BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002187
(955 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 148/348 (42%), Gaps = 54/348 (15%)
Query: 186 KKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK-FEKRM-WICVS 243
+K+LVN + + SK + P +++ GM G GK+ LA A + + + F + W+ V
Sbjct: 129 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 188
Query: 244 ELFDEFRIARAIIEALTGSASNFGEFQSLMQ----HIQECVQRKKF---------LLVLD 290
+ + ++ L + + +S Q +I+E R + LL+LD
Sbjct: 189 K-----QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILD 243
Query: 291 DVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVA-CIMGSTNIISINVLSEMGCWLVF 349
DVW+ W LK + +IL+TTR ++V +MG ++ + S +G
Sbjct: 244 DVWD----SW-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVE--SSLGKEKGL 292
Query: 350 EPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKNTE-----KEWQNXX- 403
E L+ +++ +L E I ++CKG PL I LLR K+ QN
Sbjct: 293 EILSLF--VNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQF 350
Query: 404 XXXXXXXXXXXKGLLAPLLLSYNELPPKIKQCFTYCAVFPKDYRIWKYKLIELWMAQGYL 463
+ L + +S L IK +T ++ KD ++ L LW
Sbjct: 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW------ 404
Query: 464 SEKGPKEMEDIGEEYFNTLASRSFFQDLERERDGKIYACKMHDIVHDF 511
+ +E+EDI +E+ N F D R+GK + +HD+ DF
Sbjct: 405 -DMETEEVEDILQEFVN---KSLLFCD----RNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 87/348 (25%), Positives = 148/348 (42%), Gaps = 54/348 (15%)
Query: 186 KKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK-FEKRM-WICVS 243
+K+LVN + + SK + P +++ GM G GK+ LA A + + + F + W+ V
Sbjct: 135 RKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG 194
Query: 244 ELFDEFRIARAIIEALTGSASNFGEFQSLMQ----HIQECVQRKKF---------LLVLD 290
+ + ++ L + + +S Q +I+E R + LL+LD
Sbjct: 195 K-----QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILD 249
Query: 291 DVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVA-CIMGSTNIISINVLSEMGCWLVF 349
DVW+ W LK + +IL+TTR ++V +MG ++ + S +G
Sbjct: 250 DVWD----SW-----VLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVE--SSLGKEKGL 298
Query: 350 EPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKNTEKEW-----QNXX- 403
E L+ +++ +L E I ++CKG PL I LLR E+ QN
Sbjct: 299 EILSLF--VNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQF 356
Query: 404 XXXXXXXXXXXKGLLAPLLLSYNELPPKIKQCFTYCAVFPKDYRIWKYKLIELWMAQGYL 463
+ L + +S L IK +T ++ KD ++ L LW
Sbjct: 357 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW------ 410
Query: 464 SEKGPKEMEDIGEEYFNTLASRSFFQDLERERDGKIYACKMHDIVHDF 511
+ +E+EDI +E+ N F D R+GK + +HD+ DF
Sbjct: 411 -DMETEEVEDILQEFVN---KSLLFCD----RNGKSFRYYLHDLQVDF 450
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 149/348 (42%), Gaps = 54/348 (15%)
Query: 186 KKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK-FEKRM-WICVS 243
+K+LV+ + + K P +++ GM G GK+ LA A + + + F + W+ +
Sbjct: 129 RKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188
Query: 244 ELFDEFRIARAIIEALTGSASNFGEFQSLMQ----HIQECVQR---------KKFLLVLD 290
+ + ++ L + +S Q +I+E R + LL+LD
Sbjct: 189 K-----QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILD 243
Query: 291 DVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVA-CIMGSTNIISINVLSEMGCWLVF 349
DV W+P+ LK ++ +IL+TTR ++V +MG +++ + S +G
Sbjct: 244 DV-------WDPW--VLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVE--SGLGREKGL 292
Query: 350 EPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKNTE-----KEWQNXX- 403
E L+ +++E+L I ++CKG PL I LLR ++ QN
Sbjct: 293 EILSLF--VNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQF 350
Query: 404 XXXXXXXXXXXKGLLAPLLLSYNELPPKIKQCFTYCAVFPKDYRIWKYKLIELWMAQGYL 463
+ L + +S L IK +T ++ KD ++ L LW +
Sbjct: 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--- 407
Query: 464 SEKGPKEMEDIGEEYFNTLASRSFFQDLERERDGKIYACKMHDIVHDF 511
+E+EDI +E+ N +S L R+GK + +HD+ DF
Sbjct: 408 ----TEEVEDILQEFVN----KSL---LFCNRNGKSFCYYLHDLQVDF 444
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 148/348 (42%), Gaps = 54/348 (15%)
Query: 186 KKELVNRLLCESSKEQKGPCIISLVGMGGIGKTTLAQFAYNNVDVKKK-FEKRM-WICVS 243
+K+LV+ + + K P +++ GM G GK+ LA A + + + F + W+ +
Sbjct: 136 RKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 195
Query: 244 ELFDEFRIARAIIEALTGSASNFGEFQSLMQ----HIQECVQR---------KKFLLVLD 290
+ + ++ L + +S Q +I+E R + LL+LD
Sbjct: 196 K-----QDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILD 250
Query: 291 DVWNEDYCKWEPFYHCLKDGLHESKILITTRKETVA-CIMGSTNIISINVLSEMGCWLVF 349
DV W+P+ LK ++ +IL+TT ++V +MG +++ + S +G
Sbjct: 251 DV-------WDPW--VLKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVE--SGLGREKGL 299
Query: 350 EPLAFSGKSTVERENLEEIGREITRKCKGLPLAAKTIACLLRSKNTE-----KEWQNXX- 403
E L+ +++E+L I ++CKG PL I LLR ++ QN
Sbjct: 300 EILSLF--VNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQF 357
Query: 404 XXXXXXXXXXXKGLLAPLLLSYNELPPKIKQCFTYCAVFPKDYRIWKYKLIELWMAQGYL 463
+ L + +S L IK +T ++ KD ++ L LW +
Sbjct: 358 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--- 414
Query: 464 SEKGPKEMEDIGEEYFNTLASRSFFQDLERERDGKIYACKMHDIVHDF 511
+E+EDI +E+ N +S L R+GK + +HD+ DF
Sbjct: 415 ----TEEVEDILQEFVN----KSL---LFCNRNGKSFCYYLHDLQVDF 451
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 20/160 (12%)
Query: 550 RGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTNI 609
R ASVP I N + +L D +E +FD L L+ L L + + +P +
Sbjct: 30 RHASVPAGIPTNAQ----ILYLHDNQITKLE--PGVFDSLINLKELYLGSNQLGALPVGV 83
Query: 610 -EKLLHLKYLNLSCQMEIERLPETLCE-LYNLERLNVDSCSNLRELPQGIGKLRKLMHLE 667
+ L L L+L ++ LP + + L +L+ L + C+ L ELP+GI +L L HL
Sbjct: 84 FDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFM-CCNKLTELPRGIERLTHLTHLA 141
Query: 668 NDQTDSLRYLPVGIGELISLRRVSKL----VVGGGYDKAC 703
DQ + L+ +P G + R+S L + G +D C
Sbjct: 142 LDQ-NQLKSIPHG-----AFDRLSSLTHAYLFGNPWDCEC 175
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 544 LMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVL-RQLFDKLTCLRTLKLDGSVI 602
L L ++ ++P+ ++D++ L L + +++ + VL +FD+L L+ L + + +
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ----LTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 603 IEIPTNIEKLLHLKYLNLSCQMEIERLP 630
E+P IE+L HL +L L Q +++ +P
Sbjct: 125 TELPRGIERLTHLTHLALD-QNQLKSIP 151
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 540 KVFHLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDG 599
K+ +L L + S+P ++D + L+ L + +++ V FDKLT L+TLKLD
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK---RVPEGAFDKLTELKTLKLDN 190
Query: 600 SVIIEIPTN-IEKLLHLKYLNL 620
+ + +P + L LK L L
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQL 212
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 15/102 (14%)
Query: 4 AIISPLLEQLTSMTVEEAKEQVRLVTGVGKEAKKLTSNLRAIQAVL---HDAEKRQVKEE 60
A IS L+ +L + EE K L GV K + L L + A L + + Q+ +
Sbjct: 1 AAISNLIPKLGELLTEEFK----LHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQ 56
Query: 61 TVRLWLDQLRHACYDMEDVLGEWNTARLKLQIDGV--DDHEN 100
+LW D++R Y +EDV+ + +Q+DG+ DD+ N
Sbjct: 57 D-KLWADEVRELSYVIEDVVD-----KFLVQVDGIKSDDNNN 92
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.9 bits (76), Expect = 0.49, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 552 ASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVIIEIPTN-IE 610
AS+P+ ++D++ L L + ++ + +FD+LT L+ L+L+ + + IP +
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLK---SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152
Query: 611 KLLHLKYLNLSCQMEIERLP 630
KL +L+ L+LS +++ +P
Sbjct: 153 KLTNLQTLSLSTN-QLQSVP 171
>pdb|3SE3|A Chain A, Human Ifna2-Ifnar Ternary Complex
pdb|3SE4|A Chain A, Human Ifnw-Ifnar Ternary Complex
Length = 414
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 19/116 (16%)
Query: 823 LPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIA-FPKLKELRFWSMKELEE 881
LPP+ + SL D + +G+ K+ GN + VI +P + E+ FW E
Sbjct: 311 LPPVFNIRSLSDSFHIYIGAPKQSGN-----------TPVIQDYPLIYEIIFWENTSNAE 359
Query: 882 WDFVTAVKGEIRIMPRLSSLSIVYCPKLKALPDHLLQKTTLQRLSIFSCPILKKTK 937
+ K ++ + P L L+ VYC K +A H + + L + S+FS + +KTK
Sbjct: 360 RKIIEK-KTDVTV-PNLKPLT-VYCVKARA---HTMDE-KLNKSSVFSDAVCEKTK 408
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 544 LMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVII 603
L+L ++ S+P ++D + L L + ++ + + +FDKLT L L LD + +
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ---SLPKGVFDKLTNLTRLDLDNNQLQ 170
Query: 604 EIPTNI-EKLLHLKYLNLS 621
+P + +KL LK L+L+
Sbjct: 171 SLPEGVFDKLTQLKQLSLN 189
>pdb|3EJW|A Chain A, Crystal Structure Of The Sinorhizobium Meliloti Ai-2
Receptor, Smlsrb
pdb|3EJW|B Chain B, Crystal Structure Of The Sinorhizobium Meliloti Ai-2
Receptor, Smlsrb
Length = 315
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 821 EHLPPLGKLPSLEDLEILGMGSVKRVGNEFLGVERDTDGSSVIAFPKLKELRFWSMKELE 880
+H+ G + E LEI G+G+V+ N+ G + + DG+ +I P E ++ + +
Sbjct: 255 DHVLKNGPMKVGEKLEIPGVGTVEVSANKVQGYDYEADGNGIILLP---ERTVFTKENIG 311
Query: 881 EWDF 884
+DF
Sbjct: 312 NFDF 315
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K46|B Chain B, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K4D|A Chain A, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
pdb|3K4D|B Chain B, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
Length = 605
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 477 EYFNTLASRSFFQDLERERD-GKIYACKMH-DIVHDFAQFLCMNECFALEIHSAENSFMR 534
EYF LA + D R + C H D + D LC+N + + S +
Sbjct: 425 EYFAPLAEATRKLDPTRPITCVNVMFCDAHTDTISDLFDVLCLNRYYGWYVQSGDLETAE 484
Query: 535 SFREKKVFHLMLTLHRGASVPISIWDNVKGLRSLLVK--SDEY--SWSIEVLRQLFDKLT 590
EK++ LH+ + D + GL S+ S+EY +W +++ ++FD+++
Sbjct: 485 KVLEKELLAWQEKLHQPIIITEYGVDTLAGLHSMYTDMWSEEYQCAW-LDMYHRVFDRVS 543
Query: 591 CL 592
+
Sbjct: 544 AV 545
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 178 EIVGREKEKKELVNRLLCESSKEQKGPC-IISLVGMGGIGKTTLAQFAYNNVDV 230
E +G+E+ K++L R+ E++K +K P + L G G+GKTTLA + + V
Sbjct: 13 EYIGQERLKQKL--RVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV 64
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 543 HLMLTLHRGASVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDGSVI 602
+L L+ ++ S+P ++D + L+ L + +++ + +FDKLT L+ L+L + +
Sbjct: 80 YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ---SLPDGVFDKLTQLKDLRLYQNQL 136
Query: 603 IEIPTNI-EKLLHLKYLNL 620
+P + ++L L+Y+ L
Sbjct: 137 KSVPDGVFDRLTSLQYIWL 155
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPF|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPG|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
pdb|3LPG|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
Length = 605
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 477 EYFNTLASRSFFQDLERERD-GKIYACKMH-DIVHDFAQFLCMNECFALEIHSAENSFMR 534
EYF LA + D R + C H D + D LC+N + + S +
Sbjct: 425 EYFAPLAEATRKLDPTRPITCVNVXFCDAHTDTISDLFDVLCLNRYYGWYVQSGDLETAE 484
Query: 535 SFREKKVFHLMLTLHRGASVPISIWDNVKGLRSLLVK--SDEY--SWSIEVLRQLFDKLT 590
EK++ LH+ + D + GL S S+EY +W ++ ++FD+++
Sbjct: 485 KVLEKELLAWQEKLHQPIIITEYGVDTLAGLHSXYTDXWSEEYQCAW-LDXYHRVFDRVS 543
Query: 591 CL 592
+
Sbjct: 544 AV 545
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
pdb|3K4A|B Chain B, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
Length = 605
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 477 EYFNTLASRSFFQDLERERDG-KIYACKMH-DIVHDFAQFLCMNECFALEIHSAENSFMR 534
EYF LA + D R + C H D + D LC+N + + S +
Sbjct: 425 EYFAPLAEATRKLDPTRPITCVNVXFCDAHTDTISDLFDVLCLNRYYGWYVQSGDLETAE 484
Query: 535 SFREKKVFHLMLTLHRGASVPISIWDNVKGLRSLLVK--SDEY--SWSIEVLRQLFDKLT 590
EK++ LH+ + D + GL S S+EY +W ++ ++FD+++
Sbjct: 485 KVLEKELLAWQEKLHQPIIITEYGVDTLAGLHSXYTDXWSEEYQCAW-LDXYHRVFDRVS 543
Query: 591 CL 592
+
Sbjct: 544 AV 545
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 178 EIVGREKEKKELVNRLLCESSKEQKGPCI-ISLVGMGGIGKTTLAQ 222
E +G+E+ K++L R+ E++K +K P + L G G+GKTTLA
Sbjct: 13 EYIGQERLKQKL--RVYLEAAKARKEPLEHLLLFGPPGLGKTTLAH 56
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 30.0 bits (66), Expect = 6.9, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 178 EIVGREKEKKELVNRLLCESSKEQKGPCI-ISLVGMGGIGKTTLAQ 222
E +G+E+ K++L R+ E++K +K P + L G G+GKTTLA
Sbjct: 13 EYIGQERLKQKL--RVYLEAAKARKEPLEHLLLFGPPGLGKTTLAH 56
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 553 SVPISIWDNVKGLRSLLVKSDEYSWSIEVLRQLFDKLTCLRTLKLDG-SVIIEIPTNIEK 611
S+P SI N++ L+SL +++ S L L L L L G + + P
Sbjct: 197 SLPASI-ANLQNLKSLKIRNSPLS----ALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 612 LLHLKYLNLSCQMEIERLPETLCELYNLERLNVDSCSNLRELPQGIGKL 660
LK L L + LP + L LE+L++ C NL LP I +L
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,183,637
Number of Sequences: 62578
Number of extensions: 1112849
Number of successful extensions: 3084
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 3062
Number of HSP's gapped (non-prelim): 46
length of query: 955
length of database: 14,973,337
effective HSP length: 108
effective length of query: 847
effective length of database: 8,214,913
effective search space: 6958031311
effective search space used: 6958031311
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)