Query 002185
Match_columns 955
No_of_seqs 146 out of 247
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 16:01:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002185.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002185hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ijba_ c.62.1.1 (A:) von Will 46.3 35 0.0026 30.3 8.7 74 725-806 6-84 (202)
2 d2iuba2 f.17.3.1 (A:286-349) M 22.1 18 0.0013 28.1 1.9 8 900-907 57-64 (64)
3 d1xn9a_ d.12.1.3 (A:) Ribosoma 13.8 2.4E+02 0.018 23.8 7.4 42 747-788 29-70 (101)
4 d1y5ic1 f.21.3.1 (C:1-225) Res 11.4 57 0.0041 30.3 2.7 28 881-908 89-116 (225)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 10.7 1.3E+02 0.0093 24.7 4.5 11 899-909 48-58 (100)
6 d1ywxa1 d.12.1.3 (A:1-102) Rib 10.6 3.3E+02 0.024 23.0 7.2 43 747-789 29-71 (102)
7 d1n1ua_ g.3.3.1 (A:) Kalata B1 10.4 54 0.004 22.9 1.6 10 726-735 14-23 (29)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 10.3 25 0.0018 29.2 -0.3 13 898-910 36-48 (91)
9 d2v94a1 d.12.1.3 (A:1-93) Ribo 10.2 3.9E+02 0.029 22.1 7.5 42 748-789 31-72 (93)
10 d1t0aa_ d.79.5.1 (A:) 2C-methy 10.0 1.4E+02 0.011 27.0 4.9 43 733-777 95-137 (158)
No 1
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.30 E-value=35 Score=30.34 Aligned_cols=74 Identities=8% Similarity=0.095 Sum_probs=46.1
Q ss_pred CCcccccceEEEEEEecccc---CCcchHHHHHHHHHhccCcccc--cEEEeceecCCCCCcEEEEEEeecCCcccchHH
Q 002185 725 SPCGCVWPMQVGLRLSVALY---TFFPLVSELAGEIAAGVFMKQS--QVRIIGANAAEQPDKTVVLTDLVPLGEKFDNTT 799 (955)
Q Consensus 725 spC~CVyPItV~LRLRSPSF---SfFPy~SELEsELASgL~L~vS--QV~I~Nf~wesgPrkL~VtLdLFPsGdsFNnTE 799 (955)
..|.|..++-+.|.|..-.. ..|.++.+|...+.+.|.+..+ ||.|..| ... ... +|...+..+..+
T Consensus 6 ~~~~C~~~~Dl~fvlD~S~S~~~~~f~~~k~fv~~~i~~l~~~~~~~rvavv~y--~~~---~~~---~~~l~~~~~~~~ 77 (202)
T d1ijba_ 6 HDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEY--HDG---SHA---YIGLKDRKRPSE 77 (202)
T ss_dssp SSCCBCSCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEE--SSS---EEE---EECTTCCCCHHH
T ss_pred CCcCCCCCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEE--ecc---eee---ecCCcccchHHH
Confidence 47999999988888885432 3355677888889988876554 5555544 222 222 345555555565
Q ss_pred HHHHHHH
Q 002185 800 AFLTYQR 806 (955)
Q Consensus 800 AsrI~sr 806 (955)
+.+....
T Consensus 78 l~~~i~~ 84 (202)
T d1ijba_ 78 LRRIASQ 84 (202)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 5555444
No 2
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=22.10 E-value=18 Score=28.10 Aligned_cols=8 Identities=50% Similarity=0.692 Sum_probs=3.8
Q ss_pred HHHHhhcc
Q 002185 900 VLLFKYKS 907 (955)
Q Consensus 900 LLLLRRRR 907 (955)
++++||||
T Consensus 57 ~~~f~rkk 64 (64)
T d2iuba2 57 VVYFKKKK 64 (64)
T ss_dssp HTTTTSCC
T ss_pred HHHHhccC
Confidence 44455553
No 3
>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]}
Probab=13.84 E-value=2.4e+02 Score=23.81 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=33.4
Q ss_pred cchHHHHHHHHHhccCcccccEEEeceecCCCCCcEEEEEEe
Q 002185 747 FPLVSELAGEIAAGVFMKQSQVRIIGANAAEQPDKTVVLTDL 788 (955)
Q Consensus 747 FPy~SELEsELASgL~L~vSQV~I~Nf~wesgPrkL~VtLdL 788 (955)
.+-..++.+.||..++.+.+.|.|.++.-..|-....-...|
T Consensus 29 Tpsr~ei~~kla~~~~~~~~~vvv~~~~t~fG~~~stG~a~I 70 (101)
T d1xn9a_ 29 TPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL 70 (101)
T ss_dssp CCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred CCCHHHHHHHHHHhHCcCcCEEEEEcCcccCCCceEEEEEEE
Confidence 366788999999999999999999999877765655554444
No 4
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=11.42 E-value=57 Score=30.29 Aligned_cols=28 Identities=11% Similarity=-0.011 Sum_probs=18.5
Q ss_pred ehhhHHHHHHHHHHHHHHHHHHHhhccc
Q 002185 881 AIVVLSAFVAVVLCSAAAWVLLFKYKSH 908 (955)
Q Consensus 881 AGIVLGSVVlVVLLsAaa~LLLLRRRRR 908 (955)
...++|.++++++++++++++++|...+
T Consensus 89 ~~~~~g~i~g~l~liG~~~ll~RR~~~~ 116 (225)
T d1y5ic1 89 MAMFAGGASGVLCLIGGVLLLKRRLFSP 116 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456778888888888876665444433
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.66 E-value=1.3e+02 Score=24.74 Aligned_cols=11 Identities=0% Similarity=0.335 Sum_probs=5.6
Q ss_pred HHHHHhhcccc
Q 002185 899 WVLLFKYKSHA 909 (955)
Q Consensus 899 ~LLLLRRRRR~ 909 (955)
+++++|+|+|+
T Consensus 48 ~~~~~~~r~~~ 58 (100)
T d3dtub2 48 LYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHBTTT
T ss_pred HHHhhhhhccC
Confidence 34445666543
No 6
>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]}
Probab=10.56 E-value=3.3e+02 Score=23.05 Aligned_cols=43 Identities=5% Similarity=-0.019 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHhccCcccccEEEeceecCCCCCcEEEEEEee
Q 002185 747 FPLVSELAGEIAAGVFMKQSQVRIIGANAAEQPDKTVVLTDLV 789 (955)
Q Consensus 747 FPy~SELEsELASgL~L~vSQV~I~Nf~wesgPrkL~VtLdLF 789 (955)
.+-..++.+.||..++.+.+.|.|.++.-..|-....-...||
T Consensus 29 Tpsr~ei~~kla~~~~~~~~~vvv~~~~t~fG~~~stG~a~IY 71 (102)
T d1ywxa1 29 TPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKIY 71 (102)
T ss_dssp CCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHCcCcCEEEEEcCEecCCCCeEEEEEEEE
Confidence 3667889999999999999999999998777666555555554
No 7
>d1n1ua_ g.3.3.1 (A:) Kalata B1 {African plant (Oldenlandia affinis) [TaxId: 60225]}
Probab=10.41 E-value=54 Score=22.90 Aligned_cols=10 Identities=30% Similarity=0.976 Sum_probs=8.4
Q ss_pred CcccccceEE
Q 002185 726 PCGCVWPMQV 735 (955)
Q Consensus 726 pC~CVyPItV 735 (955)
.|.|.|||--
T Consensus 14 gctcswpict 23 (29)
T d1n1ua_ 14 GATCSWPVCT 23 (29)
T ss_dssp TCEEETTEEE
T ss_pred Cceeecceec
Confidence 5999999864
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=10.30 E-value=25 Score=29.16 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=7.1
Q ss_pred HHHHHHhhccccc
Q 002185 898 AWVLLFKYKSHAC 910 (955)
Q Consensus 898 a~LLLLRRRRR~s 910 (955)
.+++++|+|+|+.
T Consensus 36 ~~~~~~ryR~~~~ 48 (91)
T d1fftb2 36 AVGFAWKYRASNK 48 (91)
T ss_dssp HHTTTTTTTTSTT
T ss_pred HHhhheeeeccCC
Confidence 3455567665543
No 9
>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]}
Probab=10.19 E-value=3.9e+02 Score=22.10 Aligned_cols=42 Identities=12% Similarity=0.043 Sum_probs=33.5
Q ss_pred chHHHHHHHHHhccCcccccEEEeceecCCCCCcEEEEEEee
Q 002185 748 PLVSELAGEIAAGVFMKQSQVRIIGANAAEQPDKTVVLTDLV 789 (955)
Q Consensus 748 Py~SELEsELASgL~L~vSQV~I~Nf~wesgPrkL~VtLdLF 789 (955)
+-..++.+.||..|+.+.+.|.|.++.-..|-....-...|+
T Consensus 31 psr~ei~~kla~~~~~~~~~vvv~~~~t~fG~~~stG~a~IY 72 (93)
T d2v94a1 31 PSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKYY 72 (93)
T ss_dssp CCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEeCccCCCCceEEEEEEEE
Confidence 667899999999999999999999998776666555554443
No 10
>d1t0aa_ d.79.5.1 (A:) 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF {Shewanella oneidensis [TaxId: 70863]}
Probab=10.00 E-value=1.4e+02 Score=27.03 Aligned_cols=43 Identities=9% Similarity=0.240 Sum_probs=0.0
Q ss_pred eEEEEEEeccccCCcchHHHHHHHHHhccCcccccEEEeceecCC
Q 002185 733 MQVGLRLSVALYTFFPLVSELAGEIAAGVFMKQSQVRIIGANAAE 777 (955)
Q Consensus 733 ItV~LRLRSPSFSfFPy~SELEsELASgL~L~vSQV~I~Nf~wes 777 (955)
+-+.+.+..| ..-+|..+++++|++-|+++.+||.|..-+-+.
T Consensus 95 iD~tIi~e~P--Ki~p~~~~m~~~la~~L~i~~~~IsIKAtT~E~ 137 (158)
T d1t0aa_ 95 LDVTIIAQAP--KMAPHIEDMRQVLAADLNADVADINVKATTTEK 137 (158)
T ss_dssp EEEEEECSSS--CCGGGHHHHHHHHHHHTTCCGGGEEEEEECCTT
T ss_pred eehhhhhhhh--hhhHHHHHHHHHHHHHhCCCcccEEEEEecCCC
Done!