Query 002185
Match_columns 955
No_of_seqs 146 out of 247
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 16:00:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k1k_A Ephrin type-A receptor 97.7 1.1E-05 3.9E-10 62.9 2.2 34 871-905 4-37 (38)
2 2l2t_A Receptor tyrosine-prote 97.0 0.00042 1.4E-08 55.9 3.6 35 874-908 6-40 (44)
3 2ks1_B Epidermal growth factor 96.9 0.00076 2.6E-08 54.3 3.9 33 875-908 8-40 (44)
4 2jwa_A Receptor tyrosine-prote 95.4 0.0083 2.8E-07 48.5 2.8 29 878-908 12-40 (44)
5 2l34_A TYRO protein tyrosine k 93.6 0.038 1.3E-06 42.2 2.6 25 874-898 3-27 (33)
6 2klu_A T-cell surface glycopro 93.4 0.057 2E-06 47.2 3.8 31 883-913 12-42 (70)
7 2k9y_A Ephrin type-A receptor 92.6 0.061 2.1E-06 41.4 2.5 16 880-895 12-27 (41)
8 2ks1_B Epidermal growth factor 86.0 0.57 2E-05 37.8 3.4 36 877-913 7-42 (44)
9 2l8s_A Integrin alpha-1; trans 85.9 0.69 2.4E-05 38.9 3.9 39 875-913 7-45 (54)
10 2l2t_A Receptor tyrosine-prote 83.8 1 3.5E-05 36.5 4.0 34 880-913 9-42 (44)
11 2knc_B Integrin beta-3; transm 81.7 0.69 2.4E-05 40.9 2.4 20 875-894 8-27 (79)
12 2knc_A Integrin alpha-IIB; tra 81.6 1 3.6E-05 37.8 3.3 36 873-908 8-43 (54)
13 1cd1_A CD1, MCD1D.1; immunolog 76.1 0.54 1.8E-05 49.0 0.0 26 882-908 285-310 (315)
14 1iij_A ERBB-2 receptor protein 75.1 0.64 2.2E-05 36.2 0.2 26 880-907 10-35 (35)
15 2knc_B Integrin beta-3; transm 75.1 2.1 7.2E-05 37.9 3.5 25 879-904 9-33 (79)
16 1s7q_A H-2KB, H-2 class I hist 70.9 0.86 2.9E-05 48.5 0.0 29 876-904 279-309 (348)
17 1afo_A Glycophorin A; integral 69.4 4.8 0.00016 32.2 3.9 33 875-907 7-39 (40)
18 1q55_A EP-cadherin, C-cadherin 68.7 1 3.5E-05 53.4 0.0 23 872-894 699-721 (880)
19 2k9j_B Integrin beta-3; transm 67.1 2.3 7.7E-05 34.0 1.7 23 877-899 9-31 (43)
20 2llm_A Amyloid beta A4 protein 69.6 1.2 4.2E-05 36.0 0.0 31 874-906 13-43 (43)
21 2k1a_A Integrin alpha-IIB; sin 62.6 3.4 0.00012 33.1 1.9 22 875-896 8-29 (42)
22 2k9j_B Integrin beta-3; transm 61.5 4.1 0.00014 32.5 2.2 27 880-907 9-35 (43)
23 2k1k_A Ephrin type-A receptor 55.5 14 0.00049 28.8 4.3 35 874-908 3-37 (38)
24 2k9y_A Ephrin type-A receptor 46.3 4.4 0.00015 31.0 0.1 28 874-901 9-36 (41)
25 2l8s_A Integrin alpha-1; trans 45.9 22 0.00075 30.0 4.2 33 879-912 8-40 (54)
26 2knc_A Integrin alpha-IIB; tra 38.7 31 0.0011 29.0 4.1 34 878-912 10-43 (54)
27 2l35_A DAP12-NKG2C_TM; immunor 33.6 23 0.00078 30.8 2.5 28 875-903 4-31 (63)
28 1q55_A EP-cadherin, C-cadherin 33.3 8.9 0.00031 45.6 0.0 28 875-902 698-725 (880)
29 2k1a_A Integrin alpha-IIB; sin 31.8 50 0.0017 26.5 4.0 29 876-905 6-34 (42)
30 2lp1_A C99; alzheimer'S D memb 35.6 11 0.00039 36.0 0.0 21 874-894 26-46 (122)
31 1q90_G Cytochrome B6F complex 28.3 47 0.0016 26.4 3.2 15 879-893 5-19 (37)
32 4ew7_A Conjugative transfer: r 24.8 80 0.0027 30.2 4.7 29 763-791 98-126 (127)
33 2l6w_A Beta-type platelet-deri 30.3 16 0.00054 29.2 0.0 10 899-908 28-37 (39)
34 1pi7_A VPU protein, U ORF prot 23.8 53 0.0018 25.7 2.8 18 888-905 11-28 (36)
35 2k9p_A Pheromone alpha factor 22.8 54 0.0018 29.3 3.0 19 879-897 19-37 (80)
36 1vf5_G Protein PET G; photosyn 22.1 45 0.0015 26.4 2.1 14 879-892 5-18 (37)
37 1fgj_A Hydroxylamine oxidoredu 22.0 19 0.00065 41.1 0.0 27 883-909 518-544 (546)
No 1
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=97.72 E-value=1.1e-05 Score=62.85 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=27.4
Q ss_pred ccCCCCCcceehhhHHHHHHHHHHHHHHHHHHHhh
Q 002185 871 QKYGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKY 905 (955)
Q Consensus 871 kKkgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRR 905 (955)
.++++|.|+|+|||+|+++++++++++++|+ +||
T Consensus 4 ~~~~ls~GaIAGiVvG~v~gv~li~~l~~~~-~rr 37 (38)
T 2k1k_A 4 VSRGLTGGEIVAVIFGLLLGAALLLGILVFR-SRR 37 (38)
T ss_dssp SSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCC
T ss_pred CCCCCCCCceeeeehHHHHHHHHHHHHHHHH-eec
Confidence 3678999999999999999988887776554 443
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=97.03 E-value=0.00042 Score=55.92 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=25.4
Q ss_pred CCCCcceehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 874 GLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 874 gLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
+.+.+.|++.|+|++++++++++++||++.|||++
T Consensus 6 ~s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44778899999999998888887766664443333
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=96.88 E-value=0.00076 Score=54.33 Aligned_cols=33 Identities=9% Similarity=0.095 Sum_probs=24.4
Q ss_pred CCCcceehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 875 LSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 875 LSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
.+.+.||+.|+|++++++++++++||+ +|||++
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~~-~RRr~~ 40 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGLF-MRRRHI 40 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHHH-HHTTTC
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHHH-hhhhHh
Confidence 467889999999998888887766565 444443
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=95.38 E-value=0.0083 Score=48.52 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=17.8
Q ss_pred cceehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 878 GMIAIVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 878 GaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
..|+++|+| +++ ++++++++++++|||+.
T Consensus 12 ~~Ia~~vVG-vll-~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 12 TSIISAVVG-ILL-VVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHH-HHH-HHHHHHHHHHHHHHHCS
T ss_pred cchHHHHHH-HHH-HHHHHHHHHhheehhhh
Confidence 358999999 444 44445555665666654
No 5
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=93.61 E-value=0.038 Score=42.21 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=20.8
Q ss_pred CCCCcceehhhHHHHHHHHHHHHHH
Q 002185 874 GLSGGMIAIVVLSAFVAVVLCSAAA 898 (955)
Q Consensus 874 gLSkGaIAGIVLGSVVlVVLLsAaa 898 (955)
+++.|.|+||++|.+++++++.+++
T Consensus 3 ~L~~gaIaGIVvgdi~~t~~i~~~v 27 (33)
T 2l34_A 3 TVSPGVLAGIVVGDLVLTVLIALAV 27 (33)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcceEEeEeHHHHHHHHHHHHHH
Confidence 4789999999999999888766654
No 6
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=93.44 E-value=0.057 Score=47.23 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 002185 883 VVLSAFVAVVLCSAAAWVLLFKYKSHACQAE 913 (955)
Q Consensus 883 IVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~ 913 (955)
||||++++++++.++.+||..|++.|.++++
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrqAe 42 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQAE 42 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSSCT
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8999999999999999997787777777664
No 7
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=92.59 E-value=0.061 Score=41.41 Aligned_cols=16 Identities=31% Similarity=0.139 Sum_probs=7.3
Q ss_pred eehhhHHHHHHHHHHH
Q 002185 880 IAIVVLSAFVAVVLCS 895 (955)
Q Consensus 880 IAGIVLGSVVlVVLLs 895 (955)
+++|++|+++++++++
T Consensus 12 ~~~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 12 NLAVIGGVAVGVVLLL 27 (41)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred eEEEEeehhHHHHHHH
Confidence 3444444444444444
No 8
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=85.98 E-value=0.57 Score=37.82 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=25.7
Q ss_pred CcceehhhHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 002185 877 GGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAE 913 (955)
Q Consensus 877 kGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~ 913 (955)
..-+.+|++|.+.+++++++++ ++++-..||+++.+
T Consensus 7 ~s~~~~IA~gVVgGv~~~~ii~-~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 7 GPKIPSIATGMVGALLLLLVVA-LGIGLFMRRRHIVR 42 (44)
T ss_dssp CSCSSSSTHHHHHHHHHHHHHH-HHHHHHHHTTTCCS
T ss_pred CCCcceEEeehhHHHHHHHHHH-HHHHHHhhhhHhhc
Confidence 3456678887777777766554 77788888887754
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=85.86 E-value=0.69 Score=38.94 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=24.0
Q ss_pred CCCcceehhhHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 002185 875 LSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAE 913 (955)
Q Consensus 875 LSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~ 913 (955)
...++|++.++|+++++++++.+.|-|-|-+|++..+.+
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~~~~ 45 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKKME 45 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcchhh
Confidence 456677777777777766666666666554455544433
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=83.81 E-value=1 Score=36.46 Aligned_cols=34 Identities=0% Similarity=0.077 Sum_probs=25.5
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHhhcccccccc
Q 002185 880 IAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQAE 913 (955)
Q Consensus 880 IAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa~ 913 (955)
..+|+.|.+.+++++++++.++++-.|||+.+.+
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred cceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 4567787777788888888777778887777653
No 11
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=81.69 E-value=0.69 Score=40.93 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=8.4
Q ss_pred CCCcceehhhHHHHHHHHHH
Q 002185 875 LSGGMIAIVVLSAFVAVVLC 894 (955)
Q Consensus 875 LSkGaIAGIVLGSVVlVVLL 894 (955)
.+..+|+|-++|+++++.++
T Consensus 8 ~n~~~Iv~gvi~gilliGll 27 (79)
T 2knc_B 8 PDILVVLLSVMGAILLIGLA 27 (79)
T ss_dssp SCSHHHHHHHHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 12
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=81.60 E-value=1 Score=37.79 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=23.2
Q ss_pred CCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 873 YGLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 873 kgLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
.+.-.++|++.++|+++++++++.+.|-|-|-+|++
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCC
Confidence 345667777777777777777777766655544443
No 13
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=76.11 E-value=0.54 Score=48.98 Aligned_cols=26 Identities=15% Similarity=0.493 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 882 IVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 882 GIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
+|++|+++++++|++++++| ++||++
T Consensus 285 ~i~~~vi~~l~ll~~~~~~~-~~~~~~ 310 (315)
T 1cd1_A 285 LIVFIVLIMLVVVGAVVYYI-WRRRSA 310 (315)
T ss_dssp ---------------------------
T ss_pred eeehhHHHHHHHHHHHHHhh-eehhcC
Confidence 44444444444444443344 343333
No 14
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=75.10 E-value=0.64 Score=36.21 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=12.9
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 880 IAIVVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 880 IAGIVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
|+..++| +++++++.+.+ .+++|||+
T Consensus 10 IaagVvg-lll~vii~l~~-~~~iRRr~ 35 (35)
T 1iij_A 10 IIATVVG-VLLFLILVVVV-GILIKRRR 35 (35)
T ss_dssp HHHHHHH-HHHHHHHTTTT-THHHHHCC
T ss_pred eHHHHHH-HHHHHHHHHHh-heEEeecC
Confidence 4455666 44444444443 44455553
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=75.07 E-value=2.1 Score=37.88 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=15.9
Q ss_pred ceehhhHHHHHHHHHHHHHHHHHHHh
Q 002185 879 MIAIVVLSAFVAVVLCSAAAWVLLFK 904 (955)
Q Consensus 879 aIAGIVLGSVVlVVLLsAaa~LLLLR 904 (955)
-|++||+|++++ ++|++++++|+||
T Consensus 9 n~~~Iv~gvi~g-illiGllllliwk 33 (79)
T 2knc_B 9 DILVVLLSVMGA-ILLIGLAALLIWK 33 (79)
T ss_dssp CSHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred CchhhHHHHHHH-HHHHHHHHHHHHH
Confidence 466777665555 5566666677776
No 16
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=70.89 E-value=0.86 Score=48.52 Aligned_cols=29 Identities=10% Similarity=-0.128 Sum_probs=0.0
Q ss_pred CCcceehhhHHHHHHHHH-HHH-HHHHHHHh
Q 002185 876 SGGMIAIVVLSAFVAVVL-CSA-AAWVLLFK 904 (955)
Q Consensus 876 SkGaIAGIVLGSVVlVVL-LsA-aa~LLLLR 904 (955)
+...|+||++|.++++++ +++ ++.++++|
T Consensus 279 ~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 309 (348)
T 1s7q_A 279 STVSNMATVAVLVVLGAAIVTGAVVAFVMKM 309 (348)
T ss_dssp -------------------------------
T ss_pred CcccEEEEEeehhhHHHHhhheeEEEEEEEE
Confidence 456678888876554332 222 22344455
No 17
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=69.44 E-value=4.8 Score=32.25 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=25.8
Q ss_pred CCCcceehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 875 LSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 875 LSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
++.-.|++|++|..++++...+++.||+.|-+|
T Consensus 7 fs~p~i~lII~~vmaGiIG~IllI~y~I~rl~K 39 (40)
T 1afo_A 7 FSEPEITLIIFGVMAGVIGTILLISYGIRRLIK 39 (40)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455588999999988888888887788766554
No 18
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=68.74 E-value=1 Score=53.43 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred cCCCCCcceehhhHHHHHHHHHH
Q 002185 872 KYGLSGGMIAIVVLSAFVAVVLC 894 (955)
Q Consensus 872 KkgLSkGaIAGIVLGSVVlVVLL 894 (955)
..+++.++|++|++|.+++++++
T Consensus 699 ~~~l~~~aii~il~~~~~ll~~~ 721 (880)
T 1q55_A 699 VGGFDLPIILVILGSVLALLILF 721 (880)
T ss_dssp -----------------------
T ss_pred ccCccHHHHHHHHHHHHHHHHHH
Confidence 45788888888877665544433
No 19
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=67.12 E-value=2.3 Score=34.02 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=8.8
Q ss_pred CcceehhhHHHHHHHHHHHHHHH
Q 002185 877 GGMIAIVVLSAFVAVVLCSAAAW 899 (955)
Q Consensus 877 kGaIAGIVLGSVVlVVLLsAaa~ 899 (955)
..+|++-++|+++++-++++++|
T Consensus 9 ~~~Iv~gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 9 ILVVLLSVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHHHHHHHH
Confidence 33444333434333333333333
No 20
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=69.57 E-value=1.2 Score=36.05 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=19.7
Q ss_pred CCCCcceehhhHHHHHHHHHHHHHHHHHHHhhc
Q 002185 874 GLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYK 906 (955)
Q Consensus 874 gLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRR 906 (955)
+.|+|+++|+.++++++..+++.. ++++|||
T Consensus 13 ~~srga~iGL~v~gVai~~vIVvs--l~mlRrr 43 (43)
T 2llm_A 13 GSNKGAIIGLMVGGVVIATVIVIT--LVMLKKK 43 (43)
Confidence 348899999998777665554433 3334543
No 21
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=62.64 E-value=3.4 Score=33.13 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=9.4
Q ss_pred CCCcceehhhHHHHHHHHHHHH
Q 002185 875 LSGGMIAIVVLSAFVAVVLCSA 896 (955)
Q Consensus 875 LSkGaIAGIVLGSVVlVVLLsA 896 (955)
.-.++|++.++|+++++++++.
T Consensus 8 vp~wiIi~s~l~GLllL~li~~ 29 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVL 29 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333
No 22
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=61.52 E-value=4.1 Score=32.51 Aligned_cols=27 Identities=30% Similarity=0.408 Sum_probs=17.9
Q ss_pred eehhhHHHHHHHHHHHHHHHHHHHhhcc
Q 002185 880 IAIVVLSAFVAVVLCSAAAWVLLFKYKS 907 (955)
Q Consensus 880 IAGIVLGSVVlVVLLsAaa~LLLLRRRR 907 (955)
+.+|++| +++.+++++++++++||..-
T Consensus 9 ~~~Iv~g-vi~~ivliGl~lLliwk~~~ 35 (43)
T 2k9j_B 9 ILVVLLS-VMGAILLIGLAALLIWKLLI 35 (43)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4555555 55556777888888887643
No 23
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=55.53 E-value=14 Score=28.82 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=25.8
Q ss_pred CCCCcceehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 874 GLSGGMIAIVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 874 gLSkGaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
.-+.++-.|.+.|.++++++-++++..+++...||
T Consensus 3 ~~~~~ls~GaIAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 3 PVSRGLTGGEIVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp SSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCceeeeehHHHHHHHHHHHHHHHHeec
Confidence 34566777888888888887777777777777665
No 24
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=46.31 E-value=4.4 Score=31.04 Aligned_cols=28 Identities=11% Similarity=0.137 Sum_probs=18.5
Q ss_pred CCCCcceehhhHHHHHHHHHHHHHHHHH
Q 002185 874 GLSGGMIAIVVLSAFVAVVLCSAAAWVL 901 (955)
Q Consensus 874 gLSkGaIAGIVLGSVVlVVLLsAaa~LL 901 (955)
+.+...|+|.+++++++++++++++|++
T Consensus 9 ~~~~~~I~~~vv~Gv~ll~~iv~~~~~~ 36 (41)
T 2k9y_A 9 GSGNLAVIGGVAVGVVLLLVLAGVGFFI 36 (41)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCceEEEEeehhHHHHHHHHHHHHheeE
Confidence 3456777888878878888555554433
No 25
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=45.91 E-value=22 Score=30.05 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=18.6
Q ss_pred ceehhhHHHHHHHHHHHHHHHHHHHhhccccccc
Q 002185 879 MIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQA 912 (955)
Q Consensus 879 aIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa 912 (955)
.|-.|+++++.++++| +++++++||+.--+++.
T Consensus 8 p~WiIi~svl~GLLLL-~Lii~~LwK~GFFKR~~ 40 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLL-MLLILALWKIGFFKRPL 40 (54)
T ss_dssp CTHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCC
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHcCcccCCC
Confidence 3445566555555555 44556767776544444
No 26
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=38.71 E-value=31 Score=29.02 Aligned_cols=34 Identities=12% Similarity=0.042 Sum_probs=19.3
Q ss_pred cceehhhHHHHHHHHHHHHHHHHHHHhhccccccc
Q 002185 878 GMIAIVVLSAFVAVVLCSAAAWVLLFKYKSHACQA 912 (955)
Q Consensus 878 GaIAGIVLGSVVlVVLLsAaa~LLLLRRRRR~sqa 912 (955)
..+-.|+++++.++++|++ ++++++|+.--+++.
T Consensus 10 vp~wiIi~svl~GLllL~l-i~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTI-LVLAMWKVGFFKRNR 43 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTTTC
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHHHHcCcccCCC
Confidence 3455566666666555554 456667766544443
No 27
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=33.62 E-value=23 Score=30.80 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=20.8
Q ss_pred CCCcceehhhHHHHHHHHHHHHHHHHHHH
Q 002185 875 LSGGMIAIVVLSAFVAVVLCSAAAWVLLF 903 (955)
Q Consensus 875 LSkGaIAGIVLGSVVlVVLLsAaa~LLLL 903 (955)
++.+.++||++|=+++.++++..+ ||+-
T Consensus 4 Ld~~tvaGIIv~DIi~TllLal~V-Y~~A 31 (63)
T 2l35_A 4 VSPGVLAGIVVGDLVLTVLIALAV-YFLG 31 (63)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHH-HHHC
T ss_pred ccchheehhHHHHHHHHHHHHHHH-Hhhc
Confidence 567899999999888877765554 5543
No 28
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=33.33 E-value=8.9 Score=45.57 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCCcceehhhHHHHHHHHHHHHHHHHHH
Q 002185 875 LSGGMIAIVVLSAFVAVVLCSAAAWVLL 902 (955)
Q Consensus 875 LSkGaIAGIVLGSVVlVVLLsAaa~LLL 902 (955)
+..|+-.+++++.++++++|++++++++
T Consensus 698 ~~~~l~~~aii~il~~~~~ll~~~ll~~ 725 (880)
T 1q55_A 698 LVGGFDLPIILVILGSVLALLILFLLLL 725 (880)
T ss_dssp ----------------------------
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777766655543
No 29
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=31.78 E-value=50 Score=26.49 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=17.0
Q ss_pred CCcceehhhHHHHHHHHHHHHHHHHHHHhh
Q 002185 876 SGGMIAIVVLSAFVAVVLCSAAAWVLLFKY 905 (955)
Q Consensus 876 SkGaIAGIVLGSVVlVVLLsAaa~LLLLRR 905 (955)
....+-.|+++++.++++|+++ +++++|+
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li-~~~LwK~ 34 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTIL-VLAMWKV 34 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred CCcchHHHHHHHHHHHHHHHHH-HHHHHHc
Confidence 3444556667666666666555 4665654
No 30
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=35.61 E-value=11 Score=36.04 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=14.9
Q ss_pred CCCCcceehhhHHHHHHHHHH
Q 002185 874 GLSGGMIAIVVLSAFVAVVLC 894 (955)
Q Consensus 874 gLSkGaIAGIVLGSVVlVVLL 894 (955)
+.|+++++|+.+|++++++++
T Consensus 26 ~~~~~a~igL~v~~vai~~vi 46 (122)
T 2lp1_A 26 GSNKGAIIGLMVGGVVIATVI 46 (122)
Confidence 447788999888776655544
No 31
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=28.34 E-value=47 Score=26.35 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=9.6
Q ss_pred ceehhhHHHHHHHHH
Q 002185 879 MIAIVVLSAFVAVVL 893 (955)
Q Consensus 879 aIAGIVLGSVVlVVL 893 (955)
+..|||+|.+-..++
T Consensus 5 lL~GIVlGlipvtla 19 (37)
T 1q90_G 5 LLCGIVLGLVPVTIA 19 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHHHHHH
Confidence 345888887665443
No 32
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=24.78 E-value=80 Score=30.17 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=25.3
Q ss_pred cccccEEEeceecCCCCCcEEEEEEeecC
Q 002185 763 MKQSQVRIIGANAAEQPDKTVVLTDLVPL 791 (955)
Q Consensus 763 L~vSQV~I~Nf~wesgPrkL~VtLdLFPs 791 (955)
-..+|+++.+..+.++..++.|.|+|||.
T Consensus 98 ~e~yQIRmE~iSf~~~e~~~lWQiNlf~d 126 (127)
T 4ew7_A 98 GEIYQIRMENISFDNNEIIVLWQINLFPD 126 (127)
T ss_dssp TEEEEEEEEEEECTTCCEEEEEEEEECC-
T ss_pred CceEEEEEEEeeecCCceEEEEEeeeecc
Confidence 46899999999999988889999999983
No 33
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=30.35 E-value=16 Score=29.25 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=4.5
Q ss_pred HHHHHhhccc
Q 002185 899 WVLLFKYKSH 908 (955)
Q Consensus 899 ~LLLLRRRRR 908 (955)
.+++||||-|
T Consensus 28 Li~~w~qKPr 37 (39)
T 2l6w_A 28 LIMLWQKKPR 37 (39)
Confidence 3444555444
No 34
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=23.83 E-value=53 Score=25.72 Aligned_cols=18 Identities=11% Similarity=0.462 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 002185 888 FVAVVLCSAAAWVLLFKY 905 (955)
Q Consensus 888 VVlVVLLsAaa~LLLLRR 905 (955)
++.++++..++|.+.++.
T Consensus 11 livalIiaIVVWtiv~ie 28 (36)
T 1pi7_A 11 LVVAIIIAIVVWSIVIIE 28 (36)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444555544433
No 35
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=22.76 E-value=54 Score=29.28 Aligned_cols=19 Identities=0% Similarity=0.015 Sum_probs=9.4
Q ss_pred ceehhhHHHHHHHHHHHHH
Q 002185 879 MIAIVVLSAFVAVVLCSAA 897 (955)
Q Consensus 879 aIAGIVLGSVVlVVLLsAa 897 (955)
+-.||+-|+=+++.+++++
T Consensus 19 ~~~~I~~G~~iGAs~llli 37 (80)
T 2k9p_A 19 VTQAILFGVRSGAAALTLI 37 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445666655555444333
No 36
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=22.14 E-value=45 Score=26.45 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=7.1
Q ss_pred ceehhhHHHHHHHH
Q 002185 879 MIAIVVLSAFVAVV 892 (955)
Q Consensus 879 aIAGIVLGSVVlVV 892 (955)
+..|||+|.+-..+
T Consensus 5 lL~GIVlGlipvtl 18 (37)
T 1vf5_G 5 LLDGLVLGLVFATL 18 (37)
T ss_dssp ----CHHHHHHHHH
T ss_pred hhhhHHHhhHHHHH
Confidence 45689998766544
No 37
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A {Nitrosomonas europaea} SCOP: a.138.1.3
Probab=21.98 E-value=19 Score=41.06 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccc
Q 002185 883 VVLSAFVAVVLCSAAAWVLLFKYKSHA 909 (955)
Q Consensus 883 IVLGSVVlVVLLsAaa~LLLLRRRRR~ 909 (955)
.++|++.++++|++++.+++||+|++.
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (546)
T 1fgj_A 518 ISLGGLGGGMLLAGALALIGWRKRKQT 544 (546)
T ss_dssp ---------------------------
T ss_pred ccccchhHHHHHHHHHHHHHHHhhhhh
Confidence 445666666666666666667776653
Done!