Query 002185
Match_columns 955
No_of_seqs 146 out of 247
Neff 2.9
Searched_HMMs 46136
Date Thu Mar 28 18:27:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01102 Glycophorin_A: Glycop 97.7 3.7E-05 8E-10 74.2 3.9 38 872-909 58-95 (122)
2 PTZ00382 Variant-specific surf 97.3 7.8E-05 1.7E-09 69.0 1.2 35 871-905 59-93 (96)
3 PF03302 VSP: Giardia variant- 96.2 0.0022 4.7E-08 71.6 2.1 36 871-906 360-395 (397)
4 PF05808 Podoplanin: Podoplani 96.1 0.0016 3.4E-08 65.9 0.0 40 871-910 122-161 (162)
5 PF01034 Syndecan: Syndecan do 95.2 0.0053 1.2E-07 54.2 0.1 32 879-910 10-41 (64)
6 PF05454 DAG1: Dystroglycan (D 94.9 0.0069 1.5E-07 65.9 0.0 92 735-829 3-102 (290)
7 PF12877 DUF3827: Domain of un 94.8 0.13 2.8E-06 61.2 9.8 47 767-813 191-239 (684)
8 PF04478 Mid2: Mid2 like cell 93.8 0.018 4E-07 58.0 0.2 18 875-892 46-63 (154)
9 PF01299 Lamp: Lysosome-associ 92.0 0.074 1.6E-06 57.2 1.6 32 878-909 270-301 (306)
10 PF07213 DAP10: DAP10 membrane 91.9 0.11 2.3E-06 47.9 2.3 38 873-911 29-66 (79)
11 PF13908 Shisa: Wnt and FGF in 91.3 0.13 2.8E-06 51.4 2.3 16 875-890 76-91 (179)
12 PF15102 TMEM154: TMEM154 prot 91.3 0.13 2.8E-06 51.8 2.3 37 875-911 53-89 (146)
13 PF02439 Adeno_E3_CR2: Adenovi 90.7 0.33 7.1E-06 39.6 3.6 29 881-909 6-34 (38)
14 PF12273 RCR: Chitin synthesis 90.2 0.37 8E-06 46.3 4.2 13 916-928 33-45 (130)
15 PF12768 Rax2: Cortical protei 90.1 0.31 6.6E-06 53.0 4.1 31 872-902 221-251 (281)
16 PF08693 SKG6: Transmembrane a 89.0 0.14 3E-06 41.9 0.4 8 900-907 32-39 (40)
17 PF04689 S1FA: DNA binding pro 88.7 0.77 1.7E-05 41.3 4.7 35 871-906 6-40 (69)
18 PF02480 Herpes_gE: Alphaherpe 88.4 0.14 3E-06 58.6 0.0 38 875-912 349-386 (439)
19 PF10873 DUF2668: Protein of u 87.3 0.59 1.3E-05 47.4 3.6 27 873-899 56-82 (155)
20 PF02009 Rifin_STEVOR: Rifin/s 84.5 0.71 1.5E-05 50.9 2.8 23 888-910 264-286 (299)
21 PF12301 CD99L2: CD99 antigen 82.9 1.3 2.9E-05 45.5 3.8 35 871-907 108-142 (169)
22 PF13908 Shisa: Wnt and FGF in 82.8 0.97 2.1E-05 45.3 2.8 26 874-899 71-96 (179)
23 PF01034 Syndecan: Syndecan do 82.4 0.41 8.9E-06 42.7 -0.0 43 872-915 7-49 (64)
24 PHA03265 envelope glycoprotein 82.2 0.78 1.7E-05 51.9 2.0 32 876-907 345-376 (402)
25 PF06024 DUF912: Nucleopolyhed 81.3 0.48 1E-05 44.4 0.1 35 876-910 60-94 (101)
26 PF14575 EphA2_TM: Ephrin type 80.5 0.64 1.4E-05 41.8 0.5 18 880-897 2-19 (75)
27 PF08374 Protocadherin: Protoc 80.4 1.8 4E-05 46.3 3.9 19 878-896 38-56 (221)
28 PF06697 DUF1191: Protein of u 79.0 1.2 2.5E-05 49.0 2.0 26 872-897 207-233 (278)
29 PF06365 CD34_antigen: CD34/Po 77.5 3.1 6.7E-05 44.0 4.5 29 879-907 101-129 (202)
30 PF05827 ATP-synt_S1: Vacuolar 75.8 13 0.00028 39.6 8.7 100 729-829 67-176 (282)
31 PF05393 Hum_adeno_E3A: Human 71.9 5.3 0.00011 38.0 4.0 34 880-913 32-65 (94)
32 PTZ00046 rifin; Provisional 71.7 3.4 7.3E-05 47.0 3.3 21 890-910 325-345 (358)
33 TIGR01477 RIFIN variant surfac 71.1 3.5 7.7E-05 46.7 3.3 29 882-910 311-340 (353)
34 PF03229 Alpha_GJ: Alphavirus 69.3 6.3 0.00014 39.1 4.1 33 875-907 80-112 (126)
35 PHA03283 envelope glycoprotein 67.9 3.7 8.1E-05 48.6 2.7 44 878-922 399-442 (542)
36 TIGR01478 STEVOR variant surfa 67.7 4.9 0.00011 44.7 3.4 6 727-732 44-49 (295)
37 PTZ00370 STEVOR; Provisional 66.1 5.5 0.00012 44.3 3.4 15 889-903 263-277 (296)
38 PLN03150 hypothetical protein; 64.0 5.3 0.00012 47.3 3.0 33 874-907 540-572 (623)
39 PF01102 Glycophorin_A: Glycop 63.5 7.8 0.00017 38.3 3.5 41 873-913 55-96 (122)
40 PF14575 EphA2_TM: Ephrin type 62.8 6.9 0.00015 35.3 2.8 25 883-907 2-26 (75)
41 PRK08455 fliL flagellar basal 62.6 9.7 0.00021 39.3 4.2 28 880-907 19-46 (182)
42 PF05568 ASFV_J13L: African sw 62.2 6.6 0.00014 40.4 2.9 28 881-908 32-59 (189)
43 PF12877 DUF3827: Domain of un 61.5 9.7 0.00021 46.3 4.5 70 872-947 264-334 (684)
44 PF15050 SCIMP: SCIMP protein 60.5 9.2 0.0002 38.3 3.4 38 880-918 9-46 (133)
45 KOG4818 Lysosomal-associated m 60.3 8.6 0.00019 43.9 3.6 31 876-906 324-354 (362)
46 PF14610 DUF4448: Protein of u 60.1 4.3 9.3E-05 41.3 1.2 25 877-901 156-180 (189)
47 PF14828 Amnionless: Amnionles 59.8 42 0.00091 39.1 9.0 20 879-898 339-358 (437)
48 PF12259 DUF3609: Protein of u 59.7 6.4 0.00014 44.6 2.5 29 880-908 299-327 (361)
49 KOG0196 Tyrosine kinase, EPH ( 59.3 15 0.00033 46.0 5.6 13 780-792 472-484 (996)
50 PF12768 Rax2: Cortical protei 59.1 9 0.00019 42.0 3.4 38 872-910 225-262 (281)
51 PF05084 GRA6: Granule antigen 57.9 12 0.00027 39.1 4.0 29 884-913 153-181 (215)
52 PF15345 TMEM51: Transmembrane 56.8 7.9 0.00017 42.0 2.5 26 880-907 60-85 (233)
53 PF12191 stn_TNFRSF12A: Tumour 56.8 3.8 8.3E-05 40.9 0.2 13 884-896 84-96 (129)
54 PF15099 PIRT: Phosphoinositid 55.2 7 0.00015 39.2 1.7 35 878-912 80-115 (129)
55 PF04478 Mid2: Mid2 like cell 53.6 3.1 6.7E-05 42.6 -1.0 23 871-894 46-68 (154)
56 PF15330 SIT: SHP2-interacting 53.1 15 0.00033 35.4 3.5 28 885-912 4-31 (107)
57 PF15069 FAM163: FAM163 family 53.1 13 0.00029 37.8 3.3 13 877-889 5-17 (143)
58 PF12273 RCR: Chitin synthesis 52.4 10 0.00022 36.6 2.3 13 896-908 16-28 (130)
59 PF10577 UPF0560: Uncharacteri 49.6 16 0.00035 45.3 3.8 29 876-905 271-299 (807)
60 PF05545 FixQ: Cbb3-type cytoc 49.1 17 0.00038 30.0 2.8 21 885-905 13-33 (49)
61 PF15176 LRR19-TM: Leucine-ric 46.7 25 0.00054 34.3 3.8 27 872-898 12-38 (102)
62 PF15065 NCU-G1: Lysosomal tra 45.9 6.3 0.00014 44.7 -0.3 36 872-907 312-348 (350)
63 PF13584 BatD: Oxygen toleranc 44.4 24 0.00053 40.1 4.0 18 726-743 283-300 (484)
64 PHA03286 envelope glycoprotein 43.5 18 0.00038 42.7 2.8 50 876-927 389-438 (492)
65 PF05283 MGC-24: Multi-glycosy 43.5 20 0.00042 37.8 2.9 31 872-907 155-185 (186)
66 PF06809 NPDC1: Neural prolife 42.0 28 0.00061 39.6 3.9 33 876-909 195-228 (341)
67 KOG3637 Vitronectin receptor, 41.7 27 0.0006 44.5 4.2 29 874-902 975-1003(1030)
68 PF11770 GAPT: GRB2-binding ad 40.4 11 0.00025 38.7 0.6 26 882-908 11-36 (158)
69 PF14991 MLANA: Protein melan- 40.3 8.6 0.00019 38.0 -0.3 24 878-901 24-47 (118)
70 PRK05696 fliL flagellar basal 39.7 33 0.00072 34.7 3.7 25 877-902 18-42 (170)
71 PF10661 EssA: WXG100 protein 39.6 30 0.00064 35.0 3.3 23 883-905 120-142 (145)
72 PTZ00382 Variant-specific surf 39.2 8.6 0.00019 36.2 -0.4 38 873-910 57-95 (96)
73 PF00558 Vpu: Vpu protein; In 38.7 34 0.00073 32.1 3.3 26 879-906 5-30 (81)
74 KOG3514 Neurexin III-alpha [Si 38.1 23 0.0005 45.4 2.8 30 880-909 1514-1543(1591)
75 PF02439 Adeno_E3_CR2: Adenovi 36.2 35 0.00077 28.2 2.6 30 878-908 7-36 (38)
76 PF04971 Lysis_S: Lysis protei 36.1 30 0.00064 31.7 2.4 22 876-897 31-52 (68)
77 PTZ00214 high cysteine membran 35.6 3 6.6E-05 51.4 -5.0 27 871-897 771-797 (800)
78 PHA03281 envelope glycoprotein 35.4 46 0.001 40.3 4.5 29 874-902 549-578 (642)
79 KOG3054 Uncharacterized conser 34.9 39 0.00085 37.5 3.6 24 886-909 6-29 (299)
80 PHA03291 envelope glycoprotein 33.7 56 0.0012 37.9 4.6 73 871-949 279-352 (401)
81 PRK06287 cobalt transport prot 33.5 47 0.001 32.1 3.5 13 886-898 82-94 (107)
82 PF05083 LST1: LST-1 protein; 32.0 36 0.00077 31.5 2.3 23 886-908 2-24 (74)
83 PF02158 Neuregulin: Neureguli 31.9 15 0.00033 42.4 0.0 18 879-896 11-28 (404)
84 PF07178 TraL: TraL protein; 31.9 40 0.00087 31.3 2.7 28 879-906 30-57 (95)
85 PF02480 Herpes_gE: Alphaherpe 31.4 16 0.00034 42.5 0.0 49 873-922 351-399 (439)
86 PF05337 CSF-1: Macrophage col 31.2 16 0.00035 40.7 0.0 30 884-915 231-260 (285)
87 PRK00523 hypothetical protein; 31.1 55 0.0012 30.3 3.3 25 881-905 4-28 (72)
88 PRK07021 fliL flagellar basal 30.7 52 0.0011 33.1 3.5 28 877-905 15-42 (162)
89 PF12669 P12: Virus attachment 30.7 53 0.0011 28.7 3.0 9 900-908 18-26 (58)
90 PF07253 Gypsy: Gypsy protein; 30.1 49 0.0011 39.3 3.6 37 883-919 420-456 (472)
91 PF02529 PetG: Cytochrome B6-F 29.5 69 0.0015 26.5 3.2 15 879-893 5-19 (37)
92 PF05478 Prominin: Prominin; 28.4 33 0.00072 42.3 2.0 34 875-908 89-122 (806)
93 PF08374 Protocadherin: Protoc 27.5 23 0.0005 38.3 0.4 14 880-893 36-49 (221)
94 PF03302 VSP: Giardia variant- 27.3 26 0.00057 40.0 0.8 36 875-910 360-396 (397)
95 PLN00113 leucine-rich repeat r 27.2 62 0.0013 39.5 3.9 12 878-889 629-640 (968)
96 PF05568 ASFV_J13L: African sw 27.1 50 0.0011 34.3 2.6 28 885-912 32-59 (189)
97 PRK14748 kdpF potassium-transp 26.4 44 0.00096 26.3 1.6 12 892-903 13-24 (29)
98 PRK06531 yajC preprotein trans 26.3 20 0.00043 35.1 -0.3 25 890-914 8-32 (113)
99 PHA02669 hypothetical protein; 26.2 36 0.00079 35.8 1.5 11 938-948 46-56 (210)
100 KOG3653 Transforming growth fa 26.1 1.3E+02 0.0027 36.4 5.9 62 881-947 157-222 (534)
101 PF05393 Hum_adeno_E3A: Human 26.0 87 0.0019 30.2 3.8 35 873-908 29-63 (94)
102 PF05961 Chordopox_A13L: Chord 25.9 96 0.0021 28.6 3.9 12 934-945 55-66 (68)
103 PRK13707 conjugal transfer pil 25.7 51 0.0011 31.6 2.3 29 880-908 37-65 (101)
104 PF07204 Orthoreo_P10: Orthore 25.5 37 0.00079 32.9 1.3 13 886-898 49-61 (98)
105 PF14986 DUF4514: Domain of un 25.4 77 0.0017 28.3 3.1 28 878-907 22-49 (61)
106 KOG1094 Discoidin domain recep 24.8 56 0.0012 40.3 2.8 16 735-750 194-209 (807)
107 PF14654 Epiglycanin_C: Mucin, 24.7 93 0.002 30.5 3.8 31 872-902 12-42 (106)
108 COG4736 CcoQ Cbb3-type cytochr 24.6 71 0.0015 28.6 2.8 25 885-910 13-37 (60)
109 COG4980 GvpP Gas vesicle prote 24.6 40 0.00087 33.4 1.4 19 876-894 4-22 (115)
110 PRK05886 yajC preprotein trans 24.1 50 0.0011 32.3 1.9 16 890-905 9-24 (109)
111 PF06040 Adeno_E3: Adenovirus 24.1 30 0.00066 34.5 0.5 15 878-892 89-103 (127)
112 COG2181 NarI Nitrate reductase 23.8 68 0.0015 35.0 3.0 25 880-904 87-111 (228)
113 KOG3637 Vitronectin receptor, 23.2 63 0.0014 41.5 3.1 27 878-905 976-1002(1030)
114 PRK01658 holin-like protein; V 22.9 60 0.0013 32.0 2.2 31 878-908 89-119 (122)
115 KOG1025 Epidermal growth facto 22.9 49 0.0011 42.2 2.0 27 879-905 629-655 (1177)
116 KOG3540 Beta amyloid precursor 22.8 56 0.0012 39.2 2.3 33 873-907 543-575 (615)
117 PLN00113 leucine-rich repeat r 22.7 84 0.0018 38.4 3.9 31 877-907 625-655 (968)
118 PF04156 IncA: IncA protein; 22.5 57 0.0012 32.7 2.1 17 891-907 49-65 (191)
119 PF03988 DUF347: Repeat of Unk 22.5 98 0.0021 26.5 3.2 18 881-898 27-44 (55)
120 PF11446 DUF2897: Protein of u 22.4 48 0.0011 29.0 1.3 17 876-892 4-20 (55)
121 TIGR01495 ETRAMP Plasmodium ri 22.3 72 0.0016 30.0 2.5 21 878-898 52-72 (85)
122 PF02699 YajC: Preprotein tran 22.0 55 0.0012 29.9 1.7 20 887-906 4-23 (82)
123 PRK14750 kdpF potassium-transp 21.8 57 0.0012 25.7 1.4 12 891-902 12-23 (29)
124 PF05770 Ins134_P3_kin: Inosit 21.8 2E+02 0.0042 32.5 6.1 51 748-799 248-298 (307)
125 PF04277 OAD_gamma: Oxaloaceta 21.8 83 0.0018 27.7 2.7 21 882-902 9-29 (79)
126 COG3889 Predicted solute bindi 21.7 72 0.0016 40.1 3.0 24 882-906 848-871 (872)
127 PF13706 PepSY_TM_3: PepSY-ass 21.3 86 0.0019 25.0 2.4 23 879-901 9-31 (37)
128 PF12669 P12: Virus attachment 21.0 67 0.0014 28.1 1.9 8 903-910 18-25 (58)
129 PF06305 DUF1049: Protein of u 20.8 68 0.0015 27.3 1.9 10 875-884 18-27 (68)
130 PF13268 DUF4059: Protein of u 20.8 93 0.002 28.9 2.8 24 892-915 20-43 (72)
131 PF09472 MtrF: Tetrahydrometha 20.8 60 0.0013 29.4 1.6 26 873-898 35-60 (64)
132 PHA03049 IMV membrane protein; 20.4 1.5E+02 0.0033 27.3 4.0 14 886-899 3-16 (68)
133 PF05399 EVI2A: Ectropic viral 20.4 88 0.0019 34.1 3.0 21 877-897 128-149 (227)
134 PF08114 PMP1_2: ATPase proteo 20.3 1.4E+02 0.003 25.4 3.5 10 875-884 6-15 (43)
135 PF05795 Plasmodium_Vir: Plasm 20.2 1.2E+02 0.0025 32.3 3.9 22 876-898 277-298 (354)
No 1
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=97.66 E-value=3.7e-05 Score=74.21 Aligned_cols=38 Identities=8% Similarity=0.026 Sum_probs=30.6
Q ss_pred cCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 002185 872 KYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHA 909 (955)
Q Consensus 872 KkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~ 909 (955)
.++++.++|+||++|+++++|+++++++||++|+|||.
T Consensus 58 ~h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 58 VHRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp SSSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred ccCccccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 56899999999999999999999999888887777664
No 2
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=97.32 E-value=7.8e-05 Score=68.97 Aligned_cols=35 Identities=20% Similarity=0.095 Sum_probs=26.1
Q ss_pred ccCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhh
Q 002185 871 QKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKY 905 (955)
Q Consensus 871 kKkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRR 905 (955)
.+++++.|+|+||+||+++++.+|++++++++++|
T Consensus 59 ~~~~ls~gaiagi~vg~~~~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 59 NRSGLSTGAIAGISVAVVAVVGGLVGFLCWWFVCR 93 (96)
T ss_pred CCCCcccccEEEEEeehhhHHHHHHHHHhheeEEe
Confidence 35789999999999999888877766654443333
No 3
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=96.23 E-value=0.0022 Score=71.59 Aligned_cols=36 Identities=25% Similarity=0.126 Sum_probs=28.5
Q ss_pred ccCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhc
Q 002185 871 QKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYK 906 (955)
Q Consensus 871 kKkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRR 906 (955)
.|++||.|+||||+|++||+|..|++++.+|++-|+
T Consensus 360 n~s~LstgaIaGIsvavvvvVgglvGfLcWwf~crg 395 (397)
T PF03302_consen 360 NKSGLSTGAIAGISVAVVVVVGGLVGFLCWWFICRG 395 (397)
T ss_pred ccccccccceeeeeehhHHHHHHHHHHHhhheeecc
Confidence 467999999999999999888888887655544433
No 4
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=96.07 E-value=0.0016 Score=65.90 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred ccCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 002185 871 QKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHAC 910 (955)
Q Consensus 871 kKkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~s 910 (955)
+|.||+.+.+|||+||+++++.+|.++++++++|.+.|++
T Consensus 122 ek~GL~T~tLVGIIVGVLlaIG~igGIIivvvRKmSGRys 161 (162)
T PF05808_consen 122 EKDGLSTVTLVGIIVGVLLAIGFIGGIIIVVVRKMSGRYS 161 (162)
T ss_dssp ----------------------------------------
T ss_pred ccCCcceeeeeeehhhHHHHHHHHhheeeEEeehhccccC
Confidence 5789999999999999999999999988777666677765
No 5
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=95.20 E-value=0.0053 Score=54.21 Aligned_cols=32 Identities=13% Similarity=0.326 Sum_probs=0.7
Q ss_pred ceehhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 002185 879 MIAIVVLSAFVAVVLCSAAAWVLLFKYKSHAC 910 (955)
Q Consensus 879 aIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~s 910 (955)
+++|+++|++++++++++++.|+++|.|||.+
T Consensus 10 vlaavIaG~Vvgll~ailLIlf~iyR~rkkdE 41 (64)
T PF01034_consen 10 VLAAVIAGGVVGLLFAILLILFLIYRMRKKDE 41 (64)
T ss_dssp ---------------------------S----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455555555555555555566677666654
No 6
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=94.94 E-value=0.0069 Score=65.92 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=0.0
Q ss_pred EEEEEeccccCCc---chHHHHHHHHHhccC-cccccEEEeceecCCCCCcEEEEEEeecCCcccchHHHHHHHHHhccC
Q 002185 735 VGLRLSVALYTFF---PLVSELAGEIAAGVF-MKQSQVRIIGANAAEQPDKTVVLTDLVPLGEKFDNTTAFLTYQRFWHK 810 (955)
Q Consensus 735 V~LRLRSPSFSfF---Py~SELEsELASgL~-L~vSQV~I~Nf~wesgPrkL~VtLdLFPsGdsFNnTEAsrI~srL~nq 810 (955)
+.++|+...-+|. -+...|-+.||..|| -+.++|.|.++. .|.-.+.|+=+-.+. +.=++.++.++..+|...
T Consensus 3 F~~~l~~d~~~f~~dv~~ki~lVekLA~~~GD~nts~ItV~sIt--~gstiVtwtNnTLp~-~~CP~eeI~~L~~~L~~~ 79 (290)
T PF05454_consen 3 FSATLDIDYESFNNDVQRKILLVEKLARLFGDRNTSSITVRSIT--SGSTIVTWTNNTLPT-SPCPKEEIEKLRKRLVDD 79 (290)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEcCCHHHhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEEec--CCCEEEEEEcCCCCC-CCCCHHHHHHHHHHHhcC
Confidence 3445554422222 334458888898886 557899999987 221112332222221 223345566666655554
Q ss_pred eeecC---CCCcC-CeeeeEEeC
Q 002185 811 QVVIK---SSYFG-DYEVLYVRY 829 (955)
Q Consensus 811 tV~i~---PSlFG-PYELL~ftY 829 (955)
.-... -..|| .|.|.++++
T Consensus 80 ~g~~~~~f~~am~pef~V~svsv 102 (290)
T PF05454_consen 80 DGKPSQEFVRAMGPEFKVKSVSV 102 (290)
T ss_dssp -----------------------
T ss_pred CCCcCHHHHHHhCCCCceeEEEE
Confidence 32111 12355 466667665
No 7
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=94.81 E-value=0.13 Score=61.23 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=35.2
Q ss_pred cEEEeceecCCCCC-cEEEEEEee-cCCcccchHHHHHHHHHhccCeee
Q 002185 767 QVRIIGANAAEQPD-KTVVLTDLV-PLGEKFDNTTAFLTYQRFWHKQVV 813 (955)
Q Consensus 767 QV~I~Nf~wesgPr-kL~VtLdLF-PsGdsFNnTEAsrI~srL~nqtV~ 813 (955)
-|.+.+.....|.+ -++++-.+- ..|+.+..+++-++...+..|++.
T Consensus 191 tVQmV~~sRl~G~~nP~EL~YyV~~~~G~pl~a~~AA~~Ln~ld~Q~~A 239 (684)
T PF12877_consen 191 TVQMVNMSRLEGPDNPVELTYYVEGQNGKPLPAVTAAKDLNLLDSQRMA 239 (684)
T ss_pred EEEEEEeeeccCCCCceEEEEEEEcCCCcCCcHHHHHHHHhccCHHHHH
Confidence 34455555555443 477776677 689999999999999999999884
No 8
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=93.80 E-value=0.018 Score=58.03 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=12.3
Q ss_pred CCCcceehhhHHHHHHHH
Q 002185 875 LSGGMIAIVVLSAFVAVV 892 (955)
Q Consensus 875 LSkGaIAGIVLGSVVlVV 892 (955)
-++.+|||+|||..+.+|
T Consensus 46 knknIVIGvVVGVGg~il 63 (154)
T PF04478_consen 46 KNKNIVIGVVVGVGGPIL 63 (154)
T ss_pred CCccEEEEEEecccHHHH
Confidence 355789999998544443
No 9
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=91.99 E-value=0.074 Score=57.24 Aligned_cols=32 Identities=16% Similarity=0.088 Sum_probs=24.0
Q ss_pred cceehhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 002185 878 GMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHA 909 (955)
Q Consensus 878 GaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~ 909 (955)
..||-|+||+++++|+|++++.||+.|||++.
T Consensus 270 ~~~vPIaVG~~La~lvlivLiaYli~Rrr~~~ 301 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLIVLIAYLIGRRRSRA 301 (306)
T ss_pred cchHHHHHHHHHHHHHHHHHHhheeEeccccc
Confidence 57888999988877777777777776666654
No 10
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=91.90 E-value=0.11 Score=47.85 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=29.5
Q ss_pred CCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 002185 873 YGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQ 911 (955)
Q Consensus 873 kgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sq 911 (955)
..++.|+.+|||+|=+++.+++++++++|. |.|+|.+|
T Consensus 29 ~~ls~g~LaGiV~~D~vlTLLIv~~vy~ca-r~r~r~~~ 66 (79)
T PF07213_consen 29 YPLSPGLLAGIVAADAVLTLLIVLVVYYCA-RPRRRPTQ 66 (79)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccCCcc
Confidence 568999999999999999999888876664 44444443
No 11
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=91.31 E-value=0.13 Score=51.41 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=8.3
Q ss_pred CCCcceehhhHHHHHH
Q 002185 875 LSGGMIAIVVLSAFVA 890 (955)
Q Consensus 875 LSkGaIAGIVLGSVVl 890 (955)
+..++|+||++|+|++
T Consensus 76 ~~~~iivgvi~~Vi~I 91 (179)
T PF13908_consen 76 FITGIIVGVICGVIAI 91 (179)
T ss_pred ceeeeeeehhhHHHHH
Confidence 3445566655554443
No 12
>PF15102 TMEM154: TMEM154 protein family
Probab=91.29 E-value=0.13 Score=51.78 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=21.8
Q ss_pred CCCcceehhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 002185 875 LSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQ 911 (955)
Q Consensus 875 LSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sq 911 (955)
.....|+.|+|..|+++++|+.+++++++.||||.++
T Consensus 53 ~q~efiLmIlIP~VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 53 SQLEFILMILIPLVLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred CCcceEEEEeHHHHHHHHHHHHHHHheeEEeecccCC
Confidence 3445577777777777666666655554444444433
No 13
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=90.71 E-value=0.33 Score=39.56 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=17.5
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 002185 881 AIVVLSAFVAVVLCSAAAWVLLFKYKSHA 909 (955)
Q Consensus 881 AGIVLGSVVlVVLLsAaa~LLLLRRRRR~ 909 (955)
++|++|.++++++++..+++++.++||.+
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 46666777777666666555545555433
No 14
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=90.18 E-value=0.37 Score=46.27 Aligned_cols=13 Identities=23% Similarity=0.074 Sum_probs=6.8
Q ss_pred CCCCccCccCCCc
Q 002185 916 PQSLQTSHVKPSV 928 (955)
Q Consensus 916 ~~pFaSs~~K~SG 928 (955)
.--...|+...++
T Consensus 33 P~~gt~w~~pp~~ 45 (130)
T PF12273_consen 33 PIYGTRWMAPPSY 45 (130)
T ss_pred CcCCceecCCCCC
Confidence 3345666664444
No 15
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.13 E-value=0.31 Score=52.97 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=22.2
Q ss_pred cCCCCCcceehhhHHHHHHHHHHHHHHHHHH
Q 002185 872 KYGLSGGMIAIVVLSAFVAVVLCSAAAWVLL 902 (955)
Q Consensus 872 KkgLSkGaIAGIVLGSVVlVVLLsAaa~LLL 902 (955)
++++++|.+|+|.+++.+++++|++++.+++
T Consensus 221 ~~~l~~G~VVlIslAiALG~v~ll~l~Gii~ 251 (281)
T PF12768_consen 221 GKKLSRGFVVLISLAIALGTVFLLVLIGIIL 251 (281)
T ss_pred cccccceEEEEEehHHHHHHHHHHHHHHHHH
Confidence 5899999999998887666655555544443
No 16
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=89.04 E-value=0.14 Score=41.93 Aligned_cols=8 Identities=0% Similarity=0.347 Sum_probs=3.2
Q ss_pred HHHHhhcc
Q 002185 900 VLLFKYKS 907 (955)
Q Consensus 900 LLLLRRRR 907 (955)
|+++|||+
T Consensus 32 l~~~~rR~ 39 (40)
T PF08693_consen 32 LFFWYRRK 39 (40)
T ss_pred hheEEecc
Confidence 34334443
No 17
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.68 E-value=0.77 Score=41.30 Aligned_cols=35 Identities=23% Similarity=0.495 Sum_probs=25.1
Q ss_pred ccCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhc
Q 002185 871 QKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYK 906 (955)
Q Consensus 871 kKkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRR 906 (955)
+.+|+|-|+|+-|+||+++++.++--.+ ++++.||
T Consensus 6 ~~KGlnPGlIVLlvV~g~ll~flvGnyv-lY~Yaqk 40 (69)
T PF04689_consen 6 EAKGLNPGLIVLLVVAGLLLVFLVGNYV-LYVYAQK 40 (69)
T ss_pred cccCCCCCeEEeehHHHHHHHHHHHHHH-HHHHHhh
Confidence 4689999999999999877766554444 4444443
No 18
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=88.40 E-value=0.14 Score=58.60 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCCcceehhhHHHHHHHHHHHHHHHHHHHhhccccccc
Q 002185 875 LSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQA 912 (955)
Q Consensus 875 LSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa 912 (955)
....+++++++|++++++++++++|+|++|||||+...
T Consensus 349 ~~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 349 SRGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp --------------------------------------
T ss_pred CcccchHHHHHHHHHHHHHHHHHhheeeeehhcccccc
Confidence 34456777777888888888888888876666554433
No 19
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=87.30 E-value=0.59 Score=47.44 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=21.4
Q ss_pred CCCCCcceehhhHHHHHHHHHHHHHHH
Q 002185 873 YGLSGGMIAIVVLSAFVAVVLCSAAAW 899 (955)
Q Consensus 873 kgLSkGaIAGIVLGSVVlVVLLsAaa~ 899 (955)
..+++.+|+|||.|.|+++.++.++++
T Consensus 56 ~~lsgtAIaGIVfgiVfimgvva~i~i 82 (155)
T PF10873_consen 56 DVLSGTAIAGIVFGIVFIMGVVAGIAI 82 (155)
T ss_pred cccccceeeeeehhhHHHHHHHHHHHH
Confidence 457899999999999888877766643
No 20
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=84.47 E-value=0.71 Score=50.93 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccc
Q 002185 888 FVAVVLCSAAAWVLLFKYKSHAC 910 (955)
Q Consensus 888 VVlVVLLsAaa~LLLLRRRRR~s 910 (955)
++++++|+.+++||+||+||+++
T Consensus 264 aIliIVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 264 AILIIVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445556666788888777544
No 21
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=82.89 E-value=1.3 Score=45.48 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=19.9
Q ss_pred ccCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 871 QKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 871 kKkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
.......|+|+|||- +|+++ |+-++.-|+.++|||
T Consensus 108 ~~~~~~~g~IaGIvs-av~va-lvGAvsSyiaYqkKK 142 (169)
T PF12301_consen 108 QDGEAEAGTIAGIVS-AVVVA-LVGAVSSYIAYQKKK 142 (169)
T ss_pred cccCcccchhhhHHH-HHHHH-HHHHHHHHHHHHhhc
Confidence 356678899999883 33322 333333455555554
No 22
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=82.80 E-value=0.97 Score=45.26 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=19.9
Q ss_pred CCCCcceehhhHHHHHHHHHHHHHHH
Q 002185 874 GLSGGMIAIVVLSAFVAVVLCSAAAW 899 (955)
Q Consensus 874 gLSkGaIAGIVLGSVVlVVLLsAaa~ 899 (955)
...++++++|++|+|+++|+++++++
T Consensus 71 ~p~~~~~~~iivgvi~~Vi~Iv~~Iv 96 (179)
T PF13908_consen 71 DPPIYFITGIIVGVICGVIAIVVLIV 96 (179)
T ss_pred CccccceeeeeeehhhHHHHHHHhHh
Confidence 34578899999999998877765544
No 23
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=82.36 E-value=0.41 Score=42.71 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=2.3
Q ss_pred cCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 002185 872 KYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEV 915 (955)
Q Consensus 872 KkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~e~ 915 (955)
+...-.++|+|+|+|.++++++++.+ ++.+.||.+....-.|.
T Consensus 7 ~~~vlaavIaG~Vvgll~ailLIlf~-iyR~rkkdEGSY~l~e~ 49 (64)
T PF01034_consen 7 RSEVLAAVIAGGVVGLLFAILLILFL-IYRMRKKDEGSYDLDEP 49 (64)
T ss_dssp -------------------------------S------SS--S-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCccCCCC
Confidence 44556999999999887777766555 57778888765544443
No 24
>PHA03265 envelope glycoprotein D; Provisional
Probab=82.18 E-value=0.78 Score=51.91 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=17.3
Q ss_pred CCcceehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 876 SGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 876 SkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
+-+..+||+||..++-++++++++|++|||||
T Consensus 345 ~~~~~~g~~ig~~i~glv~vg~il~~~~rr~k 376 (402)
T PHA03265 345 SNSTFVGISVGLGIAGLVLVGVILYVCLRRKK 376 (402)
T ss_pred CCCcccceEEccchhhhhhhhHHHHHHhhhhh
Confidence 34445566655544444455555555566655
No 25
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=81.32 E-value=0.48 Score=44.44 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=17.9
Q ss_pred CCcceehhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 002185 876 SGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHAC 910 (955)
Q Consensus 876 SkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~s 910 (955)
...+|++++|+.++++|+|.++.+|.++|.|++..
T Consensus 60 ~~~iili~lls~v~IlVily~IyYFVILRer~~~~ 94 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIYYFVILRERQKSI 94 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhheEEEEEecccccc
Confidence 33444444555555555555555555556555443
No 26
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=80.53 E-value=0.64 Score=41.81 Aligned_cols=18 Identities=6% Similarity=0.165 Sum_probs=7.9
Q ss_pred eehhhHHHHHHHHHHHHH
Q 002185 880 IAIVVLSAFVAVVLCSAA 897 (955)
Q Consensus 880 IAGIVLGSVVlVVLLsAa 897 (955)
|+++++++++++++++++
T Consensus 2 ii~~~~~g~~~ll~~v~~ 19 (75)
T PF14575_consen 2 IIASIIVGVLLLLVLVII 19 (75)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EEehHHHHHHHHHHhhee
Confidence 344444444444444443
No 27
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=80.41 E-value=1.8 Score=46.28 Aligned_cols=19 Identities=5% Similarity=0.193 Sum_probs=9.3
Q ss_pred cceehhhHHHHHHHHHHHH
Q 002185 878 GMIAIVVLSAFVAVVLCSA 896 (955)
Q Consensus 878 GaIAGIVLGSVVlVVLLsA 896 (955)
.+++|||.|+++++|+|++
T Consensus 38 ~I~iaiVAG~~tVILVI~i 56 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFI 56 (221)
T ss_pred eeeeeeecchhhhHHHHHH
Confidence 3455555555444444433
No 28
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=79.03 E-value=1.2 Score=49.04 Aligned_cols=26 Identities=12% Similarity=-0.170 Sum_probs=13.9
Q ss_pred cCCCCCcc-eehhhHHHHHHHHHHHHH
Q 002185 872 KYGLSGGM-IAIVVLSAFVAVVLCSAA 897 (955)
Q Consensus 872 KkgLSkGa-IAGIVLGSVVlVVLLsAa 897 (955)
+++++.|. |+|+++|.++++++++++
T Consensus 207 ~~~~~~W~iv~g~~~G~~~L~ll~~lv 233 (278)
T PF06697_consen 207 RKRSWWWKIVVGVVGGVVLLGLLSLLV 233 (278)
T ss_pred CCcceeEEEEEEehHHHHHHHHHHHHH
Confidence 55566676 445566655544443333
No 29
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=77.52 E-value=3.1 Score=44.02 Aligned_cols=29 Identities=14% Similarity=0.009 Sum_probs=15.0
Q ss_pred ceehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 879 MIAIVVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 879 aIAGIVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
++|+||+.+.+++++++++++||+++||.
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRS 129 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhcc
Confidence 66666655544444444444455555544
No 30
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=75.82 E-value=13 Score=39.60 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=53.1
Q ss_pred cccceEEEEEEeccccCCcch-------HHHHHHHHHhccCcccccEEEeceecCC--CCCcEEEEEEeecCC-cccchH
Q 002185 729 CVWPMQVGLRLSVALYTFFPL-------VSELAGEIAAGVFMKQSQVRIIGANAAE--QPDKTVVLTDLVPLG-EKFDNT 798 (955)
Q Consensus 729 CVyPItV~LRLRSPSFSfFPy-------~SELEsELASgL~L~vSQV~I~Nf~wes--gPrkL~VtLdLFPsG-dsFNnT 798 (955)
|.+|.--.+...+.+...+++ .++|+++|.+..+..+..|.+.+..... ..+.-.+.|++=+.. ..-++.
T Consensus 67 ~~~p~L~~~~~~s~s~~~~~~v~~~~~~~~~L~~~l~~~c~~~~~~v~~~~~~~~~~~~~~~~vi~V~l~~l~~~~~~R~ 146 (282)
T PF05827_consen 67 SAFPNLRRYLYSSSSSLVLPAVESGWLDLSQLAEYLKEKCGASVVIVDVSDLSEDSFEEYKPRVIRVDLPPLPSSSESRK 146 (282)
T ss_pred CcchHHHHHHhcCCcceeeeeEecCccCHHHHHHHHHHHhCcCceEEecCccccccccccCCcEEEEECCCCCCccccch
Confidence 777765544444433333333 3588899998887765556555543221 112223444454422 225566
Q ss_pred HHHHHHHHhccCeeecCCCCcCCeeeeEEeC
Q 002185 799 TAFLTYQRFWHKQVVIKSSYFGDYEVLYVRY 829 (955)
Q Consensus 799 EAsrI~srL~nqtV~i~PSlFGPYELL~ftY 829 (955)
++++=.+.+..+-+...++-. +|.+||...
T Consensus 147 ~~L~~nD~~l~~vl~~l~s~~-~ytvIyts~ 176 (282)
T PF05827_consen 147 EALSDNDEFLRKVLSKLPSPD-PYTVIYTST 176 (282)
T ss_pred hhhhhhhHHHHHHHHhcCCCC-cEEEEEEcc
Confidence 666555544444333345555 798888764
No 31
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=71.88 E-value=5.3 Score=38.04 Aligned_cols=34 Identities=6% Similarity=0.088 Sum_probs=18.7
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 002185 880 IAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAE 913 (955)
Q Consensus 880 IAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~ 913 (955)
-+||-.++|.++.+|+.+.||.+.++|||.++..
T Consensus 32 ~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRrPI 65 (94)
T PF05393_consen 32 NLGMWFLVICGIFILLVILWFVCCKKRKRSRRPI 65 (94)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Confidence 3444455555555565666666566565555443
No 32
>PTZ00046 rifin; Provisional
Probab=71.74 E-value=3.4 Score=46.98 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhhccccc
Q 002185 890 AVVLCSAAAWVLLFKYKSHAC 910 (955)
Q Consensus 890 lVVLLsAaa~LLLLRRRRR~s 910 (955)
++++|+.+++||+||+||+.+
T Consensus 325 vVIVLIMvIIYLILRYRRKKK 345 (358)
T PTZ00046 325 VVIVLIMVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHHHHHHHhhhcch
Confidence 334455667788888887654
No 33
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=71.05 E-value=3.5 Score=46.73 Aligned_cols=29 Identities=10% Similarity=0.269 Sum_probs=17.2
Q ss_pred hhhHHHHH-HHHHHHHHHHHHHHhhccccc
Q 002185 882 IVVLSAFV-AVVLCSAAAWVLLFKYKSHAC 910 (955)
Q Consensus 882 GIVLGSVV-lVVLLsAaa~LLLLRRRRR~s 910 (955)
+|++++++ ++++|+.+++||+||+||+.+
T Consensus 311 ~IiaSiIAIvvIVLIMvIIYLILRYRRKKK 340 (353)
T TIGR01477 311 PIIASIIAILIIVLIMVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 34444333 334455667788888887654
No 34
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=69.30 E-value=6.3 Score=39.15 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=21.8
Q ss_pred CCCcceehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 875 LSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 875 LSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
.-.+.|++.|||++.++++.++.+.+++.|++|
T Consensus 80 ~p~d~aLp~VIGGLcaL~LaamGA~~LLrR~cR 112 (126)
T PF03229_consen 80 PPVDFALPLVIGGLCALTLAAMGAGALLRRCCR 112 (126)
T ss_pred CCcccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445678899999987776655555555544444
No 35
>PHA03283 envelope glycoprotein E; Provisional
Probab=67.91 E-value=3.7 Score=48.58 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=29.4
Q ss_pred cceehhhHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCccC
Q 002185 878 GMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQSLQTS 922 (955)
Q Consensus 878 GaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~e~~~pFaSs 922 (955)
.++++++||++++++++.+++|.|+ |+|++.++.-++-|+|...
T Consensus 399 ~l~~~~~~~~~~~~~~~~l~vw~c~-~~r~~~~~~y~ilnpf~~v 442 (542)
T PHA03283 399 YLAFLLAIICTCAALLVALVVWGCI-LYRRSNRKPYEVLNPFETV 442 (542)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhee-eehhhcCCcccccCCCccc
Confidence 4456677888888777777777774 5444445556777888664
No 36
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=67.74 E-value=4.9 Score=44.66 Aligned_cols=6 Identities=17% Similarity=0.175 Sum_probs=3.6
Q ss_pred cccccc
Q 002185 727 CGCVWP 732 (955)
Q Consensus 727 C~CVyP 732 (955)
|.|-.|
T Consensus 44 ~Ecel~ 49 (295)
T TIGR01478 44 AEIQRP 49 (295)
T ss_pred hhhccc
Confidence 666555
No 37
>PTZ00370 STEVOR; Provisional
Probab=66.08 E-value=5.5 Score=44.34 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 002185 889 VAVVLCSAAAWVLLF 903 (955)
Q Consensus 889 VlVVLLsAaa~LLLL 903 (955)
|++++.++++++++|
T Consensus 263 vllil~vvliilYiw 277 (296)
T PTZ00370 263 VLLILAVVLIILYIW 277 (296)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 38
>PLN03150 hypothetical protein; Provisional
Probab=64.04 E-value=5.3 Score=47.32 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=20.4
Q ss_pred CCCCcceehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 874 GLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 874 gLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
+++.+.|++|++|++++++++++++ ++++|||+
T Consensus 540 ~~~~~~~i~~~~~~~~~~l~~~~~~-~~~~~~r~ 572 (623)
T PLN03150 540 HLSVGAKIGIAFGVSVAFLFLVICA-MCWWKRRQ 572 (623)
T ss_pred cCCCceEEEEEhHHHHHHHHHHHHH-hhheeehh
Confidence 3457788888888887655554444 34344444
No 39
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=63.49 E-value=7.8 Score=38.28 Aligned_cols=41 Identities=5% Similarity=0.054 Sum_probs=19.5
Q ss_pred CCCCCcceehhhHHHHHHHHH-HHHHHHHHHHhhcccccccc
Q 002185 873 YGLSGGMIAIVVLSAFVAVVL-CSAAAWVLLFKYKSHACQAE 913 (955)
Q Consensus 873 kgLSkGaIAGIVLGSVVlVVL-LsAaa~LLLLRRRRR~sqa~ 913 (955)
..+..++=.+.++|.++++++ ++++++|++|..||++++..
T Consensus 55 ~ql~h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 55 SQLVHRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp -SSSSSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS----
T ss_pred cccccCccccceeehhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 445556666666666666644 44444444455555555543
No 40
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=62.83 E-value=6.9 Score=35.33 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 883 VVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 883 IVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
|++++++++++|+++++++++.+||
T Consensus 2 ii~~~~~g~~~ll~~v~~~~~~~rr 26 (75)
T PF14575_consen 2 IIASIIVGVLLLLVLVIIVIVCFRR 26 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred EEehHHHHHHHHHHhheeEEEEEee
Confidence 6777888888888877776654444
No 41
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=62.57 E-value=9.7 Score=39.34 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=16.8
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 880 IAIVVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 880 IAGIVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
++.|+||.++++++..++++|+++..+.
T Consensus 19 l~~iIi~~~llll~~~G~~~~~~~~~~~ 46 (182)
T PRK08455 19 LLIIIIGVVVLLLLIVGVIAMLLMGSKE 46 (182)
T ss_pred eEEehHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3334446666666666777777665443
No 42
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=62.20 E-value=6.6 Score=40.44 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=18.5
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 881 AIVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 881 AGIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
..|+||.+++++++++++.+|-.||||+
T Consensus 32 ~tILiaIvVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 32 YTILIAIVVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 4567777777777777666665555554
No 43
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=61.53 E-value=9.7 Score=46.29 Aligned_cols=70 Identities=16% Similarity=0.018 Sum_probs=31.8
Q ss_pred cCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCccCccCCCccccccccchHHHHH-HHhcc
Q 002185 872 KYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQSLQTSHVKPSVVLIRLPCHLDLALQ-LIQGL 947 (955)
Q Consensus 872 KkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~e~~~pFaSs~~K~SG~~~~ls~~~dl~~q-~~qg~ 947 (955)
....+.|+|||+++..++++++|+.+. ++ ++||+|..= .++.|.....|.-=-+.++. -||.|.| |||-+
T Consensus 264 s~~~NlWII~gVlvPv~vV~~Iiiil~-~~-LCRk~K~eF---qpDa~~niqqR~K~q~psVq-GFD~AKqHlGQ~~ 334 (684)
T PF12877_consen 264 SPPNNLWIIAGVLVPVLVVLLIIIILY-WK-LCRKNKLEF---QPDAMSNIQQRQKPQAPSVQ-GFDYAKQHLGQHG 334 (684)
T ss_pred CCCCCeEEEehHhHHHHHHHHHHHHHH-HH-HhcccccCC---CchhhhhcccccccCCCCcc-cccHHHHHhcccc
Confidence 345688999998654444333333322 22 233333221 23444433222221122222 4788866 55544
No 44
>PF15050 SCIMP: SCIMP protein
Probab=60.47 E-value=9.2 Score=38.27 Aligned_cols=38 Identities=8% Similarity=0.157 Sum_probs=21.0
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHhhcccccccccCCCC
Q 002185 880 IAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQS 918 (955)
Q Consensus 880 IAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~e~~~p 918 (955)
+++.+++ ++++-+.++++.||+.|+..|.-+..+...+
T Consensus 9 WiiLAVa-II~vS~~lglIlyCvcR~~lRqGkkweiakp 46 (133)
T PF15050_consen 9 WIILAVA-IILVSVVLGLILYCVCRWQLRQGKKWEIAKP 46 (133)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHccccceeccc
Confidence 3333443 4445555666778877766655555554433
No 45
>KOG4818 consensus Lysosomal-associated membrane protein [General function prediction only]
Probab=60.31 E-value=8.6 Score=43.90 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=20.4
Q ss_pred CCcceehhhHHHHHHHHHHHHHHHHHHHhhc
Q 002185 876 SGGMIAIVVLSAFVAVVLCSAAAWVLLFKYK 906 (955)
Q Consensus 876 SkGaIAGIVLGSVVlVVLLsAaa~LLLLRRR 906 (955)
-.-+++=||||++++.+++++++.+||-|||
T Consensus 324 d~siv~PivVg~~l~gl~~~vliaylIgrr~ 354 (362)
T KOG4818|consen 324 DLNIVLPIAVGAILAGLVLVVLIAYLIGRRR 354 (362)
T ss_pred ccceecchHHHHHHHHHHHHHHHHhheehee
Confidence 3445666778877777777777777764333
No 46
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=60.06 E-value=4.3 Score=41.25 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=14.5
Q ss_pred CcceehhhHHHHHHHHHHHHHHHHH
Q 002185 877 GGMIAIVVLSAFVAVVLCSAAAWVL 901 (955)
Q Consensus 877 kGaIAGIVLGSVVlVVLLsAaa~LL 901 (955)
++..+.|+|=.++++++++++++++
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~ 180 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFF 180 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhhe
Confidence 5556666666666665555554444
No 47
>PF14828 Amnionless: Amnionless
Probab=59.79 E-value=42 Score=39.11 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=13.8
Q ss_pred ceehhhHHHHHHHHHHHHHH
Q 002185 879 MIAIVVLSAFVAVVLCSAAA 898 (955)
Q Consensus 879 aIAGIVLGSVVlVVLLsAaa 898 (955)
.|+++++|++++++++++++
T Consensus 339 ~v~~~vl~~Lllv~ll~~~~ 358 (437)
T PF14828_consen 339 TVVGIVLGCLLLVALLFGVI 358 (437)
T ss_pred eeeeehHHHHHHHHHHHHhh
Confidence 68888888877665555543
No 48
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=59.68 E-value=6.4 Score=44.58 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=19.3
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 880 IAIVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 880 IAGIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
++..|.|++++++++++++||+.+.+||+
T Consensus 299 ~~i~v~~~~vli~vl~~~~~~~~~~~~~~ 327 (361)
T PF12259_consen 299 VHIAVCGAIVLIIVLISLAWLYRTFRRRQ 327 (361)
T ss_pred EEEehhHHHHHHHHHHHHHhheeehHHHH
Confidence 44456777777788888888875544443
No 49
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=59.35 E-value=15 Score=45.96 Aligned_cols=13 Identities=0% Similarity=-0.412 Sum_probs=10.3
Q ss_pred CcEEEEEEeecCC
Q 002185 780 DKTVVLTDLVPLG 792 (955)
Q Consensus 780 rkL~VtLdLFPsG 792 (955)
..|+..|+.|..+
T Consensus 472 ~ildYEvky~ek~ 484 (996)
T KOG0196|consen 472 VILDYEVKYYEKD 484 (996)
T ss_pred cceeEEEEEeecc
Confidence 3589999999954
No 50
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=59.07 E-value=9 Score=42.00 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=27.1
Q ss_pred cCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 002185 872 KYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHAC 910 (955)
Q Consensus 872 KkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~s 910 (955)
.+++=-.+-++|+||++++++++ ++++.+++|||+++.
T Consensus 225 ~~G~VVlIslAiALG~v~ll~l~-Gii~~~~~r~~~~~~ 262 (281)
T PF12768_consen 225 SRGFVVLISLAIALGTVFLLVLI-GIILAYIRRRRQGYV 262 (281)
T ss_pred cceEEEEEehHHHHHHHHHHHHH-HHHHHHHHhhhccCc
Confidence 45666778889999888766654 666777788766544
No 51
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=57.88 E-value=12 Score=39.12 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 002185 884 VLSAFVAVVLCSAAAWVLLFKYKSHACQAE 913 (955)
Q Consensus 884 VLGSVVlVVLLsAaa~LLLLRRRRR~sqa~ 913 (955)
+||++++++.+.++.|++ +||+.|++..+
T Consensus 153 ~IG~~VlA~~VA~L~~~F-~RR~~rrsppe 181 (215)
T PF05084_consen 153 LIGAVVLAVSVAMLTWFF-LRRTGRRSPPE 181 (215)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhhccCCCCC
Confidence 456777777777777777 45555555443
No 52
>PF15345 TMEM51: Transmembrane protein 51
Probab=56.84 E-value=7.9 Score=41.95 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=13.7
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 880 IAIVVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 880 IAGIVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
||-++||+ ++++|++.+|++++.|||
T Consensus 60 VAyVLVG~--Gv~LLLLSICL~IR~KRr 85 (233)
T PF15345_consen 60 VAYVLVGS--GVALLLLSICLSIRDKRR 85 (233)
T ss_pred EEEehhhH--HHHHHHHHHHHHHHHHHH
Confidence 33334555 555555666777554443
No 53
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=56.82 E-value=3.8 Score=40.93 Aligned_cols=13 Identities=15% Similarity=0.018 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH
Q 002185 884 VLSAFVAVVLCSA 896 (955)
Q Consensus 884 VLGSVVlVVLLsA 896 (955)
.++++++++.+++
T Consensus 84 sal~v~lVl~lls 96 (129)
T PF12191_consen 84 SALSVVLVLALLS 96 (129)
T ss_dssp -------------
T ss_pred hHHHHHHHHHHHH
Confidence 3334444433333
No 54
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=55.23 E-value=7 Score=39.17 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=20.0
Q ss_pred cceehhh-HHHHHHHHHHHHHHHHHHHhhccccccc
Q 002185 878 GMIAIVV-LSAFVAVVLCSAAAWVLLFKYKSHACQA 912 (955)
Q Consensus 878 GaIAGIV-LGSVVlVVLLsAaa~LLLLRRRRR~sqa 912 (955)
.-|+|.+ ++.-+++++|.+++|..++|||+++++.
T Consensus 80 ~~~~G~vlLs~GLmlL~~~alcW~~~~rkK~~kr~e 115 (129)
T PF15099_consen 80 ISIFGPVLLSLGLMLLACSALCWKPIIRKKKKKRRE 115 (129)
T ss_pred hhhehHHHHHHHHHHHHhhhheehhhhHhHHHHhhh
Confidence 3466666 4444444555557777766666555444
No 55
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=53.61 E-value=3.1 Score=42.61 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=15.0
Q ss_pred ccCCCCCcceehhhHHHHHHHHHH
Q 002185 871 QKYGLSGGMIAIVVLSAFVAVVLC 894 (955)
Q Consensus 871 kKkgLSkGaIAGIVLGSVVlVVLL 894 (955)
+.+.+=.|++|||-+..++ ++++
T Consensus 46 knknIVIGvVVGVGg~ill-~il~ 68 (154)
T PF04478_consen 46 KNKNIVIGVVVGVGGPILL-GILA 68 (154)
T ss_pred CCccEEEEEEecccHHHHH-HHHH
Confidence 3456788999997665554 4444
No 56
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=53.15 E-value=15 Score=35.45 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccc
Q 002185 885 LSAFVAVVLCSAAAWVLLFKYKSHACQA 912 (955)
Q Consensus 885 LGSVVlVVLLsAaa~LLLLRRRRR~sqa 912 (955)
++.++++++|++++.++.||.++|.++.
T Consensus 4 l~il~llLll~l~asl~~wr~~~rq~k~ 31 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWRMKQRQKKA 31 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3344444444444444445554444333
No 57
>PF15069 FAM163: FAM163 family
Probab=53.06 E-value=13 Score=37.81 Aligned_cols=13 Identities=15% Similarity=0.156 Sum_probs=6.5
Q ss_pred CcceehhhHHHHH
Q 002185 877 GGMIAIVVLSAFV 889 (955)
Q Consensus 877 kGaIAGIVLGSVV 889 (955)
+.+|.|.+|+.|+
T Consensus 5 TvVItGgILAtVI 17 (143)
T PF15069_consen 5 TVVITGGILATVI 17 (143)
T ss_pred eEEEechHHHHHH
Confidence 3456665554333
No 58
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=52.44 E-value=10 Score=36.56 Aligned_cols=13 Identities=0% Similarity=-0.118 Sum_probs=5.2
Q ss_pred HHHHHHHHhhccc
Q 002185 896 AAAWVLLFKYKSH 908 (955)
Q Consensus 896 Aaa~LLLLRRRRR 908 (955)
+++++|+.|||+|
T Consensus 16 ~~~~~~~~rRR~r 28 (130)
T PF12273_consen 16 LFLFYCHNRRRRR 28 (130)
T ss_pred HHHHHHHHHHHhh
Confidence 3333444444433
No 59
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=49.60 E-value=16 Score=45.34 Aligned_cols=29 Identities=7% Similarity=0.079 Sum_probs=12.4
Q ss_pred CCcceehhhHHHHHHHHHHHHHHHHHHHhh
Q 002185 876 SGGMIAIVVLSAFVAVVLCSAAAWVLLFKY 905 (955)
Q Consensus 876 SkGaIAGIVLGSVVlVVLLsAaa~LLLLRR 905 (955)
.+.++.+|. |+++++|+|++.+++|+.||
T Consensus 271 HT~fLl~IL-G~~~livl~lL~vLl~yCrr 299 (807)
T PF10577_consen 271 HTVFLLAIL-GGTALIVLILLCVLLCYCRR 299 (807)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhhhc
Confidence 344455544 44444444444333443333
No 60
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=49.07 E-value=17 Score=29.98 Aligned_cols=21 Identities=5% Similarity=-0.078 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 002185 885 LSAFVAVVLCSAAAWVLLFKY 905 (955)
Q Consensus 885 LGSVVlVVLLsAaa~LLLLRR 905 (955)
++.+++.++.+++++++++++
T Consensus 13 ~~~v~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 13 IGTVLFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHccc
Confidence 344555555555554444433
No 61
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=46.72 E-value=25 Score=34.26 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=19.5
Q ss_pred cCCCCCcceehhhHHHHHHHHHHHHHH
Q 002185 872 KYGLSGGMIAIVVLSAFVAVVLCSAAA 898 (955)
Q Consensus 872 KkgLSkGaIAGIVLGSVVlVVLLsAaa 898 (955)
+.+-+.-..||+||+++++.+++++++
T Consensus 12 ~~g~sW~~LVGVv~~al~~SlLIalaa 38 (102)
T PF15176_consen 12 EGGRSWPFLVGVVVTALVTSLLIALAA 38 (102)
T ss_pred CCCcccHhHHHHHHHHHHHHHHHHHHH
Confidence 446678888998888877776665554
No 62
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=45.86 E-value=6.3 Score=44.65 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=21.3
Q ss_pred cCCCCCcceehhhHHH-HHHHHHHHHHHHHHHHhhcc
Q 002185 872 KYGLSGGMIAIVVLSA-FVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 872 KkgLSkGaIAGIVLGS-VVlVVLLsAaa~LLLLRRRR 907 (955)
...+|.-+|++|++|- +-++++|++.+++|++|+|+
T Consensus 312 ~d~~S~lvi~i~~vgLG~P~l~li~Ggl~v~~~r~r~ 348 (350)
T PF15065_consen 312 VDSFSPLVIMIMAVGLGVPLLLLILGGLYVCLRRRRK 348 (350)
T ss_pred ccchhHHHHHHHHHHhhHHHHHHHHhhheEEEecccc
Confidence 4678888888888774 33444455555455444443
No 63
>PF13584 BatD: Oxygen tolerance
Probab=44.38 E-value=24 Score=40.07 Aligned_cols=18 Identities=11% Similarity=-0.056 Sum_probs=13.6
Q ss_pred CcccccceEEEEEEeccc
Q 002185 726 PCGCVWPMQVGLRLSVAL 743 (955)
Q Consensus 726 pC~CVyPItV~LRLRSPS 743 (955)
...-.-|++..++++.-+
T Consensus 283 ~~~~Ge~vt~ti~i~g~G 300 (484)
T PF13584_consen 283 EVKVGEPVTRTITISGEG 300 (484)
T ss_pred cccCCCeEEEEEEEEEEc
Confidence 466677888888888763
No 64
>PHA03286 envelope glycoprotein E; Provisional
Probab=43.54 E-value=18 Score=42.70 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=22.8
Q ss_pred CCcceehhhHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCccCccCCC
Q 002185 876 SGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQSLQTSHVKPS 927 (955)
Q Consensus 876 SkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~e~~~pFaSs~~K~S 927 (955)
...+|..+++|++++ |++.++.+.+++|||||++ ..+.-+.+-...+.++
T Consensus 389 ~~~l~~s~~~~~~~~-~~~~~~~~~~~~~r~~~~r-~~~~~~~~~ky~~lp~ 438 (492)
T PHA03286 389 YSLLVSSMAAGAILV-VLLFALCIAGLYRRRRRHR-TNGYFQAYPKYMSLPS 438 (492)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHhHhHhhhhhhhh-cccccccCcccccCCC
Confidence 333444445544433 3333444455566554433 3344455555544444
No 65
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=43.51 E-value=20 Score=37.82 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=19.5
Q ss_pred cCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 872 KYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 872 KkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
++++..+-. ||+|||++.|++|+ |++||+.|
T Consensus 155 ~s~FD~~SF----iGGIVL~LGv~aI~-ff~~KF~k 185 (186)
T PF05283_consen 155 KSTFDAASF----IGGIVLTLGVLAII-FFLYKFCK 185 (186)
T ss_pred CCCCchhhh----hhHHHHHHHHHHHH-HHHhhhcc
Confidence 444554444 46888888887876 44467654
No 66
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=42.04 E-value=28 Score=39.58 Aligned_cols=33 Identities=9% Similarity=0.218 Sum_probs=15.8
Q ss_pred CCc-ceehhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 002185 876 SGG-MIAIVVLSAFVAVVLCSAAAWVLLFKYKSHA 909 (955)
Q Consensus 876 SkG-aIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~ 909 (955)
+.+ ++|.|++.++++++++++ +.|||+|-.|..
T Consensus 195 ~d~l~lv~Iv~~cvaG~aAliv-a~~cW~Rlqr~~ 228 (341)
T PF06809_consen 195 GDGLTLVLIVVCCVAGAAALIV-AGYCWYRLQREI 228 (341)
T ss_pred CCCeeeehhHHHHHHHHHHHHH-hhheEEEecccc
Confidence 444 334444445555544444 446666554433
No 67
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=41.70 E-value=27 Score=44.55 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=17.4
Q ss_pred CCCCcceehhhHHHHHHHHHHHHHHHHHH
Q 002185 874 GLSGGMIAIVVLSAFVAVVLCSAAAWVLL 902 (955)
Q Consensus 874 gLSkGaIAGIVLGSVVlVVLLsAaa~LLL 902 (955)
.+..++||+.+||+++++++|+.++|=|-
T Consensus 975 ~vp~wiIi~svl~GLLlL~llv~~LwK~G 1003 (1030)
T KOG3637|consen 975 PVPLWIIILSVLGGLLLLALLVLLLWKCG 1003 (1030)
T ss_pred ccceeeehHHHHHHHHHHHHHHHHHHhcC
Confidence 36777777766666655555555555443
No 68
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=40.43 E-value=11 Score=38.74 Aligned_cols=26 Identities=8% Similarity=0.188 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 882 IVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 882 GIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
+|+||..+++|+| +.++-|+|.||+|
T Consensus 11 ~i~igi~Ll~lLl-~cgiGcvwhwkhr 36 (158)
T PF11770_consen 11 AISIGISLLLLLL-LCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHHHHHHHHH-HHhcceEEEeecc
Confidence 4555554444332 2223344444443
No 69
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=40.26 E-value=8.6 Score=38.04 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=1.9
Q ss_pred cceehhhHHHHHHHHHHHHHHHHH
Q 002185 878 GMIAIVVLSAFVAVVLCSAAAWVL 901 (955)
Q Consensus 878 GaIAGIVLGSVVlVVLLsAaa~LL 901 (955)
--.+||.|=.|++.++|++..|+|
T Consensus 24 EEAaGIGiL~VILgiLLliGCWYc 47 (118)
T PF14991_consen 24 EEAAGIGILIVILGILLLIGCWYC 47 (118)
T ss_dssp ----SSS-----------------
T ss_pred HHhccceeHHHHHHHHHHHhheee
Confidence 335666654555555555555555
No 70
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=39.70 E-value=33 Score=34.69 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=11.1
Q ss_pred CcceehhhHHHHHHHHHHHHHHHHHH
Q 002185 877 GGMIAIVVLSAFVAVVLCSAAAWVLL 902 (955)
Q Consensus 877 kGaIAGIVLGSVVlVVLLsAaa~LLL 902 (955)
+.+|+.|++ ++++++++.+++||++
T Consensus 18 kkliiii~~-~~lll~~~g~~~~f~l 42 (170)
T PRK05696 18 KKLIIIIVI-GVLLALGGGGAAWFFM 42 (170)
T ss_pred eeEEeeHHH-HHHHHHHHHHHHHhhh
Confidence 333444443 3344444445555553
No 71
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=39.64 E-value=30 Score=34.98 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 002185 883 VVLSAFVAVVLCSAAAWVLLFKY 905 (955)
Q Consensus 883 IVLGSVVlVVLLsAaa~LLLLRR 905 (955)
+++|+++++|+++++++|.++|+
T Consensus 120 ~i~~~i~g~ll~i~~giy~~~r~ 142 (145)
T PF10661_consen 120 TILLSIGGILLAICGGIYVVLRK 142 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444545555555666664
No 72
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=39.23 E-value=8.6 Score=36.20 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=25.5
Q ss_pred CCCCCcceehhhHHHHHHHHHHH-HHHHHHHHhhccccc
Q 002185 873 YGLSGGMIAIVVLSAFVAVVLCS-AAAWVLLFKYKSHAC 910 (955)
Q Consensus 873 kgLSkGaIAGIVLGSVVlVVLLs-Aaa~LLLLRRRRR~s 910 (955)
+..+.++-.|+++|+++++++++ +++.|++|.+..|++
T Consensus 57 st~~~~ls~gaiagi~vg~~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 57 GANRSGLSTGAIAGISVAVVAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred ccCCCCcccccEEEEEeehhhHHHHHHHHHhheeEEeec
Confidence 44557788888888777766555 555566666666643
No 73
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=38.65 E-value=34 Score=32.14 Aligned_cols=26 Identities=8% Similarity=0.300 Sum_probs=8.5
Q ss_pred ceehhhHHHHHHHHHHHHHHHHHHHhhc
Q 002185 879 MIAIVVLSAFVAVVLCSAAAWVLLFKYK 906 (955)
Q Consensus 879 aIAGIVLGSVVlVVLLsAaa~LLLLRRR 906 (955)
.|++|++.+++ +++..++|.+.++..
T Consensus 5 ~i~~iialiv~--~iiaIvvW~iv~ieY 30 (81)
T PF00558_consen 5 EILAIIALIVA--LIIAIVVWTIVYIEY 30 (81)
T ss_dssp ---HHHHHHHH--HHHHHHHHHHH----
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 34554443333 333445565544333
No 74
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=38.08 E-value=23 Score=45.45 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=19.0
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHhhcccc
Q 002185 880 IAIVVLSAFVAVVLCSAAAWVLLFKYKSHA 909 (955)
Q Consensus 880 IAGIVLGSVVlVVLLsAaa~LLLLRRRRR~ 909 (955)
+.|+|+|.++++++|++++.+++.++|.|.
T Consensus 1514 ttGmVvGIvaAaaLcILilL~am~kyRnrd 1543 (1591)
T KOG3514|consen 1514 TTGMVVGIVAAAALCILILLYAMYKYRNRD 1543 (1591)
T ss_pred ccchhhHHHHHHHHHHHHHHhhcccccccc
Confidence 456666666666777776666666666554
No 75
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=36.22 E-value=35 Score=28.24 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=18.2
Q ss_pred cceehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 878 GMIAIVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 878 GaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
++|+|+++|.++ +++|...-..|..|.|+.
T Consensus 7 aIIv~V~vg~~i-iii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 7 AIIVAVVVGMAI-IIICMFYYACCYKKHRRQ 36 (38)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHcccccc
Confidence 466666665544 455555555777877754
No 76
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=36.12 E-value=30 Score=31.68 Aligned_cols=22 Identities=14% Similarity=-0.002 Sum_probs=14.1
Q ss_pred CCcceehhhHHHHHHHHHHHHH
Q 002185 876 SGGMIAIVVLSAFVAVVLCSAA 897 (955)
Q Consensus 876 SkGaIAGIVLGSVVlVVLLsAa 897 (955)
+.+..|||+.|.+++++.++..
T Consensus 31 ~qW~aIGvi~gi~~~~lt~ltN 52 (68)
T PF04971_consen 31 SQWAAIGVIGGIFFGLLTYLTN 52 (68)
T ss_pred ccchhHHHHHHHHHHHHHHHhH
Confidence 4566678777666666666554
No 77
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=35.55 E-value=3 Score=51.37 Aligned_cols=27 Identities=7% Similarity=-0.071 Sum_probs=20.0
Q ss_pred ccCCCCCcceehhhHHHHHHHHHHHHH
Q 002185 871 QKYGLSGGMIAIVVLSAFVAVVLCSAA 897 (955)
Q Consensus 871 kKkgLSkGaIAGIVLGSVVlVVLLsAa 897 (955)
.+++++.|+|+||+|.+|++|.+|+++
T Consensus 771 ~~~~~~~~~i~~~~v~~~~vv~~lvg~ 797 (800)
T PTZ00214 771 ELAKKRTAAIAGGTVAGVLVIGVLVGF 797 (800)
T ss_pred cccccccceeEEEEEEEeeeeeeeeeE
Confidence 357899999999998766665555553
No 78
>PHA03281 envelope glycoprotein E; Provisional
Probab=35.37 E-value=46 Score=40.30 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=15.5
Q ss_pred CCCCcceehhhHHH-HHHHHHHHHHHHHHH
Q 002185 874 GLSGGMIAIVVLSA-FVAVVLCSAAAWVLL 902 (955)
Q Consensus 874 gLSkGaIAGIVLGS-VVlVVLLsAaa~LLL 902 (955)
+.+.-+|-++.+|+ .+++++|++++.+|+
T Consensus 549 ~~~p~~~y~~l~~~~a~~~ll~l~~~~~c~ 578 (642)
T PHA03281 549 GTFPFKRYAAITGGFAALALLCLAIALICT 578 (642)
T ss_pred CCCCeEeehhhhhhhHHHHHHHHHHHHHHH
Confidence 33444555555554 455556666666663
No 79
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.87 E-value=39 Score=37.49 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 002185 886 SAFVAVVLCSAAAWVLLFKYKSHA 909 (955)
Q Consensus 886 GSVVlVVLLsAaa~LLLLRRRRR~ 909 (955)
+.+|++++|++++.|++|++++..
T Consensus 6 ~vlVaa~llV~~i~l~l~~r~raA 29 (299)
T KOG3054|consen 6 AVLVAAALLVAVILLFLWKRRRAA 29 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 455666666666666655555433
No 80
>PHA03291 envelope glycoprotein I; Provisional
Probab=33.74 E-value=56 Score=37.85 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=35.3
Q ss_pred ccCCCCCcceehhhHHHHHHHHHHHHH-HHHHHHhhcccccccccCCCCCccCccCCCccccccccchHHHHHHHhcccc
Q 002185 871 QKYGLSGGMIAIVVLSAFVAVVLCSAA-AWVLLFKYKSHACQAEEVPQSLQTSHVKPSVVLIRLPCHLDLALQLIQGLLR 949 (955)
Q Consensus 871 kKkgLSkGaIAGIVLGSVVlVVLLsAa-a~LLLLRRRRR~sqa~e~~~pFaSs~~K~SG~~~~ls~~~dl~~q~~qg~~~ 949 (955)
.+..++.--||-|+|=+.+++.++++- +|++..|+|||++..... +.+- ..++.+.--.|---+++|++-|-|
T Consensus 279 sr~~Lt~~qiiQiAIPasii~cV~lGSC~Ccl~R~~rRr~r~~~~I---Y~P~---~p~~~s~sAvNEaA~ArLg~eL~~ 352 (401)
T PHA03291 279 SRYELTVTQIIQIAIPASIIACVFLGSCACCLHRRCRRRRRRPARI---YRPP---SPVAPSISAVNEAALARLGDELKR 352 (401)
T ss_pred hhhhhhhhhhheeccchHHHHHhhhhhhhhhhhhhhhcccCCcCcc---cCCC---CCCccchhhhhHHHHHHHHHHHhc
Confidence 356777778888887665554444443 333333334333322222 2220 011222112344456788887765
No 81
>PRK06287 cobalt transport protein CbiN; Validated
Probab=33.48 E-value=47 Score=32.05 Aligned_cols=13 Identities=23% Similarity=0.294 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 002185 886 SAFVAVVLCSAAA 898 (955)
Q Consensus 886 GSVVlVVLLsAaa 898 (955)
+++++++++++++
T Consensus 82 sgiiGv~i~l~l~ 94 (107)
T PRK06287 82 AMVIGTLLVLALA 94 (107)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 82
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=31.97 E-value=36 Score=31.53 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 002185 886 SAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 886 GSVVlVVLLsAaa~LLLLRRRRR 908 (955)
|++.+++++++.+++|++-||.+
T Consensus 2 ggllll~vvll~~clC~lsrRvk 24 (74)
T PF05083_consen 2 GGLLLLAVVLLSACLCRLSRRVK 24 (74)
T ss_pred cchhhHHHHHHHHHHHHHHhhhh
Confidence 55555555556667787755543
No 83
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=31.94 E-value=15 Score=42.39 Aligned_cols=18 Identities=17% Similarity=0.408 Sum_probs=0.0
Q ss_pred ceehhhHHHHHHHHHHHH
Q 002185 879 MIAIVVLSAFVAVVLCSA 896 (955)
Q Consensus 879 aIAGIVLGSVVlVVLLsA 896 (955)
.|.||+||.+|+-++|++
T Consensus 11 TITgIcvaLlVVGi~Cvv 28 (404)
T PF02158_consen 11 TITGICVALLVVGIVCVV 28 (404)
T ss_dssp ------------------
T ss_pred hhhhhhHHHHHHHHHHHH
Confidence 478888877666666654
No 84
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=31.89 E-value=40 Score=31.33 Aligned_cols=28 Identities=14% Similarity=0.282 Sum_probs=11.9
Q ss_pred ceehhhHHHHHHHHHHHHHHHHHHHhhc
Q 002185 879 MIAIVVLSAFVAVVLCSAAAWVLLFKYK 906 (955)
Q Consensus 879 aIAGIVLGSVVlVVLLsAaa~LLLLRRR 906 (955)
.++||++|..+..+++.+++++++.|.|
T Consensus 30 ~~~gi~~~~~~~g~i~g~~~~~~~~k~K 57 (95)
T PF07178_consen 30 FVIGILSGHFLIGLILGIVLWWGYRKFK 57 (95)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3455555554333333333333333333
No 85
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=31.43 E-value=16 Score=42.47 Aligned_cols=49 Identities=8% Similarity=-0.082 Sum_probs=0.0
Q ss_pred CCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCccC
Q 002185 873 YGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQSLQTS 922 (955)
Q Consensus 873 kgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~e~~~pFaSs 922 (955)
..+-.++++|+++ +++++++++.+++.+.+|||++.+........+.+.
T Consensus 351 ~~~~l~vVlgvav-livVv~viv~vc~~~rrrR~~~~~~~~~~~~~YtsL 399 (439)
T PF02480_consen 351 GAALLGVVLGVAV-LIVVVGVIVWVCLRCRRRRRQRDKILNPFSPVYTSL 399 (439)
T ss_dssp --------------------------------------------------
T ss_pred ccchHHHHHHHHH-HHHHHHHHhheeeeehhcccccccccCcCCCccccC
Confidence 3344444445444 555555566666788888877764444444555443
No 86
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=31.16 E-value=16 Score=40.66 Aligned_cols=30 Identities=10% Similarity=0.329 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccccccC
Q 002185 884 VLSAFVAVVLCSAAAWVLLFKYKSHACQAEEV 915 (955)
Q Consensus 884 VLGSVVlVVLLsAaa~LLLLRRRRR~sqa~e~ 915 (955)
.|-+|++|+ ++++.|++||||+|.++..++
T Consensus 231 LVPSiILVL--LaVGGLLfYr~rrRs~~e~q~ 260 (285)
T PF05337_consen 231 LVPSIILVL--LAVGGLLFYRRRRRSHREPQT 260 (285)
T ss_dssp --------------------------------
T ss_pred cccchhhhh--hhccceeeecccccccccccc
Confidence 344444433 344446666777666555433
No 87
>PRK00523 hypothetical protein; Provisional
Probab=31.14 E-value=55 Score=30.29 Aligned_cols=25 Identities=8% Similarity=0.012 Sum_probs=10.4
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHhh
Q 002185 881 AIVVLSAFVAVVLCSAAAWVLLFKY 905 (955)
Q Consensus 881 AGIVLGSVVlVVLLsAaa~LLLLRR 905 (955)
.|++|+.+++++++-+++.|++-|+
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffiark 28 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVSKK 28 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333333334444444
No 88
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=30.73 E-value=52 Score=33.07 Aligned_cols=28 Identities=7% Similarity=0.030 Sum_probs=11.8
Q ss_pred CcceehhhHHHHHHHHHHHHHHHHHHHhh
Q 002185 877 GGMIAIVVLSAFVAVVLCSAAAWVLLFKY 905 (955)
Q Consensus 877 kGaIAGIVLGSVVlVVLLsAaa~LLLLRR 905 (955)
+..|+.|++.+++++++..+..||+ +++
T Consensus 15 kkkl~ii~l~~l~l~~~g~gg~~~~-~~~ 42 (162)
T PRK07021 15 KRKLWLIILILLLLAAAAGAGYSWW-LSK 42 (162)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-hhc
Confidence 4444444443444433333333444 444
No 89
>PF12669 P12: Virus attachment protein p12 family
Probab=30.66 E-value=53 Score=28.70 Aligned_cols=9 Identities=22% Similarity=0.121 Sum_probs=3.8
Q ss_pred HHHHhhccc
Q 002185 900 VLLFKYKSH 908 (955)
Q Consensus 900 LLLLRRRRR 908 (955)
..++|++|+
T Consensus 18 r~~~k~~K~ 26 (58)
T PF12669_consen 18 RKFIKDKKK 26 (58)
T ss_pred HHHHHHhhc
Confidence 344444443
No 90
>PF07253 Gypsy: Gypsy protein; InterPro: IPR009882 This family consists of several Gypsy/Env proteins from Drosophila and Ceratitis fruit fly species. Gypsy is an endogenous retrovirus of Drosophila melanogaster. Phylogenetic studies suggest that occasional horizontal transfer events of gypsy occur between Drosophila species. Gypsy possesses infective properties associated with the products of the envelope gene that might be at the origin of these interspecies transfers [].
Probab=30.13 E-value=49 Score=39.26 Aligned_cols=37 Identities=14% Similarity=0.376 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCC
Q 002185 883 VVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQSL 919 (955)
Q Consensus 883 IVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~e~~~pF 919 (955)
+++|+++.+.++.+++++++.|+||...+..+....|
T Consensus 420 l~~gv~l~~~Ii~~i~~~~~~r~~r~~~~~~~~~~~~ 456 (472)
T PF07253_consen 420 LVFGVLLSIMIIIIIALILMLRKKRQKAQIQQSIKTI 456 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence 4567777677777777777777777666665444333
No 91
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=29.46 E-value=69 Score=26.54 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=9.6
Q ss_pred ceehhhHHHHHHHHH
Q 002185 879 MIAIVVLSAFVAVVL 893 (955)
Q Consensus 879 aIAGIVLGSVVlVVL 893 (955)
+..|||+|.+...++
T Consensus 5 lL~GiVlGli~vtl~ 19 (37)
T PF02529_consen 5 LLSGIVLGLIPVTLA 19 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhHHHHHH
Confidence 346888887665443
No 92
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=28.43 E-value=33 Score=42.32 Aligned_cols=34 Identities=6% Similarity=0.112 Sum_probs=25.9
Q ss_pred CCCcceehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 875 LSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 875 LSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
.-.|.||.+++|.++++++-+..++||+.|++++
T Consensus 89 ~~~g~~v~~~i~ll~~il~P~vg~~fCcCRCc~~ 122 (806)
T PF05478_consen 89 YEWGFLVCAVIGLLFIILMPLVGLCFCCCRCCGN 122 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 4467788888988888877777778888776654
No 93
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=27.46 E-value=23 Score=38.34 Aligned_cols=14 Identities=0% Similarity=0.221 Sum_probs=6.0
Q ss_pred eehhhHHHHHHHHH
Q 002185 880 IAIVVLSAFVAVVL 893 (955)
Q Consensus 880 IAGIVLGSVVlVVL 893 (955)
.+-|++|+|+++++
T Consensus 36 ~~~I~iaiVAG~~t 49 (221)
T PF08374_consen 36 YVKIMIAIVAGIMT 49 (221)
T ss_pred ceeeeeeeecchhh
Confidence 33444444444433
No 94
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=27.34 E-value=26 Score=39.96 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=25.9
Q ss_pred CCCcceehhhHHHHHHHHHHHH-HHHHHHHhhccccc
Q 002185 875 LSGGMIAIVVLSAFVAVVLCSA-AAWVLLFKYKSHAC 910 (955)
Q Consensus 875 LSkGaIAGIVLGSVVlVVLLsA-aa~LLLLRRRRR~s 910 (955)
-..|+-.|+|+|+.|++|++++ +|-||.||+--|.+
T Consensus 360 n~s~LstgaIaGIsvavvvvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 360 NKSGLSTGAIAGISVAVVVVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred ccccccccceeeeeehhHHHHHHHHHHHhhheeeccc
Confidence 4457899999998777665555 77788888765543
No 95
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=27.23 E-value=62 Score=39.53 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=5.2
Q ss_pred cceehhhHHHHH
Q 002185 878 GMIAIVVLSAFV 889 (955)
Q Consensus 878 GaIAGIVLGSVV 889 (955)
++++++++|+++
T Consensus 629 ~~~~~~~~~~~~ 640 (968)
T PLN00113 629 WFYITCTLGAFL 640 (968)
T ss_pred eeehhHHHHHHH
Confidence 344444444433
No 96
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=27.07 E-value=50 Score=34.35 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccc
Q 002185 885 LSAFVAVVLCSAAAWVLLFKYKSHACQA 912 (955)
Q Consensus 885 LGSVVlVVLLsAaa~LLLLRRRRR~sqa 912 (955)
.-.+++++++++++|++++.+.+|++++
T Consensus 32 ~tILiaIvVliiiiivli~lcssRKkKa 59 (189)
T PF05568_consen 32 YTILIAIVVLIIIIIVLIYLCSSRKKKA 59 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3356666777777888887777766665
No 97
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=26.42 E-value=44 Score=26.32 Aligned_cols=12 Identities=17% Similarity=-0.061 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 002185 892 VLCSAAAWVLLF 903 (955)
Q Consensus 892 VLLsAaa~LLLL 903 (955)
++|++-.++.++
T Consensus 13 ~lLlgYLvyALi 24 (29)
T PRK14748 13 FLLLGYLVYALI 24 (29)
T ss_pred HHHHHHHHHHHh
Confidence 334444444433
No 98
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=26.33 E-value=20 Score=35.15 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhhccccccccc
Q 002185 890 AVVLCSAAAWVLLFKYKSHACQAEE 914 (955)
Q Consensus 890 lVVLLsAaa~LLLLRRRRR~sqa~e 914 (955)
.+++++++.||+++.+|||.++..+
T Consensus 8 ~~vv~~~i~yf~iRPQkKr~Ke~~e 32 (113)
T PRK06531 8 MFVVMLGLIFFMQRQQKKQAQERQN 32 (113)
T ss_pred HHHHHHHHHHheechHHHHHHHHHH
Confidence 3444545555554455555554544
No 99
>PHA02669 hypothetical protein; Provisional
Probab=26.16 E-value=36 Score=35.83 Aligned_cols=11 Identities=55% Similarity=0.540 Sum_probs=6.6
Q ss_pred HHHHHHHhccc
Q 002185 938 DLALQLIQGLL 948 (955)
Q Consensus 938 dl~~q~~qg~~ 948 (955)
.|+-||+.|-|
T Consensus 46 kLatQLGnGt~ 56 (210)
T PHA02669 46 KLATQLGNGTL 56 (210)
T ss_pred HHHHHhcCCcc
Confidence 46666666654
No 100
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=26.11 E-value=1.3e+02 Score=36.42 Aligned_cols=62 Identities=18% Similarity=0.110 Sum_probs=26.9
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCccCccCCCcccccccc----chHHHHHHHhcc
Q 002185 881 AIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAEEVPQSLQTSHVKPSVVLIRLPC----HLDLALQLIQGL 947 (955)
Q Consensus 881 AGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~e~~~pFaSs~~K~SG~~~~ls~----~~dl~~q~~qg~ 947 (955)
+-|.+|.+.++++|++.+ |+.+|++|-.+...| .+ -...-.+|.+.+..+ ++.|+-+++.|.
T Consensus 157 al~~~~~v~~l~~lvi~~-~~~~r~~k~~~~~~e---~~-~~p~~d~~~~~sspl~~l~pl~l~eli~~Gr 222 (534)
T KOG3653|consen 157 ALIPLLLVSLLAALVILA-FLGYRQRKNAREEIE---PV-LIPLEDSGPAPSSPLLELDPLQLLELIGRGR 222 (534)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHhhcccccCc---cC-cccCCCCCCCCCcccccCCchhhHHHhhcCc
Confidence 333344455444444443 444566554432211 11 112344555555333 344555555553
No 101
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.97 E-value=87 Score=30.24 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=25.7
Q ss_pred CCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 873 YGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 873 kgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
...+.|++.++|.|.++++|+|=.+.|+. +||.||
T Consensus 29 ~~~~Lgm~~lvI~~iFil~VilwfvCC~k-RkrsRr 63 (94)
T PF05393_consen 29 NWPNLGMWFLVICGIFILLVILWFVCCKK-RKRSRR 63 (94)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHH-hhhccC
Confidence 34577788888888888888887776665 666554
No 102
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=25.93 E-value=96 Score=28.57 Aligned_cols=12 Identities=33% Similarity=0.478 Sum_probs=6.5
Q ss_pred ccchHHHHHHHh
Q 002185 934 PCHLDLALQLIQ 945 (955)
Q Consensus 934 s~~~dl~~q~~q 945 (955)
+.||+-+-.|.-
T Consensus 55 ~~Hl~SfYkLFs 66 (68)
T PF05961_consen 55 PDHLSSFYKLFS 66 (68)
T ss_pred HHHHHHHHHHhc
Confidence 456665555543
No 103
>PRK13707 conjugal transfer pilus assembly protein TraL; Provisional
Probab=25.67 E-value=51 Score=31.56 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=11.5
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 880 IAIVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 880 IAGIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
++||+.|-++..+++.+++|+.+.|-|++
T Consensus 37 ~~Gi~~~~~l~g~i~g~~~~~~~r~lK~g 65 (101)
T PRK13707 37 GWGITTSKYLFGIIAAVLVWFGIRKLKKG 65 (101)
T ss_pred HHHHHHchHHHHHHHHHHHHHHHHHHHcC
Confidence 44444443333333333333343333433
No 104
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=25.47 E-value=37 Score=32.93 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 002185 886 SAFVAVVLCSAAA 898 (955)
Q Consensus 886 GSVVlVVLLsAaa 898 (955)
|++++++++++++
T Consensus 49 GG~iLilIii~Lv 61 (98)
T PF07204_consen 49 GGLILILIIIALV 61 (98)
T ss_pred chhhhHHHHHHHH
Confidence 4555555554443
No 105
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=25.43 E-value=77 Score=28.30 Aligned_cols=28 Identities=7% Similarity=-0.013 Sum_probs=18.3
Q ss_pred cceehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 878 GMIAIVVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 878 GaIAGIVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
-+|+|+++|..+.+..|.+ -+|++||.-
T Consensus 22 Ya~IGtalGvaisAgFLaL--KicmIrkhl 49 (61)
T PF14986_consen 22 YAIIGTALGVAISAGFLAL--KICMIRKHL 49 (61)
T ss_pred eeeehhHHHHHHHHHHHHH--HHHHHHHhh
Confidence 3788888887766655544 356666544
No 106
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=24.76 E-value=56 Score=40.33 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=8.9
Q ss_pred EEEEEeccccCCcchH
Q 002185 735 VGLRLSVALYTFFPLV 750 (955)
Q Consensus 735 V~LRLRSPSFSfFPy~ 750 (955)
-+++|..-+|.|+.|.
T Consensus 194 q~~~l~~i~l~Ds~yd 209 (807)
T KOG1094|consen 194 QGMYLSAIYLNDSTYD 209 (807)
T ss_pred ccccccceeecccccc
Confidence 4455555556666554
No 107
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=24.72 E-value=93 Score=30.53 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=25.2
Q ss_pred cCCCCCcceehhhHHHHHHHHHHHHHHHHHH
Q 002185 872 KYGLSGGMIAIVVLSAFVAVVLCSAAAWVLL 902 (955)
Q Consensus 872 KkgLSkGaIAGIVLGSVVlVVLLsAaa~LLL 902 (955)
+..+--+-|+-|.|.++++++-|++.+.||+
T Consensus 12 sGsL~PWeIfLItLasVvvavGl~aGLfFcv 42 (106)
T PF14654_consen 12 SGSLKPWEIFLITLASVVVAVGLFAGLFFCV 42 (106)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778899999988888888888877885
No 108
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.63 E-value=71 Score=28.59 Aligned_cols=25 Identities=4% Similarity=0.049 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Q 002185 885 LSAFVAVVLCSAAAWVLLFKYKSHAC 910 (955)
Q Consensus 885 LGSVVlVVLLsAaa~LLLLRRRRR~s 910 (955)
+|.+++.+++++++ ++++|+++|..
T Consensus 13 ~~t~~~~l~fiavi-~~ayr~~~K~~ 37 (60)
T COG4736 13 WGTIAFTLFFIAVI-YFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHHHHH-HHHhcccchhh
Confidence 45555555555554 44455555543
No 109
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=24.59 E-value=40 Score=33.36 Aligned_cols=19 Identities=0% Similarity=0.172 Sum_probs=14.2
Q ss_pred CCcceehhhHHHHHHHHHH
Q 002185 876 SGGMIAIVVLSAFVAVVLC 894 (955)
Q Consensus 876 SkGaIAGIVLGSVVlVVLL 894 (955)
.+.+++||.||+++++++-
T Consensus 4 ~~~~l~G~liGgiiGa~aa 22 (115)
T COG4980 4 GKDFLFGILIGGIIGAAAA 22 (115)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 3567889999988876654
No 110
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=24.07 E-value=50 Score=32.28 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 002185 890 AVVLCSAAAWVLLFKY 905 (955)
Q Consensus 890 lVVLLsAaa~LLLLRR 905 (955)
.+++++++.||+++|.
T Consensus 9 ~lv~i~~i~yF~~iRP 24 (109)
T PRK05886 9 PFLLIMGGFMYFASRR 24 (109)
T ss_pred HHHHHHHHHHHHHccH
Confidence 3344445556665543
No 111
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=24.06 E-value=30 Score=34.53 Aligned_cols=15 Identities=33% Similarity=0.363 Sum_probs=10.8
Q ss_pred cceehhhHHHHHHHH
Q 002185 878 GMIAIVVLSAFVAVV 892 (955)
Q Consensus 878 GaIAGIVLGSVVlVV 892 (955)
-+|.|+|+|+.++++
T Consensus 89 ~l~LGvV~GG~i~vL 103 (127)
T PF06040_consen 89 YLILGVVAGGLIAVL 103 (127)
T ss_pred hhhHHHHhccHHHHH
Confidence 467788888776665
No 112
>COG2181 NarI Nitrate reductase gamma subunit [Energy production and conversion]
Probab=23.80 E-value=68 Score=35.01 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=18.5
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHh
Q 002185 880 IAIVVLSAFVAVVLCSAAAWVLLFK 904 (955)
Q Consensus 880 IAGIVLGSVVlVVLLsAaa~LLLLR 904 (955)
++.|++|+++++++|++++.++++|
T Consensus 87 ~~ai~~G~iaGv~~liG~~~L~~RR 111 (228)
T COG2181 87 LMAIVLGGIAGVLTLIGLTLLLLRR 111 (228)
T ss_pred ceeeehhhHHHHHHHHHHHHHHHHH
Confidence 4566788999999998887555433
No 113
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=23.23 E-value=63 Score=41.48 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=18.4
Q ss_pred cceehhhHHHHHHHHHHHHHHHHHHHhh
Q 002185 878 GMIAIVVLSAFVAVVLCSAAAWVLLFKY 905 (955)
Q Consensus 878 GaIAGIVLGSVVlVVLLsAaa~LLLLRR 905 (955)
.-|-.|++++++++++|+++ +++|||+
T Consensus 976 vp~wiIi~svl~GLLlL~ll-v~~LwK~ 1002 (1030)
T KOG3637|consen 976 VPLWIIILSVLGGLLLLALL-VLLLWKC 1002 (1030)
T ss_pred cceeeehHHHHHHHHHHHHH-HHHHHhc
Confidence 34677777777777666555 5776888
No 114
>PRK01658 holin-like protein; Validated
Probab=22.95 E-value=60 Score=31.97 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=14.6
Q ss_pred cceehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 878 GMIAIVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 878 GaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
..|+++++.+.++++++.+.+.-++.||++|
T Consensus 89 ~~il~~ivvsT~l~l~vtg~~~~~l~~~~~~ 119 (122)
T PRK01658 89 ISLFLVVVISTFVVMIVTGYLTQLLAKRKER 119 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455555545555555555443333444443
No 115
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=22.93 E-value=49 Score=42.19 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=16.9
Q ss_pred ceehhhHHHHHHHHHHHHHHHHHHHhh
Q 002185 879 MIAIVVLSAFVAVVLCSAAAWVLLFKY 905 (955)
Q Consensus 879 aIAGIVLGSVVlVVLLsAaa~LLLLRR 905 (955)
.++++++|++++++++.+...+++.||
T Consensus 629 ~~~~~viG~~Ll~~~~~~~~~~~~~~r 655 (1177)
T KOG1025|consen 629 ATAIAVIGGLLLAFFVFLGFSLYMCRR 655 (1177)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 566777887777766665554554443
No 116
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=22.80 E-value=56 Score=39.18 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=21.6
Q ss_pred CCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 873 YGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 873 kgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
-+.|.++|+|..+++++++.+|++. |+++|+|+
T Consensus 543 ~~~s~~av~gllv~~~~i~tvivis--l~mlrkr~ 575 (615)
T KOG3540|consen 543 VGRSASAVIGLLVSAVFIATVIVIS--LVMLRKRQ 575 (615)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH--HHHHcccc
Confidence 4668889999888777766555443 44455443
No 117
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=22.72 E-value=84 Score=38.44 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=18.2
Q ss_pred CcceehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 877 GGMIAIVVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 877 kGaIAGIVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
...+..++++++++++++++++++++++|||
T Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 655 (968)
T PLN00113 625 TPSWWFYITCTLGAFLVLALVAFGFVFIRGR 655 (968)
T ss_pred cceeeeehhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467777776666666666655555444433
No 118
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.49 E-value=57 Score=32.73 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhhcc
Q 002185 891 VVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 891 VVLLsAaa~LLLLRRRR 907 (955)
.++|++++++|+++++.
T Consensus 49 g~vL~~~g~~~~~~~~~ 65 (191)
T PF04156_consen 49 GVVLLSLGLLCLLSKRP 65 (191)
T ss_pred HHHHHHHHHHHHHHccc
Confidence 34455555555444443
No 119
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=22.47 E-value=98 Score=26.54 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=9.3
Q ss_pred ehhhHHHHHHHHHHHHHH
Q 002185 881 AIVVLSAFVAVVLCSAAA 898 (955)
Q Consensus 881 AGIVLGSVVlVVLLsAaa 898 (955)
.|-.+++++.++++++++
T Consensus 27 lg~~~~~~~~~~~l~~~~ 44 (55)
T PF03988_consen 27 LGYLISTLIFAALLAVVL 44 (55)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 444555555555554443
No 120
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=22.43 E-value=48 Score=28.99 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=9.5
Q ss_pred CCcceehhhHHHHHHHH
Q 002185 876 SGGMIAIVVLSAFVAVV 892 (955)
Q Consensus 876 SkGaIAGIVLGSVVlVV 892 (955)
..++|+.||+|.|++=+
T Consensus 4 ~~wlIIviVlgvIigNi 20 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNI 20 (55)
T ss_pred hhhHHHHHHHHHHHhHH
Confidence 44566666666555433
No 121
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=22.28 E-value=72 Score=30.02 Aligned_cols=21 Identities=5% Similarity=-0.137 Sum_probs=10.4
Q ss_pred cceehhhHHHHHHHHHHHHHH
Q 002185 878 GMIAIVVLSAFVAVVLCSAAA 898 (955)
Q Consensus 878 GaIAGIVLGSVVlVVLLsAaa 898 (955)
.+|.+|+.|..+++.+.+|++
T Consensus 52 i~iS~ias~la~lv~t~~G~g 72 (85)
T TIGR01495 52 ILYSSIASGLALLVGAGVGLG 72 (85)
T ss_pred eehHHHHHHHHHHHHHHHHHh
Confidence 444555555444444555544
No 122
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=21.98 E-value=55 Score=29.93 Aligned_cols=20 Identities=10% Similarity=0.316 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 002185 887 AFVAVVLCSAAAWVLLFKYK 906 (955)
Q Consensus 887 SVVlVVLLsAaa~LLLLRRR 906 (955)
.++.+++++++.+|+++|..
T Consensus 4 ~li~lv~~~~i~yf~~~rpq 23 (82)
T PF02699_consen 4 MLIPLVIIFVIFYFLMIRPQ 23 (82)
T ss_dssp HHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHhhheecHH
Confidence 34444455555555555433
No 123
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=21.83 E-value=57 Score=25.75 Aligned_cols=12 Identities=25% Similarity=0.052 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 002185 891 VVLCSAAAWVLL 902 (955)
Q Consensus 891 VVLLsAaa~LLL 902 (955)
+++|++-.++.+
T Consensus 12 v~lLl~YLvYAL 23 (29)
T PRK14750 12 VLLLLGYLVYAL 23 (29)
T ss_pred HHHHHHHHHHHH
Confidence 333434333443
No 124
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=21.78 E-value=2e+02 Score=32.54 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=33.0
Q ss_pred chHHHHHHHHHhccCcccccEEEeceecCCCCCcEEEEEEeecCCcccchHH
Q 002185 748 PLVSELAGEIAAGVFMKQSQVRIIGANAAEQPDKTVVLTDLVPLGEKFDNTT 799 (955)
Q Consensus 748 Py~SELEsELASgL~L~vSQV~I~Nf~wesgPrkL~VtLdLFPsGdsFNnTE 799 (955)
..+.++...|-..|||+...+.|.--.... .++..|+|+.||..+.+.+-+
T Consensus 248 ~~v~~la~~LR~~lgL~LFgfDvI~~~~t~-~~~~VIDINyFPgY~~vp~f~ 298 (307)
T PF05770_consen 248 ELVEKLAKELRRALGLTLFGFDVIRENGTG-GRYYVIDINYFPGYKKVPDFE 298 (307)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEEEEEGCCT--SSEEEEEEEES--TTTSCTHH
T ss_pred HHHHHHHHHHHHHhCcceeeeEEEEEcCCC-CcEEEEEeccCCCccCCCChH
Confidence 345677778888889988887776433332 367999999999665554433
No 125
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=21.76 E-value=83 Score=27.72 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 002185 882 IVVLSAFVAVVLCSAAAWVLL 902 (955)
Q Consensus 882 GIVLGSVVlVVLLsAaa~LLL 902 (955)
.+.+|.|+++++++.+++.++
T Consensus 9 i~Gm~iVF~~L~lL~~~i~l~ 29 (79)
T PF04277_consen 9 IIGMGIVFLVLILLILVISLM 29 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333555555555555444443
No 126
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=21.71 E-value=72 Score=40.09 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhc
Q 002185 882 IVVLSAFVAVVLCSAAAWVLLFKYK 906 (955)
Q Consensus 882 GIVLGSVVlVVLLsAaa~LLLLRRR 906 (955)
|-++|.++++++|+++. |+++|||
T Consensus 848 ~~i~g~i~iiv~LaAla-~lLrRRr 871 (872)
T COG3889 848 GGICGPIVIIVGLAALA-LLLRRRR 871 (872)
T ss_pred cccchHHHHHHHHHHHH-HHHHhhc
Confidence 33445555555565554 4434443
No 127
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=21.35 E-value=86 Score=24.97 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=16.8
Q ss_pred ceehhhHHHHHHHHHHHHHHHHH
Q 002185 879 MIAIVVLSAFVAVVLCSAAAWVL 901 (955)
Q Consensus 879 aIAGIVLGSVVlVVLLsAaa~LL 901 (955)
.++||++|.+++++.+.+++.++
T Consensus 9 ~W~Gl~~g~~l~~~~~tG~~~~f 31 (37)
T PF13706_consen 9 RWLGLILGLLLFVIFLTGAVMVF 31 (37)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 36788998888877777765443
No 128
>PF12669 P12: Virus attachment protein p12 family
Probab=20.95 E-value=67 Score=28.08 Aligned_cols=8 Identities=13% Similarity=0.015 Sum_probs=3.2
Q ss_pred Hhhccccc
Q 002185 903 FKYKSHAC 910 (955)
Q Consensus 903 LRRRRR~s 910 (955)
++..|+.+
T Consensus 18 r~~~k~~K 25 (58)
T PF12669_consen 18 RKFIKDKK 25 (58)
T ss_pred HHHHHHhh
Confidence 44443433
No 129
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.83 E-value=68 Score=27.28 Aligned_cols=10 Identities=20% Similarity=0.580 Sum_probs=4.1
Q ss_pred CCCcceehhh
Q 002185 875 LSGGMIAIVV 884 (955)
Q Consensus 875 LSkGaIAGIV 884 (955)
++.++++.|+
T Consensus 18 ~pl~l~il~~ 27 (68)
T PF06305_consen 18 LPLGLLILIA 27 (68)
T ss_pred chHHHHHHHH
Confidence 3444444333
No 130
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=20.81 E-value=93 Score=28.91 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhcccccccccC
Q 002185 892 VLCSAAAWVLLFKYKSHACQAEEV 915 (955)
Q Consensus 892 VLLsAaa~LLLLRRRRR~sqa~e~ 915 (955)
+++++.+|++++..||+.+..+|+
T Consensus 20 V~~~~~~wi~~Ra~~~~DKT~~eR 43 (72)
T PF13268_consen 20 VLLVSGIWILWRALRKKDKTAKER 43 (72)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHH
Confidence 344455677766555555555554
No 131
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=20.79 E-value=60 Score=29.37 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=17.2
Q ss_pred CCCCCcceehhhHHHHHHHHHHHHHH
Q 002185 873 YGLSGGMIAIVVLSAFVAVVLCSAAA 898 (955)
Q Consensus 873 kgLSkGaIAGIVLGSVVlVVLLsAaa 898 (955)
+|+...-+.|.++|.++++++++.-+
T Consensus 35 SGv~~~~~~GfaiG~~~AlvLv~ip~ 60 (64)
T PF09472_consen 35 SGVMATGIKGFAIGFLFALVLVGIPI 60 (64)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 45666667888888777666554443
No 132
>PHA03049 IMV membrane protein; Provisional
Probab=20.41 E-value=1.5e+02 Score=27.35 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 002185 886 SAFVAVVLCSAAAW 899 (955)
Q Consensus 886 GSVVlVVLLsAaa~ 899 (955)
|-++++++|++++.
T Consensus 3 ~d~~l~iICVaIi~ 16 (68)
T PHA03049 3 GDIILVIICVVIIG 16 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554443
No 133
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=20.40 E-value=88 Score=34.12 Aligned_cols=21 Identities=5% Similarity=0.129 Sum_probs=9.0
Q ss_pred Ccceeh-hhHHHHHHHHHHHHH
Q 002185 877 GGMIAI-VVLSAFVAVVLCSAA 897 (955)
Q Consensus 877 kGaIAG-IVLGSVVlVVLLsAa 897 (955)
..++|+ |+||++|++-.|+.+
T Consensus 128 ~amLIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLICTLLFL 149 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 344444 335554444333333
No 134
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=20.27 E-value=1.4e+02 Score=25.43 Aligned_cols=10 Identities=40% Similarity=0.840 Sum_probs=5.1
Q ss_pred CCCcceehhh
Q 002185 875 LSGGMIAIVV 884 (955)
Q Consensus 875 LSkGaIAGIV 884 (955)
+-.|+|...+
T Consensus 6 lp~GVIlVF~ 15 (43)
T PF08114_consen 6 LPGGVILVFC 15 (43)
T ss_pred CCCCeeeehH
Confidence 3455665544
No 135
>PF05795 Plasmodium_Vir: Plasmodium vivax Vir protein; InterPro: IPR008780 This family consists of several Vir proteins specific to the genus Plasmodium and Plasmodium vivax in particular. The vir genes are present at about 600-1,000 copies per haploid genome and encode proteins that are immunovariant in natural infections, indicating that they may have a functional role in establishing chronic infection through antigenic variation [].
Probab=20.16 E-value=1.2e+02 Score=32.34 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=9.6
Q ss_pred CCcceehhhHHHHHHHHHHHHHH
Q 002185 876 SGGMIAIVVLSAFVAVVLCSAAA 898 (955)
Q Consensus 876 SkGaIAGIVLGSVVlVVLLsAaa 898 (955)
....|.+++ +++++++.+.+++
T Consensus 277 ~s~~~~~~v-~~~~~~~G~~~~~ 298 (354)
T PF05795_consen 277 ISNPFSTSV-SPVLSVLGIPLIF 298 (354)
T ss_pred cCcccccch-hhhhhhHHHHHHH
Confidence 334455544 3444444444443
Done!