.++++.+.+|++++++||||+|||++|++|++..+. .+.++||++|+++|++|
T Consensus 33 ~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q 112 (236)
T 2pl3_A 33 SKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQ 112 (236)
T ss_dssp CHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHH
Confidence 33444445567887 99999999999999999999999999999999999988763 47889999999999999
Q ss_pred HHHHHHHhcC----CeeEEecccccC------CCCCEEEEeHHHHHHHHhcC-CccCCccceEEEEccccCCCCCChHHH
Q 002183 135 KYRELHQEFK----DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRG-SEVLKEVAWVIFDEIHYMKDRERGVVW 203 (955)
Q Consensus 135 ~~~~l~~~~~----~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~~vIiDEaH~l~d~~rg~~~ 203 (955)
+++.++.++. .++.++|+.... .+++|+|+||+++.+.+.+. ...+.++++||+||||++.+++++..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~ 192 (236)
T 2pl3_A 113 TFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTM 192 (236)
T ss_dssp HHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHH
T ss_pred HHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHH
Confidence 9999999875 577788876532 36899999999999887664 355789999999999999999999999
Q ss_pred HHHHHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEE
Q 002183 204 EESIIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (955)
Q Consensus 204 ~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~ 244 (955)
..++..+++..|+++||||+++. +.++......+|..+.
T Consensus 193 ~~i~~~~~~~~~~l~~SAT~~~~--~~~~~~~~~~~p~~i~ 231 (236)
T 2pl3_A 193 NAVIENLPKKRQTLLFSATQTKS--VKDLARLSLKNPEYVW 231 (236)
T ss_dssp HHHHHTSCTTSEEEEEESSCCHH--HHHHHHHSCSSCEEEE
T ss_pred HHHHHhCCCCCeEEEEEeeCCHH--HHHHHHHhCCCCEEEE
Confidence 99999999999999999999854 3355555555565543
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.94 E-value=6.9e-26 Score=237.66 Aligned_cols=178 Identities=20% Similarity=0.214 Sum_probs=148.5
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh---cCCeEEEEccChhhHHHHHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR---DKQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~---~~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
........+||. |+|+|.++++.+.+|+++++++|||+|||++|.++++..+. .+.++||++|+++|++|+++.+.
T Consensus 24 ~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 103 (224)
T 1qde_A 24 NLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVM 103 (224)
T ss_dssp HHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHH
Confidence 344444567887 99999999999999999999999999999999999998874 35689999999999999999999
Q ss_pred HhcC----CeeEEecccccC------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhC
Q 002183 141 QEFK----DVGLMTGDVTLS------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL 210 (955)
Q Consensus 141 ~~~~----~vg~~tGd~~~~------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l 210 (955)
.++. .++.++|+.... .+++|+|+||+++.+.+.++...+.++++||+||||++.+++++..+..++..+
T Consensus 104 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~ 183 (224)
T 1qde_A 104 ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 183 (224)
T ss_dssp HHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhC
Confidence 8765 567778876542 248999999999999988877778999999999999999989999999999999
Q ss_pred CCcceEEEeccccCChHHHHHHHhhhcCCCeEEE
Q 002183 211 PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (955)
Q Consensus 211 ~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~ 244 (955)
++..|++++|||+++. +.+++..+...|..+.
T Consensus 184 ~~~~~~i~lSAT~~~~--~~~~~~~~~~~p~~i~ 215 (224)
T 1qde_A 184 PPTTQVVLLSATMPND--VLEVTTKFMRNPVRIL 215 (224)
T ss_dssp CTTCEEEEEESSCCHH--HHHHHHHHCSSCEEEC
T ss_pred CccCeEEEEEeecCHH--HHHHHHHHCCCCEEEE
Confidence 9999999999999864 4466666666665543
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.93 E-value=4.2e-26 Score=245.09 Aligned_cols=167 Identities=20% Similarity=0.233 Sum_probs=143.8
Q ss_pred hhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh-------cCCeEEEEccChhhHHHHHHHH
Q 002183 68 EMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-------DKQRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 68 ~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-------~~~~vl~l~PtkaLa~Q~~~~l 139 (955)
.....+||. |+|+|.++++.+..|++++++||||||||++|++|++..+. .+.++||++||++|+.|+++.+
T Consensus 67 ~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 146 (262)
T 3ly5_A 67 KAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVL 146 (262)
T ss_dssp HHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHH
Confidence 334558998 99999999999999999999999999999999999998774 4788999999999999999999
Q ss_pred HHhcC----CeeEEecccccC-------CCCCEEEEeHHHHHHHHhcCC-ccCCccceEEEEccccCCCCCChHHHHHHH
Q 002183 140 HQEFK----DVGLMTGDVTLS-------PNASCLVMTTEILRGMLYRGS-EVLKEVAWVIFDEIHYMKDRERGVVWEESI 207 (955)
Q Consensus 140 ~~~~~----~vg~~tGd~~~~-------~~~~IlV~Tpe~L~~~l~~~~-~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii 207 (955)
++++. .++.++|+.... .+++|+|+||+++.+++.+.. ..+.++++||+||||++.+++++..+..++
T Consensus 147 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~ 226 (262)
T 3ly5_A 147 KELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII 226 (262)
T ss_dssp HHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHH
T ss_pred HHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHH
Confidence 99876 567788876532 358999999999998877653 567899999999999999999999999999
Q ss_pred HhCCCcceEEEeccccCChHHHHHHHhhh
Q 002183 208 IFLPPAIKMVFLSATMSNATQFAEWICHL 236 (955)
Q Consensus 208 ~~l~~~~~~v~lSAT~~n~~~~~~~l~~~ 236 (955)
..+++..|+++||||+++. +.++....
T Consensus 227 ~~~~~~~q~l~~SAT~~~~--v~~~~~~~ 253 (262)
T 3ly5_A 227 KLLPTRRQTMLFSATQTRK--VEDLARIS 253 (262)
T ss_dssp HHSCSSSEEEEECSSCCHH--HHHHHHHH
T ss_pred HhCCCCCeEEEEEecCCHH--HHHHHHHH
Confidence 9999999999999999855 33444433
No 69
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.93 E-value=2.4e-25 Score=238.15 Aligned_cols=181 Identities=16% Similarity=0.153 Sum_probs=150.0
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc------------CCeEEEEccCh
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD------------KQRVIYTSPLK 129 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~------------~~~vl~l~Ptk 129 (955)
+..........||. |+|+|.++++.+.+|++++++||||||||++|++|++..+.. +.++||++||+
T Consensus 31 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~ 110 (253)
T 1wrb_A 31 DPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTR 110 (253)
T ss_dssp CCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCH
Confidence 33344444567887 999999999999999999999999999999999999988743 35899999999
Q ss_pred hhHHHHHHHHHHhcC----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCC
Q 002183 130 ALSNQKYRELHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE 198 (955)
Q Consensus 130 aLa~Q~~~~l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~ 198 (955)
+|++|++++++.+.. .++.++|+... ..+++|+|+||++|.+++.++...+.++++||+||||++.+++
T Consensus 111 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~ 190 (253)
T 1wrb_A 111 ELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMG 190 (253)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCc
Confidence 999999999998765 46677787643 3468999999999999998887778999999999999999999
Q ss_pred ChHHHHHHHHh--CCC--cceEEEeccccCChHHHHHHHhhhcCCCeEEEe
Q 002183 199 RGVVWEESIIF--LPP--AIKMVFLSATMSNATQFAEWICHLHKQPCHVVY 245 (955)
Q Consensus 199 rg~~~~~ii~~--l~~--~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~ 245 (955)
++..+..++.. ++. +.|+++||||+++. +.++...+..++..+..
T Consensus 191 ~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~--~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 191 FEPQIRKIIEESNMPSGINRQTLMFSATFPKE--IQKLAADFLYNYIFMTV 239 (253)
T ss_dssp CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHH--HHHHHHHHCSSCEEEEE
T ss_pred hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHH--HHHHHHHHcCCCEEEEE
Confidence 99999999884 444 78999999999854 44666666556665543
No 70
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=238.80 Aligned_cols=180 Identities=15% Similarity=0.175 Sum_probs=151.3
Q ss_pred CCCchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHHHH
Q 002183 63 PVYNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRE 138 (955)
Q Consensus 63 ~~~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~~~ 138 (955)
+.........+||. |+++|.++++.+.+|++++++||||||||++|.++++..+.. +.++||++|+++|++|++++
T Consensus 51 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~ 130 (249)
T 3ber_A 51 TDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQ 130 (249)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHH
Confidence 33444555678996 999999999999999999999999999999999999887643 45799999999999999999
Q ss_pred HHHhcC----CeeEEeccccc-------CCCCCEEEEeHHHHHHHHhc-CCccCCccceEEEEccccCCCCCChHHHHHH
Q 002183 139 LHQEFK----DVGLMTGDVTL-------SPNASCLVMTTEILRGMLYR-GSEVLKEVAWVIFDEIHYMKDRERGVVWEES 206 (955)
Q Consensus 139 l~~~~~----~vg~~tGd~~~-------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~i 206 (955)
++.++. .++.++|+... ..+++|+|+||++|.+.+.+ ....+.++++||+||||++.+++++..+..+
T Consensus 131 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i 210 (249)
T 3ber_A 131 FEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKI 210 (249)
T ss_dssp HHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHH
T ss_pred HHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHH
Confidence 988754 67788887643 35789999999999988875 3445789999999999999999999999999
Q ss_pred HHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEEE
Q 002183 207 IIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHVV 244 (955)
Q Consensus 207 i~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~ 244 (955)
+..+++..|+++||||+++. +.+++.....+|..+.
T Consensus 211 ~~~~~~~~~~l~~SAT~~~~--v~~~~~~~l~~p~~i~ 246 (249)
T 3ber_A 211 LKVIPRDRKTFLFSATMTKK--VQKLQRAALKNPVKCA 246 (249)
T ss_dssp HHSSCSSSEEEEEESSCCHH--HHHHHHHHCSSCEEEE
T ss_pred HHhCCCCCeEEEEeccCCHH--HHHHHHHHCCCCEEEE
Confidence 99999999999999999854 4466666666666553
No 71
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.7e-25 Score=236.55 Aligned_cols=180 Identities=20% Similarity=0.218 Sum_probs=144.7
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh----cCCeEEEEccChhhHHHHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR----DKQRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~----~~~~vl~l~PtkaLa~Q~~~~l 139 (955)
.........||. |+|+|.++++.+.+|++++++||||||||++|++|++..+. .+.++||++||++|++|+++++
T Consensus 39 ~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 118 (245)
T 3dkp_A 39 RLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHREL 118 (245)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHH
Confidence 333444567998 99999999999999999999999999999999999998885 4668999999999999999999
Q ss_pred HHhcCC----eeEEecccc--------cCCCCCEEEEeHHHHHHHHhcC--CccCCccceEEEEccccCCCC---CChHH
Q 002183 140 HQEFKD----VGLMTGDVT--------LSPNASCLVMTTEILRGMLYRG--SEVLKEVAWVIFDEIHYMKDR---ERGVV 202 (955)
Q Consensus 140 ~~~~~~----vg~~tGd~~--------~~~~~~IlV~Tpe~L~~~l~~~--~~~l~~l~~vIiDEaH~l~d~---~rg~~ 202 (955)
++++.. +..++|+.. ...+++|+|+||++|.+++.+. ...+.++++||+||||++.++ ++...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 198 (245)
T 3dkp_A 119 IKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQ 198 (245)
T ss_dssp HHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHH
T ss_pred HHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHH
Confidence 998763 444444432 2346799999999999998776 356789999999999999874 44455
Q ss_pred HHHHHHhC-CCcceEEEeccccCChHHHHHHHhhhcCCCeEEEec
Q 002183 203 WEESIIFL-PPAIKMVFLSATMSNATQFAEWICHLHKQPCHVVYT 246 (955)
Q Consensus 203 ~~~ii~~l-~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v~~~ 246 (955)
+..++..+ +++.|+++||||+++ ++.+|+.....++..+...
T Consensus 199 ~~~i~~~~~~~~~~~~~~SAT~~~--~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 199 LASIFLACTSHKVRRAMFSATFAY--DVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp HHHHHHHCCCTTCEEEEEESSCCH--HHHHHHHHHSSSCEEEEEC
T ss_pred HHHHHHhcCCCCcEEEEEeccCCH--HHHHHHHHhCCCCEEEEeC
Confidence 55555554 467899999999984 5668888887777666543
No 72
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=3.1e-25 Score=232.06 Aligned_cols=177 Identities=20% Similarity=0.174 Sum_probs=146.3
Q ss_pred CchhhhhcCCCC-CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHHHHHH
Q 002183 65 YNGEMAKTYSFE-LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 65 ~~~~~~~~~~f~-l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
...+....+||+ |+|+|.++++.+.+|+++++++|||+|||++|.++++..+.. +.++||++|+++|++|++++++
T Consensus 24 ~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 103 (220)
T 1t6n_A 24 ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYE 103 (220)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 344445568998 999999999999999999999999999999999999988754 4589999999999999999999
Q ss_pred HhcC-----CeeEEecccccC--------CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCC-CCChHHHHHH
Q 002183 141 QEFK-----DVGLMTGDVTLS--------PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD-RERGVVWEES 206 (955)
Q Consensus 141 ~~~~-----~vg~~tGd~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d-~~rg~~~~~i 206 (955)
++.. .++.++|+.... ..++|+|+||+++.+++.++...+.++++||+||||++.+ .++...+..+
T Consensus 104 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i 183 (220)
T 1t6n_A 104 RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEI 183 (220)
T ss_dssp HHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHH
T ss_pred HHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHH
Confidence 8752 678888876532 3569999999999999888777789999999999999976 3556677778
Q ss_pred HHhCCCcceEEEeccccCChHHHHHHHhhhcCCCeEE
Q 002183 207 IIFLPPAIKMVFLSATMSNATQFAEWICHLHKQPCHV 243 (955)
Q Consensus 207 i~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~~~~~v 243 (955)
+..++++.|++++|||+++.. .+.+..+..+|..+
T Consensus 184 ~~~~~~~~~~i~~SAT~~~~~--~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 184 FRMTPHEKQVMMFSATLSKEI--RPVCRKFMQDPMEI 218 (220)
T ss_dssp HHTSCSSSEEEEEESCCCTTT--HHHHHTTCSSCEEE
T ss_pred HHhCCCcCeEEEEEeecCHHH--HHHHHHHcCCCeEE
Confidence 888888999999999998653 24555555555543
No 73
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.92 E-value=1.2e-23 Score=243.89 Aligned_cols=119 Identities=24% Similarity=0.223 Sum_probs=96.6
Q ss_pred HHHHHHHHHH--cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcC
Q 002183 317 IFKIVKMIME--RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (955)
Q Consensus 317 ~~~l~~~l~~--~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~g 394 (955)
+..++..+.. ..+.|+||||+|+..++.++..|.+.++.
T Consensus 460 ~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~--------------------------------------- 500 (822)
T 3jux_A 460 YEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIP--------------------------------------- 500 (822)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCC---------------------------------------
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCC---------------------------------------
Confidence 3445555543 24579999999999999999999987766
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCC--------CcEEEEecceeccCCCCcccCHHHHHHHhcc
Q 002183 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMP--------AKTVVFTAVKKWDGDSHRYIGSGEYIQMSGR 466 (955)
Q Consensus 395 i~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip--------~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GR 466 (955)
..++||+..+.++..+...|+.| .|+|||++++||+|++ +..+|| +|+. |.++..|.||+||
T Consensus 501 ~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVI----nte~----Pes~r~y~qriGR 570 (822)
T 3jux_A 501 HQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCII----GTER----HESRRIDNQLRGR 570 (822)
T ss_dssp CEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEE----ESSC----CSSHHHHHHHHTT
T ss_pred EEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEE----ecCC----CCCHHHHHHhhCc
Confidence 46899997666676677777766 5999999999999998 567999 7887 8999999999999
Q ss_pred CCCCCCCCceEEEEEeCC
Q 002183 467 AGRRGKDDRGICIIMVDE 484 (955)
Q Consensus 467 aGR~G~~~~g~~ii~~~~ 484 (955)
|||.|..|.+..|+...+
T Consensus 571 TGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 571 AGRQGDPGESIFFLSLED 588 (822)
T ss_dssp SSCSSCCCEEEEEEETTS
T ss_pred cccCCCCeeEEEEechhH
Confidence 999999766666665554
No 74
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.90 E-value=2.6e-22 Score=242.14 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=97.7
Q ss_pred CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHH
Q 002183 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (955)
Q Consensus 328 ~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R 407 (955)
.+.++||||+|++.|+.++..|...++. +.++||++++.+|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~---------------------------------------~~~lh~~~~~~~R 478 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIR---------------------------------------ARYLHHELDAFKR 478 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------EEEECTTCCHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCC---------------------------------------ceeecCCCCHHHH
Confidence 4579999999999999999999876553 6789999999999
Q ss_pred HHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCC-CcccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDS-HRYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 408 ~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~-~~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
..+++.|++|.++|||||+++++|+|+|++++|| .||... .-|.+..+|+||+|||||.| .|.+++++++.
T Consensus 479 ~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI----~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~ 550 (664)
T 1c4o_A 479 QALIRDLRLGHYDCLVGINLLREGLDIPEVSLVA----ILDADKEGFLRSERSLIQTIGRAARNA---RGEVWLYADRV 550 (664)
T ss_dssp HHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEE----ETTTTSCSGGGSHHHHHHHHGGGTTST---TCEEEEECSSC
T ss_pred HHHHHHhhcCCceEEEccChhhcCccCCCCCEEE----EeCCcccCCCCCHHHHHHHHCccCcCC---CCEEEEEEcCC
Confidence 9999999999999999999999999999999998 555421 12679999999999999986 48888888664
No 75
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.87 E-value=1e-20 Score=228.16 Aligned_cols=112 Identities=20% Similarity=0.287 Sum_probs=97.3
Q ss_pred CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHH
Q 002183 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (955)
Q Consensus 328 ~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R 407 (955)
.+.++||||+|++.|+.++..|...++. +.++||++++.+|
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~---------------------------------------~~~lh~~~~~~~R 484 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIK---------------------------------------VNYLHSEIKTLER 484 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------EEEECTTCCHHHH
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCC---------------------------------------eEEEeCCCCHHHH
Confidence 4578999999999999999999876554 6789999999999
Q ss_pred HHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCC-cccCHHHHHHHhccCCCCCCCCceEEEEEeCCc
Q 002183 408 ELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSH-RYIGSGEYIQMSGRAGRRGKDDRGICIIMVDEQ 485 (955)
Q Consensus 408 ~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~-~~~s~~ey~Q~~GRaGR~G~~~~g~~ii~~~~~ 485 (955)
..+++.|++|.++|||||+++++|+|+|++++|| .||...+ -|.+...|+||+|||||.+ .|.+++++++.
T Consensus 485 ~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi----~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~ 556 (661)
T 2d7d_A 485 IEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA----ILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKI 556 (661)
T ss_dssp HHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEE----ETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSC
T ss_pred HHHHHHHhcCCeEEEEecchhhCCcccCCCCEEE----EeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCC
Confidence 9999999999999999999999999999999998 5554211 1678999999999999983 58888888664
No 76
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.85 E-value=2.1e-19 Score=212.21 Aligned_cols=125 Identities=21% Similarity=0.218 Sum_probs=106.4
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----Ce
Q 002183 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----DV 146 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~v 146 (955)
..+||.|+++|..+++.+.+|+ ++.+.||+|||++|.+|++.....|..++|++||+.||.|.+..+..++. .+
T Consensus 74 R~lG~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv 151 (997)
T 2ipc_A 74 RYLGMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSV 151 (997)
T ss_dssp HHTCCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred HHhCCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 4589999999999999999998 99999999999999999976656788999999999999999998887754 78
Q ss_pred eEEecccccC-----CCCCEEEEeHHHH-HHHHhcCC------ccCC---ccceEEEEccccCC-CC
Q 002183 147 GLMTGDVTLS-----PNASCLVMTTEIL-RGMLYRGS------EVLK---EVAWVIFDEIHYMK-DR 197 (955)
Q Consensus 147 g~~tGd~~~~-----~~~~IlV~Tpe~L-~~~l~~~~------~~l~---~l~~vIiDEaH~l~-d~ 197 (955)
++++|+.+.. ..++|+|+||++| .+++..+. ..++ ++.++|+||||.|+ |.
T Consensus 152 ~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDe 218 (997)
T 2ipc_A 152 GVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDE 218 (997)
T ss_dssp EECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSS
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhC
Confidence 8899887532 2689999999999 67776542 3467 89999999999876 44
No 77
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.85 E-value=3.3e-21 Score=200.45 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=112.3
Q ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc------CCeEEEEccChhhHHH-HHHHHHHhcC
Q 002183 72 TYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD------KQRVIYTSPLKALSNQ-KYRELHQEFK 144 (955)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~------~~~vl~l~PtkaLa~Q-~~~~l~~~~~ 144 (955)
..+++|+|+|.++++.+.+++++++.+|||+|||++|.+++...+.. +.++||++|+++|++| +.+.+..+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999999999998877643 6799999999999999 6677777654
Q ss_pred ---CeeEEecccccCC-------CCCEEEEeHHHHHHHHhcCC------ccCCccceEEEEccccCCCCCChHH-HHHHH
Q 002183 145 ---DVGLMTGDVTLSP-------NASCLVMTTEILRGMLYRGS------EVLKEVAWVIFDEIHYMKDRERGVV-WEESI 207 (955)
Q Consensus 145 ---~vg~~tGd~~~~~-------~~~IlV~Tpe~L~~~l~~~~------~~l~~l~~vIiDEaH~l~d~~rg~~-~~~ii 207 (955)
.++.++|+..... .++|+|+||++|.+++.... ..+.++++||+||||++.+.++... +...+
T Consensus 109 ~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~ 188 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 188 (216)
T ss_dssp TTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHH
T ss_pred cCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHH
Confidence 6778888776543 38999999999998887643 4578899999999999986533332 22222
Q ss_pred HhC-------------CCcceEEEeccc
Q 002183 208 IFL-------------PPAIKMVFLSAT 222 (955)
Q Consensus 208 ~~l-------------~~~~~~v~lSAT 222 (955)
... .+..++++||||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 189 MQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHhcccccccccccCCCCcceEEEeecC
Confidence 211 157899999998
No 78
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.84 E-value=1.6e-20 Score=204.13 Aligned_cols=146 Identities=17% Similarity=0.148 Sum_probs=122.2
Q ss_pred CCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC-CeEEEEccChhhHHHHHHHHHHhcC----CeeEE
Q 002183 75 FELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK-QRVIYTSPLKALSNQKYRELHQEFK----DVGLM 149 (955)
Q Consensus 75 f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~-~~vl~l~PtkaLa~Q~~~~l~~~~~----~vg~~ 149 (955)
++|+|+|.++++.+..+.+.++++|||+|||+++..++...+..+ .++||++|+++|++|+++++.+++. .++.+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~ 191 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKI 191 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEEC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEE
Confidence 689999999999988778899999999999999988887776554 4999999999999999999998865 35566
Q ss_pred ecccccC----CCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccCC
Q 002183 150 TGDVTLS----PNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSN 225 (955)
Q Consensus 150 tGd~~~~----~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n 225 (955)
+|+.... ...+|+|+||+.+.+. ....+.++++||+||||++. +..+..++..+....++++||||+++
T Consensus 192 ~~~~~~~~~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 192 GGGASKDDKYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCMFKFGLSGSLRD 264 (282)
T ss_dssp STTCSSTTCCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCCEEEEECSSCCT
T ss_pred eCCCcchhhhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCCeEEEEeCCCCC
Confidence 6665543 5789999999987543 23457789999999999997 45777888888778999999999987
Q ss_pred hH
Q 002183 226 AT 227 (955)
Q Consensus 226 ~~ 227 (955)
..
T Consensus 265 ~~ 266 (282)
T 1rif_A 265 GK 266 (282)
T ss_dssp TS
T ss_pred cc
Confidence 64
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.82 E-value=4.5e-20 Score=183.05 Aligned_cols=128 Identities=23% Similarity=0.356 Sum_probs=108.6
Q ss_pred cHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCe
Q 002183 316 DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395 (955)
Q Consensus 316 ~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi 395 (955)
++..+.+.+......++||||+++..|+.++..|...++. +
T Consensus 22 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~---------------------------------------~ 62 (163)
T 2hjv_A 22 KFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYP---------------------------------------C 62 (163)
T ss_dssp HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------E
T ss_pred HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCc---------------------------------------E
Confidence 4455666666667789999999999999999999875443 7
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCc
Q 002183 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDR 475 (955)
Q Consensus 396 ~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~ 475 (955)
..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|| +||. |.++.+|+||+||+||.|+.
T Consensus 63 ~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi----~~~~----p~~~~~~~qr~GR~~R~g~~-- 132 (163)
T 2hjv_A 63 DKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVI----NYDL----PLEKESYVHRTGRTGRAGNK-- 132 (163)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEE----ESSC----CSSHHHHHHHTTTSSCTTCC--
T ss_pred EEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEE----EeCC----CCCHHHHHHhccccCcCCCC--
Confidence 8999999999999999999999999999999999999999999999 8888 89999999999999999984
Q ss_pred eEEEEEeCCcccHHHHHH
Q 002183 476 GICIIMVDEQMEMNTLKD 493 (955)
Q Consensus 476 g~~ii~~~~~~~~~~~~~ 493 (955)
|.+++++++. +...+++
T Consensus 133 g~~~~~~~~~-~~~~~~~ 149 (163)
T 2hjv_A 133 GKAISFVTAF-EKRFLAD 149 (163)
T ss_dssp EEEEEEECGG-GHHHHHH
T ss_pred ceEEEEecHH-HHHHHHH
Confidence 6666666544 3333333
No 80
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.82 E-value=2.3e-19 Score=212.26 Aligned_cols=120 Identities=19% Similarity=0.217 Sum_probs=87.8
Q ss_pred CCCCCCHHHHHHHHH----HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeE
Q 002183 73 YSFELDPFQRVSVAC----LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGL 148 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~----l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~ 148 (955)
.||+|+|+|.+++.. +..|+++++.||||+|||++|++|++. .+.+++|++||++|+.|+++++.....++..
T Consensus 4 ~~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~---~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~ 80 (540)
T 2vl7_A 4 LKLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQ---LKKKVLIFTRTHSQLDSIYKNAKLLGLKTGF 80 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHH---HTCEEEEEESCHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHhcCCcEEE
Confidence 478999999998654 578999999999999999999999755 3889999999999999999999875334444
Q ss_pred Eecccc------------------------------------------------------cCCCCCEEEEeHHHHHHHHh
Q 002183 149 MTGDVT------------------------------------------------------LSPNASCLVMTTEILRGMLY 174 (955)
Q Consensus 149 ~tGd~~------------------------------------------------------~~~~~~IlV~Tpe~L~~~l~ 174 (955)
+.|... ....++|+|+|+..|.+...
T Consensus 81 l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~ 160 (540)
T 2vl7_A 81 LIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPI 160 (540)
T ss_dssp C---------------------------------------------------------CTTGGGCSEEEEETHHHHSHHH
T ss_pred ecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHH
Confidence 433110 01257999999999986443
Q ss_pred cCC-------ccCCccceEEEEccccCC
Q 002183 175 RGS-------EVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 175 ~~~-------~~l~~l~~vIiDEaH~l~ 195 (955)
+.. ..+.+..+|||||||.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 161 RNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHhhCcccccccCcCCCEEEEEccccHH
Confidence 221 135678899999999993
No 81
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=194.69 Aligned_cols=159 Identities=21% Similarity=0.312 Sum_probs=122.7
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh-c----CCeEEEEccChhhHHHHHHHHHHhcC-
Q 002183 71 KTYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-D----KQRVIYTSPLKALSNQKYRELHQEFK- 144 (955)
Q Consensus 71 ~~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~----~~~vl~l~PtkaLa~Q~~~~l~~~~~- 144 (955)
.+..+.++++|.++++.+..|++++++||||||||+++..+++.... . +.++++++|+++|+.|+++.+...++
T Consensus 56 ~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 56 ERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 34567789999999999999999999999999999988888776553 2 34899999999999999999988776
Q ss_pred C----eeEEeccccc--CCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccC-CCCCCh-HHHHHHHHhCCCcceE
Q 002183 145 D----VGLMTGDVTL--SPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYM-KDRERG-VVWEESIIFLPPAIKM 216 (955)
Q Consensus 145 ~----vg~~tGd~~~--~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l-~d~~rg-~~~~~ii~~l~~~~~~ 216 (955)
. +|.-...... .++++|+|+||++|.+++.. .++++++||+||||.+ .+.++. ..+..++... ++.|+
T Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~ 211 (235)
T 3llm_A 136 EPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRI 211 (235)
T ss_dssp CTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEE
T ss_pred ccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeE
Confidence 3 3332221121 25688999999999998876 3889999999999985 343333 2334444444 57999
Q ss_pred EEeccccCChHHHHHHHh
Q 002183 217 VFLSATMSNATQFAEWIC 234 (955)
Q Consensus 217 v~lSAT~~n~~~~~~~l~ 234 (955)
+++|||+++.. +++|++
T Consensus 212 il~SAT~~~~~-~~~~~~ 228 (235)
T 3llm_A 212 VLMSATIDTSM-FCEYFF 228 (235)
T ss_dssp EEEECSSCCHH-HHHHTT
T ss_pred EEEecCCCHHH-HHHHcC
Confidence 99999998766 888875
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=8.6e-20 Score=183.29 Aligned_cols=118 Identities=21% Similarity=0.343 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEee
Q 002183 319 KIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVH 398 (955)
Q Consensus 319 ~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~ 398 (955)
.+...+......++||||+++..|+.++..|...++. +..+
T Consensus 24 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~---------------------------------------~~~~ 64 (175)
T 2rb4_A 24 ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQ---------------------------------------VSLL 64 (175)
T ss_dssp HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCC---------------------------------------EEEE
T ss_pred HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCc---------------------------------------EEEE
Confidence 4444444455679999999999999999999875443 7899
Q ss_pred cCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcc------cCHHHHHHHhccCCCCCC
Q 002183 399 HSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRY------IGSGEYIQMSGRAGRRGK 472 (955)
Q Consensus 399 H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~------~s~~ey~Q~~GRaGR~G~ 472 (955)
||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|| +||. | .++.+|+||+|||||.|.
T Consensus 65 ~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi----~~d~----p~~~~~~~~~~~~~qr~GR~gR~g~ 136 (175)
T 2rb4_A 65 SGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVV----NFDL----PVKQGEEPDYETYLHRIGRTGRFGK 136 (175)
T ss_dssp CSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEE----ESSC----CC--CCSCCHHHHHHHHCBC----C
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEE----EeCC----CCCccccCCHHHHHHHhcccccCCC
Confidence 9999999999999999999999999999999999999999999 7777 6 899999999999999997
Q ss_pred CCceEEEEEeCCc
Q 002183 473 DDRGICIIMVDEQ 485 (955)
Q Consensus 473 ~~~g~~ii~~~~~ 485 (955)
.|.+++++++.
T Consensus 137 --~g~~~~~~~~~ 147 (175)
T 2rb4_A 137 --KGLAFNMIEVD 147 (175)
T ss_dssp --CEEEEEEECGG
T ss_pred --CceEEEEEccc
Confidence 47777777554
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.81 E-value=8.7e-20 Score=181.39 Aligned_cols=139 Identities=21% Similarity=0.329 Sum_probs=108.2
Q ss_pred HHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeE
Q 002183 317 IFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIA 396 (955)
Q Consensus 317 ~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~ 396 (955)
...+.+.+......++||||+++..|+.++..|...++ ++.
T Consensus 18 ~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~---------------------------------------~~~ 58 (165)
T 1fuk_A 18 YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKF---------------------------------------TVS 58 (165)
T ss_dssp HHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTC---------------------------------------CEE
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC---------------------------------------CEE
Confidence 34455555555678999999999999999999976443 378
Q ss_pred eecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCce
Q 002183 397 VHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRG 476 (955)
Q Consensus 397 ~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g 476 (955)
.+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|| .||. |.++.+|+||+|||||.|.. |
T Consensus 59 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi----~~~~----p~~~~~~~qr~GR~gR~g~~--g 128 (165)
T 1fuk_A 59 AIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI----NYDL----PANKENYIHRIGRGGRFGRK--G 128 (165)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEE----ESSC----CSSGGGGGGSSCSCC-------C
T ss_pred EEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEE----EeCC----CCCHHHHHHHhcccccCCCC--c
Confidence 999999999999999999999999999999999999999999999 7888 89999999999999999975 5
Q ss_pred EEEEEeCCc--ccHHHHHHhHhCCCCcccc
Q 002183 477 ICIIMVDEQ--MEMNTLKDMVLGKPAPLVS 504 (955)
Q Consensus 477 ~~ii~~~~~--~~~~~~~~l~~~~~~~l~s 504 (955)
.+++++++. .....+.+++....+++.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (165)
T 1fuk_A 129 VAINFVTNEDVGAMRELEKFYSTQIEELPS 158 (165)
T ss_dssp EEEEEEETTTHHHHHHHHHHSSCCCEECCS
T ss_pred eEEEEEcchHHHHHHHHHHHHccCccccCc
Confidence 555555443 2334455555555555443
No 84
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.81 E-value=3.8e-19 Score=184.25 Aligned_cols=123 Identities=24% Similarity=0.344 Sum_probs=107.3
Q ss_pred CCcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhc
Q 002183 314 GSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKR 393 (955)
Q Consensus 314 ~~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 393 (955)
..++..+.+.+.....+++||||+++..++.++..|...++
T Consensus 16 ~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~--------------------------------------- 56 (212)
T 3eaq_A 16 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGH--------------------------------------- 56 (212)
T ss_dssp TSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTC---------------------------------------
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC---------------------------------------
Confidence 34556666777766788999999999999999999976433
Q ss_pred CeEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCC
Q 002183 394 GIAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKD 473 (955)
Q Consensus 394 gi~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~ 473 (955)
++..+||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++|| +||. |.++..|+||+|||||.|..
T Consensus 57 ~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi----~~~~----p~~~~~~~qr~GR~gR~g~~ 128 (212)
T 3eaq_A 57 PAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVV----HYRL----PDRAEAYQHRSGRTGRAGRG 128 (212)
T ss_dssp CEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEE----ESSC----CSSHHHHHHHHTTBCCCC--
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEE----ECCC----CcCHHHHHHHhcccCCCCCC
Confidence 378999999999999999999999999999999999999999999999 8888 89999999999999999974
Q ss_pred CceEEEEEeCCc
Q 002183 474 DRGICIIMVDEQ 485 (955)
Q Consensus 474 ~~g~~ii~~~~~ 485 (955)
|.|++++++.
T Consensus 129 --g~~~~l~~~~ 138 (212)
T 3eaq_A 129 --GRVVLLYGPR 138 (212)
T ss_dssp --BEEEEEECGG
T ss_pred --CeEEEEEchh
Confidence 7788777655
No 85
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.81 E-value=1.1e-19 Score=181.87 Aligned_cols=121 Identities=23% Similarity=0.369 Sum_probs=106.8
Q ss_pred cHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCe
Q 002183 316 DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395 (955)
Q Consensus 316 ~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi 395 (955)
++..+...+......++||||+++..|+.++..|...++. +
T Consensus 18 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~---------------------------------------~ 58 (172)
T 1t5i_A 18 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFP---------------------------------------A 58 (172)
T ss_dssp HHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCC---------------------------------------E
T ss_pred HHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCC---------------------------------------E
Confidence 4455666666667789999999999999999999775443 7
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCc
Q 002183 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDR 475 (955)
Q Consensus 396 ~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~ 475 (955)
..+||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++|| +||. |.++.+|+||+|||||.|. .
T Consensus 59 ~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi----~~d~----p~~~~~~~qr~GR~~R~g~--~ 128 (172)
T 1t5i_A 59 IAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF----NYDM----PEDSDTYLHRVARAGRFGT--K 128 (172)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEE----ESSC----CSSHHHHHHHHHHHTGGGC--C
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEE----EECC----CCCHHHHHHHhcccccCCC--C
Confidence 8999999999999999999999999999999999999999999999 8888 8999999999999999998 4
Q ss_pred eEEEEEeCCc
Q 002183 476 GICIIMVDEQ 485 (955)
Q Consensus 476 g~~ii~~~~~ 485 (955)
|.+++++++.
T Consensus 129 g~~~~~~~~~ 138 (172)
T 1t5i_A 129 GLAITFVSDE 138 (172)
T ss_dssp CEEEEEECSH
T ss_pred cEEEEEEcCh
Confidence 6777777654
No 86
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=181.36 Aligned_cols=138 Identities=19% Similarity=0.228 Sum_probs=97.7
Q ss_pred cHHHHHHHHHHc-CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcC
Q 002183 316 DIFKIVKMIMER-KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (955)
Q Consensus 316 ~~~~l~~~l~~~-~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~g 394 (955)
++..+++.+... ...++||||+++..|+.++..|...++ +
T Consensus 32 K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~---------------------------------------~ 72 (185)
T 2jgn_A 32 KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY---------------------------------------A 72 (185)
T ss_dssp HHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTC---------------------------------------C
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCC---------------------------------------c
Confidence 344556666554 467899999999999999999976543 3
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCC
Q 002183 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDD 474 (955)
Q Consensus 395 i~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~ 474 (955)
+..+||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++|| .||. |.++.+|+||+|||||.|..
T Consensus 73 ~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI----~~d~----p~s~~~~~Qr~GR~~R~g~~- 143 (185)
T 2jgn_A 73 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI----NFDL----PSDIEEYVHRIGRTGRVGNL- 143 (185)
T ss_dssp EEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEE----ESSC----CSSHHHHHHHHTTBCCTTSC-
T ss_pred eEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEE----EeCC----CCCHHHHHHHccccCCCCCC-
Confidence 78999999999999999999999999999999999999999999999 8888 89999999999999999974
Q ss_pred ceEEEEEeCCc--ccHHHHHHhHhCCCCcc
Q 002183 475 RGICIIMVDEQ--MEMNTLKDMVLGKPAPL 502 (955)
Q Consensus 475 ~g~~ii~~~~~--~~~~~~~~l~~~~~~~l 502 (955)
|.+++++++. .....+.+++.....++
T Consensus 144 -g~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 172 (185)
T 2jgn_A 144 -GLATSFFNERNINITKDLLDLLVEAKQEV 172 (185)
T ss_dssp -EEEEEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred -cEEEEEEchhhHHHHHHHHHHHHhccCCC
Confidence 6777666543 23344444444333333
No 87
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=1.1e-18 Score=184.06 Aligned_cols=142 Identities=21% Similarity=0.184 Sum_probs=115.9
Q ss_pred cCCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-C-eeEE
Q 002183 72 TYSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-D-VGLM 149 (955)
Q Consensus 72 ~~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~-vg~~ 149 (955)
.++++|+++|.+++..+..+.++++++|||+|||.++..++... +.+++|++|+++|++|+++++.+ |+ . ++.+
T Consensus 89 ~~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~ 164 (237)
T 2fz4_A 89 DAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEF 164 (237)
T ss_dssp CCCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEE
T ss_pred cCCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEE
Confidence 45678999999999999888899999999999999998876654 78899999999999999999999 56 6 8889
Q ss_pred ecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccCChH
Q 002183 150 TGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNAT 227 (955)
Q Consensus 150 tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~ 227 (955)
+|+.. ...+|+|+|++.+...... ....+++||+||||++.+.. +..++..++ ..++++||||+++.+
T Consensus 165 ~g~~~--~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~----~~~i~~~~~-~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 165 SGRIK--ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAES----YVQIAQMSI-APFRLGLTATFERED 232 (237)
T ss_dssp SSSCB--CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTT----HHHHHHTCC-CSEEEEEEESCC---
T ss_pred eCCCC--CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChH----HHHHHHhcc-CCEEEEEecCCCCCC
Confidence 88765 4678999999998765432 23468999999999998754 445555555 578999999998654
No 88
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.78 E-value=6.4e-19 Score=179.11 Aligned_cols=136 Identities=20% Similarity=0.315 Sum_probs=106.2
Q ss_pred cHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCe
Q 002183 316 DIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGI 395 (955)
Q Consensus 316 ~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi 395 (955)
++..+++.+.. ...++||||+++..++.++..|...++ .+
T Consensus 42 K~~~L~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~g~---------------------------------------~~ 81 (191)
T 2p6n_A 42 KMVYLLECLQK-TPPPVLIFAEKKADVDAIHEYLLLKGV---------------------------------------EA 81 (191)
T ss_dssp HHHHHHHHHTT-SCSCEEEECSCHHHHHHHHHHHHHHTC---------------------------------------CE
T ss_pred HHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHHcCC---------------------------------------cE
Confidence 34455555544 346899999999999999999976443 37
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCc
Q 002183 396 AVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDR 475 (955)
Q Consensus 396 ~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~ 475 (955)
..+||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++|| .||. |.++.+|+||+|||||.|..
T Consensus 82 ~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI----~~d~----p~~~~~~~qr~GR~gR~g~~-- 151 (191)
T 2p6n_A 82 VAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVI----NYDM----PEEIENYVHRIGRTGCSGNT-- 151 (191)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEE----ESSC----CSSHHHHHHHHTTSCC---C--
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEE----EeCC----CCCHHHHHHHhCccccCCCC--
Confidence 8999999999999999999999999999999999999999999999 8888 89999999999999999985
Q ss_pred eEEEEEeCCccc---HHHHHHhHhCCCCc
Q 002183 476 GICIIMVDEQME---MNTLKDMVLGKPAP 501 (955)
Q Consensus 476 g~~ii~~~~~~~---~~~~~~l~~~~~~~ 501 (955)
|.+++++++..+ ...+.+++.....+
T Consensus 152 g~~i~l~~~~~~~~~~~~l~~~l~~~~~~ 180 (191)
T 2p6n_A 152 GIATTFINKACDESVLMDLKALLLEAKQK 180 (191)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEEcCchhHHHHHHHHHHHHHccCc
Confidence 566666654423 23444444433333
No 89
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.77 E-value=4e-18 Score=185.04 Aligned_cols=122 Identities=23% Similarity=0.353 Sum_probs=103.7
Q ss_pred CcHHHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcC
Q 002183 315 SDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRG 394 (955)
Q Consensus 315 ~~~~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~g 394 (955)
.++..+.+.+......++||||+++..++.++..|...++.
T Consensus 14 ~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~--------------------------------------- 54 (300)
T 3i32_A 14 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHP--------------------------------------- 54 (300)
T ss_dssp SHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCC---------------------------------------
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCC---------------------------------------
Confidence 45556666666667889999999999999999999775543
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCC
Q 002183 395 IAVHHSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDD 474 (955)
Q Consensus 395 i~~~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~ 474 (955)
+..+||+|++.+|+.+++.|++|.++|||||+++++|+|+|++++|| +||. |.++..|+||+|||||.|..
T Consensus 55 ~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI----~~d~----p~s~~~y~Qr~GRagR~g~~- 125 (300)
T 3i32_A 55 AQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVV----HYRM----PDRAEAYQHRSGRTGRAGRG- 125 (300)
T ss_dssp EEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEE----ESSC----CSSTTHHHHHHTCCC------
T ss_pred EEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEE----EcCC----CCCHHHHHHHccCcCcCCCC-
Confidence 78999999999999999999999999999999999999999999999 7888 88999999999999999984
Q ss_pred ceEEEEEeCCc
Q 002183 475 RGICIIMVDEQ 485 (955)
Q Consensus 475 ~g~~ii~~~~~ 485 (955)
|.|++++++.
T Consensus 126 -G~~i~l~~~~ 135 (300)
T 3i32_A 126 -GRVVLLYGPR 135 (300)
T ss_dssp -CEEEEEECSS
T ss_pred -ceEEEEeChH
Confidence 7777777654
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.75 E-value=3.2e-16 Score=185.98 Aligned_cols=120 Identities=19% Similarity=0.169 Sum_probs=96.0
Q ss_pred CCCCCHHHHHHHHH----HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC----C
Q 002183 74 SFELDPFQRVSVAC----LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK----D 145 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~----l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~----~ 145 (955)
||+++|.|.+++.. +..|+++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+++..+.. +
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~ 77 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKIREKRNIT 77 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCcc
Confidence 57899999997764 578999999999999999999999887 588999999999999999999987632 4
Q ss_pred eeEEeccccc----------------------------------------------------------CCCCCEEEEeHH
Q 002183 146 VGLMTGDVTL----------------------------------------------------------SPNASCLVMTTE 167 (955)
Q Consensus 146 vg~~tGd~~~----------------------------------------------------------~~~~~IlV~Tpe 167 (955)
+.+++|.... ...++|||+|+.
T Consensus 78 ~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~ 157 (551)
T 3crv_A 78 FSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYP 157 (551)
T ss_dssp EEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETH
T ss_pred EEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCch
Confidence 5555552211 125799999999
Q ss_pred HHHHHHhcCCc-cCCccceEEEEccccCCC
Q 002183 168 ILRGMLYRGSE-VLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 168 ~L~~~l~~~~~-~l~~l~~vIiDEaH~l~d 196 (955)
.|.+...+... ...+..+|||||||.+.+
T Consensus 158 ~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 158 YFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred HhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99876544432 224678999999999876
No 91
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.58 E-value=1.9e-19 Score=179.76 Aligned_cols=118 Identities=22% Similarity=0.339 Sum_probs=100.7
Q ss_pred HHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEee
Q 002183 319 KIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVH 398 (955)
Q Consensus 319 ~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~ 398 (955)
.+...+......++||||+++..|+.++..|...++ ++..+
T Consensus 20 ~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~---------------------------------------~~~~~ 60 (170)
T 2yjt_D 20 LLVHLLKQPEATRSIVFVRKRERVHELANWLREAGI---------------------------------------NNCYL 60 (170)
Confidence 344444444567899999999999999999976433 26789
Q ss_pred cCCCCHHHHHHHHHHHhcCCccEEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCCCCCCceEE
Q 002183 399 HSGLLPVIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGIC 478 (955)
Q Consensus 399 H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~G~~~~g~~ 478 (955)
||+|++.+|..+++.|++|.++|||||+++++|+|+|++++|| .||. |.++.+|+||+|||||.|+. |.+
T Consensus 61 ~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi----~~~~----p~~~~~~~qr~GR~~R~g~~--g~~ 130 (170)
T 2yjt_D 61 EGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVF----NFDM----PRSGDTYLHRIGRTARAGRK--GTA 130 (170)
Confidence 9999999999999999999999999999999999999999999 7888 89999999999999999984 566
Q ss_pred EEEeCCc
Q 002183 479 IIMVDEQ 485 (955)
Q Consensus 479 ii~~~~~ 485 (955)
++++++.
T Consensus 131 ~~~~~~~ 137 (170)
T 2yjt_D 131 ISLVEAH 137 (170)
Confidence 6665443
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.61 E-value=1.6e-14 Score=172.72 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHH----HHhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHHHHHh
Q 002183 75 FELDPFQRVSVA----CLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 75 f~l~~~Q~~ai~----~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
|+|+|.|.+.+. ++.+|+++++.||||+|||++|++|++..+. .+.+++|++||++|+.|+.+++...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHH
Confidence 789999999985 4578999999999999999999999888764 4789999999999999999998775
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.48 E-value=6.5e-14 Score=150.02 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=90.5
Q ss_pred cHHHHHHHHHHc--CCCcEEEEEcChHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhh
Q 002183 316 DIFKIVKMIMER--KFQPVIVFSFSRRECEQHAMSMSKL-DFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLK 392 (955)
Q Consensus 316 ~~~~l~~~l~~~--~~~~~IVF~~s~~~~~~la~~L~~~-~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~ 392 (955)
++..+.+.+... .+.++||||.++..++.++..|... ++.
T Consensus 97 K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~------------------------------------- 139 (271)
T 1z5z_A 97 KMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTE------------------------------------- 139 (271)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSC-------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCc-------------------------------------
Confidence 444555555443 5689999999999999999988652 332
Q ss_pred cCeEeecCCCCHHHHHHHHHHHhcC-Ccc-EEEEcccccccCCCCCcEEEEecceeccCCCCcccCHHHHHHHhccCCCC
Q 002183 393 RGIAVHHSGLLPVIKELVELLFQEG-LVK-ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRR 470 (955)
Q Consensus 393 ~gi~~~H~~l~~~~R~~v~~~F~~g-~i~-VLvaT~~la~Gidip~~~vVi~~~~~~d~~~~~~~s~~ey~Q~~GRaGR~ 470 (955)
+..+||++++.+|..+++.|++| .++ +|++|+++++|+|++++++|| .||. |++|..|.|++||++|.
T Consensus 140 --~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI----~~d~----~wnp~~~~Q~~gR~~R~ 209 (271)
T 1z5z_A 140 --VPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----HFDR----WWNPAVEDQATDRVYRI 209 (271)
T ss_dssp --CCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEE----ECSC----CSCTTTC----------
T ss_pred --EEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEE----EECC----CCChhHHHHHHHhcccc
Confidence 57899999999999999999998 777 799999999999999999999 8998 99999999999999999
Q ss_pred CCCCceEEEEEeCCc
Q 002183 471 GKDDRGICIIMVDEQ 485 (955)
Q Consensus 471 G~~~~g~~ii~~~~~ 485 (955)
|+.+...++.+....
T Consensus 210 Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 210 GQTRNVIVHKLISVG 224 (271)
T ss_dssp ----CCEEEEEEETT
T ss_pred CCCCceEEEEEeeCC
Confidence 998877777776554
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.57 E-value=1.3e-07 Score=112.86 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCCchHH--HHHHHHHHHH--hcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEe---
Q 002183 78 DPFQRVSVACLERNESVLVSAHTSAGKTA--VAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMT--- 150 (955)
Q Consensus 78 ~~~Q~~ai~~l~~g~~vlv~apTGsGKTl--~~~~~i~~~l--~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~t--- 150 (955)
++.|++|++.+..++.++++|++|+|||. .+.++.+..+ ..+.++++++||..++.+..+.+.......++-.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~ 230 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 78999999999999999999999999994 4555555544 3466899999999999998877765432221100
Q ss_pred ccccc-CCCC-CEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEecc
Q 002183 151 GDVTL-SPNA-SCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSA 221 (955)
Q Consensus 151 Gd~~~-~~~~-~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSA 221 (955)
..... .... .++-.+|+.. .+.+... ...+++++|+|||+++. ...+..++..++.+.|+|++.=
T Consensus 231 ~~~~~~~~Tih~ll~~~~~~~-~~~~~~~-~~l~~d~lIIDEAsml~----~~~~~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 231 KRIPEDASTLHRLLGAQPGSQ-RLRHHAG-NPLHLDVLVVDEASMID----LPMMSRLIDALPDHARVIFLGD 297 (608)
T ss_dssp CSCSCCCBTTTSCC------------CTT-SCCSCSEEEECSGGGCB----HHHHHHHHHTCCTTCEEEEEEC
T ss_pred hccchhhhhhHhhhccCCCch-HHHhccC-CCCCCCEEEEechhhCC----HHHHHHHHHhCCCCCEEEEEcc
Confidence 00000 0011 1222233321 1111111 12378999999999664 4567778888898899888753
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.34 E-value=2.4e-06 Score=100.85 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=87.9
Q ss_pred CCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccc
Q 002183 74 SFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV 153 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~ 153 (955)
++.+++.|++|+..+..+..+++.|++|+|||.+....+......+.++++++||...+....+....
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~------------ 254 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGR------------ 254 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTS------------
T ss_pred cCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcc------------
Confidence 78899999999999999999999999999999876554444456788999999999888776554310
Q ss_pred ccCCCCCEEEEeHHHHHHHH----hcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEec
Q 002183 154 TLSPNASCLVMTTEILRGML----YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 154 ~~~~~~~IlV~Tpe~L~~~l----~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lS 220 (955)
-..|..++.... ..........++||+||++++. ...+..++..++...+++++-
T Consensus 255 --------~a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 255 --------TASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp --------CEEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEE
T ss_pred --------cHHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEe
Confidence 122333332111 1111223467899999999886 456777777888777777763
No 96
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.26 E-value=5.1e-06 Score=95.90 Aligned_cols=124 Identities=14% Similarity=0.196 Sum_probs=81.7
Q ss_pred CCCC-CCHHHHHHHHHHhc----C-CcEEEEcCCCCchHHHHHHHHHHHHhcCC-eEEEEccChhhHHHHHHHHHHhcCC
Q 002183 73 YSFE-LDPFQRVSVACLER----N-ESVLVSAHTSAGKTAVAEYAIAMAFRDKQ-RVIYTSPLKALSNQKYRELHQEFKD 145 (955)
Q Consensus 73 ~~f~-l~~~Q~~ai~~l~~----g-~~vlv~apTGsGKTl~~~~~i~~~l~~~~-~vl~l~PtkaLa~Q~~~~l~~~~~~ 145 (955)
.+|. |++-|++|+..+.. + ..++|.|+.|+|||.+....+......+. ++++++||...+......+ +
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~----~- 95 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS----G- 95 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH----S-
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh----c-
Confidence 4555 99999999987632 2 38999999999999887655555555565 7999999988777655444 1
Q ss_pred eeEEecccccCCCCCEEEEeHHHHHHHH-----------hcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcc
Q 002183 146 VGLMTGDVTLSPNASCLVMTTEILRGML-----------YRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 214 (955)
Q Consensus 146 vg~~tGd~~~~~~~~IlV~Tpe~L~~~l-----------~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~ 214 (955)
+-+.|...+.... ......+...+++|+||+|++. ...+..++..++...
T Consensus 96 ---------------~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~~~~~~~~ 156 (459)
T 3upu_A 96 ---------------KEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYD----RKLFKILLSTIPPWC 156 (459)
T ss_dssp ---------------SCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCC----HHHHHHHHHHSCTTC
T ss_pred ---------------cchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCC----HHHHHHHHHhccCCC
Confidence 0122222221100 0122345678999999999875 445666666777666
Q ss_pred eEEEec
Q 002183 215 KMVFLS 220 (955)
Q Consensus 215 ~~v~lS 220 (955)
+++++.
T Consensus 157 ~~~~vG 162 (459)
T 3upu_A 157 TIIGIG 162 (459)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 666654
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.15 E-value=6.2e-06 Score=99.46 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHhcC-CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCC
Q 002183 76 ELDPFQRVSVACLERN-ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g-~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~ 145 (955)
.|++-|++|+..++.. .-.+|+||+|+|||.+....|.+.+.++.++|+++||..-++++.+.+.....+
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ 259 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQR 259 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCc
Confidence 4999999999887654 467899999999999988888888899999999999999999999998765443
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.01 E-value=2.8e-05 Score=93.16 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHHHHHhc
Q 002183 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
.+++.|.+|+..+..+...+|.||+|+|||.+....+...+. .+.++++++||...+.+..+.+.+..
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~ 248 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG 248 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcC
Confidence 489999999999887788999999999999987666655555 67899999999999999998887643
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=2.4e-05 Score=95.84 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHHHHHhc
Q 002183 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
.+++.|++|+..+..+..++|.||+|+|||.+....+...+. .+.++++++||...++++.+.+.+..
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 389999999999888778899999999999887666555554 68899999999999999999988753
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.86 E-value=6.8e-05 Score=91.75 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHHHHHhc
Q 002183 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEF 143 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~~~~ 143 (955)
.+++.|++|+..+..+...+|.||+|+|||.+....+...+. .+.++++++||...+++..+.+....
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 489999999999888788999999999999887655555554 57899999999999999988887643
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.50 E-value=0.00049 Score=83.05 Aligned_cols=67 Identities=22% Similarity=0.190 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC----CeEEEEccChhhHHHHHHHHHHhcC
Q 002183 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK----QRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~----~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
.|++-|++|+. ..+..++|.|+.|||||.+...-+...+..+ .+++++++|+..+.++.+++.+..+
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 48999999998 3467899999999999999888777777653 5899999999999999999988754
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.42 E-value=0.0014 Score=72.73 Aligned_cols=126 Identities=15% Similarity=0.217 Sum_probs=82.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHH-HHh-cCCeEEEEccChhhHHHHHHHHHHhcC---C--
Q 002183 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAM-AFR-DKQRVIYTSPLKALSNQKYRELHQEFK---D-- 145 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~-~l~-~~~~vl~l~PtkaLa~Q~~~~l~~~~~---~-- 145 (955)
.+|.|+|+|+..+..+...+-+++..+-+.|||.++...++. ++. .+..+++++|++.-|..+++.++..+. .
T Consensus 160 ~p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll 239 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (385)
T ss_dssp EECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTT
T ss_pred CCCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhh
Confidence 478999999999998765567899999999999876554443 343 467899999999999988877776542 1
Q ss_pred -eeE--Eec-ccccCCCCCEEEEe--HHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh
Q 002183 146 -VGL--MTG-DVTLSPNASCLVMT--TEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF 209 (955)
Q Consensus 146 -vg~--~tG-d~~~~~~~~IlV~T--pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~ 209 (955)
-.. .+. ......++.|.+.+ |+.++ + .+.+++|+||+|.+.+. ...|..+...
T Consensus 240 ~~~~~~~~~~~I~f~nGs~i~~lsa~~~slr-----G----~~~~~viiDE~a~~~~~--~el~~al~~~ 298 (385)
T 2o0j_A 240 QPGIVEWNKGSIELDNGSSIGAYASSPDAVR-----G----NSFAMIYIEDCAFIPNF--HDSWLAIQPV 298 (385)
T ss_dssp SCCEEEECSSEEEETTSCEEEEEECSHHHHH-----T----SCCSEEEEESGGGSTTH--HHHHHHHHHH
T ss_pred hhhhccCCccEEEeCCCCEEEEEECCCCCcc-----C----CCCCEEEechhhhcCCC--HHHHHHHHHH
Confidence 011 111 11122234444433 44443 2 24679999999988751 3445544433
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.21 E-value=0.0026 Score=75.57 Aligned_cols=140 Identities=13% Similarity=0.183 Sum_probs=89.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHH-HHHHHHhc-CCeEEEEccChhhHHHHHHHHHHhcCCee---
Q 002183 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEY-AIAMAFRD-KQRVIYTSPLKALSNQKYRELHQEFKDVG--- 147 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~-~i~~~l~~-~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg--- 147 (955)
.+|.|+|+|+..+..+...+.+++..+-|+|||.+... ++..++.. +.++++++|++..|...+..++..+....
T Consensus 160 ~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~ 239 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (592)
T ss_dssp BBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTT
T ss_pred ccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhh
Confidence 57889999999998886667799999999999987553 33344433 56899999999999999988877654221
Q ss_pred ---EE-ecc--cccCCCCCEEEE--eHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCC--CcceEE
Q 002183 148 ---LM-TGD--VTLSPNASCLVM--TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP--PAIKMV 217 (955)
Q Consensus 148 ---~~-tGd--~~~~~~~~IlV~--Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~--~~~~~v 217 (955)
.. ... .....+..|.+. .|+.++.. +.+++|+||+|.+.+. ...|+.+...+. .+.+++
T Consensus 240 ~~~~~~~~~~~i~~~nGs~i~~~s~~~~~lrG~---------~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~~~~~~ii 308 (592)
T 3cpe_A 240 QPGIVEWNKGSIELDNGSSIGAYASSPDAVRGN---------SFAMIYIEDCAFIPNF--HDSWLAIQPVISSGRRSKII 308 (592)
T ss_dssp SCCEEEECSSEEEETTSCEEEEEECCHHHHHHS---------CCSEEEEETGGGCTTH--HHHHHHHHHHHSSSSCCEEE
T ss_pred ccccccCCccEEEecCCCEEEEEeCCCCCccCC---------CcceEEEehhccCCch--hHHHHHHHHHhccCCCceEE
Confidence 11 011 112223334333 25555421 4679999999988652 255665544443 234444
Q ss_pred EeccccC
Q 002183 218 FLSATMS 224 (955)
Q Consensus 218 ~lSAT~~ 224 (955)
..| |+.
T Consensus 309 ~is-TP~ 314 (592)
T 3cpe_A 309 ITT-TPN 314 (592)
T ss_dssp EEE-CCC
T ss_pred EEe-CCC
Confidence 443 443
No 104
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.89 E-value=0.0046 Score=61.02 Aligned_cols=118 Identities=9% Similarity=0.091 Sum_probs=65.1
Q ss_pred CHHHHHHHHHH---------hcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHHHHHHHHHhcCCee
Q 002183 78 DPFQRVSVACL---------ERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQKYRELHQEFKDVG 147 (955)
Q Consensus 78 ~~~Q~~ai~~l---------~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg 147 (955)
++.|++++..+ ..|+.+++.+|+|+|||..+....-... ..|..++|+. ..++..+....+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~----- 89 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-TKDLIFRLKHLMDEG----- 89 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-HHHHHHHHHHHHHHT-----
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHHHHHhcCc-----
Confidence 67888888765 2578899999999999987754433333 4455555543 334444433332211
Q ss_pred EEecccccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCC-CCCChHHHHHHHHhC-CCcceEEEeccccCC
Q 002183 148 LMTGDVTLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMK-DRERGVVWEESIIFL-PPAIKMVFLSATMSN 225 (955)
Q Consensus 148 ~~tGd~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~-d~~rg~~~~~ii~~l-~~~~~~v~lSAT~~n 225 (955)
... .+... +.+.+++|+||++... +......+..++... ..+..+|+.|-..+.
T Consensus 90 ----------~~~-------~~~~~-------~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 90 ----------KDT-------KFLKT-------VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp ----------CCS-------HHHHH-------HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred ----------hHH-------HHHHH-------hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 000 12222 2256799999999643 221112233333333 245667776666554
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.80 E-value=0.0018 Score=66.27 Aligned_cols=93 Identities=14% Similarity=0.071 Sum_probs=59.0
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (955)
..|.-+++.+++|+|||..++-.+..+..++.+++|+.|...= . . ........|+ . ...+-+.+.+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~--~~~i~srlG~-----~---~~~~~~~~~~~ 76 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-S--IRNIQSRTGT-----S---LPSVEVESAPE 76 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-G--CSSCCCCCCC-----S---SCCEEESSTHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-H--HHHHHHhcCC-----C---ccccccCCHHH
Confidence 4566788899999999998887777777889999999887631 0 0 0011112221 1 11233555666
Q ss_pred HHHHHhcCCccCCccceEEEEccccCC
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
+...+..... -.+.++||+||++.+.
T Consensus 77 i~~~i~~~~~-~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 77 ILNYIMSNSF-NDETKVIGIDEVQFFD 102 (223)
T ss_dssp HHHHHHSTTS-CTTCCEEEECSGGGSC
T ss_pred HHHHHHHHhh-CCCCCEEEEecCccCc
Confidence 6665543221 2357899999999875
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.77 E-value=0.0035 Score=70.44 Aligned_cols=105 Identities=13% Similarity=0.006 Sum_probs=65.4
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGM 172 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~ 172 (955)
-.++.|+.|+|||....-. + ...+.++++||+++++++.+.+... |. ......-|.|.+.+.
T Consensus 163 v~~I~G~aGsGKTt~I~~~----~-~~~~~lVlTpT~~aa~~l~~kl~~~--------~~---~~~~~~~V~T~dsfL-- 224 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSR----V-NFEEDLILVPGRQAAEMIRRRANAS--------GI---IVATKDNVRTVDSFL-- 224 (446)
T ss_dssp EEEEEECTTSCHHHHHHHH----C-CTTTCEEEESCHHHHHHHHHHHTTT--------SC---CCCCTTTEEEHHHHH--
T ss_pred EEEEEcCCCCCHHHHHHHH----h-ccCCeEEEeCCHHHHHHHHHHhhhc--------Cc---cccccceEEEeHHhh--
Confidence 4678999999999865322 1 2257899999999999888777432 10 011234489998764
Q ss_pred HhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEec
Q 002183 173 LYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 173 l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lS 220 (955)
+.......-..++||||||-++. ...+..++...+. .+++++-
T Consensus 225 ~~~~~~~~~~~d~liiDE~sm~~----~~~l~~l~~~~~~-~~vilvG 267 (446)
T 3vkw_A 225 MNYGKGARCQFKRLFIDEGLMLH----TGCVNFLVEMSLC-DIAYVYG 267 (446)
T ss_dssp HTTTSSCCCCCSEEEEETGGGSC----HHHHHHHHHHTTC-SEEEEEE
T ss_pred cCCCCCCCCcCCEEEEeCcccCC----HHHHHHHHHhCCC-CEEEEec
Confidence 22222112247899999998663 2334444444443 5555554
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.74 E-value=0.0038 Score=62.34 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=60.0
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (955)
.|+-.++.+|+|||||..++-.+.....++.+++++.|.+. + .++.-.+.+-. .+. -..+.+.+++.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d--~--------r~~~~~i~s~~-g~~-~~a~~~~~~~~i 74 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID--N--------RYSKEDVVSHM-GEK-EQAVAIKNSREI 74 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-----------------CEEECTT-SCE-EECEEESSSTHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--c--------cchHHHHHhhc-CCc-eeeEeeCCHHHH
Confidence 34567889999999999888777777788999999999842 1 11111111110 000 011223333333
Q ss_pred HHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEe
Q 002183 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFL 219 (955)
Q Consensus 170 ~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~l 219 (955)
...+. .++++|++||++.+.. ..++.+-...+.+..+|+.
T Consensus 75 ~~~~~------~~~dvViIDEaqfl~~----~~v~~l~~l~~~~~~Vi~~ 114 (191)
T 1xx6_A 75 LKYFE------EDTEVIAIDEVQFFDD----EIVEIVNKIAESGRRVICA 114 (191)
T ss_dssp HHHCC------TTCSEEEECSGGGSCT----HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHh------ccCCEEEEECCCCCCH----HHHHHHHHHHhCCCEEEEE
Confidence 33221 2579999999999752 1233333333445555554
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.68 E-value=0.0026 Score=63.30 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=32.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccCh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Ptk 129 (955)
.|.-.++.+|+|+|||..+.-.+......+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 3566789999999999988666666667788999999984
No 109
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.014 Score=62.97 Aligned_cols=124 Identities=9% Similarity=0.088 Sum_probs=65.2
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhc-------CCeEEEEccCh-hhHHHHHHHHHHhcCCeeEEecccccCCCCC
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRD-------KQRVIYTSPLK-ALSNQKYRELHQEFKDVGLMTGDVTLSPNAS 160 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-------~~~vl~l~Ptk-aLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~ 160 (955)
..+.++++.||+|+|||.++-..+-..-.. ...++++--.. .=..+.+..+.+.+..... ++
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~-~~--------- 112 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENL-CG--------- 112 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC---C---------
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCC-Cc---------
Confidence 356789999999999999876654433221 12445543211 1123444444443321110 00
Q ss_pred EEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHh--C-CCcceEEEeccccCChH
Q 002183 161 CLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIF--L-PPAIKMVFLSATMSNAT 227 (955)
Q Consensus 161 IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~--l-~~~~~~v~lSAT~~n~~ 227 (955)
-.+.+.|..++......-...-+|++||+|++.+ ...+..++.. . ...+-+|+.++|+.+..
T Consensus 113 --~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 113 --DISLEALNFYITNVPKAKKRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp --CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred --hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 0123445544443211223456899999999983 2233333321 1 23567888999987654
No 110
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.27 E-value=0.0037 Score=59.81 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=25.5
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
.|+.+++.+|+|+|||..+....-.....|.+++|+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 6888999999999999876544333333454555553
No 111
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.12 E-value=0.016 Score=68.45 Aligned_cols=115 Identities=20% Similarity=0.238 Sum_probs=79.9
Q ss_pred CCCHHHHHHHHHHhc--CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccc
Q 002183 76 ELDPFQRVSVACLER--NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDV 153 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~--g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~ 153 (955)
.+|.-|.+|+..+.. ....++.|+-|.|||.+..+++.... .+++|++|+++=+...++ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~---~~~~vtAP~~~a~~~l~~-~~~~----------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVLAQ-FAGE----------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHHHH-HHGG-----------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH---hCcEEECCCHHHHHHHHH-HhhC-----------
Confidence 589999999998855 34578899999999988777776653 357999999987664433 3211
Q ss_pred ccCCCCCEEEEeHHHHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccCCh
Q 002183 154 TLSPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNA 226 (955)
Q Consensus 154 ~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~ 226 (955)
.|-+..|+.+.. ...+.++||||||=.+. .+.+..++. ....++||.|+...
T Consensus 240 ------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~----~~~~v~~~tTv~GY 291 (671)
T 2zpa_A 240 ------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVS----RFPRTLLTTTVQGY 291 (671)
T ss_dssp ------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHT----TSSEEEEEEEBSST
T ss_pred ------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHh----hCCeEEEEecCCcC
Confidence 133456765431 23468999999998886 445555544 23468889998654
No 112
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.11 E-value=0.013 Score=70.79 Aligned_cols=86 Identities=20% Similarity=0.173 Sum_probs=68.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc----CCeEEEEccChhhHHHHHHHHHHhcCCeeEEec
Q 002183 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~----~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tG 151 (955)
.|++-|++|+.. .+..++|.|+.|||||.+...-+...+.. ..++++++.|+..+.+..+++....+..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~----- 74 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK----- 74 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTT-----
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcc-----
Confidence 489999999985 46789999999999999887777766643 3589999999999999999998876431
Q ss_pred ccccCCCCCEEEEeHHHHHHHH
Q 002183 152 DVTLSPNASCLVMTTEILRGML 173 (955)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l 173 (955)
....+.|+|...+...+
T Consensus 75 -----~~~~~~v~Tfhs~~~~i 91 (673)
T 1uaa_A 75 -----EARGLMISTFHTLGLDI 91 (673)
T ss_dssp -----TTTTSEEEEHHHHHHHH
T ss_pred -----cccCCEEEeHHHHHHHH
Confidence 12357899998876433
No 113
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.90 E-value=0.013 Score=65.20 Aligned_cols=37 Identities=27% Similarity=0.312 Sum_probs=24.6
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhc------CCeEEEEc
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRD------KQRVIYTS 126 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~------~~~vl~l~ 126 (955)
.+.++++.||+|+|||..+.......... +..++++.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 45689999999999999875443332221 45566664
No 114
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.90 E-value=0.0091 Score=77.06 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=69.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcC------CeEEEEccChhhHHHHHHHHHHhcCCe
Q 002183 73 YSFELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDK------QRVIYTSPLKALSNQKYRELHQEFKDV 146 (955)
Q Consensus 73 ~~f~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~------~~vl~l~PtkaLa~Q~~~~l~~~~~~v 146 (955)
.+..+|+-|.++|.. .+.+++|+|..|||||.+..--++..+..+ .+++++++|++.++++.+++...++..
T Consensus 7 ~~~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp ---CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 556799999999985 488999999999999999888788777654 389999999999999999988765411
Q ss_pred eEEeccc-cc----CCCCCEEEEeHHHHHHHH
Q 002183 147 GLMTGDV-TL----SPNASCLVMTTEILRGML 173 (955)
Q Consensus 147 g~~tGd~-~~----~~~~~IlV~Tpe~L~~~l 173 (955)
..-..+. .+ ..-..+-|+|...+...+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~i~T~hsf~~~~ 116 (1232)
T 3u4q_A 85 LVQRPGSLHIRRQLSLLNRASISTLHSFCLQV 116 (1232)
T ss_dssp HHHSTTCHHHHHHHHHTTTSEEECHHHHHHHH
T ss_pred hhcCcchHHHHHHHhccCCCeEEeHHHHHHHH
Confidence 0000000 00 001356789988776543
No 115
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.89 E-value=0.012 Score=59.35 Aligned_cols=40 Identities=15% Similarity=0.043 Sum_probs=32.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChh
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKA 130 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Ptka 130 (955)
|.-.++.++.|||||..++-.+..+...+.+++++.|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 4456689999999999888888888888999999999863
No 116
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.87 E-value=0.017 Score=70.21 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc-C---CeEEEEccChhhHHHHHHHHHHhcCCeeEEec
Q 002183 76 ELDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD-K---QRVIYTSPLKALSNQKYRELHQEFKDVGLMTG 151 (955)
Q Consensus 76 ~l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-~---~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tG 151 (955)
.|++-|++|+.. .+..++|.|+.|||||.+...-+...+.. + .++++++.|+..+.++.+++....+..
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~----- 83 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA----- 83 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG-----
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc-----
Confidence 489999999985 45689999999999999988878777764 2 579999999999999999998875421
Q ss_pred ccccCCCCCEEEEeHHHHHHHHhcC-CccC-CccceEEEEccc
Q 002183 152 DVTLSPNASCLVMTTEILRGMLYRG-SEVL-KEVAWVIFDEIH 192 (955)
Q Consensus 152 d~~~~~~~~IlV~Tpe~L~~~l~~~-~~~l-~~l~~vIiDEaH 192 (955)
...+.|+|...+...+.+. ...+ -.-++-|+|+.+
T Consensus 84 ------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d 120 (724)
T 1pjr_A 84 ------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTD 120 (724)
T ss_dssp ------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHH
T ss_pred ------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHH
Confidence 1346899998876433221 1111 012356777654
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.78 E-value=0.026 Score=61.32 Aligned_cols=76 Identities=22% Similarity=0.357 Sum_probs=45.9
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (955)
+..+++.||+|+|||..+..........+..++|+... .+..+....+.. ...+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~----------------------~~~~~~~ 93 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD-DFAQAMVEHLKK----------------------GTINEFR 93 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH-HHHHHHHHHHHH----------------------TCHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH-HHHHHHHHHHHc----------------------CcHHHHH
Confidence 35899999999999998755444443446777777543 333333332221 0122222
Q ss_pred HHHhcCCccCCccceEEEEccccCCC
Q 002183 171 GMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 171 ~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
..+ .+.+++++||+|.+..
T Consensus 94 ~~~-------~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 94 NMY-------KSVDLLLLDDVQFLSG 112 (324)
T ss_dssp HHH-------HTCSEEEEECGGGGTT
T ss_pred HHh-------cCCCEEEEcCcccccC
Confidence 222 2357999999999875
No 118
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.76 E-value=0.011 Score=58.66 Aligned_cols=39 Identities=8% Similarity=0.006 Sum_probs=33.7
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccC
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Pt 128 (955)
.++=.++.+|.|||||.-.+-++......+.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 456678899999999988777888877888999999988
No 119
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.58 E-value=0.027 Score=60.75 Aligned_cols=36 Identities=6% Similarity=0.015 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEc
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTS 126 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~ 126 (955)
+.++++.||||+|||..+........ ..+.+++|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 68999999999999998765544555 5677776654
No 120
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.50 E-value=0.059 Score=53.95 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=25.2
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
..+++.+|+|+|||..+..........+..++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 78999999999999987544444444566666553
No 121
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.47 E-value=0.029 Score=62.39 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=25.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhc--------CCeEEEEc
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRD--------KQRVIYTS 126 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~--------~~~vl~l~ 126 (955)
+..+++.+|+|+|||..+.......... +..++++.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 4579999999999999875443333222 56677765
No 122
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.44 E-value=0.019 Score=59.01 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=26.6
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
.+..+++.||+|+|||..+..........+..++++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 46789999999999999875544444344556666543
No 123
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.40 E-value=0.061 Score=58.74 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHH----hcCC---cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHH-hcCCeeE
Q 002183 77 LDPFQRVSVACL----ERNE---SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQ-EFKDVGL 148 (955)
Q Consensus 77 l~~~Q~~ai~~l----~~g~---~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~-~~~~vg~ 148 (955)
+.|||.+++..+ .+|+ .+++.||+|+|||..+...............--+....-+ +.+.. ..+++..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c----~~~~~~~~~d~~~ 78 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGC----QLMQAGTHPDYYT 78 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHH----HHHHHTCCTTEEE
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHH----HHHhcCCCCCEEE
Confidence 357888887665 3443 4899999999999887544333322221100001111111 22222 1224444
Q ss_pred EecccccCCCCCEEEEeHHHHHHHHhcC--CccCCccceEEEEccccCCCCCChHHHHHHHHhC---CCcceEEEeccc
Q 002183 149 MTGDVTLSPNASCLVMTTEILRGMLYRG--SEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFL---PPAIKMVFLSAT 222 (955)
Q Consensus 149 ~tGd~~~~~~~~IlV~Tpe~L~~~l~~~--~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l---~~~~~~v~lSAT 222 (955)
+.++. ....+ +.+.++.....- ........++||||||.|.. ...+.++..+ +++..+|+.|..
T Consensus 79 ~~~~~---~~~~~---~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~----~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 79 LAPEK---GKNTL---GVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD----AAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp ECCCT---TCSSB---CHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH----HHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred Eeccc---cCCCC---CHHHHHHHHHHHhhccccCCcEEEEECchhhcCH----HHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 43321 01122 223344333221 12245688999999999973 2334444444 334555555543
No 124
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.21 E-value=0.032 Score=56.71 Aligned_cols=41 Identities=10% Similarity=0.029 Sum_probs=35.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKA 130 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Ptka 130 (955)
.|.-.++.++.|||||..++-.+..+...|.+++++.|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 45667789999999999988888888888999999999874
No 125
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.14 E-value=0.05 Score=53.17 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i 112 (955)
..++++.+|+|+|||..+....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 5689999999999998775443
No 126
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.01 E-value=0.27 Score=47.85 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCchHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~ 111 (955)
+..+++.||+|+|||..+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 467999999999999987543
No 127
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.01 E-value=0.12 Score=57.21 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=56.8
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEc-cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTS-PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~-PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (955)
.+++.||+|+|||..+.. +...+.. +..++++. +...-..+.++.+...++.. .+. .. .+.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~-l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~---~~~----~~-----~~~~~~ 112 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK-LWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIP---FPR----RG-----LSRDEF 112 (389)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCC---CCS----SC-----CCHHHH
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCcc---CCC----CC-----CCHHHH
Confidence 799999999999998754 3344433 45667765 22222334444444433210 000 00 022222
Q ss_pred HHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCC-------CcceEEEecccc
Q 002183 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP-------PAIKMVFLSATM 223 (955)
Q Consensus 170 ~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~-------~~~~~v~lSAT~ 223 (955)
...+.........-.+||+||+|.+. ......+...+. .++.+|+.|..+
T Consensus 113 ~~~l~~~l~~~~~~~vlilDE~~~l~----~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 113 LALLVEHLRERDLYMFLVLDDAFNLA----PDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp HHHHHHHHHHTTCCEEEEEETGGGSC----HHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred HHHHHHHHhhcCCeEEEEEECccccc----hHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 22221100011234589999999992 334444444442 255566655443
No 128
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.01 E-value=0.071 Score=60.62 Aligned_cols=78 Identities=15% Similarity=0.297 Sum_probs=45.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (955)
+..+++.||+|+|||..+.......... +.+++|+.... +.++....+... ..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~-~~~~~~~~~~~~----------------------~~~~ 186 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK-FLNDLVDSMKEG----------------------KLNE 186 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH-HHHHHHHHHHTT----------------------CHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH-HHHHHHHHHHcc----------------------cHHH
Confidence 3589999999999999775433333232 66677765432 333333333210 1122
Q ss_pred HHHHHhcCCccCCccceEEEEccccCCCC
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDR 197 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~d~ 197 (955)
+...+. .+.+++++||+|.+.+.
T Consensus 187 ~~~~~~------~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 187 FREKYR------KKVDILLIDDVQFLIGK 209 (440)
T ss_dssp HHHHHT------TTCSEEEEECGGGGSSC
T ss_pred HHHHhc------CCCCEEEEeCcccccCC
Confidence 222111 15679999999999863
No 129
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.00 E-value=0.29 Score=54.98 Aligned_cols=131 Identities=11% Similarity=0.053 Sum_probs=69.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (955)
..+++++|+|+|||..+.-........|.+++++. +.+.-+.+....+....+ +........ ..|..+
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~g-v~~~~~~~~---------~dp~~i 167 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIG-VQVYGEPNN---------QNPIEI 167 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTT-CCEECCTTC---------SCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcC-Cceeecccc---------CCHHHH
Confidence 35778999999999876544444445677776655 445444444444444322 222222111 123322
Q ss_pred -HHHHhcCCccCCccceEEEEccccCC---CCCChHHHHHHHHhCCCcceEEEeccccC-ChHHHHHHHh
Q 002183 170 -RGMLYRGSEVLKEVAWVIFDEIHYMK---DRERGVVWEESIIFLPPAIKMVFLSATMS-NATQFAEWIC 234 (955)
Q Consensus 170 -~~~l~~~~~~l~~l~~vIiDEaH~l~---d~~rg~~~~~ii~~l~~~~~~v~lSAT~~-n~~~~~~~l~ 234 (955)
...+.... ..+.++||+|++-++. +...-..+..+...+.++.-++.++|+.. +..+.++.+.
T Consensus 168 ~~~al~~a~--~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 168 AKKGVDIFV--KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp HHHHHHHTT--TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHH--hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 22332211 2478999999998654 22222233344445555666777888764 3334444443
No 130
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.89 E-value=0.047 Score=54.71 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=25.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHH-----hcCCeEEEEccChhh
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAF-----RDKQRVIYTSPLKAL 131 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l-----~~~~~vl~l~PtkaL 131 (955)
-.++.|+.|||||+.+..-+.... ..|.+.+|++..-.|
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL 50 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGL 50 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTB
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCc
Confidence 468999999999997755433332 334366766665444
No 131
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.80 E-value=0.013 Score=55.44 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.3
Q ss_pred hcCCcEEEEcCCCCchHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~ 110 (955)
..+.++++.+|+|+|||.++..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHH
Confidence 5778999999999999998754
No 132
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.73 E-value=0.043 Score=55.15 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=32.4
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChh
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKA 130 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Ptka 130 (955)
..|.-.++.+|.|||||...+-.+......+.+++++.|.+.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 346667889999999998776666667777899999999753
No 133
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.48 E-value=0.12 Score=51.25 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=69.0
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHH--
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTE-- 167 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe-- 167 (955)
....++|..++|.|||.+++-..+.++.+|.+|+++.=.+.-...-...+-+.++ +-+...+.... ..+++
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~-v~~~~~g~gf~------~~~~~~~ 99 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHG-VEFQVMATGFT------WETQNRE 99 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGT-CEEEECCTTCC------CCGGGHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCC-cEEEEcccccc------cCCCCcH
Confidence 3457999999999999999988899999999999997665310001111222222 33322222111 11211
Q ss_pred ----HHHHHHhcCCccC--CccceEEEEccccCCCCCC--hHHHHHHHHhCCCcceEEEeccccC
Q 002183 168 ----ILRGMLYRGSEVL--KEVAWVIFDEIHYMKDRER--GVVWEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 168 ----~L~~~l~~~~~~l--~~l~~vIiDEaH~l~d~~r--g~~~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
.....+......+ .++++||+||+-+....+. ...+.+.+...|...-+|+.+--.|
T Consensus 100 ~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 100 ADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 1111111111123 5789999999955321111 2223345555566666666555444
No 134
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.31 E-value=0.15 Score=53.73 Aligned_cols=19 Identities=42% Similarity=0.473 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
..+++.+|+|+|||.++..
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 5799999999999998754
No 135
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.19 E-value=0.32 Score=48.67 Aligned_cols=20 Identities=35% Similarity=0.316 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~ 111 (955)
.++++.||+|+|||..+...
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l 58 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIAL 58 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 36999999999999876543
No 136
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.18 E-value=0.037 Score=52.21 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=19.2
Q ss_pred HHhcCCcEEEEcCCCCchHHHHH
Q 002183 87 CLERNESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 87 ~l~~g~~vlv~apTGsGKTl~~~ 109 (955)
....+.++++.+|+|+|||.++-
T Consensus 23 ~~~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHHHG
T ss_pred HhCCCCcEEEECCCCccHHHHHH
Confidence 34667899999999999998763
No 137
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.12 E-value=0.074 Score=58.87 Aligned_cols=36 Identities=22% Similarity=0.471 Sum_probs=24.7
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEc
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTS 126 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~ 126 (955)
+..+++.||+|+|||..+....-..... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 5689999999999999875433322222 55666665
No 138
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.06 E-value=0.12 Score=54.27 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCCchHHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~ 111 (955)
..+.++++.+|||+|||.++...
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i 49 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRL 49 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHHH
Confidence 45788999999999999877443
No 139
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.85 E-value=0.19 Score=58.35 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=24.2
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccC
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Pt 128 (955)
+.+++.||+|+|||.++... +..+ +..++.+...
T Consensus 78 ~~lLL~GppGtGKTtla~~l-a~~l--~~~~i~in~s 111 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLV-AQEL--GYDILEQNAS 111 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHH-HHHT--TCEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHHc--CCCEEEEeCC
Confidence 68999999999999987543 3332 5666666543
No 140
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.68 E-value=0.61 Score=49.68 Aligned_cols=125 Identities=14% Similarity=0.162 Sum_probs=66.9
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHH-HHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTE 167 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~-~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe 167 (955)
++.+++.+|+|+|||..+...... ....|.+++++. |.+.-+.+....+.+..+ +.... ..++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~g-l~~~~------------~~~~~ 171 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQ-APLEV------------CYTKE 171 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTT-CCCCB------------CSSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcC-CCeEe------------cCCHH
Confidence 567889999999999865543333 333576776654 444444444444433322 10000 01355
Q ss_pred HHHHHHhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCC---CcceEEEeccccCChHHHHHHHhh
Q 002183 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLP---PAIKMVFLSATMSNATQFAEWICH 235 (955)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~---~~~~~v~lSAT~~n~~~~~~~l~~ 235 (955)
.+...+.. +.+.++||+|.+-.... ....+.++...+. +...++.++||. +..++.++...
T Consensus 172 ~l~~al~~----~~~~dlvIiDT~G~~~~--~~~~~~el~~~l~~~~~~~~~lVl~at~-~~~~~~~~~~~ 235 (296)
T 2px0_A 172 EFQQAKEL----FSEYDHVFVDTAGRNFK--DPQYIDELKETIPFESSIQSFLVLSATA-KYEDMKHIVKR 235 (296)
T ss_dssp HHHHHHHH----GGGSSEEEEECCCCCTT--SHHHHHHHHHHSCCCTTEEEEEEEETTB-CHHHHHHHTTT
T ss_pred HHHHHHHH----hcCCCEEEEeCCCCChh--hHHHHHHHHHHHhhcCCCeEEEEEECCC-CHHHHHHHHHH
Confidence 55544442 36789999996654432 1233444444443 333467777774 34455555543
No 141
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.54 E-value=0.11 Score=55.85 Aligned_cols=19 Identities=26% Similarity=0.260 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
.++++.+|+|+|||.++..
T Consensus 68 ~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4799999999999998754
No 142
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.34 E-value=0.18 Score=57.25 Aligned_cols=107 Identities=19% Similarity=0.078 Sum_probs=59.5
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHHHHHhcCCe---eEEecccccC--------
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELHQEFKDV---GLMTGDVTLS-------- 156 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~~~~~~v---g~~tGd~~~~-------- 156 (955)
..|.-++++|++|+|||..+.-.+..... .+.+|+|++.-- =..|...++......+ .+..|..+..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~-~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a 276 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM-PAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDV 276 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS-CHHHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHH
Confidence 45677899999999999877655555444 477899987642 2345555543222111 1112221100
Q ss_pred ----CCCCEEEE-----eHHHHHHHHhcCCccCCccceEEEEccccCCCC
Q 002183 157 ----PNASCLVM-----TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR 197 (955)
Q Consensus 157 ----~~~~IlV~-----Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~ 197 (955)
...++.+. |++.+...+.+-.. -..+++||||..+.+...
T Consensus 277 ~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~~ 325 (444)
T 2q6t_A 277 ASRLSEAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSGP 325 (444)
T ss_dssp HHHHHTSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBCC
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCCC
Confidence 02345553 45555543322110 125789999999988753
No 143
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.02 E-value=0.12 Score=56.10 Aligned_cols=41 Identities=7% Similarity=-0.016 Sum_probs=23.0
Q ss_pred CCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEec
Q 002183 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLS 220 (955)
Q Consensus 180 l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lS 220 (955)
..+..++|+||+|.+........+...+...+.++++|+.|
T Consensus 103 ~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 103 DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 34678999999999862111122222333334566666644
No 144
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.99 E-value=0.26 Score=50.08 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=33.2
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
..|+.+++.+|+|+|||..+...+......+.+++|+.... ...+....+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~ 71 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE-SRDSIIRQAK 71 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS-CHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc-CHHHHHHHHH
Confidence 45778999999999999876554444445567788776432 2344444443
No 145
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.86 E-value=0.38 Score=51.70 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.8
Q ss_pred cEEEEcCCCCchHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~ 110 (955)
++++.||+|+|||..+..
T Consensus 48 ~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 699999999999987654
No 146
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.85 E-value=0.39 Score=51.79 Aligned_cols=107 Identities=15% Similarity=0.141 Sum_probs=61.5
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCee---EEecccccCC-------
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTLSP------- 157 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg---~~tGd~~~~~------- 157 (955)
+..|.-++++|++|+|||..+.-.+.....++.+++|++-- .=..|+..++......+. +..|...++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~ 143 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLS 143 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHH
Confidence 35677899999999999987766555666667889998854 334555555544322221 1111100100
Q ss_pred -------CCCEEEE-----eHHHHHHHHhcCCccCCccc--eEEEEccccCCC
Q 002183 158 -------NASCLVM-----TTEILRGMLYRGSEVLKEVA--WVIFDEIHYMKD 196 (955)
Q Consensus 158 -------~~~IlV~-----Tpe~L~~~l~~~~~~l~~l~--~vIiDEaH~l~d 196 (955)
..++.+. |++.+...+.+-.. -..++ +||||-.+.+..
T Consensus 144 ~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~-~~~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 144 MAIGEISNSNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp HHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHH-TSSSCCEEEEEECGGGSBC
T ss_pred HHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCeEEEEeCchhcCC
Confidence 2345443 45555544432110 12577 999999998863
No 147
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.75 E-value=0.17 Score=54.27 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.1
Q ss_pred hcCCcEEEEcCCCCchHHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~ 111 (955)
..+.++++.+|||+|||.++-..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i 45 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARAL 45 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHH
Confidence 45678999999999999987543
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.66 E-value=0.71 Score=46.72 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=21.7
Q ss_pred HHHHHHHH-HHhcCC---cEEEEcCCCCchHHHHHHH
Q 002183 79 PFQRVSVA-CLERNE---SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 79 ~~Q~~ai~-~l~~g~---~vlv~apTGsGKTl~~~~~ 111 (955)
.-..+.+. .+..++ .+++.||+|+|||..+...
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 29 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 33444443 344444 6899999999999876443
No 149
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.61 E-value=0.071 Score=57.98 Aligned_cols=107 Identities=19% Similarity=0.195 Sum_probs=60.2
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCee---EEeccccc----------
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGDVTL---------- 155 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg---~~tGd~~~---------- 155 (955)
..|.-++++|++|+|||..+.-.+......+.+|+|++.-- =..|+..++......+. +.+|..+.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm-s~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~ 122 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM-SAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCF 122 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS-CHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 45677999999999999877665555556788999987642 23444444432211111 01111100
Q ss_pred --CCCCCEEEE-----eHHHHHHHHhcCCccCCccceEEEEccccCCC
Q 002183 156 --SPNASCLVM-----TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 156 --~~~~~IlV~-----Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
-.+.++.|. |++.+++.+.+-......+++||||-.+.|..
T Consensus 123 ~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 123 DHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCT
T ss_pred HHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcC
Confidence 002334442 44555544432111112689999999998864
No 150
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.59 E-value=0.21 Score=50.32 Aligned_cols=38 Identities=18% Similarity=0.100 Sum_probs=28.6
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccCh
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Ptk 129 (955)
..|.-+++.+|+|+|||..+...+. ..+.+++|+.-..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 3567889999999999987655444 4577888887543
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.50 E-value=0.26 Score=56.16 Aligned_cols=107 Identities=21% Similarity=0.205 Sum_probs=57.8
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEEccChhhHHHHHHHHH-HhcC-Cee-EEeccccc---------
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYTSPLKALSNQKYRELH-QEFK-DVG-LMTGDVTL--------- 155 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l~PtkaLa~Q~~~~l~-~~~~-~vg-~~tGd~~~--------- 155 (955)
..|.-+++.|++|+|||..+.-.+..... .|.+|+|++.--. ..|...++. ..++ +.. +..|....
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a 279 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMA 279 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 45678999999999999877655554443 5678999875432 234444432 1221 100 01111100
Q ss_pred ---CCCCCEEEE-----eHHHHHHHHhcCCccCCccceEEEEccccCCCC
Q 002183 156 ---SPNASCLVM-----TTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDR 197 (955)
Q Consensus 156 ---~~~~~IlV~-----Tpe~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~ 197 (955)
-...++.+. |.+.+...+.+-.. -.++++||||+.+.+...
T Consensus 280 ~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~-~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 280 MGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQ-ESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHHSSCEEEECCTTCCHHHHHHHHHHHHT-TTCCCEEEEECGGGSCCS
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEccHHHhccC
Confidence 002234442 44545443322110 125789999999998753
No 152
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.30 E-value=0.22 Score=55.64 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=23.4
Q ss_pred CCcEEE--EcCCCCchHHHHHHHHHHHHhc------CCeEEEEc
Q 002183 91 NESVLV--SAHTSAGKTAVAEYAIAMAFRD------KQRVIYTS 126 (955)
Q Consensus 91 g~~vlv--~apTGsGKTl~~~~~i~~~l~~------~~~vl~l~ 126 (955)
+..+++ .||+|+|||..+.......-.. +..++++.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 456888 8999999999875543332221 44566665
No 153
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.28 E-value=0.25 Score=54.14 Aligned_cols=90 Identities=21% Similarity=0.161 Sum_probs=55.4
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEE---eH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVM---TT 166 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~---Tp 166 (955)
.|.-+++.+++|+|||..+.-.+......+.+++|+..-..+..+..+.+ .-+. .++.+. |.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~---g~~~------------~~l~i~~~~~~ 126 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKL---GVDI------------DNLLCSQPDTG 126 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHT---TCCG------------GGCEEECCSSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHc---CCCh------------hheeeeCCCCH
Confidence 46789999999999999987777777777889999987554443322221 1110 012222 34
Q ss_pred HHHHHHHhcCCccCCccceEEEEccccCC
Q 002183 167 EILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 167 e~L~~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
+.+...+..-. .-..+++||||.+..+.
T Consensus 127 e~~~~~~~~l~-~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 127 EQALEICDALA-RSGAVDVIVVDSVAALT 154 (356)
T ss_dssp HHHHHHHHHHH-HHTCCSEEEEECGGGCC
T ss_pred HHHHHHHHHHH-hccCCCEEEEcCHHHhc
Confidence 44444332100 01357899999998775
No 154
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.17 E-value=0.8 Score=51.47 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=66.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHH-H
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTE-I 168 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe-~ 168 (955)
..+++++++|+|||.++.-.+.....+|.+++++. |.++-+.++.+.+.+..+ +.+...+.. ..|. .
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~g-vpv~~~~~~---------~dp~~i 170 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYH-IEVFGNPQE---------KDAIKL 170 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGT-CEEECCTTC---------CCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcC-CcEEecCCC---------CCHHHH
Confidence 35788999999999976544444445677887766 667766666565555433 222221111 1232 2
Q ss_pred HHHHHhcCCccCCccceEEEEccccCCCCCChHHHH---HHHHhCCCcceEEEeccccC
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWE---ESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~---~ii~~l~~~~~~v~lSAT~~ 224 (955)
+.+.+.... -...++||+|.+=++... ..... .+.....++.-++.++||..
T Consensus 171 ~~~al~~a~--~~~~DvVIIDTaGrl~~d--~~lm~el~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 171 AKEGVDYFK--SKGVDIIIVDTAGRHKED--KALIEEMKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp HHHHHHHHH--HTTCSEEEEECCCCSSCC--HHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred HHHHHHHHH--hCCCCEEEEECCCcccch--HHHHHHHHHHHHhhcCceEEEEEeCCCc
Confidence 223322211 124789999999655422 22222 23333445666788888875
No 155
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.13 E-value=0.51 Score=50.53 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=23.5
Q ss_pred CCccceEEEEccccCCCCCChHHHHHHHHh---CCCcceEEEec
Q 002183 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIF---LPPAIKMVFLS 220 (955)
Q Consensus 180 l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~---l~~~~~~v~lS 220 (955)
..+.+++|+||||.|.. ...+.++.. -|++..+|+.+
T Consensus 80 ~~~~kvviIdead~lt~----~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQ----QAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCH----HHHHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCH----HHHHHHHHHHhCCCCCeEEEEEE
Confidence 45789999999999973 233333333 34455555554
No 156
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.99 E-value=0.4 Score=52.11 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~ 111 (955)
.++++.+|+|+|||.++...
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 58999999999999987543
No 157
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.89 E-value=0.28 Score=51.80 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.+..+++.+|+|+|||..+-.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHH
Confidence 457899999999999987643
No 158
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.84 E-value=0.31 Score=53.30 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=25.9
Q ss_pred CCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccC
Q 002183 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 180 l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
..+.+++|+||+|.+. ......+..++...+++..+|+.|-.+.
T Consensus 132 ~~~~~vlilDE~~~L~-~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANSLT-KDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTSSC-HHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccccC-HHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 3467799999999954 2222233444445566666766665543
No 159
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.80 E-value=0.32 Score=55.15 Aligned_cols=106 Identities=15% Similarity=0.125 Sum_probs=60.2
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCee---EEecc--cccC-------
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVG---LMTGD--VTLS------- 156 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg---~~tGd--~~~~------- 156 (955)
..|.-++++|++|+|||..++-.+.....+|.+|+|++--- =..|+..++......+. +.+|. .+..
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm-s~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~~~~~l~~ 273 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSM 273 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS-CTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcccCCCCHHHHHHHHH
Confidence 45677999999999999887766666666688999987542 22333344333221111 11222 1100
Q ss_pred -----CCCCEEE-----EeHHHHHHHHhcCCccCCccc--eEEEEccccCCC
Q 002183 157 -----PNASCLV-----MTTEILRGMLYRGSEVLKEVA--WVIFDEIHYMKD 196 (955)
Q Consensus 157 -----~~~~IlV-----~Tpe~L~~~l~~~~~~l~~l~--~vIiDEaH~l~d 196 (955)
...++.| .|++.++..+.+-.. -..++ +||||=.+.+..
T Consensus 274 a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~-~~~~~~~lIVID~Lq~~~~ 324 (444)
T 3bgw_A 274 AIGEISNSNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEP 324 (444)
T ss_dssp HHHHHHTSCEEEECCSSCBHHHHHHHHHHHHH-HSCSSCEEEEEECSTTSBC
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEecHHhccC
Confidence 0234544 255656544432111 12578 999999998864
No 160
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.78 E-value=0.82 Score=47.33 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
...+++.+|+|+|||..+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45799999999999987754
No 161
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.77 E-value=0.48 Score=51.22 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
...+++.+|+|+|||..+-... .. .+...+++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia-~~--~~~~~~~v~ 83 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVA-TE--ANSTFFSVS 83 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHH-HH--HTCEEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHH-HH--HCCCEEEEc
Confidence 3579999999999999875432 22 244555543
No 162
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.36 E-value=0.52 Score=51.37 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=18.5
Q ss_pred HHhcC--CcEEEEcCCCCchHHHHHH
Q 002183 87 CLERN--ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 87 ~l~~g--~~vlv~apTGsGKTl~~~~ 110 (955)
.+..+ .++++.||+|+|||..+..
T Consensus 52 ~l~~~~~~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 52 TLKSANLPHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp HTTCTTCCCEEEECSTTSSHHHHHHH
T ss_pred HHhcCCCCEEEEECCCCCCHHHHHHH
Confidence 34444 5699999999999987643
No 163
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.36 E-value=0.23 Score=54.12 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=18.0
Q ss_pred HhcCCc--EEEEcCCCCchHHHHHH
Q 002183 88 LERNES--VLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 88 l~~g~~--vlv~apTGsGKTl~~~~ 110 (955)
+..|+- +++.||+|+|||..+..
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHH
T ss_pred HhcCCCceEEEECCCCCCHHHHHHH
Confidence 455543 89999999999987754
No 164
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.24 E-value=0.33 Score=53.14 Aligned_cols=42 Identities=29% Similarity=0.249 Sum_probs=34.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKAL 131 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaL 131 (955)
.|+-+++.+|+|+|||..+...+......+.+++|+.--..+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~ 101 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHAL 101 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence 467899999999999998887777777788899998765444
No 165
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.19 E-value=0.33 Score=53.40 Aligned_cols=89 Identities=17% Similarity=0.139 Sum_probs=55.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-CeeEEecccccCCCCCEEEE---e
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLVM---T 165 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV~---T 165 (955)
.|.-+++.+++|+|||..+.-.+......+.+|+|+..-..+.... ...++ +. .+++|. |
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~----a~~~g~d~------------~~l~i~~~~~ 136 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVY----ARALGVNT------------DELLVSQPDN 136 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH----HHHTTCCG------------GGCEEECCSS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHH----HHHcCCCH------------HHceeecCCc
Confidence 4577899999999999988776666667788899998765443322 11222 11 012221 4
Q ss_pred HHHHHHHHhcCCccCCccceEEEEccccCC
Q 002183 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
.+.+...+..-.. -..+++||||.+..+.
T Consensus 137 ~e~~l~~l~~l~~-~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 137 GEQALEIMELLVR-SGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHHHHHHHHHHHT-TTCCSEEEEECTTTCC
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEeChHHhc
Confidence 4555444321100 1357899999999886
No 166
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.96 E-value=0.49 Score=52.66 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
..++++.+|+|+|||.++... ... .+..++++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~ai-a~~--~~~~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAV-AAE--SNATFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHH-HHH--TTCEEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHH-HHh--hcCcEEEeeH
Confidence 478999999999999987543 222 3555555554
No 167
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.94 E-value=0.71 Score=50.67 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=19.6
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhc
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD 118 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~ 118 (955)
+.+++.||+|+|||.++.. +...+..
T Consensus 71 ~~vLl~GppGtGKT~la~~-la~~l~~ 96 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMG-MAQALGP 96 (368)
T ss_dssp CEEEEEESTTSSHHHHHHH-HHHHHCS
T ss_pred CEEEEECCCCCCHHHHHHH-HHHHhcc
Confidence 5799999999999998754 4444443
No 168
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.86 E-value=0.5 Score=48.34 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=29.0
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHh------cCCeEEEEccCh
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLK 129 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~------~~~~vl~l~Ptk 129 (955)
..|.-+.+.+|+|+|||..+...+...+. .+..++|+.-..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 35678999999999999877655443322 256788886544
No 169
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=90.22 E-value=1 Score=48.09 Aligned_cols=115 Identities=8% Similarity=-0.029 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEe
Q 002183 318 FKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAV 397 (955)
Q Consensus 318 ~~l~~~l~~~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~ 397 (955)
..++..+.+ .+.+++||+...+..+-+-..+...++. +.-
T Consensus 115 ~~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~~~~---------------------------------------y~R 154 (328)
T 3hgt_A 115 RDLINLVQE-YETETAIVCRPGRTMDLLEALLLGNKVH---------------------------------------IKR 154 (328)
T ss_dssp HHHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTSSCE---------------------------------------EEE
T ss_pred HHHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcCCCc---------------------------------------eEe
Confidence 344555543 4579999999999999888888765443 222
Q ss_pred ecCCCCHHHHHHHHHHHhcCCccEEEEcccccccCC-----CCCcEEEEecceeccCCCCcccCHH-HHHHHhccCCCC-
Q 002183 398 HHSGLLPVIKELVELLFQEGLVKALFATETFAMGLN-----MPAKTVVFTAVKKWDGDSHRYIGSG-EYIQMSGRAGRR- 470 (955)
Q Consensus 398 ~H~~l~~~~R~~v~~~F~~g~i~VLvaT~~la~Gid-----ip~~~vVi~~~~~~d~~~~~~~s~~-ey~Q~~GRaGR~- 470 (955)
+.|.... .+.. -.++...+.+.|...+-|+| ....++|| -||. .++|. +.+|.+-|+.|.
T Consensus 155 lDG~~~~-~~~k----~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI----~~Ds----dwNp~~d~iQa~~r~~R~~ 221 (328)
T 3hgt_A 155 YDGHSIK-SAAA----ANDFSCTVHLFSSEGINFTKYPIKSKARFDMLI----CLDT----TVDTSQKDIQYLLQYKRER 221 (328)
T ss_dssp SSSCCC------------CCSEEEEEEESSCCCTTTSCCCCCSCCSEEE----ECST----TCCTTSHHHHHHHCCC---
T ss_pred CCCCchh-hhhh----cccCCceEEEEECCCCCCcCcccccCCCCCEEE----EECC----CCCCCChHHHHHHHHhhhc
Confidence 3343222 1111 12455566555776677787 56677888 5666 44443 468888888887
Q ss_pred -CCCCceEEEEEeCCc
Q 002183 471 -GKDDRGICIIMVDEQ 485 (955)
Q Consensus 471 -G~~~~g~~ii~~~~~ 485 (955)
|+.....+|.+....
T Consensus 222 ~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 222 KGLERYAPIVRLVAIN 237 (328)
T ss_dssp ------CCEEEEEETT
T ss_pred cCCCCcceEEEEeCCC
Confidence 444566777777555
No 170
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.16 E-value=1.3 Score=46.48 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=29.8
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHhc-----------CCeEEEEccChh
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRD-----------KQRVIYTSPLKA 130 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-----------~~~vl~l~Ptka 130 (955)
+..|+-+++.+|+|+|||..+...+.. +.. +.+++|++---.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~-~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ-IAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH-HHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH-HhcCCCcCCCccCCCccEEEEECCCC
Confidence 457888999999999999877654443 333 357888765443
No 171
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.07 E-value=0.45 Score=52.02 Aligned_cols=45 Identities=29% Similarity=0.229 Sum_probs=35.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ 134 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q 134 (955)
.|.-+++.+|+|+|||..+...+......+.+++|+.+-..+...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV 104 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH
Confidence 356789999999999998776666666678889999877655443
No 172
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.91 E-value=0.31 Score=55.32 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
.++++.+|+|+|||..+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ 69 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEV 69 (447)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 3699999999999998754
No 173
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.70 E-value=0.54 Score=49.95 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
+..+++.||+|+|||..+-.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 57899999999999997754
No 174
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.58 E-value=1 Score=48.53 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCchHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (955)
+.+++.+|+|+|||..+-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 679999999999999764
No 175
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.56 E-value=0.84 Score=48.84 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=16.1
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
++++.||+|+|||..+...
T Consensus 44 ~~ll~G~~G~GKt~la~~l 62 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCL 62 (323)
T ss_dssp CEEEECSTTSSHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHH
Confidence 5999999999999876543
No 176
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.41 E-value=1.4 Score=48.31 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
...+++.+|+|+|||..+-.. +..+ +...+.+
T Consensus 84 ~~~iLL~GppGtGKT~la~al-a~~~--~~~~~~v 115 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAV-ATEA--NSTFFSV 115 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHH-HHHH--TCEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHH-HHHh--CCCEEEe
Confidence 357999999999999987543 3332 4444444
No 177
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.76 E-value=0.66 Score=49.90 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCchHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~ 111 (955)
...+++.+|+|+|||..+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 368999999999999877543
No 178
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.68 E-value=1 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=17.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAF 116 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l 116 (955)
.+++.||+|+|||..+.. +...+
T Consensus 40 ~~ll~G~~G~GKT~la~~-la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARL-LAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHHHH-HHHHh
Confidence 479999999999988743 33444
No 179
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.53 E-value=0.63 Score=61.59 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=60.6
Q ss_pred HHHHhc------CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCC
Q 002183 85 VACLER------NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPN 158 (955)
Q Consensus 85 i~~l~~------g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~ 158 (955)
++.++. ++++++.+|+|+|||..+...+..+..+|.+++|+..--++.... .+.+.-++.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~----------- 1480 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID----------- 1480 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTT-----------
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCch-----------
Confidence 666554 789999999999999999887888888899999998876554444 222221111
Q ss_pred CCEEEEe---HHHHHHHHhcCCccCCccceEEEEccccCC
Q 002183 159 ASCLVMT---TEILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 159 ~~IlV~T---pe~L~~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
++.|.. .|.+...+.+... -..+++|||||+.-+.
T Consensus 1481 -~l~v~~~~~~E~~l~~~~~lvr-~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1481 -NLLCSQPDTGEQALEICDALAR-SGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp -TCEEECCSSHHHHHHHHHHHHH-HTCCSEEEESCGGGCC
T ss_pred -hceeecCChHHHHHHHHHHHHh-cCCCCEEEEcChhHhc
Confidence 122322 2444443332100 1357899999997443
No 180
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.21 E-value=0.47 Score=48.67 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=36.9
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELH 140 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~ 140 (955)
..|.-+++.||+|+|||..+...+......+.+++|+.-.. -..+..+.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHH
Confidence 46788999999999999987665555666788899887543 3455555544
No 181
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=87.71 E-value=0.88 Score=44.93 Aligned_cols=44 Identities=11% Similarity=-0.021 Sum_probs=25.5
Q ss_pred CCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccC
Q 002183 180 LKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 180 l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
..+.+++|+||+..+.+.... .++.+...+.....+|+-|+|++
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~-~~~~l~~~l~~~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQL-FIQAVRQTLSTPGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSH-HHHHHHHHHHCSSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHH-HHHHHHHHHhCCCcEEEEEeecC
Confidence 567789999998777433222 23433333433334555577775
No 182
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=87.18 E-value=2.7 Score=50.74 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhhcCCcc-CCC---ccchhhhhhhcccCCchhHHHHHHhhCCCC---CCCHHHHHHHhhccc-cccCCc
Q 002183 760 RDELKNRSRVLKKLGHID-ADG---VVQLKGRAACLIDTGDELLVTELMFNGTFN---DLDHHQVAALASCFI-PVDKSS 831 (955)
Q Consensus 760 ~~e~~~~~~VL~~lgyid-~~~---~vt~KGrvA~eI~s~~eLlltEll~~g~f~---~l~p~eiaAllS~~v-~~~~~~ 831 (955)
.+.+..-++.|.++|+|+ .++ .+|.-|+++++.+- + -..+.++...+=. ..+..++-.++|..- |+
T Consensus 453 ~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~---- 526 (720)
T 2zj8_A 453 EEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYI-D-PYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDIT---- 526 (720)
T ss_dssp HHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTC-C-HHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCC----
T ss_pred HHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcC-C-HHHHHHHHHHHHhhccCCCHHHHHHHhccCcccc----
Confidence 346788889999999998 544 68999999999987 3 3344444433211 144556666655432 11
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHc--CCCCCc--hh--hhhccCCccHHHHHHHHhCCCCHHHHHhhcCCCcch
Q 002183 832 EQINLRMELAKPLQQLQESARKIAEIQNEC--KLEVNV--DE--YVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGS 905 (955)
Q Consensus 832 ~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~--~l~~~~--~~--~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ 905 (955)
.....+.=. ..+.+.. .+...+. .+++.. ++ |....-.+...-+.++|.++.+..+|++...+..||
T Consensus 527 -~i~~r~~e~---~~l~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gd 599 (720)
T 2zj8_A 527 -PFNYSKREF---ERLEEEY---YEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGD 599 (720)
T ss_dssp -CCCCCHHHH---HHHHHHH---HHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHH
T ss_pred -ccccCHHHH---HHHHHHH---HhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHh
Confidence 111222111 1112111 1111111 122211 11 111001233556889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhcCCe
Q 002183 906 IIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGI 947 (955)
Q Consensus 906 ivR~~rRl~ellrq~~~aa~~iG~~~L~~k~~~a~~~ikRdi 947 (955)
+...+....-+++-+...+...|...+...+..-+..|.-++
T Consensus 600 l~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~gv 641 (720)
T 2zj8_A 600 IYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGI 641 (720)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999998777666665555554443
No 183
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=87.14 E-value=2.5 Score=50.92 Aligned_cols=155 Identities=15% Similarity=0.073 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhhcCCccCC--CccchhhhhhhcccCCchhHHHHHHhhCCCCC-CCHHHHHHHhhccc-cccCCccccc
Q 002183 760 RDELKNRSRVLKKLGHIDAD--GVVQLKGRAACLIDTGDELLVTELMFNGTFND-LDHHQVAALASCFI-PVDKSSEQIN 835 (955)
Q Consensus 760 ~~e~~~~~~VL~~lgyid~~--~~vt~KGrvA~eI~s~~eLlltEll~~g~f~~-l~p~eiaAllS~~v-~~~~~~~~~~ 835 (955)
.+.+..-++.|.++|+|+.+ ..+|.-||+++..+- +--.++++..++=.. .+..++-.++|... |+ . ..
T Consensus 452 ~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~----~-i~ 524 (702)
T 2p6r_A 452 SYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYI--DPLTGFIFHDVLSRMELSDIGALHLICRTPDME----R-LT 524 (702)
T ss_dssp HHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTC--CHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSC----C-CC
T ss_pred HHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhC--CHHHHHHHHHHhhcccCCHHHHHHHhhCCcccc----c-CC
Confidence 34678889999999999976 679999999999987 445566666665332 45556655554321 21 1 11
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHcCC-CCC---chhhhhccCCccHHHHHHHHhCCCCHHHHHhhcCCCcchHHHHHH
Q 002183 836 LRMELAKPLQQLQESARKIAEIQNECKL-EVN---VDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSAR 911 (955)
Q Consensus 836 ~~~~l~~~~~~l~~~~~~i~~~~~~~~l-~~~---~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~r 911 (955)
..+. + ..+.+... +. .+++ +++ ..+|..-.-.+...-+.++|.+|.++.+|++..++..||+...+.
T Consensus 525 ~r~~--e--~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~ 595 (702)
T 2p6r_A 525 VRKT--D--SWVEEEAF---RL--RKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVE 595 (702)
T ss_dssp CCTT--T--HHHHHHHH---HH--GGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCc--h--HHHHHHHH---hc--cccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHH
Confidence 1111 0 11111111 11 1222 222 101110001234567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCH
Q 002183 912 RLDEFLNQLRAAAQAVGEV 930 (955)
Q Consensus 912 Rl~ellrq~~~aa~~iG~~ 930 (955)
...-+++-+...+...|..
T Consensus 596 ~a~~l~~a~~~i~~~~g~~ 614 (702)
T 2p6r_A 596 TAEWLSNAMNRIAEEVGNT 614 (702)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCHH
Confidence 9999999988888888865
No 184
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.12 E-value=7.9 Score=41.55 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 78 DPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 78 ~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
+.-+.+.+.. .....++|.||.|+|||......... +. ..++|+.
T Consensus 18 R~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~-~~--~~~~~~~ 62 (357)
T 2fna_A 18 REKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINE-LN--LPYIYLD 62 (357)
T ss_dssp CHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHH-HT--CCEEEEE
T ss_pred hHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHh-cC--CCEEEEE
Confidence 4555555555 44468999999999999876543332 22 3356653
No 185
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=86.52 E-value=0.95 Score=52.23 Aligned_cols=50 Identities=8% Similarity=0.022 Sum_probs=35.2
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEEccChhhHHHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSPLKALSNQKYREL 139 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l~PtkaLa~Q~~~~l 139 (955)
..|.-+++.|++|+|||..++-.+.....+ |.+|+|++---. ..|...++
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHH
Confidence 456789999999999998876655555554 778999875322 34555444
No 186
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=85.99 E-value=3.4 Score=43.81 Aligned_cols=19 Identities=37% Similarity=0.342 Sum_probs=16.1
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
++++.||+|+|||..+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l 58 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIAL 58 (319)
T ss_dssp CEEEESSSSSSHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHH
Confidence 5999999999999876443
No 187
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=85.88 E-value=2.5 Score=48.15 Aligned_cols=53 Identities=17% Similarity=0.101 Sum_probs=42.5
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCC
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKD 145 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~ 145 (955)
.+....+.+-||||||++..-.+. ..+..+||++|....|.|.+.+++.++++
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~---~~~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAE---RHAGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHH---HSSSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHHHHHHH---HhCCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 456789999999999986433221 23667999999999999999999998873
No 188
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.72 E-value=0.74 Score=52.02 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=35.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSN 133 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~ 133 (955)
...+++|.|+||||||......+.+.+..+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 35689999999999999865455666778889999999988764
No 189
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=84.95 E-value=3.3 Score=43.95 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=47.0
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTE 167 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe 167 (955)
.++.+.+++++|+|||..+..........+.+++++- +.+..+..+...+.+.. ++.++.++.. ..|.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~-~l~~~~~~~~---------~~p~ 166 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKV-GVPVLEVMDG---------ESPE 166 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHH-TCCEEECCTT---------CCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccC-CeEEEEcCCC---------CCHH
Confidence 3556778899999999765443332234566666653 33444433333333322 2223322211 1343
Q ss_pred HH-HHHHhcCCccCCccceEEEEccccC
Q 002183 168 IL-RGMLYRGSEVLKEVAWVIFDEIHYM 194 (955)
Q Consensus 168 ~L-~~~l~~~~~~l~~l~~vIiDEaH~l 194 (955)
.+ +..+... ...+.++||+|+.-.+
T Consensus 167 ~l~~~~l~~~--~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 167 SIRRRVEEKA--RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHHHHHHHH--HHHTCCEEEEECCCCS
T ss_pred HHHHHHHHHH--HhCCCCEEEEeCCCCc
Confidence 33 2222211 1246789999999544
No 190
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.66 E-value=1.6 Score=57.15 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=62.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeH---H
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT---E 167 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp---e 167 (955)
|+.+.+.+|+|||||..++-.+..+.++|..++|+.+-.+|.... ++.++-++ .+++|.-| |
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~------------~~l~~~~p~~~e 1495 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDI------------DNLLCSQPDTGE 1495 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCG------------GGCEEECCSSHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCH------------HHeEEeCCCcHH
Confidence 577999999999999999999999999999999999998888775 33322121 12556655 4
Q ss_pred HHH----HHHhcCCccCCccceEEEEccccCCC
Q 002183 168 ILR----GMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 168 ~L~----~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
..+ .++.. ..+++||+|.+--+..
T Consensus 1496 ~~l~~~~~~~~s-----~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1496 QALEICDALARS-----GAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp HHHHHHHHHHHH-----TCCSEEEESCSTTCCC
T ss_pred HHHHHHHHHHHc-----CCCCEEEEccHHhCCc
Confidence 332 22332 2468999999887654
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=84.23 E-value=1.4 Score=49.89 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
.+.+++.+|+|+|||..+-. ++..+ .+...+.+..
T Consensus 167 ~~~vLL~GppGtGKT~lA~a-ia~~~-~~~~~~~v~~ 201 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKA-VATEA-NNSTFFSISS 201 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHH-HHHHC-CSSEEEEECC
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHc-CCCCEEEEeH
Confidence 36799999999999997743 33332 2444555544
No 192
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=83.93 E-value=1.4 Score=50.34 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
...+++.+|+|+|||+++-.. ... .+...+++.
T Consensus 238 ~~~vLL~GppGtGKT~lArai-a~~--~~~~fv~vn 270 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAV-ANE--TGAFFFLIN 270 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHH-HHH--CSSEEEEEE
T ss_pred CCcEEEECcCCCCHHHHHHHH-HHH--hCCCEEEEE
Confidence 467999999999999987443 222 244555443
No 193
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=83.79 E-value=8.5 Score=40.06 Aligned_cols=136 Identities=17% Similarity=0.191 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhcCCccCCCccchhhhhhhcccCCchhHHHHHHhhCCCCCCCH-HHHHHHhhccccccCCccccccchh
Q 002183 761 DELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH-HQVAALASCFIPVDKSSEQINLRME 839 (955)
Q Consensus 761 ~e~~~~~~VL~~lgyid~~~~vt~KGrvA~eI~s~~eLlltEll~~g~f~~l~p-~eiaAllS~~v~~~~~~~~~~~~~~ 839 (955)
+.+.+=+..|..||.||+++.+|.-||..+++-. |.-+--.+|....|.-+++ --|||+||. ++ ... . +.+
T Consensus 18 ~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl-~P~lakmLl~a~~~~c~~~~l~iaA~Ls~---~~--~f~-~-p~~ 89 (270)
T 3i4u_A 18 ETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPL-EPMLCKMLIMSVHLGCSEEMLTIVSMLSV---QN--VFY-R-PKD 89 (270)
T ss_dssp HHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCS-CHHHHHHHHHHHHTTCHHHHHHHHHHHTS---SC--CBC-C-CGG
T ss_pred HHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCC-CHHHHHHHHHhhhcCCHHHHHHHHHHHCC---Cc--ccc-C-Cch
Confidence 3566778899999999999999999999999986 5544444445445554433 234455543 21 110 1 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhhccCCccHHHHHHHHhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHH
Q 002183 840 LAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQ 919 (955)
Q Consensus 840 l~~~~~~l~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ellrq 919 (955)
-++ .+. +...++..+..|+ ..+..+..+|.+...=.+-|..--+. .|.+++..++-+|
T Consensus 90 ~~~-------~a~-----~~~~~f~~~~sD~------ltlLn~~~~~~~~~~~~~wC~~~fL~----~~~l~~~~~ir~Q 147 (270)
T 3i4u_A 90 KQA-------LAD-----QKKAKFHQTEGDH------LTLLAVYNSWKNNKFSNPWCYENFIQ----ARSLRRAQDIRKQ 147 (270)
T ss_dssp GHH-------HHH-----HHHHTTCBTTBHH------HHHHHHHHHHHHTTTCHHHHHHTTBC----HHHHHHHHHHHHH
T ss_pred hHH-------HHH-----HHHHHccCCCChH------HHHHHHHHHHHHcCchhhHHHHhcCC----HHHHHHHHHHHHH
Confidence 111 011 0111222222222 25666777775432223445444333 3667788888888
Q ss_pred HHHhhhh
Q 002183 920 LRAAAQA 926 (955)
Q Consensus 920 ~~~aa~~ 926 (955)
+....+-
T Consensus 148 L~~~l~~ 154 (270)
T 3i4u_A 148 MLGIMDR 154 (270)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776553
No 194
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=83.63 E-value=1 Score=51.25 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
+.+++.+|+|+|||+.+-.
T Consensus 50 ~gvLL~GppGtGKT~Lara 68 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARA 68 (476)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5699999999999998643
No 195
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.42 E-value=1.4 Score=57.46 Aligned_cols=94 Identities=19% Similarity=0.153 Sum_probs=57.7
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEIL 169 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L 169 (955)
.|..+++.+|+|+|||..+.-.+...+..|.+++|++-.........+.+..-..++-+. .+ .|.+.+
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~------~p------~t~e~l 100 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCS------QP------DTGEQA 100 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEE------CC------SSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeee------cc------CcHHHH
Confidence 468899999999999998887777788888999999866544333222110000011111 11 145555
Q ss_pred HHHHhcCCccCCccceEEEEccccCCC
Q 002183 170 RGMLYRGSEVLKEVAWVIFDEIHYMKD 196 (955)
Q Consensus 170 ~~~l~~~~~~l~~l~~vIiDEaH~l~d 196 (955)
..++..-. ...+.++||||++..+..
T Consensus 101 ~~ll~~L~-~~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 101 LEICDALA-RSGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HHHHHHHH-HHTCCSEEEESCSTTCCC
T ss_pred HHHHHHHH-hccCCCEEEEcchhhhcc
Confidence 44433210 014678999999998763
No 196
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=83.34 E-value=1.5 Score=50.91 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.+..+++.+|+|+|||..+-.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 477899999999999987643
No 197
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=81.51 E-value=1.4 Score=48.89 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=35.0
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKAL 131 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaL 131 (955)
.+.+++|.++||||||...-.-+......+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCH
Confidence 567899999999999988777666666778899999888764
No 198
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=81.50 E-value=1.2 Score=47.51 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=55.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEe---HH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMT---TE 167 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~T---pe 167 (955)
.+++.+|+|+|||..++-.+....+. +.+++|+..-.++.... ++.+.-+. .++++.. .|
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~r---a~~lGvd~------------d~llv~~~~~~E 94 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAY---LRSMGVDP------------ERVIHTPVQSLE 94 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHH---HHHTTCCG------------GGEEEEECSBHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHH---HHHhCCCH------------HHeEEEcCCCHH
Confidence 68899999999999988877777765 78999999887775432 33322111 1344543 34
Q ss_pred HH-HHHHhcC-CccCCccceEEEEccccCC
Q 002183 168 IL-RGMLYRG-SEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 168 ~L-~~~l~~~-~~~l~~l~~vIiDEaH~l~ 195 (955)
.+ ...+..- ...-..+++||+|=+..+.
T Consensus 95 ~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 95 QLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 43 3222110 0011357899999998774
No 199
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=81.28 E-value=1.4 Score=45.18 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=35.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHH-HHhcCCeEEEEccChhhHHHHHHHHHHh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAM-AFRDKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~-~l~~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
.|.-++++|++|+|||..+.-.+.. +...+..++|++-. .-..+..+.+...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHHHHc
Confidence 4678999999999999876654444 34557778888754 2345555555443
No 200
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=80.47 E-value=1.4 Score=50.66 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=30.5
Q ss_pred CCHHHHHHHHH-HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 77 LDPFQRVSVAC-LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 77 l~~~Q~~ai~~-l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
+++.+..-+.. +..|..+++++|||||||... .+++..+....+++.+
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i~~~~giiti 293 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFIPPDAKVVSI 293 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEEE
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhCCCCCCEEEE
Confidence 44555555544 578889999999999999864 3333333334444443
No 201
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=79.86 E-value=2.5 Score=52.24 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=18.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIA 113 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~ 113 (955)
..++++.||+|+|||.++.....
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999997755443
No 202
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=78.50 E-value=2.2 Score=47.73 Aligned_cols=48 Identities=17% Similarity=0.287 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHH--hcCCcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEE
Q 002183 77 LDPFQRVSVACL--ERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYT 125 (955)
Q Consensus 77 l~~~Q~~ai~~l--~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l 125 (955)
+.+-+..++..+ ..+..++|++|||||||... .+++..+.. .+++++.
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELNSSERNILTV 201 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHCCTTSCEEEE
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEEe
Confidence 345566666654 34556889999999999864 334444433 3444443
No 203
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=78.33 E-value=2.1 Score=46.09 Aligned_cols=42 Identities=10% Similarity=0.061 Sum_probs=31.5
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhc------CCeEEEEccChhh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRD------KQRVIYTSPLKAL 131 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~------~~~vl~l~PtkaL 131 (955)
.|.-+++.||+|+|||..+...+...... +.+++|+.--..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~ 153 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTF 153 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCC
Confidence 45778999999999998876655554433 6789999876544
No 204
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=78.20 E-value=3.5 Score=38.29 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=53.0
Q ss_pred CCccHHHHHHHH-hCCCCHHHHHhhcCC-CcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHH
Q 002183 875 VRPFLMDVIYCW-SKGATFAEVIQMTDI-FEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAAS 940 (955)
Q Consensus 875 ~~~~l~~~v~~W-a~G~~f~~i~~~t~~-~EG~ivR~~rRl~ellrq~~~aa~~iG~~~L~~k~~~a~ 940 (955)
|++.+++-+..+ +.|.|+.+||...+| ..-.|=||+.+=.|+..++..| +..+...+.+.+.+..
T Consensus 13 ~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~ef~e~~~~A-r~~~~~~~~~~~~~ia 79 (140)
T 4dyq_A 13 YMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKA-TEARADSIFEEIFEIA 79 (140)
T ss_dssp CCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 788999988888 999999999999999 8999999999999988888876 3334555555555433
No 205
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=78.03 E-value=12 Score=41.77 Aligned_cols=120 Identities=14% Similarity=0.128 Sum_probs=60.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (955)
+..+.+++++|+|||..+..........+.+++++. +.+..+.++...+.... ++.++.++.. ..|..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~-gv~v~~~~~~---------~~p~~ 167 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKV-GVPVLEVMDG---------ESPES 167 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHH-TCCEEECCTT---------CCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccC-CccEEecCCC---------CCHHH
Confidence 345778899999999876544333334566776654 44555544444443322 2333332211 13433
Q ss_pred H-HHHHhcCCccCCccceEEEEccccCCCCCChHHHHHH---HHhCCCcceEEEeccccC
Q 002183 169 L-RGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 169 L-~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~i---i~~l~~~~~~v~lSAT~~ 224 (955)
+ ...+.... -..+++||+|=+-.+... .....++ ...+.++.-++.+.|+..
T Consensus 168 i~~~~l~~~~--~~~~DvVIIDTaG~l~~d--~~l~~el~~i~~~~~pd~vlLVvDa~tg 223 (425)
T 2ffh_A 168 IRRRVEEKAR--LEARDLILVDTAGRLQID--EPLMGELARLKEVLGPDEVLLVLDAMTG 223 (425)
T ss_dssp HHHHHHHHHH--HTTCSEEEEECCCCSSCC--HHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred HHHHHHHHHH--HCCCCEEEEcCCCccccc--HHHHHHHHHhhhccCCceEEEEEeccch
Confidence 3 33332210 146789999977554321 2233332 222334444566666643
No 206
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=77.72 E-value=2.4 Score=41.12 Aligned_cols=58 Identities=14% Similarity=0.054 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHH--hcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccChhhHHH
Q 002183 77 LDPFQRVSVACL--ERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPLKALSNQ 134 (955)
Q Consensus 77 l~~~Q~~ai~~l--~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~PtkaLa~Q 134 (955)
.++-|..|+..+ ....-.+|+++-|++||....-.++..- ..|.+|.+++|+..-...
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMN 95 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHH
Confidence 457799999887 4455678899999999987544433333 468999999999755443
No 207
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=76.99 E-value=1.8 Score=45.01 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=19.0
Q ss_pred HhcCCcEEEEcCCCCchHHHHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~ 110 (955)
+..|+.+++++|||||||...-.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~ 44 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIAS 44 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHH
Confidence 56788899999999999986533
No 208
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=76.86 E-value=4.5 Score=49.11 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=18.4
Q ss_pred cCCcEEEEcCCCCchHHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~ 111 (955)
.+.++++.+|+|+|||.++...
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~l 227 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGL 227 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHH
Confidence 4678999999999999987543
No 209
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=75.58 E-value=2.6 Score=42.99 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=28.7
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEccC
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSPL 128 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~Pt 128 (955)
+..|+-+.+.+|+|||||..+-..+...+ ..+..++|+.-.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 35788899999999999987655443333 556666666543
No 210
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=75.24 E-value=4.6 Score=48.99 Aligned_cols=79 Identities=11% Similarity=0.030 Sum_probs=61.9
Q ss_pred CCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHH
Q 002183 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (955)
Q Consensus 329 ~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~ 408 (955)
+.+++|.++++.-+.+.+..+.+..- .+...++.+||+++...|.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~-----------------------------------~~gi~v~~l~G~~~~~~r~ 461 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFS-----------------------------------KFNIHVALLIGATTPSEKE 461 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHT-----------------------------------CSSCCEEECCSSSCHHHHH
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhh-----------------------------------hcCceEEEEeCCCCHHHHH
Confidence 46899999999999888877754210 0112378999999999999
Q ss_pred HHHHHHhcCCccEEEEccc-ccccCCCCCcEEEEe
Q 002183 409 LVELLFQEGLVKALFATET-FAMGLNMPAKTVVFT 442 (955)
Q Consensus 409 ~v~~~F~~g~i~VLvaT~~-la~Gidip~~~vVi~ 442 (955)
.+...+.+|..+|+|+|.. +...+++..+.+||.
T Consensus 462 ~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 462 KIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp HHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred HHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 9999999999999999954 455688888887663
No 211
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=74.10 E-value=2.8 Score=45.50 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=31.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHh------cCCeEEEEccChhh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLKAL 131 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~------~~~~vl~l~PtkaL 131 (955)
.|.-+++.+|+|+|||..+...+..... .+.+++|+.-...+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~ 168 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTF 168 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCC
Confidence 4567899999999999987665555433 36789999876543
No 212
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=73.16 E-value=3.5 Score=43.58 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=28.3
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEEcc
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTSP 127 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l~P 127 (955)
+..|+-+++.||+|+|||..+...+...... |.+++|+..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3568889999999999998765444333333 557877754
No 213
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=72.93 E-value=3.6 Score=41.56 Aligned_cols=129 Identities=15% Similarity=0.160 Sum_probs=62.8
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEE-EccChhhHHHHHHHHHHhcCC--eeEEecccccCCCCCEEEEeHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIY-TSPLKALSNQKYRELHQEFKD--VGLMTGDVTLSPNASCLVMTTEIL 169 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~-l~PtkaLa~Q~~~~l~~~~~~--vg~~tGd~~~~~~~~IlV~Tpe~L 169 (955)
++++.++.|+|||..+.-........|.++++ .+-+..-+..+. .+.. ... .+... . .+..+--+....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~a-l~~g-l~~~~~~~~~----~-~~~~~~e~~l~~~ 80 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEA-LLNG-LPQQPLLRTE----Y-RGMTLEEMDLDAL 80 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHH-HHTT-SCBCCCEEEE----E-TTEEEEECCHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHH-HhcC-ccccCcceee----c-CCcccccccHHHH
Confidence 58899999999999876655555567766643 332221111110 0111 111 11110 0 0111111233332
Q ss_pred HHHHhcCCccCCccceEEEEccccCC--CCCChHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcC
Q 002183 170 RGMLYRGSEVLKEVAWVIFDEIHYMK--DRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHK 238 (955)
Q Consensus 170 ~~~l~~~~~~l~~l~~vIiDEaH~l~--d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~ 238 (955)
+. ...+++|+||.=+.. .......|..+...++..+-++..+- +...+.+.+.+..+.+
T Consensus 81 ---L~------~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N-lqh~esl~d~v~~itg 141 (228)
T 2r8r_A 81 ---LK------AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN-VQHLESLNDQVRGITG 141 (228)
T ss_dssp ---HH------HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE-GGGBGGGHHHHHHHHS
T ss_pred ---Hh------cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc-ccccccHHHHHHHHcC
Confidence 22 146799999965442 22233456666666776666664433 2223344555555443
No 214
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=72.20 E-value=8.2 Score=42.56 Aligned_cols=86 Identities=17% Similarity=0.266 Sum_probs=46.6
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcC-CeeEEecccccCCCCCEEEEeHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFK-DVGLMTGDVTLSPNASCLVMTTE 167 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~-~vg~~tGd~~~~~~~~IlV~Tpe 167 (955)
..+.++++.+++|+|||.+|-.. .....+...-++.+..-++..+... .++|+ .-|..||.... .++
T Consensus 158 ~~~~~vli~Ge~GtGK~~lAr~i-h~~s~r~~~~fv~v~~~~~~~~~~~--~elfg~~~g~~tga~~~---------~~g 225 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVARLI-HKLSDRSKEPFVALNVASIPRDIFE--AELFGYEKGAFTGAVSS---------KEG 225 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHH-HHHSTTTTSCEEEEETTTSCHHHHH--HHHHCBCTTSSTTCCSC---------BCC
T ss_pred CCCCCeEEecCCCcCHHHHHHHH-HHhcCCCCCCeEEEecCCCCHHHHH--HHhcCCCCCCCCCcccc---------cCC
Confidence 45678999999999999877432 2222222223344444455444322 24565 23334443321 112
Q ss_pred HHHHHHhcCCccCCccceEEEEccccCC
Q 002183 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
.+. ..+=+.+++||++.+.
T Consensus 226 ~~~---------~a~~gtlfldei~~l~ 244 (387)
T 1ny5_A 226 FFE---------LADGGTLFLDEIGELS 244 (387)
T ss_dssp HHH---------HTTTSEEEEESGGGCC
T ss_pred cee---------eCCCcEEEEcChhhCC
Confidence 221 1123689999999986
No 215
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=72.00 E-value=6.3 Score=41.92 Aligned_cols=91 Identities=11% Similarity=0.143 Sum_probs=45.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (955)
++-+++.+|+|+|||..+..........+.+++++. +.+.-+.++...+.+.. .+..+.... . ..|..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~-gl~~~~~~s--~-------~~~~~ 173 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERV-GATVISHSE--G-------ADPAA 173 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHH-TCEEECCST--T-------CCHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHc-CCcEEecCC--c-------cCHHH
Confidence 445778999999999765443332224566665543 33433333333333322 222222111 0 12332
Q ss_pred H-HHHHhcCCccCCccceEEEEcccc
Q 002183 169 L-RGMLYRGSEVLKEVAWVIFDEIHY 193 (955)
Q Consensus 169 L-~~~l~~~~~~l~~l~~vIiDEaH~ 193 (955)
+ ...+... ...+.++||+|++-.
T Consensus 174 v~~~al~~a--~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 174 VAFDAVAHA--LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHH--HHTTCSEEEEEECCC
T ss_pred HHHHHHHHH--HhcCCCEEEEECCCc
Confidence 2 1222111 134678999999964
No 216
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=71.54 E-value=3.2 Score=45.68 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=24.5
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHh-c-CCeEEEE
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFR-D-KQRVIYT 125 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~-~-~~~vl~l 125 (955)
+..|..+++++|||||||...-. ++..+. . .++++++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~-l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIAS-MIDYINQTKSYHIITI 171 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHH-HHHHHHHHSCCEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHH-HHhhcCcCCCcEEEEe
Confidence 35677899999999999986533 223332 2 4566554
No 217
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=71.03 E-value=3.9 Score=40.87 Aligned_cols=33 Identities=24% Similarity=0.168 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHH
Q 002183 78 DPFQRVSVACLERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 78 ~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~ 110 (955)
+.-|..++..+..|+-+.+.+|.|||||...-+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~ 41 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMA 41 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHHH
Confidence 345778899999999999999999999986544
No 218
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=70.60 E-value=12 Score=36.33 Aligned_cols=81 Identities=19% Similarity=0.078 Sum_probs=50.2
Q ss_pred CCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccC-----------CCCCEEEEeHHHH
Q 002183 101 SAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLS-----------PNASCLVMTTEIL 169 (955)
Q Consensus 101 GsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~-----------~~~~IlV~Tpe~L 169 (955)
.+.|.. +++-++.....+.++||.++++.-+...++.+....-.+..++|+.+.. ...+|+|+|.
T Consensus 29 ~~~K~~-~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~--- 104 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA--- 104 (185)
T ss_dssp GGGHHH-HHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC---
T ss_pred cHHHHH-HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC---
Confidence 456643 3344444434578899999999999999999988766888999987532 3568888883
Q ss_pred HHHHhcCCccCCccceEEE
Q 002183 170 RGMLYRGSEVLKEVAWVIF 188 (955)
Q Consensus 170 ~~~l~~~~~~l~~l~~vIi 188 (955)
.+..|- .+.++++||.
T Consensus 105 --~~~~Gl-di~~~~~VI~ 120 (185)
T 2jgn_A 105 --VAARGL-DISNVKHVIN 120 (185)
T ss_dssp ---------CCCSBSEEEE
T ss_pred --hhhcCC-CcccCCEEEE
Confidence 222332 3567777775
No 219
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=70.32 E-value=3.8 Score=44.70 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=23.3
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhc--CCeEEEE
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRD--KQRVIYT 125 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~--~~~vl~l 125 (955)
..+..+++++|||||||...- +++..+.. +.+++.+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~-~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLA-AMLDYLNNTKYHHILTI 158 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHH-HHHHHHHHHCCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHH-HHHhcccCCCCcEEEEc
Confidence 456689999999999998653 33333332 4555443
No 220
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=69.78 E-value=4.5 Score=39.27 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=24.4
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
.+..+++.++.|||||.++-......-..+.++.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 456788999999999998765433332345556555
No 221
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=69.73 E-value=2.8 Score=40.69 Aligned_cols=21 Identities=5% Similarity=0.232 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.|+-+++++|+|||||...-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 567789999999999997544
No 222
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=69.71 E-value=2.2 Score=42.15 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=18.7
Q ss_pred hcCCcEEEEcCCCCchHHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~ 111 (955)
..++.+++.+++|||||.++-..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHH
Confidence 46778999999999999987543
No 223
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=69.30 E-value=4.1 Score=43.20 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
..+++.+|+|+|||.++-.........+..++++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 4799999999999998754333332333444444
No 224
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=69.14 E-value=13 Score=41.03 Aligned_cols=79 Identities=23% Similarity=0.083 Sum_probs=59.6
Q ss_pred cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHH
Q 002183 327 RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVI 406 (955)
Q Consensus 327 ~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~ 406 (955)
....++||.++++.-+.+.+..+..... ....++.+||+.+..+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~------------------------------------~~~~v~~~~g~~~~~~ 105 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD------------------------------------EKVKIFGFYSSMKKEE 105 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC------------------------------------SSCCEEECCTTSCHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc------------------------------------CCceEEEEECCCChhh
Confidence 3557899999999999999988876211 0123789999999999
Q ss_pred HHHHHHHHhcCCccEEEEccccc----ccCCCCCcEEEE
Q 002183 407 KELVELLFQEGLVKALFATETFA----MGLNMPAKTVVF 441 (955)
Q Consensus 407 R~~v~~~F~~g~i~VLvaT~~la----~Gidip~~~vVi 441 (955)
|......+.+|..+|+|+|.-.- .-++...+.+||
T Consensus 106 ~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iV 144 (414)
T 3oiy_A 106 KEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVF 144 (414)
T ss_dssp HHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEE
T ss_pred HHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEE
Confidence 88888899999999999996432 124555666665
No 225
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=68.81 E-value=8 Score=49.45 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=47.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHH
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILR 170 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~ 170 (955)
-+|.|..|||||.+...-|...+.. +.++++++|... .-+..+++....+.- ....+-|+|...|.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~~~l~~~----------~~~~~~V~TFhsla 72 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELAKTPDMG----------GMIRAQVFSFSRLA 72 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHTCCSSCS----------EESSEEEECHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHHHhhhhc----------ceeeeEEecHHHHH
Confidence 3789999999999988877777654 468999999873 444444444433211 12468899988876
Q ss_pred HHH
Q 002183 171 GML 173 (955)
Q Consensus 171 ~~l 173 (955)
..+
T Consensus 73 ~~i 75 (1166)
T 3u4q_B 73 WRV 75 (1166)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 226
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=68.35 E-value=23 Score=33.35 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=50.4
Q ss_pred cCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceE
Q 002183 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (955)
Q Consensus 118 ~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (955)
.+.++||.++++.-+...+..+......+..++|+.+. +....|+|+|. .+..|- .+.++++|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G~-d~~~~~~V 102 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARGI-DVQQVSLV 102 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTTTC-CCCSCSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhcCC-CcccCCEE
Confidence 46789999999999999999998876688899998652 34678999993 344443 36678888
Q ss_pred EE
Q 002183 187 IF 188 (955)
Q Consensus 187 Ii 188 (955)
|.
T Consensus 103 i~ 104 (165)
T 1fuk_A 103 IN 104 (165)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 227
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=67.91 E-value=3.1 Score=41.44 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=17.8
Q ss_pred hcCCcEEEEcCCCCchHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~ 110 (955)
..|.-+++++|+|||||.++-.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~ 27 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREA 27 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHH
Confidence 3567788999999999997643
No 228
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=67.80 E-value=3.3 Score=45.36 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.8
Q ss_pred HhcCCcEEEEcCCCCchHHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~ 108 (955)
+..|+.+++++|||||||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 478999999999999999864
No 229
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=67.29 E-value=37 Score=31.75 Aligned_cols=65 Identities=22% Similarity=0.162 Sum_probs=50.5
Q ss_pred cCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceE
Q 002183 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (955)
Q Consensus 118 ~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (955)
.+.++||.++++.-+...++.+....-.+..++|+.+. +...+|+|+|. .+..|- .+.++++|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~Gl-d~~~~~~V 107 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAARGI-DIENISLV 107 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTTTC-CCSCCSEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcCC-chhcCCEE
Confidence 56789999999999999999999887789999998642 34678999992 344443 36678888
Q ss_pred EE
Q 002183 187 IF 188 (955)
Q Consensus 187 Ii 188 (955)
|.
T Consensus 108 i~ 109 (163)
T 2hjv_A 108 IN 109 (163)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 230
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=67.29 E-value=2.6 Score=40.50 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
+..+++++++|||||.++-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45688999999999998644
No 231
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=66.87 E-value=2.7 Score=40.74 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCchHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~ 111 (955)
+..+++.+++|||||.++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 567899999999999987543
No 232
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=66.61 E-value=2.8 Score=45.10 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchHHHH
Q 002183 91 NESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~ 108 (955)
+.-+++++|||||||.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346889999999999865
No 233
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=66.26 E-value=33 Score=41.46 Aligned_cols=61 Identities=21% Similarity=0.247 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhcCCccCCCccchhhhhhhcccCCchhHHHHHHhhCCCCCCCH-HHHHHHhh
Q 002183 761 DELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDH-HQVAALAS 822 (955)
Q Consensus 761 ~e~~~~~~VL~~lgyid~~~~vt~KGrvA~eI~s~~eLlltEll~~g~f~~l~p-~eiaAllS 822 (955)
..+.+-++.|..+|.||.++.+|.-||.++++.. +.-+--.++....|.-+++ -.|||+||
T Consensus 489 ~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl-~p~~~~~l~~~~~~~c~~~~l~i~a~ls 550 (773)
T 2xau_A 489 ETMMRALEELNYLACLDDEGNLTPLGRLASQFPL-DPMLAVMLIGSFEFQCSQEILTIVAMLS 550 (773)
T ss_dssp HHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSS-CHHHHHHHHHGGGGTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCcccCCCcChhhhhhccccC-CHHHHHHHHhhcccCchhHHHHHHHhcc
Confidence 4677788999999999999999999999999986 5544444555545554333 34455555
No 234
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=66.20 E-value=3.4 Score=40.23 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=25.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHH
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQK 135 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~ 135 (955)
++|.+++|||||.-++-... . +.+++|++.-...-.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~---~-~~~~~yiaT~~~~d~e~ 39 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG---D-APQVLYIATSQILDDEM 39 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC---S-CSSEEEEECCCC-----
T ss_pred EEEECCCCCcHHHHHHHHHh---c-CCCeEEEecCCCCCHHH
Confidence 68999999999987664321 2 66789998866543333
No 235
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=66.13 E-value=8.7 Score=42.11 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=21.4
Q ss_pred EEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 96 VSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 96 v~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
.++.-|.|||.++.-........|.+|+++=
T Consensus 149 ~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 149 TSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp ECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3568899999987654433334588888874
No 236
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=66.08 E-value=5.7 Score=39.73 Aligned_cols=42 Identities=21% Similarity=0.149 Sum_probs=28.1
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHh------cCCeEEEEccChh
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLKA 130 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~------~~~~vl~l~Ptka 130 (955)
..|+-+.+.+|+|||||..+...+..... .+..++|+.....
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 46778999999999999876543332222 2456788776543
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=66.03 E-value=3.4 Score=40.79 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.|+-+.+++|+|||||...-+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~ 23 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKK 23 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 577899999999999987544
No 238
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=65.83 E-value=6.7 Score=37.70 Aligned_cols=34 Identities=29% Similarity=0.209 Sum_probs=21.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
-+.+++++|||||......+...-.+|.++-++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4678999999999876543333224565655544
No 239
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=65.82 E-value=2.7 Score=44.74 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchHHHH
Q 002183 92 ESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~ 108 (955)
.-++|+||||||||.++
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34778999999999875
No 240
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=65.63 E-value=5.5 Score=42.71 Aligned_cols=94 Identities=12% Similarity=0.147 Sum_probs=47.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE-ccC-hhhHHHHHHHHHHh--cCCeeEE-ecccccCCCCCEEEEe
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT-SPL-KALSNQKYRELHQE--FKDVGLM-TGDVTLSPNASCLVMT 165 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l-~Pt-kaLa~Q~~~~l~~~--~~~vg~~-tGd~~~~~~~~IlV~T 165 (955)
++.+.+.+++|+|||..+..........+.+++++ ..+ +.-+.+....+.+. ..+++++ .+....++
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p-------- 176 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADP-------- 176 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCH--------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCH--------
Confidence 34577899999999976543332223456666665 333 33332222333220 2256666 33322111
Q ss_pred HHHHHHHHhcCCccCCccceEEEEccccC
Q 002183 166 TEILRGMLYRGSEVLKEVAWVIFDEIHYM 194 (955)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vIiDEaH~l 194 (955)
...+...+... ...++++||||=+=.+
T Consensus 177 ~~~~~~~l~~~--~~~~yD~VIIDTpg~l 203 (320)
T 1zu4_A 177 ASVVFDAIKKA--KEQNYDLLLIDTAGRL 203 (320)
T ss_dssp HHHHHHHHHHH--HHTTCSEEEEECCCCG
T ss_pred HHHHHHHHHHH--HhcCCCEEEEcCCCcc
Confidence 11222222111 1246789999977544
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=65.54 E-value=6.2 Score=41.96 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=23.0
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
.|+.+.+.+|+|||||...-......-..++++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 456788899999999986544332222345555554
No 242
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=65.19 E-value=2.8 Score=44.50 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchHHHH
Q 002183 93 SVLVSAHTSAGKTAVA 108 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~ 108 (955)
-++|++|||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4678999999999875
No 243
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=65.13 E-value=3.6 Score=47.07 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCcEEEEcCCCCchHHHHHH
Q 002183 82 RVSVACLERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 82 ~~ai~~l~~g~~vlv~apTGsGKTl~~~~ 110 (955)
..++.++..+.++++.||+|+|||..+-.
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHH
Confidence 34445568889999999999999997643
No 244
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=64.82 E-value=3.1 Score=44.88 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.5
Q ss_pred HhcCCcEEEEcCCCCchHHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~ 108 (955)
+..|+.+.+++|||||||...
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 478999999999999999853
No 245
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=64.70 E-value=6.4 Score=38.71 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHH
Q 002183 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~ 111 (955)
.+..+..++ ....|..+.+.+|.|||||.++-..
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~~~L 45 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLACAL 45 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHHHHH
Confidence 444454332 2356778889999999999986543
No 246
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=64.61 E-value=2.9 Score=39.73 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.9
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
-++++|++|||||.++-..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999987654
No 247
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=64.48 E-value=6.3 Score=41.56 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
+.++++.+|+|+|||.++-.
T Consensus 50 ~~~vll~G~~GtGKT~la~~ 69 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARR 69 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 67899999999999988754
No 248
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=64.43 E-value=3.2 Score=44.60 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=20.7
Q ss_pred HHHhcCCcEEEEcCCCCchHHHHHH
Q 002183 86 ACLERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 86 ~~l~~g~~vlv~apTGsGKTl~~~~ 110 (955)
..+..+.++++.+|+|+|||..+..
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHHH
Confidence 4456788999999999999987643
No 249
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=64.18 E-value=3.5 Score=40.81 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~ 108 (955)
.|.-+++.+|||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3566899999999999754
No 250
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.17 E-value=13 Score=41.43 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (955)
.+.+|+.||+|+|||+.+-
T Consensus 206 prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCEEEEESCTTTTHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3569999999999999764
No 251
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=63.79 E-value=2.8 Score=40.79 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=18.6
Q ss_pred HhcCCcEEEEcCCCCchHHHHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~ 110 (955)
+..|..+++.+|+|||||..+-.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~ 28 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHH
Confidence 35677899999999999997543
No 252
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=63.65 E-value=5.5 Score=43.48 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.+.++++.+|||+|||.++-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 457899999999999998744
No 253
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=63.27 E-value=7.2 Score=43.20 Aligned_cols=52 Identities=8% Similarity=0.093 Sum_probs=32.5
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHh------cCCeEEEEccChhhHHHHHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFR------DKQRVIYTSPLKALSNQKYRELHQ 141 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~------~~~~vl~l~PtkaLa~Q~~~~l~~ 141 (955)
.|.-+.+.+|+|+|||..+...+...+. .+.+++|+.-...+.....+.+.+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~ 234 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQ 234 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHH
Confidence 4678999999999999877643333332 356788887654333333333333
No 254
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=63.20 E-value=4.1 Score=40.06 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=18.1
Q ss_pred hcCCcEEEEcCCCCchHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~ 110 (955)
..|+-+.+.||+|||||...-+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHH
Confidence 4677888999999999997543
No 255
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=63.14 E-value=6.6 Score=41.71 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=24.5
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE-ccCh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT-SPLK 129 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l-~Ptk 129 (955)
.|+-+.+.+|+|||||...-......-..++++.+. .++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 455678999999999986543222222345566554 3443
No 256
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.11 E-value=6.5 Score=43.98 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (955)
.+.+|+.||+|+|||+.+-
T Consensus 215 prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHH
Confidence 4679999999999999764
No 257
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=63.04 E-value=3.1 Score=42.97 Aligned_cols=17 Identities=35% Similarity=0.344 Sum_probs=14.4
Q ss_pred cEEEEcCCCCchHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (955)
-+++++|||||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36889999999999764
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=62.96 E-value=4.2 Score=40.02 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.3
Q ss_pred hcCCcEEEEcCCCCchHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~ 110 (955)
..|.-+.+.||+|||||..+-+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 4677889999999999987644
No 259
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.79 E-value=6.9 Score=43.22 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
.+.+|+.+|+|+|||+.+-...... +...+.+..
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~ 215 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSG 215 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEh
Confidence 4789999999999999764332222 444444443
No 260
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=62.78 E-value=5.6 Score=41.99 Aligned_cols=32 Identities=16% Similarity=0.021 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
..+++.+|+|+|||..+... +..+ +..++++.
T Consensus 37 ~~lLl~GppGtGKT~la~ai-A~~l--~~~~i~v~ 68 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELV-FRKM--GINPIMMS 68 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHH-HHHH--TCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHH-HHHh--CCCEEEEe
Confidence 46889999999999987543 3333 44555554
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=62.74 E-value=4.6 Score=39.92 Aligned_cols=21 Identities=5% Similarity=0.360 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCchHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~ 109 (955)
..|+-++++||+|+|||...-
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 357788999999999998654
No 262
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=62.67 E-value=7.6 Score=39.83 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
...+++.+|+|+|||..+-.
T Consensus 45 ~~~vll~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKA 64 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 45799999999999987643
No 263
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=62.51 E-value=6.3 Score=42.16 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=33.7
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHH-H-----------hcC----CeEEEEccChhh-HHHHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMA-F-----------RDK----QRVIYTSPLKAL-SNQKYRELH 140 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~-l-----------~~~----~~vl~l~PtkaL-a~Q~~~~l~ 140 (955)
.|.-+++.+++|+|||..+.-.+... + ..| .+++|++--..+ ..+..+.+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~ 164 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE 164 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999998776555443 2 123 689998866554 444444443
No 264
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=62.50 E-value=6.1 Score=52.46 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=39.0
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKY 136 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~ 136 (955)
..++++++.+|+|+|||..+...+..+.++|.+++|++= -++.++.+
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT-TSCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEc-cccHHHHH
Confidence 367899999999999999999888999999999999864 44555554
No 265
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=62.37 E-value=6.2 Score=44.64 Aligned_cols=33 Identities=33% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEE
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIY 124 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~ 124 (955)
++++++.+|+|+|||..+- ++...+..+...+.
T Consensus 63 ~~~iLl~GppGtGKT~la~-ala~~l~~~~~~~~ 95 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL-AIAQELGSKVPFCP 95 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH-HHHHHHCTTSCEEE
T ss_pred CCeEEEECCCcCCHHHHHH-HHHHHhCCCceEEE
Confidence 3589999999999999874 34444433333333
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=62.09 E-value=4 Score=38.93 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
+..+++.+|.|||||.++-.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56789999999999997644
No 267
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=62.08 E-value=6.2 Score=40.84 Aligned_cols=52 Identities=12% Similarity=0.001 Sum_probs=36.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQE 142 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~ 142 (955)
.|..+++.+.+|+|||+.+..-+...+.+|.+++|++-. +=..+..+.++.+
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEe-CCHHHHHHHHHHc
Confidence 456788887888888866666667778889999998753 3344555555544
No 268
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=61.83 E-value=23 Score=44.96 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=62.4
Q ss_pred CCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHH
Q 002183 328 KFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIK 407 (955)
Q Consensus 328 ~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R 407 (955)
.+.+++|.++++.-+.+.+..+.+..-. ....++.+|+..+...+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-----------------------------------~~i~v~~l~~~~~~~~~ 695 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-----------------------------------WPVRIEMISRFRSAKEQ 695 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-----------------------------------TTCCEEEESTTSCHHHH
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-----------------------------------CCCeEEEEeCCCCHHHH
Confidence 4568999999999888888777541100 11237889999999999
Q ss_pred HHHHHHHhcCCccEEEEc-ccccccCCCCCcEEEEe
Q 002183 408 ELVELLFQEGLVKALFAT-ETFAMGLNMPAKTVVFT 442 (955)
Q Consensus 408 ~~v~~~F~~g~i~VLvaT-~~la~Gidip~~~vVi~ 442 (955)
..+...+.+|..+|+|+| ..+...+++.+..+||.
T Consensus 696 ~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 696 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred HHHHHHHhcCCCCEEEECHHHHhCCccccccceEEE
Confidence 999999999999999999 55666788888887663
No 269
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=61.77 E-value=14 Score=35.23 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=50.0
Q ss_pred cCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceE
Q 002183 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (955)
Q Consensus 118 ~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (955)
.+.++||.++++.-+...+..+......+..++|+.+. +...+|+|+|. .+..| ..+..+++|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~G-id~~~~~~V 106 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCARG-IDVKQVTIV 106 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCTT-TCCTTEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhcC-CCcccCCEE
Confidence 35789999999999999999998877689999998652 34678999983 33333 346778888
Q ss_pred EE
Q 002183 187 IF 188 (955)
Q Consensus 187 Ii 188 (955)
|.
T Consensus 107 i~ 108 (175)
T 2rb4_A 107 VN 108 (175)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 270
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.75 E-value=7.1 Score=43.71 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
.+.+|+.+|+|+|||+.+-.
T Consensus 215 prGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 37899999999999997643
No 271
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=61.69 E-value=5.5 Score=39.35 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=19.0
Q ss_pred HhcCCcEEEEcCCCCchHHHHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~ 110 (955)
+..|.-+++++|+|||||.++-.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHH
Confidence 45678899999999999997644
No 272
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=61.53 E-value=51 Score=32.45 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=51.3
Q ss_pred hcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccce
Q 002183 117 RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAW 185 (955)
Q Consensus 117 ~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~ 185 (955)
..+.++||.+|++.-+...++.+......+..++|+.+. +...+|+|+| +.+.+| ..+.++++
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~G-idi~~v~~ 102 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAARG-LDIPQVDL 102 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTCS-SSCCCBSE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----ChhhcC-CCCccCcE
Confidence 357799999999999999999998887789999998753 3467899999 334444 34677888
Q ss_pred EEE
Q 002183 186 VIF 188 (955)
Q Consensus 186 vIi 188 (955)
||.
T Consensus 103 Vi~ 105 (212)
T 3eaq_A 103 VVH 105 (212)
T ss_dssp EEE
T ss_pred EEE
Confidence 773
No 273
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=61.44 E-value=4.4 Score=39.32 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~ 111 (955)
.+..+++++++|||||.++-..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4567999999999999987543
No 274
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=61.36 E-value=6.8 Score=41.47 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.++.+++.+|+|+|||..+-.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHH
Confidence 457799999999999998753
No 275
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=61.27 E-value=7.8 Score=38.17 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
+.-+.+.+++|||||..+-...-..-..+..++++
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 45578899999999997654322221234445443
No 276
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=61.26 E-value=13 Score=41.72 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=49.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhc-CCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (955)
..+++++++|+|||.++.-........ |.+|+++. |.+..+.++...+.... ++.++.++.. .+|..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~-~l~v~~~~~~---------~dp~~ 170 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQV-GVDFFPSDVG---------QKPVD 170 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHH-TCEECCCCSS---------SCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccC-CeeEEeCCCC---------CCHHH
Confidence 357778999999998765444434445 77877765 55655555444333322 2323322211 13443
Q ss_pred H-HHHHhcCCccCCccceEEEEccccC
Q 002183 169 L-RGMLYRGSEVLKEVAWVIFDEIHYM 194 (955)
Q Consensus 169 L-~~~l~~~~~~l~~l~~vIiDEaH~l 194 (955)
+ ...+.... -.++++||+|=+=++
T Consensus 171 i~~~~l~~~~--~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 171 IVNAALKEAK--LKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHHHHHHH--HTTCSEEEEECCCCC
T ss_pred HHHHHHHHHH--hCCCCEEEEECCCcc
Confidence 3 33332211 136789999987544
No 277
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=61.12 E-value=4.3 Score=39.13 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=18.0
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.+..+++.+++|||||.++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 467899999999999998754
No 278
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=60.90 E-value=2.5 Score=45.27 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=24.5
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
..+..+++.+|+|+|||..+...+.. .+.+++|+.-
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 34566899999999999877654433 3455555543
No 279
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=60.39 E-value=6.1 Score=39.29 Aligned_cols=41 Identities=10% Similarity=0.197 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHhcC----CcEEEEcCCCCchHHHHHHHHHHHH
Q 002183 74 SFELDPFQRVSVACLERN----ESVLVSAHTSAGKTAVAEYAIAMAF 116 (955)
Q Consensus 74 ~f~l~~~Q~~ai~~l~~g----~~vlv~apTGsGKTl~~~~~i~~~l 116 (955)
+.++-.+ ..++..+.++ ..+++.+|+|+|||..+ .+++..+
T Consensus 38 ~~~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 38 QIEFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp TCCHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred CcCHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 4445555 4555555444 35899999999999876 4555444
No 280
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=60.07 E-value=8.8 Score=37.02 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=21.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHh-cCCeEEEE
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFR-DKQRVIYT 125 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~-~~~~vl~l 125 (955)
.+++.++.|||||.++.... ..+. .|..+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~-~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK-EILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHhcCceEEEE
Confidence 47899999999999875533 3333 34445555
No 281
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=59.91 E-value=8.2 Score=44.51 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=30.8
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccCh
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLK 129 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Ptk 129 (955)
+..|..+++.+|+|+|||..+...+......|.+++|+++..
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee 319 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE 319 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 356788999999999999876554444444567788887653
No 282
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=59.68 E-value=9.5 Score=37.82 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHhcCCcEEEEcCCCCchHHHHHHHHHHHH--hcCCeEEEEc
Q 002183 77 LDPFQRVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTS 126 (955)
Q Consensus 77 l~~~Q~~ai~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l--~~~~~vl~l~ 126 (955)
.++.++.. ..+..|..+++.+++|||||.++-... ..+ ..|..++++.
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~l~-~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLAVELE-HQLVRDRRVHAYRLD 61 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHHHHHH-HHHHHHHCCCEEEEC
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHHHHHH-HHhccccCCcEEEEC
Confidence 45565555 345677788899999999998765432 222 2354455554
No 283
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=59.48 E-value=5.7 Score=39.85 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=18.1
Q ss_pred HhcCCcEEEEcCCCCchHHHHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~ 110 (955)
+..|+-+.+.+|+|||||...-+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~ 42 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKK 42 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 36788899999999999987543
No 284
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=59.44 E-value=5.6 Score=38.66 Aligned_cols=20 Identities=15% Similarity=0.424 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
++-+.+.+|+|||||.+.-+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~ 20 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 34578999999999987543
No 285
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=59.24 E-value=9.4 Score=36.60 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.|..+++.++.|||||.++-.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~ 24 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMA 24 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 466788999999999997654
No 286
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=58.86 E-value=8.5 Score=41.38 Aligned_cols=124 Identities=10% Similarity=0.070 Sum_probs=61.4
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEE-EccCh-hhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIY-TSPLK-ALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTE 167 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~-l~Ptk-aLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe 167 (955)
.|.-+.+.+|+|+|||...-.........++++++ -.++. .-+.++.+.+....+ +.++.......+ ..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~g-v~~v~q~~~~~p--------~~ 198 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIG-VKVIKHSYGADP--------AA 198 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTT-CEEECCCTTCCH--------HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcC-ceEEeccccCCH--------HH
Confidence 45678899999999998644332222234455544 44543 334444444444322 223332221111 01
Q ss_pred HHHHHHhcCCccCCccceEEEEccccCCCC-CChHHHHHHHHhCCCcceEEEeccccC
Q 002183 168 ILRGMLYRGSEVLKEVAWVIFDEIHYMKDR-ERGVVWEESIIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 168 ~L~~~l~~~~~~l~~l~~vIiDEaH~l~d~-~rg~~~~~ii~~l~~~~~~v~lSAT~~ 224 (955)
...+.+.... ....+++++|.+-..... ..-..+..+...+.++..++.+.||..
T Consensus 199 ~v~e~l~~~~--~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~ 254 (328)
T 3e70_C 199 VAYDAIQHAK--ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG 254 (328)
T ss_dssp HHHHHHHHHH--HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred HHHHHHHHHH--hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH
Confidence 1111111110 124568899998765422 222223334444556677888888775
No 287
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=58.85 E-value=4.2 Score=38.58 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=15.8
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
.+++.|+.|||||.++-..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4788999999999987543
No 288
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=58.84 E-value=20 Score=45.27 Aligned_cols=79 Identities=23% Similarity=0.101 Sum_probs=60.4
Q ss_pred cCCCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHH
Q 002183 327 RKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVI 406 (955)
Q Consensus 327 ~~~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~ 406 (955)
..+.++||.++++.-|.+++..+...+.. .-.++.+|||++..+
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~------------------------------------~i~v~~l~Gg~~~~e 162 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADE------------------------------------KVKIFGFYSSMKKEE 162 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCT------------------------------------TSCEEEECTTCCTTH
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCC------------------------------------CCeEEEEeCCCCHHH
Confidence 35578999999999999999999874411 123889999999989
Q ss_pred HHHHHHHHhcCCccEEEEccccc-c---cCCCCCcEEEE
Q 002183 407 KELVELLFQEGLVKALFATETFA-M---GLNMPAKTVVF 441 (955)
Q Consensus 407 R~~v~~~F~~g~i~VLvaT~~la-~---Gidip~~~vVi 441 (955)
|......+.+|..+|+|+|.-.- . -++...+.+||
T Consensus 163 r~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lV 201 (1104)
T 4ddu_A 163 KEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVF 201 (1104)
T ss_dssp HHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEE
T ss_pred HHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEE
Confidence 88889999999999999996322 1 14455666655
No 289
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=58.42 E-value=6.9 Score=38.29 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchHHHH
Q 002183 92 ESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~ 108 (955)
+-++++||+|+|||.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45899999999999864
No 290
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=58.36 E-value=10 Score=36.72 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=20.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
+++.|+.|||||.++.......-..|..++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 67899999999998765433322335555433
No 291
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=58.29 E-value=4.7 Score=38.99 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCCchHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~ 111 (955)
+..+++.+++|||||.++-..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L 23 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLA 23 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 567899999999999987543
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=58.27 E-value=4.4 Score=38.80 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.0
Q ss_pred cEEEEcCCCCchHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~ 110 (955)
-+++.+++|||||.++-.
T Consensus 4 ~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 478899999999997644
No 293
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=58.26 E-value=6.2 Score=44.23 Aligned_cols=91 Identities=16% Similarity=0.253 Sum_probs=47.2
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecc-cccCCCCCEEEEeHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGD-VTLSPNASCLVMTTEI 168 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd-~~~~~~~~IlV~Tpe~ 168 (955)
..+++++++|+|||..+.-........|.+++++. |.+.-+.++.+.+.... ++.++... ...++ . +.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~-gv~v~~~~~~~~dp-~-------~i 170 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKI-HVPIYGDETRTKSP-V-------DI 170 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHS-SCCEECCSSSCCSS-S-------TT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhcc-CcceEecCCCCCCH-H-------HH
Confidence 36889999999999876544444445577777765 33322222223332221 22222221 11111 0 12
Q ss_pred HHHHHhcCCccCCccceEEEEccccCC
Q 002183 169 LRGMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 169 L~~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
+...+.. +...++||+|.+-++.
T Consensus 171 ~~~~l~~----~~~~D~vIIDT~G~~~ 193 (432)
T 2v3c_C 171 VKEGMEK----FKKADVLIIDTAGRHK 193 (432)
T ss_dssp HHHHHHT----TSSCSEEEEECCCSCS
T ss_pred HHHHHHH----hhCCCEEEEcCCCCcc
Confidence 2233332 2578899999998664
No 294
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=58.12 E-value=8.8 Score=41.80 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE-ccC
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT-SPL 128 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l-~Pt 128 (955)
|.-+.+.+|+|||||...-......-..++++++. .++
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 44578899999999986543222222345566554 344
No 295
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=58.01 E-value=9.7 Score=39.29 Aligned_cols=35 Identities=11% Similarity=0.183 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
+.-++++|++|||||.++-......-..|..++++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 34688999999999998754332221234444433
No 296
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=57.99 E-value=5.8 Score=42.46 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (955)
.+++++|||||||.++.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999999753
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=57.88 E-value=5.7 Score=42.24 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=24.9
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
..|+.+.+.+|+|||||...-+.+ ..+ .+.++..+|
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~-gl~--~G~I~~~v~ 159 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLI-HFL--GGSVLSFAN 159 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHH-HHH--TCEEECGGG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh-hhc--CceEEEEec
Confidence 678899999999999998754432 222 556654444
No 298
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=57.81 E-value=5.9 Score=42.73 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (955)
-++++||||||||.++.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 57899999999998763
No 299
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=57.74 E-value=5 Score=39.78 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=17.9
Q ss_pred HHhcCCcEEEEcCCCCchHHHHH
Q 002183 87 CLERNESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 87 ~l~~g~~vlv~apTGsGKTl~~~ 109 (955)
.+..|+-+.+.+|+|||||...-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 57889999999999999998753
No 300
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=57.69 E-value=5 Score=39.50 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=18.4
Q ss_pred hcCCcEEEEcCCCCchHHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~ 111 (955)
..|..+++.+|.|||||.++-..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 35778999999999999986543
No 301
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=57.66 E-value=4.3 Score=38.93 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=18.0
Q ss_pred hcCCcEEEEcCCCCchHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~ 110 (955)
..|+-+.+.+|+|||||..+-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3577788999999999997654
No 302
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=57.58 E-value=12 Score=51.31 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=41.8
Q ss_pred hhhhcCCCCCCHHHHHHH----HHHhcCCcEEEEcCCCCchHHHHHHHH--HHHHhcCCeEEEEccChhhHHH
Q 002183 68 EMAKTYSFELDPFQRVSV----ACLERNESVLVSAHTSAGKTAVAEYAI--AMAFRDKQRVIYTSPLKALSNQ 134 (955)
Q Consensus 68 ~~~~~~~f~l~~~Q~~ai----~~l~~g~~vlv~apTGsGKTl~~~~~i--~~~l~~~~~vl~l~PtkaLa~Q 134 (955)
......++.+.+.+..-+ ..+...+.+++.||||||||.++-... +..+......+++...+++..+
T Consensus 896 ~~~~~~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~ 968 (2695)
T 4akg_A 896 DAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKE 968 (2695)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHH
T ss_pred HHHHHcCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHH
Confidence 344556788777764332 334677889999999999999876533 1222222334555555666553
No 303
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=57.48 E-value=8.7 Score=41.80 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
...+++.+|+|+|||.++-... .. .+..++++..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia-~~--~~~~~~~i~~ 150 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIA-SQ--SGATFFSISA 150 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHH-HH--TTCEEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHH-HH--cCCeEEEEeh
Confidence 5689999999999999875432 22 2444554443
No 304
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=57.48 E-value=3.7 Score=39.68 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~ 111 (955)
.|..+++.++.|||||.++-..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999987553
No 305
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=57.27 E-value=4.4 Score=38.76 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.|..+++.++.|||||.++-.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356788999999999997654
No 306
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=57.12 E-value=26 Score=34.11 Aligned_cols=65 Identities=17% Similarity=0.075 Sum_probs=50.1
Q ss_pred cCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceE
Q 002183 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (955)
Q Consensus 118 ~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (955)
.+.++||.++++.-+...+..|....-.+..++|+.+. +...+|+|+|. .+.+|- .+.++++|
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~Gl-di~~v~~V 126 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASKGL-DFPAIQHV 126 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHTTC-CCCCCSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhcCC-CcccCCEE
Confidence 36789999999999999999998877788899998653 24678999993 233443 46778888
Q ss_pred EE
Q 002183 187 IF 188 (955)
Q Consensus 187 Ii 188 (955)
|.
T Consensus 127 I~ 128 (191)
T 2p6n_A 127 IN 128 (191)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 307
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=56.90 E-value=7.9 Score=40.98 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=49.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEI 168 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~ 168 (955)
+..+++++++|+|||..+..........+.+++++. |.++.+.++.+.+.+.. ++.++.+... ..|..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~-~v~v~~~~~~---------~~p~~ 167 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQI-GVPVYGEPGE---------KDVVG 167 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHH-TCCEECCTTC---------CCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccC-CeEEEecCCC---------CCHHH
Confidence 345778999999999865543333334566666654 34455554444444332 2223333211 13433
Q ss_pred H-HHHHhcCCccCCccceEEEEccccCC
Q 002183 169 L-RGMLYRGSEVLKEVAWVIFDEIHYMK 195 (955)
Q Consensus 169 L-~~~l~~~~~~l~~l~~vIiDEaH~l~ 195 (955)
+ ...+.... -.++++||+|=+-.+.
T Consensus 168 ~~~~~l~~~~--~~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 168 IAKRGVEKFL--SEKMEIIIVDTAGRHG 193 (297)
T ss_dssp HHHHHHHHHH--HTTCSEEEEECCCSCC
T ss_pred HHHHHHHHHH--hCCCCEEEEeCCCCcc
Confidence 3 23332210 1467899999976553
No 308
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=56.20 E-value=6.8 Score=39.41 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=18.2
Q ss_pred HhcCCcEEEEcCCCCchHHHHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~ 110 (955)
+..|+-+.+++|.|||||...-.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 56788899999999999997543
No 309
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=55.53 E-value=6.8 Score=43.24 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (955)
-++|+||||||||.++.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 46789999999998753
No 310
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=55.28 E-value=39 Score=34.54 Aligned_cols=122 Identities=13% Similarity=0.062 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhcCCccC----CC------ccchhhhhhhcccCCchhHHHHHHhhCCCCCCCHHHHHHHhhccccccCCc
Q 002183 762 ELKNRSRVLKKLGHIDA----DG------VVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSS 831 (955)
Q Consensus 762 e~~~~~~VL~~lgyid~----~~------~vt~KGrvA~eI~s~~eLlltEll~~g~f~~l~p~eiaAllS~~v~~~~~~ 831 (955)
..-..++=|++.|||.. ++ .+|.||+-..+-.. + .+.+++ ++++.+ ..+
T Consensus 66 t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~--~-~~~~~~-eq~s~E-----------------~~~ 124 (250)
T 1p4x_A 66 DLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERV--T-LFDQII-KQFNLA-----------------DQS 124 (250)
T ss_dssp GTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHH--H-HHHHHH-HHHHHH-----------------TTC
T ss_pred hHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHHH--H-HHHHHH-HHHhcc-----------------ccc
Confidence 45578888999999942 22 48889987422110 0 011111 222221 000
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhhccCCccHHHHHHHHhCC---CCHHHHHhhcCCCcchHHH
Q 002183 832 EQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKG---ATFAEVIQMTDIFEGSIIR 908 (955)
Q Consensus 832 ~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~l~~~v~~Wa~G---~~f~~i~~~t~~~EG~ivR 908 (955)
-.+.++-.+...+.....+......+..++|+... .+.-+.+-|.+| .+-.+|.+...+..+.+.|
T Consensus 125 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gLt~~-----------q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~ 193 (250)
T 1p4x_A 125 ESQMIPKDSKEFLNLMMYTMYFKNIIKKHLTLSFV-----------EFTILAIITSQNKNIVLLKDLIETIHHKYPQTVR 193 (250)
T ss_dssp CSSCSCCSHHHHHHHHHHHHHHHHHHHHHCSSCHH-----------HHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhhCCCCHH-----------HHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHH
Confidence 01112223444333333344444556667887433 222334456543 7999999999999999999
Q ss_pred HHHHHHH
Q 002183 909 SARRLDE 915 (955)
Q Consensus 909 ~~rRl~e 915 (955)
.+.||++
T Consensus 194 ~v~rLe~ 200 (250)
T 1p4x_A 194 ALNNLKK 200 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999986
No 311
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=55.01 E-value=7.7 Score=42.10 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=27.4
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHh---c---CCeEEEEccCh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFR---D---KQRVIYTSPLK 129 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~---~---~~~vl~l~Ptk 129 (955)
.|+-+.+.+|+|||||..+...+..... . +++++|+.-..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4567899999999999876654443321 1 36778886543
No 312
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=54.68 E-value=7.8 Score=30.98 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=20.0
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHH
Q 002183 894 EVIQMTDIFEGSIIRSARRLDEFLN 918 (955)
Q Consensus 894 ~i~~~t~~~EG~ivR~~rRl~ellr 918 (955)
+++..-++.||||||.++.++....
T Consensus 42 ~~Lr~LGi~eGDIIrVmk~l~~k~~ 66 (72)
T 3idw_A 42 SMLRTLGLREGDIVRVMKHLDKKFG 66 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCchhhHHHHHHHHHHHhC
Confidence 4566667889999999999987643
No 313
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=54.51 E-value=6.2 Score=38.35 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=19.3
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~ 111 (955)
+..+..+++.+++|||||.++-..
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHH
Confidence 345677899999999999987554
No 314
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.39 E-value=9.5 Score=42.81 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (955)
.+.+|+.+|+|+|||+.+-
T Consensus 243 prGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CSEEEECSCTTSSHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHH
Confidence 4789999999999999763
No 315
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=54.11 E-value=5.9 Score=43.40 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
..++++.+|+|+|||.++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 56899999999999998754
No 316
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.66 E-value=12 Score=41.54 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (955)
.+.+|+.+|+|+|||+.+-
T Consensus 216 prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CSEEEEESSTTTTHHHHHH
T ss_pred CCCCceECCCCchHHHHHH
Confidence 3679999999999999763
No 317
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=53.51 E-value=14 Score=42.30 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=26.2
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhc---CCeEEEEccCh
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRD---KQRVIYTSPLK 129 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~---~~~vl~l~Ptk 129 (955)
..+.+++|+++||||||...-..+...+.+ +.--+|+...+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 346789999999999998765544433322 33344554444
No 318
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=53.32 E-value=16 Score=28.54 Aligned_cols=50 Identities=12% Similarity=0.071 Sum_probs=38.0
Q ss_pred CCccHHHHHHH-HhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhh
Q 002183 875 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAA 924 (955)
Q Consensus 875 ~~~~l~~~v~~-Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ellrq~~~aa 924 (955)
+.+.--.++.. +..|.|+.+|.+..+++++.+=+.+.|.-.-|++.-...
T Consensus 16 L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~ 66 (70)
T 2o8x_A 16 LTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPD 66 (70)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcc
Confidence 55555566655 699999999999999999999999999888887655443
No 319
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=53.20 E-value=5.6 Score=38.58 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCchHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~ 111 (955)
+.-+++.++.|||||.++-..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456889999999999987543
No 320
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=52.71 E-value=13 Score=36.68 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~ 109 (955)
.|.-+.+.+|+|||||..+-
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678899999999998653
No 321
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=52.57 E-value=15 Score=35.47 Aligned_cols=33 Identities=15% Similarity=0.022 Sum_probs=20.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
.+++.|+.|||||.++-......-..|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 367899999999998755433222235544443
No 322
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=52.47 E-value=15 Score=35.29 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
.-+.+++++|||||.....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~ 25 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKK 25 (174)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHH
Confidence 3477899999999986543
No 323
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=52.29 E-value=16 Score=35.95 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=23.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEE
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIY 124 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~ 124 (955)
++.-+++.++.|||||.++-......-..+..+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~ 42 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL 42 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 56678999999999999876543322223444433
No 324
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=51.95 E-value=5.1 Score=38.92 Aligned_cols=20 Identities=10% Similarity=0.277 Sum_probs=16.0
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~ 111 (955)
.-+++.+|+|||||..+-..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 45788999999999976543
No 325
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=51.95 E-value=5.7 Score=41.84 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
.-++++||+|||||.++-.
T Consensus 34 ~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp EEEEEECCTTSCTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588899999999997643
No 326
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=51.54 E-value=13 Score=42.24 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=24.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE-ccC
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT-SPL 128 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l-~Pt 128 (955)
|.-+.+.+++|||||...-......-..++++++. ..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 44577899999999986544322222346677665 444
No 327
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=51.43 E-value=7.2 Score=38.00 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=19.0
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~ 111 (955)
+..+..+++.+++|||||.++-..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 345667899999999999987543
No 328
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=51.36 E-value=6.6 Score=38.59 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.3
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
..++++|+.|||||.++-.
T Consensus 19 ~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SCEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999998754
No 329
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=51.32 E-value=7.8 Score=36.71 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~ 111 (955)
+++++.++.|||||.++-..
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57899999999999987654
No 330
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=51.10 E-value=12 Score=26.71 Aligned_cols=34 Identities=6% Similarity=-0.138 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCCHHHHHhhcCCCcchHHHHHHHH
Q 002183 880 MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRL 913 (955)
Q Consensus 880 ~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl 913 (955)
..++..|..|.|..+|.+..++....|-|++++.
T Consensus 12 ~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 3667778999999999999999999999998764
No 331
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=50.94 E-value=7.7 Score=37.37 Aligned_cols=20 Identities=10% Similarity=0.258 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~ 111 (955)
..+++.+++|||||.++-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45889999999999987543
No 332
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=50.85 E-value=18 Score=43.81 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=21.5
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
++++.+|||+|||.++-.........+...+++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i 555 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRI 555 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE
Confidence 599999999999998754333332334444433
No 333
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=50.66 E-value=7.2 Score=39.20 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.+..+++.|++|||||.++-.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHH
Confidence 456789999999999998654
No 334
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=50.65 E-value=16 Score=36.22 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=22.9
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 95 lv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
+....+|.|||.++.--.......|.+|+++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 345568999998876544444456889988644
No 335
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=50.13 E-value=7.7 Score=37.08 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=16.1
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
.+++.++.|||||.++...
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 5889999999999987543
No 336
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=49.99 E-value=21 Score=45.53 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=41.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhc-C-----------CeEEEEccChhhHHHHHHHHHHhcC
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRD-K-----------QRVIYTSPLKALSNQKYRELHQEFK 144 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~-~-----------~~vl~l~PtkaLa~Q~~~~l~~~~~ 144 (955)
+.+|.|.-|||||.+-.--++..+.. | .++|+++=|++-+.+...++.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 45999999999999877767776642 2 3799999999999999888877643
No 337
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=49.87 E-value=21 Score=34.85 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=17.7
Q ss_pred cCCcEEEEcCCCCchHHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~ 111 (955)
.+.-+++.|+.|||||.++-..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 3456889999999999987554
No 338
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=49.80 E-value=14 Score=42.15 Aligned_cols=118 Identities=11% Similarity=0.101 Sum_probs=60.0
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc--ChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeH-HHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP--LKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTT-EIL 169 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P--tkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tp-e~L 169 (955)
.+++++++|+|||..+.-.+......|.+++++.. .+..+.++...+....+ +.++...... .| +.+
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~-i~v~~~~~~~---------dp~~i~ 172 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKAR-IPFYGSYTEM---------DPVIIA 172 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHT-CCEEECCCCS---------CHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccC-ceEEccCCCC---------CHHHHH
Confidence 57789999999998765544444455777777664 45555444443333221 2222211110 12 222
Q ss_pred HHHHhcCCccCCccceEEEEccccCCCCCChHHHHHH---HHhCCCcceEEEeccccC
Q 002183 170 RGMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEES---IIFLPPAIKMVFLSATMS 224 (955)
Q Consensus 170 ~~~l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~i---i~~l~~~~~~v~lSAT~~ 224 (955)
...+... ...+.+++|+|-+=+.... ...+.++ .....++.-++.+.|+..
T Consensus 173 ~~al~~~--~~~~~DvvIIDTpG~~~~~--~~l~~el~~~~~~i~pd~vllVvDa~~g 226 (504)
T 2j37_W 173 SEGVEKF--KNENFEIIIVDTSGRHKQE--DSLFEEMLQVANAIQPDNIVYVMDASIG 226 (504)
T ss_dssp HHHHHHH--HHTTCCEEEEEECCCCTTC--HHHHHHHHHHHHHHCCSEEEEEEETTCC
T ss_pred HHHHHHH--HHCCCcEEEEeCCCCcccc--hhHHHHHHHHHhhhcCceEEEEEecccc
Confidence 2222211 0146789999998655421 2233332 222234455777777764
No 339
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=49.77 E-value=7.5 Score=39.81 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
+.+++.+|+|+|||..+-.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARA 68 (254)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4589999999999987643
No 340
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=49.77 E-value=6.8 Score=38.76 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.|.-+.+.+|+|||||..+-+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~ 25 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQA 25 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHH
Confidence 455678999999999987643
No 341
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=49.57 E-value=6.9 Score=39.48 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=14.2
Q ss_pred hcCCcEEEEcCCCCchHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~ 110 (955)
..|+-+.+.+|+|||||.+.-+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANK 46 (231)
T ss_dssp ECCCEEEEECSCC----CHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 5677888999999999987543
No 342
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=49.54 E-value=58 Score=38.56 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=57.7
Q ss_pred HHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEecccc-----------cCCCCCEEEEeHHHHHHHHhcCCccC
Q 002183 112 IAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVT-----------LSPNASCLVMTTEILRGMLYRGSEVL 180 (955)
Q Consensus 112 i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l 180 (955)
+......+.++||.++++.-+......+.+..-.+..++|+.+ .+...+|+|+|. .+.+| ..+
T Consensus 432 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~~G-lDi 505 (664)
T 1c4o_A 432 IRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLREG-LDI 505 (664)
T ss_dssp HHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCTT-CCC
T ss_pred HHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhhcC-ccC
Confidence 3444457889999999999999999999987768888888863 235678999983 33344 346
Q ss_pred CccceEEEEccccC
Q 002183 181 KEVAWVIFDEIHYM 194 (955)
Q Consensus 181 ~~l~~vIiDEaH~l 194 (955)
.++++||+=+++..
T Consensus 506 p~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 506 PEVSLVAILDADKE 519 (664)
T ss_dssp TTEEEEEETTTTSC
T ss_pred CCCCEEEEeCCccc
Confidence 78888888776543
No 343
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=49.40 E-value=6.9 Score=37.91 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
+..+++.+++|||||.++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34688999999999998754
No 344
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=49.09 E-value=19 Score=35.32 Aligned_cols=23 Identities=9% Similarity=0.303 Sum_probs=18.6
Q ss_pred cCCcEEEEcCCCCchHHHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i 112 (955)
.+.-+++.|+.|||||.++-...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 45678999999999999876543
No 345
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=48.83 E-value=8.4 Score=38.44 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCCchHHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~ 111 (955)
.+..+++.+++|||||.++-..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3567899999999999987554
No 346
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=48.71 E-value=11 Score=37.32 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.1
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
.+++.|++|||||.++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999987654
No 347
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=48.69 E-value=51 Score=39.00 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=59.0
Q ss_pred HHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccC
Q 002183 112 IAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVL 180 (955)
Q Consensus 112 i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l 180 (955)
+...+..+.++||.++++.-+......+.+..-++..++|+.+. +...+|+|+|. .+.+|- .+
T Consensus 438 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~Gl-Di 511 (661)
T 2d7d_A 438 IQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLREGL-DI 511 (661)
T ss_dssp HHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCSTTC-CC
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhCCc-cc
Confidence 34444578899999999999999999999876688888888631 34678999984 344443 46
Q ss_pred CccceEEEEccccC
Q 002183 181 KEVAWVIFDEIHYM 194 (955)
Q Consensus 181 ~~l~~vIiDEaH~l 194 (955)
.++++||+=+++..
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 78999999888754
No 348
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=48.49 E-value=35 Score=37.34 Aligned_cols=72 Identities=21% Similarity=0.097 Sum_probs=53.9
Q ss_pred HHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCcc
Q 002183 111 AIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEV 179 (955)
Q Consensus 111 ~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~ 179 (955)
.++.....+.++||.++++.-+...++.+.+....+..++|+.+. +...+|+|+|. .+..|- .
T Consensus 268 ~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~Gi-d 341 (417)
T 2i4i_A 268 DLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARGL-D 341 (417)
T ss_dssp HHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTTS-C
T ss_pred HHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcCC-C
Confidence 333333457899999999999999999999877789999998753 24678999995 344443 4
Q ss_pred CCccceEEE
Q 002183 180 LKEVAWVIF 188 (955)
Q Consensus 180 l~~l~~vIi 188 (955)
+.++++||.
T Consensus 342 ip~v~~Vi~ 350 (417)
T 2i4i_A 342 ISNVKHVIN 350 (417)
T ss_dssp CCCEEEEEE
T ss_pred cccCCEEEE
Confidence 677888875
No 349
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=48.41 E-value=8.7 Score=37.65 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCchHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~ 111 (955)
+..+++.+++|||||.++-..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 346889999999999987544
No 350
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=48.30 E-value=35 Score=39.63 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHh-----cCCcEEEEcCCCCchHHHHHHH
Q 002183 75 FELDPFQRVSVACLE-----RNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 75 f~l~~~Q~~ai~~l~-----~g~~vlv~apTGsGKTl~~~~~ 111 (955)
|--++-..+.+.... ..+-+.|+|+.|.|||..+.-.
T Consensus 126 ~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~ 167 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEA 167 (591)
T ss_dssp CCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHH
T ss_pred ecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHH
Confidence 444555666665543 2346889999999999877544
No 351
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=48.03 E-value=9.7 Score=44.75 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=20.9
Q ss_pred HHHhcCCcEEEEcCCCCchHHHHHH
Q 002183 86 ACLERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 86 ~~l~~g~~vlv~apTGsGKTl~~~~ 110 (955)
..+..|+.+++.+|+|+|||..+-.
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHHH
Confidence 3357889999999999999997643
No 352
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=47.99 E-value=17 Score=38.90 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=25.4
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
-+++++..|.|||.++.-........|.+|+++..
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 45678999999999876544444456888888763
No 353
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=47.93 E-value=8.7 Score=36.41 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~ 111 (955)
..+++.+++|||||.++-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35889999999999987553
No 354
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=47.83 E-value=8.9 Score=38.08 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=16.0
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
.+++.|++|||||.++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999987653
No 355
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=47.78 E-value=8.5 Score=37.96 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCCchHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~ 110 (955)
..+.-+.+.+++|||||.++-.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3455688999999999987644
No 356
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=47.68 E-value=6.4 Score=40.64 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
...+++.+|+|+|||..+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~ 63 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKA 63 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 45699999999999998754
No 357
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=47.45 E-value=17 Score=39.05 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=24.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
-+++++..|.|||.++..........|.+|+++.
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4667899999999887654444446688888774
No 358
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=47.41 E-value=10 Score=37.06 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=18.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~ 111 (955)
.|..+++.++.|||||.++-..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4667899999999999987543
No 359
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=47.39 E-value=2.6 Score=35.50 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=37.2
Q ss_pred CCccH-HHHHHHHhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHh
Q 002183 875 VRPFL-MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAA 923 (955)
Q Consensus 875 ~~~~l-~~~v~~Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ellrq~~~a 923 (955)
+.+.+ ..+|..+..|.|..+|++..++....|=||+++..+.-.+.+..
T Consensus 23 ys~e~k~~~v~~~~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~~~~~~ 72 (87)
T 2elh_A 23 LTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKLRFMSRQS 72 (87)
T ss_dssp CCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHhccccccCC
Confidence 34444 35666667899999999999999999999998877655554443
No 360
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=47.34 E-value=12 Score=40.83 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.1
Q ss_pred cEEEEcCCCCchHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~ 110 (955)
-.++++|||||||.++..
T Consensus 25 ~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 577899999999988743
No 361
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=47.28 E-value=12 Score=38.46 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~ 111 (955)
.|+.+++.+++|||||.++-..
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3899999999999999986543
No 362
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=47.25 E-value=12 Score=39.89 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=24.9
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEccC
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPL 128 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~Pt 128 (955)
-+++.++.|||||...-. +.....+.++.++.|.
T Consensus 6 v~~i~G~~GaGKTTll~~--l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRH--ILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEEESSSSSCHHHHHH--HHHSCCCCCEEEECSS
T ss_pred EEEEEecCCCCHHHHHHH--HHhhcCCCcEEEEEec
Confidence 478899999999986433 2233467788888886
No 363
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=47.22 E-value=9.5 Score=40.86 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=16.6
Q ss_pred HhcCCc--EEEEcCCCCchHHHH
Q 002183 88 LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 88 l~~g~~--vlv~apTGsGKTl~~ 108 (955)
+.+|.+ ++..++||||||...
T Consensus 73 ~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 73 VLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHH
T ss_pred HhCCCeEEEEEECCCCCCCceEe
Confidence 356665 677999999999874
No 364
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=47.19 E-value=43 Score=35.27 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=56.5
Q ss_pred CCchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc-----------CCCCCEEEEeHHHH
Q 002183 101 SAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEIL 169 (955)
Q Consensus 101 GsGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L 169 (955)
...|.-+. .-++.. ..+.++||.++++.-+...++.+....-.+..++|+.+. +...+|+|+|
T Consensus 12 ~~~K~~~L-~~ll~~-~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT---- 85 (300)
T 3i32_A 12 VRGRLEVL-SDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT---- 85 (300)
T ss_dssp SSSHHHHH-HHHHHH-HCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC----
T ss_pred HHHHHHHH-HHHHHh-cCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe----
Confidence 35565432 223322 347899999999999999999998876688899998753 2467899999
Q ss_pred HHHHhcCCccCCccceEEE
Q 002183 170 RGMLYRGSEVLKEVAWVIF 188 (955)
Q Consensus 170 ~~~l~~~~~~l~~l~~vIi 188 (955)
+.+.++ ..+.++++||.
T Consensus 86 -~va~~G-idi~~v~~VI~ 102 (300)
T 3i32_A 86 -DVAARG-LDIPQVDLVVH 102 (300)
T ss_dssp -STTTCS-TTCCCCSEEEE
T ss_pred -chhhcC-ccccceeEEEE
Confidence 344444 34678888874
No 365
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=46.76 E-value=17 Score=37.54 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=22.6
Q ss_pred CCHHHHHH-HHHHhcCC-----cEEEEcCCCCchHHHHH
Q 002183 77 LDPFQRVS-VACLERNE-----SVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 77 l~~~Q~~a-i~~l~~g~-----~vlv~apTGsGKTl~~~ 109 (955)
.+|.+-.. +..+++++ .+++.+|+|+|||+.+.
T Consensus 84 ~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 84 YDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 44555433 44454443 58999999999999764
No 366
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=46.64 E-value=13 Score=37.04 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~ 111 (955)
.+..+++.+++|||||.++-..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3457899999999999987654
No 367
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=46.59 E-value=10 Score=37.89 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=16.9
Q ss_pred CCcEEEEcCCCCchHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~ 111 (955)
+..+.+.+|+|||||.++-+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 356889999999999987543
No 368
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=46.37 E-value=9.9 Score=41.43 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=22.0
Q ss_pred CCHHHHHHHHH--------HhcCCc--EEEEcCCCCchHHHH
Q 002183 77 LDPFQRVSVAC--------LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 77 l~~~Q~~ai~~--------l~~g~~--vlv~apTGsGKTl~~ 108 (955)
++.-|.+.+.. +..|.+ ++..++||||||...
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 44556655533 356665 677999999999874
No 369
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=45.75 E-value=17 Score=41.79 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=27.0
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHH-hcCCeEEEEcc
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAF-RDKQRVIYTSP 127 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l-~~~~~vl~l~P 127 (955)
..|+.+++.+|+|||||..+...++..+ ..+...+|+.-
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4678899999999999987665433333 33555666653
No 370
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=45.68 E-value=16 Score=41.41 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
...++++.||+|+|||.++..
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 456899999999999998754
No 371
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=45.56 E-value=10 Score=36.56 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=15.9
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
.+++.+++|||||.++-..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5788999999999987553
No 372
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=45.53 E-value=5.9 Score=42.70 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=17.6
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
...++++.||+|+|||..+-.
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHH
T ss_pred CCceEEEECCCCccHHHHHHH
Confidence 456799999999999997754
No 373
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=45.42 E-value=19 Score=42.06 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
.+-+++++..|.|||.++..........|.+++++.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 355788999999999987665555556788888865
No 374
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=45.38 E-value=8 Score=38.19 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.1
Q ss_pred EEEEcCCCCchHHHHHHH
Q 002183 94 VLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~ 111 (955)
+++.|+.|||||..+...
T Consensus 3 I~i~G~~GsGKsTl~~~L 20 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKL 20 (214)
T ss_dssp EEEEEEEEEEHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 678999999999987553
No 375
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=45.07 E-value=11 Score=40.67 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=16.6
Q ss_pred HhcCCc--EEEEcCCCCchHHHH
Q 002183 88 LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 88 l~~g~~--vlv~apTGsGKTl~~ 108 (955)
+.+|.+ ++..++||||||...
T Consensus 81 ~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 81 SLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp GGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHCCcceeEEEeCCCCCCCceEe
Confidence 366765 567899999999875
No 376
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=45.00 E-value=14 Score=37.18 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=18.5
Q ss_pred hcCCcEEEEcCCCCchHHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~ 111 (955)
..+..+++.+++|||||.++...
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 34567999999999999987554
No 377
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=44.98 E-value=14 Score=45.34 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
.++++.+|||+|||.++-.........+...+++
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 3799999999999998754333332334444444
No 378
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=44.77 E-value=11 Score=35.40 Aligned_cols=19 Identities=16% Similarity=0.329 Sum_probs=15.8
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
.+++.++.|||||.++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4789999999999987553
No 379
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.75 E-value=12 Score=41.48 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=17.6
Q ss_pred HHHhcCCc--EEEEcCCCCchHHHH
Q 002183 86 ACLERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 86 ~~l~~g~~--vlv~apTGsGKTl~~ 108 (955)
..+..|.+ ++..++||||||...
T Consensus 134 ~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 134 QSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhCCcceEEEEECCCCCCCceEe
Confidence 33467765 567899999999875
No 380
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=44.63 E-value=21 Score=36.43 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=22.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
.++++..|.|||.++.-........|.+|+++=
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 6 TVASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345788999999877654433335677888773
No 381
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=44.55 E-value=12 Score=40.47 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=16.0
Q ss_pred hcCCc--EEEEcCCCCchHHHH
Q 002183 89 ERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~--vlv~apTGsGKTl~~ 108 (955)
.+|-+ ++..++||||||...
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHH
T ss_pred cCCceeEEEEECCCCCCCcEec
Confidence 56655 667999999999875
No 382
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=44.35 E-value=10 Score=40.96 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=22.1
Q ss_pred CCHHHHHHHHH--------HhcCCc--EEEEcCCCCchHHHH
Q 002183 77 LDPFQRVSVAC--------LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 77 l~~~Q~~ai~~--------l~~g~~--vlv~apTGsGKTl~~ 108 (955)
++.-|.+.+.. +.+|-+ ++..++||||||...
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 44556666543 356655 677999999999874
No 383
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=44.33 E-value=19 Score=36.12 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=22.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 95 lv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
+.++..|.|||.++..........|.+|+++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 44667899999877654443335677888874
No 384
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=44.26 E-value=20 Score=38.73 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=24.4
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
+++++..|.|||.++.-........|.+|+++.
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566899999999987654444445688888876
No 385
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=44.26 E-value=22 Score=35.43 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=24.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
.|.-+++.++.|||||..+.......-..+..++.+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 466678899999999998765433332345555544
No 386
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=44.23 E-value=11 Score=40.69 Aligned_cols=32 Identities=22% Similarity=0.137 Sum_probs=22.1
Q ss_pred CCHHHHHHHHH--------HhcCCc--EEEEcCCCCchHHHH
Q 002183 77 LDPFQRVSVAC--------LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 77 l~~~Q~~ai~~--------l~~g~~--vlv~apTGsGKTl~~ 108 (955)
++.-|.+.+.. +.+|.+ ++..++||||||...
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 44556665543 356665 677999999999874
No 387
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=44.15 E-value=10 Score=39.40 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
..+++.+|+|+|||..+-.
T Consensus 74 ~gvll~Gp~GtGKTtl~~~ 92 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARA 92 (278)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHH
Confidence 3589999999999987643
No 388
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=44.14 E-value=24 Score=35.57 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=24.3
Q ss_pred cEEEEc-CCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 93 SVLVSA-HTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 93 ~vlv~a-pTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
.++|++ .||+|||++...-+....++|.++.|.=|
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 355544 59999999876555445567888888655
No 389
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=44.01 E-value=32 Score=39.46 Aligned_cols=74 Identities=11% Similarity=-0.042 Sum_probs=56.9
Q ss_pred CCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHH
Q 002183 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (955)
Q Consensus 329 ~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~ 408 (955)
.+.+||.++++.-+.+.+..|...+.. +..+||+.+..++.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~---------------------------------------~~~l~~~~~~~~~~ 105 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVA---------------------------------------AACLNSTQTREQQL 105 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCC---------------------------------------EEEECTTSCHHHHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCc---------------------------------------EEEEeCCCCHHHHH
Confidence 367999999999999888888765443 67899999999999
Q ss_pred HHHHHHhcCCccEEEEccc-c-----cccCCCCCcEEEE
Q 002183 409 LVELLFQEGLVKALFATET-F-----AMGLNMPAKTVVF 441 (955)
Q Consensus 409 ~v~~~F~~g~i~VLvaT~~-l-----a~Gidip~~~vVi 441 (955)
.+...+..|..+++++|.- + ...++...+.+||
T Consensus 106 ~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 106 EVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp HHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred HHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 9999999999999999953 2 1224445566554
No 390
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=43.82 E-value=21 Score=38.74 Aligned_cols=34 Identities=18% Similarity=0.133 Sum_probs=23.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
.+.+++++|+|||..+.--+......|.++.++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 5788999999999876544333334566665553
No 391
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=43.81 E-value=13 Score=40.06 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.6
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
..+++.+|+|+|||..+-.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 6799999999999997644
No 392
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=43.76 E-value=11 Score=38.71 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=18.5
Q ss_pred hcCCcEEEEcCCCCchHHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~ 111 (955)
..+..+.+.+|+|||||.++-+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~L 47 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKAL 47 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHH
Confidence 45677889999999999986543
No 393
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=43.68 E-value=89 Score=33.79 Aligned_cols=65 Identities=22% Similarity=0.252 Sum_probs=51.7
Q ss_pred cCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceE
Q 002183 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (955)
Q Consensus 118 ~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (955)
.+.++|+.++++.-+...++.+.+....+..++|+.+. +...+|+|+|. .+..| ..+.++++|
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-idip~~~~V 338 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG-IDVEQVSVV 338 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTSS-CCCTTEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccccC-CCccCCCEE
Confidence 56799999999999999999999987789999998752 34678999994 44444 346788888
Q ss_pred EE
Q 002183 187 IF 188 (955)
Q Consensus 187 Ii 188 (955)
|.
T Consensus 339 i~ 340 (412)
T 3fht_A 339 IN 340 (412)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 394
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=43.59 E-value=10 Score=37.11 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
..+++.++.|||||.++-.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~ 34 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3578899999999998643
No 395
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=43.47 E-value=11 Score=35.07 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (955)
-.++.+|+|||||.+..
T Consensus 25 ~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLD 41 (149)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46889999999998743
No 396
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=43.41 E-value=11 Score=40.95 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=16.3
Q ss_pred HhcCCc--EEEEcCCCCchHHHH
Q 002183 88 LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 88 l~~g~~--vlv~apTGsGKTl~~ 108 (955)
+..|.+ ++..+.||||||...
T Consensus 84 ~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 84 VIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhCCCceEEEEeCCCCCCCceEE
Confidence 356765 667999999999864
No 397
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=43.40 E-value=7.9 Score=37.14 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=13.0
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~ 110 (955)
+..+++.++.|||||.++-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999998755
No 398
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=43.34 E-value=11 Score=38.55 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=18.5
Q ss_pred cCCcEEEEcCCCCchHHHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i 112 (955)
.+..+++.+|.|||||.++....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45578999999999999876543
No 399
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=43.26 E-value=44 Score=36.59 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHH---hcCCcEEEEcCCCCchHHHHHH
Q 002183 77 LDPFQRVSVACL---ERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 77 l~~~Q~~ai~~l---~~g~~vlv~apTGsGKTl~~~~ 110 (955)
+-..=.++|+.+ ..|+.+.+.+|+|+|||.....
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 344555777775 6799999999999999997654
No 400
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=42.89 E-value=13 Score=37.05 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=17.3
Q ss_pred CCcEEEEcCCCCchHHHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~ 111 (955)
+..+++.+++|||||.++-..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 456889999999999987554
No 401
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=42.88 E-value=18 Score=35.32 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=62.5
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc--cChhhHHHHHHHHHHhcCCeeEEecccccCCCCCEEEEeHHHHHHH
Q 002183 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS--PLKALSNQKYRELHQEFKDVGLMTGDVTLSPNASCLVMTTEILRGM 172 (955)
Q Consensus 95 lv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~--PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~~~~~~IlV~Tpe~L~~~ 172 (955)
+.+...|+|||.++..........|.+|+++= |...+.. ++.. ...+.+++-+.++.+...
T Consensus 6 v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~--------~~~~---------~~~~~~~~~~~~~~l~~~ 68 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTN--------WSKA---------GKAAFDVFTAASEKDVYG 68 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH--------HHTT---------SCCSSEEEECCSHHHHHT
T ss_pred EEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHH--------HHhc---------CCCCCcEEecCcHHHHHH
Confidence 34567889999987654444445777887774 3333322 1110 011244555555667666
Q ss_pred HhcCCccCCccceEEEEccccCCCCCChHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhh
Q 002183 173 LYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHL 236 (955)
Q Consensus 173 l~~~~~~l~~l~~vIiDEaH~l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~ 236 (955)
+..- -.++++||+|=.-.+ +......+.. .+.-++-+.++... .....++..+
T Consensus 69 l~~l---~~~yD~viiD~~~~~-----~~~~~~~l~~--ad~viiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 69 IRKD---LADYDFAIVDGAGSL-----SVITSAAVMV--SDLVIIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp HHHH---TTTSSEEEEECCSSS-----SHHHHHHHHH--CSEEEEEECSCTTT-HHHHHHHHHH
T ss_pred HHHh---cCCCCEEEEECCCCC-----CHHHHHHHHH--CCEEEEEecCCHHH-HHHHHHHHHH
Confidence 5532 235899999965433 2233333333 23446666666666 5555555544
No 402
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=42.82 E-value=16 Score=39.65 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=16.3
Q ss_pred HhcCCc--EEEEcCCCCchHHHH
Q 002183 88 LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 88 l~~g~~--vlv~apTGsGKTl~~ 108 (955)
+.+|-+ ++..+.||||||...
T Consensus 100 ~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 100 ALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHH
T ss_pred HhCCCCEEEEEeCCCCCCccEEe
Confidence 356655 677999999999864
No 403
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=42.71 E-value=11 Score=37.06 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
.+.+.++.|||||.++-..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 4789999999999986543
No 404
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=42.66 E-value=15 Score=36.80 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCCchHHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~ 111 (955)
.+.+-+++.+|+|||||..+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 34456788999999999877554
No 405
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=42.61 E-value=31 Score=40.29 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=49.6
Q ss_pred CCcEEEEEcChHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhhcccccCCchhHHhHHHHhhcCeEeecCCCCHHHHH
Q 002183 329 FQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKDTVEQVFQNAVDCLNEEDRNLPAIELMLPLLKRGIAVHHSGLLPVIKE 408 (955)
Q Consensus 329 ~~~~IVF~~s~~~~~~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~gi~~~H~~l~~~~R~ 408 (955)
.+.+||.++++.-+.+.+..|...+.. ++.+||+++..++.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~---------------------------------------~~~l~~~~~~~~~~ 124 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGIS---------------------------------------ATMLNASSSKEHVK 124 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCC---------------------------------------EEECCSSCCHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCc---------------------------------------EEEEeCCCCHHHHH
Confidence 468999999999999888888664332 67899999999998
Q ss_pred HHHHHH--hcCCccEEEEcc
Q 002183 409 LVELLF--QEGLVKALFATE 426 (955)
Q Consensus 409 ~v~~~F--~~g~i~VLvaT~ 426 (955)
.+...+ ..+..+|+++|.
T Consensus 125 ~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 125 WVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp HHHHHHHCTTCCCCEEEECH
T ss_pred HHHHHhhcccCCCCEEEECh
Confidence 888888 578999999997
No 406
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=42.31 E-value=11 Score=36.72 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=15.5
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
.+++.|++|||||..+-..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 4788999999999976543
No 407
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=42.30 E-value=11 Score=39.34 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~ 109 (955)
+.+++.+|+|+|||+.+-
T Consensus 45 ~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp SEEEEESSTTSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 449999999999998764
No 408
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=42.28 E-value=12 Score=37.95 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
..|+-+.+.+|.|||||...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 46788999999999999853
No 409
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=42.09 E-value=12 Score=36.40 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=15.8
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
.+.+.+++|||||.++-..
T Consensus 10 ~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5778999999999987553
No 410
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=42.02 E-value=7.9 Score=39.76 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=15.8
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~ 110 (955)
..+++.+++|||||.++-.
T Consensus 33 ~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp EEEEEESCGGGTTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999997644
No 411
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=42.00 E-value=21 Score=36.67 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=21.8
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 95 lv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
+.++..|.|||.++.-........|.+|+++=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34677899999887654443335678888863
No 412
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=41.89 E-value=17 Score=36.10 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=16.1
Q ss_pred cEEEEcCCCCchHHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i 112 (955)
.+++.+|+||||++.+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999998876543
No 413
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=41.85 E-value=12 Score=40.96 Aligned_cols=32 Identities=31% Similarity=0.206 Sum_probs=23.1
Q ss_pred CCHHHHHHHHH--------HhcCCc--EEEEcCCCCchHHHH
Q 002183 77 LDPFQRVSVAC--------LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 77 l~~~Q~~ai~~--------l~~g~~--vlv~apTGsGKTl~~ 108 (955)
++.-|.+.+.. +..|.+ ++..++||||||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 55567777653 356655 667999999999864
No 414
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=41.83 E-value=13 Score=40.72 Aligned_cols=32 Identities=16% Similarity=0.020 Sum_probs=21.8
Q ss_pred CCHHHHHHHHH-------HhcCCc--EEEEcCCCCchHHHH
Q 002183 77 LDPFQRVSVAC-------LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 77 l~~~Q~~ai~~-------l~~g~~--vlv~apTGsGKTl~~ 108 (955)
++.-|.+.+.. +.+|-+ ++..+.||||||...
T Consensus 93 ~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 93 PGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp TTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred CcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 44456665543 256655 677999999999864
No 415
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=41.79 E-value=13 Score=35.70 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (955)
-.++.+|+|||||.+..
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 57889999999998754
No 416
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=41.46 E-value=13 Score=37.91 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=17.4
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.+..+++.+|.|||||..+-.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 457899999999999987644
No 417
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=41.28 E-value=58 Score=30.79 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=54.9
Q ss_pred CchHHHHHHHHHHHHhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc-----------CCCCCEEEEeHHHHH
Q 002183 102 AGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILR 170 (955)
Q Consensus 102 sGKTl~~~~~i~~~l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~ 170 (955)
..|.. ++..++.. ..+.++||.++++.-+...++.+....-.+..++|+.+. +....|+|+|.
T Consensus 16 ~~K~~-~L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~---- 89 (172)
T 1t5i_A 16 NEKNR-KLFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN---- 89 (172)
T ss_dssp GGHHH-HHHHHHHH-SCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS----
T ss_pred HHHHH-HHHHHHHh-CCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC----
Confidence 45543 23333333 245789999999999999999998887788899998752 34678999883
Q ss_pred HHHhcCCccCCccceEEE
Q 002183 171 GMLYRGSEVLKEVAWVIF 188 (955)
Q Consensus 171 ~~l~~~~~~l~~l~~vIi 188 (955)
.+..| ..+.++++||.
T Consensus 90 -~~~~G-ldi~~~~~Vi~ 105 (172)
T 1t5i_A 90 -LFGRG-MDIERVNIAFN 105 (172)
T ss_dssp -CCSTT-CCGGGCSEEEE
T ss_pred -chhcC-cchhhCCEEEE
Confidence 23333 33567777775
No 418
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=41.21 E-value=13 Score=36.46 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=15.3
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
.+.+.++.|||||.++-+.
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999986543
No 419
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=41.15 E-value=13 Score=41.73 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.5
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 002183 91 NESVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~ 109 (955)
..++++.+|+|+|||.++-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4689999999999999764
No 420
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=40.99 E-value=13 Score=40.34 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.7
Q ss_pred cCCc--EEEEcCCCCchHHHH
Q 002183 90 RNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 90 ~g~~--vlv~apTGsGKTl~~ 108 (955)
.|.+ ++..+.||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4665 688999999999864
No 421
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=40.90 E-value=13 Score=35.96 Aligned_cols=17 Identities=18% Similarity=0.552 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (955)
.+.+.+|.|||||...-
T Consensus 2 ~i~l~G~nGsGKTTLl~ 18 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVK 18 (178)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998653
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=40.87 E-value=18 Score=35.83 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=16.0
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
.+++.+++|||||.++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999987554
No 423
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=40.74 E-value=28 Score=40.13 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHh
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFR 117 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~ 117 (955)
..+++|.+.||||||.+.-..+...+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999876655555543
No 424
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=40.72 E-value=12 Score=40.79 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=21.8
Q ss_pred CCHHHHHHHHH--------HhcCCc--EEEEcCCCCchHHHH
Q 002183 77 LDPFQRVSVAC--------LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 77 l~~~Q~~ai~~--------l~~g~~--vlv~apTGsGKTl~~ 108 (955)
++.-|.+.+.. +.+|.+ ++..+.||||||...
T Consensus 77 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 77 PESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceec
Confidence 44456666543 355655 677999999999863
No 425
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=40.39 E-value=23 Score=36.00 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=21.7
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 95 lv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
+.++..|.|||.++.-........|.+|+++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 4467788999988765444444568888875
No 426
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=40.23 E-value=41 Score=35.77 Aligned_cols=18 Identities=11% Similarity=0.278 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~ 110 (955)
-+-++||+|||||..+-.
T Consensus 94 iigI~GpsGSGKSTl~~~ 111 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRV 111 (321)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999987643
No 427
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=40.00 E-value=22 Score=37.68 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.|.-+.+.||+|||||..+-+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~ 99 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARV 99 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 445677899999999987643
No 428
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=39.98 E-value=23 Score=36.09 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=22.5
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
-+++++..|+|||..+.-.+.... .|.+++++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 477899999999987654333322 566776664
No 429
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=39.79 E-value=19 Score=33.95 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
..|+-+.+.+|.|||||...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 56777889999999999854
No 430
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=39.71 E-value=12 Score=43.91 Aligned_cols=17 Identities=12% Similarity=0.341 Sum_probs=15.4
Q ss_pred cEEEEcCCCCchHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAE 109 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~ 109 (955)
++++.||+|+|||..+-
T Consensus 329 ~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CEEEEESSCCTHHHHHH
T ss_pred ceEEECCCchHHHHHHH
Confidence 89999999999998753
No 431
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=39.54 E-value=10 Score=36.38 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchHHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i 112 (955)
.+.+++++|||||......+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46789999999998765533
No 432
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=39.41 E-value=23 Score=35.67 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=23.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
.|.-+++.++.|||||..+.... ..+..+..++.+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~-~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY-HRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH-HHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH-HHHhcCCCceee
Confidence 56678899999999999865543 333324445443
No 433
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=39.34 E-value=13 Score=40.71 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=16.1
Q ss_pred cEEEEcCCCCchHHHHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAM 114 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~ 114 (955)
-.++.|+||+|||.+.. ||..
T Consensus 27 l~vi~G~NGaGKT~ile-AI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFE-AVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHHHH-HHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHH
Confidence 57889999999999854 4433
No 434
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=38.93 E-value=15 Score=37.37 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
..|+-+.+.+|.|||||...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 56788999999999999864
No 435
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=38.82 E-value=33 Score=34.94 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=24.7
Q ss_pred CcEEEEc-CCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 92 ESVLVSA-HTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 92 ~~vlv~a-pTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
+.++|++ .||+|||++...-+....++|.+|.|.=|
T Consensus 22 k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 22 HMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 3555544 59999999875544444466888888754
No 436
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=38.69 E-value=21 Score=38.62 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=21.9
Q ss_pred CCHHHHHHHHH--------HhcCCc--EEEEcCCCCchHHHH
Q 002183 77 LDPFQRVSVAC--------LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 77 l~~~Q~~ai~~--------l~~g~~--vlv~apTGsGKTl~~ 108 (955)
++.-|.+.+.. +.+|.+ ++..+.||||||...
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 44556655532 356655 667999999999864
No 437
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=38.67 E-value=20 Score=38.83 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=21.8
Q ss_pred CCHHHHHHHHH--------HhcCCc--EEEEcCCCCchHHHH
Q 002183 77 LDPFQRVSVAC--------LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 77 l~~~Q~~ai~~--------l~~g~~--vlv~apTGsGKTl~~ 108 (955)
++.-|.+.+.. +..|.+ ++..++||||||...
T Consensus 57 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 57 MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp TTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 44456665542 356655 677999999999864
No 438
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=38.54 E-value=21 Score=38.25 Aligned_cols=25 Identities=24% Similarity=0.196 Sum_probs=18.6
Q ss_pred HHHHHhcCCc--EEEEcCCCCchHHHH
Q 002183 84 SVACLERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 84 ai~~l~~g~~--vlv~apTGsGKTl~~ 108 (955)
.+..+.+|.+ ++..++||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 3444567765 667999999999864
No 439
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=38.32 E-value=12 Score=38.03 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=17.6
Q ss_pred hcCCcEEEEcCCCCchHHHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~ 110 (955)
..|.-+-+.+|.|||||.++-+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4556677899999999998654
No 440
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=38.24 E-value=21 Score=38.93 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=22.0
Q ss_pred CCHHHHHHHHH--------HhcCCc--EEEEcCCCCchHHHH
Q 002183 77 LDPFQRVSVAC--------LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 77 l~~~Q~~ai~~--------l~~g~~--vlv~apTGsGKTl~~ 108 (955)
++.-|.+.+.. +.+|-+ ++..++||||||...
T Consensus 78 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 78 WNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 45556665533 356655 667999999999874
No 441
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=38.17 E-value=21 Score=38.57 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=16.4
Q ss_pred HhcCCc--EEEEcCCCCchHHHH
Q 002183 88 LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 88 l~~g~~--vlv~apTGsGKTl~~ 108 (955)
+.+|.+ ++..++||||||...
T Consensus 73 ~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 73 AIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHcCCccceeeecCCCCCCCeEE
Confidence 356655 667999999999864
No 442
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=38.04 E-value=21 Score=38.68 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=16.3
Q ss_pred HhcCCc--EEEEcCCCCchHHHH
Q 002183 88 LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 88 l~~g~~--vlv~apTGsGKTl~~ 108 (955)
+.+|.+ ++..++||||||...
T Consensus 99 ~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 99 ALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHH
T ss_pred HhCCCceEEEEECCCCCCCceEe
Confidence 356765 567899999999874
No 443
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=37.88 E-value=61 Score=34.81 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=53.2
Q ss_pred cCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceE
Q 002183 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (955)
Q Consensus 118 ~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (955)
.+.++|+.++++.-+...++.+++....+..++|+.+. +...+|+|+|. .+..| ..+.++++|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G-idip~~~~V 315 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLARG-IDIPTVSMV 315 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSSS-CCCTTEEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhcC-CCcccCCEE
Confidence 45799999999999999999999987789999998752 34678999994 44444 346788888
Q ss_pred EEEcc
Q 002183 187 IFDEI 191 (955)
Q Consensus 187 IiDEa 191 (955)
|.-..
T Consensus 316 i~~~~ 320 (395)
T 3pey_A 316 VNYDL 320 (395)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 87443
No 444
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=37.80 E-value=50 Score=27.56 Aligned_cols=48 Identities=17% Similarity=0.083 Sum_probs=38.6
Q ss_pred CCccHHHHHHH-HhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHH
Q 002183 875 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRA 922 (955)
Q Consensus 875 ~~~~l~~~v~~-Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ellrq~~~ 922 (955)
+.+.--.|+.. +..|.|+.+|.+..++.++.|=+.+.|.-.-||+.-.
T Consensus 38 L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 44455566665 7999999999999999999999888888877776543
No 445
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=37.76 E-value=21 Score=38.69 Aligned_cols=32 Identities=25% Similarity=0.155 Sum_probs=21.9
Q ss_pred CCHHHHHHHH--------HHhcCCc--EEEEcCCCCchHHHH
Q 002183 77 LDPFQRVSVA--------CLERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 77 l~~~Q~~ai~--------~l~~g~~--vlv~apTGsGKTl~~ 108 (955)
++.-|.+.+. .+.+|.+ ++..++||||||...
T Consensus 82 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 82 ETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4444766553 3356665 677999999999874
No 446
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=37.73 E-value=1.2e+02 Score=26.41 Aligned_cols=67 Identities=4% Similarity=0.093 Sum_probs=48.5
Q ss_pred CCccHHHHHHH-HhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhhc
Q 002183 875 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLR 944 (955)
Q Consensus 875 ~~~~l~~~v~~-Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ellrq~~~aa~~iG~~~L~~k~~~a~~~ik 944 (955)
+.+.--.++.. +..|.|..+|.+..+++++.+=+.+.|.-.-|++.-... |..+...+.......|+
T Consensus 26 L~~~~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~---~~~~~~~~~~~~~~~~~ 93 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKL---ELYQKFEQRREIYDEMK 93 (113)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH---hHHhHHHHHHHHHHHHH
Confidence 44555566655 489999999999999999999999999888887765432 34555555555555553
No 447
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=37.45 E-value=32 Score=33.92 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=24.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE--ccChhhH
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT--SPLKALS 132 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l--~PtkaLa 132 (955)
.+++...|.|||.++..........| +|+++ =|...+.
T Consensus 4 ~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 4 TVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHH
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHH
Confidence 35578889999988765444444567 88774 3654443
No 448
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.35 E-value=24 Score=49.16 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=40.6
Q ss_pred hhhcCCCCCCHHHHHHH----HHHhcCCcEEEEcCCCCchHHHHHHHHHHHHhc--C-CeEEEEccChhhHHH
Q 002183 69 MAKTYSFELDPFQRVSV----ACLERNESVLVSAHTSAGKTAVAEYAIAMAFRD--K-QRVIYTSPLKALSNQ 134 (955)
Q Consensus 69 ~~~~~~f~l~~~Q~~ai----~~l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~--~-~~vl~l~PtkaLa~Q 134 (955)
.....++.+.+.+..=+ ..+...+.++++||||||||.++-.. ..++.. + ....++..-|++..+
T Consensus 880 ~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L-~~al~~l~~~~~~~~~iNPKait~~ 951 (3245)
T 3vkg_A 880 IAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVY-LEAIEQVDNIKSEAHVMDPKAITKD 951 (3245)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHH-HHHHTTTTTCEEEEEEECTTTSCHH
T ss_pred HHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHH-HHHHHHhhCCCceEEEECCCCCchh
Confidence 34567888877775443 22466778999999999999987543 223322 2 223444455676543
No 449
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=37.33 E-value=14 Score=38.81 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~ 110 (955)
-+.++|++|||||..+-.
T Consensus 33 ii~I~G~sGsGKSTla~~ 50 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQ 50 (290)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 466899999999987643
No 450
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=37.25 E-value=17 Score=35.61 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.0
Q ss_pred cEEEEcCCCCchHHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYAI 112 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i 112 (955)
.+.+.+++|||||.++-+..
T Consensus 14 iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46689999999999876543
No 451
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=37.22 E-value=38 Score=34.29 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=25.5
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCe-EEEE-ccC
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR-VIYT-SPL 128 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~-vl~l-~Pt 128 (955)
.|.-+++.++.|||||..+....-..-..+.. ++++ -|.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~ 66 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPG 66 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCC
Confidence 56778899999999999876544333334555 4433 354
No 452
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=37.19 E-value=1.2e+02 Score=34.57 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=52.0
Q ss_pred hcCCeEEEEccChhhHHHHHHHHHHhcC---CeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCc
Q 002183 117 RDKQRVIYTSPLKALSNQKYRELHQEFK---DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKE 182 (955)
Q Consensus 117 ~~~~~vl~l~PtkaLa~Q~~~~l~~~~~---~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~ 182 (955)
..+.++||.++++.-+...++.+.+.++ .+..++|+.+. +...+|+|+|. .+.+|- .+.+
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~Gi-Dip~ 410 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARGM-DFPN 410 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSSC-CCTT
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hhhcCC-Cccc
Confidence 3477999999999999999999998854 67888998753 24678999994 444443 4677
Q ss_pred cceEEEEc
Q 002183 183 VAWVIFDE 190 (955)
Q Consensus 183 l~~vIiDE 190 (955)
+++||.-.
T Consensus 411 v~~VI~~~ 418 (563)
T 3i5x_A 411 VHEVLQIG 418 (563)
T ss_dssp CCEEEEES
T ss_pred CCEEEEEC
Confidence 88888544
No 453
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.15 E-value=24 Score=42.66 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
...++++.+|+|+|||.++..
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 456899999999999998754
No 454
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=37.15 E-value=21 Score=35.61 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=15.9
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
.+++.++.|||||.++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999987654
No 455
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=37.10 E-value=22 Score=38.48 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=16.9
Q ss_pred HHhcCCc--EEEEcCCCCchHHHH
Q 002183 87 CLERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 87 ~l~~g~~--vlv~apTGsGKTl~~ 108 (955)
.+.+|.+ ++..++||||||...
T Consensus 87 ~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 87 NAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHhCCceeEEEeeCCCCCCCceEE
Confidence 3466765 567899999999874
No 456
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=37.05 E-value=28 Score=35.09 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=22.3
Q ss_pred HhcCCcEEEEcCCCCchHHHHHHHHHHHHhc----CCeEEEE
Q 002183 88 LERNESVLVSAHTSAGKTAVAEYAIAMAFRD----KQRVIYT 125 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~~i~~~l~~----~~~vl~l 125 (955)
+..|.-+++.++.|||||.......-..-.. |..++++
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 3567778899999999999876543322223 5566544
No 457
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=37.05 E-value=16 Score=38.12 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
..|+-+.+.+|.|||||...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 56888999999999999864
No 458
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=36.98 E-value=24 Score=38.95 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=22.4
Q ss_pred CCHHHHHHHHH--------HhcCCc--EEEEcCCCCchHHHH
Q 002183 77 LDPFQRVSVAC--------LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 77 l~~~Q~~ai~~--------l~~g~~--vlv~apTGsGKTl~~ 108 (955)
++.-|.+.+.. +..|-+ ++..+.||||||...
T Consensus 131 ~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 131 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred cCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 45557666543 356655 667999999999874
No 459
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=36.77 E-value=18 Score=49.79 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=19.9
Q ss_pred HhcCCcEEEEcCCCCchHHHHHH
Q 002183 88 LERNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 88 l~~g~~vlv~apTGsGKTl~~~~ 110 (955)
+..++.++++||||+|||..+.-
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la~~ 1286 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIMNN 1286 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHHHH
Confidence 47789999999999999997643
No 460
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=36.75 E-value=15 Score=36.39 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 002183 92 ESVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~ 111 (955)
..+.+.++.|||||.++-..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45788999999999986553
No 461
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=36.73 E-value=27 Score=37.47 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=25.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 92 ESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 92 ~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
.-+++++.-|.|||.++.-........|.+|+++.
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45677999999999987654444445677887775
No 462
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=36.71 E-value=21 Score=35.88 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=22.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
+.|++.-|.|||.++.-........|.+|+++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45688999999998765444333557777776
No 463
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=36.70 E-value=17 Score=36.21 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
..|+-+.+.+|.|||||...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 56888999999999999864
No 464
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=36.61 E-value=17 Score=37.22 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
..|+-+.+.+|.|||||...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 56888999999999999864
No 465
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=36.54 E-value=40 Score=33.48 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=24.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCC-eEEEE-ccCh
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ-RVIYT-SPLK 129 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~-~vl~l-~Ptk 129 (955)
+|.-+++.++.|||||..........-..+. .++++ -|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~ 43 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG 43 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCC
Confidence 4666788999999999987654333323443 44433 3543
No 466
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=36.54 E-value=23 Score=38.50 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=16.3
Q ss_pred HhcCCc--EEEEcCCCCchHHHH
Q 002183 88 LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 88 l~~g~~--vlv~apTGsGKTl~~ 108 (955)
+..|.+ ++..+.||||||...
T Consensus 85 ~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 85 AFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHH
T ss_pred HhcCCeeEEEEeCCCCCCCceEe
Confidence 466765 667999999999764
No 467
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=36.43 E-value=17 Score=37.53 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
..|+-+.+.+|.|||||...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 56888999999999999864
No 468
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=36.41 E-value=96 Score=34.17 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=54.6
Q ss_pred CCCchHHHHHHHHHHHH--hcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEec--------cccc-----------CCC
Q 002183 100 TSAGKTAVAEYAIAMAF--RDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTG--------DVTL-----------SPN 158 (955)
Q Consensus 100 TGsGKTl~~~~~i~~~l--~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tG--------d~~~-----------~~~ 158 (955)
..++|.....-.+...+ ..+.++||.++++.-+...++.+....-.+..++| +.+. +..
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~ 419 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC
Confidence 45566544333333333 45889999999999999999999988668888998 4432 135
Q ss_pred CCEEEEeHHHHHHHHhcCCccCCccceEEE
Q 002183 159 ASCLVMTTEILRGMLYRGSEVLKEVAWVIF 188 (955)
Q Consensus 159 ~~IlV~Tpe~L~~~l~~~~~~l~~l~~vIi 188 (955)
..|+|+|. .+..| ..+..+++||+
T Consensus 420 ~~vLv~T~-----~~~~G-ldl~~~~~Vi~ 443 (494)
T 1wp9_A 420 FNVLVATS-----VGEEG-LDVPEVDLVVF 443 (494)
T ss_dssp CSEEEECG-----GGGGG-GGSTTCCEEEE
T ss_pred ceEEEECC-----ccccC-CCchhCCEEEE
Confidence 67888883 23333 33566777774
No 469
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=36.11 E-value=17 Score=36.61 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
..|+-+.+.+|.|||||...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 56888999999999999864
No 470
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=35.99 E-value=32 Score=36.94 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=23.6
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 89 ERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
..|..+.+.+|+|+|||...-..+-.....++++.+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 35667889999999999865433222222345555443
No 471
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=35.91 E-value=92 Score=35.16 Aligned_cols=72 Identities=11% Similarity=0.188 Sum_probs=50.9
Q ss_pred HhcCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccc
Q 002183 116 FRDKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVA 184 (955)
Q Consensus 116 l~~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~ 184 (955)
..++...+++.....-+....+.+.+....+..++|+.+. +...+|+|+|+..+- .| ..+.+++
T Consensus 344 ~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~----~G-iDip~v~ 418 (510)
T 2oca_A 344 AQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS----TG-ISVKNLH 418 (510)
T ss_dssp HTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH----HS-CCCCSEE
T ss_pred HhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh----cc-cccccCc
Confidence 3445555555555777777888888877789999998752 346789999977664 33 3467788
Q ss_pred eEEEEccc
Q 002183 185 WVIFDEIH 192 (955)
Q Consensus 185 ~vIiDEaH 192 (955)
+||+....
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 88876554
No 472
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=35.80 E-value=31 Score=37.34 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=24.8
Q ss_pred cEEEEcCCCCchHHHHHHHHHHHH--hcCCeEEEEcc
Q 002183 93 SVLVSAHTSAGKTAVAEYAIAMAF--RDKQRVIYTSP 127 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~i~~~l--~~~~~vl~l~P 127 (955)
-+++++..|.|||.++.-...... ..|.+|+++..
T Consensus 20 i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 20 WIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 466789999999987754333333 56888888764
No 473
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=35.76 E-value=1.1e+02 Score=32.32 Aligned_cols=71 Identities=8% Similarity=0.018 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCccCCccceEEEEcccc-CCCCCChHHHHHHHHhCCCcceEEEeccccCChHHHHHHHhhhcC
Q 002183 166 TEILRGMLYRGSEVLKEVAWVIFDEIHY-MKDRERGVVWEESIIFLPPAIKMVFLSATMSNATQFAEWICHLHK 238 (955)
Q Consensus 166 pe~L~~~l~~~~~~l~~l~~vIiDEaH~-l~d~~rg~~~~~ii~~l~~~~~~v~lSAT~~n~~~~~~~l~~~~~ 238 (955)
...+.+..... ..+.+-++||+||+|. +... -...+...+...|++..+|+.+.++........|+..+..
T Consensus 61 ~~~l~~~~~~~-plf~~~kvvii~~~~~kl~~~-~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~s 132 (343)
T 1jr3_D 61 WNAIFSLCQAM-SLFASRQTLLLLLPENGPNAA-INEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALAN 132 (343)
T ss_dssp HHHHHHHHHHH-HHCCSCEEEEEECCSSCCCTT-HHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTT
T ss_pred HHHHHHHhcCc-CCccCCeEEEEECCCCCCChH-HHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHh
Confidence 34454443322 2356778999999998 7643 1222344444445566666666555332222356555443
No 474
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=35.52 E-value=32 Score=36.96 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=22.8
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 90 RNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
++..+.+.+++|+|||..+..........+.++.++.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4556888999999999865433222223455554443
No 475
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=35.48 E-value=58 Score=34.61 Aligned_cols=65 Identities=17% Similarity=0.154 Sum_probs=49.8
Q ss_pred cCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceE
Q 002183 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (955)
Q Consensus 118 ~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (955)
.+.++||.+|++.-+...++.+++....+..++|+.+. +...+|+|+|. .+..|- .+.++++|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~Gi-d~~~~~~V 310 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRGI-DVNDLNCV 310 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHHC-CCSCCSEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcCC-CcccCCEE
Confidence 46789999999999999999999887789999998652 34678999984 233332 35677888
Q ss_pred EE
Q 002183 187 IF 188 (955)
Q Consensus 187 Ii 188 (955)
|.
T Consensus 311 i~ 312 (367)
T 1hv8_A 311 IN 312 (367)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 476
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=35.46 E-value=24 Score=38.63 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=22.4
Q ss_pred CCHHHHHHHHH--------HhcCCc--EEEEcCCCCchHHHH
Q 002183 77 LDPFQRVSVAC--------LERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 77 l~~~Q~~ai~~--------l~~g~~--vlv~apTGsGKTl~~ 108 (955)
++.-|.+.+.. +.+|.+ ++..+.||||||...
T Consensus 111 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred cCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 45557666543 356655 677999999999874
No 477
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=35.38 E-value=18 Score=36.36 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=17.1
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
..|+-+.+.+|.|||||...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 56788899999999999853
No 478
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=35.36 E-value=35 Score=35.86 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=21.9
Q ss_pred CcEEEEcC-CCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 92 ESVLVSAH-TSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 92 ~~vlv~ap-TGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
+.++|.++ .|.|||.++.-........|.+|+++
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 44556554 69999987654333333467888877
No 479
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=35.22 E-value=22 Score=38.75 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=17.8
Q ss_pred HHHHhcCCc--EEEEcCCCCchHHHH
Q 002183 85 VACLERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 85 i~~l~~g~~--vlv~apTGsGKTl~~ 108 (955)
+..+..|.+ ++..++||||||...
T Consensus 72 v~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 72 VQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHhhhcCCceEEEEECCCCCCCeEee
Confidence 344567765 566899999999874
No 480
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=35.15 E-value=18 Score=37.46 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
..|+-+.+.+|.|||||...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 56788999999999999864
No 481
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=35.13 E-value=15 Score=39.00 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.|.-+.+.||+|||||..+-.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~ 109 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARV 109 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHH
Confidence 455677899999999987643
No 482
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=35.07 E-value=35 Score=36.82 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHHHhcCCeEEEEc
Q 002183 91 NESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTS 126 (955)
Q Consensus 91 g~~vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~ 126 (955)
+..+.+.+++|+|||......+-.....+.++.|+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 345778999999999876544333333455555554
No 483
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=35.02 E-value=21 Score=34.42 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 002183 90 RNESVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 90 ~g~~vlv~apTGsGKTl~~~~ 110 (955)
.|.-+++.++.|+|||..+..
T Consensus 15 ~G~gvli~G~SGaGKStlal~ 35 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLA 35 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHH
Confidence 466799999999999976643
No 484
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=34.87 E-value=16 Score=38.27 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~ 110 (955)
-+++.+++|||||.++-.
T Consensus 4 ~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999997654
No 485
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=34.85 E-value=19 Score=36.83 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=15.1
Q ss_pred cEEEEcCCCCchHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEY 110 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~ 110 (955)
.+.+.++.|||||.++-.
T Consensus 24 iI~I~G~~GSGKST~a~~ 41 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAK 41 (252)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477899999999998753
No 486
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.76 E-value=26 Score=38.82 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=18.1
Q ss_pred HHHHhcCCc--EEEEcCCCCchHHHH
Q 002183 85 VACLERNES--VLVSAHTSAGKTAVA 108 (955)
Q Consensus 85 i~~l~~g~~--vlv~apTGsGKTl~~ 108 (955)
+..+..|.+ ++..++||||||...
T Consensus 131 v~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 131 IQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHCCCceEEEEecCCCCCCeeEe
Confidence 444567766 567899999999874
No 487
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=34.71 E-value=16 Score=38.81 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=17.7
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
..|+.+.+.+|+|||||...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHH
Confidence 56889999999999999864
No 488
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=34.57 E-value=32 Score=35.56 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=21.5
Q ss_pred CcEEEEc-CCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 92 ESVLVSA-HTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 92 ~~vlv~a-pTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
+.++|.+ ..|.|||.++.-........|.+|+++
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 3455554 478999987654333333567788776
No 489
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=34.50 E-value=42 Score=38.03 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=28.1
Q ss_pred HHHHHHHH---hcCCcEEEEcCCCCchHHHHHHHHHHHH
Q 002183 81 QRVSVACL---ERNESVLVSAHTSAGKTAVAEYAIAMAF 116 (955)
Q Consensus 81 Q~~ai~~l---~~g~~vlv~apTGsGKTl~~~~~i~~~l 116 (955)
=.++|+.+ -+|+...+.|+.|+|||..++-.|.+..
T Consensus 149 GiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~ 187 (510)
T 2ck3_A 149 GIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK 187 (510)
T ss_dssp SCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred cceeeccccccccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 34778876 6799999999999999998755554443
No 490
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=34.44 E-value=59 Score=35.00 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=51.3
Q ss_pred cCCeEEEEccChhhHHHHHHHHHHhcCCeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCccceE
Q 002183 118 DKQRVIYTSPLKALSNQKYRELHQEFKDVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKEVAWV 186 (955)
Q Consensus 118 ~~~~vl~l~PtkaLa~Q~~~~l~~~~~~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~~v 186 (955)
.+.++|+.++++.-+...++.+.+....+..++|+.+. +....|+|+|. .+..| ..+.++++|
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-idi~~~~~V 322 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGRG-MDIERVNIA 322 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCSSC-BCCTTEEEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhhcC-CCcccCCEE
Confidence 56799999999999999999999887788889998652 34678999993 33344 346778888
Q ss_pred EEEc
Q 002183 187 IFDE 190 (955)
Q Consensus 187 IiDE 190 (955)
|.-.
T Consensus 323 i~~~ 326 (391)
T 1xti_A 323 FNYD 326 (391)
T ss_dssp EESS
T ss_pred EEeC
Confidence 7633
No 491
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=34.43 E-value=19 Score=36.57 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=17.3
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
..|+-+.+.+|.|||||...
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 56788999999999999864
No 492
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=34.40 E-value=19 Score=37.03 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=17.4
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
..|+-+.+.+|.|||||...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHH
Confidence 56788999999999999864
No 493
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=34.37 E-value=39 Score=34.57 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=22.9
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhcCCeEEEEcc
Q 002183 95 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSP 127 (955)
Q Consensus 95 lv~apTGsGKTl~~~~~i~~~l~~~~~vl~l~P 127 (955)
|....||+|||++...-+....++|.+|.|.=|
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKP 63 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAGIDVAVCKP 63 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence 345568999999875544444466888888754
No 494
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=34.24 E-value=16 Score=37.15 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 002183 89 ERNESVLVSAHTSAGKTAVA 108 (955)
Q Consensus 89 ~~g~~vlv~apTGsGKTl~~ 108 (955)
..|+.+.+.+|.|||||...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 46778999999999999864
No 495
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=33.95 E-value=38 Score=35.17 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=21.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
+.|++..|.|||.++.-........|.+|+++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 44578999999987765443333457788765
No 496
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=33.73 E-value=34 Score=34.25 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=21.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhc-CCeEEEE
Q 002183 95 LVSAHTSAGKTAVAEYAIAMAFRD-KQRVIYT 125 (955)
Q Consensus 95 lv~apTGsGKTl~~~~~i~~~l~~-~~~vl~l 125 (955)
+.++..|.|||.++.......... |.+|+++
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 446778999999875443333344 7888776
No 497
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=33.72 E-value=1.3e+02 Score=34.59 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=52.3
Q ss_pred hcCCeEEEEccChhhHHHHHHHHHHhcC---CeeEEeccccc-----------CCCCCEEEEeHHHHHHHHhcCCccCCc
Q 002183 117 RDKQRVIYTSPLKALSNQKYRELHQEFK---DVGLMTGDVTL-----------SPNASCLVMTTEILRGMLYRGSEVLKE 182 (955)
Q Consensus 117 ~~~~~vl~l~PtkaLa~Q~~~~l~~~~~---~vg~~tGd~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~ 182 (955)
..+.++||.+|++.-+...++.+.+.++ .+..++|+.+. +...+|+|+|. .+.+|- .+.+
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~Gi-Dip~ 359 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARGM-DFPN 359 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSSC-CCTT
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhcCC-Cccc
Confidence 3467999999999999999999998854 67888998753 24678999984 444443 4677
Q ss_pred cceEEEEcc
Q 002183 183 VAWVIFDEI 191 (955)
Q Consensus 183 l~~vIiDEa 191 (955)
+++||.-..
T Consensus 360 v~~VI~~~~ 368 (579)
T 3sqw_A 360 VHEVLQIGV 368 (579)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEcCC
Confidence 888886543
No 498
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=33.68 E-value=18 Score=35.25 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 002183 93 SVLVSAHTSAGKTAVAEYA 111 (955)
Q Consensus 93 ~vlv~apTGsGKTl~~~~~ 111 (955)
.+.+.++.|||||.++-..
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5778999999999987543
No 499
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=33.61 E-value=39 Score=34.56 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=21.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCeEEEE
Q 002183 94 VLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYT 125 (955)
Q Consensus 94 vlv~apTGsGKTl~~~~~i~~~l~~~~~vl~l 125 (955)
+.|++.-|.|||.++..........|.+|+++
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 44578899999987754433333567788775
No 500
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=33.60 E-value=2.1e+02 Score=25.00 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=38.6
Q ss_pred CCccHHHHHHH-HhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHH
Q 002183 875 VRPFLMDVIYC-WSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLR 921 (955)
Q Consensus 875 ~~~~l~~~v~~-Wa~G~~f~~i~~~t~~~EG~ivR~~rRl~ellrq~~ 921 (955)
+.+.--.++.. +..|.|..+|.+..+++++.+=+.+.|.-.-|++.-
T Consensus 23 L~~~~r~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp SCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 55555566655 589999999999999999999999998887777654
Done!